Stand conditions and tree characteristics affect quality of longleaf pine for red-cockaded woodpecker cavity trees

Treesearch

W.G. Ross; D.L. Kulhavy; R.N. Conner

1997-01-01

We measured resin flow of longleaf (Pinus palustris Mill.) pines in red-cockaded woodpecker (Picoides borealis Vieillot) clusters in the Angelina National Forest in Texas, and the Apalachicola National Forest in Florida. Sample trees were categorized as active cavity trees, inactive cavity trees and control trees. Sample trees were further...

Interacting Factors Driving a Major Loss of Large Trees with Cavities in a Forest Ecosystem

PubMed Central

Lindenmayer, David B.; Blanchard, Wade; McBurney, Lachlan; Blair, David; Banks, Sam; Likens, Gene E.; Franklin, Jerry F.; Laurance, William F.; Stein, John A. R.; Gibbons, Philip

2012-01-01

Large trees with cavities provide critical ecological functions in forests worldwide, including vital nesting and denning resources for many species. However, many ecosystems are experiencing increasingly rapid loss of large trees or a failure to recruit new large trees or both. We quantify this problem in a globally iconic ecosystem in southeastern Australia – forests dominated by the world's tallest angiosperms, Mountain Ash (Eucalyptus regnans). Tree, stand and landscape-level factors influencing the death and collapse of large living cavity trees and the decay and collapse of dead trees with cavities are documented using a suite of long-term datasets gathered between 1983 and 2011. The historical rate of tree mortality on unburned sites between 1997 and 2011 was >14% with a mortality spike in the driest period (2006–2009). Following a major wildfire in 2009, 79% of large living trees with cavities died and 57–100% of large dead trees were destroyed on burned sites. Repeated measurements between 1997 and 2011 revealed no recruitment of any new large trees with cavities on any of our unburned or burned sites. Transition probability matrices of large trees with cavities through increasingly decayed condition states projects a severe shortage of large trees with cavities by 2039 that will continue until at least 2067. This large cavity tree crisis in Mountain Ash forests is a product of: (1) the prolonged time required (>120 years) for initiation of cavities; and (2) repeated past wildfires and widespread logging operations. These latter factors have resulted in all landscapes being dominated by stands ≤72 years and just 1.16% of forest being unburned and unlogged. We discuss how the features that make Mountain Ash forests vulnerable to a decline in large tree abundance are shared with many forest types worldwide. PMID:23071486

Raccoon (Procyon lotor) diurnal den use within an intensively managed forest in central West Virginia

USGS Publications Warehouse

Owen, Sheldon F.; Berl, Jacob L.; Edwards, John W.; Ford, W. Mark; Wood, Petra Bohall

2015-01-01

Intensive forest management may influence the availability of suitable den sites for large den-seeking species, such as Procyon lotor (Raccoon). As part of a Raccoon ecology study on an industrial forest in the Allegheny Mountains of central West Virginia, we radio-tracked 32 Raccoons to 175 diurnal den sites to determine relative use of dens that included cavity trees, rock dens, log piles, slash piles, and exposed limbs. Patterns of den use significantly differed between sexes and among seasons. Overall, we recorded 58 cavity dens in 12 tree species with 7 maternal dens found in 5 tree species. Raccoons selected larger-diameter den trees than available cavity trees and non-cavity trees. Because the abundance of suitable tree cavities is known to influence Raccoon densities and recruitment at fine spatial scales and female Raccoons in this study used tree cavities as maternal den sites, the continued harvest of large-diameter trees (i.e., those capable of developing den cavities) without replacement may impact Raccoon recruitment within intensively managed forests throughout the central Appalachians.

Losses of red-cockaded woodpecker cavity trees to southern pine beetles

Treesearch

Richard N. Conner; D. Craig Rudolph

1995-01-01

Over an 1 l-year period (1983-1993), we examined the southern pine beetle (Dendroctonus frontalis) infestation rate of single Red-cockaded Woodpecker (Picoides borealis) cavity trees on the Angelina National Forest in Texas. Southern pine beetles infested and killed 38 cavity trees during this period. Typically, within each cavity tree cluster, beetles infested only...

Cavity Nesting Birds

Treesearch

Virgil E. Scott; Keith E. Evans; David R. Patton; Charles P. Stone

1977-01-01

Many species of cavity-nesting birds have declined because of habitat reduction. In the eastern United States, where primeval forests are gone, purple martins depend almost entirely on man-made nesting structures (Allen and Nice 1952). The hole-nesting population of peregrine falcons disappeared with the felling of the giant trees upon which they depended (Hickey and...

Red-cockaded woodpecker cavity tree resin avoidance by southern flying squirrels

Treesearch

Richard R. Schaefer; Daniel Saenz

1998-01-01

While examining red-cockaded woodpecker (Picoides borealis) cavity contents in eastern Texas, the authors observed cavity tree resin avoidance by southern flying squirrels (Glaucomys volans). The tree surface around an active red-cockaded woodpecker cavity is coated with sticky resin which flows from resin wells created by the woodpecker. The southern flying squirrel...

Availability of nest cavity trees for wood ducks (Aix sponsa) at Sunkhaze Meadows National Wildlife Refuge, Maine

USGS Publications Warehouse

Clugston, D.A.

1999-01-01

The availability of natural cavities for cavitynesting waterfowl, especially wood ducks (Aix sponsa), was unknown ferating forest of Sunkhaze Meadows National Wildlife Refuge, ME. An assessment of cavity availability was needed to determine if the existing nesting box program should be increased. During November to March, 199697 and 199798, I sampled 56 onehalf ha random plots, stratified into 5 types (upland hardwood, upland conifer, upland mixwood, wetland conifer, and wetland hardwood) to assess availability of trees with cavities. The predominant tree species with cavities were red maple (Acer rubrum; 39%) and aspen (Populus sp.; 31%); 72% of all trees with cavities were alive. Density ees/plot averaged from 1.0 +0.4 (x +SE) in wetland softwoods to 1.9 +0.4 in upland hardwoods. This low density of potential cavity trees and the small mean dbh (39.4 +1.6 cm) indicate a young forest with few suitable cavities. Forested areas, especially hardwoods near canopy openings, need to be allowed to mature to increase the number and quality of future cavities. An expanded nest box program seems justified.

Cavity trees, snags, and selection cutting: a northern hardwood case study

Treesearch

Laura S. Kenefic; Ralph D. Nyland

2007-01-01

Although traditional application of the selection system includes a focus on high-value trees that may reduce cavities and snags, few studies have quantified those habitat features in managed uneven-aged stands. We examined the effects of single-tree selection cutting on cavity trees and snags in a northern hardwood stand immediately prior to the second cutting....

Cavities in trees around spring seeps in the maple-beech-birch forest type

Treesearch

Andrew B. Carey; William M. Healy

1981-01-01

We examined 913 trees of 15 species in the vicinity of eight spring seeps in a second-growth maple-beech-birch forest. We found that 18 percent of the trees had large dead limbs that indicated top rot. We found 37 cavities in 27 trees (3.0 percent). However, only seven cavities were being used by wildlife in September and mice (Peromyscus sp.) used...

Tree cavity estimation and verification in the Missouri Ozarks

Treesearch

Randy G. Jensen; John M. Kabrick; Eric K. Zenner

2002-01-01

Missouri forest management guidelines require that cavity trees and snags be provided for wildlife. Missouri Ozark Forest Ecosystem Project (MOFEP) timber inventories provided opportunities to determine if cavity tree and snag densities in a mature second-growth oak-hickory-pine forest meet forest management guidelines, to evaluate the effects of the first-entry...

Thermal conditions within tree cavities in ponderosa pine (Pinus ponderosa) forests: potential implications for cavity users.

PubMed

Vierling, Kerri T; Lorenz, Teresa J; Cunningham, Patrick; Potterf, Kelsi

2018-04-01

Tree cavities provide critical roosting and breeding sites for multiple species, and thermal environments in these cavities are important to understand. Our objectives were to (1) describe thermal characteristics in cavities between June 3 and August 9, 2014, and (2) investigate the environmental factors that influence cavity temperatures. We placed iButtons in 84 different cavities in ponderosa pine (Pinus ponderosa) forests in central Washington, and took hourly measurements for at least 8 days in each cavity. Temperatures above 40 °C are generally lethal to developing avian embryos, and ~ 18% of the cavities had internal temperatures of ≥ 40 °C for at least 1 h of each day. We modeled daily maximum cavity temperature, the amplitude of daily cavity temperatures, and the difference between the mean internal cavity and mean ambient temperatures as a function of several environmental variables. These variables included canopy cover, tree diameter at cavity height, cavity volume, entrance area, the hardness of the cavity body, the hardness of the cavity sill (which is the wood below the cavity entrance which forms the barrier between the cavity and the external environment), and sill width. Ambient temperature had the largest effect size for maximum cavity temperature and amplitude. Larger trees with harder sills may provide more thermally stable cavity environments, and decayed sills were positively associated with maximum cavity temperatures. Summer temperatures are projected to increase in this region, and additional research is needed to determine how the thermal environments of cavities will influence species occupancy, breeding, and survival.

Thermal conditions within tree cavities in ponderosa pine (Pinus ponderosa) forests: potential implications for cavity users

NASA Astrophysics Data System (ADS)

Vierling, Kerri T.; Lorenz, Teresa J.; Cunningham, Patrick; Potterf, Kelsi

2017-11-01

Tree cavities provide critical roosting and breeding sites for multiple species, and thermal environments in these cavities are important to understand. Our objectives were to (1) describe thermal characteristics in cavities between June 3 and August 9, 2014, and (2) investigate the environmental factors that influence cavity temperatures. We placed iButtons in 84 different cavities in ponderosa pine (Pinus ponderosa) forests in central Washington, and took hourly measurements for at least 8 days in each cavity. Temperatures above 40 °C are generally lethal to developing avian embryos, and 18% of the cavities had internal temperatures of ≥ 40 °C for at least 1 h of each day. We modeled daily maximum cavity temperature, the amplitude of daily cavity temperatures, and the difference between the mean internal cavity and mean ambient temperatures as a function of several environmental variables. These variables included canopy cover, tree diameter at cavity height, cavity volume, entrance area, the hardness of the cavity body, the hardness of the cavity sill (which is the wood below the cavity entrance which forms the barrier between the cavity and the external environment), and sill width. Ambient temperature had the largest effect size for maximum cavity temperature and amplitude. Larger trees with harder sills may provide more thermally stable cavity environments, and decayed sills were positively associated with maximum cavity temperatures. Summer temperatures are projected to increase in this region, and additional research is needed to determine how the thermal environments of cavities will influence species occupancy, breeding, and survival.

Use of external nesting boxes by roosting red-cockaded woodpeckers

Treesearch

William E. Taylor; Robert G. Hooper

2004-01-01

Red-cockaded woodpeckers (Picoides borealis) roost year-round in cavities they excavate in living pine trees. Cavity excavation is a lengthy process (Conner and Rudolph 1995a) and sometimes a member of a family group does not have an available cavity for roosting within its resident cluster of cavity trees. Woodpeckers without a cavity either roost...

Causes of mortality of red-cockaded woodpecker cavity trees

Treesearch

Richard N. Conner; D. Craig Rudolph; David L. Kulhavy; Ann E. Snow

1991-01-01

Over a 13-year period we examined the mortality of cavity trees (n = 453) used by red-cockaded woodpeckers (Picoides borealis) on national forests in eastern Texas. Bark beetles (53%), wind snap (30%), and fire (7%) were the major causes of cavity tree mortality. Bark beetles were the major cause of mortality in loblolly (Pinus taeda...

Red-cockaded woodpeckers vs rat snakes: the effectiveness of the resin barrier

Treesearch

D. Craig Rudolph; Howard Kyle; Richard N. Conner

1990-01-01

Red-cockaded Woodpeckers (Picoides borealis) excavate resin wells in the immediate vicinity of roost and nest cavity entrances. Resin wells are worked regularly, resulting in a copious and persistent resin flow that coats the tree trunk, especially below cavity entrances. Red-cockaded Woodpeckers also scale loose bark from cavity trees and closely adjacent trees....

Pileated woodpecker damage to red-cockaded woodpecker cavity trees in eastern Texas

Treesearch

Daniel Saenz; Richard N. Conner; Clifford E. Shackelford; D. Craig Rudolph

1998-01-01

The authors surveyed all known red-cockaded woodpecker (Picoides borealis) cavity trees (n = 514) in the Angelina National Forest in eastern Texas for pileated woodpecker (Dryocopus pileatus) damage. They compared the frequency of pileated woodpecker damage to red-cockaded woodpecker cavity trees in longleaf pine (Pinus palustris) habitat to damage in loblolly (P....

Extent of Phellinus pini decay in loblolly pines and red-cockaded woodpecker cavity trees in eastern Texas.

Treesearch

Richard N. Conner; Daniel Saenz; D. Craig Rudolph; Richard R. Schaefer

2004-01-01

Extent of Phellinus pini decay in loblolly pines and red-cockaded woodpecker cavity trees in eastern Texas. Memoirs of The New York Botanical Garden 89: 315-321, 2004. To determine the prevalence of Phellinus pini in pines generally and red-cockaded woodpecker cavity trees specifically, we dissected 24 loblolly pines (...

Temperature characteristics of winter roost-sites for birds and mammals: tree cavities and anthropogenic alternatives

NASA Astrophysics Data System (ADS)

Grüebler, Martin U.; Widmer, Silv; Korner-Nievergelt, Fränzi; Naef-Daenzer, Beat

2014-07-01

The microclimate of potential roost-sites is likely to be a crucial determinant in the optimal roost-site selection of endotherms, in particular during the winter season of temperate zones. Available roost-sites for birds and mammals in European high trunk orchards are mainly tree cavities, wood stacks and artificial nest boxes. However, little is known about the microclimatic patterns inside cavities and thermal advantages of using these winter roost-sites. Here, we simultaneously investigate the thermal patterns of winter roost-sites in relation to winter ambient temperature and their insulation capacity. While tree cavities and wood stacks strongly buffered the daily cycle of temperature changes, nest boxes showed low buffering capacity. The buffering effect of tree cavities was stronger at extreme ambient temperatures compared to temperatures around zero. Heat sources inside roosts amplified Δ T (i.e., the difference between inside and outside temperatures), particularly in the closed roosts of nest boxes and tree cavities, and less in the open wood stacks with stronger circulation of air. Positive Δ T due to the installation of a heat source increased in cold ambient temperatures. These results suggest that orchard habitats in winter show a spatiotemporal mosaic of sites providing different thermal benefits varying over time and in relation to ambient temperatures. At cold temperatures tree cavities provide significantly higher thermal benefits than nest boxes or wood stacks. Thus, in winter ecology of hole-using endotherms, the availability of tree cavities may be an important characteristic of winter habitat quality.

A comparison of the breeding ecology of birds nesting in boxes and tree cavities

Treesearch

Kathryn L. Purcell; Jared Verner; Lewis W. Oring

1997-01-01

We compared laying date, nesting success, clutch size, and productivity of four bird species that nest in boxes and tree cavities to examine whether data from nest boxes are comparable with data from tree cavities. Western Bluebirds (Sialia mexicana) gained the most advantage from nesting in boxes. They initiated egg laying earlier, had higher nesting success, lower...

African Baobabs with False Inner Cavities: The Radiocarbon Investigation of the Lebombo Eco Trail Baobab

PubMed Central

Patrut, Adrian; Woodborne, Stephan; von Reden, Karl F.; Hall, Grant; Hofmeyr, Michele; Lowy, Daniel A.; Patrut, Roxana T.

2015-01-01

The article reports the radiocarbon investigation results of the Lebombo Eco Trail tree, a representative African baobab from Mozambique. Several wood samples collected from the large inner cavity and from the outer part of the tree were investigated by AMS radiocarbon dating. According to dating results, the age values of all samples increase from the sampling point with the distance into the wood. For samples collected from the cavity walls, the increase of age values with the distance into the wood (up to a point of maximum age) represents a major anomaly. The only realistic explanation for this anomaly is that such inner cavities are, in fact, natural empty spaces between several fused stems disposed in a ring-shaped structure. We named them false cavities. Several important differences between normal cavities and false cavities are presented. Eventually, we dated other African baobabs with false inner cavities. We found that this new architecture enables baobabs to reach large sizes and old ages. The radiocarbon date of the oldest sample was 1425 ± 24 BP, which corresponds to a calibrated age of 1355 ± 15 yr. The dating results also show that the Lebombo baobab consists of five fused stems, with ages between 900 and 1400 years; these five stems build the complete ring. The ring and the false cavity closed 800–900 years ago. The results also indicate that the stems stopped growing toward the false cavity over the past 500 years. PMID:25621989

Natural cavities used by wood ducks in north-central Minnesota

USGS Publications Warehouse

Gilmer, D.S.; Ball, I.J.; Cowardin, L.M.; Mathisen, J.

1978-01-01

Radio telemetry was used to locate 31 wood duck (Aix sponsa) nest cavity sites in 16 forest stands. Stands were of 2 types: (1) mature (mean = 107 years) northern hardwoods (10 nest sites), and (2) mature (mean = 68 years) quaking aspen (Populus tremuloides) (21 nest sites). Aspen was the most important cavity-producing tree used by wood ducks and accounted for 57 percent of 28 cavities inspected. In stands used by wood ducks, the average density of suitable cavities was about 4 per hectare. Trees containing nests were closer to water areas (P < 0.05) and the nearest forest canopy openings (P < 0.01) than was a random sample of trees from the same stands. A significant (P < 0.005) relationship existed between the orientation of the cavity entrance and the nearest canopy opening. Potential wood duck cavities usually were clustered within a stand rather than randomly distributed. Selection of trees by woodpeckers for nest hole construction probably influenced the availability of cavities used by wood ducks. A plan for managing forests to benefit wood ducks and other wildlife dependent on old-growth timber is discussed.

Estimating cavity tree and snag abundance using negative binomial regression models and nearest neighbor imputation methods

Treesearch

Bianca N.I. Eskelson; Hailemariam Temesgen; Tara M. Barrett

2009-01-01

Cavity tree and snag abundance data are highly variable and contain many zero observations. We predict cavity tree and snag abundance from variables that are readily available from forest cover maps or remotely sensed data using negative binomial (NB), zero-inflated NB, and zero-altered NB (ZANB) regression models as well as nearest neighbor (NN) imputation methods....

Summer heterothermy in Rafinesque's big-eared bats (Corynorhinus rafinesquii) roosting in tree cavities in bottomland hardwood forests.

PubMed

Johnson, Joseph S; Lacki, Michael J

2013-07-01

Many small mammals are heterothermic endotherms capable of maintaining an elevated core body temperature or reducing their thermoregulatory set point to enter a state of torpor. Torpor can confer substantial energy savings, but also incurs ecological costs, such as hindering allocation of energy towards reproduction. We placed temperature-sensitive radio transmitters on 44 adult Rafinesque's big-eared bats (Corynorhinus rafinesquii) and deployed microclimate dataloggers inside 34 day roosts to compare the use of torpor by different sex and reproductive classes of bats during the summer. We collected 324 bat-days of skin-temperature data from 36 females and 4 males. Reproductive females employed fewer torpor bouts per day than non-reproductive females and males (P < 0.0001), and pregnant and lactating females had higher average (P < 0.0001) and minimum (P < 0.0001) skin temperatures than non-reproductive females. Pregnant females spent less time torpid (P < 0.0001) than non-reproductive females, but lactating females used relatively deep, long torpor bouts. Microclimates varied inside tree species with different configurations of entrances to the roost cavity (P < 0.0001). Bats spent more time torpid when roosting in water tupelo (Nyssa aquatica) trees possessing only a basal entrance to the cavity (P = 0.001). Of the tree species used as roosts, water tupelo cavities exhibited the least variable daytime and nighttime temperatures. These data demonstrate that use of summer torpor is not uniform among sex and reproductive classes in Rafinesque's big-eared bat, and variation in microclimate among tree roosts due to species and structural characteristics facilitates the use of different thermoregulatory strategies in these bats.

A broad scale analysis of tree risk, mitigation and potential habitat for cavity-nesting birds

Treesearch

Brian Kane; Paige S. Warren; Susannah B. Lerman

2015-01-01

Trees in towns and cities provide habitat for wildlife. In particular, cavity-nesting birds nest in the deadand decayed stems and branches of these trees. The same dead and decayed stems and branches alsohave a greater likelihood of failure, which, in some circumstances, increases risk. We examined 1760trees in Baltimore, MD, USA and western MA, USA, assessing tree...

A model of gas mixing into single-entrance tree cavities during wildland fires

Treesearch

A.S. Bova; G. Bohrer; Matthew Dickinson

2011-01-01

The level of protection to fauna provided by tree cavities during wildland fires is not well understood. Here we present a model for estimating the transport of combustion gases into cylindrical, single-entrance cavities during exposures caused by different wildland fire scenarios. In these shelters, the entrance occurs near the top of the cavity. This empirical model...

Constructing Artifical Red-Cockaded Woodpecker Cavities

Treesearch

David H. Allen

1991-01-01

A complete guide is provided for excavating red-cockaded woodpecker (Picoides borealis) cavities. A hole 4 inches wide by 10 inches high by 6 inches deep is cut from a live pine(Pinusspp.) tree with a chainsaw, and a prefabricated cavity is inserted. Cavities can be excavated in pines of any age, but the diameter of the tree at the height of insertion must be greater...

Do Red-cockaded Woodpeckers Select Cavity Trees Based on Chemical Composition of Pine Resin?

Treesearch

Richard N. Conner; Robert H. Johnson; D. Craig Rudolph; Daniel Saenz

2003-01-01

We examined resin chemistry of loblolly (Pinus taeda) and shortleaf (P. echinata) pines selected as cavity trees by Red-cockaded Woodpeckers (Picoides borealis) in eastern Texas. We sampled resin from (1) pines selected by Red-cockaded Woodpeckers that contained naturally excavated active cavities, (2) pines...

Nest trees of northern spotted owls (Strix occidentalis caurina) in Washington and Oregon, USA

PubMed Central

Lesmeister, Damon B.; Forsman, Eric D.

2018-01-01

The northern spotted owl (Strix occidentalis caurina) is a federally-threatened subspecies in the United States associated with late-successional forests. In mesic forests it nests primarily in tree cavities, but also uses various types of external platform nests in drier forests. We describe 1717 northern spotted owl nests in 16 different tree species in five study areas in Washington and Oregon in the Pacific Northwest, USA. The vast majority of nests (87%) were in Douglas-fir (Pseudotsuga menziesii) trees, except on the Olympic Peninsula, Washington, where nests were about equally abundant in Douglas-fir, western red cedar (Thuja plicata), and western hemlock (Tsuga heterophylla) trees. Distribution of nests was 57.9% in top cavities of trees with broken tops, 20.3% in side cavities of hollow tree trunks, and 21.8% on external platforms of trees. Platforms were most common in the two driest study areas in the Eastern Cascades Physiographic Province, Washington (89% of nests), and the Klamath Province, Oregon (32%). The vast majority (89%) of nests were in trees with intact or declining crowns. Nests in dead trees were most common on the Olympic Peninsula. Nest trees with top and side cavities were larger and much more prevalent in study areas where annual precipitation was highest (Olympic Peninsula, Oregon Coast Range). Large nest cavities and platforms used by northern spotted owls occur almost exclusively in old forest. Managing for the retention of such forests and for their replacement is a significant challenge for land managers, especially in the face of climate change and an increasing human population, but will likely be required for the persistence of viable populations of northern spotted owls. PMID:29852017

High density of tree-cavities and snags in tropical dry forest of western Mexico raises questions for a latitudinal gradient.

PubMed

Vázquez, Leopoldo; Renton, Katherine

2015-01-01

It has been suggested that a latitudinal gradient exists of a low density of snags and high density of naturally-formed tree-cavities in tropical vs. temperate forests, though few cavities may have characteristics suitable for nesting by birds. We determined snag and cavity density, characteristics, and suitability for birds in a tropical dry forest biome of western Mexico, and evaluated whether our data fits the trend of snag and cavity density typically found in tropical moist and wet forests. We established five 0.25-ha transects to survey and measure tree-cavities and snags in each of three vegetation types of deciduous, semi-deciduous, and mono-dominant Piranhea mexicana forest, comprising a total of 3.75 ha. We found a high density of 77 cavities/ha, with 37 cavities suitable for birds/ha, where density, and characteristics of cavities varied significantly among vegetation types. Lowest abundance of cavities occurred in deciduous forest, and these were in smaller trees, at a lower height, and with a narrower entrance diameter. Only 8.6% of cavities were excavated by woodpeckers, and only 11% of cavities were occupied, mainly by arthropods, though 52% of all cavities were unsuitable for birds. We also found a high density of 56 snags/ha, with greatest density in deciduous forest (70 snags/ha), though these were of significantly smaller diameter, and snags of larger diameter were more likely to contain cavities. The Chamela-Cuixmala tropical dry forest had the highest density of snags recorded for any tropical or temperate forest, and while snag density was significantly correlated with mean snag dbh, neither latitude nor mean dbh predicted snag density in ten forest sites. The high spatial aggregation of snag and cavity resources in tropical dry forest may limit their availability, particularly for large-bodied cavity adopters, and highlights the importance of habitat heterogeneity in providing resources for primary and secondary cavity-nesters.

High Density of Tree-Cavities and Snags in Tropical Dry Forest of Western Mexico Raises Questions for a Latitudinal Gradient

PubMed Central

Vázquez, Leopoldo; Renton, Katherine

2015-01-01

It has been suggested that a latitudinal gradient exists of a low density of snags and high density of naturally-formed tree-cavities in tropical vs. temperate forests, though few cavities may have characteristics suitable for nesting by birds. We determined snag and cavity density, characteristics, and suitability for birds in a tropical dry forest biome of western Mexico, and evaluated whether our data fits the trend of snag and cavity density typically found in tropical moist and wet forests. We established five 0.25-ha transects to survey and measure tree-cavities and snags in each of three vegetation types of deciduous, semi-deciduous, and mono-dominant Piranhea mexicana forest, comprising a total of 3.75 ha. We found a high density of 77 cavities/ha, with 37 cavities suitable for birds/ha, where density, and characteristics of cavities varied significantly among vegetation types. Lowest abundance of cavities occurred in deciduous forest, and these were in smaller trees, at a lower height, and with a narrower entrance diameter. Only 8.6% of cavities were excavated by woodpeckers, and only 11% of cavities were occupied, mainly by arthropods, though 52% of all cavities were unsuitable for birds. We also found a high density of 56 snags/ha, with greatest density in deciduous forest (70 snags/ha), though these were of significantly smaller diameter, and snags of larger diameter were more likely to contain cavities. The Chamela-Cuixmala tropical dry forest had the highest density of snags recorded for any tropical or temperate forest, and while snag density was significantly correlated with mean snag dbh, neither latitude nor mean dbh predicted snag density in ten forest sites. The high spatial aggregation of snag and cavity resources in tropical dry forest may limit their availability, particularly for large-bodied cavity adopters, and highlights the importance of habitat heterogeneity in providing resources for primary and secondary cavity-nesters. PMID:25615612

Automatic segmentation of airway tree based on local intensity filter and machine learning technique in 3D chest CT volume.

PubMed

Meng, Qier; Kitasaka, Takayuki; Nimura, Yukitaka; Oda, Masahiro; Ueno, Junji; Mori, Kensaku

2017-02-01

Airway segmentation plays an important role in analyzing chest computed tomography (CT) volumes for computerized lung cancer detection, emphysema diagnosis and pre- and intra-operative bronchoscope navigation. However, obtaining a complete 3D airway tree structure from a CT volume is quite a challenging task. Several researchers have proposed automated airway segmentation algorithms basically based on region growing and machine learning techniques. However, these methods fail to detect the peripheral bronchial branches, which results in a large amount of leakage. This paper presents a novel approach for more accurate extraction of the complex airway tree. This proposed segmentation method is composed of three steps. First, Hessian analysis is utilized to enhance the tube-like structure in CT volumes; then, an adaptive multiscale cavity enhancement filter is employed to detect the cavity-like structure with different radii. In the second step, support vector machine learning will be utilized to remove the false positive (FP) regions from the result obtained in the previous step. Finally, the graph-cut algorithm is used to refine the candidate voxels to form an integrated airway tree. A test dataset including 50 standard-dose chest CT volumes was used for evaluating our proposed method. The average extraction rate was about 79.1 % with the significantly decreased FP rate. A new method of airway segmentation based on local intensity structure and machine learning technique was developed. The method was shown to be feasible for airway segmentation in a computer-aided diagnosis system for a lung and bronchoscope guidance system.

Heart Rot and Cavity Tree Selection by Red-Cockaded Woodpeckers

Treesearch

Robert G. Hooper; Michael R. Lennartz; H. David Muse

1991-01-01

Previous studies implied that decayed heartwood was important to cavity tree selection by red-cockaded woodpeckers (Picoides borealfs), but the results were inconclusive because they either lacked a control or were limited to 1 age class of trees. We compared the incidence of heart rot in loblolly and longleaf pines (Pinus taeda...

Does red-cockaded woodpecker excavation of resin wells increase risk of bark beetle infestation of cavity trees?

Treesearch

Richard N. Conner; Daniel Saenz; D. Craig Rudolph; William G. Ross; David L. Kulhavy; Robert N. Coulson

2001-01-01

The red-cockaded woodpecker (Picoides borealis) is unique among North American woodpeckers in that it nests and roosts almost exclusively in living pines (Pinus spp.) The red-cockaded woodpecker makes daily excavations at small wounds, termed "resin wells," around the cavity entrance and on the bole of the cavity tree...

Effects of wildfire on densities of secondary cavity-nesting birds in ponderosa pine forests of northern Arizona

Treesearch

Jill K. Dwyer; William M. Block

2000-01-01

Many catastrophic wildfires burned throughout forests in Arizona during the spring and summer of 1996 owing to severely dry conditions. One result of these fires was a loss of preexisting tree cavities for reproduction. In ponderosa pine (Pinus ponderosa) forests most cavities are found in dead trees; therefore, snags are a very important habitat...

The role of wood hardness in limiting nest site selection in avian cavity excavators

Treesearch

Teresa J. Lorenz; Kerri T. Vierling; Timothy R. Johnson; Philip C. Fischer

2015-01-01

Woodpeckers and other primary cavity excavators (PCEs) are important worldwide for excavating cavities in trees, and a large number of studies have examined their nesting preferences. However, quantitative measures of wood hardness have been omitted from most studies, and ecologists have focused on the effects of external tree- and habitat-level features on nesting....

Airway extraction from 3D chest CT volumes based on iterative extension of VOI enhanced by cavity enhancement filter

NASA Astrophysics Data System (ADS)

Meng, Qier; Kitasaka, Takayuki; Oda, Masahiro; Mori, Kensaku

2017-03-01

Airway segmentation is an important step in analyzing chest CT volumes for computerized lung cancer detection, emphysema diagnosis, asthma diagnosis, and pre- and intra-operative bronchoscope navigation. However, obtaining an integrated 3-D airway tree structure from a CT volume is a quite challenging task. This paper presents a novel airway segmentation method based on intensity structure analysis and bronchi shape structure analysis in volume of interest (VOI). This method segments the bronchial regions by applying the cavity enhancement filter (CEF) to trace the bronchial tree structure from the trachea. It uses the CEF in each VOI to segment each branch and to predict the positions of VOIs which envelope the bronchial regions in next level. At the same time, a leakage detection is performed to avoid the leakage by analysing the pixel information and the shape information of airway candidate regions extracted in the VOI. Bronchial regions are finally obtained by unifying the extracted airway regions. The experiments results showed that the proposed method can extract most of the bronchial region in each VOI and led good results of the airway segmentation.

Nest-site characteristics and linear abundance of cliff-nesting American kestrels on San Clemente Island, California

USGS Publications Warehouse

Sullivan, Brian L.; Kershner, Eric L.; Finn, S.P.; Condon, Anne M.; Cooper, Douglass M.; Garcelon, David K.

2003-01-01

American Kestrels( Falco sparverius) are typically secondary-cavity nesters, and use of natural cliff cavities for nest sites is less-commonly reported. On San Clemente Island (SCI), California, however, American Kestrels nest primarily on cliffs in major canyons(93%), to a lesser extent on seacliffs(4%), as well as in man-made structures (3%). We located and mapped 99 American Kestrel territories on SCI, and recorded 11 nest-site characteristics at 40 cliff nests during 2001-02. Nest cliffs were typically fractured igneous rock with mean height of 16.1 m +_ 1.8 SE. Mean slope of nest cliffs was vertical (x=91 degrees). Nest cliffs and cavities were significantly oriented to the southeast, away from the prevailing wind direction(NW). In eight canyons, where we believe that we found all occupied American Kestrel territories, the mean linear abundance was 2.1 pairs/km, greater than most published estimates. Contrary to most previous studies, no American Kestrels nested in tree cavities despite their presence in SCI canyons. The absence of cavity-excavating breeding birds from the island likely restricts kestrels to nesting in naturally-formed cavities and man-made structures.

Interspecific differences and commonalities in maternity roosting by tree cavity-roosting bats over a maternity season in a timber production landscape.

PubMed

Rueegger, Niels; Law, Brad; Goldingay, Ross

2018-01-01

Understanding maternity roost requirements is fundamental to guide timber production forest management given such roosts are vital to sustain bat populations. We tracked lactating females of three tree cavity-roosting species: Gould's long-eared bat (Nyctophilus gouldi) (n = 7), eastern broad-nosed bat (Scotorepens orion) (n = 6) and little forest bat (Vespadelus vulturnus) (n = 25), over five weeks in young (predominately <5 years old) forest regenerating from heavy timber harvest in southeast Australia. We aimed to investigate interspecific maternity roost selection in a regenerating landscape and by doing so, increase our understanding of the three species' roost ecology. Sixteen V. vulturnus, 15 N. gouldi and six S. orion unique maternity roost trees were located. Bats displayed a degree of maternity roost selection plasticity, however, interspecific differences were found. Nyctophilus gouldi roosted selectively in retained riparian buffers, in trees of high senescence and switched roosts every day. Vespadelus vulturnus roosted in logged areas and displayed high roost site fidelity, with one roost used for 33 consecutive days. Scotorepens orion selected large live trees of low senescence. The preliminary data for this species suggests that females roost most days in 'primary' roosts but display a roost switching behaviour conforming to the fission-fusion model. Dead trees were identified to be important for both N. gouldi and V. vulturnus. Historical and recent logging at our study area drastically reduced cavity-bearing tree density to 1.4 trees per hectare in the logging zones (outside of exclusion areas), potentially limiting local populations of tree cavity-roosting bats and other cavity-dependent wildlife. Our data demonstrate that forest management must consider a range of maternity roost requirements to accommodate differences among species and highlight the importance of exclusion areas for roost habitat. We propose that an expanded 'retention forestry' approach should be implemented in logged areas that includes in-perpetuity forest patch retention to increase habitat complexity and continuity.

Interspecific differences and commonalities in maternity roosting by tree cavity-roosting bats over a maternity season in a timber production landscape

PubMed Central

Law, Brad; Goldingay, Ross

2018-01-01

Understanding maternity roost requirements is fundamental to guide timber production forest management given such roosts are vital to sustain bat populations. We tracked lactating females of three tree cavity-roosting species: Gould's long-eared bat (Nyctophilus gouldi) (n = 7), eastern broad-nosed bat (Scotorepens orion) (n = 6) and little forest bat (Vespadelus vulturnus) (n = 25), over five weeks in young (predominately <5 years old) forest regenerating from heavy timber harvest in southeast Australia. We aimed to investigate interspecific maternity roost selection in a regenerating landscape and by doing so, increase our understanding of the three species’ roost ecology. Sixteen V. vulturnus, 15 N. gouldi and six S. orion unique maternity roost trees were located. Bats displayed a degree of maternity roost selection plasticity, however, interspecific differences were found. Nyctophilus gouldi roosted selectively in retained riparian buffers, in trees of high senescence and switched roosts every day. Vespadelus vulturnus roosted in logged areas and displayed high roost site fidelity, with one roost used for 33 consecutive days. Scotorepens orion selected large live trees of low senescence. The preliminary data for this species suggests that females roost most days in ‘primary’ roosts but display a roost switching behaviour conforming to the fission-fusion model. Dead trees were identified to be important for both N. gouldi and V. vulturnus. Historical and recent logging at our study area drastically reduced cavity-bearing tree density to 1.4 trees per hectare in the logging zones (outside of exclusion areas), potentially limiting local populations of tree cavity-roosting bats and other cavity-dependent wildlife. Our data demonstrate that forest management must consider a range of maternity roost requirements to accommodate differences among species and highlight the importance of exclusion areas for roost habitat. We propose that an expanded ‘retention forestry’ approach should be implemented in logged areas that includes in-perpetuity forest patch retention to increase habitat complexity and continuity. PMID:29543883

Nest sites and reproductive success of the Barred Owls (Strix varia) in Michigan

Treesearch

Sergej Postupalsky; Joseph M. Papp; Lewis Scheller

1997-01-01

During 1976-1995 we monitored 114 Barred Owl (Strix varia) breeding attempts in northern Michigan. We describe nest sites and report reproductive success for different types of nest sites. Most natural nest sites were tree cavities caused by decay at places where a limb or tree top had broken off. The mean d.b.h. of cavity trees (N = 18) was 48 cm...

Use of sonic tomography to detect and quantify wood decay in living trees1

PubMed Central

Gilbert, Gregory S.; Ballesteros, Javier O.; Barrios-Rodriguez, Cesar A.; Bonadies, Ernesto F.; Cedeño-Sánchez, Marjorie L.; Fossatti-Caballero, Nohely J.; Trejos-Rodríguez, Mariam M.; Pérez-Suñiga, José Moises; Holub-Young, Katharine S.; Henn, Laura A. W.; Thompson, Jennifer B.; García-López, Cesar G.; Romo, Amanda C.; Johnston, Daniel C.; Barrick, Pablo P.; Jordan, Fulvia A.; Hershcovich, Shiran; Russo, Natalie; Sánchez, Juan David; Fábrega, Juan Pablo; Lumpkin, Raleigh; McWilliams, Hunter A.; Chester, Kathleen N.; Burgos, Alana C.; Wong, E. Beatriz; Diab, Jonathan H.; Renteria, Sonia A.; Harrower, Jennifer T.; Hooton, Douglas A.; Glenn, Travis C.; Faircloth, Brant C.; Hubbell, Stephen P.

2016-01-01

Premise of the study: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes. Methods and Results: Living trunks of a diversity of tree species in tropical rainforests in the Republic of Panama were scanned using an Argus Electronic PiCUS 3 Sonic Tomograph and evaluated for the amount and patterns of internal decay. A protocol using ImageJ analysis software was used to quantify the proportions of intact and compromised wood. The protocols provide replicable estimates of internal decay and cavities for trees of varying shapes, wood density, and bark thickness. Conclusions: Sonic tomography, coupled with image analysis, provides an efficient, noninvasive approach to evaluate decay patterns and structural integrity of even irregularly shaped living trees. PMID:28101433

Modelling Sensory Limitation: The Role of Tree Selection, Memory and Information Transfer in Bats’ Roost Searching Strategies

PubMed Central

Ruczyński, Ireneusz; Bartoń, Kamil A.

2012-01-01

Sensory limitation plays an important role in the evolution of animal behaviour. Animals have to find objects of interest (e.g. food, shelters, predators). When sensory abilities are strongly limited, animals adjust their behaviour to maximize chances for success. Bats are nocturnal, live in complex environments, are capable of flight and must confront numerous perceptual challenges (e.g. limited sensory range, interfering clutter echoes). This makes them an excellent model for studying the role of compensating behaviours to decrease costs of finding resources. Cavity roosting bats are especially interesting because the availability of tree cavities is often limited, and their quality is vital for bats during the breeding season. From a bat’s sensory point of view, cavities are difficult to detect and finding them requires time and energy. However, tree cavities are also long lasting, allowing information transfer among conspecifics. Here, we use a simple simulation model to explore the benefits of tree selection, memory and eavesdropping (compensation behaviours) to searches for tree cavities by bats with short and long perception range. Our model suggests that memory and correct discrimination of tree suitability are the basic strategies decreasing the cost of roost finding, whereas perceptual range plays a minor role in this process. Additionally, eavesdropping constitutes a buffer that reduces the costs of finding new resources (such as roosts), especially when they occur in low density. We conclude that natural selection may promote different strategies of roost finding in relation to habitat conditions and cognitive skills of animals. PMID:23028666

Woodpecker-snag interactions: an overview of current knowledge in ponderosa pine systems

Treesearch

Kerry L. Farris; Steve Zack

2005-01-01

Standing dead trees (snags) with cavities are a critical ecological component of western coniferous forests. These structures provide foraging, roosting, and nesting habitat for numerous species of invertebrates, amphibians, reptiles, birds, and mammals. Snags may be created through a variety of interrelated processes including wildfire, drought, insects and disease....

The red-cockaded woodpecker cavity tree: A very special pine

Treesearch

Richard N. Conner; D. Craig Rudolph; Daniel Saenz; Robert H. Johnson

2004-01-01

The adaptation of red-cockaded woodpeckers (Picoides borealis) to fire-maintained southern pine ecosystems has included the development of behaviors that permit the species to use living pines for their cavity trees. Their adaptation to pine ecosystems has also involved a major adjustment in the species' breeding system to cooperative breeding,...

Accurate airway segmentation based on intensity structure analysis and graph-cut

NASA Astrophysics Data System (ADS)

Meng, Qier; Kitsaka, Takayuki; Nimura, Yukitaka; Oda, Masahiro; Mori, Kensaku

2016-03-01

This paper presents a novel airway segmentation method based on intensity structure analysis and graph-cut. Airway segmentation is an important step in analyzing chest CT volumes for computerized lung cancer detection, emphysema diagnosis, asthma diagnosis, and pre- and intra-operative bronchoscope navigation. However, obtaining a complete 3-D airway tree structure from a CT volume is quite challenging. Several researchers have proposed automated algorithms basically based on region growing and machine learning techniques. However these methods failed to detect the peripheral bronchi branches. They caused a large amount of leakage. This paper presents a novel approach that permits more accurate extraction of complex bronchial airway region. Our method are composed of three steps. First, the Hessian analysis is utilized for enhancing the line-like structure in CT volumes, then a multiscale cavity-enhancement filter is employed to detect the cavity-like structure from the previous enhanced result. In the second step, we utilize the support vector machine (SVM) to construct a classifier for removing the FP regions generated. Finally, the graph-cut algorithm is utilized to connect all of the candidate voxels to form an integrated airway tree. We applied this method to sixteen cases of 3D chest CT volumes. The results showed that the branch detection rate of this method can reach about 77.7% without leaking into the lung parenchyma areas.

Red-cockaded woodpecker cavity-tree damage by Hurricane Rita: an evaluation of contributing factors

Treesearch

Ben Bainbridge; Kristen A. Baum; Daniel Saenz; Cory K. Adams

2011-01-01

Picoides borealis (Red-cockaded Woodpecker) is an endangered species inhabiting pine savannas of the southeastern United States. Because the intensity of hurricanes striking the southeastern United States is likely to increase as global temperatures rise, it is important to identify factors contributing to hurricane damage to Red-cockaded Woodpecker cavity-trees. Our...

Effects of midstory reduction and thinning in red-cockaded woodpecker cavity tree clusters

Treesearch

Richard N. Conner; D. Craig Rudolph

1991-01-01

The red-cockaded woodpecker's (Picoides borealis) preference for open pine forest is well known (U.S. Fish and Wildl. Serv. 1985). Encroachment of hardwood midstory within redcockaded woodpecker clusters (colonies, aggregations of cavity trees used by groups of woodpeckers, see Walters et al. 1988) is believed to cause cluster abandonment (Hopkins and Lynn 1971,...

Differential Estimates of Southern Flying Squirrel (Glaucomys volans) Population Structure Based on Capture Method.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Laves, Kevin S.; Loeb, Susan C.

2006-01-01

ABSTRACT.—It is commonly assumed that population estimates derived from trapping small mammals are accurate and unbiased or that estimates derived from different capture methods are comparable. We captured southern flying squirrels (Glaucomys volans) using two methods to study their effect on red-cockaded woodpecker (Picoides borealis) reproductive success. Southern flying squirrels were captured at and removed from 30 red-cockaded woodpecker cluster sites during March to July 1994 and 1995 using Sherman traps placed in a grid encompassing a red-cockaded woodpecker nest tree and by hand from red-cockaded woodpecker cavities. Totals of 195 (1994) and 190 (1995) red-cockaded woodpecker cavities were examinedmore » at least three times each year. Trappability of southern flying squirrels in Sherman traps was significantly greater in 1995 (1.18%; 22,384 trap nights) than in 1994 (0.42%; 20,384 trap nights), and capture rate of southern flying squirrels in cavities was significantly greater in 1994 (22.7%; 502 cavity inspections) than in 1995 (10.8%; 555 cavity inspections). However, more southern flying squirrels were captured per cavity inspection than per Sherman trap night in both years. Male southern flying squirrels were more likely to be captured from cavities than in Sherman traps in 1994, but not in 1995. Both male and female juveniles were more likely to be captured in cavities than in traps in both years. In 1994 males in reproductive condition were more likely to be captured in cavities than in traps and in 1995 we captured significantly more reproductive females in cavities than in traps. Our data suggest that population estimates based solely on one trapping method may not represent true population size or structure of southern flying squirrels.« less

An unusually large number of eggs laid by a breeding red-cockaded woodpecker female

Treesearch

Richard N. Conner; Daniel Saenz; James R. McCormick

2001-01-01

The Red-cockaded Woodpecker (Picoides borealis) is a cooperatively breeding species that typically uses a single cavity for nesting (Ligon 1970, Walters et al. 1988). A single tree, or aggregation of cavity trees, termed the cluster, is inhabited by a group of woodpeckers that includes a single breeding pair and up to several helpers, which are...

[Nesting habitat characterization for Amazona oratrix (Psittaciformes: Psittacidae) in the Central Pacific, Mexico].

PubMed

Monterrubio-Rico, Tiberio C; Álvarez-Jara, Margarito; Tellez-Garcia, Loreno; Tena-Morelos, Carlos

2014-09-01

The nesting requirements of the Yellow-headed Parrot (Amazona oratrix) are poorly understood, despite their broad historical distribution, high demand for pet trade and current endangered status. Information concerning their nesting requirements is required in order to design specific restoration and conser- vation actions. To assess this, we studied their nesting ecology in the Central Pacific, Michoacan, Mexico during a ten year period. The analyzed variables ranged from local scale nest site characteristics such as nesting tree species, dimensions, geographic positions, diet and nesting forest patches structure, to large scale features such as vegetation use and climatic variables associated to the nesting tree distributions by an ecological niche model using Maxent. We also evaluated the parrot tolerance to land management regimes, and compared the Pacific nest trees with 18 nest trees recorded in an intensively managed private ranch in Tamaulipas, Gulf of Mexico. Parrots nested in tall trees with canopy level cavities in 92 nest-trees recorded from 11 tree species. The 72.8% of nesting occurred in trees of Astronium graveolens, and Enterolobium cyclocarpum which qualified as key- stone trees. The forests where the parrots nested, presented a maximum of 54 tree species, 50% of which were identified as food source; besides, these areas also had a high abundance of trees used as food supply. The lowest number of tree species and trees to forage occurred in an active cattle ranch, whereas the highest species rich- ness was observed in areas with natural recovery. The nesting cavity entrance height from above ground of the Pacific nesting trees resulted higher than those found in the Gulf of Mexico. We hypothesize that the differences may be attributed to Parrot behavioral differences adapting to differential poaching pressure and cavity avail- ability. Nesting trees were found in six vegetation types; however the parrots preferred conserved and riparian semi-deciduous forest for nesting, with fewer nests in deciduous forest, while nesting in transformed agricultural fields was avoided. The main climatic variables associated with the potential distribution of nests were: mean temperature of wettest quarter, mean diurnal temperature range, and precipitation of wettest month. Suitable cli- matic conditions for the potential presence of nesting trees were present in 61% of the region; however, most of the area consisted of tropical deciduous forests (55.8%), while semi-deciduous tropical forests covered only 17% of the region. These results indicated the importance to conserve semi-deciduous forests as breeding habitats for the Yellow-headed Parrot, and revealed the urgent need to implement conservation and restoration actions. These should include a total ban of land use change in tropical semi-deciduous forest areas, and for selective logging of all keystone tree species; besides, we recommend the establishment of wildlife sanctuaries in important nesting areas, and a series of tropical forest restoration programs in the Central Pacific coast.

AMS Radiocarbon Dating of Large Za Baobabs (Adansonia za) of Madagascar

PubMed Central

Patrut, Adrian; Patrut, Roxana T.; Danthu, Pascal; Leong Pock-Tsy, Jean-Michel; Rakosy, Laszlo; Lowy, Daniel A.; von Reden, Karl F.

2016-01-01

The article reports the radiocarbon investigation of Anzapalivoro, the largest za baobab (Adansonia za) specimen of Madagascar and of another za, namely the Big cistern baobab. Several wood samples collected from the large inner cavity and from the outer part/exterior of the tree were investigated by AMS (accelerator mass spectrometry) radiocarbon dating. For samples collected from the cavity walls, the age values increase with the distance into the wood up to a point of maximum age, after which the values decrease toward the outer part. This anomaly of age sequences indicates that the inner cavity of Anzapalivoro is a false cavity, practically an empty space between several fused stems disposed in a ring-shaped structure. The radiocarbon date of the oldest sample was 780 ± 30 bp, which corresponds to a calibrated age of around 735 yr. Dating results indicate that Anzapalivoro has a closed ring-shaped structure, which consists of 5 fused stems that close a false cavity. The oldest part of the biggest za baobab has a calculated age of 900 years. We also disclose results of the investigation of a second za baobab, the Big cistern baobab, which was hollowed out for water storage. This specimen, which consists of 4 fused stems, was found to be around 260 years old. PMID:26760300

AMS Radiocarbon Dating of Large Za Baobabs (Adansonia za) of Madagascar.

PubMed

Patrut, Adrian; Patrut, Roxana T; Danthu, Pascal; Leong Pock-Tsy, Jean-Michel; Rakosy, Laszlo; Lowy, Daniel A; von Reden, Karl F

2016-01-01

The article reports the radiocarbon investigation of Anzapalivoro, the largest za baobab (Adansonia za) specimen of Madagascar and of another za, namely the Big cistern baobab. Several wood samples collected from the large inner cavity and from the outer part/exterior of the tree were investigated by AMS (accelerator mass spectrometry) radiocarbon dating. For samples collected from the cavity walls, the age values increase with the distance into the wood up to a point of maximum age, after which the values decrease toward the outer part. This anomaly of age sequences indicates that the inner cavity of Anzapalivoro is a false cavity, practically an empty space between several fused stems disposed in a ring-shaped structure. The radiocarbon date of the oldest sample was 780 ± 30 bp, which corresponds to a calibrated age of around 735 yr. Dating results indicate that Anzapalivoro has a closed ring-shaped structure, which consists of 5 fused stems that close a false cavity. The oldest part of the biggest za baobab has a calculated age of 900 years. We also disclose results of the investigation of a second za baobab, the Big cistern baobab, which was hollowed out for water storage. This specimen, which consists of 4 fused stems, was found to be around 260 years old.

Internal cavity characteristics of northern long-eared bat (Myotis septentrionalis) maternity day-roosts

Treesearch

Alexander Silvis; R. Edward Thomas; W. Mark Ford; Eric R. Britzke; Meryl J. Friedrich

2015-01-01

This report discusses characteristics of seven tree cavities used as day-roosts by female northern long-eared bats (Myotis septentrionalis) during the maternity season in a deciduous forest in north-central Kentucky. Understanding the characteristics of cavities selected by bats will help us better understand the ecology of cavity roosting bats and...

Modeling nest survival of cavity-nesting birds in relation to postfire salvage logging

Treesearch

Vicki Saab; Robin E. Russell; Jay Rotella; Jonathan G. Dudley

2011-01-01

Salvage logging practices in recently burned forests often have direct effects on species associated with dead trees, particularly cavity-nesting birds. As such, evaluation of postfire management practices on nest survival rates of cavity nesters is necessary for determining conservation strategies. We monitored 1,797 nests of 6 cavity-nesting bird species: Lewis'...

Canopy structure and tree condition of young, mature, and old-growth Douglas-fir/hardwood forests

Treesearch

B.B. Bingham; J.O. Sawyer

1992-01-01

Sixty-two Douglas-fir/hardwood stands ranging from 40 to 560 years old were used to characterize the density; diameter, and height class distributions of canopy hardwoods and conifers in young (40 -100 yr), mature (101 - 200 yr) and old-growth (>200 yr) forests. The crown, bole, disease, disturbance, and cavity conditions of canopy conifers and hardwoods were...

Roost selection by Rafinesque’s big-eared bats (Corynorhinus rafinesquii) in a pristine habitat at three spatial scales

USGS Publications Warehouse

Lucas, Jessica S.; Loeb, Susan C.; Jodice, Patrick G.R.

2015-01-01

Although several studies have described roost use by Rafinesque's big-eared bats (Corynorhinus rafinesquii), few studies have examined roost selection. We examined roost use and selection by Rafinesque's big-eared bat at the tree, stand, and landscape scales during the maternity season in pristine old-growth habitat in the Coastal Plain of South Carolina. We located 43 roosts (14 maternity, 29 solitary) through cavity searches and radio-telemetry. Maternity colonies and solitary individuals selected roosts based on similar characteristics. The best model explaining roost selection by all bats included tree and stand characteristics; landscape factors had little influence on roost use. Bats selected large diameter trees in areas with a high density of trees with cavities in the surrounding area. Most roosts (67.4%) were in water tupelo (Nyssa aquatica) in semi-permanently flooded and saturated areas. Half of maternity roost cavities had upper bole openings whereas only 25.8% of solitary roosts had upper bole openings. Bats that roosted with maternity groups stayed in roosts for significantly shorter periods of time (1.3 ± 0.1 days) and used significantly more roost trees (5.0 ± 0.6 roosts) than adult males (3.8 ± 1.10 days, 2.3 ± 0.4 roosts, respectively). Maternity colony use of cavities with upper bole openings and shorter residency times suggest that predator avoidance may have been an important factor governing roosting behavior of maternity colonies in this area. Our results suggest that retention of large diameter, hollow trees in wetland areas will benefit Rafinesque's big-eared bat individuals and maternity colonies in this area.

Heart rot hotel: fungal communities in red-cockaded woodpecker excavations

Treesearch

Michelle A. Jusino; Daniel L. Lindner; Mark T. Banik; Jeffrey R. Walters

2015-01-01

Tree-cavity excavators such as woodpeckers are ecosystem engineers that have potentially complex but poorly documented associations with wood decay fungi. Fungi facilitate cavity excavation by preparing and modifying excavation sites for cavity excavators. Associations between fungi and endangered red-cockaded woodpeckers (RCWs) are particularly interesting because...

Firewood and wildlife

Treesearch

Andrew B. Carey; John D. Gill

1980-01-01

The increased demand for firewood threatens the habitat of many wildlife species. Dead or dying trees that commonly are cut for firewood are vital to wildlife species that nest in tree cavities. Likewise, healthy trees of many species preferred for firewood are important components of wildlife habitat. Tree species or species groups are value-rated for both firewood...

Isolation and identification of symbiotic bacteria from the skin, mouth, and rectum of wild and captive tree shrews.

PubMed

Li, Gui; Lai, Ren; Duan, Gang; Lyu, Long-Bao; Zhang, Zhi-Ye; Liu, Huang; Xiang, Xun

2014-11-18

Endosymbionts influence many aspects of their hosts' health conditions, including physiology, development, immunity, metabolism, etc. Tree shrews (Tupaia belangeri chinensis) have attracted increasing attention in modeling human diseases and therapeutic responses due to their close relationship with primates. To clarify the situation of symbiotic bacteria from their body surface, oral cavity, and anus, 12 wild and 12 the third generation of captive tree shrews were examined. Based on morphological and cultural characteristics, physiological and biochemical tests, as well as the 16S rDNA full sequence analysis, 12 bacteria strains were isolated and identified from the wild tree shrews: body surface: Bacillus subtilis (detection rate 42%), Pseudomonas aeruginosa (25%), Staphlococcus aureus (33%), S. Epidermidis (75%), Micrococcus luteus (25%), Kurthia gibsonii (17%); oral cavity: Neisseria mucosa (58%), Streptococcus pneumonia (17%); anus: Enterococcus faecalis (17%), Lactococus lactis (33%), Escherichia coli (92%), Salmonella typhosa (17%); whereas, four were indentified from the third generation captive tree shrews: body surface: S. epidermidis (75%); oral cavity: N.mucosa (67%); anus: L. lactis (33%), E. coli (100%). These results indicate that S. epidermidis, N. mucosa, L. lactis and E. coli were major bacteria in tree shrews, whereas, S. aureus, M. luteus, K. gibsonii, E. faecalis and S. typhosa were species-specific flora. This study facilitates the future use of tree shrews as a standard experimental animal and improves our understanding of the relationship between endosymbionts and their hosts.

A Minimally Invasive Method for Sampling Nest and Roost Cavities for Fungi: a Novel Approach to Identify the Fungi Associated with Cavity-Nesting Birds

Treesearch

Michelle A. Jusino; Daniel Lindner; John K. Cianchetti; Adam T. Grisé; Nicholas J. Brazee; Jeffrey R. Walters

2014-01-01

Relationships among cavity-nesting birds, trees, and wood decay fungi pose interesting management challenges and research questions in many systems. Ornithologists need to understand the relationships between cavity-nesting birds and fungi in order to understand the habitat requirements of these birds. Typically, researchers rely on fruiting body surveys to identify...

Characteristics of nest trees and nest sites of California spotted owls in coniferous forests of the southern Sierra Nevada

Treesearch

George N. Steger; Thomas E. Munton; Kenneth D. Johnson; Gary E. Eberlein

1997-01-01

We described 86 nest sites of California spotted owl (Sh-ix occidentalis occrdentalzs) and tested for differences in vegetation structure at nest locations rn conifer-dominated stands in 2 study areas, the Sierra National Forest (SNF) and Sequoia and Kings Canyon National Parks (SNP), California. All nests were between 1061 and 2414 m in elevation, 52 were side-cavity...

The longevity of large pine snags in eastern Texas

Treesearch

Richard N. Conner; Daniel Saenz

2005-01-01

Habitat for cavity-nesting wildlife is closely tied to the availability of standing dead trees (snags). Large snags (>40 cm dbh) are particularly important because they provide cavity- excavation substrate for both large and small cavity excavators. Historically in the southern United States, common belief has been that the utility of pine (Pinus...

Snag characteristics and dynamics following natural and artificially induced mortality in a managed loblolly pine forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zarnoch, Stanley J.; Vukovich, Mark A.; Kilgo, John C.

A 14-year study of snag characteristics was established in 41- to 44-year old loblolly pine (Pinus taeda L.) stands in southeastern USA. During the initial 5.5 years, no stand manipulation or unusually high-mortality events occurred. Afterwards, three treatments were applied consisting of trees thinned and removed, trees felled and not removed, and artificial creation of snags produced by girdling and herbicide injection. The thinned treatments were designed to maintain the same live canopy density as the snag-created treatment, disregarding snags that remained standing.We monitored snag height, diameter, density, volume, and bark percentage; the number of cavities was monitored in naturalmore » snags only. During the first 5.5 years, recruitment and loss rates were stable, resulting in a stable snag population. Large snags (≥25 cm diameter) were common, but subcanopy small snags (10 to <25 cm diameter) dominated numerically. Large natural snags survived (90% quantile) significantly longer (6.0–9.4 years) than smaller snags (4.4–6.9 years). Large artificial snags persisted the longest (11.8 years). Cavities in natural snags developed within 3 years following tree death. The mean number of cavities per snag was five times greater in large versus small snags and large snags were more likely to have multiple cavities, emphasizing the importance of mature pine stands for cavity-dependent wildlife species.« less

The longevity of large pine snags in eastern Texas

Treesearch

Richard N. Conner; Daniel Saenz

2005-01-01

Habitat for cavity-nesting wildlife is closely tied to the availability of standing dead trees (snags). Large snags (>40 cm dbh) are particularly important because they provide cavity- excavation substrate for both large and small cavity excavators. Historically in the southern United States, common belief has been that the utility of pine (Pinus spp.) snags for...

Factors influencing occupancy of nest cavities in recently burned forests

USGS Publications Warehouse

Saab, V.A.; Dudley, J.; Thompson, W.L.

2004-01-01

Recently burned forests in western North America provide nesting habitat for many species of cavity-nesting birds. However, little is understood about the time frame and the variables affecting occupancy of postfire habitats by these birds. We studied factors influencing the occupancy and reuse of nest cavities from 1-7 years after fire in two burned sites of western Idaho during 1994-1999. Tree cavities were used for nesting by 12 species of cavity nesters that were classified by the original occupant (strong excavator, weak excavator, or nonexcavator) of 385 nest cavities. We used logistic regression to model cavity occupancy by strong excavators (n = 575 trials) and weak excavators (n = 206 trials). Year after fire had the greatest influence on occupancy of nest cavities for both groups, while site of the burn was secondarily important in predicting occupancy by strong excavators and less important for weak excavators. Predicted probability of cavity occupancy was highest during the early years (1-4) after fire, declined over time (5-7 years after fire), and varied by site, with a faster decline in the smaller burned site with a greater mosaic of unburned forest. Closer proximity and greater interspersion of unburned forest (15% unburned) may have allowed a quicker recolonization by nest predators into the smaller burn compared to the larger burn with few patches of unburned forest (4% unburned). In combination with time and space effects, the predicted probability of cavity occupancy was positively affected by tree and nest heights for strong and weak excavators, respectively.

An experimental test of interspecific competition for red-cockaded woodpecker cavities

Treesearch

Susan C. Loeb; Robert G. Hooper

1997-01-01

To test whether the presence of nest boxes near red-cockaded woodpecker (RCW, Picoides borealis) cavity trees reduced cavity use by other species and improved RCW reproductive success on the Francis Marion National Forest in coastal South Carolina, the authors placed 3 nest bows in each of 62 experimenta1 boxes clusters and designated 61 clusters as controls....

Southern pine beetle-induced mortality of pines with natural and artificial red-cockaded woodpecker cavities in Texas

Treesearch

Richard N. Conner; Daniel Saenz; D. Craig Rudolph; Robert N. Coulson

1998-01-01

Southern pine beetle (Dendroctonus frontalis) infestation is the major cause of mortality for red-cockaded woodpecker (Picoides borealis) cavity trees in loblolly (Pinus taeda) and shortleaf (P. echinata) pines. Recent intensive management for red-cockaded woodpeckers includes the use of artificial cavity inserts. Between 1991 and 1996 the authors examined southern...

Raccoon Use of Den Trees and Plant Associations in Western Mesophytic Forests: Tree Attributes and Availability or Landscape Heterogeneity?

Treesearch

Winston P. Smith; Keith M. Endres

2012-01-01

We monitored 15 radio-collared raccoons (Procyon lotor) on Davies Island in March 1987 - May 1988 to determine the extent to which individual tree attributes or spatial configuration of plant associations (habitat types) across the land-scape influenced den use. Of 1091 verified den sites, 428 were in tree cavities. Raccoon occurrence among 4 cover...

Relative importance of social factors, conspecific density, and forest structure on space use by the endangered Red-cockaded Woodpecker: A new consideration for habitat restoration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garabedian, James E.; Moorman, Christopher E.; Peterson, M. Nils

Understanding how the interplay between social behaviors and habitat structure influences space use is important for conservation of birds in restored habitat. We integrated fine-grained LiDAR-derived habitat data, spatial distribution of cavity trees, and spatially explicit behavioral observations in a multi-scale model to determine the relative importance of conspecific density, intraspecific interactions, and the distribution of cavities on space use by Red-cockaded Woodpeckers (Picoides borealis) on 2 sites in South Carolina, USA. We evaluated candidate models using information theoretic methods. Top scale-specific models included effects of conspecific density and number of cavity tree starts within 200 m of Red-cockaded Woodpeckermore » foraging locations, and effects of the number of intraspecific interactions within 400 m of Red-cockaded Woodpecker foraging locations. The top multi-scale model for 22 of 34 Red-cockaded Woodpecker groups included covariates for the number of groups within 200 m of foraging locations and LiDARderived habitat with moderate densities of large pines (Pinus spp.) and minimal hardwood overstory. These results indicate distribution of neighboring groups was the most important predictor of space use once a minimal set of structural habitat thresholds was reached, and that placing recruitment clusters as little as 400 m from foraging partitions of neighboring groups may promote establishment of new breeding groups in unoccupied habitat. The presence of neighboring groups likely provides cues to foraging Red-cockaded Woodpeckers that facilitate prospecting prior to juvenile dispersal and, to a lesser extent, indicates high-quality forage resources. Careful consideration of local distribution of neighboring groups in potential habitat may improve managers’ ability to increase Red-cockaded Woodpecker density on restored landscapes and mitigate isolation of Red-cockaded Woodpecker groups, a problem that negatively affects fitness across the species’ range.« less

Habitat-Mediated Variation in the Importance of Ecosystem Engineers for Secondary Cavity Nesters in a Nest Web

PubMed Central

Robles, Hugo; Martin, Kathy

2014-01-01

Through physical state changes in biotic or abiotic materials, ecosystem engineers modulate resource availability to other organisms and are major drivers of evolutionary and ecological dynamics. Understanding whether and how ecosystem engineers are interchangeable for resource users in different habitats is a largely neglected topic in ecosystem engineering research that can improve our understanding of the structure of communities. We addressed this issue in a cavity-nest web (1999–2011). In aspen groves, the presence of mountain bluebird (Sialia currucoides) and tree swallow (Tachycineta bicolour) nests was positively related to the density of cavities supplied by northern flickers (Colaptes auratus), which provided the most abundant cavities (1.61 cavities/ha). Flickers in aspen groves provided numerous nesting cavities to bluebirds (66%) and swallows (46%), despite previous research showing that flicker cavities are avoided by swallows. In continuous mixed forests, however, the presence of nesting swallows was mainly related to cavity density of red-naped sapsuckers (Sphyrapicus nuchalis), which provided the most abundant cavities (0.52 cavities/ha), and to cavity density of hairy woodpeckers (Picoides villosus), which provided few (0.14 cavities/ha) but high-quality cavities. Overall, sapsuckers and hairy woodpeckers provided 86% of nesting cavities to swallows in continuous forests. In contrast, the presence of nesting bluebirds in continuous forests was associated with the density of cavities supplied by all the ecosystem engineers. These results suggest that (i) habitat type may mediate the associations between ecosystem engineers and resource users, and (ii) different ecosystem engineers may be interchangeable for resource users depending on the quantity and quality of resources that each engineer supplies in each habitat type. We, therefore, urge the incorporation of the variation in the quantity and quality of resources provided by ecosystem engineers across habitats into models that assess community dynamics to improve our understanding of the importance of ecosystem engineers in shaping ecological communities. PMID:24587211

Habitat-mediated variation in the importance of ecosystem engineers for secondary cavity nesters in a nest web.

PubMed

Robles, Hugo; Martin, Kathy

2014-01-01

Through physical state changes in biotic or abiotic materials, ecosystem engineers modulate resource availability to other organisms and are major drivers of evolutionary and ecological dynamics. Understanding whether and how ecosystem engineers are interchangeable for resource users in different habitats is a largely neglected topic in ecosystem engineering research that can improve our understanding of the structure of communities. We addressed this issue in a cavity-nest web (1999-2011). In aspen groves, the presence of mountain bluebird (Sialia currucoides) and tree swallow (Tachycineta bicolour) nests was positively related to the density of cavities supplied by northern flickers (Colaptes auratus), which provided the most abundant cavities (1.61 cavities/ha). Flickers in aspen groves provided numerous nesting cavities to bluebirds (66%) and swallows (46%), despite previous research showing that flicker cavities are avoided by swallows. In continuous mixed forests, however, the presence of nesting swallows was mainly related to cavity density of red-naped sapsuckers (Sphyrapicus nuchalis), which provided the most abundant cavities (0.52 cavities/ha), and to cavity density of hairy woodpeckers (Picoides villosus), which provided few (0.14 cavities/ha) but high-quality cavities. Overall, sapsuckers and hairy woodpeckers provided 86% of nesting cavities to swallows in continuous forests. In contrast, the presence of nesting bluebirds in continuous forests was associated with the density of cavities supplied by all the ecosystem engineers. These results suggest that (i) habitat type may mediate the associations between ecosystem engineers and resource users, and (ii) different ecosystem engineers may be interchangeable for resource users depending on the quantity and quality of resources that each engineer supplies in each habitat type. We, therefore, urge the incorporation of the variation in the quantity and quality of resources provided by ecosystem engineers across habitats into models that assess community dynamics to improve our understanding of the importance of ecosystem engineers in shaping ecological communities.

Seasonal and multiannual roost use by Rafinesque's Big-eared Bats in the Coastal Plain of South Carolina.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Loeb, Susan, C.; Zarnoch, Stanley, J.

Little is known about factors affecting year-round use of roosts by Rafinesque's big-eared bats (Corynorhinus rafinesquii) or the long-term fidelity of this species to anthropogenic or natural roosts. The objectives of this study were to test whether seasonal use of roosts by Rafinesque's big-eared bats varied with roost type and environmental conditions within and among seasons and to document multiannual use of natural and anthropogenic structures by this species. We inspected 4 bridges, 1 building, and 59 tree roosts possessing basal cavity openings; roosts were inspected at least once per week from May through October in every year from 2005more » through 2008 and once a month from November through April in every year from 2005 through 2009. We found that use of anthropogenic roosts was significantly greater than the use of tree roosts in summer but that the use of structure types did not differ in other seasons. There was significant seasonal variation in use of anthropogenic and tree roosts. Anthropogenic roost use was higher in summer than in all other seasons. There was no significant difference in tree use among spring, summer, and fall, but use in winter was significantly lower in 2 years of the study. Overall use of anthropogenic and tree roosts was positively related to minimum temperature, but the relationship between use of roosts and minimum temperature varied among seasons. Bats showed multiannual fidelity ({ge} 4 years) to all anthropogenic roosts and to some tree roosts, but fidelity of bats to anthropogenic roosts was greater and more consistent than to tree roosts. Our data indicate that Rafinesque's big-eared bats responded differently to environmental conditions among seasons; thus, a variety of structure types and characteristics are necessary for conservation of these bats. We suggest long-term protection of roost structures of all types is necessary for conservation of Rafinesque's big-eared bats in the southeast Coastal Plain.« less

Does Human-Induced Habitat Modification Influence the Impact of Introduced Species? A Case Study on Cavity-Nesting by the Introduced Common Myna ( Acridotheres tristis) and Two Australian Native Parrots

NASA Astrophysics Data System (ADS)

Grarock, Kate; Lindenmayer, David B.; Wood, Jeffrey T.; Tidemann, Christopher R.

2013-10-01

Introduced species pose a major threat to biodiversity across the globe. Understanding the impact of introduced species is critical for effective management. Many species around the world are reliant on tree cavities, and competition for these resources can be intense: threatening the survival of native species. Through the establishment of 225 nest boxes, we examined the relationship between tree density and the abundance and nesting success of three bird species in Canberra, Australia. The common myna ( Acridotheres tristis) is an introduced species in Australia, and the crimson rosella ( Platycercus elegans) and eastern rosella ( Platycercus eximius) are native species. We then investigated the impact of common myna nest box occupation on crimson rosella and eastern rosella abundance. Tree density significantly influenced the abundance and cavity-nesting of all three species. Common myna abundance (birds per square kilometer) was greatest at low tree density sites (101.9 ± 22.4) and declined at medium (45.4 ± 10.1) and high (9.7 ± 3.6) tree density sites. The opposite pattern was observed for the crimson rosella, with greater abundance (birds per square kilometer) at high tree density sites (83.9 ± 9.3), declining over medium (61.6 ± 6.4) and low (31.4 ± 3.9) tree density sites. The eastern rosella was more abundant at medium tree density sites (48.6 ± 8.0 birds per square kilometer). Despite the strong influence of tree density, we found a significant negative relationship between common myna nest box occupancy and the abundance of the crimson rosella ( F 1,13 = 7.548, P = 0.017) and eastern rosella ( F 1,13 = 9.672, P < 0.001) at some sites. We also observed a slight increase in rosella nesting interruptions by the common myna at lower tree densities (high: 1.3 % ± 1.3, medium: 6.6 % ± 2.2, low: 12.7 % ± 6.2), although this increase was not statistically significant ( F 2,40 = 2.435, P = 0.100). Our study provides the strongest evidence to date for the negative impact of the common myna on native bird abundance through cavity-nesting competition. However, due to the strong influence of habitat on species abundance and nesting, it is essential to investigate the impacts of introduced species in conjunction with habitat variation. We also suggest one component of introduced species management could include habitat restoration to reduce habitat suitability for introduced species.

Does human-induced habitat modification influence the impact of introduced species? A case study on cavity-nesting by the introduced common myna (Acridotheres tristis) and two Australian native parrots.

PubMed

Grarock, Kate; Lindenmayer, David B; Wood, Jeffrey T; Tidemann, Christopher R

2013-10-01

Introduced species pose a major threat to biodiversity across the globe. Understanding the impact of introduced species is critical for effective management. Many species around the world are reliant on tree cavities, and competition for these resources can be intense: threatening the survival of native species. Through the establishment of 225 nest boxes, we examined the relationship between tree density and the abundance and nesting success of three bird species in Canberra, Australia. The common myna (Acridotheres tristis) is an introduced species in Australia, and the crimson rosella (Platycercus elegans) and eastern rosella (Platycercus eximius) are native species. We then investigated the impact of common myna nest box occupation on crimson rosella and eastern rosella abundance. Tree density significantly influenced the abundance and cavity-nesting of all three species. Common myna abundance (birds per square kilometer) was greatest at low tree density sites (101.9 ± 22.4) and declined at medium (45.4 ± 10.1) and high (9.7 ± 3.6) tree density sites. The opposite pattern was observed for the crimson rosella, with greater abundance (birds per square kilometer) at high tree density sites (83.9 ± 9.3), declining over medium (61.6 ± 6.4) and low (31.4 ± 3.9) tree density sites. The eastern rosella was more abundant at medium tree density sites (48.6 ± 8.0 birds per square kilometer). Despite the strong influence of tree density, we found a significant negative relationship between common myna nest box occupancy and the abundance of the crimson rosella (F 1,13 = 7.548, P = 0.017) and eastern rosella (F 1,13 = 9.672, P < 0.001) at some sites. We also observed a slight increase in rosella nesting interruptions by the common myna at lower tree densities (high: 1.3% ± 1.3, medium: 6.6% ± 2.2, low: 12.7% ± 6.2), although this increase was not statistically significant (F 2,40 = 2.435, P = 0.100). Our study provides the strongest evidence to date for the negative impact of the common myna on native bird abundance through cavity-nesting competition. However, due to the strong influence of habitat on species abundance and nesting, it is essential to investigate the impacts of introduced species in conjunction with habitat variation. We also suggest one component of introduced species management could include habitat restoration to reduce habitat suitability for introduced species.

Nest-site competition and killing by invasive parakeets cause the decline of a threatened bat population

PubMed Central

Carrete, Martina; Ibáñez, Carlos; Juste, Javier; Tella, José L.

2018-01-01

The identification of effects of invasive species is challenging owing to their multifaceted impacts on native biota. Negative impacts are most often reflected in individual fitness rather than in population dynamics of native species and are less expected in low-biodiversity habitats, such as urban environments. We report the long-term effects of invasive rose-ringed parakeets on the largest known population of a threatened bat species, the greater noctule, located in an urban park. Both species share preferences for the same tree cavities for breeding. While the number of parakeet nests increased by a factor of 20 in 14 years, the number of trees occupied by noctules declined by 81%. Parakeets occupied most cavities previously used by noctules, and spatial analyses showed that noctules tried to avoid cavities close to parakeets. Parakeets were highly aggressive towards noctules, trying to occupy their cavities, often resulting in noctule death. This led to a dramatic population decline, but also an unusual aggregation of the occupied trees, probably disrupting the complex social behaviour of this bat species. These results indicate a strong impact through site displacement and killing of competitors, and highlight the need for long-term research to identify unexpected impacts that would otherwise be overlooked. PMID:29892437

Roost use by two sympatric species of Scotophilus in a natural environment

Treesearch

Ara Monadjem; Tara Raabe; Brian Dickerson; Nova Silvy; Robert McCleery

2010-01-01

Roost use by African bats is poorly known, particularly for those using cavities in trees. Two sympatric species of Scotophilus were fitted with transmitters and tracked to their respective roosts in a natural savanna site in Swaziland. Both species roosted exclusively in trees, apparently preferring Combretum imberbe trees with large girths. The conservation of such...

Field efficiency and bias of snag inventory methods

Treesearch

Robert S. Kenning; Mark J. Ducey; John C. Brissette; Jeffery H. Gove

2005-01-01

Snags and cavity trees are important components of forests, but can be difficult to inventory precisely and are not always included in inventories because of limited resources. We tested the application of N-tree distance sampling as a time-saving snag sampling method and compared N-tree distance sampling to fixed-area sampling and modified horizontal line sampling in...

Maintaining ecosystem resilience: functional responses of tree cavity nesters to logging in temperate forests of the Americas.

PubMed

Ibarra, José Tomás; Martin, Michaela; Cockle, Kristina L; Martin, Kathy

2017-06-30

Logging often reduces taxonomic diversity in forest communities, but little is known about how this biodiversity loss affects the resilience of ecosystem functions. We examined how partial logging and clearcutting of temperate forests influenced functional diversity of birds that nest in tree cavities. We used point-counts in a before-after-control-impact design to examine the effects of logging on the value, range, and density of functional traits in bird communities in Canada (21 species) and Chile (16 species). Clearcutting, but not partial logging, reduced diversity in both systems. The effect was much more pronounced in Chile, where logging operations removed critical nesting resources (large decaying trees), than in Canada, where decaying aspen Populus tremuloides were retained on site. In Chile, logging was accompanied by declines in species richness, functional richness (amount of functional niche occupied by species), community-weighted body mass (average mass, weighted by species densities), and functional divergence (degree of maximization of divergence in occupied functional niche). In Canada, clearcutting did not affect species richness but nevertheless reduced functional richness and community-weighted body mass. Although some cavity-nesting birds can persist under intensive logging operations, their ecosystem functions may be severely compromised unless future nest trees can be retained on logged sites.

Performance of a cavity-method-based algorithm for the prize-collecting Steiner tree problem on graphs

NASA Astrophysics Data System (ADS)

Biazzo, Indaco; Braunstein, Alfredo; Zecchina, Riccardo

2012-08-01

We study the behavior of an algorithm derived from the cavity method for the prize-collecting steiner tree (PCST) problem on graphs. The algorithm is based on the zero temperature limit of the cavity equations and as such is formally simple (a fixed point equation resolved by iteration) and distributed (parallelizable). We provide a detailed comparison with state-of-the-art algorithms on a wide range of existing benchmarks, networks, and random graphs. Specifically, we consider an enhanced derivative of the Goemans-Williamson heuristics and the dhea solver, a branch and cut integer linear programming based approach. The comparison shows that the cavity algorithm outperforms the two algorithms in most large instances both in running time and quality of the solution. Finally we prove a few optimality properties of the solutions provided by our algorithm, including optimality under the two postprocessing procedures defined in the Goemans-Williamson derivative and global optimality in some limit cases.

Thoracic Trauma.

PubMed

Dennis, Bradley M; Bellister, Seth A; Guillamondegui, Oscar D

2017-10-01

Management of chest trauma is integral to patient outcomes owing to the vital structures held within the thoracic cavity. Understanding traumatic chest injuries and appropriate management plays a pivotal role in the overall well-being of both blunt and penetrating trauma patients. Whether the injury includes rib fractures, associated pulmonary injuries, or tracheobronchial tree injuries, every facet of management may impact the short- and long-term outcomes, including mortality. This article elucidates the workup and management of the thoracic cage, pulmonary and tracheobronchial injuries. Copyright © 2017 Elsevier Inc. All rights reserved.

Use of trees by the Texas ratsnake (Elaphe obsoleta) in eastern Texas

Treesearch

Josh B. Pierce; Robert R. Fleet; Lance McBrayer; D. Craig Rudolph

2008-01-01

We present information on the use of trees by Elaphe obsoleta (Texas Ratsnake) in a mesic pine-hardwood forest in eastern Texas. Using radiotelemetry, seven snakes (3 females, 4 males) were relocated a total of 363 times from April 2004 to May 2005, resulting in 201 unique locations. Snakes selected trees containing cavities and used hardwoods and...

Methods for measuring populations of arboreal rodents.

Treesearch

Andrew B. Carey; Brian L. Biswell; Joseph W. Witt

1991-01-01

Three arboreal rodents are sensitive indicators of forest ecosystem function in the Pacific Northwest. The northern flying squirrel (Glaucomys sabrinus) is mycophagous, cavity-nesting, and a major prey of the spotted owl (Strix occidentalis). The red tree vole (Phenacomys longicaudus) is restricted to trees...

Microwave sensing of tree trunks

NASA Astrophysics Data System (ADS)

Jezova, Jana; Mertens, Laurence; Lambot, Sebastien

2015-04-01

The main subject of this research is the observation of the inner part of living tree trunks using ground-penetrating radar (GPR). Trees are everyday part of human life and therefore it is important to pay attention to the tree conditions. The most obvious consequence of the poor tree condition is dead or injury caused by falling tree. The trunk internal structure is divided into three main parts: heartwood, sapwood and bark, which make this medium highly anisotropic and heterogeneous. Furthermore, the properties of the wood are not only specie-dependent but also depend on genetic and on environmental conditions. In urban areas the main problem for the stability of the trees relies in the apparition of decays provoked by fungi, insect or birds. This results in cavities or decreasing of the support capacity of the tree. GPR has proved itself to be a very powerful electromagnetic tool for non-destructive detection of buried objects. Since the beginning of the 20th century it has been used in several different areas (archaeology, landmine detection, civil engineering, ...). GPR uses the principle of the scattering of the electromagnetic waves that are radiated from a transmitting antenna. Then the waves propagate through the medium and are reflected from the object and then they are received by a receiving antenna. The velocity of the scattered signal is determined primarily by the permittivity of the material. The optimal functionality of the GPR was investigated using the numerical simulation tool gprMax2D. This tool is based on a Finite-Difference Time-Domain (FDTD) numerical model. Subsequently, the GPR functionality was tested using the laboratory model of a decayed tree trunk. Afterwards, the results and lessons learnt in the simplified tests will be used in the processing of the real data and will help to achieve deeper understanding of them. The laboratory model of the tree trunk was made by plastic or carton pipes and filled by sand. Space inside the model was divided into three sections to separate parts with different moisture (heartwood and sapwood) or empty space (decays). For easier manipulation with the antenna we developed a special ruler for measuring the distance along the scans. Instead of the surveying wheel we read the distance with a camera, which was fixed on the antenna and focused on the ruler with a binary pattern. Hence, during whole measurement and the data processing we were able to identify an accurate position on the tree in view of the scan. Some preliminary measurements on the trees were also conducted. They were performed using a GSSI 900 MHz antenna. Several tree species (beech, horse-chestnut, birch, ...) in Louvain-la-Neuve and Brussels, Belgium, have been investigated to see the internal structure of the tree decays. The measurements were carried out mainly by circumferential measurement around the trunk and also by vertical measurement along the trunk for approximate detection of the cavity. The comparison between the numerical simulations, simplified tree trunk model and real data from trees is presented. This research is funded by the Fonds de la Recherche Scientifique (FNRS, Belgium) and benefits from networking activities carried out within the EU COST Action TU1208 "Civil Engineering Applications of Ground Penetrating Radar".

Heartwood, sapwood, and fungal decay associated with red-cockaded woodpecker cavity trees

Treesearch

Richard N. Conner; D. Craig Rudolph; Daniel Saenz; Richard R. Schaefer

1994-01-01

Provision of suitable sites for red-cockaded woodpecker (Picotdes borealis) cavity excavation is essential for successful management of the woodpecker. To evaluate internal characteristics of pines used by the woodpecker, we increment-cored longleaf pines (Pinus palustris) to determine heartwood diameter, sapwood thickness, and...

A bark-shaving technique to deter rat snakes from climbing red-cockaded woodpecker cavity trees

Treesearch

Daniel Saenz; Christopher S. Collins; Richard N. Conner

1999-01-01

We developed a bark-shaving technique to deter rat snakes (Elaphe obsoleta) from climbing red-cockaded woodpecker (Picoides borealis) trees as an aesthetically pleasing, more cost-effective, and safer alternative to other snake excluder devices. We used a drawknife to carefully shave the bark around the circumference of 4 treatment trees in a l-m-wide band to...

Nest temperature fluctuations in a cavity nester, the southern ground-hornbill.

PubMed

Combrink, L; Combrink, H J; Botha, A J; Downs, C T

2017-05-01

Southern ground-hornbills Bucorvus leadbeateri inhabit savanna and bushveld regions of South Africa. They nest in the austral summer, which coincides with the wet season and hottest daytime temperatures in the region. They are secondary cavity nesters and typically nest in large cavities in trees, cliffs and earth banks, but readily use artificial nest boxes. Southern ground-hornbills are listed as Endangered in South Africa, with reintroductions into suitable areas highlighted as a viable conservation intervention for the species. Nest microclimate, and the possible implications this may have for the breeding biology of southern ground-hornbills, have never been investigated. We used temperature dataloggers to record nest cavity temperature and ambient temperature for one artificial and 11 natural southern ground-hornbill tree cavity nests combined, spanning two breeding seasons. Mean hourly nest temperature, as well as mean minimum and mean maximum nest temperature, differed significantly between southern ground-hornbill nests in both breeding seasons. Mean nest temperature also differed significantly from mean ambient temperature for both seasons. Natural nest cavities provided a buffer against the ambient temperature fluctuations. The artificial nest provided little insulation against temperature extremes, being warmer and cooler than the maximum and minimum local ambient temperatures, respectively. Nest cavity temperature was not found to have an influence on the breeding success of the southern ground-hornbill groups investigated in this study. These results have potentially important implications for southern ground-hornbill conservation and artificial nest design, as they suggest that the birds can tolerate greater nest cavity temperature extremes than previously thought. Copyright © 2017 Elsevier Ltd. All rights reserved.

Comparison of chest CT findings in nontuberculous mycobacterial diseases vs. Mycobacterium tuberculosis lung disease in HIV-negative patients with cavities.

PubMed

Kim, Cherry; Park, So Hee; Oh, Sang Young; Kim, Sung-Soo; Jo, Kyung-Wook; Shim, Tae Sun; Kim, Mi Young

2017-01-01

This article focuses on the differences between CT findings of HIV-negative patients who have cavities with nontuberculous mycobacteria (NTM) disease and those with Mycobacterium tuberculosis infections (TB). We retrospectively reviewed 128 NTM disease patients (79 males and 49 females) with cavities in chest CT, matched for age and gender with 128 TB patients in the same period. Sputum cultures of all patients were positive for pathogens. Two independent chest radiologists evaluated the characteristics of the largest cavity and related factors. Interobserver agreement was excellent (κ value, 0.853-0.938). Cavity walls in NTM disease were significantly thinner (6.9±4 mm vs 10.9±6 mm, P<0.001) and more even (the ratio of thickness, 2.6±1 vs 3.7±2, P<0.001) than those in TB. The thickening of adjacent pleura next to the cavity was also significantly thicker in NTM than TB (P<0.001). However, in the multivariate analysis, thickening of adjacent pleura was the only significant factor among the representative cavity findings (Odds ratio [OR], 6.49; P<0.001). In addition, ill-defined tree-in-bud nodules (OR, 8.82; P<0.001), number of non-cavitary nodules (≥10mm) (OR, 0.72; P = 0.003), and bronchiectasis in the RUL (OR, 5.3; P = 0.002) were significantly associated ancillary findings with NTM disease in the multivariate analysis. The major cavities in NTM disease generally have thinner and more even walls than those in TB. When cavities are associated with adjacent pleural thickening, ill-defined satellite tree-in-bud nodules, or fewer non-cavitary nodules ≥10 mm, these CT findings are highly suggestive of NTM disease rather than TB.

Creating snags with explosives.

Treesearch

Evelyn L. Bull; Arthur D. Partridge; Wayne G. Williams

1981-01-01

The tops of ponderosa pine (Pinus ponderosa) trees were blown off with dynamite to create nest sites for cavity-nesting wildlife. The procedure included drilling a hole almost through the trunk, inserting the dynamite, and setting the charge with primacord and fuse. Trees were simultaneously innoculated with a decay organism. The average cost was $...

Optical fiber-fault surveillance for passive optical networks in S-band operation window

NASA Astrophysics Data System (ADS)

Yeh, Chien-Hung; Chi, Sien

2005-07-01

An S-band (1470 to 1520 nm) fiber laser scheme, which uses multiple fiber Bragg grating (FBG) elements as feedback elements on each passive branch, is proposed and described for in-service fault identification in passive optical networks (PONs). By tuning a wavelength selective filter located within the laser cavity over a gain bandwidth, the fiber-fault of each branch can be monitored without affecting the in-service channels. In our experiment, an S-band four-branch monitoring tree-structured PON system is demonstrated and investigated experimentally.

Optical fiber-fault surveillance for passive optical networks in S-band operation window.

PubMed

Yeh, Chien-Hung; Chi, Sien

2005-07-11

An S-band (1470 to 1520 nm) fiber laser scheme, which uses multiple fiber Bragg grating (FBG) elements as feedback elements on each passive branch, is proposed and described for in-service fault identification in passive optical networks (PONs). By tuning a wavelength selective filter located within the laser cavity over a gain bandwidth, the fiber-fault of each branch can be monitored without affecting the in-service channels. In our experiment, an S-band four-branch monitoring tree-structured PON system is demonstrated and investigated experimentally.

Interphyletic relationships in the use of nesting cavities: mutualism, competition and amensalism among hymenopterans and vertebrates

NASA Astrophysics Data System (ADS)

Veiga, José P.; Wamiti, Wanyoike; Polo, Vicente; Muchai, Muchane

2013-09-01

Although competition is usually assumed to be the most common interaction between closely related organisms that share limiting resources, the relationships linking distant taxa that use the same nesting sites are poorly understood. In the present study, we examine the interactions among social hymenopterans (honeybees and wasps) and vertebrates in tropical ecosystems of East Africa. By analysing the preferences of these three groups for nest boxes that were empty or previously occupied by a different taxon, we try to establish whether the relationships among them are commensal, mutualistic, competitive or amensal. Vertebrates and honeybees selected nest boxes that had previously been occupied by the other, which suggests that each obtains some benefit from the other. This relationship can be considered mutualistic, although a mutual preference for each others' nests does not exclude a competitive interaction. Vertebrates and wasps preferred nest boxes not previously occupied by the other, which suggests that they compete for tree cavities. Finally, wasps seemed to completely refuse cavities previously used by honeybees, while the bees occupied cavities regardless of whether they had been previously used by wasps, an apparently amensal relationship. These results indicate that the interdependence between distantly related taxa is stronger and more complex than previously described, which may have important implications for population dynamics and community structure.

Woodpecker woes: the right tree can be hard to find

Treesearch

Natasha Vizcarra; Teresa. Lorenz

2017-01-01

Woodpeckers and other cavity-excavating birds worldwide are keystone species. These birds excavate their nests out of solid wood, and because their nests are often well protected against predators and the environment, other species use and compete for their old, vacant nests. The presence of cavity-excavating birds in forests has far-reaching effects on species...

Meta-analysis of summer roosting characteristics of two species of Myotis bats

Treesearch

Michael Lacki; Daniel R. Cox; Matthew B. Dickinson

2009-01-01

We compared roost site characteristics of the Indiana bat (Myotis sodalis) and northern bat (M. septentrionalis), which form maternity colonies in cavities and beneath bark of dead (snags) and living trees in eastern North American forests. We used published data (n = 28 sources; n = 1145 roost trees) from studies completed where...

There's Life in Those Dead Logs!

ERIC Educational Resources Information Center

Biggs, Devin; Miller, Todd; Hall, Dee

2006-01-01

Although it is unspectacular in appearance, dead wood is one of the most ecologically important resources in forests. Fallen logs, dead standing trees, stumps, and even cavities in live trees fulfill a wide range of roles. Prominent among these is that they provide habitat for many organisms, especially insects. Fourth-grade students at Fox…

The ecology, distribution, conservation and management of large old trees.

PubMed

Lindenmayer, David B; Laurance, William F

2017-08-01

Large old trees are some of the most iconic biota on earth and are integral parts of many terrestrial ecosystems including those in tropical, temperate and boreal forests, deserts, savannas, agro-ecological areas, and urban environments. In this review, we provide new insights into the ecology, function, evolution and management of large old trees through broad cross-disciplinary perspectives from literatures in plant physiology, growth and development, evolution, habitat value for fauna and flora, and conservation management. Our review reveals that the diameter, height and longevity of large old trees varies greatly on an inter-specific basis, thereby creating serious challenges in defining large old trees and demanding an ecosystem- and species-specific definition that will only rarely be readily transferable to other species or ecosystems. Such variation is also manifested by marked inter-specific differences in the key attributes of large old trees (beyond diameter and height) such as the extent of buttressing, canopy architecture, the extent of bark micro-environments and the prevalence of cavities. We found that large old trees play an extraordinary range of critical ecological roles including in hydrological regimes, nutrient cycles and numerous ecosystem processes. Large old trees strongly influence the spatial and temporal distribution and abundance of individuals of the same species and populations of numerous other plant and animal species. We suggest many key characteristics of large old trees such as extreme height, prolonged lifespans, and the presence of cavities - which confer competitive and evolutionary advantages in undisturbed environments - can render such trees highly susceptible to a range of human influences. Large old trees are vulnerable to threats ranging from droughts, fire, pests and pathogens, to logging, land clearing, landscape fragmentation and climate change. Tackling such diverse threats is challenging because they often interact and manifest in different ways in different ecosystems, demanding targeted species- or ecosystem-specific responses. We argue that novel management actions will often be required to protect existing large old trees and ensure the recruitment of new cohorts of such trees. For example, fine-scale tree-level conservation such as buffering individual stems will be required in many environments such as in agricultural areas and urban environments. Landscape-level approaches like protecting places where large old trees are most likely to occur will be needed. However, this brings challenges associated with likely changes in tree distributions associated with climate change, because long-lived trees may presently exist in places unsuitable for the development of new cohorts of the same species. Appropriate future environmental domains for a species could exist in new locations where it has never previously occurred. The future distribution and persistence of large old trees may require controversial responses including assisted migration via seed or seedling establishment in new locales. However, the effectiveness of such approaches may be limited where key ecological features of large old trees (such as cavity presence) depend on other species such as termites, fungi and bacteria. Unless other species with similar ecological roles are present to fulfil these functions, these taxa might need to be moved concurrently with the target tree species. © 2016 Cambridge Philosophical Society.

Snow distribution and heat flow in the taiga

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sturm, M.

1992-05-01

The trees of the taiga intercept falling snow and cause it to become distributed in an uneven fashion. Around aspen and birch, cone-shaped accumulations form. Beneath large spruce trees, the snow cover is depleted, forming a bowl-shaped depression called a tree well. Small spruce trees become covered with snow, creating cavities that funnel cold air to the snow/ground interface. The depletion of snow under large spruce trees results in greater heat loss from the ground. A finite difference model suggests that heat flow from tree wells can be more than twice that of undisturbed snow. In forested watersheds, this increasemore » can be a significant percentage of the total winter energy exchange.« less

Phylogenetic analysis of honey bee behavioral evolution.

PubMed

Raffiudin, Rika; Crozier, Ross H

2007-05-01

DNA sequences from three mitochondrial (rrnL, cox2, nad2) and one nuclear gene (itpr) from all 9 known honey bee species (Apis), a 10th possible species, Apis dorsata binghami, and three outgroup species (Bombus terrestris, Melipona bicolor and Trigona fimbriata) were used to infer Apis phylogenetic relationships using Bayesian analysis. The dwarf honey bees were confirmed as basal, and the giant and cavity-nesting species to be monophyletic. All nodes were strongly supported except that grouping Apis cerana with A. nigrocincta. Two thousand post-burnin trees from the phylogenetic analysis were used in a Bayesian comparative analysis to explore the evolution of dance type, nest structure, comb structure and dance sound within Apis. The ancestral honey bee species was inferred with high support to have nested in the open, and to have more likely than not had a silent vertical waggle dance and a single comb. The common ancestor of the giant and cavity-dwelling bees is strongly inferred to have had a buzzing vertical directional dance. All pairwise combinations of characters showed strong association, but the multiple comparisons problem reduces the ability to infer associations between states between characters. Nevertheless, a buzzing dance is significantly associated with cavity-nesting, several vertical combs, and dancing vertically, a horizontal dance is significantly associated with a nest with a single comb wrapped around the support, and open nesting with a single pendant comb and a silent waggle dance.

Covariance patterns among birds and vegetation in a California oak woodland

Treesearch

Randolph A. Wilson; Patricia Manley; Barry R. Noon

1991-01-01

We sampled characteristics of vegetation and estimated abundances of bird species on 23 plots representing a continuum of tree densities of the blue oak phase of the Coast Range foothill woodland near Hopland, California. Fifty-one bird species were found breeding. Cavity-nesters dominated the bird community in number of species and individuals. Cavity nesters used a...

Characteristics of aspen infected with heartrot: Implications for cavity-nesting birds

Treesearch

Chris Witt

2010-01-01

Phellinus tremulae is an important fungal decay agent common to aspen and a critical component to the cavity-nesting bird complex found in western aspen stands. Little information exists on the conditions that facilitate infection and spread of P. tremulae in aspen forests. I used Forest Inventory and Analysis (FIA) data to explore the relationships of several tree and...

SOD-induced changes in foraging and nesting behavior of insectivorous, cavity-nesting birds

Treesearch

Kyle Apigian; Barbara Allen-Diaz

2006-01-01

Sudden oak death (SOD) is a tree disease caused by a recently described pathogen, Phytophthora ramorum. The disease affects dozens of plant species, but its effects are particularly pronounced in stands of coast live oak (Quercus agrifolia), often resulting in large stands with dead canopies and many downed trees. Such disease-...

Biology of bats in Douglas-fir forests.

Treesearch

Robin E. Christy; Stephen D. West

1993-01-01

Twelve species of bats occur in Douglas-fir forests of the Pacific Northwest, of which nine are known to roost in tree cavities, bark crevices, or foliage, and several are closely associated with old-growth forests. Thus bat populations may be detrimentally affected by forest management practices involving the removal of large, old trees and snags. We review the life...

Snag densities in old-growth stands on the Gasquet Ranger District, Six Rivers National Forest, California

Treesearch

Thomas M. Jimerson

1989-01-01

Baseline levels for densities of snags (standing dead trees) wered etermined in undisturbed old-growth stands on the Gasquet Ranger District. Six Riven National Forest, California. Snag species, number, diameter at breast height (d.b.h.), height, cavity type, cavity use, decay class, and snag origin were recorded on 317 plots over a 2-year period. The 2121 snags...

Snag abundance for primary cavity-nesting birds on nonfederal forest lands in Oregon and Washington.

Treesearch

Janet L. Ohmann; William C. McComb; Abdel Azim Zumrawi

1994-01-01

More than 100 species of vertebrates in the Pacific Northwest use standing dead trees (snags) at one time or another in their lifecycle (Thomas et al. 1979a, Neitro et al. 1985). With few exceptions, investigators have found significant correlations between snag density and the abundance of primary cavity-nesters in North American coniferous forests (Raphael and White...

Development and Validation of Spatially Explicit Habitat Models for Cavity-nesting Birds in Fishlake National Forest, Utah

Treesearch

Randall A., Jr. Schultz; Thomas C., Jr. Edwards; Gretchen G. Moisen; Tracey S. Frescino

2005-01-01

The ability of USDA Forest Service Forest Inventory and Analysis (FIA) generated spatial products to increase the predictive accuracy of spatially explicit, macroscale habitat models was examined for nest-site selection by cavity-nesting birds in Fishlake National Forest, Utah. One FIA-derived variable (percent basal area of aspen trees) was significant in the habitat...

Study of the flow unsteadiness in the human airway using large eddy simulation

NASA Astrophysics Data System (ADS)

Bernate, Jorge A.; Geisler, Taylor S.; Padhy, Sourav; Shaqfeh, Eric S. G.; Iaccarino, Gianluca

2017-08-01

The unsteady flow in a patient-specific geometry of the airways is studied. The geometry comprises the oral cavity, orophrarynx, larynx, trachea, and the bronchial tree extending to generations 5-8. Simulations are carried out for a constant inspiratory flow rate of 60 liters/min, corresponding to a Reynolds number of 4213 for a nominal tracheal diameter of 2 cm. The computed mean flow field is compared extensively with magnetic resonance velocimetry measurements by Banko et al. [Exp. Fluids 56, 117 (2015), 10.1007/s00348-015-1966-y] carried out in the same computed-tomography-based geometry, showing good agreement. In particular, we focus on the dynamics of the flow in the bronchial tree. After becoming unsteady at a constriction in the oropharynx, the flow is found to be chaotic, exhibiting fluctuations with broad-band spectra even at the most distal airways in which the Reynolds numbers are as low as 300. An inertial range signature is present in the trachea but not in the bronchial tree where a narrower range of scales is observed. The unsteadiness is attributed to the convection of turbulent structures produced at the larynx as well as to local kinetic energy production throughout the bronchial tree. Production occurs predominantly at shear layers bounding geometry-induced separation regions.

The importance of old growth refugia in the Yukon boreal forest to cavity-nesting owls

Treesearch

D. H. Mossop

1997-01-01

The Yukon's boreal forest is a slow-growing yet dynamic system greatly affected by wildfire. Trees of a diameter and age to accommodate cavity-nesting owls and other larger birds should be rare. An experiment was conducted by erecting just over 100 nest boxes throughout the southern Yukon to test the availability of nest holes for small owls. After 5 years an...

Responses of cavity-nesting birds to stand-replacement fire and salvage logging in ponderosa pine/Douglas-fir forests of southwestern Idaho

Treesearch

Victoria A. Saab; Jonathan G. Dudley

1998-01-01

From 1994 to 1996, researchers monitored 695 nests of nine cavity-nesting bird species and measured vegetation at nest sites and at 90 randomly located sites in burned ponderosa pine forests of southwestern Idaho. Site treatments included two types of salvage logging, and unlogged controls. All bird species selected nest sites with higher tree densities, larger...

Natural oscillations of a gas bubble in a liquid-filled cavity located in a viscoelastic medium

NASA Astrophysics Data System (ADS)

Doinikov, Alexander A.; Marmottant, Philippe

2018-04-01

The present study is motivated by cavitation phenomena that occur in the stems of trees. The internal pressure in tree conduits can drop down to significant negative values. This drop gives rise to cavitation bubbles, which undergo high-frequency eigenmodes. The aim of the present study is to determine the parameters of the bubble natural oscillations. To this end, a theory is developed that describes the pulsation of a spherical bubble located at the center of a spherical cavity surrounded by an infinite solid medium. It is assumed that the medium inside the bubble is a gas-vapor mixture, the cavity is filled with a compressible viscous liquid, and the medium surrounding the cavity behaves as a viscoelastic solid. The theoretical solution takes into account the outgoing acoustic wave produced by the bubble pulsation, the incoming wave caused by reflection from the liquid-solid boundary, and the outgoing wave propagating in the solid. A dispersion equation for the calculation of complex wavenumbers of the bubble eigenmodes is derived. Approximate analytical solutions to the dispersion equation are found. Numerical simulations are performed to reveal the effect of different physical parameters on the resonance frequency and the attenuation coefficient of the bubble oscillations.

Limited acclimation in leaf anatomy to experimental drought in tropical rainforest trees

PubMed Central

Binks, Oliver; Meir, Patrick; Rowland, Lucy; da Costa, Antonio Carlos Lola; Vasconcelos, Steel Silva; de Oliveira, Alex Antonio Ribeiro; Ferreira, Leandro; Mencuccini, Maurizio

2016-01-01

Dry periods are predicted to become more frequent and severe in the future in some parts of the tropics, including Amazonia, potentially causing reduced productivity, higher tree mortality and increased emissions of stored carbon. Using a long-term (12 year) through-fall exclusion (TFE) experiment in the tropics, we test the hypothesis that trees produce leaves adapted to cope with higher levels of water stress, by examining the following leaf characteristics: area, thickness, leaf mass per area, vein density, stomatal density, the thickness of palisade mesophyll, spongy mesophyll and both of the epidermal layers, internal cavity volume and the average cell sizes of the palisade and spongy mesophyll. We also test whether differences in leaf anatomy are consistent with observed differential drought-induced mortality responses among taxa, and look for relationships between leaf anatomy, and leaf water relations and gas exchange parameters. Our data show that trees do not produce leaves that are more xeromorphic in response to 12 years of soil moisture deficit. However, the drought treatment did result in increases in the thickness of the adaxial epidermis (TFE: 20.5 ± 1.5 µm, control: 16.7 ± 1.0 µm) and the internal cavity volume (TFE: 2.43 ± 0.50 mm3 cm−2, control: 1.77 ± 0.30 mm3 cm−2). No consistent differences were detected between drought-resistant and drought-sensitive taxa, although interactions occurred between drought-sensitivity status and drought treatment for the palisade mesophyll thickness (P = 0.034) and the cavity volume of the leaves (P = 0.025). The limited response to water deficit probably reflects a tight co-ordination between leaf morphology, water relations and photosynthetic properties. This suggests that there is little plasticity in these aspects of plant anatomy in these taxa, and that phenotypic plasticity in leaf traits may not facilitate the acclimation of Amazonian trees to the predicted future reductions in dry season water availability. PMID:27614360

Managing heart rot in live trees for wildlife habitat in young-growth forests of coastal Alaska

Treesearch

Paul E. Hennon; Robin L. Mulvey

2014-01-01

Stem decays of living trees, known also as heart rots, are essential elements of wildlife habitat, especially for cavity-nesting birds and mammals. Stem decays are common features of old-growth forests of coastal Alaska, but are generally absent in young, managed forests. We offer several strategies for maintaining or restoring fungal stem decay in these managed...

Seasonal use of red-cockaded woodpecker cavities by southern flying squirrels.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Loeb, Susan C; Ruth, Deanna L

2004-12-31

Loeb, Susan C., and Deanna L. Ruth. 2004. Seasonal use of red-cockaded woodpecker cavities by southern flying squirrels. In: Red-cockaded woodpecker; Road to Recovery. Proceedings of the 4th Red-cockaded woodpecker Symposium. Ralph Costa and Susan J. Daniels, eds. Savannah, Georgia. January, 2003. Chapter 8. Cavities, Cavity Trees, and Cavity Communities. Pp 501-502. Abstract: Southern flying squirrels can significantly impact red-cockaded woodpecker reproductive success (Laves and Loeb 1999). Thus exclusion or removal of flying squirrels from red-cockaded woodpecker cavities and clusters may be warranted in small woodpecker populations (U.S. Fish and Wildlife Service 2003). However, development of effective and efficient protocolsmore » for southern flying squirrel control requires an understanding of the seasonal dynamics of southern flying squirrel cavity use. Most studies of southern flying squirrel use of red-cockaded woodpecker cavities have been conducted during spring (e.g., Harlow and Lennartz 1983, Rudolph et al. 1990a, Loeb 1993) and no studies have examined the effects of long term flying squirrel control on subsequent cavity use. The objectives of this study were to determine: (1) whether flying squirrel use of red-cockaded woodpecker cavities varies with season or cavity type, and (2) the long term effect of continuous squirrel removal.« less

Tree-Roost Characteristics of Subadult and Female Adult Bats (Nyctieius humeralis) in the Upper Coastal Plain of South Carolina.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Menzel, M.A.; Carter, T.C.; Ford, W.M.

Tree-roost of evening bats were identified by radio tracking of 14 individuals at the SRS. Bats roosted in longleaf pine cavities under exfoliating bark in snags near beaver ponds. The roosting occurred in open park like stands. No evening bats roosted in the more dense bottomland hardwood stands or mixed pine hardwood stands. None were observed in loblolly stands.

Pre- and post-experimental manipulation assessments confirm the increase in number of birds due to the addition of nest boxes.

PubMed

Cuatianquiz Lima, Cecilia; Macías Garcia, Constantino

2016-01-01

Secondary cavity nesting (SCN) birds breed in holes that they do not excavate themselves. This is possible where there are large trees whose size and age permit the digging of holes by primary excavators and only rarely happens in forest plantations, where we expected a deficit of both breeding holes and SCN species. We assessed whether the availability of tree cavities influenced the number of SCNs in two temperate forest types, and evaluated the change in number of SCNs after adding nest boxes. First, we counted all cavities within each of our 25-m radius sampling points in mature and young forest plots during 2009. We then added nest boxes at standardised locations during 2010 and 2011 and conducted fortnightly bird counts (January-October 2009-2011). In 2011 we added two extra plots of each forest type, where we also conducted bird counts. Prior to adding nest boxes, counts revealed more SCNs in mature than in young forest. Following the addition of nest boxes, the number of SCNs increased significantly in the points with nest boxes in both types of forest. Counts in 2011 confirmed the increase in number of birds due to the addition of nest boxes. Given the likely benefits associated with a richer bird community we propose that, as is routinely done in some countries, forest management programs preserve old tree stumps and add nest boxes to forest plantations in order to increase bird numbers and bird community diversity.

Summer Roost Tree Selection by Eastern Red, Seminole, and Evening Bats in the Upper Coastal Plain of South Carolina

DOE Office of Scientific and Technical Information (OSTI.GOV)

Menzel, M.A.; Carter, T.C.; Ford, W.M.

Radiotraction of six eastern red bats, six seminole bats and twenty-four evening bats to 55, 61, and 65 day roosts during 1996 to 1997 in the Upper Coastal Plain of South Carolina. For each species, testing was done for differences between used roost trees and randomly located trees. Also tested for differences between habitat characteristics surrounding roost trees and randomly located trees. Eastern Red and Seminole bats generally roosted in canopies of hardwood and pine while clinging to foilage and small branches. Evening bats roosted in cavities or under exfoliating bark in pines and dead snags. Forest management strategies namedmore » within the study should be beneficial for providing roosts in the Upper Coastal Plain of South Carolina.« less

Integrating conservation management, species protection, and economic viability into sustainable land use practices for the Cerulean Warbler (Setophaga cerulea) in the Appalachian and Northern Andes Mountains

Treesearch

Brian W. Smith; Jorge Botero; Jeff L. Larkin; Amanda D. Rodewald; Petra B. Wood; Patrick N. Angel; Scott E. Eggerud

2012-01-01

We monitored 15 radio-collared raccoons (Procyon lotor) on Davies Island in March 1987 - May 1988 to determine the extent to which individual tree attributes or spatial configuration of plant associations (habitat types) across the land-scape influenced den use. Of 1091 verified den sites, 428 were in tree cavities. Raccoon occurrence among 4 cover...

Temperature Structure of a Coronal Cavity

NASA Technical Reports Server (NTRS)

Kucera, T. A.; Gibson, S. E.; Schmit, D. J.

2011-01-01

we analyze the temperature structure of a coronal cavity observed in Aug. 2007. coronal cavities are long, low-density structures located over filament neutral lines and are often seen as dark elliptical features at the solar limb in white light, EUV and x-rays. when these structures erupt they form the cavity portions of CMEs. It is important to establish the temperature structure of cavities in order to understand the thermodynamics of cavities in relation to their three-dimensional magnetic structure. To analyze the temperature we compare temperature ratios of a series of iron lines observed by the Hinode/EUv Imaging spectrometer (EIS). We also use those lines to constrain a forward model of the emission from the cavity and streamer. The model assumes a coronal streamer with a tunnel-like cavity with elliptical cross-section and a Gaussian variation of height along the tunnel lenth. Temperature and density can be varied as a function of altitude both in the cavity and streamer. The general cavity morphology and the cavity and streamer density have already been modeled using data from STEREO's SECCHI/EUVI and Hinode/EIS (Gibson et al 2010 and Schmit & Gibson 2011).

α,β-Unsaturated monoterpene acid glucose esters: structural diversity, bioactivities and functional roles.

PubMed

Goodger, Jason Q D; Woodrow, Ian E

2011-12-01

The glycosylation of lipophilic small molecules produces many important plant secondary metabolites. The majority of these are O-glycosides with relatively fewer occurring as glucose esters of aromatic or aliphatic acids. In particular, monoterpene acid glucose esters have much lower structural diversity and distribution compared to monoterpene glycosides. Nevertheless, there have been over 20 monoterpene acid glucose esters described from trees in the genus Eucalyptus (Myrtaceae) in recent years, all based on oleuropeic acid, menthiafolic acid or both. Here we review all of the glucose esters containing these monoterpenoids identified in plants to date. Many of the compounds contain phenolic aglycones and all contain at least one α,β-unsaturated carbonyl, affording a number of important potential therapeutic reactivities such as anti-tumor promotion, carcinogenesis suppression, and anti-oxidant and anti-inflammatory activities. Additional properties such as cytotoxicity, bitterness, and repellency are suggestive of a role in plant defence, but we also discuss their localization to the exterior of foliar secretory cavity lumina, and suggest they may also protect secretory cells from toxic terpenes housed within these structures. Finally we discuss how the use of a recently developed protocol to isolate secretory cavities in a functional state could be used in conjunction with systems biology approaches to help characterize their biosynthesis and roles in plants. Copyright © 2011 Elsevier Ltd. All rights reserved.

Cavitation in confined water: ultra-fast bubble dynamics

NASA Astrophysics Data System (ADS)

Vincent, Olivier; Marmottant, Philippe

2012-02-01

In the hydraulic vessels of trees, water can be found at negative pressure. This metastable state, corresponding to mechanical tension, is achieved by evaporation through a porous medium. It can be relaxed by cavitation, i.e. the sudden nucleation of vapor bubbles. Harmful for the tree due to the subsequent emboli of sap vessels, cavitation is on the contrary used by ferns to eject spores very swiftly. We will focus here on the dynamics of the cavitation bubble, which is of primary importance to explain the previously cited natural phenomena. We use the recently developed method of artificial tress, using transparent hydrogels as the porous medium. Our experiments, on water confined in micrometric hydrogel cavities, show an extremely fast dynamics: bubbles are nucleated at the microsecond timescale. For cavities larger than 100 microns, the bubble ``rings'' with damped oscillations at MHz frequencies, whereas for smaller cavities the oscillations become overdamped. This rich dynamics can be accounted for by a model we developed, leading to a modified Rayleigh-Plesset equation. Interestingly, this model predicts the impossibility to nucleate bubbles above a critical confinement that depends on liquid negative pressure and corresponds to approximately 100 nm for 20 MPa tensions.

The laryngeal primordium and epithelial lamina. A new interpretation.

PubMed Central

Sañudo, J R; Domenech-Mateu, J M

1990-01-01

The laryngeal primordium is present in both the laryngotracheal sulcus (LTS) and the primitive pulmonary sac (PPS). Its early period of development may be subdivided into two phases. The first phase (Stage 11) is represented by what is traditionally referred to as the LTS, located directly beneath the PP4 on the ventral wall of the foregut (primary segment), and by the PPS which is situated at its caudal end. The LTS will represent the primordium of the upper or membranous infraglottic cavity region; whereas the PPS, will give rise not only to the bronchial tree, but also to the primordium of the trachea and the lower or cartilaginous region of the infraglottic cavity. The second phase (Stages 13 and 14) is distinguished by the cranial growth of the LTS above the PP4 and therefore by its absorption into the floor of the primitive pharynx in the mesobranchial area (secondary segment), which will develop into the primordium of the vestibule of the larynx. Similarly, we observed that in the development of the laryngeal cavity there are two temporally and spatially separate epithelial structures: the epithelial septum and the epithelial lamina. In this respect we differ from other authors who are of the opinion that there is a single structure (the epithelial lamina). The epithelial septum is a primary structure responsible for the final configuration of the LTS, as it contributes to the development of the lower end of the primary segment of the LTS and also to the creation of the secondary segment. The epithelial lamina is a secondary structure which appears inside the LTS as a result of pressure exerted by the mesenchyme on its lateral walls, without having any effect on the morphogenesis of the LTS. Images Fig. 1 Fig. 2 Fig. 3 Fig. 4 Fig. 5 Fig. 6 Fig. 7 PMID:2081706

KENNEDY SPACE CENTER, FLA. - A female Red-bellied Woodpecker clings to a utility pole where it has made a home on Merritt Island Wildlife Refuge. The most common type of woodpecker in the South, the "Zebraback" nests in the cavities of trees and consumes large quantities of wood-boring beetles, as well as other insect pests. More than 280 species of birds make their homes on the 140,000-acre refuge, which lies within the boundaries of Kennedy Space Center.

NASA Image and Video Library

1995-04-10

KENNEDY SPACE CENTER, FLA. - A female Red-bellied Woodpecker clings to a utility pole where it has made a home on Merritt Island Wildlife Refuge. The most common type of woodpecker in the South, the "Zebraback" nests in the cavities of trees and consumes large quantities of wood-boring beetles, as well as other insect pests. More than 280 species of birds make their homes on the 140,000-acre refuge, which lies within the boundaries of Kennedy Space Center.

Limited acclimation in leaf anatomy to experimental drought in tropical rainforest trees.

PubMed

Binks, Oliver; Meir, Patrick; Rowland, Lucy; da Costa, Antonio Carlos Lola; Vasconcelos, Steel Silva; de Oliveira, Alex Antonio Ribeiro; Ferreira, Leandro; Mencuccini, Maurizio

2016-12-01

Dry periods are predicted to become more frequent and severe in the future in some parts of the tropics, including Amazonia, potentially causing reduced productivity, higher tree mortality and increased emissions of stored carbon. Using a long-term (12 year) through-fall exclusion (TFE) experiment in the tropics, we test the hypothesis that trees produce leaves adapted to cope with higher levels of water stress, by examining the following leaf characteristics: area, thickness, leaf mass per area, vein density, stomatal density, the thickness of palisade mesophyll, spongy mesophyll and both of the epidermal layers, internal cavity volume and the average cell sizes of the palisade and spongy mesophyll. We also test whether differences in leaf anatomy are consistent with observed differential drought-induced mortality responses among taxa, and look for relationships between leaf anatomy, and leaf water relations and gas exchange parameters. Our data show that trees do not produce leaves that are more xeromorphic in response to 12 years of soil moisture deficit. However, the drought treatment did result in increases in the thickness of the adaxial epidermis (TFE: 20.5 ± 1.5 µm, control: 16.7 ± 1.0 µm) and the internal cavity volume (TFE: 2.43 ± 0.50 mm 3 cm -2 , control: 1.77 ± 0.30 mm 3 cm -2 ). No consistent differences were detected between drought-resistant and drought-sensitive taxa, although interactions occurred between drought-sensitivity status and drought treatment for the palisade mesophyll thickness (P = 0.034) and the cavity volume of the leaves (P = 0.025). The limited response to water deficit probably reflects a tight co-ordination between leaf morphology, water relations and photosynthetic properties. This suggests that there is little plasticity in these aspects of plant anatomy in these taxa, and that phenotypic plasticity in leaf traits may not facilitate the acclimation of Amazonian trees to the predicted future reductions in dry season water availability. © The Author 2016. Published by Oxford University Press.

Structure and method for controlling the thermal emissivity of a radiating object

DOEpatents

DeSteese, John G.; Antoniak, Zenen I.; White, Michael; Peters, Timothy J.

2004-03-30

A structure and method for changing or controlling the thermal emissivity of the surface of an object in situ, and thus, changing or controlling the radiative heat transfer between the object and its environment in situ, is disclosed. Changing or controlling the degree of blackbody behavior of the object is accomplished by changing or controlling certain physical characteristics of a cavity structure on the surface of the object. The cavity structure, defining a plurality of cavities, may be formed by selectively removing material(s) from the surface, selectively adding a material(s) to the surface, or adding an engineered article(s) to the surface to form a new radiative surface. The physical characteristics of the cavity structure that are changed or controlled include cavity area aspect ratio, cavity longitudinal axis orientation, and combinations thereof. Controlling the cavity area aspect ratio may be by controlling the size of the cavity surface area, the size of the cavity aperture area, or a combination thereof. The cavity structure may contain a gas, liquid, or solid that further enhances radiative heat transfer control and/or improves other properties of the object while in service.

Pre- and post-experimental manipulation assessments confirm the increase in number of birds due to the addition of nest boxes

PubMed Central

Cuatianquiz Lima, Cecilia

2016-01-01

Secondary cavity nesting (SCN) birds breed in holes that they do not excavate themselves. This is possible where there are large trees whose size and age permit the digging of holes by primary excavators and only rarely happens in forest plantations, where we expected a deficit of both breeding holes and SCN species. We assessed whether the availability of tree cavities influenced the number of SCNs in two temperate forest types, and evaluated the change in number of SCNs after adding nest boxes. First, we counted all cavities within each of our 25-m radius sampling points in mature and young forest plots during 2009. We then added nest boxes at standardised locations during 2010 and 2011 and conducted fortnightly bird counts (January–October 2009–2011). In 2011 we added two extra plots of each forest type, where we also conducted bird counts. Prior to adding nest boxes, counts revealed more SCNs in mature than in young forest. Following the addition of nest boxes, the number of SCNs increased significantly in the points with nest boxes in both types of forest. Counts in 2011 confirmed the increase in number of birds due to the addition of nest boxes. Given the likely benefits associated with a richer bird community we propose that, as is routinely done in some countries, forest management programs preserve old tree stumps and add nest boxes to forest plantations in order to increase bird numbers and bird community diversity. PMID:26998410

Mercury exposure and effects on cavity-nesting birds from the Carson River, Nevada

USGS Publications Warehouse

Custer, Christine M.; Custer, T.W.; Hill, E.F.

2007-01-01

Mercury (Hg) concentrations were 15-40 times higher in the eggs and livers of tree swallows (Tachycineta bicolor) and house wrens (Troglodytes aedon) that nested along the Carson River at and below Dayton, Nevada than in the same species above the mining-impacted areas. Hg contamination was mainly the result of processing mills in the 1800s that used Hg to separate gold and silver from ore. The exposure pattern of tree swallows and house wrens along the Carson River was consistent with their trophic status (i.e., lower levels in liver tissue of aquatic insectivores than in piscivorous birds nesting nearby). Even though they are aquatic insectivores, tree swallows and house wrens were exposed to the same amount of Hg as piscivores in the Florida Everglades; this indicated the extreme level of Hg contamination in the Carson River. Only 70-74% of the eggs hatched. This was less than the nationwide average for these two species that generally hatch ???85% of eggs. Although the sample size was small, Hg might be impacting reproductive end points in cavity-nesting birds from the Carson River. Other trace elements were present at background concentrations. ?? 2006 Springer Science+Business Media, Inc.

Spitzer Reveals Stellar Family Tree

NASA Image and Video Library

2008-08-22

Generations of stars can be seen in this new infrared portrait from NASA Spitzer Space Telescope. In this wispy star-forming region, called W5, the oldest stars can be seen as blue dots in the centers of the two hollow cavities.

Housing Shortages in Urban Regions: Aggressive Interactions at Tree Hollows in Forest Remnants

PubMed Central

Davis, Adrian; Major, Richard E.; Taylor, Charlotte E.

2013-01-01

Urbanisation typically results in a reduction of hollow-bearing trees and an increase in the density of particularly species, potentially resulting in an increased level of competition as cavity-nesting species compete for a limited resource. To improve understanding of hollow usage between urban cavity-nesting species in Australia, particularly parrots, we investigated how the hollow-using assemblage, visitation rate, diversity and number of interactions varied between hollows within urban remnant forest and continuous forest. Motion-activated video cameras were installed, via roped access to the canopy, and hollow usage was monitored at 61 hollows over a two-year period. Tree hollows within urban remnants had a significantly different assemblage of visitors to those in continuous forest as well as a higher rate of visitation than hollows within continuous forest, with the rainbow lorikeet making significantly more visitations than any other taxa. Hollows within urban remnants were characterised by significantly higher usage rates and significantly more aggressive interactions than hollows within continuous forest, with parrots responsible for almost all interactions. Within urban remnants, high rates of hollow visitation and both interspecific and intraspecific interactions observed at tree hollows suggest the number of available optimal hollows may be limiting. Understanding the usage of urban remnant hollows by wildlife, as well as the role of parrots as a potential flagship for the conservation of tree-hollows, is vital to prevent a decrease in the diversity of urban fauna, particularly as other less competitive species risk being outcompeted by abundant native species. PMID:23555657

Electrical Imaging of Roots and Trunks

NASA Astrophysics Data System (ADS)

Al Hagrey, S.; Werban, U.; Meissner, R.; Ismaeil, A.; Rabbel, W.

2005-05-01

We applied geoelectric and GPR techniques to analyze problems of botanical structures and even processes, e.g., mapping root zones, internal structure of trunks, and water uptake by roots. The dielectric nature of root zones and trunks is generally a consequence of relatively high moisture content. The electric method, applied to root zones, can discriminate between old, thick, isolated roots (high resistivity) and the network of young, active, and hydraulically conductive zones (low resistivity). Both types of roots show low radar velocity and a strong attenuation caused by the dominant effect of moisture (high dielectric constant) on the electromagnetic wave propagation. Single root branches could be observed in radargrams by their reflection and diffraction parabolas. We have perfected the inversion method for perfect and imperfect cylindrical objects, such as trunks, and developed a new multielectrodes (needle or gel) ring array for fast applications on living trees and discs. Using synthetic models we tested the technique successfully and analyzed it as a function of total electrode number and configuration. Measurements at a trunk show a well established inverse relationship between the imaged resistivity and the moisture content determined from cores. The central resistivity maximum of healthy trees strongly decreases toward the rim. This agrees with the moisture decrease to the outside where active sap flow processes take place. Branching, growth anomalies (new or old shoots) and meteorological effects (sunshine and wind direction) lead to deviations of the concentric electric structure. The strongest anomalies are related to infections causing wet, rotting spots or cavities. The heartwood resistivity is highest in olive and oak trunks, intermediate in young fruit trees and lowest in cork oak trunks that are considered to be anomalously wet. Compared to acoustic tomography our electric technique shows a better resolution in imaging internal ring structures where moisture is the most dominating factor. We conclude that our imaging resistivity technique is applicable for investigating or controlling the botanical and physical conditions of endangered trees (health inspection) and capable to monitor dynamic processes of sap flow if adequate tracers are used.

The two-dimensional hybrid surface plasma micro-cavity

NASA Astrophysics Data System (ADS)

Kai, Tong; Mei-yu, Wang; Fu-cheng, Wang; Jia, Guo

2018-07-01

A hybrid surface plasma micro-cavity structure with a defect cavity is formed based on the two-dimensional surface plasmon resonance photonic crystal waveguide structure. A cell defect is introduced in the centre of the photonic crystal layer to build the hybrid surface plasma micro-cavity structure. This work is numerical based on the finite-difference time-domain method. The photon energy is confined to the micro-cavity and the photon energy is strongest at the interface between the insulating layer and the metal layer. The micro-cavity structure has a very small mode volume of sub-wavelength scale in the 1550 nm communication band. The value of Q/V is up to 7132.08 λ/n-3.

Snag habitat management: Proceedings of the symposium

Treesearch

Jerry W. Davis; Gregory A. Goodwin; Richard A. Ockenfels

1983-01-01

These proceedings include 41 papers focusing attention on the need to integrate management of snags - dead or deteriorating trees critical to needs of cavity-dependent wildlife - with other resource uses and demands. Sessions concentrated on management, habitat and species requirements, and monitoring and modeling.

Excimer laser with fluoropolymer lining

DOEpatents

Sze, Robert C.

1982-01-01

A cavity formed of Teflon to provide extended static fill lifetimes for gases containing halogens. A double cavity configuration provides structural integrity to the inner Teflon cavity by maintaining an identical multi-atmospheric pressure within the outer structural cavity to minimize tension on the Teflon inner cavity. Use of a quantity of the lasing gas in the outer cavity or a constituent of that gas minimizes contamination of the lasing gas.

Otolith research for Puget Sound

USGS Publications Warehouse

Larsen, K.; Reisenbichler, R.

2007-01-01

Otoliths are hard structures located in the brain cavity of fish. These structures are formed by a buildup of calcium carbonate within a gelatinous matrix that produces light and dark bands similar to the growth rings in trees. The width of the bands corresponds to environmental factors such as temperature and food availability. As juvenile salmon encounter different environments in their migration to sea, they produce growth increments of varying widths and visible 'checks' corresponding to times of stress or change. The resulting pattern of band variations and check marks leave a record of fish growth and residence time in each habitat type. This information helps Puget Sound restoration by determining the importance of different habitats for the optimal health and management of different salmon populations. The USGS Western Fisheries Research Center (WFRC) provides otolith research findings directly to resource managers who put this information to work.

Artificial cavities enhance breeding bird densities in managed cottonwood forests

USGS Publications Warehouse

Twedt, D.J.; Henne-Kerr, J.L.

2001-01-01

The paucity of natural cavities within short-rotation hardwood agroforests restricts occupancy by cavity-nesting birds. However, providing 1.6 artificial nesting cavities (nest boxes)/ha within 3- to 10-year-old managed cottonwood forests in the Mississippi Alluvial Valley increased territory density of cavity-nesting birds. Differences in territory densities between forests with and without nest boxes increased as stands aged. Seven bird species initiated 38 nests in 173 boxes during 1997 and 39 nests in 172 boxes during 1998. Prothonotary warblers (Protonotaria citrea) and eastern bluebirds (Sialia sialis) accounted for 67% of nests; nearly all warbler nests were in 1.8-L, plastic-coated cardboard (paper) boxes, whereas bluebird nests were divided between paper boxes and 3.5-L wooden boxes. Larger-volume (16.5-L) wooden nest boxes were used by eastern screech owls (Otus asio) and great crested flycatchers (Myiarchus crinitus), but this box type often was usurped by honey bees (Apis mellifera). To enhance territory densities of cavity-nesting birds in cottonwood agroforests, we recommend placement of plastic-coated paper nest boxes, at a density of 0.5/ha, after trees are >4 years old but at least 2 years before anticipated timber harvest.

Study on model design and dynamic similitude relations of vibro-acoustic experiment for elastic cavity

NASA Astrophysics Data System (ADS)

Shi, Ao; Lu, Bo; Yang, Dangguo; Wang, Xiansheng; Wu, Junqiang; Zhou, Fangqi

2018-05-01

Coupling between aero-acoustic noise and structural vibration under high-speed open cavity flow-induced oscillation may bring about severe random vibration of the structure, and even cause structure to fatigue destruction, which threatens the flight safety. Carrying out the research on vibro-acoustic experiments of scaled down model is an effective means to clarify the effects of high-intensity noise of cavity on structural vibration. Therefore, in allusion to the vibro-acoustic experiments of cavity in wind tunnel, taking typical elastic cavity as the research object, dimensional analysis and finite element method were adopted to establish the similitude relations of structural inherent characteristics and dynamics for distorted model, and verifying the proposed similitude relations by means of experiments and numerical simulation. Research shows that, according to the analysis of scale-down model, the established similitude relations can accurately simulate the structural dynamic characteristics of actual model, which provides theoretic guidance for structural design and vibro-acoustic experiments of scaled down elastic cavity model.

Promoting habitat complexity in second-growth forests.

Treesearch

Annette Bristol; Andrew B. Carey

2002-01-01

The following management tools can help meet multiple values—environmental, economic, and aesthetic—when used collectively and according to a well-devised plan.Cavity Tree CreationCoarse Woody Debris AugmentationUnderplantingConservation of Biological legaciesVariable-Density ThinningExtended...

Comparison of various decentralised structural and cavity feedback control strategies for transmitted noise reduction through a double panel structure

NASA Astrophysics Data System (ADS)

Ho, Jen-Hsuan; Berkhoff, Arthur

2014-03-01

This paper compares various decentralised control strategies, including structural and acoustic actuator-sensor configuration designs, to reduce noise transmission through a double panel structure. The comparison is based on identical control stability indexes. The double panel structure consists of two panels with air in between and offers the advantages of low sound transmission at high frequencies, low heat transmission, and low weight. The double panel structure is widely used, such as in the aerospace and automotive industries. Nevertheless, the resonance of the cavity and the poor sound transmission loss at low frequencies limit the double panel's noise control performance. Applying active structural acoustic control to the panels or active noise control to the cavity has been discussed in many papers. In this paper, the resonances of the panels and the cavity are considered simultaneously to further reduce the transmitted noise through an existing double panel structure. A structural-acoustic coupled model is developed to investigate and compare various structural control and cavity control methods. Numerical analysis and real-time control results show that structural control should be applied to both panels. Three types of cavity control sources are presented and compared. The results indicate that the largest noise reduction is obtained with cavity control by loudspeakers modified to operate as incident pressure sources.

Fluid-structure interactions in compressible cavity flows

DOE PAGES

Wagner, Justin L.; Casper, Katya Marie; Beresh, Steven J.; ...

2015-06-08

Experiments were performed to understand the complex fluid-structure interactions that occur during aircraft internal store carriage. A cylindrical store was installed in a rectangular cavity having a length-to-depth ratio of 3.33 and a length-to-width ratio of 1. The Mach number ranged from 0.6 to 2.5 and the incoming boundary layer was turbulent. Fast-response pressure measurements provided aeroacoustic loading in the cavity, while triaxial accelerometers provided simultaneous store response. Despite occupying only 6% of the cavity volume, the store significantly altered the cavity acoustics. The store responded to the cavity flow at its natural structural frequencies, and it exhibited a directionallymore » dependent response to cavity resonance. Specifically, cavity tones excited the store in the streamwise and wall-normal directions consistently, whereas a spanwise response was observed only occasionally. Also, the streamwise and wall-normal responses were attributed to the longitudinal pressure waves and shear layer vortices known to occur during cavity resonance. Although the spanwise response to cavity tones was limited, broadband pressure fluctuations resulted in significant spanwise accelerations at store natural frequencies. As a result, the largest vibrations occurred when a cavity tone matched a structural natural frequency, although energy was transferred more efficiently to natural frequencies having predominantly streamwise and wall-normal motions.« less

Monitoring interactions between red-cockaded woodpeckers and southern flying squirrels.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Risch, Thomas S; Loeb, Susan C

2004-12-31

Risch, Thomas S., and Susan C. Loeb. 2004. Monitoring interactions between red-cockaded woodpeckers and southern flying squirrels. In: Red-cockaded woodpecker; Road to Recovery. Proceedings of the 4th Red-cockaded woodpecker Symposium. Ralph Costa and Susan J. Daniels, eds. Savannah, Georgia. January, 2003. Chapter 8. Cavities, Cavity Trees, and Cavity Communities. Pp 504-505. Abstract: Although several studies have suggested that southern flying squirrels (Glaucomys volans) may have a significant negative impact on red-cockades woodpeckers (Picoides borealsi) (Loeb and Hooper 1997, Laves and Loeb 1999), the nature of the interactions between the species remains unclear. Particularly lacking are data that address if southernmore » flying squirrels directly usurp red-cockaded woodpecker s from cavities, or simply occupy cavities previously abandoned by red-cockaded woodpeckers. Ridley et al. (1997) observed the displacement of a red-cockaded woodpecker by a southern flying squirrel that was released after being captured. Observations of nocturnal displacements of red-cockaded woodpeckers by flying squirrels, however, are lacking. Due to the difficulty of observing interspecific interactions, determining the mechanisims by which flying squirrels impact red-cockaded woodpeckers is problematic.« less

Experimental evidence of a symbiosis between red-cockaded woodpeckers and fungi.

PubMed

Jusino, Michelle A; Lindner, Daniel L; Banik, Mark T; Rose, Kevin R; Walters, Jeffrey R

2016-03-30

Primary cavity excavators, such as woodpeckers, are ecosystem engineers in many systems. Associations between cavity excavators and fungi have long been hypothesized to facilitate cavity excavation, but these relationships have not been experimentally verified. Fungi may help excavators by softening wood, while excavators may facilitate fungal dispersal. Here we demonstrate that excavators facilitate fungal dispersal and thus we report the first experimental evidence of a symbiosis between fungi and a cavity excavator, the red-cockaded woodpecker (RCW,Picoides borealis). Swab samples of birds showed that RCWs carry fungal communities similar to those found in their completed excavations. A 26-month field experiment using human-made aseptically drilled excavations in live trees, half of which were inaccessible to RCWs, demonstrated that RCWs directly alter fungal colonization and community composition. Experimental excavations that were accessible to RCWs contained fungal communities similar to natural RCW excavations, whereas inaccessible experimental excavations contained significantly different fungal communities. Our work demonstrates a complex symbiosis between cavity excavators and communities of fungi, with implications for forest ecology, wildlife management, and conservation. © 2016 The Author(s).

Tunable cavity resonator including a plurality of MEMS beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peroulis, Dimitrios; Fruehling, Adam; Small, Joshua Azariah

A tunable cavity resonator includes a substrate, a cap structure, and a tuning assembly. The cap structure extends from the substrate, and at least one of the substrate and the cap structure defines a resonator cavity. The tuning assembly is positioned at least partially within the resonator cavity. The tuning assembly includes a plurality of fixed-fixed MEMS beams configured for controllable movement relative to the substrate between an activated position and a deactivated position in order to tune a resonant frequency of the tunable cavity resonator.

Quiet planting in the locked constraints satisfaction problems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zdeborova, Lenka; Krzakala, Florent

2009-01-01

We study the planted ensemble of locked constraint satisfaction problems. We describe the connection between the random and planted ensembles. The use of the cavity method is combined with arguments from reconstruction on trees and first and second moment considerations; in particular the connection with the reconstruction on trees appears to be crucial. Our main result is the location of the hard region in the planted ensemble, thus providing hard satisfiable benchmarks. In a part of that hard region instances have with high probability a single satisfying assignment.

Dens of northern flying squirrels in the Pacific Northwest.

Treesearch

A.B. Carey; T.M. Wilson; C.C. Maguire; B.L. Biswell

1997-01-01

Silvicultural prescriptions to enhance northern flying squirrel (Glaucoinys sabrinus) habitat have been suggested as an aid for recovery of the threatened northern spotted owl (Strix occidentalis caurina). Flying squirrels are hypothesized to be limited by den sites (cavities in trees) and by food (truffles). However, no...

Optical bistability and second-harmonic generation in thin film coupled cavity photonic crystal structures

NASA Astrophysics Data System (ADS)

Diao, Liyong

This thesis deals with design, fabrication and modeling of bistable and multi-stable switching dynamics and second-harmonic generation in two groups of thin film coupled cavity photonic crystal structures. The first component studies optical bistability and multistability in such structures. Optical bistability and multistability are modelled by a nonlinear transfer matrix method. The second component is focused on the modelling and experimental measurement of second-harmonic generation in such structures. It is found that coupled cavity structures can reduce the threshold and index change for bistable operation, but single cavity structures can do the same. However, there is a clear advantage in using coupled cavity structures for multistability in that the threshold for multistability can be reduced. Second-harmonic generation is enhanced by field localization due to the resonant effect at the fundamental wavelength in single and coupled cavity structures by simulated and measured results. The work in this thesis makes three significant contributions. First, in the successful fabrication of thin film coupled cavity structures, the simulated linear transmissions of such structures match those of the fabricated structures almost exactly. Second, the newly defined figure of merit at the maximum transmission point on the bistable curve can be used to compare the material damage tolerance to any other Kerr effect nonlinear gate. Third, the simulated second-harmonic generation agrees excellently with experimental results. More generally optical thin film fabrication has commercial applications in many industry sections, such as electronics, opto-electronics, optical coating, solar cell and MEMS.

RosettaHoles: rapid assessment of protein core packing for structure prediction, refinement, design, and validation.

PubMed

Sheffler, Will; Baker, David

2009-01-01

We present a novel method called RosettaHoles for visual and quantitative assessment of underpacking in the protein core. RosettaHoles generates a set of spherical cavity balls that fill the empty volume between atoms in the protein interior. For visualization, the cavity balls are aggregated into contiguous overlapping clusters and small cavities are discarded, leaving an uncluttered representation of the unfilled regions of space in a structure. For quantitative analysis, the cavity ball data are used to estimate the probability of observing a given cavity in a high-resolution crystal structure. RosettaHoles provides excellent discrimination between real and computationally generated structures, is predictive of incorrect regions in models, identifies problematic structures in the Protein Data Bank, and promises to be a useful validation tool for newly solved experimental structures.

RosettaHoles: Rapid assessment of protein core packing for structure prediction, refinement, design, and validation

PubMed Central

Sheffler, Will; Baker, David

2009-01-01

We present a novel method called RosettaHoles for visual and quantitative assessment of underpacking in the protein core. RosettaHoles generates a set of spherical cavity balls that fill the empty volume between atoms in the protein interior. For visualization, the cavity balls are aggregated into contiguous overlapping clusters and small cavities are discarded, leaving an uncluttered representation of the unfilled regions of space in a structure. For quantitative analysis, the cavity ball data are used to estimate the probability of observing a given cavity in a high-resolution crystal structure. RosettaHoles provides excellent discrimination between real and computationally generated structures, is predictive of incorrect regions in models, identifies problematic structures in the Protein Data Bank, and promises to be a useful validation tool for newly solved experimental structures. PMID:19177366

Astigmatism inducing the degenerate effect in nearly hemispherical cavities: generation of three-dimensional structured light

NASA Astrophysics Data System (ADS)

Tung, J. C.; Hsieh, Y. H.; Liang, H. C.; Su, K. W.; Huang, K. F.; Chen, Y. F.

2017-04-01

We originally perform an analytical form to explore the influence of the astigmatism on the degenerate effect in nearly hemispherical cavities. The frequency spectrum near hemispherical cavities clearly reveals that not only the difference of cavity lengths between each degeneracies but also frequency gaps have significant difference from non-hemispherical cavities. We further thoroughly demonstrate the laser experiment under the condition of nearly hemispherical cavities to confirm the theoretical exploration that the transverse topology of three-dimensional (3D) structured light in the degenerate cavities is well localized on the Lissajous curves.

Resonant tunneling effects on cavity-embedded metal film caused by surface-plasmon excitation.

PubMed

Lan, Yung-Chiang; Chang, Che-Jung; Lee, Peng-Hsiao

2009-01-01

We investigate cavity-modulated resonant tunneling through a silver film with periodic grooves on both surfaces. A strip cavity embedded in the film affects tunneling frequencies via a coupling mode and waveguide mode. In the coupling mode, both the resonant tunneling through the gap between the groove and the cavity and the cavity itself form an entire resonant structure. In the waveguide mode, however, the cavity functions as a surface-plasmon waveguide. Hence, tunneling frequencies are close to resonant absorption frequencies of the groove structure and are irrelevant to cavity properties.

Sequentially Observed Periodic Surveys of Management Compartments to Monitor Red-cockaded Woodpecker Populations

Treesearch

Robert G. Hooper; H. David Muse

1989-01-01

Management of the red-cockaded woodpeckcer (Picoides borealis) requires knowledge of size and trend of individual poulations. Periodic entry into management compartments for thinning and regeneration of stands provides considerable information on individual cavity trees and colonies. The statistical rationale and formulas for using this information...

Forest wildlife habitat statistics for Vermont--1983

Treesearch

Robert T. Brooks; Thomas S. Frieswyk; Anne M. Malley; Anne M. Malley

1987-01-01

A statistical report on the first forest wildlife habitat survey of Vermont (1983). Findings are displayed in 67 tables covering forest area, landscape patterns, mast potential, standing dead and cavity trees, and lesser woody stemmed vegetation. Data are presented at county and/or unit and state levels of resolution.

Chapter 10. Dynamics of subalpine forests

Treesearch

Dennis H. Knight

1994-01-01

The boreal owl's fairly specific habitat requirements restrict its range in the conterminous U.S. to subalpine forests (see Chapter 9). These forests provide tree cavities, uncrusted snow that facilitates preying on small mammals, and cool microclimates essential for summer roosting. Such forests also provide habitat for the owl's prey which consists...

Modeling and experimental verification of laser self-mixing interference phenomenon with the structure of two-external-cavity feedback

NASA Astrophysics Data System (ADS)

Chen, Peng; Liu, Yuwei; Gao, Bingkun; Jiang, Chunlei

2018-03-01

A semiconductor laser employed with two-external-cavity feedback structure for laser self-mixing interference (SMI) phenomenon is investigated and analyzed. The SMI model with two directions based on F-P cavity is deduced, and numerical simulation and experimental verification were conducted. Experimental results show that the SMI with the structure of two-external-cavity feedback under weak light feedback is similar to the sum of two SMIs.

A Covering Type Extrusion Die with Twin Cavities for Semi-Hollow Al-Profiles

NASA Astrophysics Data System (ADS)

Deng, Rurong; Huang, Xuemei

2018-03-01

A new structure named covering type with twin cavities in a die for the semi-hollow aluminum profiles was present. The determination of structure parameters was introduced in detail. Mainly including the selection of the machine, the arrangement of portholes, the structure design of chamber and the selection of bearing. The method of checking the die strength was introduced. According to the extrusion results, the structure of the traditional solid die, the porthole die with single cavity and the covering type structure with twin cavities were compared. The characteristics of the latter structure were simple and easy to process. The practical application shows that the new die structure can enhance the die life, improve the production efficiency and reduce the cost. The high precision and the surface brightness of the profiles were obtained. The structure is worth promoting. The aim is to provide reliable data and reference for the further research and development of this technology on the extrusion die with multi-cavities in a die.

Fast generations of tree-type three-dimensional entanglement via Lewis-Riesenfeld invariants and transitionless quantum driving

PubMed Central

Wu, Jin-Lei; Ji, Xin; Zhang, Shou

2016-01-01

Recently, a novel three-dimensional entangled state called tree-type entanglement, which is likely to have applications for improving quantum communication security, was prepared via adiabatic passage by Song et al. Here we propose two schemes for fast generating tree-type three-dimensional entanglement among three spatially separated atoms via shortcuts to adiabatic passage. With the help of quantum Zeno dynamics, two kinds of different but equivalent methods, Lewis-Riesenfeld invariants and transitionless quantum driving, are applied to construct shortcuts to adiabatic passage. The comparisons between the two methods are discussed. The strict numerical simulations show that the tree-type three-dimensional entangled states can be fast prepared with quite high fidelities and the two schemes are both robust against the variations in the parameters, atomic spontaneous emissions and the cavity-fiber photon leakages. PMID:27667583

Habitat Selection and Reproductive Success of Lewis's Woodpecker (Melanerpes lewis) at Its Northern Limit

PubMed Central

Zhu, Xiang; Srivastava, Diane S.; Martin, Kathy

2012-01-01

Lewis's Woodpecker (Melanerpes lewis) has experienced population declines in both Canada and the United States and in 2010 was assigned a national listing of threatened in Canada. We conducted a two-year study (2004–2005) of this species at its northern range limit, the South Okanagan Valley in British Columbia, Canada. Our main objective was to determine whether the habitat features that influenced nest-site selection also predicted nest success, or whether other factors (e.g. cavity dimensions, clutch initiation date or time of season) were more important. Nest tree decay class, density of suitable cavities and total basal area of large trees were the best predictors of nest-site selection, but these factors were unrelated to nesting success. Estimates of demographic parameters (mean ± SE) included daily nest survival rate (0.988±0.003, years combined), nest success (0.52±0.08), clutch size (5.00±0.14 eggs), female fledglings per successful nest (1.31±0.11), and annual productivity (0.68±0.12 female fledglings per nest per year). Although higher nest survival was associated with both early and late initiated clutches, early-initiated clutches allowed birds to gain the highest annual productivity as early clutches were larger. Nests in deep cavities with small entrances experienced lower predation risk especially during the peak period of nest predation. We concluded that nest-site selection can be predicted by a number of easily measured habitat variables, whereas nest success depended on complicated ecological interactions among nest predators, breeding behaviors, and cavity features. Thus, habitat-based conservation strategies should also consider ecological factors that may not be well predicted by habitat. PMID:23028525

Forward Modeling of a Coronal Cavity

NASA Technical Reports Server (NTRS)

Kucera, T. A.; Gibson, S. E.; Schmit, D. J.

2011-01-01

We apply a forward model of emission from a coronal cavity in an effort to determine the temperature and density distribution in the cavity. Coronal cavities are long, low-density structures located over filament neutral lines and are often seen as dark elliptical features at the solar limb in white light, EUV and X-rays. When these structures erupt they form the cavity portions of CMEs The model consists of a coronal streamer model with a tunnel-like cavity with elliptical cross-section and a Gaussian variation of height along the tunnel length. Temperature and density can be varied as a function of altitude both in the cavity and streamer. We apply this model to a cavity observed in Aug. 2007 by a wide array of instruments including Hinode/EIS, STEREO/EUVI and SOHO/EIT. Studies such as these will ultimately help us understand the the original structures which erupt to become CMEs and ICMES, one of the prime Solar Orbiter objectives.

Morphology of a Hot Coronal Cavity Core as Observed by Hinode/XRT

NASA Technical Reports Server (NTRS)

Reeves, K. K.; Gibson, S. E.; Kucera, T. A.; Hudson, H. S.

2010-01-01

We follow a coronal cavity that was observed by Hinode/XRT during the summer of 2008. This cavity has a persistent area of relatively bright X-ray emission in its center. We use multifilter data from XRT to study the thermal emission from this cavity, and find that the bright center is hotter than the surrounding cavity plasma with temperatures of about 1.6 MK. We follow the morphology of this hot feature as the cavity structure rotates over the limb during the several days between July 19 - 23 2008. We find that the hot structure at first looks fairly circular, then appears to expand and elongate, and then shrinks again to a compact circular shape. We interpret this apparent change in shape as being due to the morphology of the filament channel associated with the cavity, and the change in viewing angle as the structure rotates over the limb of the Sun.

Mechanical properties of niobium radio-frequency cavities

DOE PAGES

Ciovati, Gianluigi; Dhakal, Pashupati; Matalevich, Joseph R.; ...

2015-07-02

Radio-frequency cavities made of bulk niobium are one of the components used in modern particle accelerators. The mechanical stability is an important aspect of cavity design, which typically relies on finite-element analysis simulations using material properties from tensile tests on sample. This contribution presents the results of strain and resonant frequency measurements as a function of a uniform pressure up to 722 kPa, applied to single-cell niobium cavities with different crystallographic structure, purity and treatments. In addition, burst tests of high-purity multi-cell cavities with different crystallographic structure have been conducted up to the tensile strength of the material. Finite-element analysismore » of the single-cell cavity geometry is in good agreement with the observed behavior in the elastic regime assuming a Young's modulus value of 88.5 GPa and a Poisson's ratio of 0.4, regardless of crystallographic structure, purity or treatment. However, the measured yield strength and tensile strength depend on crystallographic structure, material purity and treatment. In particular, the results from this study show that the mechanical properties of niobium cavities with large crystals are comparable to those of cavities made of fine-grain niobium.« less

Coupled-cavity drift-tube linac

DOEpatents

Billen, James H.

1996-01-01

A coupled-cavity drift-tube linac (CCDTL) combines features of the Alvarez drift-tube linac (DTL) and the .pi.-mode coupled-cavity linac (CCL). In one embodiment, each accelerating cavity is a two-cell, 0-mode DTL. The center-to-center distance between accelerating gaps is .beta..lambda., where .lambda. is the free-space wavelength of the resonant mode. Adjacent accelerating cavities have oppositely directed electric fields, alternating in phase by 180 degrees. The chain of cavities operates in a .pi./2 structure mode so the coupling cavities are nominally unexcited. The CCDTL configuration provides an rf structure with high shunt impedance for intermediate velocity charged particles, i.e., particles with energies in the 20-200 MeV range.

Coupled-cavity drift-tube linac

DOEpatents

Billen, J.H.

1996-11-26

A coupled-cavity drift-tube linac (CCDTL) combines features of the Alvarez drift-tube linac (DTL) and the {pi}-mode coupled-cavity linac (CCL). In one embodiment, each accelerating cavity is a two-cell, 0-mode DTL. The center-to-center distance between accelerating gaps is {beta}{lambda}, where {lambda} is the free-space wavelength of the resonant mode. Adjacent accelerating cavities have oppositely directed electric fields, alternating in phase by 180 degrees. The chain of cavities operates in a {pi}/2 structure mode so the coupling cavities are nominally unexcited. The CCDTL configuration provides an rf structure with high shunt impedance for intermediate velocity charged particles, i.e., particles with energies in the 20-200 MeV range. 5 figs.

Fabrication of SOI structures with buried cavities using Si wafer direct bonding and electrochemical etch-stop

NASA Astrophysics Data System (ADS)

Chung, Gwiy-Sang

2003-10-01

This paper describes the fabrication of SOI structures with buried cavities using SDB and electrochemical etch-stop. These methods are suitable for thick membrane fabrication with accurate thickness, uniformity, and flatness. After a feed-through hole for supplied voltage and buried cavities was formed on a handle Si wafer with p-type, the handle wafer was bonded to an active Si wafer consisting of a p-type substrate with an n-type epitaxial layer corresponding to membrane thickness. The bonded pair was then thinned until electrochemical etch-stop occurred at the pn junction during electrochemical etchback. By using the SDB SOI structure with buried cavities, active membranes, which have a free standing structure with a dimension of 900×900 μm2, were fabricated. It is confirmed that the fabrication process of the SDB SOI structure with buried cavities is a powerful and versatile technology for new MEMS applications.

Constant field gradient planar coupled cavity structure

DOEpatents

Kang, Y.W.; Kustom, R.L.

1999-07-27

A cavity structure is disclosed having at least two opposing planar housing members spaced apart to accommodate the passage of a particle beam through the structure between the members. Each of the housing members have a plurality of serially aligned hollows defined therein, and also passages, formed in the members, which interconnect serially adjacent hollows to provide communication between the hollows. The opposing planar housing members are spaced and aligned such that the hollows in one member cooperate with corresponding hollows in the other member to form a plurality of resonant cavities aligned along the particle beam within the cavity structure. To facilitate the obtaining of a constant field gradient within the cavity structure, the passages are configured so as to be incrementally narrower in the direction of travel of the particle beam. In addition, the spacing distance between the opposing housing members is configured to be incrementally smaller in the direction of travel of the beam. 16 figs.

Constant field gradient planar coupled cavity structure

DOEpatents

Kang, Yoon W.; Kustom, Robert L.

1999-01-01

A cavity structure having at least two opposing planar housing members spaced apart to accommodate the passage of a particle beam through the structure between the members. Each of the housing members have a plurality of serially aligned hollows defined therein, and also passages, formed in the members, which interconnect serially adjacent hollows to provide communication between the hollows. The opposing planar housing members are spaced and aligned such that the hollows in one member cooperate with corresponding hollows in the other member to form a plurality of resonant cavities aligned along the particle beam within the cavity structure. To facilitate the obtaining of a constant field gradient within the cavity structure, the passages are configured so as to be incrementally narrower in the direction of travel of the particle beam. In addition, the spacing distance between the opposing housing members is configured to be incrementally smaller in the direction of travel of the beam.

A comparative study of buoyancy duration in Carya aquatica, Carya illinoinensis, and Carya x lecontei seeds

USDA-ARS?s Scientific Manuscript database

A characteristic of Carya species is that their seeds are buoyant. The different physical properties of Carya seeds, such as oil composition and air-filled cavities, may contribute to this buoyancy. Carya aquatica (water hickory) and Carya illinoinensis (pecan) trees are found along streams and riv...

Forest habitat loss, fragmentation, and red-cockaded woodpecker populations

Treesearch

Richard N. Conner; D. Craig Rudolph

1991-01-01

Loss of mature forest habitat was measured around Red-cockaded Woodpecker (Picoides borealis) cavity tree clusters (colonies) in three National Forests in eastern Texas. Forest removal results in a loss of foraging habitat and causes habitat fragmentation of the remaining mature forest. Habitat loss was negatively associated with woodpecker group size in small...

Forest wildlife habitat statistics for Maryland and Delaware--1986

Treesearch

Robert T. Brooks; Dawn M. DiGiovanni; Dawn M. DiGiovanni

1989-01-01

A statistical report on the forest wildlife habitat survey of Maryland and Delaware (1986). Findings are displayed in 11 8 tables covering forest area, landscape pattern, mast potential, standing dead and cavity trees; and understory woody-stemmed vegetation. Data are presented at county and/or unit and state levels of resolution.

AMS radiocarbon investigation of the African baobab: Searching for the oldest tree

NASA Astrophysics Data System (ADS)

Patrut, Adrian; von Reden, Karl F.; Mayne, Diana H.; Lowy, Daniel A.; Patrut, Roxana T.

2013-01-01

The Glencoe baobab, a very large specimen from South Africa, split twice in 2009. Several wood samples were collected from the eastern cavity, from the outer part of the main section and also from the largest broken segment which was connected to this section. These wood samples were processed and investigated by AMS radiocarbon dating. The radiocarbon date of the oldest sample was found to be 1838 ± 21 BP, which corresponds to a calibrated age of 1835 ± 40 years. Thus, the Glencoe baobab becomes the oldest dated baobab and also the oldest angiosperm tree with accurate dating results. The distribution of dating results revealed that the Glencoe baobab is a multi-generation tree, with several standing or collapsed and partially fused stems, showing different ages.

Breeding bird response to juniper woodland expansion

USGS Publications Warehouse

Rosenstock, Steven S.; van Riper, Charles

2001-01-01

In recent times, pinyon (Pinus spp.)-juniper (Juniperus spp.) woodlands have expanded into large portions of the Southwest historically occupied by grassland vegetation. From 1997-1998, we studied responses of breeding birds to one-seed juniper (J. monosperma) woodland expansion at 2 grassland study areas in northern Arizona. We sampled breeding birds in 3 successional stages along a grassland-woodland gradient: un-invaded grassland, grassland undergoing early stages of juniper establishment, and developing woodland. Species composition varied greatly among successional stages and was most different between endpoints of the gradient. Ground-nesting grassland species predominated in uninvaded grassland but declined dramatically as tree density increased. Tree- and cavity-nesting species increased with tree density and were most abundant in developing woodland. Restoration of juniper-invaded grasslands will benefit grassland-obligate birds and other wildlife.

Radio frequency plasma method for uniform surface processing of RF cavities and other three-dimensional structures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Popovic, Svetozar; Upadhyay, Janardan; Vuskovic, Leposava

2017-12-26

A method for efficient plasma etching of surfaces inside three-dimensional structures can include positioning an inner electrode within the chamber cavity; evacuating the chamber cavity; adding a first inert gas to the chamber cavity; regulating the pressure in the chamber; generating a plasma sheath along the inner wall of the chamber cavity; adjusting a positive D.C. bias on the inner electrode to establish an effective plasma sheath voltage; adding a first electronegative gas to the chamber cavity; optionally readjusting the positive D.C. bias on the inner electrode reestablish the effective plasma sheath voltage at the chamber cavity; etching the innermore » wall of the chamber cavity; and polishing the inner wall to a desired surface roughness.« less

A simple working classification proposed for the latrogenic lesions of teeth and associated structures in the oral cavity.

PubMed

Shamim, Thorakkal

2013-09-01

Iatrogenic lesions can affect both hard and soft tissues in the oral cavity, induced by the dentist's activity, manner or therapy. There is no approved simple working classification for the iatrogenic lesions of teeth and associated structures in the oral cavity in the literature. A simple working classification is proposed here for iatrogenic lesions of teeth and associated structures in the oral cavity based on its relation with dental specialities. The dental specialities considered in this classification are conservative dentistry and endodontics, orthodontics, oral and maxillofacial surgery and prosthodontics. This classification will be useful for the dental clinician who is dealing with diseases of oral cavity.

Folding Automaton for Trees

NASA Astrophysics Data System (ADS)

Subashini, N.; Thiagarajan, K.

2018-04-01

In this paper we observed the definition of folding technique in graph theory and we derived the corresponding automaton for trees. Also derived some propositions on symmetrical structure tree, non-symmetrical structure tree, point symmetrical structure tree, edge symmetrical structure tree along with finite number of points. This approach provides to derive one edge after n’ number of foldings.

Practical optimization of Steiner trees via the cavity method

NASA Astrophysics Data System (ADS)

Braunstein, Alfredo; Muntoni, Anna

2016-07-01

The optimization version of the cavity method for single instances, called Max-Sum, has been applied in the past to the minimum Steiner tree problem on graphs and variants. Max-Sum has been shown experimentally to give asymptotically optimal results on certain types of weighted random graphs, and to give good solutions in short computation times for some types of real networks. However, the hypotheses behind the formulation and the cavity method itself limit substantially the class of instances on which the approach gives good results (or even converges). Moreover, in the standard model formulation, the diameter of the tree solution is limited by a predefined bound, that affects both computation time and convergence properties. In this work we describe two main enhancements to the Max-Sum equations to be able to cope with optimization of real-world instances. First, we develop an alternative ‘flat’ model formulation that allows the relevant configuration space to be reduced substantially, making the approach feasible on instances with large solution diameter, in particular when the number of terminal nodes is small. Second, we propose an integration between Max-Sum and three greedy heuristics. This integration allows Max-Sum to be transformed into a highly competitive self-contained algorithm, in which a feasible solution is given at each step of the iterative procedure. Part of this development participated in the 2014 DIMACS Challenge on Steiner problems, and we report the results here. The performance on the challenge of the proposed approach was highly satisfactory: it maintained a small gap to the best bound in most cases, and obtained the best results on several instances in two different categories. We also present several improvements with respect to the version of the algorithm that participated in the competition, including new best solutions for some of the instances of the challenge.

Linear induction accelerator

DOEpatents

Buttram, M.T.; Ginn, J.W.

1988-06-21

A linear induction accelerator includes a plurality of adder cavities arranged in a series and provided in a structure which is evacuated so that a vacuum inductance is provided between each adder cavity and the structure. An energy storage system for the adder cavities includes a pulsed current source and a respective plurality of bipolar converting networks connected thereto. The bipolar high-voltage, high-repetition-rate square pulse train sets and resets the cavities. 4 figs.

Apparatus and method for enhanced chemical processing in high pressure and atmospheric plasmas produced by high frequency electromagnetic waves

DOEpatents

Efthimion, Philip C.; Helfritch, Dennis J.

1989-11-28

An apparatus and method for creating high temperature plasmas for enhanced chemical processing of gaseous fluids, toxic chemicals, and the like, at a wide range of pressures, especially at atmospheric and high pressures includes an electro-magnetic resonator cavity, preferably a reentrant cavity, and a wave guiding structure which connects an electro-magnetic source to the cavity. The cavity includes an intake port and an exhaust port, each having apertures in the conductive walls of the cavity sufficient for the intake of the gaseous fluids and for the discharge of the processed gaseous fluids. The apertures are sufficiently small to prevent the leakage of the electro-magnetic radiation from the cavity. Gaseous fluid flowing from the direction of the electro-magnetic source through the guiding wave structure and into the cavity acts on the plasma to push it away from the guiding wave structure and the electro-magnetic source. The gaseous fluid flow confines the high temperature plasma inside the cavity and allows complete chemical processing of the gaseous fluids at a wide range of pressures.

Response of a store with tunable natural frequencies in compressible cavity flow

DOE PAGES

Wagner, Justin L.; Casper, Katya Marie; Beresh, Steven J.; ...

2015-01-07

Fluid-structure interactions that occur during aircraft internal store carriage were experimentally explored at Mach 0.94 and 1.47 using a generic, aerodynamic store installed in a rectangular cavity having a length-to-depth ratio of 7. Similar to previous studies using a cylindrical store, the aerodynamic store responded to the cavity flow at its natural structural frequencies, and it exhibited a directionally dependent response to cavity resonance. Moreover, cavity tones excited the store in the streamwise and wall-normal directions consistently, whereas the spanwise response was much more limited.

The major birch allergen, Bet v 1, shows affinity for a broad spectrum of physiological ligands.

PubMed

Mogensen, Jesper E; Wimmer, Reinhard; Larsen, Jørgen N; Spangfort, Michael D; Otzen, Daniel E

2002-06-28

Bet v 1 is a 17-kDa protein abundantly present in the pollen of the White birch tree and is the primary cause of birch pollen allergy in humans. Its three-dimensional structure is remarkable in that a solvent-accessible cavity traverses the core of the molecule. The biological function of Bet v 1 is unknown, although it is homologous to a family of pathogenesis-related proteins in plants. In this study we first show that Bet v 1 in the native state is able to bind the fluorescent probe 8-anilino-1-naphthalenesulfonic acid (ANS). ANS binds to Bet v 1 with 1:1 stoichiometry, and NMR data indicate that binding takes place in the cavity. Using an ANS displacement assay, we then identify a range of physiologically relevant ligands, including fatty acids, flavonoids, and cytokinins, which generally bind with low micromolar affinity. The ability of these ligands to displace ANS suggests that they also bind in the cavity, although the exact binding sites seem to vary among different ligands. The cytokinins, for example, seem to bind at a separate site close to ANS, because they increase the fluorescence of the ANS. Bet v 1 complex. Also, the fluorescent sterol dehydroergosterol binds to Bet v 1 as demonstrated by direct titrations. This study provides the first qualitative and quantitative data on the ligand binding properties of this important pollen allergen. Our findings indicate that ligand binding is important for the biological function of Bet v 1.

Linear induction accelerator and pulse forming networks therefor

DOEpatents

Buttram, Malcolm T.; Ginn, Jerry W.

1989-01-01

A linear induction accelerator includes a plurality of adder cavities arranged in a series and provided in a structure which is evacuated so that a vacuum inductance is provided between each adder cavity and the structure. An energy storage system for the adder cavities includes a pulsed current source and a respective plurality of bipolar converting networks connected thereto. The bipolar high-voltage, high-repetition-rate square pulse train sets and resets the cavities.

Structural and energetic consequences of mutations in a solvated hydrophobic cavity

NASA Technical Reports Server (NTRS)

Adamek, D. H.; Guerrero, L.; Blaber, M.; Caspar, D. L. D.

2005-01-01

The structural and energetic consequences of modifications to the hydrophobic cavity of interleukin 1-beta (IL-1beta) are described. Previous reports demonstrated that the entirely hydrophobic cavity of IL-1beta contains positionally disordered water. To gain a better understanding of the nature of this cavity and the water therein, a number of mutant proteins were constructed by site-directed mutagenesis, designed to result in altered hydrophobicity of the cavity. These mutations involve the replacement of specific phenylalanine residues, which circumscribe the cavity, with tyrosine, tryptophan, leucine and isoleucine. Using differential scanning calorimetry to determine the relative stabilities of the wild-type and mutant proteins, we found all of the mutants to be destabilizing. X-ray crystallography was used to identify the structural consequences of the mutations. No clear correlation between the hydrophobicities of the specific side-chains introduced and the resulting stabilities was found.

Tree phylogenetic diversity promotes host-parasitoid interactions.

PubMed

Staab, Michael; Bruelheide, Helge; Durka, Walter; Michalski, Stefan; Purschke, Oliver; Zhu, Chao-Dong; Klein, Alexandra-Maria

2016-07-13

Evidence from grassland experiments suggests that a plant community's phylogenetic diversity (PD) is a strong predictor of ecosystem processes, even stronger than species richness per se This has, however, never been extended to species-rich forests and host-parasitoid interactions. We used cavity-nesting Hymenoptera and their parasitoids collected in a subtropical forest as a model system to test whether hosts, parasitoids, and their interactions are influenced by tree PD and a comprehensive set of environmental variables, including tree species richness. Parasitism rate and parasitoid abundance were positively correlated with tree PD. All variables describing parasitoids decreased with elevation, and were, except parasitism rate, dependent on host abundance. Quantitative descriptors of host-parasitoid networks were independent of the environment. Our study indicates that host-parasitoid interactions in species-rich forests are related to the PD of the tree community, which influences parasitism rates through parasitoid abundance. We show that effects of tree community PD are much stronger than effects of tree species richness, can cascade to high trophic levels, and promote trophic interactions. As during habitat modification phylogenetic information is usually lost non-randomly, even species-rich habitats may not be able to continuously provide the ecosystem process parasitism if the evolutionarily most distinct plant lineages vanish. © 2016 The Author(s).

Proceedings of the second Missouri Ozark Forest Ecosystem Project Symposium: Post-treatment results of the landscape experiment

Treesearch

S.R. Shifley; J.M., eds. Kabrick

2002-01-01

Presents the short-term effects of even-aged, uneven-aged, and no-harvest management on forest ecosystems included in the Missouri Ozark Forest Project (MOFEP). Individual papers address study design, site history, species diversity, genetic diversity, woody vegetation, ground layer vegetation, stump sprouting, tree cavities, logging disturbance, avian communities,...

Availability and abundance of prey for the red-cockaded woodpecker

Treesearch

James L. Hanula; Scott Horn

2004-01-01

Over a 10-year period we investigated red-cockaded woodpecker (Picoides borealis) prey use, sources of prey, prey distribution within trees and stands, and how forest management decisions affect prey abundance in South Carolina, Alabama, Georgia, and Florida. Cameras were operated at 31 nest cavities to record nest visits with prey in 4 locations...

Influence of habitat and number of nestlings on partial brood loss in red-cockaded woodpeckers

Treesearch

James R. McCormick; Richard N. Conner; D. Brent Burt; Daniel Saenz

2004-01-01

Partial brood loss in red-cockaded woodpeckers (Picoides borealis) was studied during 2 breeding seasons in eastern Texas. The timing of partial brood loss, group size, number of initial nestlings, number of birds fledged, and habitat characteristics of the group's cavity-tree cluster were examined for 37 woodpecker groups in loblolly- (

Thermal Properties of A Solar Coronal Cavity Observed with the X-Ray Telescope on Hinode

NASA Technical Reports Server (NTRS)

Reeves, Katherine K.; Gibson, Sarah E.; Kucera, Theresa A.; Hudson, Hugh S.; Kano, Ryouhei

2011-01-01

Coronal cavities are voids in coronal emission often observed above high latitude filament channels. Sometimes, these cavities have areas of bright X-ray emission in their centers. In this study, we use data from the X-ray Telescope (XRT) on the Hinode satellite to examine the thermal emission properties of a cavity observed during July 2008 that contains bright X-ray emission in its center. Using ratios of XRT filters, we find evidence for elevated temperatures in the cavity center. The area of elevated temperature evolves from a ring-shaped structure at the beginning of the observation, to an elongated structure two days later, finally appearing as a compact round source four days after the initial observation. We use a morphological model to fit the cavity emission, and find that a uniform structure running through the cavity does not fit the observations well. Instead, the observations are reproduced by modeling several short cylindrical cavity "cores" with different parameters on different days. These changing core parameters may be due to some observed activity heating different parts of the cavity core at different times. We find that core temperatures of 1.75 MK, 1.7 MK and 2.0 MK (for July 19, July 21 and July 23, respectively) in the model lead to structures that are consistent with the data, and that line-of-sight effects serve to lower the effective temperature derived from the filter ratio.

Airfoil for a gas turbine

DOEpatents

Liang, George [Palm City, FL

2011-01-18

An airfoil is provided for a gas turbine comprising an outer structure comprising a first wall, an inner structure comprising a second wall spaced relative to the first wall such that a cooling gap is defined between at least portions of the first and second walls, and seal structure provided within the cooling gap between the first and second walls for separating the cooling gap into first and second cooling fluid impingement gaps. An inner surface of the second wall may define an inner cavity. The inner structure may further comprise a separating member for separating the inner cavity of the inner structure into a cooling fluid supply cavity and a cooling fluid collector cavity. The second wall may comprise at least one first impingement passage, at least one second impingement passage, and at least one bleed passage.

Failure analysis of energy storage spring in automobile composite brake chamber

NASA Astrophysics Data System (ADS)

Luo, Zai; Wei, Qing; Hu, Xiaofeng

2015-02-01

This paper set energy storage spring of parking brake cavity, part of automobile composite brake chamber, as the research object. And constructed the fault tree model of energy storage spring which caused parking brake failure based on the fault tree analysis method. Next, the parking brake failure model of energy storage spring was established by analyzing the working principle of composite brake chamber. Finally, the data of working load and the push rod stroke measured by comprehensive test-bed valve was used to validate the failure model above. The experimental result shows that the failure model can distinguish whether the energy storage spring is faulted.

Large-Diameter InGaAs/AlGaAs Vertical-Cavity Surface-Emitting Lasers with Low Threshold Current Density Fabricated Using a Simple Chemical Etch Process

DTIC Science & Technology

1994-03-01

Epitaxial structure of vertical cavity surface - emitting laser ( VCSEL ...diameter (75 tum < d< 150 prm) vertical - cavity surface - emitting lasers fabricated from an epitaxial structure containing a single In0 .2Ga 8.,As quantum...development of vertical - cavity surface - emitting lasers ( VCSELs ) [1] has enabled III-V semiconductor technology to be applied to cer- tain optical

Mapping of ligand-binding cavities in proteins.

PubMed

Andersson, C David; Chen, Brian Y; Linusson, Anna

2010-05-01

The complex interactions between proteins and small organic molecules (ligands) are intensively studied because they play key roles in biological processes and drug activities. Here, we present a novel approach to characterize and map the ligand-binding cavities of proteins without direct geometric comparison of structures, based on Principal Component Analysis of cavity properties (related mainly to size, polarity, and charge). This approach can provide valuable information on the similarities and dissimilarities, of binding cavities due to mutations, between-species differences and flexibility upon ligand-binding. The presented results show that information on ligand-binding cavity variations can complement information on protein similarity obtained from sequence comparisons. The predictive aspect of the method is exemplified by successful predictions of serine proteases that were not included in the model construction. The presented strategy to compare ligand-binding cavities of related and unrelated proteins has many potential applications within protein and medicinal chemistry, for example in the characterization and mapping of "orphan structures", selection of protein structures for docking studies in structure-based design, and identification of proteins for selectivity screens in drug design programs. 2009 Wiley-Liss, Inc.

Apparatus and method for plasma processing of SRF cavities

NASA Astrophysics Data System (ADS)

Upadhyay, J.; Im, Do; Peshl, J.; Bašović, M.; Popović, S.; Valente-Feliciano, A.-M.; Phillips, L.; Vušković, L.

2016-05-01

An apparatus and a method are described for plasma etching of the inner surface of superconducting radio frequency (SRF) cavities. Accelerator SRF cavities are formed into a variable-diameter cylindrical structure made of bulk niobium, for resonant generation of the particle accelerating field. The etch rate non-uniformity due to depletion of the radicals has been overcome by the simultaneous movement of the gas flow inlet and the inner electrode. An effective shape of the inner electrode to reduce the plasma asymmetry for the coaxial cylindrical rf plasma reactor is determined and implemented in the cavity processing method. The processing was accomplished by moving axially the inner electrode and the gas flow inlet in a step-wise way to establish segmented plasma columns. The test structure was a pillbox cavity made of steel of similar dimension to the standard SRF cavity. This was adopted to experimentally verify the plasma surface reaction on cylindrical structures with variable diameter using the segmented plasma generation approach. The pill box cavity is filled with niobium ring- and disk-type samples and the etch rate of these samples was measured.

Mode conversion in metal-insulator-metal waveguide with a shifted cavity

NASA Astrophysics Data System (ADS)

Wang, Yueke; Yan, Xin

2018-01-01

We propose a method, which is utilized to achieve the plasmonic mode conversion in metal-insulator-metal (MIM) waveguide, theoretically. Our proposed structure is composed of bus waveguides and a shifted cavity. The shifted cavity can choose out a plasmonic mode (a- or s-mode) when it is in Fabry-Perot (FP) resonance. The length of the shifted cavity L is carefully chosen, and our structure can achieve the mode conversion between a- and s-mode in the communication region. Besides, our proposed structure can also achieve plasmonic mode-division multiplexing. All the numerical simulations are carried on by the finite element method to verify our design.

Near field optical probe for critical dimension measurements

DOEpatents

Stallard, Brian R.; Kaushik, Sumanth

1999-01-01

A resonant planar optical waveguide probe for measuring critical dimensions on an object in the range of 100 nm and below. The optical waveguide includes a central resonant cavity flanked by Bragg reflector layers with input and output means at either end. Light is supplied by a narrow bandwidth laser source. Light resonating in the cavity creates an evanescent electrical field. The object with the structures to be measured is translated past the resonant cavity. The refractive index contrasts presented by the structures perturb the field and cause variations in the intensity of the light in the cavity. The topography of the structures is determined from these variations.

Observations and theory of the AMPTE magnetotail barium releases

NASA Technical Reports Server (NTRS)

Bernhardt, P. A.; Roussel-Dupre, R. A.; Pongratz, M. B.; Haerendel, G.; Valenzuela, A.

1987-01-01

The barium releases in the magnetotail during the Active Magnetospheric Particle Tracer Explorers (AMPTE) operation were monitored by ground-based imagers and by instruments on the Ion Release Module. After each release, the data show the formation of a structured diamagnetic cavity. The cavity grows until the dynamic pressure of the expanding ions balances the magnetic pressure on its surface. The magnetic field inside the cavity is zero. The barium ions collect on the surface of the cavity, producing a shell. Plasma irregularities form along magnetic field lines draped over the surface of the cavity. The scale size of the irregularities is nearly equal to the thickness of the shell. The evolution and structuring of the diamagnetic cavity are modeled using magnetohydrodynamics theory.

Cavity evolution at grain boundaries as a function of radiation damage and thermal conditions in nanocrystalline nickel

DOE PAGES

Muntifering, Brittany; Blair, Sarah Jane; Gong, Cajer; ...

2015-12-30

Enhanced radiation tolerance of nanostructured metals is attributed to the high density of interfaces that can absorb radiation-induced defects. Here, cavity evolution mechanisms during cascade damage, helium implantation, and annealing of nanocrystalline nickel are characterized via in situ transmission electron microscopy (TEM). Films subjected to self-ion irradiation followed by helium implantation developed evenly distributed cavity structures, whereas films exposed in the reversed order developed cavities preferentially distributed along grain boundaries. Post-irradiation annealing and orientation mapping demonstrated uniform cavity growth in the nanocrystalline structure, and cavities spanning multiple grains. Furthermore, these mechanisms suggest limited ability to reduce swelling, despite the stabilitymore » of the nanostructure.« less

Fundamental studies of structure borne noise for advanced turboprop applications

NASA Technical Reports Server (NTRS)

Eversman, W.; Koval, L. R.

1985-01-01

The transmission of sound generated by wing-mounted, advanced turboprop engines into the cabin interior via structural paths is considered. The structural model employed is a beam representation of the wing box carried into the fuselage via a representative frame type of carry through structure. The structure for the cabin cavity is a stiffened shell of rectangular or cylindrical geometry. The structure is modelled using a finite element formulation and the acoustic cavity is modelled using an analytical representation appropriate for the geometry. The structural and acoustic models are coupled by the use of hard wall cavity modes for the interior and vacuum structural modes for the shell. The coupling is accomplished using a combination of analytical and finite element models. The advantage is the substantial reduction in dimensionality achieved by modelling the interior analytically. The mathematical model for the interior noise problem is demonstrated with a simple plate/cavity system which has all of the features of the fuselage interior noise problem.

A holistic approach to determine tree structural complexity based on laser scanning data and fractal analysis.

PubMed

Seidel, Dominik

2018-01-01

The three-dimensional forest structure affects many ecosystem functions and services provided by forests. As forests are made of trees it seems reasonable to approach their structure by investigating individual tree structure. Based on three-dimensional point clouds from laser scanning, a newly developed holistic approach is presented that enables to calculate the box dimension as a measure of structural complexity of individual trees using fractal analysis. It was found that the box dimension of trees was significantly different among the tested species, among trees belonging to the same species but exposed to different growing conditions (at gap vs. forest interior) or to different kinds of competition (intraspecific vs. interspecific). Furthermore, it was shown that the box dimension is positively related to the trees' growth rate. The box dimension was identified as an easy to calculate measure that integrates the effect of several external drivers of tree structure, such as competition strength and type, while simultaneously providing information on structure-related properties, like tree growth.

Recruiting Conventional Tree Architecture Models into State-of-the-Art LiDAR Mapping for Investigating Tree Growth Habits in Structure.

PubMed

Lin, Yi; Jiang, Miao; Pellikka, Petri; Heiskanen, Janne

2018-01-01

Mensuration of tree growth habits is of considerable importance for understanding forest ecosystem processes and forest biophysical responses to climate changes. However, the complexity of tree crown morphology that is typically formed after many years of growth tends to render it a non-trivial task, even for the state-of-the-art 3D forest mapping technology-light detection and ranging (LiDAR). Fortunately, botanists have deduced the large structural diversity of tree forms into only a limited number of tree architecture models, which can present a-priori knowledge about tree structure, growth, and other attributes for different species. This study attempted to recruit Hallé architecture models (HAMs) into LiDAR mapping to investigate tree growth habits in structure. First, following the HAM-characterized tree structure organization rules, we run the kernel procedure of tree species classification based on the LiDAR-collected point clouds using a support vector machine classifier in the leave-one-out-for-cross-validation mode. Then, the HAM corresponding to each of the classified tree species was identified based on expert knowledge, assisted by the comparison of the LiDAR-derived feature parameters. Next, the tree growth habits in structure for each of the tree species were derived from the determined HAM. In the case of four tree species growing in the boreal environment, the tests indicated that the classification accuracy reached 85.0%, and their growth habits could be derived by qualitative and quantitative means. Overall, the strategy of recruiting conventional HAMs into LiDAR mapping for investigating tree growth habits in structure was validated, thereby paving a new way for efficiently reflecting tree growth habits and projecting forest structure dynamics.

Recruiting Conventional Tree Architecture Models into State-of-the-Art LiDAR Mapping for Investigating Tree Growth Habits in Structure

PubMed Central

Lin, Yi; Jiang, Miao; Pellikka, Petri; Heiskanen, Janne

2018-01-01

Mensuration of tree growth habits is of considerable importance for understanding forest ecosystem processes and forest biophysical responses to climate changes. However, the complexity of tree crown morphology that is typically formed after many years of growth tends to render it a non-trivial task, even for the state-of-the-art 3D forest mapping technology—light detection and ranging (LiDAR). Fortunately, botanists have deduced the large structural diversity of tree forms into only a limited number of tree architecture models, which can present a-priori knowledge about tree structure, growth, and other attributes for different species. This study attempted to recruit Hallé architecture models (HAMs) into LiDAR mapping to investigate tree growth habits in structure. First, following the HAM-characterized tree structure organization rules, we run the kernel procedure of tree species classification based on the LiDAR-collected point clouds using a support vector machine classifier in the leave-one-out-for-cross-validation mode. Then, the HAM corresponding to each of the classified tree species was identified based on expert knowledge, assisted by the comparison of the LiDAR-derived feature parameters. Next, the tree growth habits in structure for each of the tree species were derived from the determined HAM. In the case of four tree species growing in the boreal environment, the tests indicated that the classification accuracy reached 85.0%, and their growth habits could be derived by qualitative and quantitative means. Overall, the strategy of recruiting conventional HAMs into LiDAR mapping for investigating tree growth habits in structure was validated, thereby paving a new way for efficiently reflecting tree growth habits and projecting forest structure dynamics. PMID:29515616

Dental cavities

MedlinePlus

... this page: //medlineplus.gov/ency/article/001055.htm Dental cavities To use the sharing features on this page, please enable JavaScript. Dental cavities are holes (or structural damage) in the ...

CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction.

PubMed

Xu, Youjun; Wang, Shiwei; Hu, Qiwan; Gao, Shuaishi; Ma, Xiaomin; Zhang, Weilin; Shen, Yihang; Chen, Fangjin; Lai, Luhua; Pei, Jianfeng

2018-05-10

CavityPlus is a web server that offers protein cavity detection and various functional analyses. Using protein three-dimensional structural information as the input, CavityPlus applies CAVITY to detect potential binding sites on the surface of a given protein structure and rank them based on ligandability and druggability scores. These potential binding sites can be further analysed using three submodules, CavPharmer, CorrSite, and CovCys. CavPharmer uses a receptor-based pharmacophore modelling program, Pocket, to automatically extract pharmacophore features within cavities. CorrSite identifies potential allosteric ligand-binding sites based on motion correlation analyses between cavities. CovCys automatically detects druggable cysteine residues, which is especially useful to identify novel binding sites for designing covalent allosteric ligands. Overall, CavityPlus provides an integrated platform for analysing comprehensive properties of protein binding cavities. Such analyses are useful for many aspects of drug design and discovery, including target selection and identification, virtual screening, de novo drug design, and allosteric and covalent-binding drug design. The CavityPlus web server is freely available at http://repharma.pku.edu.cn/cavityplus or http://www.pkumdl.cn/cavityplus.

A new look at a polar crown cavity as observed by SDO/AIA. Structure and dynamics

NASA Astrophysics Data System (ADS)

Régnier, S.; Walsh, R. W.; Alexander, C. E.

2011-09-01

Context. The Solar Dynamics Observatory (SDO) was launched in February 2010 and is now providing an unprecedented view of the solar activity at high spatial resolution and high cadence covering a broad range of temperature layers of the atmosphere. Aims: We aim at defining the structure of a polar crown cavity and describing its evolution during the erupting process. Methods: We use the high-cadence time series of SDO/AIA observations at 304 Å (50 000 K) and 171 Å (0.6 MK) to determine the structure of the polar crown cavity and its associated plasma, as well as the evolution of the cavity during the different phases of the eruption. We report on the observations recorded on 13 June 2010 located on the north-west limb. Results: We observe coronal plasma shaped by magnetic field lines with a negative curvature (U-shape) sitting at the bottom of a cavity. The cavity is located just above the polar crown filament material. We thus observe the inner part of the cavity above the filament as depicted in the classical three part coronal mass ejection (CME) model composed of a filament, a cavity, and a CME front. The filament (in this case a polar crown filament) is part of the cavity, and it makes a continuous structuring from the filament to the CME front depicted by concentric ellipses (in a 2D cartoon). Conclusions: We propose to define a polar crown cavity as a density depletion sitting above denser polar crown filament plasma drained down the cavity by gravity. As part of the polar crown filament, plasma at different temperatures (ranging from 50 000 K to 0.6 MK) is observed at the same location on the cavity dips and sustained by a competition between the gravity and the curvature of magnetic field lines. The eruption of the polar crown cavity as a solid body can be decomposed into two phases: a slow rise at a speed of 0.6 km s-1 and an acceleration phase at a mean speed of 25 km s-1. Two movies are only available at http://www.aanda.org

Method of varying a characteristic of an optical vertical cavity structure formed by metalorganic vapor phase epitaxy

DOEpatents

Hou, Hong Q.; Coltrin, Michael E.; Choquette, Kent D.

2001-01-01

A process for forming an array of vertical cavity optical resonant structures wherein the structures in the array have different detection or emission wavelengths. The process uses selective area growth (SAG) in conjunction with annular masks of differing dimensions to control the thickness and chemical composition of the materials in the optical cavities in conjunction with a metalorganic vapor phase epitaxy (MOVPE) process to build these arrays.

Injection of 2,4-D to remove hardwood midstory within red-cockaded woodpecker colony areas

Treesearch

Richard N. Conner

1989-01-01

Red-cockaded woodpecker (Picoides borealis) colonies on the Angelina National Forest were monitored from 1984 to 1986, after hardwoods on the site had been injected with the herbicide 2,4-D. The herbicide effectively reduced the hardwood midstory; however, possible toxicity to woodpeckers and cavity tree mortality are problems associated with the...

Compound parabolic concentrator with cavity for tubular absorbers

DOEpatents

Winston, Roland

1983-01-01

A compond parabolic concentrator with a V-shaped cavity is provided in which an optical receiver is emplaced. The cavity redirects all energy entering between the receiver and the cavity structure onto the receiver, if the optical receiver is emplaced a distance from the cavity not greater than 0.27 r (where r is the radius of the receiver).

Molecular dynamics study of naturally existing cavity couplings in proteins.

PubMed

Barbany, Montserrat; Meyer, Tim; Hospital, Adam; Faustino, Ignacio; D'Abramo, Marco; Morata, Jordi; Orozco, Modesto; de la Cruz, Xavier

2015-01-01

Couplings between protein sub-structures are a common property of protein dynamics. Some of these couplings are especially interesting since they relate to function and its regulation. In this article we have studied the case of cavity couplings because cavities can host functional sites, allosteric sites, and are the locus of interactions with the cell milieu. We have divided this problem into two parts. In the first part, we have explored the presence of cavity couplings in the natural dynamics of 75 proteins, using 20 ns molecular dynamics simulations. For each of these proteins, we have obtained two trajectories around their native state. After applying a stringent filtering procedure, we found significant cavity correlations in 60% of the proteins. We analyze and discuss the structure origins of these correlations, including neighbourhood, cavity distance, etc. In the second part of our study, we have used longer simulations (≥100 ns) from the MoDEL project, to obtain a broader view of cavity couplings, particularly about their dependence on time. Using moving window computations we explored the fluctuations of cavity couplings along time, finding that these couplings could fluctuate substantially during the trajectory, reaching in several cases correlations above 0.25/0.5. In summary, we describe the structural origin and the variations with time of cavity couplings. We complete our work with a brief discussion of the biological implications of these results.

Molecular Dynamics Study of Naturally Existing Cavity Couplings in Proteins

PubMed Central

Barbany, Montserrat; Meyer, Tim; Hospital, Adam; Faustino, Ignacio; D'Abramo, Marco; Morata, Jordi; Orozco, Modesto; de la Cruz, Xavier

2015-01-01

Couplings between protein sub-structures are a common property of protein dynamics. Some of these couplings are especially interesting since they relate to function and its regulation. In this article we have studied the case of cavity couplings because cavities can host functional sites, allosteric sites, and are the locus of interactions with the cell milieu. We have divided this problem into two parts. In the first part, we have explored the presence of cavity couplings in the natural dynamics of 75 proteins, using 20 ns molecular dynamics simulations. For each of these proteins, we have obtained two trajectories around their native state. After applying a stringent filtering procedure, we found significant cavity correlations in 60% of the proteins. We analyze and discuss the structure origins of these correlations, including neighbourhood, cavity distance, etc. In the second part of our study, we have used longer simulations (≥100ns) from the MoDEL project, to obtain a broader view of cavity couplings, particularly about their dependence on time. Using moving window computations we explored the fluctuations of cavity couplings along time, finding that these couplings could fluctuate substantially during the trajectory, reaching in several cases correlations above 0.25/0.5. In summary, we describe the structural origin and the variations with time of cavity couplings. We complete our work with a brief discussion of the biological implications of these results. PMID:25816327

A density based algorithm to detect cavities and holes from planar points

NASA Astrophysics Data System (ADS)

Zhu, Jie; Sun, Yizhong; Pang, Yueyong

2017-12-01

Delaunay-based shape reconstruction algorithms are widely used in approximating the shape from planar points. However, these algorithms cannot ensure the optimality of varied reconstructed cavity boundaries and hole boundaries. This inadequate reconstruction can be primarily attributed to the lack of efficient mathematic formulation for the two structures (hole and cavity). In this paper, we develop an efficient algorithm for generating cavities and holes from planar points. The algorithm yields the final boundary based on an iterative removal of the Delaunay triangulation. Our algorithm is mainly divided into two steps, namely, rough and refined shape reconstructions. The rough shape reconstruction performed by the algorithm is controlled by a relative parameter. Based on the rough result, the refined shape reconstruction mainly aims to detect holes and pure cavities. Cavity and hole are conceptualized as a structure with a low-density region surrounded by the high-density region. With this structure, cavity and hole are characterized by a mathematic formulation called as compactness of point formed by the length variation of the edges incident to point in Delaunay triangulation. The boundaries of cavity and hole are then found by locating a shape gradient change in compactness of point set. The experimental comparison with other shape reconstruction approaches shows that the proposed algorithm is able to accurately yield the boundaries of cavity and hole with varying point set densities and distributions.

Comparative population structure of cavity-nesting sea ducks

USGS Publications Warehouse

Pearce, John M.; Eadie, John M.; Savard, Jean-Pierre L.; Christensen, Thomas K.; Berdeen, James; Taylor, Eric J.; Boyd, Sean; Einarsson, Árni

2014-01-01

A growing collection of mtDNA genetic information from waterfowl species across North America suggests that larger-bodied cavity-nesting species exhibit greater levels of population differentiation than smaller-bodied congeners. Although little is known about nest-cavity availability for these species, one hypothesis to explain differences in population structure is reduced dispersal tendency of larger-bodied cavity-nesting species due to limited abundance of large cavities. To investigate this hypothesis, we examined population structure of three cavity-nesting waterfowl species distributed across much of North America: Barrow's Goldeneye (Bucephala islandica), Common Goldeneye (B. clangula), and Bufflehead (B. albeola). We compared patterns of population structure using both variation in mtDNA control-region sequences and band-recovery data for the same species and geographic regions. Results were highly congruent between data types, showing structured population patterns for Barrow's and Common Goldeneye but not for Bufflehead. Consistent with our prediction, the smallest cavity-nesting species, the Bufflehead, exhibited the lowest level of population differentiation due to increased dispersal and gene flow. Results provide evidence for discrete Old and New World populations of Common Goldeneye and for differentiation of regional groups of both goldeneye species in Alaska, the Pacific Northwest, and the eastern coast of North America. Results presented here will aid management objectives that require an understanding of population delineation and migratory connectivity between breeding and wintering areas. Comparative studies such as this one highlight factors that may drive patterns of genetic diversity and population trends.

Quasi-monolithic tunable optical resonator

NASA Technical Reports Server (NTRS)

Arbore, Mark (Inventor); Tapos, Francisc (Inventor)

2003-01-01

An optical resonator has a piezoelectric element attached to a quasi-monolithic structure. The quasi-monolithic structure defines an optical path. Mirrors attached to the structure deflect light along the optical path. The piezoelectric element controllably strains the quasi-monolithic structure to change a length of the optical path by about 1 micron. A first feedback loop coupled to the piezoelectric element provides fine control over the cavity length. The resonator may include a thermally actuated spacer attached to the cavity and a mirror attached to the spacer. The thermally actuated spacer adjusts the cavity length by up to about 20 microns. A second feedback loop coupled to the sensor and heater provides a coarse control over the cavity length. An alternative embodiment provides a quasi-monolithic optical parametric oscillator (OPO). This embodiment includes a non-linear optical element within the resonator cavity along the optical path. Such an OPO configuration is broadly tunable and capable of mode-hop free operation for periods of 24 hours or more.

Method of fabricating conductive electrodes on the front and backside of a thin film structure

DOEpatents

Tabada, Phillipe J [Roseville, CA; Tabada, legal representative, Melody; Pannu, Satinderpall S [Pleasanton, CA

2011-05-22

A method of fabricating a thin film device having conductive front and backside electrodes or contacts. Top-side cavities are first formed on a first dielectric layer, followed by the deposition of a metal layer on the first dielectric layer to fill the cavities. Defined metal structures are etched from the metal layer to include the cavity-filled metal, followed by depositing a second dielectric layer over the metal structures. Additional levels of defined metal structures may be formed in a similar manner with vias connecting metal structures between levels. After a final dielectric layer is deposited, a top surface of a metal structure of an uppermost metal layer is exposed through the final dielectric layer to form a front-side electrode, and a bottom surface of a cavity-filled portion of a metal structure of a lowermost metal layer is also exposed through the first dielectric layer to form a back-side electrode.

Tree Colors: Color Schemes for Tree-Structured Data.

PubMed

Tennekes, Martijn; de Jonge, Edwin

2014-12-01

We present a method to map tree structures to colors from the Hue-Chroma-Luminance color model, which is known for its well balanced perceptual properties. The Tree Colors method can be tuned with several parameters, whose effect on the resulting color schemes is discussed in detail. We provide a free and open source implementation with sensible parameter defaults. Categorical data are very common in statistical graphics, and often these categories form a classification tree. We evaluate applying Tree Colors to tree structured data with a survey on a large group of users from a national statistical institute. Our user study suggests that Tree Colors are useful, not only for improving node-link diagrams, but also for unveiling tree structure in non-hierarchical visualizations.

Fluid pump having magnetic drive

DOEpatents

Phillips, Benjamin A.; Roeder, Jr., John; Harvey, Michael N.

1996-10-15

A pump includes a housing defining a cavity, an axial bore coaxially communicating with the cavity, at least one radial bore radially extending between the cavity and an outlet, and an inlet communicating with the radial bore intermediate to the cavity and the outlet. A crankshaft having a longitudinal axis is disposed in the axial bore for rotation about the axis and includes an eccentric portion disposed in the cavity. A piston having a base is disposed in the cavity, and has a head disposed in the radial bore for slidable reciprocation between a discharge position proximate the outlet and an intake position at the inlet between the cavity and the outlet. A cage structure including a cage and a slider block connects the piston base to the eccentric portion of the crankshaft for transforming rotation of the eccentric portion in the cavity to reciprocation of the piston in the radial bore. A valve structure opens and closes the outlet in response to movement of the piston head between the discharge position to the intake position.

Response of a store with tunable natural frequencies in compressible cavity flow

DOE PAGES

Wagner, Justin L.; Casper, Katya M.; Beresh, Steven J.; ...

2016-05-20

Fluid–structure interactions that occur during aircraft internal store carriage were experimentally explored at Mach 0.58–1.47 using a generic, aerodynamic store installed in a rectangular cavity having a length-to-depth ratio of seven. The store vibrated in response to the cavity flow at its natural structural frequencies, and it exhibited a directionally dependent response to cavity resonance frequencies. Cavity tones excited the store in the streamwise and wall-normal directions consistently, whereas the spanwise response to cavity tones was much more limited. Increased surface area associated with tail fins raised vibration levels. The store had interchangeable components to vary its natural frequencies bymore » about 10–300 Hz. By tuning natural frequencies, mode-matched cases were explored where a prominent cavity tone frequency matched a structural natural frequency of the store. Mode matching in the streamwise and wall-normal directions produced substantial increases in peak store vibrations, though the response of the store remained linear with dynamic pressure. Near mode-matched frequencies, changes in cavity tone frequencies of only 1% altered store peak vibrations by as much as a factor of two. In conclusion, mode matching in the spanwise direction did little to increase vibrations.« less

Multi-Mode Cavity Accelerator Structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jiang, Yong; Hirshfield, Jay Leonard

2016-11-10

This project aimed to develop a prototype for a novel accelerator structure comprising coupled cavities that are tuned to support modes with harmonically-related eigenfrequencies, with the goal of reaching an acceleration gradient >200 MeV/m and a breakdown rate <10 -7/pulse/meter. Phase I involved computations, design, and preliminary engineering of a prototype multi-harmonic cavity accelerator structure; plus tests of a bimodal cavity. A computational procedure was used to design an optimized profile for a bimodal cavity with high shunt impedance and low surface fields to maximize the reduction in temperature rise ΔT. This cavity supports the TM010 mode and its 2ndmore » harmonic TM011 mode. Its fundamental frequency is at 12 GHz, to benchmark against the empirical criteria proposed within the worldwide High Gradient collaboration for X-band copper structures; namely, a surface electric field E sur max< 260 MV/m and pulsed surface heating ΔT max< 56 °K. With optimized geometry, amplitude and relative phase of the two modes, reductions are found in surface pulsed heating, modified Poynting vector, and total RF power—as compared with operation at the same acceleration gradient using only the fundamental mode.« less

Asymptotic modal analysis and statistical energy analysis

NASA Technical Reports Server (NTRS)

Dowell, Earl H.

1988-01-01

Statistical Energy Analysis (SEA) is defined by considering the asymptotic limit of Classical Modal Analysis, an approach called Asymptotic Modal Analysis (AMA). The general approach is described for both structural and acoustical systems. The theoretical foundation is presented for structural systems, and experimental verification is presented for a structural plate responding to a random force. Work accomplished subsequent to the grant initiation focusses on the acoustic response of an interior cavity (i.e., an aircraft or spacecraft fuselage) with a portion of the wall vibrating in a large number of structural modes. First results were presented at the ASME Winter Annual Meeting in December, 1987, and accepted for publication in the Journal of Vibration, Acoustics, Stress and Reliability in Design. It is shown that asymptotically as the number of acoustic modes excited becomes large, the pressure level in the cavity becomes uniform except at the cavity boundaries. However, the mean square pressure at the cavity corner, edge and wall is, respectively, 8, 4, and 2 times the value in the cavity interior. Also it is shown that when the portion of the wall which is vibrating is near a cavity corner or edge, the response is significantly higher.

The “gating” residues Ile199 and Tyr326 in human monoamine oxidase B function in substrate and inhibitor recognition

PubMed Central

Milczek, Erika M.; Binda, Claudia; Rovida, Stefano; Mattevi, Andrea; Edmondson, Dale E.

2011-01-01

Summary The major structural difference between human monoamine oxidases A (MAO A) and B (MAO B) is that MAO A has a monopartite substrate cavity of ~550 Å3 volume and MAO B contains a dipartite cavity structure with volumes of ~290 Å3 (entrance cavity) and ~400 Å3 (substrate cavity). Ile199 and Tyr326 side chains separate these two cavities in MAO B. To probe the function of these gating residues, Ile199Ala and Ile199Ala Tyr326Ala mutant forms of MAO B were investigated. Structural data on the Ile199Ala MAO B mutant show no alterations in active site geometries compared to WT enzyme while the Ile199Ala-Tyr326Ala MAO B mutant exhibits alterations in residues 100–103 which are part of the loop gating the entrance to the active site. Both mutant enzymes exhibit catalytic properties with increased amine KM but unaltered kcat values. The altered KM values on mutation are attributed to the influence of the cavity structure in the binding and subsequent deprotonation of the amine substrate. Both mutant enzymes exhibit weaker binding affinities relative to WT enzyme for small reversible inhibitors. Ile199Ala MAO B exhibits an increase in binding affinity for reversible MAO B specific inhibitors which bridge both cavities. The Ile199Ala-Tyr326Ala double mutant exhibits inhibitor binding properties more similar to those of MAO A than to MAO B. These results demonstrate the bipartite cavity structure in MAO B plays an important role in substrate and inhibitor recognition to distinguish its specificities from those of MAO A and provides insights into specific reversible inhibitor design for these membrane-bound enzymes. PMID:21978362

TreeNetViz: revealing patterns of networks over tree structures.

PubMed

Gou, Liang; Zhang, Xiaolong Luke

2011-12-01

Network data often contain important attributes from various dimensions such as social affiliations and areas of expertise in a social network. If such attributes exhibit a tree structure, visualizing a compound graph consisting of tree and network structures becomes complicated. How to visually reveal patterns of a network over a tree has not been fully studied. In this paper, we propose a compound graph model, TreeNet, to support visualization and analysis of a network at multiple levels of aggregation over a tree. We also present a visualization design, TreeNetViz, to offer the multiscale and cross-scale exploration and interaction of a TreeNet graph. TreeNetViz uses a Radial, Space-Filling (RSF) visualization to represent the tree structure, a circle layout with novel optimization to show aggregated networks derived from TreeNet, and an edge bundling technique to reduce visual complexity. Our circular layout algorithm reduces both total edge-crossings and edge length and also considers hierarchical structure constraints and edge weight in a TreeNet graph. These experiments illustrate that the algorithm can reduce visual cluttering in TreeNet graphs. Our case study also shows that TreeNetViz has the potential to support the analysis of a compound graph by revealing multiscale and cross-scale network patterns. © 2011 IEEE

Four cavity efficiency enhanced magnetically insulated line oscillator

DOEpatents

Lemke, Raymond W.; Clark, Miles C.; Calico, Steve E.

1998-04-21

A four cavity, efficient magnetically insulated line oscillator (C4-E MILO) having seven vanes and six cavities formed within a tube-like structure surrounding a cathode. The C4-E MILO has a primary slow wave structure which is comprised of four vanes and the four cavities located near a microwave exit end of the tube-like structure. The primary slow wave structure is the four cavity (C4) portion of the magnetically insulated line oscillator (MILO). An RF choke is provided which is comprised of three of the vanes and two of the cavities. The RF choke is located near a pulsed power source portion of the tube-like structure surrounding the cathode. The RF choke increases feedback in the primary slow wave structure, prevents microwaves generated in the primary slow wave structure from propagating towards the pulsed power source and modifies downstream electron current so as to enhance microwave power generation. A beam dump/extractor is located at the exit end of the oscillator tube for extracting microwave power from the oscillator, and in conjunction with an RF extractor vane, which comprises the fourth vane of the primary slow wave structure (nearest the exit) having a larger gap radius than the other vanes of the primary SWS, comprises an RF extractor. Uninsulated electron flow is returned downstream towards the exit along an anode/beam dump region located between the beam dump/extractor and the exit where the RF is radiated at said RF extractor vane located near the exit and the uninsulated electron flow is disposed at the beam dump/extractor.

Four cavity efficiency enhanced magnetically insulated line oscillator

DOEpatents

Lemke, R.W.; Clark, M.C.; Calico, S.E.

1998-04-21

A four cavity, efficient magnetically insulated line oscillator (C4-E MILO) having seven vanes and six cavities formed within a tube-like structure surrounding a cathode is disclosed. The C4-E MILO has a primary slow wave structure which is comprised of four vanes and the four cavities located near a microwave exit end of the tube-like structure. The primary slow wave structure is the four cavity portion of the magnetically insulated line oscillator (MILO). An RF choke is provided which is comprised of three of the vanes and two of the cavities. The RF choke is located near a pulsed power source portion of the tube-like structure surrounding the cathode. The RF choke increases feedback in the primary slow wave structure, prevents microwaves generated in the primary slow wave structure from propagating towards the pulsed power source and modifies downstream electron current so as to enhance microwave power generation. A beam dump/extractor is located at the exit end of the oscillator tube for extracting microwave power from the oscillator, and in conjunction with an RF extractor vane, which comprises the fourth vane of the primary slow wave structure (nearest the exit) having a larger gap radius than the other vanes of the primary SWS, comprises an RF extractor. Uninsulated electron flow is returned downstream towards the exit along an anode/beam dump region located between the beam dump/extractor and the exit where the RF is radiated at said RF extractor vane located near the exit and the uninsulated electron flow is disposed at the beam dump/extractor. 34 figs.

Near field optical probe for critical dimension measurements

DOEpatents

Stallard, B.R.; Kaushik, S.

1999-05-18

A resonant planar optical waveguide probe for measuring critical dimensions on an object in the range of 100 nm and below is disclosed. The optical waveguide includes a central resonant cavity flanked by Bragg reflector layers with input and output means at either end. Light is supplied by a narrow bandwidth laser source. Light resonating in the cavity creates an evanescent electrical field. The object with the structures to be measured is translated past the resonant cavity. The refractive index contrasts presented by the structures perturb the field and cause variations in the intensity of the light in the cavity. The topography of the structures is determined from these variations. 8 figs.

Tree holes as larval habitats for Aedes aegypti in urban, suburban and forest habitats in a dengue affected area.

PubMed

Mangudo, C; Aparicio, J P; Gleiser, R M

2015-12-01

Aedes aegypti (L.) (Diptera: Culicidae), the main vector of dengue and urban yellow fever in the world, is highly adapted to the human environment. Artificial containers are the most common larval habitat for the species, but it may develop in tree holes and other phytotelmata. This study assessed whether tree holes in San Ramón de la Nueva Orán, a city located in subtropical montane moist forest where dengue outbreaks occur, are relevant as larval habitat for Ae. aegypti and if the species may be found in natural areas far from human habitations. Water holding tree holes were sampled during 3 years once a month along the rainy season using a siphon bottle, in urban and suburban sites within the city and in adjacent forested areas. Larvae and pupae were collected and the presence and volume of water in each tree hole were recorded. Finding Ae. aegypti in forested areas was an isolated event; however, the species was frequently collected from tree holes throughout the city and along the sampling period. Moreover, larvae were collected in considerably high numbers, stressing the importance of taking into account these natural cavities as potential reinfestation foci within dengue control framework.

A new method for spatial structure detection of complex inner cavities based on 3D γ-photon imaging

NASA Astrophysics Data System (ADS)

Xiao, Hui; Zhao, Min; Liu, Jiantang; Liu, Jiao; Chen, Hao

2018-05-01

This paper presents a new three-dimensional (3D) imaging method for detecting the spatial structure of a complex inner cavity based on positron annihilation and γ-photon detection. This method first marks carrier solution by a certain radionuclide and injects it into the inner cavity where positrons are generated. Subsequently, γ-photons are released from positron annihilation, and the γ-photon detector ring is used for recording the γ-photons. Finally, the two-dimensional (2D) image slices of the inner cavity are constructed by the ordered-subset expectation maximization scheme and the 2D image slices are merged to the 3D image of the inner cavity. To eliminate the artifact in the reconstructed image due to the scattered γ-photons, a novel angle-traversal model is proposed for γ-photon single-scattering correction, in which the path of the single scattered γ-photon is analyzed from a spatial geometry perspective. Two experiments are conducted to verify the effectiveness of the proposed correction model and the advantage of the proposed testing method in detecting the spatial structure of the inner cavity, including the distribution of gas-liquid multi-phase mixture inside the inner cavity. The above two experiments indicate the potential of the proposed method as a new tool for accurately delineating the inner structures of industrial complex parts.

A printable color filter based on the micro-cavity incorporating a nano-grating

NASA Astrophysics Data System (ADS)

Ye, Yan; Xu, Fengchuan; Wu, Shangliang; Wan, Wenqiang; Huang, Wenbin; Liu, Yanhua; Pu, Donglin; Wei, Guojun; Zhou, Yun; Wang, Yanyan; Qiao, Wen; Xu, Yishen; Chen, Linsen

2016-10-01

A printable color filter based on the photonic micro-cavity incorporating a nanostructure is proposed, which consists of a nano-metallic grating, a dielectric layer and aluminum (Al) film. According to the resonance induced by different dielectric depths of the micro-cavity, two dielectric heights for the same resonant wavelength are chosen to form the grating heights relative to the Al film. With the contribution of the cavity resonance and the surface plasmon resonance, the proposed structure performs enhanced broadband filtering characteristics with good angular tolerance up to 48° compared to the one of the micro-cavity as well as the one of the metallic grating. Therefore, reflective filters for RGB colors are designed incorporating the proposed structure. Furthermore, for the proposed structure shows great polarization dependence even at normal incidence, it can also be utilized as an anticounterfeiting certificate.

Asymmetric light transmission based on coupling between photonic crystal waveguides and L1/L3 cavity

NASA Astrophysics Data System (ADS)

Zhang, Jinqiannan; Chai, Hongyu; Yu, Zhongyuan; Cheng, Xiang; Ye, Han; Liu, Yumin

2017-09-01

A compact design of all-optical diode with mode conversion function based on a two-dimensional photonic crystal waveguide and an L1 or L3 cavity is theoretically investigated. The proposed photonic crystal structures comprise a triangular arrangement of air holes embedded in a silicon substrate. Asymmetric light propagation is achieved via the spatial mode match/mismatch in the coupling region. The simulations show that at each cavity's resonance frequency, the transmission efficiency of the structure with the L1 and L3 cavities reach 79% and 73%, while the corresponding unidirectionalities are 46 and 37 dB, respectively. The functional frequency can be controlled by simply adjusting the radii of specific air holes in the L1 and L3 cavities. The proposed structure can be used as a frequency filter, a beam splitter and has potential applications in all-optical integrated circuits.

Nanocrystal waveguide (NOW) laser

DOEpatents

Simpson, John T.; Simpson, Marcus L.; Withrow, Stephen P.; White, Clark W.; Jaiswal, Supriya L.

2005-02-08

A solid state laser includes an optical waveguide and a laser cavity including at least one subwavelength mirror disposed in or on the optical waveguide. A plurality of photoluminescent nanocrystals are disposed in the laser cavity. The reflective subwavelength mirror can be a pair of subwavelength resonant gratings (SWG), a pair of photonic crystal structures (PC), or a distributed feedback structure. In the case of a pair of mirrors, a PC which is substantially transmissive at an operating wavelength of the laser can be disposed in the laser cavity between the subwavelength mirrors to improve the mode structure, coherence and overall efficiency of the laser. A method for forming a solid state laser includes the steps of providing an optical waveguide, creating a laser cavity in the optical waveguide by disposing at least one subwavelength mirror on or in the waveguide, and positioning a plurality of photoluminescent nanocrystals in the laser cavity.

Neutron-detecting apparatuses and methods of fabrication

DOEpatents

Dahal, Rajendra P.; Huang, Jacky Kuan-Chih; Lu, James J. Q.; Danon, Yaron; Bhat, Ishwara B.

2015-10-06

Neutron-detecting structures and methods of fabrication are provided which include: a substrate with a plurality of cavities extending into the substrate from a surface; a p-n junction within the substrate and extending, at least in part, in spaced opposing relation to inner cavity walls of the substrate defining the plurality of cavities; and a neutron-responsive material disposed within the plurality of cavities. The neutron-responsive material is responsive to neutrons absorbed for releasing ionization radiation products, and the p-n junction within the substrate spaced in opposing relation to and extending, at least in part, along the inner cavity walls of the substrate reduces leakage current of the neutron-detecting structure.

Passive noise control by enhancing aeroacoustic interference due to structural discontinuities in close proximity

NASA Astrophysics Data System (ADS)

Leung, R. C. K.; So, R. M. C.; Tang, S. K.; Wang, X. Q.

2011-07-01

In-duct devices are commonly installed in flow ducts for various flow management purposes. The structural construction of these devices indispensably creates disruption to smooth flow through duct passages so they exist as structural discontinuities in duct flow. The presence of these discontinuities provides additional possibility of noise generation. In real practice, in-duct devices do not exist alone in any duct system. Even though each in-duct device would generate its own noise, it might be possible that these devices could be properly arranged so as to strengthen the interference between individual noise; thus giving rise to an overall reduction of noise radiation in the in-duct far field. This concept of passive noise control is investigated by considering different configurations of two structural discontinuities of simple form (i.e., a cavity) in tandem in an unconfined flow and in opposing setting within a flow duct. It is known that noise generated by a cavity in unconfined domain (unconfined cavity) is strongly dependent on flow-resonant behavior within the cavity so the interference it produces is merely aeroacoustic. The objective of the present study is to verify the concept of passive noise reduction through enhancement of aeroacoustic interference due to two cavities by considering laminar flow only. A two-dimensional approach is adopted for the direct aeroacoustic calculations using a direct numerical simulation (DNS) technique. The position and geometries of the cavities and the Mach number are varied; the resultant aeroacoustic behavior and acoustic power are calculated. The numerical results are compared with a single cavity case to highlight the effect of introducing additional cavities to the aeroacoustic problem. Resonant flow oscillations occur when two unconfined cavities are very close and the associated acoustic field is very intense with no noise reduction possible. However, for duct aeroacoustics, it is found that a 7.9 db reduction of acoustic power in the downstream side of the duct or a total reduction of ˜6 db is possible with opposing cavities having an offset of half a cavity length. In addition, the reduction is shown to be free from lock-on with trapped modes of the ducts with cavities.

Ratios of colony mass to thermal conductance of tree and man-made nest enclosures of Apis mellifera: implications for survival, clustering, humidity regulation and Varroa destructor

NASA Astrophysics Data System (ADS)

Mitchell, Derek

2016-05-01

In the absence of human intervention, the honeybee ( Apis mellifera L.) usually constructs its nest in a tree within a tall, narrow, thick-walled cavity high above the ground (the enclosure); however, most research and apiculture is conducted in the thin-walled, squat wooden enclosures we know as hives. This experimental research, using various hives and thermal models of trees, has found that the heat transfer rate is approximately four to seven times greater in the hives in common use, compared to a typical tree enclosure in winter configuration. This gives a ratio of colony mass to lumped enclosure thermal conductance (MCR) of less than 0.8 kgW-1 K for wooden hives and greater than 5 kgW-1 K for tree enclosures. This result for tree enclosures implies higher levels of humidity in the nest, increased survival of smaller colonies and lower Varroa destructor breeding success. Many honeybee behaviours previously thought to be intrinsic may only be a coping mechanism for human intervention; for example, at an MCR of above 2 kgW-1 K, clustering in a tree enclosure may be an optional, rare, heat conservation behaviour for established colonies, rather than the compulsory, frequent, life-saving behaviour that is in the hives in common use. The implied improved survival in hives with thermal properties of tree nests may help to solve some of the problems honeybees are currently facing in apiculture.

Trees and logs important to wildlife in the interior Columbia River basin.

Treesearch

Evelyn L. Bull; Catherine G. Parks; Torolf R. Torgersen

1997-01-01

This publication provides qualitative and quantitative information on five distinct structures: living trees with decayed parts, trees with hollow chambers, trees with brooms, dead trees, and logs. Information is provided on the value of these structures to wildlife, the decay or infection processes involved in the formation of these structures, and the principles to...

Structure-relaxation mechanism for the response of T4 lysozyme cavity mutants to hydrostatic pressure

PubMed Central

Lerch, Michael T.; López, Carlos J.; Yang, Zhongyu; Kreitman, Margaux J.; Horwitz, Joseph; Hubbell, Wayne L.

2015-01-01

Application of hydrostatic pressure shifts protein conformational equilibria in a direction to reduce the volume of the system. A current view is that the volume reduction is dominated by elimination of voids or cavities in the protein interior via cavity hydration, although an alternative mechanism wherein cavities are filled with protein side chains resulting from a structure relaxation has been suggested [López CJ, Yang Z, Altenbach C, Hubbell WL (2013) Proc Natl Acad Sci USA 110(46):E4306–E4315]. In the present study, mechanisms for elimination of cavities under high pressure are investigated in the L99A cavity mutant of T4 lysozyme and derivatives thereof using site-directed spin labeling, pressure-resolved double electron–electron resonance, and high-pressure circular dichroism spectroscopy. In the L99A mutant, the ground state is in equilibrium with an excited state of only ∼3% of the population in which the cavity is filled by a protein side chain [Bouvignies et al. (2011) Nature 477(7362):111–114]. The results of the present study show that in L99A the native ground state is the dominant conformation to pressures of 3 kbar, with cavity hydration apparently taking place in the range of 2–3 kbar. However, in the presence of additional mutations that lower the free energy of the excited state, pressure strongly populates the excited state, thereby eliminating the cavity with a native side chain rather than solvent. Thus, both cavity hydration and structure relaxation are mechanisms for cavity elimination under pressure, and which is dominant is determined by details of the energy landscape. PMID:25918400

Temperature and EUV Intensity in a Coronal Prominence Cavity and Streamer

NASA Technical Reports Server (NTRS)

Kucera, T. A.; Gibson, S.E.; Schmit, D. J.; Landi, E.; Tripathi, D.

2012-01-01

We analyze the temperature and EUV line emission of a coronal cavity and surrounding streamer in terms of a morphological forward model. We use a series of iron line ratios observed with the Hinode Extreme-ultraviolet Imaging Spectrograph (EIS) on 2007 Aug. 9 to constrain temperature as a function of altitude in a morphological forward model of the streamer and cavity. We also compare model prediction of the EIS EUV line intensities and polarized brightness (pB) data from the Mauna Loa Solar Observatory (MLSO) MK4. This work builds on earlier analysis using the same model to determine geometry of and density in the same cavity and streamer. The fit to the data with altitude dependent temperature profiles indicates that both the streamer and cavity have temperatures in the range 1.4-1.7 MK. However, the cavity exhibits substantial substructure such that the altitude dependent temperature profile is not sufficient to completely model conditions in the cavity. Coronal prominence cavities are structured by magnetism so clues to this structure are to be found in their plasma properties. These temperature substructures are likely related to structures in the cavity magnetic field. Furthermore, we find that the model overestimates the line intensities by a factor of 4-10, while overestimating pB data by no more than a factor of 1.4. One possible explanation for this is that there may be a significant amount of material at temperatures outside of the range log T(K) approximately equals 5.8 - 6.7 in both the cavity and the streamer.

Investigation of niobium surface structure and composition for improvement of superconducting radio-frequency cavities

NASA Astrophysics Data System (ADS)

Trenikhina, Yulia

Nano-scale investigation of intrinsic properties of niobium near-surface is a key to control performance of niobium superconducting radio-frequency cavities. Mechanisms responsible for the performance limitations and their empirical remedies needs to be justified in order to reproducibly control fabrication of SRF cavities with desired characteristics. The high field Q-slope and mechanism behind its cure (120°C mild bake) were investigated by comparison of the samples cut out of the cavities with high and low dissipation regions. Material evolution during mild field Q-slope nitrogen treatment was characterized using the coupon samples as well as samples cut out of nitrogen treated cavity. Evaluation of niobium near-surface state after some typical and novel cavity treatments was accomplished. Various TEM techniques, SEM, XPS, AES, XRD were used for the structural and chemical characterization of niobium near-surface. Combination of thermometry and structural temperature-dependent comparison of the cavity cutouts with different dissipation characteristics revealed precipitation of niobium hydrides to be the reason for medium and high field Q-slopes. Step-by-step effect of the nitrogen treatment processing on niobium surface was studied by analytical and structural characterization of the cavity cutout and niobium samples, which were subject to the treatment. Low concentration nitrogen doping is proposed to explain the benefit of nitrogen treatment. Chemical characterization of niobium samples before and after various surface processing (Electropolishing (EP), 800°C bake, hydrofluoric acid (HF) rinsing) showed the differences that can help to reveal the microscopic effects behind these treatments as well as possible sources of surface contamination.

Lifecycle of a large-scale polar coronal pseudostreamer/cavity system

NASA Astrophysics Data System (ADS)

Guennou, Chloé; Auchere, Frederic; Seaton, Daniel; Rachmeler, Laurel

2016-07-01

Coronal cavities, tunnel-like areas of rarefied density, provide important information about the magnetic structures that support prominences. The magnetic energy is stored through the twisted or shared magnetic field, ultimately released through Coronal Mass Ejections (CME). To be able to forecast these energetic releases of material and prevent potential terrestrial consequences, the understanding of the cavity 3D morphology, magnetic and thermal properties are essential. The prominences embedded in the cavity only trace a small part of the magnetic field, whereas the much larger cavity provides more information about the magnetic field morphology. As a result, a clear understanding of the coronal volume of the cavity significantly advances our understanding of both the pre-eruption equilibrium and the triggers of such eruptions. Determining both morphological and thermodynamical coronal structures is difficult due to the optically thin nature of the plasma. Observations are subject to integration along the line-of-sight (LOS). This effect can strongly complicate both the derivation and the interpretation of important physical quantities. One way to deduce the 3D structure is with Solar Rotational Tomography (SRT). The 3D plasma emissivity is estimated from EUV/white light images taken from different viewpoints. Physical properties can be then derived using Differential Emission Measure analysis from multi-wavelength 3D reconstructions. We applied this technique to an exceptional large-scale coronal pseudostreamer/cavity system in the southern polar region of the solar corona that was visible for approximately a year starting in February 2014. It is unusual to see such a large closed-field structure embedded within the open polar coronal hole. We investigate this structure to document its formation, evolution and eventually its shrinking process using data from both the PROBA2/SWAP and SDO/AIA EUV imagers. We found that the cavity temperature is extremely stable with time and is essentially at a similar or slightly hotter temperature than the surrounding pseudostreamer. Two regimes in cavity thermal properties were observed: during the first 5 months of observation, we found lower density depletion and highly multi-thermal plasma, while after the pseudostreamer became stable and slowly shrank, the depletion was more pronounced and the plasma was less multithermal. As the thermodynamic properties are strongly correlated with the magnetic structure, these results provide constraints on both the trigger of CMEs and the processes that maintain cavities stability for such a long lifetime.

Lattice Boltzmann simulation of immiscible displacement in the cavity with different channel configurations

NASA Astrophysics Data System (ADS)

Lou, Qin; Zang, Chenqiang; Yang, Mo; Xu, Hongtao

In this work, the immiscible displacement in a cavity with different channel configurations is studied using an improved pseudo-potential lattice Boltzmann equation (LBE) model. This model overcomes the drawback of the dependence of the fluid properties on the grid size, which exists in the original pseudo-potential LBE model. The approach is first validated by the Laplace law. Then, it is employed to study the immiscible displacement process. The influences of different factors, such as the surface wettability, the distance between the gas cavity and liquid cavity and the surface roughness of the channel are investigated. Numerical results show that the displacement efficiency increases and the displacement time decreases with the increase of the surface contact angle. On the other hand, the displacement efficiency increases with increasing distance between the gas cavity and the liquid cavity at first and finally reaches a constant value. As for the surface roughness, two structures (a semicircular cavity and a semicircular bulge) are studied. The comprehensive results show that although the displacement processes for both the structures depend on the surface wettability, they present quite different behaviors. Specially, for the roughness structure constituted by the semicircular cavity, the displacement efficiency decreases and displacement time increases evidently with the size of the semicircular cavity for the small contact angle. The trend slows down as the increase of the contact angle. Once the contact angle exceeds a certain value, the size of the semicircular cavity almost has no influence on the displacement process. While for the roughness structure of a semicircular bulge, the displacement efficiency increases with the size of bulge first and then it decreases for the small contact angle. The displacement efficiency increases first and finally reaches a constant for the large contact angle. The results also show that the displacement time has an extreme value in these cases for the small contact angles.

Effects of site on the demographics of standing dead trees in eastside pine forests

Treesearch

William F. Jr. Laudenslayer

2005-01-01

In the last several decades there has been a growing awareness of the value of snags in forests. Recent work has resulted in management standards and guidelines that set objectives for species such as cavity-nesting birds, but the numbers of snags required may not be attainable or sustainable across the landscape. Work reported here on snag demography in eastside pine...

Implementing the expanded prescribed fire program on the Gila National Forest, New Mexico: implications for snag management

Treesearch

Paul F. Boucher; William M. Block; Gary V. Benavidez; L. E. Wiebe

2000-01-01

Efforts to return natural fire to the Gila National Forest, New Mexico, have resulted in controversy regarding management of snags (standing dead trees). The importance of snags for wildlife, especially cavity-dependent birds, is well documented. Although general uses of snags by birds are known (nesting, roosting, perching, and foraging), we know little about the...

Success of intensive management of a critically imperiled population of red-cockaded woodpeckers in South Carolina

Treesearch

Kathleen E. Franzreb

1997-01-01

By late 1985, the population of Red-cockaded Woodpeckers (Picoider borealis) at the Savannah River Site, South Carolina, had declined to a low of four individuals. Because of extensive timber harvesting prior to thr 1950s,the older live pine trees that Red-cockaded Woodpeckers require for cavity construction were limited. We monitored the response of the population to...

Visual cues for woodpeckers: light reflectance of decayed wood varies by decay fungus

USGS Publications Warehouse

O'Daniels, Sean T.; Kesler, Dylan C.; Mihail, Jeanne D.; Webb, Elisabeth B.; Werner, Scott J.

2018-01-01

The appearance of wood substrates is likely relevant to bird species with life histories that require regular interactions with wood for food and shelter. Woodpeckers detect decayed wood for cavity placement or foraging, and some species may be capable of detecting trees decayed by specific fungi; however, a mechanism allowing for such specificity remains unidentified. We hypothesized that decay fungi associated with woodpecker cavity sites alter the substrate reflectance in a species-specific manner that is visually discriminable by woodpeckers. We grew 10 species of wood decay fungi from pure cultures on sterile wood substrates of 3 tree species. We then measured the relative reflectance spectra of decayed and control wood wafers and compared them using the receptor noise-limited (RNL) color discrimination model. The RNL model has been used in studies of feather coloration, egg shells, flowers, and fruit to model how the colors of objects appear to birds. Our analyses indicated 6 of 10 decayed substrate/control comparisons were above the threshold of discrimination (i.e., indicating differences discriminable by avian viewers), and 12 of 13 decayed substrate comparisons were also above threshold for a hypothetical woodpecker. We conclude that woodpeckers should be capable of visually detecting decayed wood on trees where bark is absent, and they should also be able to detect visually species-specific differences in wood substrates decayed by fungi used in this study. Our results provide evidence for a visual mechanism by which woodpeckers could identify and select substrates decayed by specific fungi, which has implications for understanding ecologically important woodpecker–fungus interactions.

Mapping of Ligand-Binding Cavities in Proteins

PubMed Central

Andersson, C. David; Chen, Brian Y.; Linusson, Anna

2010-01-01

The complex interactions between proteins and small organic molecules (ligands) are intensively studied because they play key roles in biological processes and drug activities. Here, we present a novel approach to characterise and map the ligand-binding cavities of proteins without direct geometric comparison of structures, based on Principal Component Analysis of cavity properties (related mainly to size, polarity and charge). This approach can provide valuable information on the similarities, and dissimilarities, of binding cavities due to mutations, between-species differences and flexibility upon ligand-binding. The presented results show that information on ligand-binding cavity variations can complement information on protein similarity obtained from sequence comparisons. The predictive aspect of the method is exemplified by successful predictions of serine proteases that were not included in the model construction. The presented strategy to compare ligand-binding cavities of related and unrelated proteins has many potential applications within protein and medicinal chemistry, for example in the characterisation and mapping of “orphan structures”, selection of protein structures for docking studies in structure-based design and identification of proteins for selectivity screens in drug design programs. PMID:20034113

Sound transmission of cavity walls due to structure borne transmission via point and line connections.

PubMed

Davy, John L

2012-08-01

The author has published equations for predicting the air borne sound transmission of double leaf cavity walls due to the structure borne sound transmission across the air cavity via (possibly resilient) line connections, but has never published the full derivation of these equations. The author also derived equations for the case when the connections are rigid point connections but has never used them or published them or their derivations. This paper will present the full derivation of the author's theory of the air borne sound transmission of double leaf cavity walls due to the structure borne sound transmission across the air cavity via point or line connections which are modeled as four pole networks. The theoretical results will be compared with experimental results on wooden stud cavity walls from the National Research Council of Canada because the screw spacing is given for these results. This enables connections via studs and screws to be modeled as point connections and avoids the need to make any assumptions about the compliance of the equivalent point or line connections.

All-optical diode structure based on asymmetrical coupling by a micro-cavity and FP cavity at two sides of photonic crystal waveguide

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Bin, E-mail: liubin-d@126.com; Liu, Yun-Feng; He, Xing-Dao

2016-06-15

A high efficiency all-optical diode based on photonic crystal (PC) waveguide has been proposed and numerically investigated by finite-difference time-domain (FDTD) method. The structure is asymmetrically coupled by a micro-cavity containing nonlinear Kerr medium and a FP cavity at sides of PC waveguide. Because of interference between two cavities, Fano peak and FP peak can both appear in transmission spectra and unidirectional transmission can be achieved. The working wavelength can set between two peaks and near to the Fano peak. For forward launch with suitable light intensity, nonlinear Kerr effect of micro-cavity can been excited. It will result in redmore » shift of Fano peak and achieving forward transmission. But for backward launch, a stronger incidence light is needed to the excite Kerr effect due to the design of asymmetric structure. This design has many advantages, including high maximum transmittance, high transmittance contrast ratio, low power threshold, short response time, and ease of integration.« less

Large-Eddy Simulation of Coherent Flow Structures within a Cubical Canopy

NASA Astrophysics Data System (ADS)

Inagaki, Atsushi; Castillo, Marieta Cristina L.; Yamashita, Yoshimi; Kanda, Manabu; Takimoto, Hiroshi

2012-02-01

Instantaneous flow structures "within" a cubical canopy are investigated via large-eddy simulation. The main topics of interest are, (1) large-scale coherent flow structures within a cubical canopy, (2) how the structures are coupled with the turbulent organized structures (TOS) above them, and (3) the classification and quantification of representative instantaneous flow patterns within a street canyon in relation to the coherent structures. We use a large numerical domain (2,560 m × 2,560 m × 1,710 m) with a fine spatial resolution (2.5 m), thereby simulating a complete daytime atmospheric boundary layer (ABL), as well as explicitly resolving a regular array of cubes (40 m in height) at the surface. A typical urban ABL is numerically modelled. In this situation, the constant heat supply from roof and floor surfaces sustains a convective mixed layer as a whole, but strong wind shear near the canopy top maintains the surface layer nearly neutral. The results reveal large coherent structures in both the velocity and temperature fields "within" the canopy layer. These structures are much larger than the cubes, and their shapes and locations are shown to be closely related to the TOS above them. We classify the instantaneous flow patterns in a cavity, specifically focusing on two characteristic flow patterns: flushing and cavity-eddy events. Flushing indicates a strong upward motion, while a cavity eddy is characterized by a dominant vortical motion within a single cavity. Flushing is clearly correlated with the TOS above, occurring frequently beneath low-momentum streaks. The instantaneous momentum and heat transport within and above a cavity due to flushing and cavity-eddy events are also quantified.

Delivery Path Length and Holding Tree Minimization Method of Securities Delivery among the Registration Agencies Connected as Non-Tree

NASA Astrophysics Data System (ADS)

Shimamura, Atsushi; Moritsu, Toshiyuki; Someya, Harushi

To dematerialize the securities such as stocks or cooporate bonds, the securities were registered to account in the registration agencies which were connected as tree. This tree structure had the advantage in the management of the securities those were issued large amount and number of brands of securities were limited. But when the securities such as account receivables or advance notes are dematerialized, number of brands of the securities increases extremely. In this case, the management of securities with tree structure becomes very difficult because of the concentration of information to root of the tree. To resolve this problem, using the graph structure is assumed instead of the tree structure. When the securities are kept with tree structure, the delivery path of securities is unique, but when securities are kept with graph structure, path of delivery is not unique. In this report, we describe the requirement of the delivery path of securities, and we describe selecting method of the path.

A SOLAR TORNADO OBSERVED BY AIA/SDO: ROTATIONAL FLOW AND EVOLUTION OF MAGNETIC HELICITY IN A PROMINENCE AND CAVITY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Xing; Morgan, Huw; Leonard, Drew

During 2011 September 24, as observed by the Atmospheric Imaging Assembly instrument of the Solar Dynamic Observatory and ground-based H{alpha} telescopes, a prominence and associated cavity appeared above the southwest limb. On 2011 September 25 8:00 UT, material flows upward from the prominence core along a narrow loop-like structure, accompanied by a rise ({>=}50,000 km) of the prominence core and the loop. As the loop fades by 10:00, small blobs and streaks of varying brightness rotate around the top part of the prominence and cavity, mimicking a cyclone. The most intense and coherent rotation lasts for over three hours, withmore » emission in both hot ({approx}1 MK) and cold (hydrogen and helium) lines. We suggest that the cyclonic appearance and overall evolution of the structure can be interpreted in terms of the expansion of helical structures into the cavity, and the movement of plasma along helical structures which appears as a rotation when viewed along the helix axis. The coordinated movement of material between prominence and cavity suggests that they are structurally linked. Complexity is great due to the combined effect of these actions and the line-of-sight integration through the structure which contains tangled fields.« less

Microcavity morphology optimization

NASA Astrophysics Data System (ADS)

Ferdous, Fahmida; Demchenko, Alena A.; Vyatchanin, Sergey P.; Matsko, Andrey B.; Maleki, Lute

2014-09-01

High spectral mode density of conventional optical cavities is detrimental to the generation of broad optical frequency combs and to other linear and nonlinear applications. In this work we optimize the morphology of high-Q whispering gallery (WG) and Fabry-Perot (FP) cavities and find a set of parameters that allows treating them, essentially, as single-mode structures, thus removing limitations associated with a high density of cavity mode spectra. We show that both single-mode WGs and single-mode FP cavities have similar physical properties, in spite of their different loss mechanisms. The morphology optimization does not lead to a reduction of quality factors of modes belonging to the basic family. We study the parameter space numerically and find the region where the highest possible Q factor of the cavity modes can be realized while just having a single bound state in the cavity. The value of the Q factor is comparable with that achieved in conventional cavities. The proposed cavity structures will be beneficial for generation of octave spanning coherent frequency combs and will prevent undesirable effects of parametric instability in laser gravitational wave detectors.

Acoustoelasticity. [sound-structure interaction

NASA Technical Reports Server (NTRS)

Dowell, E. H.

1977-01-01

Sound or pressure variations inside bounded enclosures are investigated. Mathematical models are given for determining: (1) the interaction between the sound pressure field and the flexible wall of a Helmholtz resonator; (2) coupled fluid-structural motion of an acoustic cavity with a flexible and/or absorbing wall; (3) acoustic natural modes in multiple connected cavities; and (4) the forced response of a cavity with a flexible and/or absorbing wall. Numerical results are discussed.

Cavity-assisted emission of polarization-entangled photons from biexcitons in quantum dots with fine-structure splitting.

PubMed

Schumacher, Stefan; Förstner, Jens; Zrenner, Artur; Florian, Matthias; Gies, Christopher; Gartner, Paul; Jahnke, Frank

2012-02-27

We study the quantum properties and statistics of photons emitted by a quantum-dot biexciton inside a cavity. In the biexciton-exciton cascade, fine-structure splitting between exciton levels degrades polarization-entanglement for the emitted pair of photons. However, here we show that the polarization-entanglement can be preserved in such a system through simultaneous emission of two degenerate photons into cavity modes tuned to half the biexciton energy. Based on detailed theoretical calculations for realistic quantum-dot and cavity parameters, we quantify the degree of achievable entanglement.

Pyrolyzed thin film carbon

NASA Technical Reports Server (NTRS)

Harder, Theodore (Inventor); Konishi, Satoshi (Inventor); Miserendino, Scott (Inventor); Tai, Yu-Chong (Inventor); Liger, Matthieu (Inventor)

2010-01-01

A method of making carbon thin films comprises depositing a catalyst on a substrate, depositing a hydrocarbon in contact with the catalyst and pyrolyzing the hydrocarbon. A method of controlling a carbon thin film density comprises etching a cavity into a substrate, depositing a hydrocarbon into the cavity, and pyrolyzing the hydrocarbon while in the cavity to form a carbon thin film. Controlling a carbon thin film density is achieved by changing the volume of the cavity. Methods of making carbon containing patterned structures are also provided. Carbon thin films and carbon containing patterned structures can be used in NEMS, MEMS, liquid chromatography, and sensor devices.

Reducing flow-induced resonance in a cavity

NASA Technical Reports Server (NTRS)

Cattafesta, III, Louis N. (Inventor); Wlezien, Richard W. (Inventor); Won, Chin C. (Inventor); Garg, Sanjay (Inventor)

1998-01-01

A method and system are provided for reducing flow-induced resonance in a structure's cavity. A time-varying disturbance is introduced into the flow along a leading edge of the cavity. The time-varying disturbance can be periodic and can have the same or different frequency of the natural resonant frequency of the cavity. In one embodiment of the system, flaps are mounted flush with the surface of the structure along the cavity's leading edge. A piezoelectric actuator is coupled to each flap and causes a portion of each flap to oscillate into and out of the flow in accordance with the time-varying function. Resonance reduction can be achieved with both open-loop and closed-loop configurations of the system.

The neglected bee trees: European beech forests as a home for feral honey bee colonies

PubMed Central

2018-01-01

It is a common belief that feral honey bee colonies (Apis mellifera L.) were eradicated in Europe through the loss of habitats, domestication by man and spread of pathogens and parasites. Interestingly, no scientific data are available, neither about the past nor the present status of naturally nesting honeybee colonies. We expected near-natural beech (Fagus sylvatica L.) forests to provide enough suitable nest sites to be a home for feral honey bee colonies in Europe. Here, we made a first assessment of their occurrence and density in two German woodland areas based on two methods, the tracing of nest sites based on forager flight routes (beelining technique), and the direct inspection of potential cavity trees. Further, we established experimental swarms at forest edges and decoded dances for nest sites performed by scout bees in order to study how far swarms from beekeeper-managed hives would potentially move into a forest. We found that feral honey bee colonies regularly inhabit tree cavities in near-natural beech forests at densities of at least 0.11–0.14 colonies/km2. Colonies were not confined to the forest edges; they were also living deep inside the forests. We estimated a median distance of 2,600 m from the bee trees to the next apiaries, while scout bees in experimental swarms communicated nest sites in close distances (median: 470 m). We extrapolate that there are several thousand feral honey bee colonies in German woodlands. These have to be taken in account when assessing the role of forest areas in providing pollination services to the surrounding land, and their occurrence has implications for the species’ perception among researchers, beekeepers and conservationists. This study provides a starting point for investigating the life-histories and the ecological interactions of honey bees in temperate European forest environments. PMID:29637025

The neglected bee trees: European beech forests as a home for feral honey bee colonies.

PubMed

Kohl, Patrick Laurenz; Rutschmann, Benjamin

2018-01-01

It is a common belief that feral honey bee colonies ( Apis mellifera L.) were eradicated in Europe through the loss of habitats, domestication by man and spread of pathogens and parasites. Interestingly, no scientific data are available, neither about the past nor the present status of naturally nesting honeybee colonies. We expected near-natural beech ( Fagus sylvatica L.) forests to provide enough suitable nest sites to be a home for feral honey bee colonies in Europe. Here, we made a first assessment of their occurrence and density in two German woodland areas based on two methods, the tracing of nest sites based on forager flight routes (beelining technique), and the direct inspection of potential cavity trees. Further, we established experimental swarms at forest edges and decoded dances for nest sites performed by scout bees in order to study how far swarms from beekeeper-managed hives would potentially move into a forest. We found that feral honey bee colonies regularly inhabit tree cavities in near-natural beech forests at densities of at least 0.11-0.14 colonies/km 2 . Colonies were not confined to the forest edges; they were also living deep inside the forests. We estimated a median distance of 2,600 m from the bee trees to the next apiaries, while scout bees in experimental swarms communicated nest sites in close distances (median: 470 m). We extrapolate that there are several thousand feral honey bee colonies in German woodlands. These have to be taken in account when assessing the role of forest areas in providing pollination services to the surrounding land, and their occurrence has implications for the species' perception among researchers, beekeepers and conservationists. This study provides a starting point for investigating the life-histories and the ecological interactions of honey bees in temperate European forest environments.

The Connection Between Solar Coronal Cavities and Solar Filaments

NASA Astrophysics Data System (ADS)

Zawadzki, B.; Karna, N.; Prchlik, J.; Reeves, K.; Kempton, D.; Angryk, R.

2017-12-01

Filaments are structures in the solar corona made up of relatively cool, dense, partially ionized plasma. Coronal cavities, circular or elliptical regions of low plasma density, are observed above prominences on the solar limb when viewed in EUV and white light coronal images. Since most filament/cavity eruptions lead to a coronal mass ejection (CME), determining the likelihood of an eruption event will improve our ability to predict space weather. We examine SDO/AIA cavity metadata and HEK filament metadata to determine which cavities are associated with which filaments from 2012 to 2015. Our study involved 140 cavities and 368 filaments that appeared poleward of +-30 degrees. We categorized the cavities and filaments based on the stability of the structures, defined by whether or not the cavity and filament exist long enough to track fully across the solar disk. Using these categories we perform a statistical study on various filament qualities within the metadata. Our findings indicate that filaments with cavities are observed more often at high latitude in compared to filaments without cavities. Moreover, our study indicates that a statistically significant difference exists between the filament length and tilt distributions for certain categories. This work supported by the NSF-REU solar physics program at SAO, grant number AGS-1560313, and the NSF-DIBBS project, grant number ACI-1443061.

Ecological consequences of mountain pine beetle outbreaks for wildlife in western North American forests

USGS Publications Warehouse

Saab, Victoria A.; Latif, Quresh S.; Rowland, Mary M.; Johnson, Tracey N.; Chalfoun, Anna D.; Buskirk, Steven W.; Heyward, Joslin E.; Dresser, Matthew A.

2014-01-01

Mountain pine beetle (Dendroctonus ponderosae) (MPB) outbreaks are increasingly prevalent in western North America, causing considerable ecological change in pine (Pinus spp.) forests with important implications for wildlife. We reviewed studies examining wildlife responses to MPB outbreaks and postoutbreak salvage logging to inform forest management and guide future research. Our review included 16 studies describing MPB outbreak relationships with 89 bird species and 6 studies describing relationships with 11 mammalian species, but no studies of reptiles or amphibians. We included studies that compared wildlife response metrics temporally (before versus after the outbreak) and spatially (across sites that varied in severity of outbreak) in relation to beetle outbreaks. Outbreaks ranged in size from 20,600 to ≥107 ha and studies occurred 1‐30 years after the peak MPB outbreak, but most studies were conducted over the short-term (i.e., ≤6 years after the peak of MPB-induced tree mortality). Birds were the only taxa studied frequently; however, high variability existed among those studies to allow many inferences, although some patterns were evident. Avian studies concluded that cavity-nesting species responded more favorably to beetle-killed forests than species with open-cup nests, and species nesting in the shrub layer favored outbreak forests compared with ground and open-cup canopy nesters that generally showed mixed relationships. Bark-drilling species as a group clearly demonstrated a positive short-term association with MPB epidemics compared with that of other foraging assemblages. Cavity-nesting birds that do not consume bark beetles (i.e., secondary cavity-nesting species and nonbark-drilling woodpeckers) also exhibited some positive responses to MPB outbreaks, although not as pronounced or consistent as those of bark-drilling woodpeckers. Mammalian responses to MPB outbreaks were mixed. Studies consistently reported negative effects of MPB outbreaks on red squirrels (Tamiasciurus hudsonicus). However, there is evidence that red squirrels can persist after an outbreak under some conditions, e.g., when nonhost tree species are present. For small mammal species associated with forest understories, responses may be most pronounced during the postepidemic period (>6 years after the peak of beetle-induced tree mortality) when snags fall to produce coarse woody debris. Postoutbreak salvage logging studies (n = 6) reported results that lacked consensus. Postoutbreak salvage logging may have an impact on fewer wildlife species than postfire salvage logging, probably because only host-specific tree species are removed after beetle outbreaks.

Design and fabrication of plasmonic cavities for magneto-optical sensing

NASA Astrophysics Data System (ADS)

Loughran, T. H. J.; Roth, J.; Keatley, P. S.; Hendry, E.; Barnes, W. L.; Hicken, R. J.; Einsle, J. F.; Amy, A.; Hendren, W.; Bowman, R. M.; Dawson, P.

2018-05-01

The design and fabrication of a novel plasmonic cavity, intended to allow far-field recovery of signals arising from near field magneto-optical interactions, is presented. Finite element modeling is used to describe the interaction between a gold film, containing cross-shaped cavities, with a nearby magnetic under-layer. The modeling revealed strong electric field confinement near the center of the cross structure for certain optical wavelengths, which may be tuned by varying the length of the cross through a range that is compatible with available fabrication techniques. Furthermore, the magneto optical Kerr effect (MOKE) response of the composite structure can be enhanced with respect to that of the bare magnetic film. To confirm these findings, cavities were milled within gold films deposited upon a soluble film, allowing relocation to a ferromagnetic film using a float transfer technique. Cross cavity arrays were fabricated and characterized by optical transmission spectroscopy prior to floating, revealing resonances at optical wavelengths in good agreement with the finite element modeling. Following transfer to the magnetic film, circular test apertures within the gold film yielded clear magneto-optical signals even for diameters within the sub-wavelength regime. However, no magneto-optical signal was observed for the cross cavity arrays, since the FIB milling process was found to produce nanotube structures within the soluble under-layer that adhered to the gold. Further optimization of the fabrication process should allow recovery of magneto-optical signal from cross cavity structures.

Tapered optical fiber tip probes based on focused ion beam-milled Fabry-Perot microcavities

NASA Astrophysics Data System (ADS)

André, Ricardo M.; Warren-Smith, Stephen C.; Becker, Martin; Dellith, Jan; Rothhardt, Manfred; Zibaii, M. I.; Latifi, H.; Marques, Manuel B.; Bartelt, Hartmut; Frazão, Orlando

2016-09-01

Focused ion beam technology is combined with dynamic chemical etching to create microcavities in tapered optical fiber tips, resulting in fiber probes for temperature and refractive index sensing. Dynamic chemical etching uses hydrofluoric acid and a syringe pump to etch standard optical fibers into cone structures called tapered fiber tips where the length, shape, and cone angle can be precisely controlled. On these tips, focused ion beam is used to mill several different types of Fabry-Perot microcavities. Two main cavity types are initially compared and then combined to form a third, complex cavity structure. In the first case, a gap is milled on the tapered fiber tip which allows the external medium to penetrate the light guiding region and thus presents sensitivity to external refractive index changes. In the second, two slots that function as mirrors are milled on the tip creating a silica cavity that is only sensitive to temperature changes. Finally, both cavities are combined on a single tapered fiber tip, resulting in a multi-cavity structure capable of discriminating between temperature and refractive index variations. This dual characterization is performed with the aid of a fast Fourier transform method to separate the contributions of each cavity and thus of temperature and refractive index. Ultimately, a tapered optical fiber tip probe with sub-standard dimensions containing a multi-cavity structure is projected, fabricated, characterized and applied as a sensing element for simultaneous temperature and refractive index discrimination.

Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin

PubMed Central

Tomita, Ayana; Sato, Tokushi; Ichiyanagi, Kouhei; Nozawa, Shunsuke; Ichikawa, Hirohiko; Chollet, Matthieu; Kawai, Fumihiro; Park, Sam-Yong; Tsuduki, Takayuki; Yamato, Takahisa; Koshihara, Shin-ya; Adachi, Shin-ichi

2009-01-01

Proteins harbor a number of cavities of relatively small volume. Although these packing defects are associated with the thermodynamic instability of the proteins, the cavities also play specific roles in controlling protein functions, e.g., ligand migration and binding. This issue has been extensively studied in a well-known protein, myoglobin (Mb). Mb reversibly binds gas ligands at the heme site buried in the protein matrix and possesses several internal cavities in which ligand molecules can reside. It is still an open question as to how a ligand finds its migration pathways between the internal cavities. Here, we report on the dynamic and sequential structural deformation of internal cavities during the ligand migration process in Mb. Our method, the continuous illumination of native carbonmonoxy Mb crystals with pulsed laser at cryogenic temperatures, has revealed that the migration of the CO molecule into each cavity induces structural changes of the amino acid residues around the cavity, which results in the expansion of the cavity with a breathing motion. The sequential motion of the ligand and the cavity suggests a self-opening mechanism of the ligand migration channel arising by induced fit, which is further supported by computational geometry analysis by the Delaunay tessellation method. This result suggests a crucial role of the breathing motion of internal cavities as a general mechanism of ligand migration in a protein matrix. PMID:19204297

Nanostructural features degrading the performance of superconducting radio frequency niobium cavities revealed by transmission electron microscopy and electron energy loss spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trenikhina, Y.; Romanenko, A.; Kwon, J.

Nanoscale defect structure within the magnetic penetration depth of ~100 nm is key to the performance limitations of niobium superconducting radio frequency cavities. Using a unique combination of advanced thermometry during cavity RF measurements, and TEM structural and compositional characterization of the samples extracted from cavity walls, we discover the existence of nanoscale hydrides in electropolished cavities limited by the high field Q slope, and show the decreased hydride formation in the electropolished cavity after 120°C baking. Furthermore, we demonstrate that adding 800°C hydrogen degassing followed by light buffered chemical polishing restores the hydride formation to the pre-120°C bake level.more » We also show absence of niobium oxides along the grain boundaries and the modifications of the surface oxide upon 120°C bake.« less

Nanostructural features degrading the performance of superconducting radio frequency niobium cavities revealed by transmission electron microscopy and electron energy loss spectroscopy

DOE PAGES

Trenikhina, Y.; Romanenko, A.; Kwon, J.; ...

2015-04-21

Nanoscale defect structure within the magnetic penetration depth of ~100 nm is key to the performance limitations of niobium superconducting radio frequency cavities. Using a unique combination of advanced thermometry during cavity RF measurements, and TEM structural and compositional characterization of the samples extracted from cavity walls, we discover the existence of nanoscale hydrides in electropolished cavities limited by the high field Q slope, and show the decreased hydride formation in the electropolished cavity after 120°C baking. Furthermore, we demonstrate that adding 800°C hydrogen degassing followed by light buffered chemical polishing restores the hydride formation to the pre-120°C bake level.more » We also show absence of niobium oxides along the grain boundaries and the modifications of the surface oxide upon 120°C bake.« less

Nanostructural features degrading the performance of superconducting radio frequency niobium cavities revealed by transmission electron microscopy and electron energy loss spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trenikhina, Y., E-mail: yuliatr@fnal.gov; Fermi National Accelerator Laboratory, Batavia, Illinois 60510; Romanenko, A., E-mail: aroman@fnal.gov

Nanoscale defect structure within the magnetic penetration depth of ∼100 nm is key to the performance limitations of niobium superconducting radio frequency cavities. Using a unique combination of advanced thermometry during cavity RF measurements, and TEM structural and compositional characterization of the samples extracted from cavity walls, we discover the existence of nanoscale hydrides in electropolished cavities limited by the high field Q slope, and show the decreased hydride formation in the electropolished cavity after 120 °C baking. Furthermore, we demonstrate that adding 800 °C hydrogen degassing followed by light buffered chemical polishing restores the hydride formation to the pre-120 °C bake level. Wemore » also show absence of niobium oxides along the grain boundaries and the modifications of the surface oxide upon 120 °C bake.« less

Design of 6 MeV X-band electron linac for dual-head gantry radiotherapy system

NASA Astrophysics Data System (ADS)

Shin, Seung-wook; Lee, Seung-Hyun; Lee, Jong-Chul; Kim, Huisu; Ha, Donghyup; Ghergherehchi, Mitra; Chai, Jongseo; Lee, Byung-no; Chae, Moonsik

2017-12-01

A compact 6 MeV electron linac is being developed at Sungkyunkwan University, in collaboration with the Korea atomic energy research institute (KAERI). The linac will be used as an X-ray source for a dual-head gantry radiotherapy system. X-band technology has been employed to satisfy the size requirement of the dual-head gantry radiotherapy machine. Among the several options available, we selected a pi/2-mode, standing-wave, side-coupled cavity. This choice of radiofrequency (RF) cavity design is intended to enhance the shunt impedance of each cavity in the linac. An optimum structure of the RF cavity with a high-performance design was determined by applying a genetic algorithm during the optimization procedure. This paper describes the detailed design process for a single normal RF cavity and the entire structure, including the RF power coupler and coupling cavity, as well as the beam dynamics results.

High efficiency all-optical plasmonic diode based on a nonlinear side-coupled waveguide-cavity structure with broken symmetry

NASA Astrophysics Data System (ADS)

Liang, Hong-Qin; Liu, Bin; Hu, Jin-Feng; He, Xing-Dao

2018-05-01

An all-optical plasmonic diode, comprising a metal-insulator-metal waveguide coupled with a stub cavity, is proposed based on a nonlinear Fano structure. The key technique used is to break structural spatial symmetry by a simple reflector layer in the waveguide. The spatial asymmetry of the structure gives rise to the nonreciprocity of coupling efficiencies between the Fano cavity and waveguides on both sides of the reflector layer, leading to a nonreciprocal nonlinear response. Transmission properties and dynamic responses are numerically simulated and investigated by the nonlinear finite-difference time-domain method. In the proposed structure, high-efficiency nonreciprocal transmission can be achieved with a low power threshold and an ultrafast response time (subpicosecond level). A high maximum transmittance of 89.3% and an ultra-high transmission contrast ratio of 99.6% can also be obtained. The device can be flexibly adjusted for working wavebands by altering the stub cavity length.

Global tree network for computing structures enabling global processing operations

DOEpatents

Blumrich; Matthias A.; Chen, Dong; Coteus, Paul W.; Gara, Alan G.; Giampapa, Mark E.; Heidelberger, Philip; Hoenicke, Dirk; Steinmacher-Burow, Burkhard D.; Takken, Todd E.; Vranas, Pavlos M.

2010-01-19

A system and method for enabling high-speed, low-latency global tree network communications among processing nodes interconnected according to a tree network structure. The global tree network enables collective reduction operations to be performed during parallel algorithm operations executing in a computer structure having a plurality of the interconnected processing nodes. Router devices are included that interconnect the nodes of the tree via links to facilitate performance of low-latency global processing operations at nodes of the virtual tree and sub-tree structures. The global operations performed include one or more of: broadcast operations downstream from a root node to leaf nodes of a virtual tree, reduction operations upstream from leaf nodes to the root node in the virtual tree, and point-to-point message passing from any node to the root node. The global tree network is configurable to provide global barrier and interrupt functionality in asynchronous or synchronized manner, and, is physically and logically partitionable.

Virtual sensors for active noise control in acoustic-structural coupled enclosures using structural sensing: part II--Optimization of structural sensor placement.

PubMed

Halim, Dunant; Cheng, Li; Su, Zhongqing

2011-04-01

The work proposed an optimization approach for structural sensor placement to improve the performance of vibro-acoustic virtual sensor for active noise control applications. The vibro-acoustic virtual sensor was designed to estimate the interior sound pressure of an acoustic-structural coupled enclosure using structural sensors. A spectral-spatial performance metric was proposed, which was used to quantify the averaged structural sensor output energy of a vibro-acoustic system excited by a spatially varying point source. It was shown that (i) the overall virtual sensing error energy was contributed additively by the modal virtual sensing error and the measurement noise energy; (ii) each of the modal virtual sensing error system was contributed by both the modal observability levels for the structural sensing and the target acoustic virtual sensing; and further (iii) the strength of each modal observability level was influenced by the modal coupling and resonance frequencies of the associated uncoupled structural/cavity modes. An optimal design of structural sensor placement was proposed to achieve sufficiently high modal observability levels for certain important panel- and cavity-controlled modes. Numerical analysis on a panel-cavity system demonstrated the importance of structural sensor placement on virtual sensing and active noise control performance, particularly for cavity-controlled modes.

Extreme diffusion limited electropolishing of niobium radiofrequency cavities

DOE PAGES

Crawford, Anthony C.

2017-01-04

In this study, a deeply modulated, regular, continuous, oscillating current waveform is reliably and repeatably achieved during electropolishing of niobium single-cell elliptical radiofrequency cavities. Details of the technique and cavity test results are reported here. The method is applicable for cavity frequencies in the range 500 MHz to 3.9 GHz and can be extended to multicell structures.

The Three-part Structure of a Filament-unrelated Solar Coronal Mass Ejection

NASA Astrophysics Data System (ADS)

Song, H. Q.; Cheng, X.; Chen, Y.; Zhang, J.; Wang, B.; Li, L. P.; Li, B.; Hu, Q.; Li, G.

2017-10-01

Coronal mass ejections (CMEs) often exhibit the typical three-part structure in the corona when observed with white-light coronagraphs, I.e., the bright leading front, dark cavity, and bright core, corresponding to a high-low-high density sequence. As CMEs result from eruptions of magnetic flux ropes (MFRs), which can possess either lower (e.g., coronal-cavity MFRs) or higher (e.g., hot-channel MFRs) density compared to their surroundings in the corona, the traditional opinion regards the three-part structure as the manifestations of coronal plasma pileup (high density), coronal-cavity MFR (low density), and filament (high density) contained in the trailing part of MFR, respectively. In this paper, we demonstrate that filament-unrelated CMEs can also exhibit the classical three-part structure. The observations were made from different perspectives through an event that occurred on 2011 October 4. The CME cavity corresponds to the low-density zone between the leading front and the high-density core, and it is obvious in the low corona and gradually becomes fuzzy when propagating outward. The bright core corresponds to a high-density structure that is suggested to be an erupting MFR. The MFR is recorded from both edge-on and face-on perspectives, exhibiting different morphologies that are due to projection effects. We stress that the zone (MFR) with lower (higher) density in comparison to the surroundings can appear as the dark cavity (bright core) when observed through white-light coronagraphs, which is not necessarily the coronal-cavity MFR (erupted filament).

Relationships Between Habitat and Snag Characteristics and the Reproductive Success of the Brown-headed Nuthatch (Sitta pusilla) in Eastern Texas

Treesearch

L. Lynnette Dornak; D. Brent Burt; Dean W. Coble; Richard N. Conner

2004-01-01

Habitat use and reproductive success of the Brown-headed Nuthatch (Sitta pusilla Latham) were studied in East Texas during the 2001­2002 breed- ing seasons. We compared nest cavity selection at used and randomly selected non-used areas. Height of nest trees, midstory density, and percent leaf litter were negatively correlated with nest site selection...

Quantum computation with classical light: Implementation of the Deutsch-Jozsa algorithm

NASA Astrophysics Data System (ADS)

Perez-Garcia, Benjamin; McLaren, Melanie; Goyal, Sandeep K.; Hernandez-Aranda, Raul I.; Forbes, Andrew; Konrad, Thomas

2016-05-01

We propose an optical implementation of the Deutsch-Jozsa Algorithm using classical light in a binary decision-tree scheme. Our approach uses a ring cavity and linear optical devices in order to efficiently query the oracle functional values. In addition, we take advantage of the intrinsic Fourier transforming properties of a lens to read out whether the function given by the oracle is balanced or constant.

Barred Owl Nest in a Natural Hole in an Earthen Bank in Eastern Texas

Treesearch

Clififord E. Shackelford

1996-01-01

The barred owl (Strix varia) typically nests in old stick nests constructed by hawks, crows, or squirrels, but also in tree cavities (A.C. Bent 1938, Life histories of North American birds of prey, Part II, U.S. Natl. Mus., Washington, DC U.S.A.; P.A. Johnsgard 1988, North American owls, Smithsonian Inst. Press, Washington DC U.S.A.). A few records...

A numerical study of active structural acoustic control in a stiffened, double wall cylinder

NASA Technical Reports Server (NTRS)

Grosveld, Ferdinand W.; Coats, T. J.; Lester, H. C.; Silcox, R. J.

1994-01-01

It is demonstrated that active structural acoustic control of complex structural/acoustic coupling can be numerically modeled using finite element and boundary element techniques in conjunction with an optimization procedure to calculate control force amplitudes. Appreciable noise reduction is obtained when the structure is excited at a structural resonance of the outer shell or an acoustic resonance of the inner cavity. Adding ring stiffeners as a connection between the inner and outer shells provides an additional structural transmission path to the interior cavity and coupled the modal behavior of the inner and outer shells. For the case of excitation at the structural resonance of the unstiffened outer shell, adding the stiffeners raises the structural resonance frequencies. The effectiveness of the control forces is reduced due to the off resonance structural response. For excitation at an acoustic cavity resonance, the controller effectiveness is enhanced.

Tree-Structured Infinite Sparse Factor Model

PubMed Central

Zhang, XianXing; Dunson, David B.; Carin, Lawrence

2013-01-01

A tree-structured multiplicative gamma process (TMGP) is developed, for inferring the depth of a tree-based factor-analysis model. This new model is coupled with the nested Chinese restaurant process, to nonparametrically infer the depth and width (structure) of the tree. In addition to developing the model, theoretical properties of the TMGP are addressed, and a novel MCMC sampler is developed. The structure of the inferred tree is used to learn relationships between high-dimensional data, and the model is also applied to compressive sensing and interpolation of incomplete images. PMID:25279389

Metallic dielectric photonic crystals and methods of fabrication

DOEpatents

Chou, Jeffrey Brian; Kim, Sang-Gook

2017-12-05

A metallic-dielectric photonic crystal is formed with a periodic structure defining a plurality of resonant cavities to selectively absorb incident radiation. A metal layer is deposited on the inner surfaces of the resonant cavities and a dielectric material fills inside the resonant cavities. This photonic crystal can be used to selectively absorb broadband solar radiation and then reemit absorbed radiation in a wavelength band that matches the absorption band of a photovoltaic cell. The photonic crystal can be fabricated by patterning a sacrificial layer with a plurality of holes, into which is deposited a supporting material. Removing the rest of the sacrificial layer creates a supporting structure, on which a layer of metal is deposited to define resonant cavities. A dielectric material then fills the cavities to form the photonic crystal.

Metallic dielectric photonic crystals and methods of fabrication

DOEpatents

Chou, Jeffrey Brian; Kim, Sang-Gook

2016-12-20

A metallic-dielectric photonic crystal is formed with a periodic structure defining a plurality of resonant cavities to selectively absorb incident radiation. A metal layer is deposited on the inner surfaces of the resonant cavities and a dielectric material fills inside the resonant cavities. This photonic crystal can be used to selectively absorb broadband solar radiation and then reemit absorbed radiation in a wavelength band that matches the absorption band of a photovoltaic cell. The photonic crystal can be fabricated by patterning a sacrificial layer with a plurality of holes, into which is deposited a supporting material. Removing the rest of the sacrificial layer creates a supporting structure, on which a layer of metal is deposited to define resonant cavities. A dielectric material then fills the cavities to form the photonic crystal.

Atypical den use of Carolina Northern Flying Squirrels (Glaucomys sabrinus coloratus) in the southern Appalachian Mountains

USGS Publications Warehouse

Diggins, Corinne A.; Kelly, Christine A.; Ford, W. Mark

2015-01-01

Glaucomys sabrinus coloratus (Carolina Northern Flying Squirrel) is a federally endangered subspecies that occurs in high elevation forests of the southern Appalachian Mountains. Denning sites may be a limiting factor for this subspecies in areas where cavity trees are not abundant or where interspecific competition from other tree squirrels occurs. This shortage can result in use of unusual denning sites, such as subterranean dens. Herein, we report atypical denning habits of radio-collared Carolina Northern Flying Squirrels in southwestern Virginia and western North Carolina from 2008 to 2011 and 2014. Increased knowledge of denning habitats may be beneficial for conservation and habitat management of this subspecies, particularly in sub-optimal or degraded habitats.

KSC-07pd2901

NASA Image and Video Library

2007-10-20

KENNEDY SPACE CENTER, FLA. -- Debris from apparent contact with a tree near Kennedy Space Center's Shuttle Landing Facility can be seen in the strobe light cavity on the left side of one of NASA's Shuttle Training Aircraft, or STA. The left position light and wing tip also received minor damage. The incident occurred during landing about 6:30 p.m. EDT Oct. 19 following a training session. An STA flight instructor was piloting the aircraft. The flight crew was unaware of any contact with the tree, and there were no injuries. Thunderstorms were in the area at the time of the incident, which is under investigation. The STA is a twin-engine Gulfstream II jet that was modified to simulate a space shuttle during landing. Photo credit: NASA/Kim Shiflett

KSC-07pd2900

NASA Image and Video Library

2007-10-20

KENNEDY SPACE CENTER, FLA. -- Debris from apparent contact with a tree near Kennedy Space Center's Shuttle Landing Facility can be seen in the position light cavity on the left side of one of NASA's Shuttle Training Aircraft, or STA. The left strobe light and wing tip also received minor damage. The incident occurred during landing about 6:30 p.m. EDT Oct. 19 following a training session. An STA flight instructor was piloting the aircraft. The flight crew was unaware of any contact with the tree, and there were no injuries. Thunderstorms were in the area at the time of the incident, which is under investigation. The STA is a twin-engine Gulfstream II jet that was modified to simulate a space shuttle during landing. Photo credit: NASA/Kim Shiflett

Electroosmotic flow in a microcavity with nonuniform surface charges.

PubMed

Halpern, David; Wei, Hsien-Hung

2007-08-28

In this work, we theoretically explore the characteristics of electroosmostic flow (EOF) in a microcavity with nonuniform surface charges. It is well known that a uniformly charged EOF does not give rise to flow separation because of its irrotational nature, as opposed to the classical problem of viscous flow past a cavity. However, if the cavity walls bear nonuniform surface charges, then the similitude between electric and flow fields breaks down, leading to the generation of vorticity in the cavity. Because this vorticity must necessarily diffuse into the exterior region that possesses a zero vorticity set by a uniform EOF, a new flow structure emerges. Assuming Stokes flow, we employ a boundary element method to explore how a nonuniform charge distribution along the cavity surface affects the flow structure. The results show that the stream can be susceptible to flow separation and exhibits a variety of flow structures, depending on the distributions of zeta potentials and the aspect ratio of the cavity. The interactions between patterned EOF vortices and Moffatt eddies are further demonstrated for deep cavities. This work not only has implications for electrokinetic flow induced by surface imperfections but also provides optimal strategies for achieving effective mixing in microgrooves.

Fabrication method for small-scale structures with non-planar features

DOEpatents

Burckel, David Bruce; Ten Eyck, Gregory A.

2016-09-20

The fabrication of small-scale structures is disclosed. A unit-cell of a small-scale structure with non-planar features is fabricated by forming a membrane on a suitable material. A pattern is formed in the membrane and a portion of the substrate underneath the membrane is removed to form a cavity. Resonators are then directionally deposited on the wall or sides of the cavity. The cavity may be rotated during deposition to form closed-loop resonators. The resonators may be non-planar. The unit-cells can be formed in a layer that includes an array of unit-cells.

Fabrication of small-scale structures with non-planar features

DOEpatents

Burckel, David B.; Ten Eyck, Gregory A.

2015-11-19

The fabrication of small-scale structures is disclosed. A unit-cell of a small-scale structure with non-planar features is fabricated by forming a membrane on a suitable material. A pattern is formed in the membrane and a portion of the substrate underneath the membrane is removed to form a cavity. Resonators are then directionally deposited on the wall or sides of the cavity. The cavity may be rotated during deposition to form closed-loop resonators. The resonators may be non-planar. The unit-cells can be formed in a layer that includes an array of unit-cells.

Investigation of combustion characteristics in a scramjet combustor using a modified flamelet model

NASA Astrophysics Data System (ADS)

Zhao, Guoyan; Sun, Mingbo; Wang, Hongbo; Ouyang, Hao

2018-07-01

In this study, the characteristics of supersonic combustion inside an ethylene-fueled scramjet combustor equipped with multi-cavities were investigated with different injection schemes. Experimental results showed that the flames concentrated in the cavity and separated boundary layer downstream of the cavity, and they occupied the flow channel further enhancing the bulk flow compression. The flame structure in distributed injection scheme differed from that in centralized injection scheme. In numerical simulations, a modified flamelet model was introduced to consider that the pressure distribution is far from homogenous inside the scramjet combustor. Compared with original flamelet model, numerical predictions based on the modified model showed better agreement with the experimental results, validating the reliability of the calculations. Based on the modified model, the simulations with different injection schemes were analysed. The predicted flame agreed reasonably with the experimental observations in structure. The CO masses were concentrated in cavity and subsonic region adjacent to the cavity shear layer leading to intense heat release. Compared with centralized scheme, the higher jet mixing efficiency in distributed scheme induced an intense combustion in posterior upper cavity and downstream of the cavity. From streamline and isolation surfaces, the combustion at trail of lower cavity was depressed since the bulk flow downstream of the cavity is pushed down.

Photon transport in a dissipative chain of nonlinear cavities

NASA Astrophysics Data System (ADS)

Biella, Alberto; Mazza, Leonardo; Carusotto, Iacopo; Rossini, Davide; Fazio, Rosario

2015-05-01

By means of numerical simulations and the input-output formalism, we study photon transport through a chain of coupled nonlinear optical cavities subject to uniform dissipation. Photons are injected from one end of the chain by means of a coherent source. The propagation through the array of cavities is sensitive to the interplay between the photon hopping strength and the local nonlinearity in each cavity. We characterize photon transport by studying the populations and the photon correlations as a function of the cavity position. When complemented with input-output theory, these quantities provide direct information about photon transmission through the system. The position of single-photon and multiphoton resonances directly reflects the structure of the many-body energy levels. This shows how a study of transport along a coupled cavity array can provide rich information about the strongly correlated (many-body) states of light even in presence of dissipation. The numerical algorithm we use, based on the time-evolving block decimation scheme adapted to mixed states, allows us to simulate large arrays (up to 60 cavities). The scaling of photon transmission with the number of cavities does depend on the structure of the many-body photon states inside the array.

[Design of Complex Cavity Structure in Air Route System of Automated Peritoneal Dialysis Machine].

PubMed

Quan, Xiaoliang

2017-07-30

This paper introduced problems about Automated Peritoneal Dialysis machine(APD) that the lack of technical issues such as the structural design of the complex cavities. To study the flow characteristics of this special structure, the application of ANSYS CFX software is used with k-ε turbulence model as the theoretical basis of fluid mechanics. The numerical simulation of flow field simulation result in the internal model can be gotten after the complex structure model is imported into ANSYS CFX module. Then, it will present the distribution of complex cavities inside the flow field and the flow characteristics parameter, which will provide an important reference design for APD design.

New perspectives on the ecology of tree structure and tree communities through terrestrial laser scanning.

PubMed

Malhi, Yadvinder; Jackson, Tobias; Patrick Bentley, Lisa; Lau, Alvaro; Shenkin, Alexander; Herold, Martin; Calders, Kim; Bartholomeus, Harm; Disney, Mathias I

2018-04-06

Terrestrial laser scanning (TLS) opens up the possibility of describing the three-dimensional structures of trees in natural environments with unprecedented detail and accuracy. It is already being extensively applied to describe how ecosystem biomass and structure vary between sites, but can also facilitate major advances in developing and testing mechanistic theories of tree form and forest structure, thereby enabling us to understand why trees and forests have the biomass and three-dimensional structure they do. Here we focus on the ecological challenges and benefits of understanding tree form, and highlight some advances related to capturing and describing tree shape that are becoming possible with the advent of TLS. We present examples of ongoing work that applies, or could potentially apply, new TLS measurements to better understand the constraints on optimization of tree form. Theories of resource distribution networks, such as metabolic scaling theory, can be tested and further refined. TLS can also provide new approaches to the scaling of woody surface area and crown area, and thereby better quantify the metabolism of trees. Finally, we demonstrate how we can develop a more mechanistic understanding of the effects of avoidance of wind risk on tree form and maximum size. Over the next few years, TLS promises to deliver both major empirical and conceptual advances in the quantitative understanding of trees and tree-dominated ecosystems, leading to advances in understanding the ecology of why trees and ecosystems look and grow the way they do.

Temperature dependence of the hydrated electron's excited-state relaxation. I. Simulation predictions of resonance Raman and pump-probe transient absorption spectra of cavity and non-cavity models

NASA Astrophysics Data System (ADS)

Zho, Chen-Chen; Farr, Erik P.; Glover, William J.; Schwartz, Benjamin J.

2017-08-01

We use one-electron non-adiabatic mixed quantum/classical simulations to explore the temperature dependence of both the ground-state structure and the excited-state relaxation dynamics of the hydrated electron. We compare the results for both the traditional cavity picture and a more recent non-cavity model of the hydrated electron and make definite predictions for distinguishing between the different possible structural models in future experiments. We find that the traditional cavity model shows no temperature-dependent change in structure at constant density, leading to a predicted resonance Raman spectrum that is essentially temperature-independent. In contrast, the non-cavity model predicts a blue-shift in the hydrated electron's resonance Raman O-H stretch with increasing temperature. The lack of a temperature-dependent ground-state structural change of the cavity model also leads to a prediction of little change with temperature of both the excited-state lifetime and hot ground-state cooling time of the hydrated electron following photoexcitation. This is in sharp contrast to the predictions of the non-cavity model, where both the excited-state lifetime and hot ground-state cooling time are expected to decrease significantly with increasing temperature. These simulation-based predictions should be directly testable by the results of future time-resolved photoelectron spectroscopy experiments. Finally, the temperature-dependent differences in predicted excited-state lifetime and hot ground-state cooling time of the two models also lead to different predicted pump-probe transient absorption spectroscopy of the hydrated electron as a function of temperature. We perform such experiments and describe them in Paper II [E. P. Farr et al., J. Chem. Phys. 147, 074504 (2017)], and find changes in the excited-state lifetime and hot ground-state cooling time with temperature that match well with the predictions of the non-cavity model. In particular, the experiments reveal stimulated emission from the excited state with an amplitude and lifetime that decreases with increasing temperature, a result in contrast to the lack of stimulated emission predicted by the cavity model but in good agreement with the non-cavity model. Overall, until ab initio calculations describing the non-adiabatic excited-state dynamics of an excess electron with hundreds of water molecules at a variety of temperatures become computationally feasible, the simulations presented here provide a definitive route for connecting the predictions of cavity and non-cavity models of the hydrated electron with future experiments.

Extended Full Computation-Tree Logic with Sequence Modal Operator: Representing Hierarchical Tree Structures

NASA Astrophysics Data System (ADS)

Kamide, Norihiro; Kaneiwa, Ken

An extended full computation-tree logic, CTLS*, is introduced as a Kripke semantics with a sequence modal operator. This logic can appropriately represent hierarchical tree structures where sequence modal operators in CTLS* are applied to tree structures. An embedding theorem of CTLS* into CTL* is proved. The validity, satisfiability and model-checking problems of CTLS* are shown to be decidable. An illustrative example of biological taxonomy is presented using CTLS* formulas.

"Growing trees backwards": Description of a stand reconstruction model (P-53)

Treesearch

Jonathan D. Bakker; Andrew J. Sanchez Meador; Peter Z. Fule; David W. Huffman; Margaret M. Moore

2008-01-01

We describe an individual-tree model that uses contemporary measurements to "grow trees backward" and reconstruct past tree diameters and stand structure in ponderosa pine dominated stands of the Southwest. Model inputs are contemporary structural measurements of all snags, logs, stumps, and living trees, and radial growth measurements, if available. Key...

"Growing trees backwards": Description of a stand reconstruction model

Treesearch

Jonathan D. Bakker; Andrew J. Sanchez Meador; Peter Z. Fule; David W. Huffman; Margaret M. Moore

2008-01-01

We describe an individual-tree model that uses contemporary measurements to "grow trees backward" and reconstruct past tree diameters and stand structure in ponderosa pine dominated stands of the Southwest. Model inputs are contemporary structural measurements of all snags, logs, stumps, and living trees, and radial growth measurements, if available. Key...

Nest Site Characteristics of Cavity Nesting Birds in Central Missouri

Treesearch

Jeffery D. Brawn; Bernice Tannenbaum; Keith E. Evans

1984-01-01

Two study sites in central Missouri oak-hickory forests were searched for nest sites of cavity nesting birds. Researchers located and measured 133 nests of 11 species. Cavity nesting bird habitat selection is affected by both snag characteristics and vegetation structure.

Isolation of intact sub-dermal secretory cavities from Eucalyptus

PubMed Central

2010-01-01

Background The biosynthesis of plant natural products in sub-dermal secretory cavities is poorly understood at the molecular level, largely due to the difficulty of physically isolating these structures for study. Our aim was to develop a protocol for isolating live and intact sub-dermal secretory cavities, and to do this, we used leaves from three species of Eucalyptus with cavities that are relatively large and rich in essential oils. Results Leaves were digested using a variety of commercially available enzymes. A pectinase from Aspergillus niger was found to allow isolation of intact cavities after a relatively short incubation (12 h), with no visible artifacts from digestion and no loss of cellular integrity or cavity contents. Several measurements indicated the potential of the isolated cavities for further functional studies. First, the cavities were found to consume oxygen at a rate that is comparable to that estimated from leaf respiratory rates. Second, mRNA was extracted from cavities, and it was used to amplify a cDNA fragment with high similarity to that of a monoterpene synthase. Third, the contents of the cavity lumen were extracted, showing an unexpectedly low abundance of volatile essential oils and a sizeable amount of non-volatile material, which is contrary to the widely accepted role of secretory cavities as predominantly essential oil repositories. Conclusions The protocol described herein is likely to be adaptable to a range of Eucalyptus species with sub-dermal secretory cavities, and should find wide application in studies of the developmental and functional biology of these structures, and the biosynthesis of the plant natural products they contain. PMID:20807444

STUDY OF THE 3D GEOMETRIC STRUCTURE AND TEMPERATURE OF A CORONAL CAVITY USING THE LIMB SYNOPTIC MAP METHOD

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karna, N.; Pesnell, W. Dean; Webber, S. A. Hess

2015-09-10

We present the three-dimensional geometric structure and thermal properties of a coronal cavity deduced from limb synoptic maps. The observations are extreme ultraviolet images from the Atmospheric Imager Assembly (AIA) and magnetic images from the Helioseismic Magnetic Imager instruments on board the Solar Dynamics Observatory. We describe a limb synoptic-map method used to effectively identify and measure cavities from annuli of radiance above the solar limb. We find that cavities are best seen in the 211, 193, and 171 Å passbands. The prominence associated with each cavity is best seen in the 304 Å synoptic maps. We also estimate themore » thermal properties of the cavity and surrounding plasma by combining the AIA radiances with a differential emission measure analysis. This paper focuses on one long cavity from a catalog of coronal cavities that we are developing. Cavities in this catalog are designated by a coded name using the Carrington Rotation number and position. Cavity C211347177N was observed during Carrington Rotation 2113 at the northwestern limb of the solar disk with an average latitude of 47° N and a central longitude of 177°. We showed the following. (1) The cavity is a long tube with an elliptical cross-section with ratios of the length to width and the length to height of 11:1 and 7:1, respectively. (2) The cavity is about 1360 Mm long, or 170° in longitude. (3) It is tilted in latitude. (4) And it is slightly hotter than its surroundings.« less

Non-unique key B-Tree implementation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ries, D.R.

1980-12-23

The B-Trees are an indexed method to allow fast retrieval and order preserving updates to a FRAMIS relation based on a designated set of keys in the relation. A B-Tree access method is being implemented to provide indexed and sequential (in index order) access to FRAMIS relations. The implementation modifies the basic B-Tree structure to correctly allow multiple key values and still maintain the balanced page fill property of B-Trees. The data structures of the B-Tree are presented first, including the FRAMIS solution to the duplicate key value problem. Then the access level routines and utilities are presented. These routinesmore » include the original B-Tree creation; searching the B-Tree; and inserting, deleting, and replacing tuples on the B-Tree. In conclusion, the uses of the B-Tree access structures at the semantic level to enhance the FRAMIS performance are discussed. 10 figures.« less

Investigation on heat transfer analysis and its effect on a multi-mode, beam-wave interaction for a 140 GHz, MW-class gyrotron

NASA Astrophysics Data System (ADS)

Liu, Qiao; Liu, Yinghui; Chen, Zhaowei; Niu, Xinjian; Li, Hongfu; Xu, Jianhua

2018-04-01

The interaction cavity of a 140 GHz, 1 MW continuous wave gyrotron developed in UESTC will be loaded with a very large heat load in the inner surface during operation. In order to reduce the heat, the axial wedge grooves of the outside surface of the cavity are considered and employed as the heat radiation structure. Thermoanalysis and structural analysis were discussed in detail to obtain the effects of heat on the cavity. In thermoanalysis, the external coolant-flow rates ranging from 20 L/min to 50 L/min were considered, and the distribution of wall loading was loaded as the heat flux source. In structural analysis, the cavity's deformation caused by the loads of heat and pressure was calculated. Compared with a non-deformed cavity, the effects of deformation on the performance of a cavity were discussed. For a cold-cavity, the results show that the quality factor would be reduced by 72, 89, 99 and 171 at the flow rates of 50 L/min, 40 L/min, 30 L/min and 20 L/min, respectively. Correspondingly, the cold-cavity frequencies would be decreased by 0.13 GHz, 0.15 GHz, 0.19 GHz and 0.38 GHz, respectively. For a hot-cavity, the results demonstrate that the output port frequencies would be dropped down, but the offset would be gradually decreased with increasing coolant-flow rate. Meanwhile, the output powers would be reduced dramatically with decreasing coolant-flow rate. In addition, when the coolant-flow rate reaches 40 L/min, the output power and the frequency are just reduced by 30 kW and 0.151 GHz, respectively.

Phylogenetic Structure of Tree Species across Different Life Stages from Seedlings to Canopy Trees in a Subtropical Evergreen Broad-Leaved Forest.

PubMed

Jin, Yi; Qian, Hong; Yu, Mingjian

2015-01-01

Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is necessary for understanding forest community assembly. Here, we examine the phylogenetic structure of tree species across life stages from seedlings to canopy trees, as well as forest gap influence on the phylogenetic structure of forest regeneration in a forest of the subtropical region in China. We investigate changes in phylogenetic relatedness (measured as NRI) of tree species from seedlings, saplings, treelets to canopy trees; we compare the phylogenetic turnover (measured as βNRI) between canopy trees and seedlings in forest understory with that between canopy trees and seedlings in forest gaps. We found that phylogenetic relatedness generally increases from seedlings through saplings and treelets up to canopy trees, and that phylogenetic relatedness does not differ between seedlings in forest understory and those in forest gaps, but phylogenetic turnover between canopy trees and seedlings in forest understory is lower than that between canopy trees and seedlings in forest gaps. We conclude that tree species tend to be more closely related from seedling to canopy layers, and that forest gaps alter the seedling phylogenetic turnover of the studied forest. It is likely that the increasing trend of phylogenetic clustering as tree stem size increases observed in this subtropical forest is primarily driven by abiotic filtering processes, which select a set of closely related evergreen broad-leaved tree species whose regeneration has adapted to the closed canopy environments of the subtropical forest developed under the regional monsoon climate.

Phylogenetic Structure of Tree Species across Different Life Stages from Seedlings to Canopy Trees in a Subtropical Evergreen Broad-Leaved Forest

PubMed Central

Jin, Yi; Qian, Hong; Yu, Mingjian

2015-01-01

Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is necessary for understanding forest community assembly. Here, we examine the phylogenetic structure of tree species across life stages from seedlings to canopy trees, as well as forest gap influence on the phylogenetic structure of forest regeneration in a forest of the subtropical region in China. We investigate changes in phylogenetic relatedness (measured as NRI) of tree species from seedlings, saplings, treelets to canopy trees; we compare the phylogenetic turnover (measured as βNRI) between canopy trees and seedlings in forest understory with that between canopy trees and seedlings in forest gaps. We found that phylogenetic relatedness generally increases from seedlings through saplings and treelets up to canopy trees, and that phylogenetic relatedness does not differ between seedlings in forest understory and those in forest gaps, but phylogenetic turnover between canopy trees and seedlings in forest understory is lower than that between canopy trees and seedlings in forest gaps. We conclude that tree species tend to be more closely related from seedling to canopy layers, and that forest gaps alter the seedling phylogenetic turnover of the studied forest. It is likely that the increasing trend of phylogenetic clustering as tree stem size increases observed in this subtropical forest is primarily driven by abiotic filtering processes, which select a set of closely related evergreen broad-leaved tree species whose regeneration has adapted to the closed canopy environments of the subtropical forest developed under the regional monsoon climate. PMID:26098916

Efficient Characterization of Protein Cavities within Molecular Simulation Trajectories: trj_cavity.

PubMed

Paramo, Teresa; East, Alexandra; Garzón, Diana; Ulmschneider, Martin B; Bond, Peter J

2014-05-13

Protein cavities and tunnels are critical in determining phenomena such as ligand binding, molecular transport, and enzyme catalysis. Molecular dynamics (MD) simulations enable the exploration of the flexibility and conformational plasticity of protein cavities, extending the information available from static experimental structures relevant to, for example, drug design. Here, we present a new tool (trj_cavity) implemented within the GROMACS ( www.gromacs.org ) framework for the rapid identification and characterization of cavities detected within MD trajectories. trj_cavity is optimized for usability and computational efficiency and is applicable to the time-dependent analysis of any cavity topology, and optional specialized descriptors can be used to characterize, for example, protein channels. Its novel grid-based algorithm performs an efficient neighbor search whose calculation time is linear with system size, and a comparison of performance with other widely used cavity analysis programs reveals an orders-of-magnitude improvement in the computational cost. To demonstrate its potential for revealing novel mechanistic insights, trj_cavity has been used to analyze long-time scale simulation trajectories for three diverse protein cavity systems. This has helped to reveal, respectively, the lipid binding mechanism in the deep hydrophobic cavity of a soluble mite-allergen protein, Der p 2; a means for shuttling carbohydrates between the surface-exposed substrate-binding and catalytic pockets of a multidomain, membrane-proximal pullulanase, PulA; and the structural basis for selectivity in the transmembrane pore of a voltage-gated sodium channel (NavMs), embedded within a lipid bilayer environment. trj_cavity is available for download under an open-source license ( http://sourceforge.net/projects/trjcavity ). A simplified, GROMACS-independent version may also be compiled.

A survey of cavity-nesting bees and wasps in loblolly pine stands of the Savannah River Site, Aiken County, South Carolina.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Horn, S.; Hanula, J., L.

2004-03-10

Horn, Scott, and James L. Hanula. 2004. A survey of cavity-nesting bees and wasps in loblolly pine stands of the Savannah River Site, Aiken County, South Carolina. 39(3): 464-469. Abstract: In recent years concern over widespread losses in biodiversity has grown to include a possible decline of many native pollinators, primarily bees. Factors such as habitat fragmentation, agricultural practices, use of pesticides, the introduction of invasive species, or changes in land use may negatively impact these vital organisims. Most reported studies show that human impacts on pollinators are overwhelmingly negative. Reductions in pollinator populations may profoundly impact plant population dynamicsmore » and ecosystem function. Little baseline data exists on the diversity and relative abundance of bees and wasps in southern forests. The objective of this study was to develop a simple, effective method of surveying cavity-nesting bees and wasps and to determine species diversity in mature forests of loblolly pine, the most widely planted tree species in the southern United States.« less

Organochlorine contaminants and Tree Swallows along the Fox River and Green Bay, Wisconsin, USA

USGS Publications Warehouse

Custer, Christine M.; Custer, T.W.; Allen, P. David; Stromborg, K.L.; Melancon, M.J.; Adams, N.J.; Slotow, R.H.

1999-01-01

Green Bay, Wisconsin is contaminated with polychlorinated biphenyls (PCBs) however, whether these contaminants affect reproduction in insectivorous birds is unknown. Tree Swallows, Tachycineta bicolor, are secondary cavity nesters that will nest in boxes and tolerate handling. Because Tree Swallows are aquatic insectivores, residues in their tissues are primarily indicative of contaminants in sediments. We studied swallows at two contaminated and two reference colonies in 1993, 1994, and 1995 in the Green Bay area. Swallows at the two contaminated sites had significantly higher PCB levels in eggs when compared to two reference sites. Eggs from clutches that contained dead embryos had higher PCB concentrations than eggs from clutches where all eggs hatched; there were no contaminant effects overall on reproduction, however. Twelve-day-old nestlings at the two contaminated sites accumulated significantly more PCBs than did nestlings at the reference sites demonstrating that PCB contamination came from the local area. The PCB congener profile in 12-day-old nestlings mirrored the congener profile in their food.

Biostratinomic processes for the development of mud-cast logs in Carboniferous and Holocene swamps

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gastaldo, R.A.; Demko, T.M.; Liu, Yuejin

1989-08-01

Prostrate trees are common features of fossil forest litters, and are frequently preserved as mud-casts. Specimens of Carboniferous mud-cast trees and a mud-filled incipient cast of a Holocene Taxodium have been investigated to determine the biostratinomic processes responsible for their formation. These processes are complex. Hollowing of tree trunks may take place during life or by degradation after death. Once the trunk has fallen, the hollow cavity is supported by surrounding wood and/or bark tissues and acts as a conduit for sediment-laden waters. Leaf litter may be preserved on bedding surfaces. The infilling sequence of horizontal, parallel bedded, fine-grained sedimentmore » is deposited from suspended load during multiple overbank flooding events. These results differ from experimentally produced pith casts in which the sediment grain size is of fine sand. In Holocene specimens, alluvial mud within the log may provide a substrate for infaunal invertebrates. No evidence of infaunal burrowing in Carboniferous analogues exists.« less

Relative Suffix Trees.

PubMed

Farruggia, Andrea; Gagie, Travis; Navarro, Gonzalo; Puglisi, Simon J; Sirén, Jouni

2018-05-01

Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into reducing the space usage, leading ultimately to compressed suffix trees. These compressed data structures can efficiently simulate the suffix tree, while using space proportional to a compressed representation of the sequence. In this work, we take a new approach to compressed suffix trees for repetitive sequence collections, such as collections of individual genomes. We compress the suffix trees of individual sequences relative to the suffix tree of a reference sequence. These relative data structures provide competitive time/space trade-offs, being almost as small as the smallest compressed suffix trees for repetitive collections, and competitive in time with the largest and fastest compressed suffix trees.

Relative Suffix Trees

PubMed Central

Farruggia, Andrea; Gagie, Travis; Navarro, Gonzalo; Puglisi, Simon J; Sirén, Jouni

2018-01-01

Abstract Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into reducing the space usage, leading ultimately to compressed suffix trees. These compressed data structures can efficiently simulate the suffix tree, while using space proportional to a compressed representation of the sequence. In this work, we take a new approach to compressed suffix trees for repetitive sequence collections, such as collections of individual genomes. We compress the suffix trees of individual sequences relative to the suffix tree of a reference sequence. These relative data structures provide competitive time/space trade-offs, being almost as small as the smallest compressed suffix trees for repetitive collections, and competitive in time with the largest and fastest compressed suffix trees. PMID:29795706

Traveling wave linear accelerator with RF power flow outside of accelerating cavities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dolgashev, Valery A.

A high power RF traveling wave accelerator structure includes a symmetric RF feed, an input matching cell coupled to the symmetric RF feed, a sequence of regular accelerating cavities coupled to the input matching cell at an input beam pipe end of the sequence, one or more waveguides parallel to and coupled to the sequence of regular accelerating cavities, an output matching cell coupled to the sequence of regular accelerating cavities at an output beam pipe end of the sequence, and output waveguide circuit or RF loads coupled to the output matching cell. Each of the regular accelerating cavities hasmore » a nose cone that cuts off field propagating into the beam pipe and therefore all power flows in a traveling wave along the structure in the waveguide.« less

Two-color surface-emitting lasers by a GaAs-based coupled multilayer cavity structure for coherent terahertz light sources

NASA Astrophysics Data System (ADS)

Lu, Xiangmeng; Ota, Hiroto; Kumagai, Naoto; Minami, Yasuo; Kitada, Takahiro; Isu, Toshiro

2017-11-01

Two-color surface-emitting lasers were fabricated using a GaAs-based coupled multilayer cavity structure grown by molecular beam epitaxy. InGaAs/GaAs multiple quantum wells were introduced only in the upper cavity for two-mode emission in the near-infrared region. Two-color lasing of the device was successfully demonstrated under pulsed current operations at room temperature. We also observed good temporal coherence of the two-color laser light using a Michelson interferometer. A coherent terahertz source is expected when a wafer-bonded coupled cavity consisting of (0 0 1) and non-(0 0 1) epitaxial films is used for the two-color laser device, in which the difference-frequency generation can be enabled by the second-order nonlinear response in the lower cavity.

Periodic permanent magnet focused klystron

DOEpatents

Ferguson, Patrick; Read, Michael; Ives, R Lawrence

2015-04-21

A periodic permanent magnet (PPM) klystron has beam transport structures and RF cavity structures, each of which has permanent magnets placed substantially equidistant from a beam tunnel formed about the central axis, and which are also outside the extent of a cooling chamber. The RF cavity sections also have permanent magnets which are placed substantially equidistant from the beam tunnel, but which include an RF cavity coupling to the beam tunnel for enhancement of RF carried by an electron beam in the beam tunnel.

The Three-part Structure of a Filament-unrelated Solar Coronal Mass Ejection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Song, H. Q.; Chen, Y.; Wang, B.

Coronal mass ejections (CMEs) often exhibit the typical three-part structure in the corona when observed with white-light coronagraphs, i.e., the bright leading front, dark cavity, and bright core, corresponding to a high-low-high density sequence. As CMEs result from eruptions of magnetic flux ropes (MFRs), which can possess either lower (e.g., coronal-cavity MFRs) or higher (e.g., hot-channel MFRs) density compared to their surroundings in the corona, the traditional opinion regards the three-part structure as the manifestations of coronal plasma pileup (high density), coronal-cavity MFR (low density), and filament (high density) contained in the trailing part of MFR, respectively. In this paper,more » we demonstrate that filament-unrelated CMEs can also exhibit the classical three-part structure. The observations were made from different perspectives through an event that occurred on 2011 October 4. The CME cavity corresponds to the low-density zone between the leading front and the high-density core, and it is obvious in the low corona and gradually becomes fuzzy when propagating outward. The bright core corresponds to a high-density structure that is suggested to be an erupting MFR. The MFR is recorded from both edge-on and face-on perspectives, exhibiting different morphologies that are due to projection effects. We stress that the zone (MFR) with lower (higher) density in comparison to the surroundings can appear as the dark cavity (bright core) when observed through white-light coronagraphs, which is not necessarily the coronal-cavity MFR (erupted filament).« less

Mode structure of a quantum cascade laser

NASA Astrophysics Data System (ADS)

Bogdanov, A. A.; Suris, R. A.

2011-03-01

We analyze the mode structure of a quantum cascade laser (QCL) cavity considering the surface plasmon-polariton modes and familiar modes of hollow resonator jointly, within a single model. We present a comprehensive mode structure analysis of the laser cavity, varying its geometric parameters and free electron concentration inside cavity layers within a wide range. Our analysis covers, in particular, the cases of metal-insulator-metal and insulator-metal-insulator waveguides. We discuss the phenomenon of negative dispersion for eigenmodes in detail and explain the nature of this phenomenon. We specify a waveguide parameters domain in which negative dispersion exists. The mode structure of QCL cavity is considered in the case of the anisotropic electrical properties of the waveguide materials. We show that anisotropy of the waveguide core results in propagation of Langmuir modes that are degenerated in the case of the isotropic core. Comparative analysis of optical losses due to free carrier absorption is presented for different modes within the frequency range from terahertz to ultraviolet frequencies.

LED lamp or bulb with remote phosphor and diffuser configuration with enhanced scattering properties

DOEpatents

Tong, Tao; Le Toquin, Ronan; Keller, Bernd; Tarsa, Eric; Youmans, Mark; Lowes, Theodore; Medendorp, Jr., Nicholas W; Van De Ven, Antony; Negley, Gerald

2014-11-11

An LED lamp or bulb is disclosed that comprises a light source, a heat sink structure and an optical cavity. The optical cavity comprises a phosphor carrier having a conversions material and arranged over an opening to the cavity. The phosphor carrier comprises a thermally conductive transparent material and is thermally coupled to the heat sink structure. An LED based light source is mounted in the optical cavity remote to the phosphor carrier with light from the light source passing through the phosphor carrier. A diffuser dome is included that is mounted over the optical cavity, with light from the optical cavity passing through the diffuser dome. The properties of the diffuser, such as geometry, scattering properties of the scattering layer, surface roughness or smoothness, and spatial distribution of the scattering layer properties may be used to control various lamp properties such as color uniformity and light intensity distribution as a function of viewing angle.

Analysis and improvement of the cavity structure of steam receiver of 1MWe solar tower power plant

NASA Astrophysics Data System (ADS)

Yu, Qiang; Wang, Zhifeng; Zhu, Lingzhi

2017-06-01

The central receiver, which plays a dominant role in the radiation-heat conversion, is one of the most important components in the solar tower power plants. Its performance can directly affect the efficiency of the entire solar power generation system. In general, the performance of the central receiver is mainly determined by two aspects: the first is the receiver structure and arrangement of heating pipes, the other is the integral control and operation strategy. The former is the internal essence of the receiver and the latter is extrinsic. In this paper, the latter is temporarily not in the scope of the discussion. According to the previous cavity structure and arrangement of the heating pipes, it is found that there are varying degrees of deformation to the heating pipes, especially for the superheated pipes. In order to make some improvement for the cavity receiver, firstly, the most likely causes were analyzed according to the previous structure. Secondly, a possible cavity structure was proposed according to the calculation results. The results show that the performance of the receiver is better than the previous one.

Resonator modes and mode dynamics for an external cavity-coupled laser array

NASA Astrophysics Data System (ADS)

Nair, Niketh; Bochove, Erik J.; Aceves, Alejandro B.; Zunoubi, Mohammad R.; Braiman, Yehuda

2015-03-01

Employing a Fox-Li approach, we derived the cold-cavity mode structure and a coupled mode theory for a phased array of N single-transverse-mode active waveguides with feedback from an external cavity. We applied the analysis to a system with arbitrary laser lengths, external cavity design and coupling strengths to the external cavity. The entire system was treated as a single resonator. The effect of the external cavity was modeled by a set of boundary conditions expressed by an N-by-N frequency-dependent matrix relation between incident and reflected fields at the interface with the external cavity. The coupled mode theory can be adapted to various types of gain media and internal and external cavity designs.

Controlled directional scattering cavity for tubular absorbers

DOEpatents

Winston, Roland

1982-01-01

A specular cavity is provided in which an optical receiver is emplaced. The cavity is provided with a series of V groove-like indentations (or pyramidal-type indentations) which redirect energy entering between the receiver and cavity structure onto the receiver. The aperture opening of each V groove is less than half the cavity opening and in most preferred embodiments, much less than half. This enables the optical receiver to be emplaced a distance g from the cavity wherein 0.414r

Spitzer Reveals Stellar 'Family Tree'

NASA Technical Reports Server (NTRS)

2008-01-01

[figure removed for brevity, see original site] High resolution poster version

Generations of stars can be seen in this new infrared portrait from NASA's Spitzer Space Telescope. In this wispy star-forming region, called W5, the oldest stars can be seen as blue dots in the centers of the two hollow cavities (other blue dots are background and foreground stars not associated with the region). Younger stars line the rims of the cavities, and some can be seen as pink dots at the tips of the elephant-trunk-like pillars. The white knotty areas are where the youngest stars are forming. Red shows heated dust that pervades the region's cavities, while green highlights dense clouds.

W5 spans an area of sky equivalent to four full moons and is about 6,500 light-years away in the constellation Cassiopeia. The Spitzer picture was taken over a period of 24 hours.

Like other massive star-forming regions, such as Orion and Carina, W5 contains large cavities that were carved out by radiation and winds from the region's most massive stars. According to the theory of triggered star-formation, the carving out of these cavities pushes gas together, causing it to ignite into successive generations of new stars.

This image contains some of the best evidence yet for the triggered star-formation theory. Scientists analyzing the photo have been able to show that the ages of the stars become progressively and systematically younger with distance from the center of the cavities.

This is a three-color composite showing infrared observations from two Spitzer instruments. Blue represents 3.6-micron light and green shows light of 8 microns, both captured by Spitzer's infrared array camera. Red is 24-micron light detected by Spitzer's multiband imaging photometer.

Boundary Recovery For Delaunay Tetrahedral Meshes Using Local Topological Transformations

PubMed Central

Ghadyani, Hamid; Sullivan, John; Wu, Ziji

2009-01-01

Numerous high-quality, volume mesh-generation systems exist. However, no strategy can address all geometry situations without some element qualities being compromised. Many 3D mesh generation algorithms are based on Delaunay tetrahedralization which frequently fails to preserve the input boundary surface topology. For biomedical applications, this surface preservation can be critical as they usually contain multiple material regions of interest coherently connected. In this paper we present an algorithm as a post-processing method that optimizes local regions of compromised element quality and recovers the original boundary surface facets (triangles) regardless of the original mesh generation strategy. The algorithm carves out a small sub-volume in the vicinity of the missing boundary facet or compromised element, creating a cavity. If the task is to recover a surface boundary facet, a natural exit hole in the cavity will be present. This hole is patched with the missing boundary surface face first followed by other patches to seal the cavity. If the task was to improve a compromised region, then the cavity is already sealed. Every triangular facet of the cavity shell is classified as an active face and can be connected to another shell node creating a tetrahedron. In the process the base of the tetrahedron is removed from the active face list and potentially 3 new active faces are created. This methodology is the underpinnings of our last resort method. Each active face can be viewed as the trunk of a tree. An exhaustive breath and depth search will identify all possible tetrahedral combinations to uniquely fill the cavity. We have streamlined this recursive process reducing the time complexity by orders of magnitude. The original surfaces boundaries (internal and external) are fully restored and the quality of compromised regions improved. PMID:20305743

Bottlenecks and Multiple Introductions: Population Genetics of the Vector of Avian Malaria in Hawaii

DTIC Science & Technology

2000-01-01

extraction. Mounted voucher specimens were entered in the mosquito collection at the Smithsonian Institution, National Museum of Natural History (accession...water troughs and tree cavities. There were very few instances of standing water on the ground in the Big Island, mainly due to the porous volcanic ...in high-elevation populations might then reflect better the history of introductions into the Hawaiian Islands than low-elevation populations. It

Introduction to Superconducting RF Structures and the Effect of High Pressure Rinsing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tajima, Tsuyoshi

2016-06-30

This presentation begins by describing RF superconductivity and SRF accelerating structures. Then the use of superconducting RF structures in a number of accelerators around the world is reviewed; for example, the International Linear Collider (ILC) will use ~16,000 SRF cavities with ~2,000 cryomodules to get 500 GeV e⁺/e⁻ colliding energy. Field emission control was (and still is) a very important practical issue for SRF cavity development. It has been found that high-pressure ultrapure water rinsing as a final cleaning step after chemical surface treatment resulted in consistent performance of single- and multicell superconducting cavities.

Sublattice reversal in GaAs/Ge/GaAs (113)B heterostructures and its application to THz emitting devices based on a coupled multilayer cavity

NASA Astrophysics Data System (ADS)

Lu, Xiangmeng; Kumagai, Naoto; Minami, Yasuo; Kitada, Takahiro

2018-04-01

We fabricated a coupled multilayer cavity with a GaAs/Ge/GaAs sublattice reversal structure for terahertz emission application. Sublattice reversal in GaAs/Ge/GaAs was confirmed by comparing the anisotropic etching profile of an epitaxial sample with those of reference (113)A and (113)B GaAs substrates. The interfaces of GaAs/Ge/GaAs were evaluated at the atomic level by scanning transmission electron microscopy (STEM) and energy-dispersive X-ray spectroscopy (EDX) mapping. Defect-free GaAs/Ge/GaAs heterostructures were observed in STEM images and the sublattice lattice was directly seen through atomic arrangements in EDX mapping. A GaAs/AlAs coupled multilayer cavity with a sublattice reversal structure was grown on the (113)B GaAs substrate after the confirmation of sublattice reversal. Smooth GaAs/AlAs interfaces were formed over the entire region of the coupled multilayer cavity structure both below and above the Ge layer. Two cavity modes with a frequency difference of 2.9 THz were clearly observed.

Uncertainty of large-area estimates of indicators of forest structural gamma diversity: A study based on national forest inventory data

Treesearch

Susanne Winter; Andreas Böck; Ronald E. McRoberts

2012-01-01

Tree diameter and height are commonly measured forest structural variables, and indicators based on them are candidates for assessing forest diversity. We conducted our study on the uncertainty of estimates for mostly large geographic scales for four indicators of forest structural gamma diversity: mean tree diameter, mean tree height, and standard deviations of tree...

Analytical coupled-wave model for photonic crystal surface-emitting quantum cascade lasers.

PubMed

Wang, Zhixin; Liang, Yong; Yin, Xuefan; Peng, Chao; Hu, Weiwei; Faist, Jérôme

2017-05-15

An analytical coupled-wave model is developed for surface-emitting photonic-crystal quantum cascade lasers (PhC-QCLs). This model provides an accurate and efficient analysis of full three-dimensional device structure with large-area cavity size. Various laser properties of interest including the band structure, mode frequency, cavity loss, mode intensity profile, and far field pattern (FFP), as well as their dependence on PhC structures and cavity size, are investigated. Comparison with numerical simulations confirms the accuracy and validity of our model. The calculated FFP and polarization profile well explain the previously reported experimental results. In particular, we reveal the possibility of switching the lasing modes and generating single-lobed FFP by properly tuning PhC structures.

Effect of oxygen plasma modification on refractive index sensing with micro-cavity in-line Mach-Zehnder interferometer

NASA Astrophysics Data System (ADS)

Debowska, Anna K.; Dominik, Magdalena; Koba, Marcin; Janik, Monika; Bock, Wojtek; Śmietana, Mateusz

2016-12-01

A micro-cavity in-line Mach-Zehnder interferometer (μIMZI) is an optical sensing structure fabricated in an optical fiber. Its design allows for refractive index sensing of liquid and gas in picoliter volumes, making it suitable for biochemical and medical sensing where measured material is often scarce. The fabricated structures show satisfactory levels of sensitivity, from about 400 nm/RIU in the near-water range of solutions (nD 1.336+/-0.003 RIU) to about 16 000 nm/RIU for solutions in approximate range from nD = 1.35 RIU to nD = 1.4 RIU. The structures were subjected to oxygen plasma, the process which was supposed to modify physical parameters of the structures, i.e., cavity surface wettability and roughness, and in consequence their sensitivity. As a result of the oxygen plasma modification we have observed a improved wettability of the structure surface, what makes it easier to introduce liquid into the cavity and simplifies the measurement process. In the case where the plasma processing is preceded by biological layer deposition, the bottom surface of the structure is smoothed and slightly deepened, causing a shift in the transmission spectrum and change in sensitivity.

Cellulose structure and lignin distribution in normal and compression wood of the Maidenhair tree (Ginkgo biloba L.).

PubMed

Andersson, Seppo; Wang, Yurong; Pönni, Raili; Hänninen, Tuomas; Mononen, Marko; Ren, Haiqing; Serimaa, Ritva; Saranpää, Pekka

2015-04-01

We studied in detail the mean microfibril angle and the width of cellulose crystals from the pith to the bark of a 15-year-old Maidenhair tree (Ginkgo biloba L.). The orientation of cellulose microfibrils with respect to the cell axis and the width and length of cellulose crystallites were determined using X-ray diffraction. Raman microscopy was used to compare the lignin distribution in the cell wall of normal/opposite and compression wood, which was found near the pith. Ginkgo biloba showed a relatively large mean microfibril angle, varying between 19° and 39° in the S2 layer, and the average width of cellulose crystallites was 3.1-3.2 nm. Mild compression wood without any intercellular spaces or helical cavities was observed near the pith. Slit-like bordered pit openings and a heavily lignified S2L layer confirmed the presence of compression wood. Ginkgo biloba showed typical features present in the juvenile wood of conifers. The microfibril angle remained large over the 14 annual rings. The entire stem disc, with a diameter of 18 cm, was considered to consist of juvenile wood. The properties of juvenile and compression wood as well as the cellulose orientation and crystalline width indicate that the wood formation of G. biloba is similar to that of modern conifers. © 2015 Institute of Botany, Chinese Academy of Sciences.

[Effects of crop tree release on stand growth and stand structure of Cunninghamia lanceolata plantation].

PubMed

Wu, Jian-qiang; Wang, Yi-xiang; Yang, Yi; Zhu, Ting-ting; Zhu, Xu-dan

2015-02-01

Crop trees were selected in a 26-year-old even-aged Cunninghamia lanceolata plantation in Lin' an, and compared in plots that were released and unreleased to examine growth and structure responses for 3 years after thinning. Crop tree release significantly increased the mean increments of diameter and volume of individual tree by 1.30 and 1.25 times relative to trees in control stands, respectively. The increments of diameter and volume of crop trees were significantly higher than those of general trees in thinning plots, crop trees and general trees in control plots, which suggested that the responses from different tree types to crop tree release treatment were different. Crop tree release increased the average distances of crop trees to the nearest neighboring trees, reducing competition among crop trees by about 68.2%. 3-year stand volume increment for thinning stands had no significant difference with that of control stands although the number of trees was only 81.5% of the control. Crop trees in thinned plots with diameters over than 14 cm reached 18.0% over 3 years, compared with 12.0% for trees without thinning, suggesting that crop tree release benefited the larger individual trees. The pattern of tree locations in thinning plots tended to be random, complying with the rule that tree distribution pattern changes with growth. Crop tree release in C. lanceolata plantation not only promoted the stand growth, but also optimized the stand structure, benefiting crop trees sustained rapid growth and larger diameter trees production.

Self-determined shapes and velocities of giant near-zero drag gas cavities

PubMed Central

Vakarelski, Ivan U.; Klaseboer, Evert; Jetly, Aditya; Mansoor, Mohammad M.; Aguirre-Pablo, Andres A.; Chan, Derek Y. C.; Thoroddsen, Sigurdur T.

2017-01-01

Minimizing the retarding force on a solid moving in liquid is the canonical problem in the quest for energy saving by friction and drag reduction. For an ideal object that cannot sustain any shear stress on its surface, theory predicts that drag force will fall to zero as its speed becomes large. However, experimental verification of this prediction has been challenging. We report the construction of a class of self-determined streamlined structures with this free-slip surface, made up of a teardrop-shaped giant gas cavity that completely encloses a metal sphere. This stable gas cavity is formed around the sphere as it plunges at a sufficiently high speed into the liquid in a deep tank, provided that the sphere is either heated initially to above the Leidenfrost temperature of the liquid or rendered superhydrophobic in water at room temperature. These sphere-in-cavity structures have residual drag coefficients that are typically less than 110 those of solid objects of the same dimensions, which indicates that they experienced very small drag forces. The self-determined shapes of the gas cavities are shown to be consistent with the Bernoulli equation of potential flow applied on the cavity surface. The cavity fall velocity is not arbitrary but is uniquely predicted by the sphere density and cavity volume, so larger cavities have higher characteristic velocities. PMID:28913434

Clustering Tree-structured Data on Manifold

PubMed Central

Lu, Na; Miao, Hongyu

2016-01-01

Tree-structured data usually contain both topological and geometrical information, and are necessarily considered on manifold instead of Euclidean space for appropriate data parameterization and analysis. In this study, we propose a novel tree-structured data parameterization, called Topology-Attribute matrix (T-A matrix), so the data clustering task can be conducted on matrix manifold. We incorporate the structure constraints embedded in data into the non-negative matrix factorization method to determine meta-trees from the T-A matrix, and the signature vector of each single tree can then be extracted by meta-tree decomposition. The meta-tree space turns out to be a cone space, in which we explore the distance metric and implement the clustering algorithm based on the concepts like Fréchet mean. Finally, the T-A matrix based clustering (TAMBAC) framework is evaluated and compared using both simulated data and real retinal images to illus trate its efficiency and accuracy. PMID:26660696

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase from Shewanella oneidensis at 1.6 angstrom: Identification of Farnesyl pyrophosphate Trapped in a Hydrophobic Cavity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ni, Shuisong; Robinson, Howard; Marsing, Gregory C.

2004-11-01

1. Introduction Enzymes in the non-mevalonate pathway for isoprenoid synthesis have gained recent attention because of their potential value as targets for antibiotic drug development. 2C-methyl-D-erythritol-2,4 cyclophosphate (MECDP) synthase is the fifth enzyme in the seven enzyme non-mevalonate pathway for synthesis of isopentenyl diphosphate. Four groups have published structures of MECDP synthase at resolutions varying from 1.6Å to 2.8Å, either in the presence or absence of substrate from Escherichia coli (Richard et al., 2002; Kemp et al., 2002; Steinbacher et al., 2002) or from Thermus thermophilus (Kishida et al., 2003). Among these structures, the protein always exists as a homotrimermore » either with a crystallographic or a non-crystallographic three-fold symmetry axis and an active site formed in a cleft between adjacent monomers. While the overall shape of the proteins is highly similar among these structures, each of the four reported structures contain different combinations of metal ions in the active site including a Zn2+ ion only (Steinbacher et al., 2002), a Mn2+ ion only (Richard et al., 2002), Zn2+ and Mn2+ ions (Kemp et al., 2002) or two Mg2+ ions (Kishida et al., 2003). Furthermore, two of the structures are reported to contain a hydrophobic channel along the three-fold symmetry axis that is capped by a cluster of three arginine side chains (one from each monomer) at one end of the cavity and a cluster of three glutamic acid side chains (one from each monomer) at the other side of the cavity. In a 1.8Å resolution structure, Kemp et al. (2002) reported a sulfate ion coordinated to the arginine cap and solvent trapped in a hydrophobic cavity. In a lower 2.8Å resolution structure, Richard et al. (2002) concluded that geranyl diphosphate, GPP, was most likely trapped by the arginine cap and hydrophobic cavity (Richard et al., 2002), however, the low resolution of the data together with the presence of the crystallographic symmetry axis prohibited a definitive analysis of the identity and mode of binding of the bound molecule. Kishida et al. (2003) reported that no cavity existed in a 1.6Å structure of the SO3437 homolog from Thermus thermophilus, presumably due to tighter packing of the protein from the thermophilic organism. Steinbacher et al. (2002) make no description of a hydrophobic cavity in a lower resolution (2.5-3.2Å) of the Escherichia coli protein. Here, we report a high-resolution (1.6Å) structure of MECDP synthase from Shewanella oneidensis in the absence of substrate in the active site. We provide unambiguous data that confirms the presence of Zn2+ in one of the metal binding sites and observe what appears to be farnesyl diphosphate (FPP) bound in the hydrophobic cavity along the non-crystallographic three-fold symmetry axis of the homotrimer. The high-resolution structure clarifies the mode of binding of the pyrophosphate of FPP in the arginine cluster that caps the hydrophobic cavity.« less

Thermal Protection System Cavity Heating for Simplified and Actual Geometries Using Computational Fluid Dynamics Simulations with Unstructured Grids

NASA Technical Reports Server (NTRS)

McCloud, Peter L.

2010-01-01

Thermal Protection System (TPS) Cavity Heating is predicted using Computational Fluid Dynamics (CFD) on unstructured grids for both simplified cavities and actual cavity geometries. Validation was performed using comparisons to wind tunnel experimental results and CFD predictions using structured grids. Full-scale predictions were made for simplified and actual geometry configurations on the Space Shuttle Orbiter in a mission support timeframe.

A robotic vision system to measure tree traits

USDA-ARS?s Scientific Manuscript database

The autonomous measurement of tree traits, such as branching structure, branch diameters, branch lengths, and branch angles, is required for tasks such as robotic pruning of trees as well as structural phenotyping. We propose a robotic vision system called the Robotic System for Tree Shape Estimati...

Porous electrode apparatus for electrodeposition of detailed metal structures or microelectronic interconnections

DOEpatents

Griffiths, Stewart K.; Nilson, Robert H.; Hruby, Jill M.

2002-01-01

An apparatus and procedure for performing microfabrication of detailed metal structures by electroforming metal deposits within small cavities. Two primary areas of application are: the LIGA process which manufactures complex three-dimensional metal parts and the damascene process used for electroplating line and via interconnections of microelectronic devices. A porous electrode held in contact or in close proximity with a plating substrate or mold top to ensure one-dimensional and uniform current flow into all mold cavities is used. Electrolyte is pumped over the exposed surface of the porous electrode to ensure uniform ion concentrations at this external surface. The porous electrode prevents electrolyte circulation within individual mold cavities, avoiding preferential enhancement of ion transport in cavities having favorable geometries. Both current flow and ion transport are one-dimensional and identical in all mold cavities, so all metal deposits grow at the same rate eliminating nonuniformities of the prior art.

Visible light surface emitting semiconductor laser

DOEpatents

Olbright, Gregory R.; Jewell, Jack L.

1993-01-01

A vertical-cavity surface-emitting laser is disclosed comprising a laser cavity sandwiched between two distributed Bragg reflectors. The laser cavity comprises a pair of spacer layers surrounding one or more active, optically emitting quantum-well layers having a bandgap in the visible which serve as the active optically emitting material of the device. The thickness of the laser cavity is m .lambda./2n.sub.eff where m is an integer, .lambda. is the free-space wavelength of the laser radiation and n.sub.eff is the effective index of refraction of the cavity. Electrical pumping of the laser is achieved by heavily doping the bottom mirror and substrate to one conductivity-type and heavily doping regions of the upper mirror with the opposite conductivity type to form a diode structure and applying a suitable voltage to the diode structure. Specific embodiments of the invention for generating red, green, and blue radiation are described.

Traveling wave electrode design of electro-optically modulated coupled-cavity surface-emitting lasers.

PubMed

Zujewski, Mateusz; Thienpont, Hugo; Panajotov, Krassimir

2012-11-19

We present a novel design of an electro-optically modulated coupled-cavity vertical-cavity surface-emitting laser (CC-VCSEL) with traveling wave electrodes of the modulator cavity, which allows to overcome the RC time constant of a traditional lumped electrode structures. The CC-VCSEL optical design is based on longitudinal mode switching which has recently experimentally demonstrated a record modulation speed. We carry out segmented transmission line electrical design of the modulator cavity in order to compensate for the low impedance of the modulator section and to match the 50 Ω electrical network. We have optimized two types of highly efficient modulator structures reaching -3 dB electrical cut-off frequency of f(cut-off) = 330 GHz with maximum reflection of -22 dB in the range from f(LF) = 100 MHz to f(cut-off) and 77 - 89% modulation efficiency.

Acousto-optical interaction of surface acoustic and optical waves in a two-dimensional phoxonic crystal hetero-structure cavity.

PubMed

Ma, Tian-Xue; Zou, Kui; Wang, Yue-Sheng; Zhang, Chuanzeng; Su, Xiao-Xing

2014-11-17

Phoxonic crystal is a promising material for manipulating sound and light simultaneously. In this paper, we theoretically demonstrate the propagation of acoustic and optical waves along the truncated surface of a two-dimensional square-latticed phoxonic crystal. Further, a phoxonic crystal hetero-structure cavity is proposed, which can simultaneously confine surface acoustic and optical waves. The interface motion and photoelastic effects are taken into account in the acousto-optical coupling. The results show obvious shifts in eigenfrequencies of the photonic cavity modes induced by different phononic cavity modes. The symmetry of the phononic cavity modes plays a more important role in the single-phonon exchange process than in the case of the multi-phonon exchange. Under the same deformation, the frequency shift of the photonic transverse electric mode is larger than that of the transverse magnetic mode.

Compact photonic crystal circulator with flat-top transmission band created by cascading magneto-optical resonance cavities.

PubMed

Wang, Qiong; Ouyang, Zhengbiao; Lin, Mi; Liu, Qiang

2015-11-20

A new type of compact three-port circulator with flat-top transmission band (FTTB) in a two-dimensional photonic crystal has been proposed, through coupling the cascaded magneto-optical resonance cavities to waveguides. The coupled-mode theory is applied to investigate the coupled structure and analyze the condition to achieve FTTB. According to the theoretical analysis, the structure is further optimized to ensure that the condition for achieving FTTB can be satisfied for both cavity-cavity coupling and cavity-waveguide coupling. Through the finite-element method, it is demonstrated that the design can realize a high quality, nonreciprocal circulating propagation of waves with an insertion loss of 0.023 dB and an isolation of 23.3 dB, covering a wide range of operation frequency. Such a wideband circulator has potential applications in large-scale integrated photonic circuits for guiding or isolating harmful optical reflections from load elements.

Efficient multifeature index structures for music data retrieval

NASA Astrophysics Data System (ADS)

Lee, Wegin; Chen, Arbee L. P.

1999-12-01

In this paper, we propose four index structures for music data retrieval. Based on suffix trees, we develop two index structures called combined suffix tree and independent suffix trees. These methods still show shortcomings for some search functions. Hence we develop another index, called Twin Suffix Trees, to overcome these problems. However, the Twin Suffix Trees lack of scalability when the amount of music data becomes large. Therefore we propose the fourth index, called Grid-Twin Suffix Trees, to provide scalability and flexibility for a large amount of music data. For each index, we can use different search functions, like exact search and approximate search, on different music features, like melody, rhythm or both. We compare the performance of the different search functions applied on each index structure by a series of experiments.

High-density percutaneous chronic connector for neural prosthetics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shah, Kedar G.; Bennett, William J.; Pannu, Satinderpall S.

2015-09-22

A high density percutaneous chronic connector, having first and second connector structures each having an array of magnets surrounding a mounting cavity. A first electrical feedthrough array is seated in the mounting cavity of the first connector structure and a second electrical feedthrough array is seated in the mounting cavity of the second connector structure, with a feedthrough interconnect matrix positioned between a top side of the first electrical feedthrough array and a bottom side of the second electrical feedthrough array to electrically connect the first electrical feedthrough array to the second electrical feedthrough array. The two arrays of magnetsmore » are arranged to attract in a first angular position which connects the first and second connector structures together and electrically connects the percutaneously connected device to the external electronics, and to repel in a second angular position to facilitate removal of the second connector structure from the first connector structure.« less

Higher-order mode-based cavity misalignment measurements at the free-electron laser FLASH

NASA Astrophysics Data System (ADS)

Hellert, Thorsten; Baboi, Nicoleta; Shi, Liangliang

2017-12-01

At the Free-Electron Laser in Hamburg (FLASH) and the European X-Ray Free-Electron Laser, superconducting TeV-energy superconducting linear accelerator (TESLA)-type cavities are used for the acceleration of electron bunches, generating intense free-electron laser (FEL) beams. A long rf pulse structure allows one to accelerate long bunch trains, which considerably increases the efficiency of the machine. However, intrabunch-train variations of rf parameters and misalignments of rf structures induce significant trajectory variations that may decrease the FEL performance. The accelerating cavities are housed inside cryomodules, which restricts the ability for direct alignment measurements. In order to determine the transverse cavity position, we use a method based on beam-excited dipole modes in the cavities. We have developed an efficient measurement and signal processing routine and present its application to multiple accelerating modules at FLASH. The measured rms cavity offset agrees with the specification of the TESLA modules. For the first time, the tilt of a TESLA cavity inside a cryomodule is measured. The preliminary result agrees well with the ratio between the offset and angle dependence of the dipole mode which we calculated with eigenmode simulations.

Geometrically induced surface polaritons in planar nanostructured metallic cavities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davids, P. S.; Intravia, F; Dalvit, Diego A.

2014-01-14

We examine the modal structure and dispersion of periodically nanostructured planar metallic cavities within the scattering matrix formulation. By nanostructuring a metallic grating in a planar cavity, artificial surface excitations or spoof plasmon modes are induced with dispersion determined by the periodicity and geometric characteristics of the grating. These spoof surface plasmon modes are shown to give rise to new cavity polaritonic modes at short mirror separations that modify the density of modes in nanostructured cavities. The increased modal density of states form cavity polarirons have a large impact on the fluctuation induced electromagnetic forces and enhanced hear transfer atmore » short separations.« less

Method for accurate growth of vertical-cavity surface-emitting lasers

DOEpatents

Chalmers, Scott A.; Killeen, Kevin P.; Lear, Kevin L.

1995-01-01

We report a method for accurate growth of vertical-cavity surface-emitting lasers (VCSELs). The method uses a single reflectivity spectrum measurement to determine the structure of the partially completed VCSEL at a critical point of growth. This information, along with the extracted growth rates, allows imprecisions in growth parameters to be compensated for during growth of the remaining structure, which can then be completed with very accurate critical dimensions. Using this method, we can now routinely grow lasing VCSELs with Fabry-Perot cavity resonance wavelengths controlled to within 0.5%.

Radio frequency accelerating cavity having slotted irises for damping certain electromagnetic modes

DOEpatents

Palmer, Robert B.

1991-01-01

An accelerating cavity having one or more iris structures mounted therein for strongly damping unwanted frequencies that are generated in the cavity by bunches of particles in a particle beam that is accelerated through the cavity during its operation. Each of the iris structures is characterized by containing a plurality of radial slots therein that extend from the central aperture through the iris member to the perimeter thereof. The outer end of each of the radial slots includes an enlarged portion that is effective to prevent undesired frequencies from being reflected back into the center aperture of the iris member. Waveguide means connect the outer ends of the radial slots to frequency damping means or to a dump or dumps.

Optical microfiber-based photonic crystal cavity

NASA Astrophysics Data System (ADS)

Yu, Yang; Sun, Yi-zhi; Andrews, Steve; Li, Zhi-yuan; Ding, Wei

2016-01-01

Using a focused ion beam milling technique, we fabricate broad stop band (∼10% wide) photonic crystal (PhC) cavities in adiabatically-tapered silica fibers. Abrupt structural design of PhC mirrors efficiently reduces radiation loss, increasing the cavity finesse to ∼7.5. Further experiments and simulations verify that the remaining loss is mainly due to Ga ion implantation. Such a microfiber PhC cavity probably has potentials in many light-matter interaction applications.

Bistable Vertical-Cavity Surface-Emitting Laser. Structures on GaAs and Si Substrates

DTIC Science & Technology

1994-06-01

vertical - cavity surface - emitting lasers ( VCSELs ) [1,5,6 of publications below], fabrication processes to realize low...May 91 through 1 June 94 R&T Number: Contract / Grant Number: N00014-91-J-1952 Contract / Grant Title: Bistable Vertical - Cavity Surface - Emitting Laser ...T.J. Rogers, B.G. Streetman, S.C. Smith, and R.D. Burnham, "Cascadabity of an Optically Iathing Vertical - Cavity Surface - Emitting Laser

A stochastic multiple imputation algorithm for missing covariate data in tree-structured survival analysis.

PubMed

Wallace, Meredith L; Anderson, Stewart J; Mazumdar, Sati

2010-12-20

Missing covariate data present a challenge to tree-structured methodology due to the fact that a single tree model, as opposed to an estimated parameter value, may be desired for use in a clinical setting. To address this problem, we suggest a multiple imputation algorithm that adds draws of stochastic error to a tree-based single imputation method presented by Conversano and Siciliano (Technical Report, University of Naples, 2003). Unlike previously proposed techniques for accommodating missing covariate data in tree-structured analyses, our methodology allows the modeling of complex and nonlinear covariate structures while still resulting in a single tree model. We perform a simulation study to evaluate our stochastic multiple imputation algorithm when covariate data are missing at random and compare it to other currently used methods. Our algorithm is advantageous for identifying the true underlying covariate structure when complex data and larger percentages of missing covariate observations are present. It is competitive with other current methods with respect to prediction accuracy. To illustrate our algorithm, we create a tree-structured survival model for predicting time to treatment response in older, depressed adults. Copyright © 2010 John Wiley & Sons, Ltd.

Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme.

PubMed

Liu, Lijun; Baase, Walter A; Michael, Miya M; Matthews, Brian W

2009-09-22

Both large-to-small and nonpolar-to-polar mutations in the hydrophobic core of T4 lysozyme cause significant loss in stability. By including supplementary stabilizing mutations we constructed a variant that combines the cavity-creating substitution Leu99 --> Ala with the buried charge mutant Met102 --> Glu. Crystal structure determination confirmed that this variant has a large cavity with the side chain of Glu102 located within the cavity wall. The cavity includes a large disk-shaped region plus a bulge. The disk-like region is essentially nonpolar, similar to L99A, while the Glu102 substituent is located in the vicinity of the bulge. Three ordered water molecules bind within this part of the cavity and appear to stabilize the conformation of Glu102. Glu102 has an estimated pKa of about 5.5-6.5, suggesting that it is at least partially charged in the crystal structure. The polar ligands pyridine, phenol and aniline bind within the cavity, and crystal structures of the complexes show one or two water molecules to be retained. Nonpolar ligands of appropriate shape can also bind in the cavity and in some cases exclude all three water molecules. This disrupts the hydrogen-bond network and causes the Glu102 side chain to move away from the ligand by up to 0.8 A where it remains buried in a completely nonpolar environment. Isothermal titration calorimetry revealed that the binding of these compounds stabilizes the protein by 4-6 kcal/mol. For both polar and nonpolar ligands the binding is enthalpically driven. Large negative changes in entropy adversely balance the binding of the polar ligands, whereas entropy has little effect on the nonpolar ligand binding.

Method of using sacrificial materials for fabricating internal cavities in laminated dielectric structures

DOEpatents

Peterson, Kenneth A [Albuquerque, NM

2009-02-24

A method of using sacrificial materials for fabricating internal cavities and channels in laminated dielectric structures, which can be used as dielectric substrates and package mounts for microelectronic and microfluidic devices. A sacrificial mandrel is placed in-between two or more sheets of a deformable dielectric material (e.g., unfired LTCC glass/ceramic dielectric), wherein the sacrificial mandrel is not inserted into a cutout made in any of the sheets. The stack of sheets is laminated together, which deforms the sheet or sheets around the sacrificial mandrel. After lamination, the mandrel is removed, (e.g., during LTCC burnout), thereby creating a hollow internal cavity in the monolithic ceramic structure.

Fluid dynamics in suspension-feeding blackfish.

PubMed

Sanderson, S L; Cech, J J; Patterson, M R

1991-03-15

Measurements of flow patterns and water velocities inside the oral cavity of blackfish (Orthodon microlepidotus), made with a fiberoptic endoscope and thermistor flow probe, revealed that gill-arch structures act in blackfish as barriers that direct particle-laden water to the mucus-covered roof of the oral cavity, where particles are retained. Gill-arch structures have previously been assumed to be the site of particle retention in suspension-feeding fishes. Water does not pass between these structures in blackfish, and they do not serve as filters that separate particles from the water. These results emphasize the importance of directly assessing flow velocity and direction inside the oral cavity of vertebrate suspension feeders, particularly at the level of the filtering elements.

DBR, Sub-wavelength grating, and Photonic crystal slab Fabry-Perot cavity design using phase analysis by FDTD.

PubMed

Kim, Jae Hwan Eric; Chrostowski, Lukas; Bisaillon, Eric; Plant, David V

2007-08-06

We demonstrate a Finite-Difference Time-Domain (FDTD) phase methodology to estimate resonant wavelengths in Fabry-Perot (FP) cavity structures. We validate the phase method in a conventional Vertical-Cavity Surface-Emitting Laser (VCSEL) structure using a transfer-matrix method, and compare results with a FDTD reflectance method. We extend this approach to a Sub-Wavelength Grating (SWG) and a Photonic Crystal (Phc) slab, either of which may replace one of the Distributed Bragg Reflectors (DBRs) in the VCSEL, and predict resonant conditions with varying lithographic parameters. Finally, we compare the resonant tunabilities of three different VCSEL structures, taking quality factors into account.

NbTiN Based SIS Multilayer Structures for SRF Applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Valente, Anne-marie; Eremeev, Grigory; Phillips, H

2013-09-01

For the past three decades, bulk niobium has been the material of choice for SRF cavities applications. RF cavity performance is now approaching the theoretical limit for bulk niobium. For further improvement of RF cavity performance for future accelerator projects, Superconductor Insulator - Superconductor (SIS) multilayer structures (as recently proposed by Alex Gurevich) present the theoretical prospect to reach RF performance beyond bulk Nb, using thinly layered higher-Tc superconductors with enhanced Hc1. Jefferson Lab (JLab) is pursuing this approach with the development of NbTiN and AlN based multilayer SIS structures. This paper presents the results on the characteristics of NbTiNmore » films and the first RF measurements on NbTiN-based multilayer structure on thick Nb films.« less

Frequency-independent radiation modes of interior sound radiation: An analytical study

NASA Astrophysics Data System (ADS)

Hesse, C.; Vivar Perez, J. M.; Sinapius, M.

2017-03-01

Global active control methods of sound radiation into acoustic cavities necessitate the formulation of the interior sound field in terms of the surrounding structural velocity. This paper proposes an efficient approach to do this by presenting an analytical method to describe the radiation modes of interior sound radiation. The method requires no knowledge of the structural modal properties, which are often difficult to obtain in control applications. The procedure is exemplified for two generic systems of fluid-structure interaction, namely a rectangular plate coupled to a cuboid cavity and a hollow cylinder with the fluid in its enclosed cavity. The radiation modes are described as a subset of the acoustic eigenvectors on the structural-acoustic interface. For the two studied systems, they are therefore independent of frequency.

Nest-site selection in the acorn woodpecker

USGS Publications Warehouse

Hooge, P.N.; Stanback, M.T.; Koenig, Walter D.

1999-01-01

Acorn Woodpeckers (Melanerpes formicivorus) at Hastings Reservation in central California prefer to nest in dead limbs in large, dead valley oaks (Quercus lobata) and California sycamores (Platanus racemosa) that are also frequently used as acorn storage trees. Based on 232 nest cavities used over an 18-year period, we tested whether preferred or modal nest-site characters were associated with increased reproductive success (the "nest-site quality" hypothesis). We also examined whether more successful nests were likely to experience more favorable microclimatic conditions or to be less accessible to terrestrial predators. We found only equivocal support for the nest-site quality hypothesis: only 1 of 5 preferred characters and 2 of 10 characters exhibiting a clear modality were correlated with higher reproductive success. All three characteristics of nests known or likely to be associated with a more favorable microclimate, and two of five characteristics likely to render nests less accessible to predators, were correlated with higher reproductive success. These results suggest that nest cavities in this population are built in part to take advantage of favorable microclimatic conditions and, to a lesser extent, to reduce access to predators. However, despite benefits of particular nest characteristics, birds frequently nested in apparently suboptimal cavities. We also found a significant relationship between mean group size and the history of occupancy of particular territories and the probability of nest cavities being built in microclimatically favorable live limbs, suggesting that larger groups residing on more stable territories were better able to construct nests with optimal characteristics. This indicates that there may be demographic, as well as ecological, constraints on nest-site selection in this primary cavity nester.

Three-dimensional metamaterials

DOEpatents

Burckel, David Bruce [Albuquerque, NM

2012-06-12

A fabrication method is capable of creating canonical metamaterial structures arrayed in a three-dimensional geometry. The method uses a membrane suspended over a cavity with predefined pattern as a directional evaporation mask. Metallic and/or dielectric material can be evaporated at high vacuum through the patterned membrane to deposit resonator structures on the interior walls of the cavity, thereby providing a unit cell of micron-scale dimension. The method can produce volumetric metamaterial structures comprising layers of such unit cells of resonator structures.

Indexing and retrieving point and region objects

NASA Astrophysics Data System (ADS)

Ibrahim, Azzam T.; Fotouhi, Farshad A.

1996-03-01

R-tree and its variants are examples of spatial data structures for paged-secondary memory. To process a query, these structures require multiple path traversals. In this paper, we present a new image access method, SB+-tree which requires a single path traversal to process a query. Also, SB+-tree will allow commercial databases an access method for spatial objects without a major change, since most commercial databases already support B+-tree as an access method for text data. The SB+-tree can be used for zero and non-zero size data objects. Non-zero size objects are approximated by their minimum bounding rectangles (MBRs). The number of SB+-trees generated is dependent upon the number of dimensions of the approximation of the object. The structure supports efficient spatial operations such as regions-overlap, distance and direction. In this paper, we experimentally and analytically demonstrate the superiority of SB+-tree over R-tree.

Different bees, different needs: how nest-site requirements have shaped the decision-making processes in homeless honeybees (Apis spp.).

PubMed

Beekman, Madeleine; Oldroyd, Benjamin P

2018-05-19

During reproductive swarming, a honeybee swarm needs to decide on a new nest site and then move to the chosen site collectively. Most studies of swarming and nest-site selection are based on one species, Apis mellifera Natural colonies of A. mellifera live in tree cavities. The quality of the cavity is critical to the survival of a swarm. Other honeybee species nest in the open, and have less strict nest-site requirements, such as the open-nesting dwarf honeybee Apis florea Apis florea builds a nest comprised of a single comb suspended from a twig. For a cavity-nesting species, there is only a limited number of potential nest sites that can be located by a swarm, because suitable sites are scarce. By contrast, for an open-nesting species, there is an abundance of equally suitable twigs. While the decision-making process of cavity-nesting bees is geared towards selecting the best site possible, open-nesting species need to coordinate collective movement towards areas with potential nest sites. Here, we argue that the nest-site selection processes of A. florea and A. mellifera have been shaped by each species' specific nest-site requirements. Both species use the same behavioural algorithm, tuned to allow each species to solve their species-specific problem.This article is part of the theme issue 'Collective movement ecology'. © 2018 The Author(s).

Contents and Structure Atta texana Nest in Summer

Treesearch

John C. Moser

1963-01-01

A large nest of Atta texana (Buckley) in central Louisiana was partially excavated in August 1960. Twelve dormancy, 5 detritus, and 93 fungus-garden cavities were found. Fungus-garden cavities near the surface outnumbered those at lower depths and contained most of the fungus material and brood. Inquilines were most numerous in detritus cavities....

Large grain cavities from pure niobium ingot

DOEpatents

Myneni, Ganapati Rao [Yorktown, VA; Kneisel, Peter [Williamsburg, VA; Cameiro, Tadeu [McMurray, PA

2012-03-06

Niobium cavities are fabricated by the drawing and ironing of as cast niobium ingot slices rather than from cold rolled niobium sheet. This method results in the production of niobium cavities having a minimum of grain boundaries at a significantly reduced cost as compared to the production of such structures from cold rolled sheet.

Optoelectronic Materials Center

DTIC Science & Technology

1991-06-11

surface - emitting GaAs/AIGaAs vertical - cavity laser (TJ- VCSEL ) incorporating wavelength-resonant...multi-quantum well, vertical cavity surface - emitted laser . This structure consists entirely of undoped epilayers, thus simplifying the problems of... cavity surface - emitting lasers ( VCSELs ) for doubling and for parallel optical data processing. Progress - GaAIAs/GaAs and InGaAs/GaAs RPG- VCSEL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kant, Deepender, E-mail: dkc@ceeri.ernet.in; Joshi, L. M.; Janyani, Vijay

The klystron is a well-known microwave amplifier which uses kinetic energy of an electron beam for amplification of the RF signal. There are some limitations of conventional single beam klystron such as high operating voltage, low efficiency and bulky size at higher power levels, which are very effectively handled in Multi Beam Klystron (MBK) that uses multiple low purveyance electron beams for RF interaction. Each beam propagates along its individual transit path through a resonant cavity structure. Multi-Beam klystron cavity design is a critical task due to asymmetric cavity structure and can be simulated by 3D code only. The presentmore » paper shall discuss the design of multi beam RF cavities for klystrons operating at 2856 MHz (S-band) and 5 GHz (C-band) respectively. The design approach uses some scaling laws for finding the electron beam parameters of the multi beam device from their single beam counter parts. The scaled beam parameters are then used for finding the design parameters of the multi beam cavities. Design of the desired multi beam cavity can be optimized through iterative simulations in CST Microwave Studio.« less

Observations of pockmark flow structure in Belfast Bay, Maine, Part 2: evidence for cavity flow

USGS Publications Warehouse

Fandel, Christina L.; Lippmann, Thomas C.; Foster, Diane L.; Brothers, Laura L.

2017-01-01

Pockmark flow circulation patterns were investigated through current measurements along the rim and center of two pockmarks in Belfast Bay, Maine. Observed time-varying current profiles have a complex vertical and directional structure that rotates significantly with depth and is strongly dependent on the phase of the tide. Observations of the vertical profiles of horizontal velocities in relation to relative geometric parameters of the pockmark are consistent with circulation patterns described qualitatively by cavity flow models (Ashcroft and Zhang 2005). The time-mean behavior of the shear layer is typically used to characterize cavity flow, and was estimated using vorticity thickness to quantify the growth rate of the shear layer horizontally across the pockmark. Estimated positive vorticity thickness spreading rates are consistent with cavity flow predictions, and occur at largely different rates between the two pockmarks. Previously modeled flow (Brothers et al. 2011) and laboratory measurements (Pau et al. 2014) over pockmarks of similar geometry to those examined herein are also qualitatively consistent with cavity flow circulation, suggesting that cavity flow may be a good first-order flow model for pockmarks in general.

Mechanism of 150-cavity formation in influenza neuraminidase

PubMed Central

Amaro, Rommie E.; Swift, Robert V.; Votapka, Lane; Li, Wilfred W.; Walker, Ross C.; Bush, Robin M.

2011-01-01

The recently discovered 150-cavity in the active site of group-1 influenza A neuraminidase (NA) proteins provides a target for rational structure-based drug development to counter the increasing frequency of antiviral resistance in influenza. Surprisingly, the 2009 H1N1 pandemic virus (09N1) neuramidase was crystalized without the 150-cavity characteristic of group-1 NAs. Here we demonstrate, through a total sum of 1.6 μs of biophysical simulations, that 09N1 NA exists in solution preferentially with an open 150-cavity. Comparison with simulations using avian N1, human N2 and 09N1 with a I149V mutation and an extensive bioinformatics analysis suggests that the conservation of a key salt bridge is crucial in the stabilization of the 150-cavity across both subtypes. This result provides an atomic-level structural understanding of the recent finding that antiviral compounds designed to take advantage of contacts in the 150-cavity can inactivate both 2009 H1N1 pandemic and avian H5N1 viruses. PMID:21750542

Category of trees in representation theory of quantum algebras

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moskaliuk, N. M.; Moskaliuk, S. S., E-mail: mss@bitp.kiev.ua

2013-10-15

New applications of categorical methods are connected with new additional structures on categories. One of such structures in representation theory of quantum algebras, the category of Kuznetsov-Smorodinsky-Vilenkin-Smirnov (KSVS) trees, is constructed, whose objects are finite rooted KSVS trees and morphisms generated by the transition from a KSVS tree to another one.

Designing new classes of high-power, high-brightness VECSELs

NASA Astrophysics Data System (ADS)

Moloney, J. V.; Zakharian, A. R.; Hader, J.; Koch, Stephan W.

2005-10-01

Optically-pumped vertical external cavity semiconductor lasers offer the exciting possibility of designing kW-class solid state lasers that provide significant advantages over their doped YAG, thin-disk YAG and fiber counterparts. The basic VECSEL/OPSL (optically-pumped semiconductor laser) structure consists of a very thin (approximately 6 micron thick) active mirror consisting of a DBR high-reflectivity stack followed by a multiple quantum well resonant periodic (RPG) structure. An external mirror (reflectivity typically between 94%-98%) provides conventional optical feedback to the active semiconductor mirror chip. The "cold" cavity needs to be designed to take into account the semiconductor sub-cavity resonance shift with temperature and, importantly, the more rapid shift of the semiconductor material gain peak with temperature. Thermal management proves critical in optimizing the device for serious power scaling. We will describe a closed-loop procedure that begins with a design of the semiconductor active epi structure. This feeds into the sub-cavity optimization, optical and thermal transport within the active structure and thermal transport though the various heat sinking elements. Novel schemes for power scaling beyond current record performances will be discussed.

Temporal complexity in emission from Anderson localized lasers

NASA Astrophysics Data System (ADS)

Kumar, Randhir; Balasubrahmaniyam, M.; Alee, K. Shadak; Mujumdar, Sushil

2017-12-01

Anderson localization lasers exploit resonant cavities formed due to structural disorder. The inherent randomness in the structure of these cavities realizes a probability distribution in all cavity parameters such as quality factors, mode volumes, mode structures, and so on, implying resultant statistical fluctuations in the temporal behavior. Here we provide direct experimental measurements of temporal width distributions of Anderson localization lasing pulses in intrinsically and extrinsically disordered coupled-microresonator arrays. We first illustrate signature exponential decays in the spatial intensity distributions of the lasing modes that quantify their localized character, and then measure the temporal width distributions of the pulsed emission over several configurations. We observe a dependence of temporal widths on the disorder strength, wherein the widths show a single-peaked, left-skewed distribution in extrinsic disorder and a dual-peaked distribution in intrinsic disorder. We propose a model based on coupled rate equations for an emitter and an Anderson cavity with a random mode structure, which gives excellent quantitative and qualitative agreement with the experimental observations. The experimental and theoretical analyses bring to the fore the temporal complexity in Anderson-localization-based lasing systems.

Sound transmission through a microperforated-panel structure with subdivided air cavities.

PubMed

Toyoda, Masahiro; Takahashi, Daiji

2008-12-01

The absorption characteristics of a microperforated-panel (MPP) absorber have been widely investigated, and MPPs are recognized as a next-generation absorbing material due to their fiber-free nature and attractive appearance. Herein, further possibilities of MPPs are investigated theoretically from a sound transmission viewpoint. Employing an analytical model composed of a typical MPP and a back wall with an infinite extent, transmission loss through the structure is obtained. Although MPP structures generally have great potential for sound absorption, an improvement in the transmission loss at midfrequencies, which is important for architectural sound insulation, is not sufficient when using a backing cavity alone. Hence, to improve transmission loss at midfrequencies, an air-cavity-subdivision technique is applied to MPP structures. By subdividing the air cavity with partitions, each cell can create a local one-dimensional sound field as well as lead to a normal incidence into the apertures, which is the most effective condition for Helmholtz-type resonance absorption. Moreover, by providing the same motion as the back wall to the MPP, the sound-insulation performance can be further improved at midfrequencies.

Genetic Diversity in Nannotrigona testaceicornis (Hymenoptera: Apidae) Aggregations in Southeastern Brazil

PubMed Central

Fonseca, A. S.; Oliveira, E.J.F.; Freitas, G.S.; Assis, A.F.; Souza, C.C.M.; Contel, E.P.B.; Soares, A.E.E.

2017-01-01

The Meliponini, also known as stingless bees, are distributed in tropical and subtropical areas of the world and plays an essential role in pollinating many wild plants and crops These bees can build nests in cavities of trees or walls, underground or in associations with ants or termites; interestingly, these nests are sometimes found in aggregations. In order to assess the genetic diversity and structure in aggregates of Nannotrigona testaceicornis (Lepeletier), samples of this species were collected from six aggregations and genetically analyzed for eight specific microsatellite loci. We observed in this analysis that the mean genetic diversity value among aggregations was 0.354, and the mean expected and observed heterozygosity values was 0.414 and 0.283, respectively. The statistically significant Fis value indicated an observed heterozygosity lower than the expected heterozygosity in all loci studied resulting in high homozygosis level in these populations. In addition, the low number of private alleles observed reinforces the absence of structuring that is seen in the aggregates. These results can provide relevant information about genetic diversity in aggregations of N. testaceicornis and contribute to the management and conservation of these bees’ species that are critical for the pollination process. PMID:28130454

Diagnosing the Magnetic Field Structure of a Coronal Cavity Observed during the 2017 Total Solar Eclipse

NASA Astrophysics Data System (ADS)

Chen, Yajie; Tian, Hui; Su, Yingna; Qu, Zhongquan; Deng, Linhua; Jibben, Patricia R.; Yang, Zihao; Zhang, Jingwen; Samanta, Tanmoy; He, Jiansen; Wang, Linghua; Zhu, Yingjie; Zhong, Yue; Liang, Yu

2018-03-01

We present an investigation of a coronal cavity observed above the western limb in the coronal red line Fe X 6374 Å using a telescope of Peking University and in the green line Fe XIV 5303 Å using a telescope of Yunnan Observatories, Chinese Academy of Sciences, during the total solar eclipse on 2017 August 21. A series of magnetic field models is constructed based on the magnetograms taken by the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory (SDO) one week before the eclipse. The model field lines are then compared with coronal structures seen in images taken by the Atmospheric Imaging Assembly on board SDO and in our coronal red line images. The best-fit model consists of a flux rope with a twist angle of 3.1π, which is consistent with the most probable value of the total twist angle of interplanetary flux ropes observed at 1 au. Linear polarization of the Fe XIII 10747 Å line calculated from this model shows a “lagomorphic” signature that is also observed by the Coronal Multichannel Polarimeter of the High Altitude Observatory. We also find a ring-shaped structure in the line-of-sight velocity of Fe XIII 10747 Å, which implies hot plasma flows along a helical magnetic field structure, in the cavity. These results suggest that the magnetic structure of the cavity is a highly twisted flux rope, which may erupt eventually. The temperature structure of the cavity has also been investigated using the intensity ratio of Fe XIII 10747 Å and Fe X 6374 Å.

The structure of tropical forests and sphere packings

PubMed Central

Jahn, Markus Wilhelm; Dobner, Hans-Jürgen; Wiegand, Thorsten; Huth, Andreas

2015-01-01

The search for simple principles underlying the complex architecture of ecological communities such as forests still challenges ecological theorists. We use tree diameter distributions—fundamental for deriving other forest attributes—to describe the structure of tropical forests. Here we argue that tree diameter distributions of natural tropical forests can be explained by stochastic packing of tree crowns representing a forest crown packing system: a method usually used in physics or chemistry. We demonstrate that tree diameter distributions emerge accurately from a surprisingly simple set of principles that include site-specific tree allometries, random placement of trees, competition for space, and mortality. The simple static model also successfully predicted the canopy structure, revealing that most trees in our two studied forests grow up to 30–50 m in height and that the highest packing density of about 60% is reached between the 25- and 40-m height layer. Our approach is an important step toward identifying a minimal set of processes responsible for generating the spatial structure of tropical forests. PMID:26598678

Shade tree spatial structure and pod production explain frosty pod rot intensity in cacao agroforests, Costa Rica.

PubMed

Gidoin, Cynthia; Avelino, Jacques; Deheuvels, Olivier; Cilas, Christian; Bieng, Marie Ange Ngo

2014-03-01

Vegetation composition and plant spatial structure affect disease intensity through resource and microclimatic variation effects. The aim of this study was to evaluate the independent effect and relative importance of host composition and plant spatial structure variables in explaining disease intensity at the plot scale. For that purpose, frosty pod rot intensity, a disease caused by Moniliophthora roreri on cacao pods, was monitored in 36 cacao agroforests in Costa Rica in order to assess the vegetation composition and spatial structure variables conducive to the disease. Hierarchical partitioning was used to identify the most causal factors. Firstly, pod production, cacao tree density and shade tree spatial structure had significant independent effects on disease intensity. In our case study, the amount of susceptible tissue was the most relevant host composition variable for explaining disease intensity by resource dilution. Indeed, cacao tree density probably affected disease intensity more by the creation of self-shading rather than by host dilution. Lastly, only regularly distributed forest trees, and not aggregated or randomly distributed forest trees, reduced disease intensity in comparison to plots with a low forest tree density. A regular spatial structure is probably crucial to the creation of moderate and uniform shade as recommended for frosty pod rot management. As pod production is an important service expected from these agroforests, shade tree spatial structure may be a lever for integrated management of frosty pod rot in cacao agroforests.

High brightness microwave lamp

DOEpatents

Kirkpatrick, Douglas A.; Dolan, James T.; MacLennan, Donald A.; Turner, Brian P.; Simpson, James E.

2003-09-09

An electrodeless microwave discharge lamp includes a source of microwave energy, a microwave cavity, a structure configured to transmit the microwave energy from the source to the microwave cavity, a bulb disposed within the microwave cavity, the bulb including a discharge forming fill which emits light when excited by the microwave energy, and a reflector disposed within the microwave cavity, wherein the reflector defines a reflective cavity which encompasses the bulb within its volume and has an inside surface area which is sufficiently less than an inside surface area of the microwave cavity. A portion of the reflector may define a light emitting aperture which extends from a position closely spaced to the bulb to a light transmissive end of the microwave cavity. Preferably, at least a portion of the reflector is spaced from a wall of the microwave cavity. The lamp may be substantially sealed from environmental contamination. The cavity may include a dielectric material is a sufficient amount to require a reduction in the size of the cavity to support the desired resonant mode.

Turbine blade with tuned damping structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Campbell, Christian X.; Messmann, Stephen J.

2015-09-01

A turbine blade is provided comprising: a root; an airfoil comprising an external wall extending radially from the root and having a radially outermost portion; and a damping structure. The external wall may comprise first and second side walls joined together to define an inner cavity of the airfoil. The damping structure may be positioned within the airfoil inner cavity and coupled to the airfoil so as to define a tuned mass damper.

Analysis of Substrate Access to Active Sites in Bacterial Multicomponent Monooxygenase Hydroxylases: X-ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase from Pseudomonas sp. OX1†,‡

PubMed Central

McCormick, Michael S.; Lippard, Stephen J.

2011-01-01

In all structurally characterized bacterial multicomponent monooxygenase (BMM) hydroxylase proteins, a series of hydrophobic cavities in the α-subunit trace a conserved path from the protein exterior to the carboxylate-bridged diiron active site. The present study examines these cavities as a potential route for dioxygen transport to the active site by crystallographic characterization of a xenon-pressurized sample of the hydroxylase component of phenol hydroxylase from Pseudomonas sp. OX1. Computational analyses of the hydrophobic cavities in the hydroxylase α-subunits of phenol hydroxylase (PHH), toluene/o-xylene monooxygenase (ToMOH), and soluble methane monooxygenase (sMMOH) are also presented. The results, together with previous findings from crystallographic studies of xenon-pressurized sMMO hydroxylase, clearly identify the propensity for these cavities to bind hydrophobic gas molecules in the protein interior. This proposed functional role is supported by recent stopped flow kinetic studies of ToMOH variants (Song, et al., 2011). In addition to information about the Xe sites, the structure determination revealed significantly reduced regulatory protein binding to the hydroxylase in comparison to the previously reported structure of PHH, as well as the presence of a newly identified metal binding site in the α-subunit that adopts a linear coordination environment consistent with Cu(I), and a glycerol molecule bound to Fe1 in a fashion that is unique among hydrocarbon-diiron site adducts reported to date in BMM hydroxylase structures. Finally, a comparative analysis of the α-subunit structures of MMOH, ToMOH, and PHH details proposed routes for the other three BMM substrates, the hydrocarbon, electrons, and protons, comprising cavities, channels, hydrogen-bonding networks, and pores in the structures of their α-subunits. PMID:22136180

Dust Radiative Transfer Modeling of the Infrared Ring around the Magnetar SGR 1900+14

DOE Office of Scientific and Technical Information (OSTI.GOV)

Natale, G.; Rea, N.; Torres, D. F.

2017-03-01

A peculiar infrared ring-like structure was discovered by Spitzer around the strongly magnetized neutron star SGR 1900+14. This infrared (IR) structure was suggested to be due to a dust-free cavity, produced by the Soft Gamma-ray Repeaters (SGRs) Giant Flare occurring in 1998, and kept illuminated by surrounding stars. Using a 3D dust radiative transfer code, we aimed to reproduce the emission morphology and the integrated emission flux of this structure assuming different spatial distributions and densities for the dust, and different positions for the illuminating stars. We found that a dust-free ellipsoidal cavity can reproduce the shape, flux, and spectrummore » of the ring-like IR emission, provided that the illuminating stars are inside the cavity and that the interstellar medium has high gas density ( n {sub H} ∼ 1000 cm{sup −3}). We further constrain the emitting region to have a sharp inner boundary and to be significantly extended in the radial direction, possibly even just a cavity in a smooth molecular cloud. We discuss possible scenarios for the formation of the dustless cavity and the particular geometry that allows it to be IR-bright.« less

Structure of the lutein-binding domain of human StARD3 at 1.74 Å resolution and model of a complex with lutein

DOE Office of Scientific and Technical Information (OSTI.GOV)

Horvath, Martin P., E-mail: martin.horvath@utah.edu; George, Evan W.; Tran, Quang T.

The structure of a START-domain protein known to bind lutein in the human retina is reported to an improved resolution limit. Rigid-body docking demonstrates that at least a portion of lutein must protrude from the large tunnel-like cavity characteristic of this helix-grip protein and suggests a mechanism for lutein binding specificity. A crystal structure of the lutein-binding domain of human StARD3 (StAR-related lipid-transfer protein 3; also known as MLN64) has been refined to 1.74 Å resolution. A previous structure of the same protein determined to 2.2 Å resolution highlighted homology with StARD1 and shared cholesterol-binding character. StARD3 has since beenmore » recognized as a carotenoid-binding protein in the primate retina, where its biochemical function of binding lutein with specificity appears to be well suited to recruit this photoprotective molecule. The current and previous structures correspond closely to each other (r.m.s.d. of 0.25 Å), especially in terms of the helix-grip fold constructed around a solvent-filled cavity. Regions of interest were defined with alternate conformations in the current higher-resolution structure, including Arg351 found within the cavity and Ω1, a loop of four residues found just outside the cavity entrance. Models of the complex with lutein generated by rigid-body docking indicate that one of the ionone rings must protrude outside the cavity, and this insight has implications for molecular interactions with transport proteins and enzymes that act on lutein. Interestingly, models with the ∊-ionone ring characteristic of lutein pointing towards the bottom of the cavity were associated with fewer steric clashes, suggesting that steric complementarity and ligand asymmetry may play a role in discriminating lutein from the other ocular carotenoids zeaxanthin and meso-zeaxanthin, which only have β-ionone rings.« less

Secure Multicast Tree Structure Generation Method for Directed Diffusion Using A* Algorithms

NASA Astrophysics Data System (ADS)

Kim, Jin Myoung; Lee, Hae Young; Cho, Tae Ho

The application of wireless sensor networks to areas such as combat field surveillance, terrorist tracking, and highway traffic monitoring requires secure communication among the sensor nodes within the networks. Logical key hierarchy (LKH) is a tree based key management model which provides secure group communication. When a sensor node is added or evicted from the communication group, LKH updates the group key in order to ensure the security of the communications. In order to efficiently update the group key in directed diffusion, we propose a method for secure multicast tree structure generation, an extension to LKH that reduces the number of re-keying messages by considering the addition and eviction ratios of the history data. For the generation of the proposed key tree structure the A* algorithm is applied, in which the branching factor at each level can take on different value. The experiment results demonstrate the efficiency of the proposed key tree structure against the existing key tree structures of fixed branching factors.

Tree Leaf Bacterial Community Structure and Diversity Differ along a Gradient of Urban Intensity

PubMed Central

Messier, Christian; Kembel, Steven W.

2017-01-01

ABSTRACT Tree leaf-associated microbiota have been studied in natural ecosystems but less so in urban settings, where anthropogenic pressures on trees could impact microbial communities and modify their interaction with their hosts. Additionally, trees act as vectors spreading bacterial cells in the air in urban environments due to the density of microbial cells on aerial plant surfaces. Characterizing tree leaf bacterial communities along an urban gradient is thus key to understand the impact of anthropogenic pressures on urban tree-bacterium interactions and on the overall urban microbiome. In this study, we aimed (i) to characterize phyllosphere bacterial communities of seven tree species in urban environments and (ii) to describe the changes in tree phyllosphere bacterial community structure and diversity along a gradient of increasing urban intensity and at two degrees of tree isolation. Our results indicate that, as anthropogenic pressures increase, urban leaf bacterial communities show a reduction in the abundance of the dominant class in the natural plant microbiome, the Alphaproteobacteria. Our work in the urban environment here reveals that the structures of leaf bacterial communities differ along the gradient of urban intensity. The diversity of phyllosphere microbial communities increases at higher urban intensity, also displaying a greater number and variety of associated indicator taxa than the low and medium urban gradient sites. In conclusion, we find that urban environments influence tree bacterial community composition, and our results suggest that feedback between human activity and plant microbiomes could shape urban microbiomes. IMPORTANCE In natural forests, tree leaf surfaces host diverse bacterial communities whose structure and composition are primarily driven by host species identity. Tree leaf bacterial diversity has also been shown to influence tree community productivity, a key function of terrestrial ecosystems. However, most urban microbiome studies have focused on the built environment, improving our understanding of indoor microbial communities but leaving much to be understood, especially in the nonbuilt microbiome. Here, we provide the first multiple-species comparison of tree phyllosphere bacterial structures and diversity along a gradient of urban intensity. We demonstrate that urban trees possess characteristic bacterial communities that differ from those seen with trees in nonurban environments, with microbial community structure on trees influenced by host species identity but also by the gradient of urban intensity and by the degree of isolation from other trees. Our results suggest that feedback between human activity and plant microbiomes could shape urban microbiomes. PMID:29238751

Tree Leaf Bacterial Community Structure and Diversity Differ along a Gradient of Urban Intensity.

PubMed

Laforest-Lapointe, Isabelle; Messier, Christian; Kembel, Steven W

2017-01-01

Tree leaf-associated microbiota have been studied in natural ecosystems but less so in urban settings, where anthropogenic pressures on trees could impact microbial communities and modify their interaction with their hosts. Additionally, trees act as vectors spreading bacterial cells in the air in urban environments due to the density of microbial cells on aerial plant surfaces. Characterizing tree leaf bacterial communities along an urban gradient is thus key to understand the impact of anthropogenic pressures on urban tree-bacterium interactions and on the overall urban microbiome. In this study, we aimed (i) to characterize phyllosphere bacterial communities of seven tree species in urban environments and (ii) to describe the changes in tree phyllosphere bacterial community structure and diversity along a gradient of increasing urban intensity and at two degrees of tree isolation. Our results indicate that, as anthropogenic pressures increase, urban leaf bacterial communities show a reduction in the abundance of the dominant class in the natural plant microbiome, the Alphaproteobacteria . Our work in the urban environment here reveals that the structures of leaf bacterial communities differ along the gradient of urban intensity. The diversity of phyllosphere microbial communities increases at higher urban intensity, also displaying a greater number and variety of associated indicator taxa than the low and medium urban gradient sites. In conclusion, we find that urban environments influence tree bacterial community composition, and our results suggest that feedback between human activity and plant microbiomes could shape urban microbiomes. IMPORTANCE In natural forests, tree leaf surfaces host diverse bacterial communities whose structure and composition are primarily driven by host species identity. Tree leaf bacterial diversity has also been shown to influence tree community productivity, a key function of terrestrial ecosystems. However, most urban microbiome studies have focused on the built environment, improving our understanding of indoor microbial communities but leaving much to be understood, especially in the nonbuilt microbiome. Here, we provide the first multiple-species comparison of tree phyllosphere bacterial structures and diversity along a gradient of urban intensity. We demonstrate that urban trees possess characteristic bacterial communities that differ from those seen with trees in nonurban environments, with microbial community structure on trees influenced by host species identity but also by the gradient of urban intensity and by the degree of isolation from other trees. Our results suggest that feedback between human activity and plant microbiomes could shape urban microbiomes.

Remnant trees affect species composition but not structure of tropical second-growth forest.

PubMed

Sandor, Manette E; Chazdon, Robin L

2014-01-01

Remnant trees, spared from cutting when tropical forests are cleared for agriculture or grazing, act as nuclei of forest regeneration following field abandonment. Previous studies on remnant trees were primarily conducted in active pasture or old fields abandoned in the previous 2-3 years, and focused on structure and species richness of regenerating forest, but not species composition. Our study is among the first to investigate the effects of remnant trees on neighborhood forest structure, biodiversity, and species composition 20 years post-abandonment. We compared the woody vegetation around individual remnant trees to nearby plots without remnant trees in the same second-growth forests ("control plots"). Forest structure beneath remnant trees did not differ significantly from control plots. Species richness and species diversity were significantly higher around remnant trees. The species composition around remnant trees differed significantly from control plots and more closely resembled the species composition of nearby old-growth forest. The proportion of old-growth specialists and generalists around remnant trees was significantly greater than in control plots. Although previous studies show that remnant trees may initially accelerate secondary forest growth, we found no evidence that they locally affect stem density, basal area, and seedling density at later stages of regrowth. Remnant trees do, however, have a clear effect on the species diversity, composition, and ecological groups of the surrounding woody vegetation, even after 20 years of forest regeneration. To accelerate the return of diversity and old-growth forest species into regrowing forest on abandoned land, landowners should be encouraged to retain remnant trees in agricultural or pastoral fields.

Remnant Trees Affect Species Composition but Not Structure of Tropical Second-Growth Forest

PubMed Central

Sandor, Manette E.; Chazdon, Robin L.

2014-01-01

Remnant trees, spared from cutting when tropical forests are cleared for agriculture or grazing, act as nuclei of forest regeneration following field abandonment. Previous studies on remnant trees were primarily conducted in active pasture or old fields abandoned in the previous 2–3 years, and focused on structure and species richness of regenerating forest, but not species composition. Our study is among the first to investigate the effects of remnant trees on neighborhood forest structure, biodiversity, and species composition 20 years post-abandonment. We compared the woody vegetation around individual remnant trees to nearby plots without remnant trees in the same second-growth forests (“control plots”). Forest structure beneath remnant trees did not differ significantly from control plots. Species richness and species diversity were significantly higher around remnant trees. The species composition around remnant trees differed significantly from control plots and more closely resembled the species composition of nearby old-growth forest. The proportion of old-growth specialists and generalists around remnant trees was significantly greater than in control plots. Although previous studies show that remnant trees may initially accelerate secondary forest growth, we found no evidence that they locally affect stem density, basal area, and seedling density at later stages of regrowth. Remnant trees do, however, have a clear effect on the species diversity, composition, and ecological groups of the surrounding woody vegetation, even after 20 years of forest regeneration. To accelerate the return of diversity and old-growth forest species into regrowing forest on abandoned land, landowners should be encouraged to retain remnant trees in agricultural or pastoral fields. PMID:24454700

Communities of Social Bees (Apidae: Meliponini) in Trap-Nests: the Spatial Dynamics of Reproduction in an Area of Atlantic Forest.

PubMed

Silva, M D; Ramalho, M; Monteiro, D

2014-08-01

As most stingless bee species depend on preexisting cavities, principally tree hollows, nesting site availability may represent an important restriction in the structuring of their forest communities. The present study examined the spatial dynamics of stingless bee communities in an area of Atlantic Forest by evaluating their swarming to trap-nests. The field work was performed in the Michelin Ecological Reserve (MER) on the southeastern coast of the state of Bahia, Brazil. Seven hundred and twenty trap-nests were distributed within two forest habitats in advanced and initial stages of regeneration. The trap-nests were monitored between September 2009 and March 2011. Twenty-five trap-nests were occupied by five bee species, resulting in a capture ratio of 0.035 swarms/trap (approximately 0.14 swarms/ha), corresponding to 10 swarms/year (0.056 swarms/ha/year). According to previous study at MER, the most abundant species in natural nests were also the most common in trap-nests in the two forest habitats examined, with the exception of Melipona scutellaris Latreille. Swarms of higher numbers of species were captured in initial regeneration stage forests than in advanced regeneration stage areas, and differences in species compositions were significant between both habitats (p = 0.03); these apparent differences were not consistent, however, when considering richness (p = 0.14) and total abundance (p = 0.08). The present study suggests the existence of a minimum cavity size threshold of approximately 1 L for most local species of stingless bees and sustains the hypothesis of a mass effect of Tetragonisca angustula Latreille populations from surrounding disturbed habitats on the MER forest community in terms of propagule (swarm) pressure. Examining swarm densities with trap-nests can be a promising technique for comparative analyses of the carrying capacities of forest habitats for stingless bee colonies, as long as size thresholds of cavities for nesting are taken into consideration.

Structural Equation Model Trees

PubMed Central

Brandmaier, Andreas M.; von Oertzen, Timo; McArdle, John J.; Lindenberger, Ulman

2015-01-01

In the behavioral and social sciences, structural equation models (SEMs) have become widely accepted as a modeling tool for the relation between latent and observed variables. SEMs can be seen as a unification of several multivariate analysis techniques. SEM Trees combine the strengths of SEMs and the decision tree paradigm by building tree structures that separate a data set recursively into subsets with significantly different parameter estimates in a SEM. SEM Trees provide means for finding covariates and covariate interactions that predict differences in structural parameters in observed as well as in latent space and facilitate theory-guided exploration of empirical data. We describe the methodology, discuss theoretical and practical implications, and demonstrate applications to a factor model and a linear growth curve model. PMID:22984789

Mapping Forest Structure From Tree Clump And Opening Patterns Across Landscapes With Airborne Lidar To Study Response To Disturbances And Map Habitat

NASA Astrophysics Data System (ADS)

Kane, V. R.; McGaughey, R. J.; Asner, G. P.; Kane, J. T.; Churchill, D.; Vaughn, N.

2016-12-01

Most natural forests are structured as mosaics of tree clumps and openings. These mosaics reflect both the underlying patterns of the biophysical environment and the finer scale patterns of disturbance and regrowth. We have developed methods to quantify and map patterns of tree clumps and openings at scales from within stands to landscapes using airborne LiDAR. While many studies have used LiDAR data to identify individual trees, we also identify clumps as adjacent trees with similar heights within a stand that likely established at a similar time following a disturbance. We characterize openings by both size class and shape complexity. Spatial statistics are used to identify patterns of tree clumps and openings at the local (0.81 ha) scale, and these patterns are then mapped across entire landscapes. We use LiDAR data acquired over Sequoia National Park, California, USA, to show how forest structure varies with patterns of productivity driven by the biophysical environment. We then show how clump and opening patterns vary with different fire histories and how recent drought mortality correlates with different tree clump and opening structural mosaics. We also demonstrate that nesting sites for the California spotted owl, a species of concern, are associated with clumps of large (>32 and especially >48 m) trees but that the surrounding foraging areas consist of a heterogeneous pattern of forest structure. These methods are especially useful for studying clumps of large trees, which dominate above ground forest biomass, and the effects of disturbance on the abundance and pattern of large trees as key forest structures.

Dividers for reduction of aerodynamic drag of vehicles with open cavities

NASA Technical Reports Server (NTRS)

Storms, Bruce L. (Inventor)

2007-01-01

A drag-reduction concept for vehicles with open cavities includes dividing a cavity into smaller adjacent cavities through installation of one or more vertical dividers. The dividers may extend the full depth of the cavity or only partial depth. In either application, the top of the dividers are typically flush with the top of the bed or cargo bay of the vehicle. The dividers may be of any material, but are strong enough for both wind loads and forces encountered during cargo loading/unloading. For partial depth dividers, a structural angle may be desired to increase strength.

BetaCavityWeb: a webserver for molecular voids and channels

PubMed Central

Kim, Jae-Kwan; Cho, Youngsong; Lee, Mokwon; Laskowski, Roman A.; Ryu, Seong Eon; Sugihara, Kokichi; Kim, Deok-Soo

2015-01-01

Molecular cavities, which include voids and channels, are critical for molecular function. We present a webserver, BetaCavityWeb, which computes these cavities for a given molecular structure and a given spherical probe, and reports their geometrical properties: volume, boundary area, buried area, etc. The server's algorithms are based on the Voronoi diagram of atoms and its derivative construct: the beta-complex. The correctness of the computed result and computational efficiency are both mathematically guaranteed. BetaCavityWeb is freely accessible at the Voronoi Diagram Research Center (VDRC) (http://voronoi.hanyang.ac.kr/betacavityweb). PMID:25904629

The Proposal of a Evolutionary Strategy Generating the Data Structures Based on a Horizontal Tree for the Tests

NASA Astrophysics Data System (ADS)

Żukowicz, Marek; Markiewicz, Michał

2016-09-01

The aim of the article is to present a mathematical definition of the object model, that is known in computer science as TreeList and to show application of this model for design evolutionary algorithm, that purpose is to generate structures based on this object. The first chapter introduces the reader to the problem of presenting data using the TreeList object. The second chapter describes the problem of testing data structures based on TreeList. The third one shows a mathematical model of the object TreeList and the parameters, used in determining the utility of structures created through this model and in evolutionary strategy, that generates these structures for testing purposes. The last chapter provides a brief summary and plans for future research related to the algorithm presented in the article.

A hierarchical linear model for tree height prediction.

Treesearch

Vicente J. Monleon

2003-01-01

Measuring tree height is a time-consuming process. Often, tree diameter is measured and height is estimated from a published regression model. Trees used to develop these models are clustered into stands, but this structure is ignored and independence is assumed. In this study, hierarchical linear models that account explicitly for the clustered structure of the data...

Tree crown structure indicators in a natural uneven-aged mixed coniferous forest in northeastern Mexico

Treesearch

Javier Jimenez-Perez; Oscar Aguirre-Calderon; Horst Kramer

2006-01-01

Characterization of tree crown structure provides critical information to assess a variety of ecological conditions for multiple purposes and applications. For biomass growth, for example, tree crowns have basic physiological functions: assimilation, respiration, and transpiration. How tree crowns spatially interact and grow can bring about a seamless landscape of...

Analysis on spectra of hydroacoustic field in sonar cavity of the sandwich elastic wall structure

NASA Astrophysics Data System (ADS)

Xuetao, W.; Rui, H.; Weike, W.

2017-09-01

In this paper, the characteristics of the mechanical self - noise in sonar array cavity are studied by using the elastic flatbed - filled rectangular cavity parameterization model. Firstly, the analytic derivation of the vibration differential equation of the single layer, sandwich elastic wall plate structure and internal fluid coupling is carried out, and the modal method is used to solve it. Finally, the spectral characteristics of the acoustic field of rectangular cavity of different elastic wallboard materials are simulated and analyzed, which provides a theoretical reference for the prediction and control of sonar mechanical self-noise. In this paper, the sandwich board as control inside the dome background noise of a potential means were discussed, the dome background noise of qualitative prediction analysis and control has important theoretical significance.

Radio frequency accelerating cavity having slotted irises for damping certain electromagnetic modes

DOEpatents

Palmer, R.B.

1991-05-21

An accelerating cavity is disclosed having one or more iris structures mounted therein for strongly damping unwanted frequencies that are generated in the cavity by bunches of particles in a particle beam that is accelerated through the cavity during its operation. Each of the iris structures is characterized by containing a plurality of radial slots therein that extend from the central aperture through the iris member to the perimeter thereof. The outer end of each of the radial slots includes an enlarged portion that is effective to prevent undesired frequencies from being reflected back into the center aperture of the iris member. Waveguide means connect the outer ends of the radial slots to frequency damping means or to a dump or dumps. 17 figures.

Feasibility of near-unstable cavities for future gravitational wave detectors

NASA Astrophysics Data System (ADS)

Wang, Haoyu; Dovale-Álvarez, Miguel; Collins, Christopher; Brown, Daniel David; Wang, Mengyao; Mow-Lowry, Conor M.; Han, Sen; Freise, Andreas

2018-01-01

Near-unstable cavities have been proposed as an enabling technology for future gravitational wave detectors, as their compact structure and large beam spots can reduce the coating thermal noise of the interferometer. We present a tabletop experiment investigating the behavior of an optical cavity as it is parametrically pushed to geometrical instability. We report on the observed degeneracies of the cavity's eigenmodes as the cavity becomes unstable and the resonance conditions become hyper-sensitive to mirror surface imperfections. A simple model of the cavity and precise measurements of the resonant frequencies allow us to characterize the stability of the cavity and give an estimate of the mirror astigmatism. The significance of these results for gravitational wave detectors is discussed, and avenues for further research are suggested.

Individual tree crown delineation using localized contour tree method and airborne LiDAR data in coniferous forests

NASA Astrophysics Data System (ADS)

Wu, Bin; Yu, Bailang; Wu, Qiusheng; Huang, Yan; Chen, Zuoqi; Wu, Jianping

2016-10-01

Individual tree crown delineation is of great importance for forest inventory and management. The increasing availability of high-resolution airborne light detection and ranging (LiDAR) data makes it possible to delineate the crown structure of individual trees and deduce their geometric properties with high accuracy. In this study, we developed an automated segmentation method that is able to fully utilize high-resolution LiDAR data for detecting, extracting, and characterizing individual tree crowns with a multitude of geometric and topological properties. The proposed approach captures topological structure of forest and quantifies topological relationships of tree crowns by using a graph theory-based localized contour tree method, and finally segments individual tree crowns by analogy of recognizing hills from a topographic map. This approach consists of five key technical components: (1) derivation of canopy height model from airborne LiDAR data; (2) generation of contours based on the canopy height model; (3) extraction of hierarchical structures of tree crowns using the localized contour tree method; (4) delineation of individual tree crowns by segmenting hierarchical crown structure; and (5) calculation of geometric and topological properties of individual trees. We applied our new method to the Medicine Bow National Forest in the southwest of Laramie, Wyoming and the HJ Andrews Experimental Forest in the central portion of the Cascade Range of Oregon, U.S. The results reveal that the overall accuracy of individual tree crown delineation for the two study areas achieved 94.21% and 75.07%, respectively. Our method holds great potential for segmenting individual tree crowns under various forest conditions. Furthermore, the geometric and topological attributes derived from our method provide comprehensive and essential information for forest management.

Stand-structural effects on Heterobasidion abietinum-related mortality following drought events in Abies pinsapo.

PubMed

Linares, Juan Carlos; Camarero, Jesús Julio; Bowker, Matthew A; Ochoa, Victoria; Carreira, José Antonio

2010-12-01

Climate change may affect tree-pathogen interactions. This possibility has important implications for drought-prone forests, where stand dynamics and disease pathogenicity are especially sensitive to climatic stress. In addition, stand structural attributes including density-dependent tree-to-tree competition may modulate the stands' resistance to drought events and pathogen outbreaks. To assess the effects of stand structure on root-rot-related mortality after severe droughts, we focused on Heterobasidion abietinum mortality in relict Spanish stands of Abies pinsapo, a drought-sensitive fir. We compared stand attributes and tree spatial patterns in three plots with H. abietinum root-rot disease and three plots without root-rot. Point-pattern analyses were used to investigate the scale and extent of mortality patterns and to test hypotheses related to the spread of the disease. Dendrochronology was used to date the year of death and to assess the association between droughts and growth decline. We applied a structural equation modelling approach to test if tree mortality occurs more rapidly than predicted by a simple distance model when trees are subjected to high tree-to-tree competition and following drought events. Contrary to expectations of drought mortality, the effect of precipitation on the year of death was strong and negative, indicating that a period of high precipitation induced an earlier tree death. Competition intensity, related to the size and density of neighbour trees, also induced an earlier tree death. The effect of distance to the disease focus was negligible except in combination with intensive competition. Our results indicate that infected trees have decreased ability to withstand drought stress, and demonstrate that tree-to-tree competition and fungal infection act as predisposing factors of forest decline and mortality.

Ultrathin Organic Solar Cells with a Power Conversion Efficiency of Over ≈13.0%, Based on the Spatial Corrugation of the Metal Electrode-Cathode Fabry-Perot Cavity.

PubMed

In, Sungjun; Park, Namkyoo

2018-04-01

The application of nanophotonic structures for organic solar cells (OSCs) is quite popular and successful, and has led to increased optical absorption, better spectral overlap with solar irradiances, and improved charge collection. Significant improvements in the power conversion efficiency (PCE) have also been reported, exceeding 11%. Nonetheless, with the given material properties of OSCs with low optical absorption, narrow spectrum, short transport length of carriers, and nonuniform photocarrier generations resulting from the nanophotonic structure, the PCE of single-junction OSCs has been stagnant over the past few years, at a barrier of 12%. Here, an ultrathin inverted OSC structure with the highest efficiency of ≈13.0%, while being made from widely used organic materials, is demonstrated. By introducing a smooth spatial corrugation to the vertical plasmonic cavity enclosing the active layer, in-plane propagation modes and hybridized Fabry-Perot cavity modes inside the corrugated cavity are derived to achieve an ultralow Q , uniform coverage of optical absorption, in addition to uniform photocarrier generation and transport. As the first demonstration of ultra-broadband absorption with the introduction of spatial corrugation to the ultrathin metal film electrode-cathode Fabry-Perot cavity, future applications of the same concept in other light-harvesting devices utilizing different materials and structures are expected.

A computational model of the nicotinic acetylcholine binding site

NASA Astrophysics Data System (ADS)

Gálvez-ruano, Enrique; Iriepa-Canalda, Isabel; Morreale, Antonio; Lipkowitz, Kenny B.

1999-01-01

We have derived a model of the nicotinic acetylcholine binding site. This was accomplished by using three known agonists (acetylcholine, nicotine and epibatidine) as templates around which polypeptide side chains, found to be part of the receptor cavity from published molecular biology studies, are allowed to flow freely in molecular dynamics simulations and mold themselves around these templates. The resulting supramolecular complex should thus be a complement, both in terms of steric effects as well as electronic effects, to the agonists and it should be a good estimation of the true receptor cavity structure. The shapes of those minireceptor cavities equilibrated rapidly on the simulation time scale and their structural congruence is very high, implying that a satisfactory model of the nicotinic acetylcholine binding site has been achieved. The computational methodology was internally tested against two rigid and specific antagonists (dihydro-β-erytroidine and erysoidine), that are expected to give rise to a somewhat differently shaped binding site compared to that derived from the agonists. Using these antagonists as templates there were structural reorganizations of the initial receptor cavities leading to distinctly different cavities compared to agonists. This indicates that adequate times and temperatures were used in our computational protocols to achieve equilibrium structures for the agonists. Overall, both minireceptor geometries for agonists and antagonists are similar with the exception of one amino acid (ARG209).

Homologous ligands accommodated by discrete conformations of a buried cavity

PubMed Central

Merski, Matthew; Fischer, Marcus; Balius, Trent E.; Eidam, Oliv; Shoichet, Brian K.

2015-01-01

Conformational change in protein–ligand complexes is widely modeled, but the protein accommodation expected on binding a congeneric series of ligands has received less attention. Given their use in medicinal chemistry, there are surprisingly few substantial series of congeneric ligand complexes in the Protein Data Bank (PDB). Here we determine the structures of eight alkyl benzenes, in single-methylene increases from benzene to n-hexylbenzene, bound to an enclosed cavity in T4 lysozyme. The volume of the apo cavity suffices to accommodate benzene but, even with toluene, larger cavity conformations become observable in the electron density, and over the series two other major conformations are observed. These involve discrete changes in main-chain conformation, expanding the site; few continuous changes in the site are observed. In most structures, two discrete protein conformations are observed simultaneously, and energetic considerations suggest that these conformations are low in energy relative to the ground state. An analysis of 121 lysozyme cavity structures in the PDB finds that these three conformations dominate the previously determined structures, largely modeled in a single conformation. An investigation of the few congeneric series in the PDB suggests that discrete changes are common adaptations to a series of growing ligands. The discrete, but relatively few, conformational states observed here, and their energetic accessibility, may have implications for anticipating protein conformational change in ligand design. PMID:25847998

Homologous ligands accommodated by discrete conformations of a buried cavity.

PubMed

Merski, Matthew; Fischer, Marcus; Balius, Trent E; Eidam, Oliv; Shoichet, Brian K

2015-04-21

Conformational change in protein-ligand complexes is widely modeled, but the protein accommodation expected on binding a congeneric series of ligands has received less attention. Given their use in medicinal chemistry, there are surprisingly few substantial series of congeneric ligand complexes in the Protein Data Bank (PDB). Here we determine the structures of eight alkyl benzenes, in single-methylene increases from benzene to n-hexylbenzene, bound to an enclosed cavity in T4 lysozyme. The volume of the apo cavity suffices to accommodate benzene but, even with toluene, larger cavity conformations become observable in the electron density, and over the series two other major conformations are observed. These involve discrete changes in main-chain conformation, expanding the site; few continuous changes in the site are observed. In most structures, two discrete protein conformations are observed simultaneously, and energetic considerations suggest that these conformations are low in energy relative to the ground state. An analysis of 121 lysozyme cavity structures in the PDB finds that these three conformations dominate the previously determined structures, largely modeled in a single conformation. An investigation of the few congeneric series in the PDB suggests that discrete changes are common adaptations to a series of growing ligands. The discrete, but relatively few, conformational states observed here, and their energetic accessibility, may have implications for anticipating protein conformational change in ligand design.

Real-time observation of fluctuations in a driven-dissipative quantum many-body system undergoing a phase transition

NASA Astrophysics Data System (ADS)

Donner, Tobias

2015-03-01

A Bose-Einstein condensate whose motional degrees of freedom are coupled to a high-finesse optical cavity via a transverse pump beam constitutes a dissipative quantum many-body system with long range interactions. These interactions can induce a structural phase transition from a flat to a density-modulated state. The transverse pump field simultaneously represents a probe of the atomic density via cavity- enhanced Bragg scattering. By spectrally analyzing the light field leaking out of the cavity, we measure non-destructively the dynamic structure factor of the fluctuating atomic density while the system undergoes the phase transition. An observed asymmetry in the dynamic structure factor is attributed to the coupling to dissipative baths. Critical exponents for both sides of the phase transition can be extracted from the data. We further discuss our progress in adding strong short-range interactions to this system, in order to explore Bose-Hubbard physics with cavity-mediated long-range interactions and self-organization in lower dimensions.

Changes in respiratory structure and function during post-diapause development in the alfalfa leafcutting bee, Megachile rotundata

USDA-ARS?s Scientific Manuscript database

Megachile rotundata, the alfalfa leafcutting bee, is a solitary, cavity-nesting bee. M. rotundata develop from eggs laid inside brood cells constructed from leaf pieces and placed in series in an existing cavity. Due to the cavity nesting behavior of M. rotundata, developing bees may experience hyp...

Study of phase-locked diode laser array and DFB/DBR surface emitting laser diode

NASA Astrophysics Data System (ADS)

Hsin, Wei

New types of phased-array and surface-emitting lasers are designed. The importance and approaches (or structures) of different phased array and surface emitting laser diodes are reviewed. The following are described: (1) a large optical cavity channel substrate planar laser array with layer thickness chirping; (2) a vertical cavity surface emitter with distributed feedback (DFB) optical cavity and a transverse junction buried heterostructure; (3) a microcavity distributed Bragg reflector (DBR) surface emitter; and (4) two surface emitting laser structures which utilized lateral current injection schemes to overcome the problems occurring in the vertical injection scheme.

Far-infrared BRDFs and reflectance spectra of candidate SOFIA telescope, cavity, and focal-plane instrument surfaces

NASA Astrophysics Data System (ADS)

Meyer, Allan W.; Smith, Sheldon M.; Koerber, Christopher T.

2000-06-01

The far-infrared reflectance and scattering properties of telescope surfaces, surrounding cavity walls, and surfaces within focal-plane instruments can be significant contributors to background noise. Radiation from sources well off-axis, such as the earth, moon or aircraft engines may be multiply scattered by the cavity walls and/or surface facets of a complex telescope structure. The Non-Specular Reflectometer at NASA Ames Research Center was reactivated and upgraded, and used to measure reflectance and Bi- directional Reflectance Distribution Functions for samples of planned telescope system structural materials and associated surface treatments.

Method for accurate growth of vertical-cavity surface-emitting lasers

DOEpatents

Chalmers, S.A.; Killeen, K.P.; Lear, K.L.

1995-03-14

The authors report a method for accurate growth of vertical-cavity surface-emitting lasers (VCSELs). The method uses a single reflectivity spectrum measurement to determine the structure of the partially completed VCSEL at a critical point of growth. This information, along with the extracted growth rates, allows imprecisions in growth parameters to be compensated for during growth of the remaining structure, which can then be completed with very accurate critical dimensions. Using this method, they can now routinely grow lasing VCSELs with Fabry-Perot cavity resonance wavelengths controlled to within 0.5%. 4 figs.

Cavitation propagation in water under tension

NASA Astrophysics Data System (ADS)

Noblin, Xavier; Yip Cheung Sang, Yann; Pellegrin, Mathieu; Materials and Complex Fluids Team

2012-11-01

Cavitation appears when pressure decreases below vapor pressure, generating vapor bubbles. It can be obtain in dynamical ways (acoustic, hydraulic) but also in quasi-static conditions. This later case is often observed in nature, in trees, or during the ejection of ferns spores. We study the cavitation bubbles nucleation dynamics and its propagation in a confined microfabricated media. This later is an ordered array of microcavities made in hydrogel filled with water. When the system is put into dry air, it dehydrates, water leaves the cavities and tension (negative pressure) builds in the cavities. This can be sustained up to a critical pressure (of order -20 MPa), then cavitation bubbles appear. We follow the dynamics using ultra high speed imaging. Events with several bubbles cavitating in a few microseconds could be observed along neighboring cells, showing a propagation phenomenon that we discuss. ANR CAVISOFT 2010-JCJC-0407 01.

Separator assembly for use in spent nuclear fuel shipping cask

DOEpatents

Bucholz, James A.

1983-01-01

A separator assembly for use in a spent nuclear fuel shipping cask has a honeycomb-type wall structure defining parallel cavities for holding nuclear fuel assemblies. Tubes formed of an effective neutron-absorbing material are embedded in the wall structure around each of the cavities and provide neutron flux traps when filled with water.

Design and analysis of photonic crystal micro-cavity based optical sensor platform

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goyal, Amit Kumar, E-mail: amitgoyal.ceeri@gmail.com; Dutta, Hemant Sankar, E-mail: hemantdutta97@gmail.com; Pal, Suchandan, E-mail: spal@ceeri.ernet.in

2016-04-13

In this paper, the design of a two-dimensional photonic crystal micro-cavity based integrated-optic sensor platform is proposed. The behaviour of designed cavity is analyzed using two-dimensional Finite Difference Time Domain (FDTD) method. The structure is designed by deliberately inserting some defects in a photonic crystal waveguide structure. Proposed structure shows a quality factor (Q) of about 1e5 and the average sensitivity of 500nm/RIU in the wavelength range of 1450 – 1580 nm. Sensing technique is based on the detection of shift in upper-edge cut-off wavelength for a reference signal strength of –10 dB in accordance with the change in refractive index ofmore » analyte.« less

Multispecies Biofilms and Host Responses: “Discriminating the Trees from the Forest”

PubMed Central

Peyyala, R.; Ebersole, J.L.

2014-01-01

Periodontal diseases reflect a tissue destructive process of the hard and soft tissues of the periodontium that are initiated by the accumulation of multispecies bacterial biofilms in the subgingival sulcus. This accumulation, in both quantity and quality of bacteria, results in a chronic immunoinflammatory response of the host to control this noxious challenge, leading to collateral damage of the tissues. As knowledge of the characteristics of the host-bacterial interactions in the oral cavity has expanded, new knowledge has become available on the complexity of the microbial challenge and the repertoire of host responses to this challenge. Recent results from the Human Microbiome Project continue to extend the array of taxa, genera, and species of bacteria that inhabit the multiple niches in the oral cavity; however, there is rather sparse information regarding variations in how host cells discriminate commensal from pathogenic species, as well as how the host response is affected by the 3-dimensional architecture and interbacterial interactions that occur in the oral biofilms. This review provides some insights into thes- processes by including existing literature on the biology of nonoral bacterial biofilms, and the more recent literature just beginning to document how the oral cavity responds to multispecies biofilms. PMID:23141757

Enhanced photoelastic modulation in silica phononic crystal cavities

NASA Astrophysics Data System (ADS)

Kim, Ingi; Iwamoto, Satoshi; Arakawa, Yasuhiko

2018-04-01

The enhanced photoelastic modulation in quasi-one-dimensional (1D) phononic crystal (PnC) cavities made of fused silica is experimentally demonstrated. A confined acoustic wave in the cavity can induce a large birefringence through the photoelastic effect and enable larger optical modulation amplitude at the same acoustic power. We observe a phase retardation of ∼26 mrad of light passing through the cavity when the exciting acoustic frequency is tuned to the cavity mode resonance of ∼500 kHz at 2.5 V. In the present experiment, a 16-fold enhancement of retardation in the PnC cavity is demonstrated compared with that in a bar-shaped silica structure. Spatially resolved optical retardation measurement reveals that the large retardation is realized only around the cavity reflecting the localized nature of the acoustic cavity mode. The enhanced interactions between acoustic waves and light can be utilized to improve the performance of acousto-optic devices such as photoelastic modulators.

Decision Trees Predicting Tumor Shrinkage for Head and Neck Cancer: Implications for Adaptive Radiotherapy.

PubMed

Surucu, Murat; Shah, Karan K; Mescioglu, Ibrahim; Roeske, John C; Small, William; Choi, Mehee; Emami, Bahman

2016-02-01

To develop decision trees predicting for tumor volume reduction in patients with head and neck (H&N) cancer using pretreatment clinical and pathological parameters. Forty-eight patients treated with definitive concurrent chemoradiotherapy for squamous cell carcinoma of the nasopharynx, oropharynx, oral cavity, or hypopharynx were retrospectively analyzed. These patients were rescanned at a median dose of 37.8 Gy and replanned to account for anatomical changes. The percentages of gross tumor volume (GTV) change from initial to rescan computed tomography (CT; %GTVΔ) were calculated. Two decision trees were generated to correlate %GTVΔ in primary and nodal volumes with 14 characteristics including age, gender, Karnofsky performance status (KPS), site, human papilloma virus (HPV) status, tumor grade, primary tumor growth pattern (endophytic/exophytic), tumor/nodal/group stages, chemotherapy regimen, and primary, nodal, and total GTV volumes in the initial CT scan. The C4.5 Decision Tree induction algorithm was implemented. The median %GTVΔ for primary, nodal, and total GTVs was 26.8%, 43.0%, and 31.2%, respectively. Type of chemotherapy, age, primary tumor growth pattern, site, KPS, and HPV status were the most predictive parameters for primary %GTVΔ decision tree, whereas for nodal %GTVΔ, KPS, site, age, primary tumor growth pattern, initial primary GTV, and total GTV volumes were predictive. Both decision trees had an accuracy of 88%. There can be significant changes in primary and nodal tumor volumes during the course of H&N chemoradiotherapy. Considering the proposed decision trees, radiation oncologists can select patients predicted to have high %GTVΔ, who would theoretically gain the most benefit from adaptive radiotherapy, in order to better use limited clinical resources. © The Author(s) 2015.

Genome-Wide Analysis of Oleosin Gene Family in 22 Tree Species: An Accelerator for Metabolic Engineering of BioFuel Crops and Agrigenomics Industrial Applications?

PubMed Central

2015-01-01

Abstract Trees contribute to enormous plant oil reserves because many trees contain 50%–80% of oil (triacylglycerols, TAGs) in the fruits and kernels. TAGs accumulate in subcellular structures called oil bodies/droplets, in which TAGs are covered by low-molecular-mass hydrophobic proteins called oleosins (OLEs). The OLEs/TAGs ratio determines the size and shape of intracellular oil bodies. There is a lack of comprehensive sequence analysis and structural information of OLEs among diverse trees. The objectives of this study were to identify OLEs from 22 tree species (e.g., tung tree, tea-oil tree, castor bean), perform genome-wide analysis of OLEs, classify OLEs, identify conserved sequence motifs and amino acid residues, and predict secondary and three-dimensional structures in tree OLEs and OLE subfamilies. Data mining identified 65 OLEs with perfect conservation of the “proline knot” motif (PX5SPX3P) from 19 trees. These OLEs contained >40% hydrophobic amino acid residues. They displayed similar properties and amino acid composition. Genome-wide phylogenetic analysis and multiple sequence alignment demonstrated that these proteins could be classified into five OLE subfamilies. There were distinct patterns of sequence conservation among the OLE subfamilies and within individual tree species. Computational modeling indicated that OLEs were composed of at least three α-helixes connected with short coils without any β-strand and that they exhibited distinct 3D structures and ligand binding sites. These analyses provide fundamental information in the similarity and specificity of diverse OLE isoforms within the same subfamily and among the different species, which should facilitate studying the structure-function relationship and identify critical amino acid residues in OLEs for metabolic engineering of tree TAGs. PMID:26258573

Genome-Wide Analysis of Oleosin Gene Family in 22 Tree Species: An Accelerator for Metabolic Engineering of BioFuel Crops and Agrigenomics Industrial Applications?

PubMed

Cao, Heping

2015-09-01

Trees contribute to enormous plant oil reserves because many trees contain 50%-80% of oil (triacylglycerols, TAGs) in the fruits and kernels. TAGs accumulate in subcellular structures called oil bodies/droplets, in which TAGs are covered by low-molecular-mass hydrophobic proteins called oleosins (OLEs). The OLEs/TAGs ratio determines the size and shape of intracellular oil bodies. There is a lack of comprehensive sequence analysis and structural information of OLEs among diverse trees. The objectives of this study were to identify OLEs from 22 tree species (e.g., tung tree, tea-oil tree, castor bean), perform genome-wide analysis of OLEs, classify OLEs, identify conserved sequence motifs and amino acid residues, and predict secondary and three-dimensional structures in tree OLEs and OLE subfamilies. Data mining identified 65 OLEs with perfect conservation of the "proline knot" motif (PX5SPX3P) from 19 trees. These OLEs contained >40% hydrophobic amino acid residues. They displayed similar properties and amino acid composition. Genome-wide phylogenetic analysis and multiple sequence alignment demonstrated that these proteins could be classified into five OLE subfamilies. There were distinct patterns of sequence conservation among the OLE subfamilies and within individual tree species. Computational modeling indicated that OLEs were composed of at least three α-helixes connected with short coils without any β-strand and that they exhibited distinct 3D structures and ligand binding sites. These analyses provide fundamental information in the similarity and specificity of diverse OLE isoforms within the same subfamily and among the different species, which should facilitate studying the structure-function relationship and identify critical amino acid residues in OLEs for metabolic engineering of tree TAGs.

Adaptive zero-tree structure for curved wavelet image coding

NASA Astrophysics Data System (ADS)

Zhang, Liang; Wang, Demin; Vincent, André

2006-02-01

We investigate the issue of efficient data organization and representation of the curved wavelet coefficients [curved wavelet transform (WT)]. We present an adaptive zero-tree structure that exploits the cross-subband similarity of the curved wavelet transform. In the embedded zero-tree wavelet (EZW) and the set partitioning in hierarchical trees (SPIHT), the parent-child relationship is defined in such a way that a parent has four children, restricted to a square of 2×2 pixels, the parent-child relationship in the adaptive zero-tree structure varies according to the curves along which the curved WT is performed. Five child patterns were determined based on different combinations of curve orientation. A new image coder was then developed based on this adaptive zero-tree structure and the set-partitioning technique. Experimental results using synthetic and natural images showed the effectiveness of the proposed adaptive zero-tree structure for encoding of the curved wavelet coefficients. The coding gain of the proposed coder can be up to 1.2 dB in terms of peak SNR (PSNR) compared to the SPIHT coder. Subjective evaluation shows that the proposed coder preserves lines and edges better than the SPIHT coder.

High-polarization-discriminating infrared detection using a single quantum well sandwiched in plasmonic micro-cavity.

PubMed

Li, Qian; Li, ZhiFeng; Li, Ning; Chen, XiaoShuang; Chen, PingPing; Shen, XueChu; Lu, Wei

2014-09-11

Polarimetric imaging has proved its value in medical diagnostics, bionics, remote sensing, astronomy, and in many other wide fields. Pixel-level solid monolithically integrated polarimetric imaging photo-detectors are the trend for infrared polarimetric imaging devices. For better polarimetric imaging performance the high polarization discriminating detectors are very much critical. Here we demonstrate the high infrared light polarization resolving capabilities of a quantum well (QW) detector in hybrid structure of single QW and plasmonic micro-cavity that uses QW as an active structure in the near field regime of plasmonic effect enhanced cavity, in which the photoelectric conversion in such a plasmonic micro-cavity has been realized. The detector's extinction ratio reaches 65 at the wavelength of 14.7 μm, about 6 times enhanced in such a type of pixel-level polarization long wave infrared photodetectors. The enhancement mechanism is attributed to artificial plasmonic modulation on optical propagation and distribution in the plasmonic micro-cavities.

High-Polarization-Discriminating Infrared Detection Using a Single Quantum Well Sandwiched in Plasmonic Micro-Cavity

PubMed Central

Li, Qian; Li, ZhiFeng; Li, Ning; Chen, XiaoShuang; Chen, PingPing; Shen, XueChu; Lu, Wei

2014-01-01

Polarimetric imaging has proved its value in medical diagnostics, bionics, remote sensing, astronomy, and in many other wide fields. Pixel-level solid monolithically integrated polarimetric imaging photo-detectors are the trend for infrared polarimetric imaging devices. For better polarimetric imaging performance the high polarization discriminating detectors are very much critical. Here we demonstrate the high infrared light polarization resolving capabilities of a quantum well (QW) detector in hybrid structure of single QW and plasmonic micro-cavity that uses QW as an active structure in the near field regime of plasmonic effect enhanced cavity, in which the photoelectric conversion in such a plasmonic micro-cavity has been realized. The detector's extinction ratio reaches 65 at the wavelength of 14.7 μm, about 6 times enhanced in such a type of pixel-level polarization long wave infrared photodetectors. The enhancement mechanism is attributed to artificial plasmonic modulation on optical propagation and distribution in the plasmonic micro-cavities. PMID:25208580

Heparin-binding growth factor 1 induces the formation of organoid neovascular structures in vivo.

PubMed Central

Thompson, J A; Haudenschild, C C; Anderson, K D; DiPietro, J M; Anderson, W F; Maciag, T

1989-01-01

One of the promises of modern molecular biology has been the opportunity to use genetically modified human cells in a patient to permanently restore inborn errors of metabolism. Although it has been possible to introduce genes into mammalian cells and to control their expression, it has proven difficult to introduce mammalian cells as carriers of the modified genetic information into hosts. The successful implantation of selective cells cannot be achieved without adequate vascular support, an essential step toward integration and reconstitution of a new biological function. Although a partial solution to this problem has been found by inducing specific site-directed neovessel formation using heparin-binding growth factor 1 (HBGF-1) adsorbed to a collagen matrix, these implants function for only a short period (weeks). We now report the formation of organoid neovascular structures using polytetrafluoroethylene fibers coated with collagen and HBGF-1 implanted in the peritoneal cavity of the rat. The organoid structures contained readily visible vascular lumina and nonvascular structures that resemble nerve tissue. It was also possible to demonstrate that the vascular system on the implant is continuous with the vascular tree of the host. This feature was used to demonstrate that the organoid structures are capable of sustaining the biological function of implanted normal rat hepatocytes over long periods of time (months) in the homozygous Gunn rat, thereby facilitating future applications involving the delivery of new genetic information. Images PMID:2479012

Tree Testing of Hierarchical Menu Structures for Health Applications

PubMed Central

Le, Thai; Chaudhuri, Shomir; Chung, Jane; Thompson, Hilaire J; Demiris, George

2014-01-01

To address the need for greater evidence-based evaluation of Health Information Technology (HIT) systems we introduce a method of usability testing termed tree testing. In a tree test, participants are presented with an abstract hierarchical tree of the system taxonomy and asked to navigate through the tree in completing representative tasks. We apply tree testing to a commercially available health application, demonstrating a use case and providing a comparison with more traditional in-person usability testing methods. Online tree tests (N=54) and in-person usability tests (N=15) were conducted from August to September 2013. Tree testing provided a method to quantitatively evaluate the information structure of a system using various navigational metrics including completion time, task accuracy, and path length. The results of the analyses compared favorably to the results seen from the traditional usability test. Tree testing provides a flexible, evidence-based approach for researchers to evaluate the information structure of HITs. In addition, remote tree testing provides a quick, flexible, and high volume method of acquiring feedback in a structured format that allows for quantitative comparisons. With the diverse nature and often large quantities of health information available, addressing issues of terminology and concept classifications during the early development process of a health information system will improve navigation through the system and save future resources. Tree testing is a usability method that can be used to quickly and easily assess information hierarchy of health information systems. PMID:24582924

i-Tree: Tools to assess and manage structure, function, and value of community forests

NASA Astrophysics Data System (ADS)

Hirabayashi, S.; Nowak, D.; Endreny, T. A.; Kroll, C.; Maco, S.

2011-12-01

Trees in urban communities can mitigate many adverse effects associated with anthropogenic activities and climate change (e.g. urban heat island, greenhouse gas, air pollution, and floods). To protect environmental and human health, managers need to make informed decisions regarding urban forest management practices. Here we present the i-Tree suite of software tools (www.itreetools.org) developed by the USDA Forest Service and their cooperators. This software suite can help urban forest managers assess and manage the structure, function, and value of urban tree populations regardless of community size or technical capacity. i-Tree is a state-of-the-art, peer-reviewed Windows GUI- or Web-based software that is freely available, supported, and continuously refined by the USDA Forest Service and their cooperators. Two major features of i-Tree are 1) to analyze current canopy structures and identify potential planting spots, and 2) to estimate the environmental benefits provided by the trees, such as carbon storage and sequestration, energy conservation, air pollution removal, and storm water reduction. To cover diverse forest topologies, various tools were developed within the i-Tree suite: i-Tree Design for points (individual trees), i-Tree Streets for lines (street trees), and i-Tree Eco, Vue, and Canopy (in the order of complexity) for areas (community trees). Once the forest structure is identified with these tools, ecosystem services provided by trees can be estimated with common models and protocols, and reports in the form of texts, charts, and figures are then created for users. Since i-Tree was developed with a client/server architecture, nationwide data in the US such as location-related parameters, weather, streamflow, and air pollution data are stored in the server and retrieved to a user's computer at run-time. Freely available remote-sensed images (e.g. NLCD and Google maps) are also employed to estimate tree canopy characteristics. As the demand for i-Tree grows internationally, environmental databases from more countries will be coupled with the software suite. Two more i-Tree applications, i-Tree Forecast and i-Tree Landscape are now under development. i-Tree Forecast simulates canopy structures for up to 100 years based on planting and mortality rates and adds capabilities for other i-Tree applications to estimate the benefits of future canopy scenarios. While most i-Tree applications employ a spatially lumped approach, i-Tree landscape employs a spatially distributed approach that allows users to map changes in canopy cover and ecosystem services through time and space. These new i-Tree tools provide an advanced platform for urban managers to assess the impact of current and future urban forests. i-Tree allows managers to promote effective urban forest management and sound arboricultural practices by providing information for advocacy and planning, baseline data for making informed decisions, and standardization for comparisons with other communities.

Environmental Assessment. Construction and Maintenance of Wastewater Pipelines and Lift Stations and Installation of Fiber Optic Conduit at Eglin Air Force Base, Florida

DTIC Science & Technology

2012-06-01

habitats . However, on completion of the project, animals would likely return to the project site. There are known rare/protected species as well as...designated critical habitat occurring within the proposed project area. The threatened and endangered species field survey conducted on October 12- 13...critical habitat of the RCW. Numerous cavity trees used by the birds during breeding season were encounters along the Camp Rudder line route. Known as RCW

Demountable damped cavity for HOM-damping in ILC superconducting accelerating cavities

NASA Astrophysics Data System (ADS)

Konomi, T.; Yasuda, F.; Furuta, F.; Saito, K.

2014-01-01

We have designed a new higher-order-mode (HOM) damper called a demountable damped cavity (DDC) as part of the R&D efforts for the superconducting cavity of the International Linear Collider (ILC). The DDC has two design concepts. The first is an axially symmetrical layout to obtain high damping efficiency. The DDC has a coaxial structure along the beam axis to realize strong coupling with HOMs. HOMs are damped by an RF absorber at the end of the coaxial waveguide and the accelerating mode is reflected by a choke filter mounted at the entrance of the coaxial waveguide. The second design concept is a demountable structure to facilitate cleaning, in order to suppress the Q-slope problem in a high field. A single-cell cavity with the DDC was fabricated to test four performance parameters. The first was frequency matching between the accelerating cavity and the choke filter. Since the bandwidth of the resonance frequency in a superconducting cavity is very narrow, there is a possibility that the accelerating field will leak to the RF absorber because of thermal shrinkage. The design bandwidth of the choke filter is 25 kHz. It was demonstrated that frequency matching adjusted at room temperature could be successfully maintained at 2 K. The second parameter was the performance of the demountable structure. At the joint, the magnetic field is 1/6 of the maximum field in the accelerating cavity. Ultimately, the accelerating field reached 19 MV/m and Q0 was 1.5×1010 with a knife-edge shape. The third parameter was field emission and multipacting. Although the choke structure has numerous parallel surfaces that are susceptible to the multipacting problem, it was found that neither field emission nor multipacting presented problems in both an experiment and simulation. The final parameter was the Q values of the HOM. The RF absorber adopted in the system is a Ni-Zn ferrite type. The RF absorber shape was designed based on the measurement data of permittivity and permeability at 77 K. The Q values of the HOM in the DDC are 10-100 times lower than those of a TESLA-type HOM coupler.

Cavity parameters identification for TESLA control system development

NASA Astrophysics Data System (ADS)

Czarski, Tomasz; Pozniak, Krysztof T.; Romaniuk, Ryszard S.; Simrock, Stefan

2005-08-01

Aim of the control system development for TESLA cavity is a more efficient stabilization of the pulsed, accelerating EM field inside resonator. Cavity parameters identification is an essential task for the comprehensive control algorithm. TESLA cavity simulator has been successfully implemented using high-speed FPGA technology. Electromechanical model of the cavity resonator includes Lorentz force detuning and beam loading. The parameters identification is based on the electrical model of the cavity. The model is represented by state space equation for envelope of the cavity voltage driven by current generator and beam loading. For a given model structure, the over-determined matrix equation is created covering long enough measurement range with the solution according to the least-squares method. A low-degree polynomial approximation is applied to estimate the time-varying cavity detuning during the pulse. The measurement channel distortion is considered, leading to the external cavity model seen by the controller. The comprehensive algorithm of the cavity parameters identification was implemented in the Matlab system with different modes of operation. Some experimental results were presented for different cavity operational conditions. The following considerations have lead to the synthesis of the efficient algorithm for the cavity control system predicted for the potential FPGA technology implementation.

On fractal properties of arterial trees.

PubMed

Zamir, M

1999-04-21

The question of fractal properties of arterial trees is considered in light of data from the extensive tree structure of the right coronary artery of a human heart. Because of the highly non-uniform structure of this tree, the study focuses on the purely geometrical rather than statistical aspects of fractal properties. The large number of arterial bifurcations comprising the tree were found to have a mixed degree of asymmetry at all levels of the tree, including the depth of the tree where it has been generally supposed that they would be symmetrical. Cross-sectional area ratios of daughter to parent vessels were also found to be highly mixed at all levels, having values both above and below 1.0, rather than consistently above as has been generally supposed in the past. Calculated values of the power law index which describes the theoretical relation between the diameters of the three vessel segments at an arterial bifurcation were found to range far beyond the two values associated with the cube and square laws, and not clearly favoring one or the other. On the whole the tree structure was found to have what we have termed "pseudo-fractal" properties, in the sense that vessels of different calibers displayed the same branching pattern but with a range of values of the branching parameters. The results suggest that a higher degree of fractal character, one in which the branching parameters are constant throughout the tree structure, is unlikely to be attained in non-uniform vascular structures. Copyright 1999 Academic Press.

Visual exploration of parameter influence on phylogenetic trees.

PubMed

Hess, Martin; Bremm, Sebastian; Weissgraeber, Stephanie; Hamacher, Kay; Goesele, Michael; Wiemeyer, Josef; von Landesberger, Tatiana

2014-01-01

Evolutionary relationships between organisms are frequently derived as phylogenetic trees inferred from multiple sequence alignments (MSAs). The MSA parameter space is exponentially large, so tens of thousands of potential trees can emerge for each dataset. A proposed visual-analytics approach can reveal the parameters' impact on the trees. Given input trees created with different parameter settings, it hierarchically clusters the trees according to their structural similarity. The most important clusters of similar trees are shown together with their parameters. This view offers interactive parameter exploration and automatic identification of relevant parameters. Biologists applied this approach to real data of 16S ribosomal RNA and protein sequences of ion channels. It revealed which parameters affected the tree structures. This led to a more reliable selection of the best trees.

Medico-historical study of "aśvattha" (sacred fig tree).

PubMed

Prasad, P V V; Subhaktha, P K J P; Narayana, Ala; Rao, M Mruthyumjaya

2006-01-01

Aśvattha (Ficus religiosa Linn.) is a tree which has got mythological, religious and medicinal importance in Indian culture since ancient times. As per Vedic Index Aśvattha means horse stand, a place or site or an object where or under which horses stand. Aśvattha is also known as Pipal and Bodhidrma. This tree is the oldest depicted tree in India. In Vedic times it was used to make fire by friction and considered sacred. Atharvavĕda associates it with the third heaven. It discusses medicinal properties of Aśvattha along with Soma and Kuştha. Aśvattha is associated with the triad of Gods-Brahma, vişņu and siva. Reference to Aśvattha is found in Rămăyaņa, Mahăbhărata, Bhagavadgĭta, Buddhistic literature, Arthaśăstra, Purănăs, Upanişads etc. non-medical literature also. According to Ayurvĕda it has several synonyms. Most of them symbolize its sacredness. Aśvattha is useful in various ailments like consumption, vomiting, ulcers in oral cavity, burns, gynaecological problems etc. Thus its medico-historical importance, regional nomenclature, morphological features in brief etc. are being presented in this article with few illustrations.

All-optical transistor based on Rydberg atom-assisted optomechanical system.

PubMed

Liu, Yi-Mou; Tian, Xue-Dong; Wang, Jing; Fan, Chu-Hui; Gao, Feng; Bao, Qian-Qian

2018-04-30

We study the optical response of a double optomechanical cavity system assisted by two Rydberg atoms. The target atom is only coupled with one side cavity by a single cavity mode, and gate one is outside the cavities. It has been realized that a long-range manipulation of optical properties of a hybrid system, by controlling the Rydberg atom decoupled with the optomechanical cavity. Switching on the coupling between atoms and cavity mode, the original spatial inversion symmetry of the double cavity structure has been broken. Combining the controllable optical non-reciprocity with the coherent perfect absorption/transmission/synthesis effect (CPA/CPT/CPS reported by [ X.-B.Yan Opt. Express 22, 4886 (2014)], we put forward the theoretical schemes of an all-optical transistor which contains functions such as a controllable diode, rectifier, and amplifier by controlling a single gate photon.

Morphology Of A Hot Prominence Cavity Observed with Hinode/XRT and SDO/AIA

NASA Technical Reports Server (NTRS)

Weber, Mark A.; Reeves, K. K.; Gibson, S. E.; Kucera, T. A.

2012-01-01

Prominence cavities appear as circularly shaped voids in coronal emission over polarity inversion lines where a prominence channel is straddling the solar limb. The presence of chromospheric material suspended at coronal altitudes is a common but not necessary feature within these cavities. These voids are observed to change shape as a prominence feature rotates around the limb. We use a morphological model projected in cross-sections to fit the cavity emission in Hinode/XRT passbands, and then apply temperature diagnostics to XRT and SDO/AIA data to investigate the thermal structure. We find significant evidence that the prominence cavity is hotter than the corona immediately outside the cavity boundary. This investigation follows upon "Thermal Properties of A Solar Coronal Cavity Observed with the X-ray Telescope on Hinode" by Reeves et al., 2012, ApJ, in press.

Warps and intra-cavity kinematics in transition disks

NASA Astrophysics Data System (ADS)

Casassus, S.

2017-07-01

The inferrence of radial gaps in the "transition disk" stage of protoplanetary disk evolution motivates questions on their origin, and possible link to planet formation. This talk presented recent observations of cavities in transition disks. Here we report on the aspects related to the observations of warps, and on the structure and kinematics of the residual gas inside TD cavities.

Out-of-the-groove transport of lipids by TMEM16 and GPCR scramblases.

PubMed

Malvezzi, Mattia; Andra, Kiran K; Pandey, Kalpana; Lee, Byoung-Cheol; Falzone, Maria E; Brown, Ashley; Iqbal, Rabia; Menon, Anant K; Accardi, Alessio

2018-06-20

Phospholipid scramblases externalize phosphatidylserine to facilitate numerous physiological processes. Several members of the structurally unrelated TMEM16 and G protein-coupled receptor (GPCR) protein families mediate phospholipid scrambling. The structure of a TMEM16 scramblase shows a membrane-exposed hydrophilic cavity, suggesting that scrambling occurs via the ‟credit-card" mechanism where lipid headgroups permeate through the cavity while their tails remain associated with the membrane core. Here we show that afTMEM16 and opsin, representatives of the TMEM16 and GCPR scramblase families, transport phospholipids with polyethylene glycol headgroups whose globular dimensions are much larger than the width of the cavity. This suggests that transport of these large headgroups occurs outside rather than within the cavity. These large lipids are scrambled at rates comparable to those of normal phospholipids and their presence in the reconstituted vesicles promotes scrambling of normal phospholipids. This suggests that both large and small phospholipids can move outside the cavity. We propose that the conformational rearrangements underlying TMEM16- and GPCR-mediated credit-card scrambling locally deform the membrane to allow transbilayer lipid translocation outside the cavity and that both mechanisms underlie transport of normal phospholipids.

Studies of a driven Alfvénic cavity and cylindrical Alfven eigenmodes in LAPD

NASA Astrophysics Data System (ADS)

Lybarger, Warren; Carter, Troy; Brugman, Brian; Pribyl, Pat

2004-11-01

An Alfven wave MASER has been observed in the Large Plasma Device (LAPD), where an instability drives a resonant Alfven wave in the cavity defined by the cathode and anode of the discharge source(J.E. Maggs and G.J. Morales, PRL, 91, 035004-1 (2003)). We will present a study of external driving of this cavity, motivated by a desire to find a source of large amplitude Alfvén waves for studies of nonlinear interactions. The cavity is driven by modulating the discharge current using a broadband, high power push-pull amplifier. The Alfvén waves launched by exciting the cavity are large amplitude (δ B/B ˜ 1%) and are eigenmodes of the cylindrical column. Experimental results will be presented on the structure of the eigenmodes in the plasma column, the Q-value of the cavity and its dependence on plasma parameters, and deviations in the structure of the eigenmodes from ideal MHD due to kinetic effects. Experimental results will be compared to theories of Alfvén eigenmodes in a cylindrical column. * Work supported by DOE grant # DE-FG03-02ER54688

An Ideal Design for an Idea Processor.

DTIC Science & Technology

1986-09-01

make it a strong, healthy tree --all this, even as he was busily tending other plants in the garden. I will always remember his unique blend of experience...Structures Hierarchies. One of the most important structures of .Y. knowledge for communication is the hierarchy or tree (16:223). Friendly describes...typically used for documenting the tree -like structure of computer programs--to help structure expository writing (14:197). Figures 3 and 4 present examples

A structurally based analytic model for estimation of biomass and fuel loads of woodland trees

Treesearch

Robin J. Tausch

2009-01-01

Allometric/structural relationships in tree crowns are a consequence of the physical, physiological, and fluid conduction processes of trees, which control the distribution, efficient support, and growth of foliage in the crown. The structural consequences of these processes are used to develop an analytic model based on the concept of branch orders. A set of...

Tree growth and competition in an old-growth Picea abies forest of boreal Sweden: influence of tree spatial patterning

USGS Publications Warehouse

Fraver, Shawn; D'Amato, Anthony W.; Bradford, John B.; Jonsson, Bengt Gunnar; Jönsson, Mari; Esseen, Per-Anders

2013-01-01

Question: What factors best characterize tree competitive environments in this structurally diverse old-growth forest, and do these factors vary spatially within and among stands? Location: Old-growth Picea abies forest of boreal Sweden. Methods: Using long-term, mapped permanent plot data augmented with dendrochronological analyses, we evaluated the effect of neighbourhood competition on focal tree growth by means of standard competition indices, each modified to include various metrics of trees size, neighbour mortality weighting (for neighbours that died during the inventory period), and within-neighbourhood tree clustering. Candidate models were evaluated using mixed-model linear regression analyses, with mean basal area increment as the response variable. We then analysed stand-level spatial patterns of competition indices and growth rates (via kriging) to determine if the relationship between these patterns could further elucidate factors influencing tree growth. Results: Inter-tree competition clearly affected growth rates, with crown volume being the size metric most strongly influencing the neighbourhood competitive environment. Including neighbour tree mortality weightings in models only slightly improved descriptions of competitive interactions. Although the within-neighbourhood clustering index did not improve model predictions, competition intensity was influenced by the underlying stand-level tree spatial arrangement: stand-level clustering locally intensified competition and reduced tree growth, whereas in the absence of such clustering, inter-tree competition played a lesser role in constraining tree growth. Conclusions: Our findings demonstrate that competition continues to influence forest processes and structures in an old-growth system that has not experienced major disturbances for at least two centuries. The finding that the underlying tree spatial pattern influenced the competitive environment suggests caution in interpreting traditional tree competition studies, in which tree spatial patterning is typically not taken into account. Our findings highlight the importance of forest structure – particularly the spatial arrangement of trees – in regulating inter-tree competition and growth in structurally diverse forests, and they provide insight into the causes and consequences of heterogeneity in this old-growth system.

Electrodynamic characterisitcs measurements of higher order modes in S-band cavity

NASA Astrophysics Data System (ADS)

Donetsky, R.; Lalayan, M.; Sobenin, N. P.; Orlov, A.; Bulygin, A.

2017-12-01

The 800 MHz superconducting cavities with grooved beam pipes were suggested as one of the harmonic cavities design options for High Luminosity LHC project. Cavity simulations were carried out and scaled aluminium prototype having operational mode frequency of 2400 MHz was manufactured for testing the results of simulations. The experimental measurements of transverse shunt impedance with error estimation for higher order modes TM 110 and TE 111 for S-band elliptical cavity were done. The experiments using dielectric and metallic spherical beads and with ring probe were carried out. The Q-factor measurements for two-cell structure and array of two cells were carried out.

Width effects in transonic flow over a rectangular cavity

DOE PAGES

Beresh, Steven J.; Wagner, Justin L.; Henfling, John F.; ...

2015-07-24

A previous experiment by the present authors studied the flow over a finite-width rectangular cavity at freestream Mach numbers 1.5–2.5. In addition, this investigation considered the influence of three-dimensional geometry that is not replicated by simplified cavities that extend across the entire wind-tunnel test section. The latter configurations have the attraction of easy optical access into the depths of the cavity, but they do not reproduce effects upon the turbulent structures and acoustic modes due to the length-to-width ratio, which is becoming recognized as an important parameter describing the nature of the flow within narrower cavities.

Lens-and-Detector Array for Spectrometer

NASA Technical Reports Server (NTRS)

Oberheuser, J.

1985-01-01

Supporting structure alines lenses and serves as light baffle. Lenses and infrared detectors mounted together in cavities in electroformed plate. Plate and cavities maintain optical alinement while serving as light baffle and aperture stop.

Principles for designing proteins with cavities formed by curved β sheets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marcos, Enrique; Basanta, Benjamin; Chidyausiku, Tamuka M.

Active sites and ligand-binding cavities in native proteins are often formed by curved β sheets, and the ability to control β-sheet curvature would allow design of binding proteins with cavities customized to specific ligands. Toward this end, we investigated the mechanisms controlling β-sheet curvature by studying the geometry of β sheets in naturally occurring protein structures and folding simulations. The principles emerging from this analysis were used to design, de novo, a series of proteins with curved β sheets topped with α helices. Nuclear magnetic resonance and crystal structures of the designs closely match the computational models, showing that β-sheetmore » curvature can be controlled with atomic-level accuracy. Our approach enables the design of proteins with cavities and provides a route to custom design ligand-binding and catalytic sites.« less

Research on a novel composite structure Er³⁺-doped DBR fiber laser with a π-phase shifted FBG.

PubMed

Zhao, Yanjie; Chang, Jun; Wang, Qingpu; Ni, Jiasheng; Song, Zhiqiang; Qi, Haifeng; Wang, Chang; Wang, Pengpeng; Gao, Liang; Sun, Zhihui; Lv, Guangping; Liu, Tongyu; Peng, Gangding

2013-09-23

A simple composite cavity structure Er³⁺-doped fiber laser was proposed and demonstrated experimentally. The resonant cavity consists of a pair of uniform fiber Bragg gratings (FBGs) and a π-phase shifted FBG. By introducing the π-phase shifted FBG into the cavity as the selective wavelength component, it can increase the effective length of the laser cavity and suppress the multi-longitudinal modes simultaneously. The narrow linewidth of 900 Hz and low RIN of -95 dB/Hz were obtained. And the lasing wavelength was rather stable with the pump power changing. The SMRS was more than 67 dB. The results show that the proposed fiber laser has a good performance and considerable potential application for fiber sensor and optical communication.

Multi-angle VECSEL cavities for dispersion control and multi-color operation

NASA Astrophysics Data System (ADS)

Baker, Caleb; Scheller, Maik; Laurain, Alexandre; Yang, Hwang-Jye; Ruiz Perez, Antje; Stolz, Wolfgang; Addamane, Sadhvikas J.; Balakrishnan, Ganesh; Jones, R. Jason; Moloney, Jerome V.

2017-02-01

We present a novel Vertical External Cavity Surface Emitting Laser (VECSEL) cavity design which makes use of multiple interactions with the gain region under different angles of incidence in a single round trip. This design allows for optimization of the net, round-trip Group Delay Dispersion (GDD) by shifting the GDD of the gain via cavity fold angle while still maintaining the high gain of resonant structures. The effectiveness of this scheme is demonstrated with femtosecond-regime pulses from a resonant structure and record pulse energies for the VECSEL gain medium. In addition, we show that the interference pattern of the intracavity mode within the active region, resulting from the double-angle multifold, is advantageous for operating the laser in CW on multiple wavelengths simultaneously. Power, noise, and mode competition characterization is presented.

Field-incidence noise transmission loss of general aviation aircraft double wall configurations

NASA Astrophysics Data System (ADS)

Grosveld, F. W.

1984-01-01

Theoretical formulations have been developed to describe the transmission of reverberant sound through an infinite, semi-infinite and a finite double panel structure. The model incorporates the fundamental resonance frequencies of each of the panels, the mass-air-mass resonances of the structure, the standing wave resonances in the cavity between the panels and finally the coincidence resonance regions, where the exciting sound pressure wave and flexural waves of each of the panels coincide. It is shown that phase cancellation effects of pressure waves reflected from the cavity boundaries back into the cavity allows the transmission loss of a finite double panel structure to be approximated by a finite double panel mounted in an infinite baffle having no cavity boundaries. Comparison of the theory with high quality transmission loss data yields good agreement in the mass-controlled frequency region. It is shown that the application of acoustic blankets to the double panel structure does not eliminate the mass-air-mass resonances if those occur at low frequencies. It is concluded that this frequency region of low noise transmission loss is a potential interior noise problem area for propeller driven aircraft having a double panel fuselage construction.

A Mixtures-of-Trees Framework for Multi-Label Classification

PubMed Central

Hong, Charmgil; Batal, Iyad; Hauskrecht, Milos

2015-01-01

We propose a new probabilistic approach for multi-label classification that aims to represent the class posterior distribution P(Y|X). Our approach uses a mixture of tree-structured Bayesian networks, which can leverage the computational advantages of conditional tree-structured models and the abilities of mixtures to compensate for tree-structured restrictions. We develop algorithms for learning the model from data and for performing multi-label predictions using the learned model. Experiments on multiple datasets demonstrate that our approach outperforms several state-of-the-art multi-label classification methods. PMID:25927011

Effect of tree structure on X-band microwave signature of conifers

NASA Technical Reports Server (NTRS)

Mougin, Eric; Lopes, Armand; Karam, Mostafa A.; Fung, Adrian K.

1993-01-01

Experimental studies are performed on some coniferous trees (Austrian pine, Nordmann spruce, and Norway spruce) to investigate the relation between the tree architecture and radar signal at X-band. For a single tree, the RCS is measured as a function of the scatterer location at 90 deg incidence. It is found that the main scatterers are the leafy branches and the difference between sigma(vv) and sigma(hh) is significant at the upper portion of the tree. At the lower portion of the tree, sigma(vv) and sigma(hh) have almost the same level. For a group of trees the angular trends of sigma(vv) and sigma(hh) are measured. It is found that the levels of sigma(vv) and sigma(hh) are of the same order, but their angular trends vary from one tree species to the other depending on the tree species structure. The interpretation of these experimental results is carried out with the help of a theoretical model which accounts for the structure of the tree. According to this theoretical study, the major scattering trend is due to the leaves, while the perturbation to the angular trend and the level difference between sigma(vv) and sigma(hh) are due to the branch orientation distributions (i.e., the tree architecture).

Composition and structure of an old-growth floodplain forest of the lower Kaskaskia River

Treesearch

John B. Taft

2003-01-01

Compositional and structural properties of canopy, shrub/sapling, and ground-cover strata were measured within an old-growth floodplain forest bordering the lower Kaskaskia River in southwestern Illinois. Basal area for trees was estimated at 31.8 m²/ha, tree density was 398 trees/ha with 27 species recorded in the canopy stratum. The dominant tree species...

Spitzer Reveals Stellar 'Family Tree'

NASA Technical Reports Server (NTRS)

2008-01-01

[figure removed for brevity, see original site] High resolution poster version

Generations of stars can be seen in this new infrared portrait from NASA's Spitzer Space Telescope. In this wispy star-forming region, called W5, the oldest stars can be seen as blue dots in the centers of the two hollow cavities (other blue dots are background and foreground stars not associated with the region). Younger stars line the rims of the cavities, and some can be seen as dots at the tips of the elephant-trunk-like pillars. The white knotty areas are where the youngest stars are forming.

W5 spans an area of sky equivalent to four full moons and is about 6,500 light-years away in the constellation Cassiopeia. The Spitzer picture was taken over a period of 24 hours.

Like other massive star-forming regions, such as Orion and Carina, W5 contains large cavities that were carved out by radiation and winds from the region's most massive stars. According to the theory of triggered star-formation, the carving out of these cavities pushes gas together, causing it to ignite into successive generations of new stars.

This image contains some of the best evidence yet for the triggered star-formation theory. Scientists analyzing the photo have been able to show that the ages of the stars become progressively and systematically younger with distance from the center of the cavities.

This picture was taken with Spitzer's infrared array camera. It is a four-color composite, in which light with a wavelength of 3.6 microns is blue; 4.5-micron light is green; 5.8-micron light is orange; and 8-micron light is red.

Survival of plant tissue at super-low temperatures v. An electron microscope study of ice in cortical cells cooled rapidly.

PubMed

Sakai, A; Otsuka, K

1967-12-01

Experiments were carried out with cortical cells in twig bark of mulberry trees in winter in order to clarify the mechanism of survival at super-low temperatures with rapid cooling and rewarming. Attention was given to the relation between the existence of intracellular ice crystals and survival.Cortical cells were cooled rapidly by direct immersion into liquid nitrogen or isopentane cooled at various temperatures. After immersion, they were freeze-substituted with absolute ethanol at -78 degrees . They were then embedded, sectioned and examined under the electron microscope for the presence and distribution of cavities left after ice removal.Cells were found to remain alive and contain no ice cavities when immersed rapidly into isopentane baths kept below -60 degrees . Those cells at intermediate temperatures from -20 degrees to -45 degrees , were almost all destroyed. It was also observed that many ice cavities were contained in the cells immersed rapidly into isopentane baths at -30 degrees . The data seem to indicate that no ice crystals were formed when cooled rapidly by direct immersion into isopentane baths below -60 degrees or into liquid nitrogen.The tissue sections immersed in liquid nitrogen were rapidly transferred to isopentane baths at temperatures ranging from -70 degrees to -10 degrees before rapid rewarming. There was little damage when samples were held at temperatures below -50 degrees for 10 minutes or below -60 degrees for 16 hours. No cavities were found in these cells. Above -45 degrees , and especially at -30 degrees , however, all cells were completely destroyed even when exposed only for 1 minute. Many ice cavities were observed throughout these cells. The results obtained may be explained in terms of the growth rate of intracellular ice crystals.

Structure and molecular mechanism of a nucleobase-cation-symport-1 family transporter.

PubMed

Weyand, Simone; Shimamura, Tatsuro; Yajima, Shunsuke; Suzuki, Shun'ichi; Mirza, Osman; Krusong, Kuakarun; Carpenter, Elisabeth P; Rutherford, Nicholas G; Hadden, Jonathan M; O'Reilly, John; Ma, Pikyee; Saidijam, Massoud; Patching, Simon G; Hope, Ryan J; Norbertczak, Halina T; Roach, Peter C J; Iwata, So; Henderson, Peter J F; Cameron, Alexander D

2008-10-31

The nucleobase-cation-symport-1 (NCS1) transporters are essential components of salvage pathways for nucleobases and related metabolites. Here, we report the 2.85-angstrom resolution structure of the NCS1 benzyl-hydantoin transporter, Mhp1, from Microbacterium liquefaciens. Mhp1 contains 12 transmembrane helices, 10 of which are arranged in two inverted repeats of five helices. The structures of the outward-facing open and substrate-bound occluded conformations were solved, showing how the outward-facing cavity closes upon binding of substrate. Comparisons with the leucine transporter LeuT(Aa) and the galactose transporter vSGLT reveal that the outward- and inward-facing cavities are symmetrically arranged on opposite sides of the membrane. The reciprocal opening and closing of these cavities is synchronized by the inverted repeat helices 3 and 8, providing the structural basis of the alternating access model for membrane transport.

Silicon Alignment Pins: An Easy Way to Realize a Wafer-To-Wafer Alignment

NASA Technical Reports Server (NTRS)

Peralta, Alejandro (Inventor); Gill, John J. (Inventor); Toda, Risaku (Inventor); Lin, Robert H. (Inventor); Jung-Kubiak, Cecile (Inventor); Reck, Theodore (Inventor); Thomas, Bertrand (Inventor); Siles, Jose V. (Inventor); Lee, Choonsup (Inventor); Chattopadhyay, Goutam (Inventor)

2016-01-01

A silicon alignment pin is used to align successive layers of components made in semiconductor chips and/or metallic components to make easier the assembly of devices having a layered structure. The pin is made as a compressible structure which can be squeezed to reduce its outer diameter, have one end fit into a corresponding alignment pocket or cavity defined in a layer of material to be assembled into a layered structure, and then allowed to expand to produce an interference fit with the cavity. The other end can then be inserted into a corresponding cavity defined in a surface of a second layer of material that mates with the first layer. The two layers are in registry when the pin is mated to both. Multiple layers can be assembled to create a multilayer structure. Examples of such devices are presented.

Methodology for the structural design of single spoke accelerating cavities at Fermilab

DOE PAGES

Passarelli, Donato; Wands, Robert H.; Merio, Margherita; ...

2016-10-01

Fermilab is planning to upgrade its accelerator complex to deliver a more powerful and intense proton-beam for neutrino experiments. In the framework of the so-called Proton Improvement Plan-II (PIP-II), we are designing and developing a cryomodule containing superconducting accelerating cavities, the Single Spoke Resonators of type 1 (SSR1). In this paper, we present the sequence of analysis and calculations performed for the structural de- sign of these cavities, using the rules of the American Society of Mechanical Engineers (ASME) Boiler and Pressure Vessel Code (BPVC). The lack of an accepted procedure for addressing the design, fabrication, and inspection of suchmore » unique pressure vessels makes the task demanding and challenging every time. Several factors such as exotic materials, unqualified brazing procedures, limited nondestructive examination, and the general R&D nature of these early generations of cavity design, conspire to make it impractical to obtain full compliance with all ASME BPVC requirements. However, the presented approach allowed us to validate the design of these new generation of single spoke cavities with values of maximum allowable working pressure that exceed the safety requirements. This set of rules could be used as a starting point for the structural design and development of similar objects.« less

Methodology for the structural design of single spoke accelerating cavities at Fermilab

NASA Astrophysics Data System (ADS)

Passarelli, Donato; Wands, Robert H.; Merio, Margherita; Ristori, Leonardo

2016-10-01

Fermilab is planning to upgrade its accelerator complex to deliver a more powerful and intense proton-beam for neutrino experiments. In the framework of the so-called Proton Improvement Plan-II (PIP-II), we are designing and developing a cryomodule containing superconducting accelerating cavities, the Single Spoke Resonators of type 1 (SSR1). In this paper, we present the sequence of analysis and calculations performed for the structural design of these cavities, using the rules of the American Society of Mechanical Engineers (ASME) Boiler and Pressure Vessel Code (BPVC). The lack of an accepted procedure for addressing the design, fabrication, and inspection of such unique pressure vessels makes the task demanding and challenging every time. Several factors such as exotic materials, unqualified brazing procedures, limited nondestructive examination, and the general R&D nature of these early generations of cavity design, conspire to make it impractical to obtain full compliance with all ASME BPVC requirements. However, the presented approach allowed us to validate the design of this new generation of single spoke cavities with values of maximum allowable working pressure that exceeds the safety requirements. This set of rules could be used as a starting point for the structural design and development of similar objects.

Structural basis for highly effective HIV-1 neutralization by CD4-mimetic miniproteins revealed by 1.5 Å co-crystal structure of gp120 and M48U1

PubMed Central

Acharya, Priyamvada; Luongo, Timothy; Louder, Mark K.; McKee, Krisha; Yang, Yongping; Kwon, Young Do; Mascola, John R.; Kessler, Pascal; Martin, Loïc; Kwong, Peter D.

2014-01-01

The interface between HIV-1 gp120 envelope glycoprotein and CD4 receptor contains an unusual interfacial cavity, the “Phe43 cavity”, which miniprotein mimetics of CD4 with non-natural extensions can potentially utilize to enhance their neutralization of HIV-1. Here we report co-crystal structures of HIV-1 gp120 with miniproteins M48U1 and M48U7, which insert cyclohexylmethoxy and 5-hydroxypentylmethoxy extensions, respectively, into the Phe43 cavity. Both inserts displayed flexibility and hydrophobic interactions, but the M48U1 insert showed better shape complementarity with the Phe43 cavity than the M48U7 insert. Subtle alteration in gp120 conformation played a substantial role in optimizing fit. With M48U1, these translated into a YU2-gp120 affinity of 0.015 nM and neutralization of all 180-circulating HIV-1 strains tested, except clade-A/E isolates with non-canonical Phe43 cavities. Ligand chemistry, shape complementary, surface burial, and gp120 conformation act in concert to modulate binding of ligands to the gp120-Phe43 cavity and, when optimized, can effect near pan-neutralization of HIV-1. PMID:23707685

[Advances in studies on the structure of farmland shelterbelt ecosystem].

PubMed

Li, Chunping; Guan, Wenbin; Fan, Zhiping; Su, Fanxin; Wang, Xilin

2003-11-01

The ecological function of farmland shelterbelt system is determined by its structure. The spatio-temporal structure is a key aspect in related researches, which is very necessary to study the integrity, stability and durability of shelterbelt modules. In this article, the researches on the structure of farmland shelterbelt ecosystem were reviewed from the four scales of tree structure, shelterbelt structure, shelterbelts network and landscape structure. The principles, methods and productions of each scale were summarized, and the prospects were also discussed. Dynamic simulation of tree growth process in shelterbelts could be conducted by the theory of form and quality structure of tree and by fractal graphics, which were helpful to study the mechanism of individual trees and belts based on photosynthetic and transpiration mechanism of individual trees. The mechanism model of shelterbelt porosity should be conducted, so that, the sustainable yield model of shelterbelt management could be established, and the optimized model of shelterbelt networks with multi-special and multi-hierarchical structure could also be formed. Evaluating the reasonability, stability and durability of shelterbelt landscape based on the theories and methods of landscape ecology was an important task in the future studies.

Advanced accelerator and mm-wave structure research at LANL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Simakov, Evgenya Ivanovna

2016-06-22

This document outlines acceleration projects and mm-wave structure research performed at LANL. The motivation for PBG research is described first, with reference to couplers for superconducting accelerators and structures for room-temperature accelerators and W-band TWTs. These topics are then taken up in greater detail: PBG structures and the MIT PBG accelerator; SRF PBG cavities at LANL; X-band PBG cavities at LANL; and W-band PBG TWT at LANL. The presentation concludes by describing other advanced accelerator projects: beam shaping with an Emittance Exchanger, diamond field emitter array cathodes, and additive manufacturing of novel accelerator structures.

Analysis of three-dimensional-cavity-backed aperture antennas using a Combined Finite Element Method/Method of Moments/Geometrical Theory of Diffraction technique

NASA Technical Reports Server (NTRS)

Reddy, C. J.; Deshpande, M. D.; Cockrell, C. R.; Beck, F. B.

1995-01-01

A combined finite element method (FEM) and method of moments (MoM) technique is presented to analyze the radiation characteristics of a cavity-fed aperture in three dimensions. Generalized feed modeling has been done using the modal expansion of fields in the feed structure. Numerical results for some feeding structures such as a rectangular waveguide, circular waveguide, and coaxial line are presented. The method also uses the geometrical theory of diffraction (GTD) to predict the effect of a finite ground plane on radiation characteristics. Input admittance calculations for open radiating structures such as a rectangular waveguide, a circular waveguide, and a coaxial line are shown. Numerical data for a coaxial-fed cavity with finite ground plane are verified with experimental data.

Traversing and labeling interconnected vascular tree structures from 3D medical images

NASA Astrophysics Data System (ADS)

O'Dell, Walter G.; Govindarajan, Sindhuja Tirumalai; Salgia, Ankit; Hegde, Satyanarayan; Prabhakaran, Sreekala; Finol, Ender A.; White, R. James

2014-03-01

Purpose: Detailed characterization of pulmonary vascular anatomy has important applications for the diagnosis and management of a variety of vascular diseases. Prior efforts have emphasized using vessel segmentation to gather information on the number or branches, number of bifurcations, and branch length and volume, but accurate traversal of the vessel tree to identify and repair erroneous interconnections between adjacent branches and neighboring tree structures has not been carefully considered. In this study, we endeavor to develop and implement a successful approach to distinguishing and characterizing individual vascular trees from among a complex intermingling of trees. Methods: We developed strategies and parameters in which the algorithm identifies and repairs false branch inter-tree and intra-tree connections to traverse complicated vessel trees. A series of two-dimensional (2D) virtual datasets with a variety of interconnections were constructed for development, testing, and validation. To demonstrate the approach, a series of real 3D computed tomography (CT) lung datasets were obtained, including that of an anthropomorphic chest phantom; an adult human chest CT; a pediatric patient chest CT; and a micro-CT of an excised rat lung preparation. Results: Our method was correct in all 2D virtual test datasets. For each real 3D CT dataset, the resulting simulated vessel tree structures faithfully depicted the vessel tree structures that were originally extracted from the corresponding lung CT scans. Conclusion: We have developed a comprehensive strategy for traversing and labeling interconnected vascular trees and successfully implemented its application to pulmonary vessels observed using 3D CT images of the chest.

Thermo-elasto-plastic simulations of femtosecond laser-induced multiple-cavity in fused silica

NASA Astrophysics Data System (ADS)

Beuton, R.; Chimier, B.; Breil, J.; Hébert, D.; Mishchik, K.; Lopez, J.; Maire, P. H.; Duchateau, G.

2018-04-01

The formation and the interaction of multiple cavities, induced by tightly focused femtosecond laser pulses, are studied using a developed numerical tool, including the thermo-elasto-plastic material response. Simulations are performed in fused silica in cases of one, two, and four spots of laser energy deposition. The relaxation of the heated matter, launching shock waves in the surrounding cold material, leads to cavity formation and emergence of areas where cracks may be induced. Results show that the laser-induced structure shape depends on the energy deposition configuration and demonstrate the potential of the used numerical tool to obtain the desired designed structure or technological process.

Tree community variation in a tropical continental island according to slope aspect and human interference.

PubMed

Gonçalves, Nathan B; Nettesheim, Felipe C; Conde, Marilena M S

2018-01-01

Associating description of unrecorded tropical tree community structure to sampling approaches that can help determine mechanisms behind floristic variation is important to further the comprehension of how plant species coexist at tropical forests. Thus, this study had the goals of (i) evaluating tree community structure on the continental island of Marambaia (23°4'37.09"S; 43°59'2.15"W) and (ii) testing the prediction that there are local scale changes in a tropical tree community structure between slopes facing different geographic orientation and with distinct human interference history. We established 60 (0.6 ha) sampling units in three different slope sites with distinct predominant geographic orientation and human interference. We sampled all woody trees with diameter at breast height (dbh) ≥ 5 cm. We found a total of 1.170 individuals representing 220 species, 120 genera and 50 families. The overall tree community structure and structural descriptors (abundance of individuals, basal area, species richness and diversity) varied extensively between the sites. The evidence presented here supports that local scale topography variations and human interference history can be important factors contributing to the known floristic heterogeneity of the Atlantic Rainforest. Future work on the study area should focus on disentangling effects from distinct causal factors over tree community variation and species occurrence.

Porous photonic crystal external cavity laser biosensor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Qinglan; Peh, Jessie; Hergenrother, Paul J.

2016-08-15

We report the design, fabrication, and testing of a photonic crystal (PC) biosensor structure that incorporates a porous high refractive index TiO{sub 2} dielectric film that enables immobilization of capture proteins within an enhanced surface-area volume that spatially overlaps with the regions of resonant electromagnetic fields where biomolecular binding can produce the greatest shifts in photonic crystal resonant wavelength. Despite the nanoscale porosity of the sensor structure, the PC slab exhibits narrowband and high efficiency resonant reflection, enabling the structure to serve as a wavelength-tunable element of an external cavity laser. In the context of sensing small molecule interactions withmore » much larger immobilized proteins, we demonstrate that the porous structure provides 3.7× larger biosensor signals than an equivalent nonporous structure, while the external cavity laser (ECL) detection method provides capability for sensing picometer-scale shifts in the PC resonant wavelength caused by small molecule binding. The porous ECL achieves a record high figure of merit for label-free optical biosensors.« less

Numerical analyses of ventilated cavitation over a 2-D NACA0015 hydrofoil using two turbulence modeling methods

NASA Astrophysics Data System (ADS)

Yang, Dan-dan; Yu, An; Ji, Bin; Zhou, Jia-jian; Luo, Xian-wu

2018-04-01

The present paper studies the ventilated cavitation over a NACA0015 hydrofoil by numerical methods. The corresponding cavity evolutions are obtained at three ventilation rates by using the level set method. To depict the complicated turbulent flow structure, the filter-based density corrected model (FBDCM) and the modified partially-averaged Navier-Stokes (MPANS) model are applied in the present numerical analyses. It is indicated that the predicted results of the cavitation shedding dynamics by both turbulence models agree fairly well with the experimental data. It is also noted that the shedding frequency and the super cavity length predicted by the MPANS method are closer to the experiment data as compared to that predicted by the FBDCM model. The simulation results show that in the ventilated cavitation, the vapor cavity and the air cavity have the same shedding frequency. As the ventilated rate increases, the vapor cavity is depressed rapidly. The cavitation-vortex interaction in the ventilated cavitation is studied based on the vorticity transport equation (VTE) and the Lagrangian coherent structure (LCS). Those results demonstrate that the vortex dilatation and baroclinic torque terms are highly dependent on the evolution of the cavitation. In addition, from the LCSs and the tracer particles in the flow field, one may see the process from the attached cavity to the cloud cavity.

Space shuttle cavity assessment test program

NASA Technical Reports Server (NTRS)

Scheps, P. B.

1976-01-01

In order to obtain basic radiation properties of the radiator/payload bay door cavity, three tests were conducted on a full-size structural simulator of the cavity. There were three tests conducted: (1) CATA used for determination of exchange factors, absorbed solar flux, and door covering influences, (2) quartz lamp array calibrated to provide IR flux distribution on CATA, and (3) retest with radiometer array for background flux measurement.

Patterns and Drivers of Tree Mortality in Iberian Forests: Climatic Effects Are Modified by Competition

PubMed Central

Ruiz-Benito, Paloma; Lines, Emily R.; Gómez-Aparicio, Lorena; Zavala, Miguel A.; Coomes, David A.

2013-01-01

Tree mortality is a key process underlying forest dynamics and community assembly. Understanding how tree mortality is driven by simultaneous drivers is needed to evaluate potential effects of climate change on forest composition. Using repeat-measure information from c. 400,000 trees from the Spanish Forest Inventory, we quantified the relative importance of tree size, competition, climate and edaphic conditions on tree mortality of 11 species, and explored the combined effect of climate and competition. Tree mortality was affected by all of these multiple drivers, especially tree size and asymmetric competition, and strong interactions between climate and competition were found. All species showed L-shaped mortality patterns (i.e. showed decreasing mortality with tree size), but pines were more sensitive to asymmetric competition than broadleaved species. Among climatic variables, the negative effect of temperature on tree mortality was much larger than the effect of precipitation. Moreover, the effect of climate (mean annual temperature and annual precipitation) on tree mortality was aggravated at high competition levels for all species, but especially for broadleaved species. The significant interaction between climate and competition on tree mortality indicated that global change in Mediterranean regions, causing hotter and drier conditions and denser stands, could lead to profound effects on forest structure and composition. Therefore, to evaluate the potential effects of climatic change on tree mortality, forest structure must be considered, since two systems of similar composition but different structure could radically differ in their response to climatic conditions. PMID:23451096

Host tree phenology affects vascular epiphytes at the physiological, demographic and community level

PubMed Central

Einzmann, Helena J. R.; Beyschlag, Joachim; Hofhansl, Florian; Wanek, Wolfgang; Zotz, Gerhard

2015-01-01

The processes that govern diverse tropical plant communities have rarely been studied in life forms other than trees. Structurally dependent vascular epiphytes, a major part of tropical biodiversity, grow in a three-dimensional matrix defined by their hosts, but trees differ in their architecture, bark structure/chemistry and leaf phenology. We hypothesized that the resulting seasonal differences in microclimatic conditions in evergreen vs. deciduous trees would affect epiphytes at different levels, from organ physiology to community structure. We studied the influence of tree leaf phenology on vascular epiphytes on the Island of Barro Colorado, Panama. Five tree species were selected, which were deciduous, semi-deciduous or evergreen. The crowns of drought-deciduous trees, characterized by sunnier and drier microclimates, hosted fewer individuals and less diverse epiphyte assemblages. Differences were also observed at a functional level, e.g. epiphyte assemblages in deciduous trees had larger proportions of Crassulacean acid metabolism species and individuals. At the population level a drier microclimate was associated with lower individual growth and survival in a xerophytic fern. Some species also showed, as expected, lower specific leaf area and higher δ13C values when growing in deciduous trees compared with evergreen trees. As hypothesized, host tree leaf phenology influences vascular epiphytes at different levels. Our results suggest a cascading effect of tree composition and associated differences in tree phenology on the diversity and functioning of epiphyte communities in tropical lowland forests. PMID:25392188

Estimating average tree crown size using spatial information from Ikonos and QuickBird images: Across-sensor and across-site comparisons

Treesearch

Conghe Song; Matthew B. Dickinson; Lihong Su; Su Zhang; Daniel Yaussey

2010-01-01

The forest canopy is the medium for energy, mass, and momentum exchanges between the forest ecosystem and the atmosphere. Tree crown size is a critical aspect of canopy structure that significantly influences these biophysical processes in the canopy. Tree crown size is also strongly related to other canopy structural parameters, such as tree height, diameter at breast...

Plasma processing of superconducting radio frequency cavities

NASA Astrophysics Data System (ADS)

Upadhyay, Janardan

The development of plasma processing technology of superconducting radio frequency (SRF) cavities not only provides a chemical free and less expensive processing method, but also opens up the possibility for controlled modification of the inner surfaces of the cavity for better superconducting properties. The research was focused on the transition of plasma etching from two dimensional flat surfaces to inner surfaces of three dimensional (3D) structures. The results could be applicable to a variety of inner surfaces of 3D structures other than SRF cavities. Understanding the Ar/Cl2 plasma etching mechanism is crucial for achieving the desired modification of Nb SRF cavities. In the process of developing plasma etching technology, an apparatus was built and a method was developed to plasma etch a single cell Pill Box cavity. The plasma characterization was done with the help of optical emission spectroscopy. The Nb etch rate at various points of this cavity was measured before processing the SRF cavity. Cylindrical ring-type samples of Nb placed on the inner surface of the outer wall were used to measure the dependence of the process parameters on plasma etching. The measured etch rate dependence on the pressure, rf power, dc bias, temperature, Cl2 concentration and diameter of the inner electrode was determined. The etch rate mechanism was studied by varying the temperature of the outer wall, the dc bias on the inner electrode and gas conditions. In a coaxial plasma reactor, uniform plasma etching along the cylindrical structure is a challenging task due to depletion of the active radicals along the gas flow direction. The dependence of etch rate uniformity along the cylindrical axis was determined as a function of process parameters. The formation of dc self-biases due to surface area asymmetry in this type of plasma and its variation on the pressure, rf power and gas composition was measured. Enhancing the surface area of the inner electrode to reduce the asymmetry was studied by changing the contour of the inner electrode. The optimized contour of the electrode based on these measurements was chosen for SRF cavity processing.

[Sectional structure of a tree. Model analysis of the vertical biomass distribution].

PubMed

Galitskiĭ, V V

2010-01-01

A model has been proposed for the architecture of a tree in which virtual trees appear rhythmically on the treetop. Each consecutive virtual tree is a part of the previous tree. The difference between two adjacent virtual trees is a section--an element of the real tree structure. In case of a spruce, the section represents a verticil of a stem with the corresponding internode. Dynamics of a photosynthesizing part of the physiologically active biomass of each section differ from the corresponding dynamics of the virtual trees and the whole real tree. If the tree biomass dynamics has a sigma-shaped form, then the section dynamics have to be bell-shaped. It means that the lower stem should accordingly become bare, which is typically observed in nature. Model analysis reveals the limiting, in the age, form of trees to be an "umbrella". It can be observed in nature and is an outcome of physical limitation of the tree height combined with the sigma-shaped form of the tree biomass dynamics. Variation of model parameters provides for various forms of the tree biomass distribution along the height, which can be associated with certain biological species of trees.

Cavity Processing and Preparation of 650 MHz Elliptical Cell Cavities for PIP-II

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rowe, Allan; Chandrasekaran, Saravan Kumar; Grassellino, Anna

The PIP-II project at Fermilab requires fifteen 650 MHz SRF cryomodules as part of the 800 MeV LINAC that will provide a high intensity proton beam to the Fermilab neutrino program. A total of fifty-seven high-performance SRF cavities will populate the cryomodules and will operate in both pulsed and continuous wave modes. These cavities will be processed and prepared for performance testing utilizing adapted cavity processing infrastructure already in place at Fermilab and Argonne. The processing recipes implemented for these structures will incorporate state-of-the art processing and cleaning techniques developed for 1.3 GHz SRF cavities for the ILC, XFEL, andmore » LCLS-II projects. This paper describes the details of the processing recipes and associated chemistry, heat treatment, and cleanroom processes at the Fermilab and Argonne cavity processing facilities. This paper also presents single and multi-cell cavity test results with quality factors above 5·10¹⁰ and accelerating gradients above 30 MV/m.« less

Effect of granular media on the vibrational response of a resonant structure: theory and experiment.

PubMed

Valenza, John J; Hsu, Chaur-Jian; Johnson, David Linton

2010-11-01

The acoustic response of a structure that contains a cavity filled with a loose granular material is analyzed. The inputs to the theory are the effective masses of each subsystem: that of the empty-cavity resonating structure and that of the granular medium within the cavity. This theory accurately predicts the frequencies, widths, and relative amplitudes of the various flexural mode resonances observed with rectangular bars, each having a cavity filled with loose tungsten granules. Inasmuch as the dominant mechanism for damping is due to adsorbed water at the grain-grain contacts, the significant effects of humidity on both the effective mass of the granular medium as well as on the response of the grain-loaded bars are monitored. Here, depending upon the humidity and the preparation protocol, it is possible to observe one, two, or three distinct resonances in a wide frequency range (1-5 kHz) over which the empty bar has but one resonance. These effects are understood in terms of the theoretical framework, which may simplify in terms of perturbation theories.

Hollow microgels squeezed in overcrowded environments

NASA Astrophysics Data System (ADS)

Scotti, A.; Brugnoni, M.; Rudov, A. A.; Houston, J. E.; Potemkin, I. I.; Richtering, W.

2018-05-01

We study how a cavity changes the response of hollow microgels with respect to regular ones in overcrowded environments. The structural changes of hollow poly(N-isopropylacrylamide) microgels embedded within a matrix of regular ones are probed by small-angle neutron scattering with contrast variation. The form factors of the microgels at increasing compressions are directly measured. The decrease of the cavity size with increasing concentration shows that the hollow microgels have an alternative way with respect to regular cross-linked ones to respond to the squeezing due to their neighbors. The structural changes under compression are supported by the radial density profiles obtained with computer simulations. The presence of the cavity offers to the polymer network the possibility to expand toward the center of the microgels in response to the overcrowded environment. Furthermore, upon increasing compression, a two step transition occurs: First the microgels are compressed but the internal structure is unchanged; then, further compression causes the fuzzy shell to collapse completely and reduce the size of the cavity. Computer simulations also allow studying higher compression degrees than in the experiments leading to the microgel's faceting.

Optoelectronics Research Center

DTIC Science & Technology

1992-05-16

dot structures in Si and related materials. External cavity operation of diode lasers has provided a wealth of information on internal device physics...new class of optical information processing. A major feature of the AFOSR OERC has been interactions with the Air Force Phillips Laboratory and with...structures in Si and related materials. External cavity operation of diode lasers has provided a wealth of information on internal device physics and

On the pull-out of fibers with fractal-tree structure and the interference of strength and fracture toughness of composites

NASA Astrophysics Data System (ADS)

Fe, Shaoyun; Zhou, Benlian; Lung, Chiwei

1992-06-01

An approximate theory of pull-out of fiber with fractal-tree structure from a matrix is developed with the aim of quantifying the effects of the fractal-tree structure of the fiber. In the experimental investigation of the pull-out of the synthetic fiber with fractal-tree structure, it was generally observed that the force and energy of fiber pullout increase with the branching angle. The application of this theory to experiment is successful. The strength and fracture toughness of composites reinforced by this kind of fiber are inferred to be greater than those of composites reinforced by plane fibers.

Structural Evolution of Nanoscale Zero-Valent Iron (nZVI) in Anoxic Co2+ Solution: Interactional Performance and Mechanism

PubMed Central

Zhang, Yalei; Chen, Wen; Dai, Chaomeng; Zhou, Chuanlong; Zhou, Xuefei

2015-01-01

The structures of nanoscale zero-valent iron (nZVI) particles evolving during reactions, and the reactions are influenced by the evolved structures. To understand the removal process in detail, it is important to investigate the relationships between the reactions and structural evolution. Using high resolution-transmission electron microscopy (HR-TEM), typical evolved structures (sheet coprecipitation and cavity corrosion) of nZVI in anoxic Co2+ solutions were revealed. The system pH (pH measured in mixture), which controls the stability of coprecipitation and the nZVI corrosion rate, were found to be the determining factors of structural evolutions. X-ray photoelectron spectroscopy (XPS) results indicated that the formation and dissolution of sheet structure impacts on the ratio of Fe(0) on the nZVI surface and the surface Co2+ reduction. The cavity structure provides the possibility of Co migration from the surface to the bulk of nZVI, leading to continuous removal. Subacidity conditions could accelerate the evolution and improve the removal; the results of structurally controlled reactions further indicated that the removal was suspended by the sheet structure and enhanced by cavity structure. The results and discussion in this paper revealed the “structural influence” crucial for the full and dynamical understanding of nZVI reactions. PMID:26355955

Structural Evolution of Nanoscale Zero-Valent Iron (nZVI) in Anoxic Co(2+) Solution: Interactional Performance and Mechanism.

PubMed

Zhang, Yalei; Chen, Wen; Dai, Chaomeng; Zhou, Chuanlong; Zhou, Xuefei

2015-09-10

The structures of nanoscale zero-valent iron (nZVI) particles evolving during reactions, and the reactions are influenced by the evolved structures. To understand the removal process in detail, it is important to investigate the relationships between the reactions and structural evolution. Using high resolution-transmission electron microscopy (HR-TEM), typical evolved structures (sheet coprecipitation and cavity corrosion) of nZVI in anoxic Co(2+) solutions were revealed. The system pH (pH measured in mixture), which controls the stability of coprecipitation and the nZVI corrosion rate, were found to be the determining factors of structural evolutions. X-ray photoelectron spectroscopy (XPS) results indicated that the formation and dissolution of sheet structure impacts on the ratio of Fe(0) on the nZVI surface and the surface Co(2+) reduction. The cavity structure provides the possibility of Co migration from the surface to the bulk of nZVI, leading to continuous removal. Subacidity conditions could accelerate the evolution and improve the removal; the results of structurally controlled reactions further indicated that the removal was suspended by the sheet structure and enhanced by cavity structure. The results and discussion in this paper revealed the "structural influence" crucial for the full and dynamical understanding of nZVI reactions.

Structural Evolution of Nanoscale Zero-Valent Iron (nZVI) in Anoxic Co2+ Solution: Interactional Performance and Mechanism

NASA Astrophysics Data System (ADS)

Zhang, Yalei; Chen, Wen; Dai, Chaomeng; Zhou, Chuanlong; Zhou, Xuefei

2015-09-01

The structures of nanoscale zero-valent iron (nZVI) particles evolving during reactions, and the reactions are influenced by the evolved structures. To understand the removal process in detail, it is important to investigate the relationships between the reactions and structural evolution. Using high resolution-transmission electron microscopy (HR-TEM), typical evolved structures (sheet coprecipitation and cavity corrosion) of nZVI in anoxic Co2+ solutions were revealed. The system pH (pH measured in mixture), which controls the stability of coprecipitation and the nZVI corrosion rate, were found to be the determining factors of structural evolutions. X-ray photoelectron spectroscopy (XPS) results indicated that the formation and dissolution of sheet structure impacts on the ratio of Fe(0) on the nZVI surface and the surface Co2+ reduction. The cavity structure provides the possibility of Co migration from the surface to the bulk of nZVI, leading to continuous removal. Subacidity conditions could accelerate the evolution and improve the removal; the results of structurally controlled reactions further indicated that the removal was suspended by the sheet structure and enhanced by cavity structure. The results and discussion in this paper revealed the “structural influence” crucial for the full and dynamical understanding of nZVI reactions.

High Power RF Testing of A 3-Cell Superconducting Traveling Wave Accelerating Structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kanareykin, Alex; Kostin, Romna; Avrakhov, Pavel

Euclid Techlabs has completed the Phase II SBIR project, entitled “High Power RF Testing of a 3-Cell Superconducting Traveling Wave Accelerating Structure” under Grant #DE-SC0006300. In this final technical report, we summarize the major achievements of Phase I of the project and review the details of Phase II of the project. The accelerating gradient in a superconducting structure is limited mainly by quenching, i.e., by the maximum surface RF magnetic field. Various techniques have been developed to increase the gradient. A traveling wave accelerating SC structure with a feedback waveguide was suggested to allow an increased transit time factor andmore » ultimately, a maximum gradient that is 22%-24% higher than in the best of the time standing wave SRF cavity solution. The proposed structure has an additional benefit in that it can be fabricated much longer than the standing wave ones that are limited by the field flatness factor. Taken together, all of these factors will result in a significant overall length and, correspondingly cost reduction of the SRF based linear collider ILC or SRF technology based FELs. In Phase I of this project, a 3-cell L-band SC traveling wave cavity was designed. Cavity shape, surface field ratios, inter-cell coupling coefficients, accelerating field flatness have been reviewed with the analysis of tuning issues. Moreover, the technological aspects of SC traveling wave accelerating structure fabrication have been studied. As the next step in the project, the Phase II experimental program included engineering design, manufacturing, surface processing and high gradient testing. Euclid Techlabs, LLC contracted AES, Inc. to manufacture two niobium cavities. Euclid Techlabs cold tested traveling wave regime in the cavity, and the results showed very good agreement with mathematical model specially developed for superconducting traveling wave cavity performance analysis. Traveling wave regime was adjusted by amplitude and phase variation of input signals due to application of developed power feeding scheme. Traveling wave excitation, adjustment and detection were successfully tested. Auxiliary equipment required for high power test such as the tuner, power and measure couplers, holding plates for VTS at Fermilab were developed and successfully tested. Both TW SRF cavities were fabricated by AES, Inc. without stiffening ribs before this company closed their production facility. Currently Roark EB welding company is finishing now welding process of the cavity for the high power testing at Fermilab VTS. Successful demonstration of high gradients in the 3-cell cavity along with studies of traveling wave excitation and tuning issues is leading to successful development of superconducting traveling wave technology for ILC applications and other future high energy SC accelerators.« less

36 CFR 293.6 - Commercial enterprises, roads, motor vehicles, motorized equipment, motorboats, aircraft...

Code of Federal Regulations, 2010 CFR

2010-07-01

..., structures, and cutting of trees. 293.6 Section 293.6 Parks, Forests, and Public Property FOREST SERVICE... trees. Except as provided in the Wilderness Act, subsequent legislation establishing a particular... from aircraft; no structures or installations; and no cutting of trees for nonwilderness purposes. (a...

Structural Equation Model Trees

ERIC Educational Resources Information Center

Brandmaier, Andreas M.; von Oertzen, Timo; McArdle, John J.; Lindenberger, Ulman

2013-01-01

In the behavioral and social sciences, structural equation models (SEMs) have become widely accepted as a modeling tool for the relation between latent and observed variables. SEMs can be seen as a unification of several multivariate analysis techniques. SEM Trees combine the strengths of SEMs and the decision tree paradigm by building tree…

36 CFR 293.6 - Commercial enterprises, roads, motor vehicles, motorized equipment, motorboats, aircraft...

Code of Federal Regulations, 2014 CFR

2014-07-01

..., structures, and cutting of trees. 293.6 Section 293.6 Parks, Forests, and Public Property FOREST SERVICE... trees. Except as provided in the Wilderness Act, subsequent legislation establishing a particular... from aircraft; no structures or installations; and no cutting of trees for nonwilderness purposes. (a...

36 CFR 293.6 - Commercial enterprises, roads, motor vehicles, motorized equipment, motorboats, aircraft...

Code of Federal Regulations, 2012 CFR

2012-07-01

..., structures, and cutting of trees. 293.6 Section 293.6 Parks, Forests, and Public Property FOREST SERVICE... trees. Except as provided in the Wilderness Act, subsequent legislation establishing a particular... from aircraft; no structures or installations; and no cutting of trees for nonwilderness purposes. (a...

36 CFR 293.6 - Commercial enterprises, roads, motor vehicles, motorized equipment, motorboats, aircraft...

Code of Federal Regulations, 2013 CFR

2013-07-01

..., structures, and cutting of trees. 293.6 Section 293.6 Parks, Forests, and Public Property FOREST SERVICE... trees. Except as provided in the Wilderness Act, subsequent legislation establishing a particular... from aircraft; no structures or installations; and no cutting of trees for nonwilderness purposes. (a...

Tree growth visualization

Treesearch

L. Linsen; B.J. Karis; E.G. McPherson; B. Hamann

2005-01-01

In computer graphics, models describing the fractal branching structure of trees typically exploit the modularity of tree structures. The models are based on local production rules, which are applied iteratively and simultaneously to create a complex branching system. The objective is to generate three-dimensional scenes of often many realistic- looking and non-...

Simulation Studies of the Effect of Forest Spatial Structure on InSAR Signature

NASA Technical Reports Server (NTRS)

Sun, Guoqing; Liu, Dawei; Ranson, K. Jon; Koetz, Benjamin

2007-01-01

The height of scattering phase retrieved from InSAR data is considered being correlated with the tree height and the spatial structure of the forest stand. Though some researchers have used simple backscattering models to estimate tree height from the height of scattering center, the effect of forest spatial structure on InSAR data is not well understood yet. A three-dimensional coherent radar backscattering model for forest canopies based on realistic three-dimensional scene was used to investigate the effect in this paper. The realistic spatial structure of forest canopies was established either by field measurements (stem map) or through use of forest growth model. Field measurements or a forest growth model parameterized using local environmental parameters provides information of forest species composition and tree sizes in certain growth phases. A fractal tree model (L-system) was used to simulate individual 3- D tree structure of different ages or heights. Trees were positioned in a stand in certain patterns resulting in a 3-D medium of discrete scatterers. The radar coherent backscatter model took the 3-D forest scene as input and simulates the coherent radar backscattering signature. Interferometric SAR images of 3D scenes were simulated and heights of scattering phase centers were estimated from the simulated InSAR data. The effects of tree height, crown cover, crown depth, and the spatial distribution patterns of trees on the scattering phase center were analyzed. The results will be presented in the paper.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sands, M.; Rees, J.

A rather simple electronic bench experiment is proposed for obtaining a measure of the impulse energy loss of a stored particle bunch to an rf cavity or other vacuum-chamber structure--the so-called "cavity radiation". The proposed method is analyzed in some detail.

CARTAM. The Cartesian Access Method for Data Structures with n-dimensional Keys.

DTIC Science & Technology

1979-01-01

become apparent later, I have chosen to store structural information in an explicit binary tree , with modifications. instead of the left and right links of...the usual binary tree , I use the child and twin pointers of a ring structure or circular list. This ring structure as illustrated in figure 3-1* also...Since the file is being stored as an explicit binary tree , note that additional records are being generated, and the concept of an Ni-thm record for

Structural system reliability calculation using a probabilistic fault tree analysis method

NASA Technical Reports Server (NTRS)

Torng, T. Y.; Wu, Y.-T.; Millwater, H. R.

1992-01-01

The development of a new probabilistic fault tree analysis (PFTA) method for calculating structural system reliability is summarized. The proposed PFTA procedure includes: developing a fault tree to represent the complex structural system, constructing an approximation function for each bottom event, determining a dominant sampling sequence for all bottom events, and calculating the system reliability using an adaptive importance sampling method. PFTA is suitable for complicated structural problems that require computer-intensive computer calculations. A computer program has been developed to implement the PFTA.

Dissecting the space-time structure of tree-ring datasets using the partial triadic analysis.

PubMed

Rossi, Jean-Pierre; Nardin, Maxime; Godefroid, Martin; Ruiz-Diaz, Manuela; Sergent, Anne-Sophie; Martinez-Meier, Alejandro; Pâques, Luc; Rozenberg, Philippe

2014-01-01

Tree-ring datasets are used in a variety of circumstances, including archeology, climatology, forest ecology, and wood technology. These data are based on microdensity profiles and consist of a set of tree-ring descriptors, such as ring width or early/latewood density, measured for a set of individual trees. Because successive rings correspond to successive years, the resulting dataset is a ring variables × trees × time datacube. Multivariate statistical analyses, such as principal component analysis, have been widely used for extracting worthwhile information from ring datasets, but they typically address two-way matrices, such as ring variables × trees or ring variables × time. Here, we explore the potential of the partial triadic analysis (PTA), a multivariate method dedicated to the analysis of three-way datasets, to apprehend the space-time structure of tree-ring datasets. We analyzed a set of 11 tree-ring descriptors measured in 149 georeferenced individuals of European larch (Larix decidua Miller) during the period of 1967-2007. The processing of densitometry profiles led to a set of ring descriptors for each tree and for each year from 1967-2007. The resulting three-way data table was subjected to two distinct analyses in order to explore i) the temporal evolution of spatial structures and ii) the spatial structure of temporal dynamics. We report the presence of a spatial structure common to the different years, highlighting the inter-individual variability of the ring descriptors at the stand scale. We found a temporal trajectory common to the trees that could be separated into a high and low frequency signal, corresponding to inter-annual variations possibly related to defoliation events and a long-term trend possibly related to climate change. We conclude that PTA is a powerful tool to unravel and hierarchize the different sources of variation within tree-ring datasets.

Are tree ontogenetic structure and allometric relationship independent of vegetation formation type? A case study with Cordia oncocalyx in the Brazilian caatinga

NASA Astrophysics Data System (ADS)

Silveira, Andréa P.; Martins, Fernando R.; Araújo, Francisca S.

2012-08-01

In temperate and tropical rainforests, ontogenetic structure and allometry during tree ontogeny are often associated with light gradients. Light is not considered a limiting resource in deciduous thorny woodland (DTW), but establishment and growth occur during a short rainy period, when the canopy is fully leaved and light in the understory may be modified. Our aim was to investigate whether the light gradient in DTW and the biomechanical limitations of tree growth would be enough to produce an ontogenetic structure and allometric growth similar to rainforest canopy trees. We investigated the ontogenetic stages and diameter-height relationship of Cordia oncocalyx (Boraginaceae), a dominant canopy tree of the DTW of semiarid northeastern Brazil. We tagged, measured and classified the ontogenetic stages of 2.895 individuals in a 1 ha area (5°6'58.1″S and 40°52'19.4″W). In the rainy season only 4.7% of the light falling on the canopy reached the ground. Initial ontogenetic stages, mainly infant (50.9%) and seedling (42.1%), were predominant in the population, with the remaining 7% distributed among juvenile, immature, virginile and reproductive. The ontogenetic structure was similar to that of rainforest tree species, but the population formed both permanent seed and infant banks in response to long dry periods and erratic rainy spells. Like many other Boraginaceae tree species in tropical rainforests, C. oncocalyx has a Prévost architectural model, but allometric growth was quite different from rainforest trees. C. oncocalyx invested slightly more in diameter at first, then in height and finally invested greatly in diameter and attained an asymptotic height. The continued high investment in diameter growth at late stages and the asymptotic height point to low tree density and more frequent xylem embolism as the main drivers of tree allometric shape in DTW. This indicates that tree ontogenetic structure and allometric relationships depend on vegetation formation type.

Effective bichromatic potential for ultra-high Q-factor photonic crystal slab cavities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alpeggiani, Filippo, E-mail: filippo.alpeggiani01@ateneopv.it; Andreani, Lucio Claudio; Gerace, Dario

2015-12-28

We introduce a confinement mechanism in photonic crystal slab cavities, which relies on the superposition of two incommensurate one-dimensional lattices in a line-defect waveguide. It is shown that the resulting photonic profile realizes an effective quasi-periodic bichromatic potential for the electromagnetic field confinement yielding extremely high quality (Q) factor nanocavities, while simultaneously keeping the mode volume close to the diffraction limit. We apply these concepts to pillar- and hole-based photonic crystal slab cavities, respectively, and a Q-factor improvement by over an order of magnitude is shown over existing designs, especially in pillar-based structures. Thanks to the generality and easy adaptationmore » of such confinement mechanism to a broad class of cavity designs and photonic lattices, this work opens interesting routes for applications where enhanced light–matter interaction in photonic crystal structures is required.« less

Cavity-enhanced Raman microscopy of individual carbon nanotubes

PubMed Central

Hümmer, Thomas; Noe, Jonathan; Hofmann, Matthias S.; Hänsch, Theodor W.; Högele, Alexander; Hunger, David

2016-01-01

Raman spectroscopy reveals chemically specific information and provides label-free insight into the molecular world. However, the signals are intrinsically weak and call for enhancement techniques. Here, we demonstrate Purcell enhancement of Raman scattering in a tunable high-finesse microcavity, and utilize it for molecular diagnostics by combined Raman and absorption imaging. Studying individual single-wall carbon nanotubes, we identify crucial structural parameters such as nanotube radius, electronic structure and extinction cross-section. We observe a 320-times enhanced Raman scattering spectral density and an effective Purcell factor of 6.2, together with a collection efficiency of 60%. Potential for significantly higher enhancement, quantitative signals, inherent spectral filtering and absence of intrinsic background in cavity-vacuum stimulated Raman scattering render the technique a promising tool for molecular imaging. Furthermore, cavity-enhanced Raman transitions involving localized excitons could potentially be used for gaining quantum control over nanomechanical motion and open a route for molecular cavity optomechanics. PMID:27402165

Cliques of Neurons Bound into Cavities Provide a Missing Link between Structure and Function.

PubMed

Reimann, Michael W; Nolte, Max; Scolamiero, Martina; Turner, Katharine; Perin, Rodrigo; Chindemi, Giuseppe; Dłotko, Paweł; Levi, Ran; Hess, Kathryn; Markram, Henry

2017-01-01

The lack of a formal link between neural network structure and its emergent function has hampered our understanding of how the brain processes information. We have now come closer to describing such a link by taking the direction of synaptic transmission into account, constructing graphs of a network that reflect the direction of information flow, and analyzing these directed graphs using algebraic topology. Applying this approach to a local network of neurons in the neocortex revealed a remarkably intricate and previously unseen topology of synaptic connectivity. The synaptic network contains an abundance of cliques of neurons bound into cavities that guide the emergence of correlated activity. In response to stimuli, correlated activity binds synaptically connected neurons into functional cliques and cavities that evolve in a stereotypical sequence toward peak complexity. We propose that the brain processes stimuli by forming increasingly complex functional cliques and cavities.

Foam patterns

DOEpatents

Chaudhry, Anil R; Dzugan, Robert; Harrington, Richard M; Neece, Faurice D; Singh, Nipendra P; Westendorf, Travis

2013-11-26

A method of creating a foam pattern comprises mixing a polyol component and an isocyanate component to form a liquid mixture. The method further comprises placing a temporary core having a shape corresponding to a desired internal feature in a cavity of a mold and inserting the mixture into the cavity of the mold so that the mixture surrounds a portion of the temporary core. The method optionally further comprises using supporting pins made of foam to support the core in the mold cavity, with such pins becoming integral part of the pattern material simplifying subsequent processing. The method further comprises waiting for a predetermined time sufficient for a reaction from the mixture to form a foam pattern structure corresponding to the cavity of the mold, wherein the foam pattern structure encloses a portion of the temporary core and removing the temporary core from the pattern independent of chemical leaching.

VC-dimension of univariate decision trees.

PubMed

Yildiz, Olcay Taner

2015-02-01

In this paper, we give and prove the lower bounds of the Vapnik-Chervonenkis (VC)-dimension of the univariate decision tree hypothesis class. The VC-dimension of the univariate decision tree depends on the VC-dimension values of its subtrees and the number of inputs. Via a search algorithm that calculates the VC-dimension of univariate decision trees exhaustively, we show that our VC-dimension bounds are tight for simple trees. To verify that the VC-dimension bounds are useful, we also use them to get VC-generalization bounds for complexity control using structural risk minimization in decision trees, i.e., pruning. Our simulation results show that structural risk minimization pruning using the VC-dimension bounds finds trees that are more accurate as those pruned using cross validation.

Conceptual design of a high real-estate gradient cavity for a SRF ERL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Chen; Ben-Zvi, Ilan; Hao, Yue

The term “real-estate gradient” is used to describe the energy gain provided by an accelerating structure per actual length it takes in the accelerator. given that the length of the tunnel available for the accelerator is constrained, the real-estate gradient is an important measure of the efficiency of a given accelerator structure. When designing an accelerating cavity to be efficient in this sense, the unwanted Higher Order Mode (HOM) fields should be reduced by suitable HOM dampers. This is a particularly important consideration for high current operation. The additional RF components might take longitude space and reduce the total acceleratingmore » efficiency. We describe a new high efficiency 5-cell cavity with the dampers included. The total length of the cavity is reduced by 13% as compared to a more conventional design without compromising the cavity fundamental-mode performance. In addition, the HOM impedance is reduced for a higher Beam-Break-Up (BBU) threshold of operating current. In this article, we consider an example, a possible application at the eRHIC Energy Recovery Linac (ERL).« less

Conceptual design of a high real-estate gradient cavity for a SRF ERL

NASA Astrophysics Data System (ADS)

Xu, Chen; Ben-Zvi, Ilan; Hao, Yue; Xin, Tianmu; Wang, Haipeng

2017-10-01

The term "real-estate gradient" is used to describe the energy gain provided by an accelerating structure per actual length it takes in the accelerator. given that the length of the tunnel available for the accelerator is constrained, the real-estate gradient is an important measure of the efficiency of a given accelerator structure. When designing an accelerating cavity to be efficient in this sense, the unwanted Higher Order Mode (HOM) fields should be reduced by suitable HOM dampers. This is a particularly important consideration for high current operation. The additional RF components might take longitude space and reduce the total accelerating efficiency. We describe a new high efficiency 5-cell cavity with the dampers included. The total length of the cavity is reduced by 13% as compared to a more conventional design without compromising the cavity fundamental-mode performance. In addition, the HOM impedance is reduced for a higher Beam-Break-Up (BBU) threshold of operating current. In this paper, we consider an example, a possible application at the eRHIC Energy Recovery Linac (ERL).

Conceptual design of a high real-estate gradient cavity for a SRF ERL

DOE PAGES

Xu, Chen; Ben-Zvi, Ilan; Hao, Yue; ...

2017-07-19

The term “real-estate gradient” is used to describe the energy gain provided by an accelerating structure per actual length it takes in the accelerator. given that the length of the tunnel available for the accelerator is constrained, the real-estate gradient is an important measure of the efficiency of a given accelerator structure. When designing an accelerating cavity to be efficient in this sense, the unwanted Higher Order Mode (HOM) fields should be reduced by suitable HOM dampers. This is a particularly important consideration for high current operation. The additional RF components might take longitude space and reduce the total acceleratingmore » efficiency. We describe a new high efficiency 5-cell cavity with the dampers included. The total length of the cavity is reduced by 13% as compared to a more conventional design without compromising the cavity fundamental-mode performance. In addition, the HOM impedance is reduced for a higher Beam-Break-Up (BBU) threshold of operating current. In this article, we consider an example, a possible application at the eRHIC Energy Recovery Linac (ERL).« less

Characterization of wafer-level bonded hermetic packages using optical leak detection

NASA Astrophysics Data System (ADS)

Duan, Ani; Wang, Kaiying; Aasmundtveit, Knut; Hoivik, Nils

2009-07-01

For MEMS devices required to be operated in a hermetic environment, one of the main reliability issues is related to the packaging methods applied. In this paper, an optical method for testing low volume hermetic cavities formed by anodic bonding between glass and SOI (silicon on insulator) wafer is presented. Several different cavity-geometry structures have been designed, fabricated and applied to monitor the hermeticity of wafer level anodic bonding. SOI wafer was used as the cap wafer on which the different-geometry structures were fabricated using standard MEMS technology. The test cavities were bonded using SOI wafers to glass wafers at 400C and 1000mbar pressure inside a vacuum bonding chamber. The bonding voltage varies from 200V to 600V. The bonding strength between glass and SOI wafer was mechanically tested using shear tester. The deformation amplitudes of the cavity cap surface were monitored by using an optical interferometer. The hermeticity of the glass-to-SOI wafer level bonding was characterized through observing the surface deformation in a 6 months period in atmospheric environment. We have observed a relatively stable micro vacuum-cavity.

Whole-tree distribution and temporal variation of non-structural carbohydrates in broadleaf evergreen trees.

PubMed

Smith, Merryn G; Miller, Rebecca E; Arndt, Stefan K; Kasel, Sabine; Bennett, Lauren T

2018-04-01

Non-structural carbohydrates (NSCs) form a fundamental yet poorly quantified carbon pool in trees. Studies of NSC seasonality in forest trees have seldom measured whole-tree NSC stocks and allocation among organs, and are not representative of all tree functional types. Non-structural carbohydrate research has primarily focussed on broadleaf deciduous and coniferous evergreen trees with distinct growing seasons, while broadleaf evergreen trees remain under-studied despite their different growth phenology. We measured whole-tree NSC allocation and temporal variation in Eucalyptus obliqua L'Hér., a broadleaf evergreen tree species typically occurring in mixed-age temperate forests, which has year-round growth and the capacity to resprout after fire. Our overarching objective was to improve the empirical basis for understanding the functional importance of NSC allocation and stock changes at the tree- and organ-level in this tree functional type. Starch was the principal storage carbohydrate and was primarily stored in the stem and roots of young (14-year-old) trees rather than the lignotuber, which did not appear to be a specialized starch storage organ. Whole-tree NSC stocks were depleted during spring and summer due to significant decreases in starch mass in the roots and stem, seemingly to support root and crown growth but potentially exacerbated by water stress in summer. Seasonality of stem NSCs differed between young and mature trees, and was not synchronized with stem basal area increments in mature trees. Our results suggest that the relative magnitude of seasonal NSC stock changes could vary with tree growth stage, and that the main drivers of NSC fluctuations in broadleaf evergreen trees in temperate biomes could be periodic disturbances such as summer drought and fire, rather than growth phenology. These results have implications for understanding post-fire tree recovery via resprouting, and for incorporating NSC pools into carbon models of mixed-age forests.

Self-localized structures in vertical-cavity surface-emitting lasers with external feedback.

PubMed

Paulau, P V; Gomila, D; Ackemann, T; Loiko, N A; Firth, W J

2008-07-01

In this paper, we analyze a model of broad area vertical-cavity surface-emitting lasers subjected to frequency-selective optical feedback. In particular, we analyze the spatio-temporal regimes arising above threshold and the existence and dynamical properties of cavity solitons. We build the bifurcation diagram of stationary self-localized states, finding that branches of cavity solitons emerge from the degenerate Hopf bifurcations marking the homogeneous solutions with maximal and minimal gain. These branches collide in a saddle-node bifurcation, defining a maximum pump current for soliton existence that lies below the threshold of the laser without feedback. The properties of these cavity solitons are in good agreement with those observed in recent experiments.