Post-fire monitoring of coast live oaks (Quercus agrifolia) burned in the 1993 Old Topanga Fire

Treesearch

Rosi Dagit

2002-01-01

The intensity of the 1993 Old Topanga Fire raised many concerns about the recovery and response of the coast live oak trees (Quercus agrifolia) and their understory vegetation. Preliminary information on the status of the trees 6 months post-fire has been previously reported. This report provides follow up assessment of the condition of the 90 trees...

Better chocolate through genomics

USDA-ARS?s Scientific Manuscript database

Theobroma cacao, the cacao or chocolate tree, is a tropical understory tree whose seeds are used to make chocolate. And like any important crop, cacao is the subject of much research. On September 15, 2010, scientists publicly released a preliminary sequence of the cacao genome--which contains all o...

Field note: irrigation of tree stands with groundwater containing 1,4-dioxane.

PubMed

Ferro, Ari M; Tammi, Carl E

2009-07-01

Coniferous and deciduous tree stands totaling 14 ha were recently planted on a closed landfill, and when mature, the stands are expected to be part of a natural treatment system for recovered groundwater. The trees would be irrigated at the rate of 189 L/min year-round with water containing 1,4-dioxane (< 10 mg/L), a compound that would be taken up and phytovolatilized by the trees. The water is moderately saline and contains elevated levels of manganese. This paper describes a concurrent series of preliminary studies, performed prior to the full-scale planting, to assess the feasibility of the phytoremediation system. Greenhouse experiments were carried out to identify tree species that can take up 1,4-dioxane and are tolerant of the water. Estimates were made of the area of the tree stand necessary to transpire the irrigation water plus precipitation. The landfill matrix was characterized in terms of its percolation rate and water holding capacity and based on those results salinity-modeling studies were carried out to estimate the fate and leaching potential of the various inorganic species that would accumulate in the root-zone of the trees. A pilot study, currently in progress on the landfill, suggested that the landfill cap is a suitable matrix for the establishment of large trees, and that the stands could be irrigated without the production of excess drainage.

Groundstory vegetation response to different thinning intensities in a minor stream bottom in Mississippi: a preliminary analysis

Treesearch

Brent R. Frey; Ellen M. Boerger

2015-01-01

Groundstory vegetation typically accounts for the greatest proportion of plant diversity in temperate forests, representing a critical structural component and mediating numerous ecosystem processes, including tree regeneration. The effects of thinning on groundstory vegetation have received limited study in bottomland hardwood stands. This study investigated...

Towards lidar-based mapping of tree age at the Arctic forest tundra ecotone.

NASA Astrophysics Data System (ADS)

Jensen, J.; Maguire, A.; Oelkers, R.; Andreu-Hayles, L.; Boelman, N.; D'Arrigo, R.; Griffin, K. L.; Jennewein, J. S.; Hiers, E.; Meddens, A. J.; Russell, M.; Vierling, L. A.; Eitel, J.

2017-12-01

Climate change may cause spatial shifts in the forest-tundra ecotone (FTE). To improve our ability to study these spatial shifts, information on tree demography along the FTE is needed. The objective of this study was to assess the suitability of lidar derived tree heights as a surrogate for tree age. We calculated individual tree age from 48 tree cores collected at basal height from white spruce (Picea glauca) within the FTE in northern Alaska. Tree height was obtained from terrestrial lidar scans (<1cm spatial resolution). The relationship between age and height was examined using a linear regression model forced through the origin. We found a very strong predictive relationship between tree height and age (R2 = 0.90, RMSE = 19.34 years) for trees that ranged between 14 to 230 years. Separate regression models were also developed for small (height < 3 m) and large trees (height >= 3 m), yielding strong predictive relationships between height and age (R2 = 0.86, RMSE 12.21 years, and R2 = 0.93, RMSE = 25.16 years, respectively). The slope coefficient for small and large tree models (16.83 and 12.98 years/m, respectively) indicate that small trees grow 1.3 times faster than large trees at these FTE study sites. Although a strong, predictive relationship between age and height is uncommon in light-limited forest environments, our findings suggest that the sparseness of trees within the FTE may explain the strong tree height-age relationships found herein. Further analysis of 36 additional tree cores recently collected within the FTE near Inuvik, Canada will be performed. Our preliminary analysis suggests that lidar derived tree height could be a reliable proxy for tree age at the FTE, thereby establishing a new technique for scaling tree structure and demographics across larger portions of this sensitive ecotone.

Preliminary studies of elevated atmospheric CO/sub 2/ on conifers, May 1-December 30, 1985

DOE Office of Scientific and Technical Information (OSTI.GOV)

Helms, J.A.

1985-01-01

The original scope of work consisted of two parts: Intensive physiological studies of Pinus ponderosa seedlings and saplings that were continuously exposed to various levels of CO/sub 2/ and SO/sub 2/ in open-topped chambers. Site selection and preparation in anticipation of DOE approval of a proposed 5-year project on effects of long-term exposure of forest vegetation to enhanced CO/sub 2/. Establishment of 5 Nelder-type plots utilizing 5 western conifers to permit fundamental studies on the physiological bases of tree-to-tree competition. Because the DOE project was not funded, site selection was abandoned.

Preliminary lumber recovery for dead and live Engelmann spruce.

Treesearch

James M. Cahill

1980-01-01

Lumber recovery, lumber grade distribution, and log values are presented for logs cut from dead and live Engelmann spruce (Picea engelmannii Parry ex Engelm.) trees. The dead sample includes standing and down trees killed by the Engelmann spruce beetle (Dendroctonus ruffipennis Kirby) over 20 years ago.

What controls stemflow? A LiDAR-based investigation of individual tree canopy structure, neighborhood conditions, and meteorological factors

NASA Astrophysics Data System (ADS)

Yankine, S. A.; Van Stan, J. T., II; Mesta, D. C.; Côté, J. F.; Hildebrandt, A.; Friesen, J.; Maldonado, G.

2017-12-01

Stemflow is a pointed hydrologic flux at the base of tree stems that has been linked to a host of biogeochemical processes in vegetated landscapes. Much work has been done to examine controls over stemflow water yield, finding three major factors: individual tree canopy structure, meteorological variables, and neighborhood conditions. However, the authors are unaware of any study to directly quantify all factors using a combination of terrestrial LiDAR and micrometeorological monitoring methods. This study directly quantifies individual Pinus palustris tree canopy characteristics (trunk volume and angle, branch volume and angle from 1st-to-3rd order, bark roughness, and height), 10-m radius neighborhood properties (number of trees, mean diameter and height, mean distance from study tree, and canopy overlap), and above-canopy storm conditions (magnitude, intensity, mean/max wind speed, and vapor pressure deficit) directly at the site. Stemflow production was 1% of rainfall, ranging from 0.3-59 L per storm from individual trees. Preliminary findings from storms (5-176 mm in magnitude) indicate that all individual tree characteristics, besides bark roughness, have little influence on stemflow generation. Bark roughness altered stemflow generation by affecting trunk water storage (0.1-0.7 mm) and wet trunk evaporation rates (0.005-0.03 mm/h). The strongest influence over stemflow generation from individual trees was the interaction between neighborhood characteristics and meteorological conditions (primarily rainfall amount and, secondarily, rainfall intensity).

Simulated Impacts of Emerald Ash Borer on Throughfall and Stemflow Inputs of Water and Nitrogen in Black Ash Wetlands in Northern Michigan

NASA Astrophysics Data System (ADS)

Pypker, T. G.; Davis, J.; Van Grinsven, M. J.; Bolton, N. W.; Shannon, J.; Kolka, R. K.; Nelson, J.; Wagenbrenner, J. W.

2014-12-01

Emerald ash borer (Agrilus planipennis Fairmaire (EAB)) is an invasive insect that effectively kills ash trees (genus: Fraxinus) greater than 2.5 cm in diameter, resulting in near-complete stand mortality within 3-4 years. Black ash wetlands occupy approximately 270,000 ha in Michigan, and have 40 to 90% of the basal area occupied by black ash (F. nigra Marshall); hence the loss of black ash may result in dramatic changes in the canopy hydrology and nutrient deposition. We assessed the impact of a simulated EAB invasion on throughfall and stemflow quantity and nitrogen (N) content in 9 uninfected black ash wetlands located in the Upper Peninsula of Michigan. Within the 9 stands, 3 stands were left untreated ('Control'), 3 stands had all the black ash trees manually girdled ('Girdled') and 3 had all the black ash trees felled by chainsaw ('Clearcut'). We measured the quantity and inorganic-N content of throughfall using an array of randomly placed collectors (n = 16 per site). Stemflow was monitored at 2 sites (n = 12 trees) on the 3 most common tree species (black ash, yellow birch (Betula alleghaniensis Britt.) and red maple (Acer rubra L.)). Preliminary results indicate that relative to the Control, average monthly throughfall was 25% and 1% greater in the Clearcut and Girdled sites, respectively. While the loss of the ash trees resulted in greater throughfall inputs in the Clearcut sites, water table heights did not significantly change as a result of the treatments. Stemflow from live black ash trees was lower than from the yellow birch and red maple trees. As a result, we predict stemflow will increase over time as species with smoother bark and less upright branching begin replacing the black ash. Hence, the change in tree species may result in a greater concentration of inorganic-N inputs to the base of the trees, thereby altering the distribution of inorganic-N inputs into the wetland. Our preliminary results show no significant change in the total inorganic-N deposition via throughfall. Despite the severity of the disturbance that resulted from the simulated EAB infestation, preliminary results suggest that that these wetlands may show some short-term resiliency to the impacts of ash mortality, resulting in relatively unchanged hydrologic and nutrient deposition regimes.

The Spatial Vision Tree: A Generic Pattern Recognition Engine- Scientific Foundations, Design Principles, and Preliminary Tree Design

NASA Technical Reports Server (NTRS)

Rahman, Zia-ur; Jobson, Daniel J.; Woodell, Glenn A.

2010-01-01

New foundational ideas are used to define a novel approach to generic visual pattern recognition. These ideas proceed from the starting point of the intrinsic equivalence of noise reduction and pattern recognition when noise reduction is taken to its theoretical limit of explicit matched filtering. This led us to think of the logical extension of sparse coding using basis function transforms for both de-noising and pattern recognition to the full pattern specificity of a lexicon of matched filter pattern templates. A key hypothesis is that such a lexicon can be constructed and is, in fact, a generic visual alphabet of spatial vision. Hence it provides a tractable solution for the design of a generic pattern recognition engine. Here we present the key scientific ideas, the basic design principles which emerge from these ideas, and a preliminary design of the Spatial Vision Tree (SVT). The latter is based upon a cryptographic approach whereby we measure a large aggregate estimate of the frequency of occurrence (FOO) for each pattern. These distributions are employed together with Hamming distance criteria to design a two-tier tree. Then using information theory, these same FOO distributions are used to define a precise method for pattern representation. Finally the experimental performance of the preliminary SVT on computer generated test images and complex natural images is assessed.

Forcing attacks of western pine beetles to test resistance of pines

Treesearch

Richard H. Smith

1967-01-01

Success--defined as oviposition or tree-killing--was obtained by attracting western pine beetles to groups of pines with natural attractants and by en-massed forced attacks on individual trees combined with either physical or biological stress. Preliminary results show considerable agreement with laboratory tests of vapor toxicity.

Inbreeding depression in selfs of redwood

Treesearch

W. J. Libby; B. G. McCutchan; C. I. Millar

1981-01-01

Given the polyploid chromosome constitution of Sequoia sempervirens, there was reason to question whether it would exhibit inbreeding depression. Preliminary results from studies of self and related outcross families are reported as a guide to the selection of trees for redwood seed orchards and breeding-orchards. The data indicate that, compared to...

Seasonality on the rainfall partitioning of a fast-growing tree plantation under Mediterranean conditions

NASA Astrophysics Data System (ADS)

molina, antonio; llorens, pilar; biel, carme

2014-05-01

Studies on rainfall interception in fast-growing tree plantations are less numerous than those in natural forests. Trees in these plantations are regularly distributed, and the canopy cover is clumped but changes quickly, resulting on high variability in the volume and composition of water that reach the soil. In addition, irrigation supply is normally required in semiarid areas to get optimal wood production; consequently, knowing rainfall interception and its yearly evolution is crucial to manage the irrigation scheme properly. This work studies the rainfall partitioning seasonality in a cherry tree (Prunus avium) plantation orientated to timber production under Mediterranean conditions. The monitoring design started on March 2012 and consists of a set of 58 throughfall tipping buckets randomly distributed (based on a 1x1 m2 grid) in a plot of 128 m2 with 8 trees. Stemflow is measured in all the trees with 2 tipping buckets and 6 accumulative collectors. Canopy cover is regularly measured throughout the study period, in leaf and leafless periods, by mean of sky-orientated photographs taken 50 cm above the center of each tipping bucket. Others tree biometrics are also measured such as diameter and leaf area index. Meteorological conditions are measured at 2 m above the forest cover. This work presents the first analyses describing the rainfall partitioning and its dependency on canopy cover, distance to tree and meteorological conditions. The modified Gash' model for rainfall interception in dispersed vegetation is also preliminary evaluated.

Macroanatomy of compartmentalization in fire scars of three western conifers

Treesearch

Kevin T. Smith; Elaine Sutherland; Estelle Arbellay; Markus Stoffel; Donald Falk

2013-01-01

Fire scars are visible evidence of compartmentalization and closure processes that contribute to tree survival after fire injury. Preliminary observations of dissected fire scars from trees injured within the last decade showed centripetal development of wound-initiated discoloration (WID) through 2-3 decades of former sapwood in Larix occidentalis and Pseudotsuga...

Initial small mammal responses to alternative pine regeneration methods in Arkansas and Oklahoma: preliminary findings

Treesearch

Ronald E. Thill; Roger W. Perry; Nancy E. Koerth; Philip A. Tappe; David G. Peitz

2004-01-01

Abstract - We studied winter small mammal communities in the Ouachita Mountains of west-central Arkansas and eastern Oklahoma using Sherman live traps in four replications of four regeneration treatments (clearcut/plant, shelterwood, single-tree selection, and group selection), plus four mature, untreated "controls." Data on relative small...

Vegetation Change in Blue Oak Woodlands in California

Treesearch

Barbara A. Holzman; Barbara H. Allen-Diaz

1991-01-01

A preliminary report of a statewide project investigating vegetation change in blue oak (Quercus douglasii) woodlands in California is presented. Vegetation plots taken in the 1930s, as part of a statewide vegetation mapping project, were relocated and surveyed. Species composition, cover and tree stand structure data from the earlier study were...

CHINESE GRAMMARS AND THE COMPUTER AT THE OHIO STATE UNIVERSITY. PRELIMINARY REPORT.

ERIC Educational Resources Information Center

MEYERS, L.F.; YANG, J.

SAMPLE OUTPUT SENTENCES OF VARIOUS COMIT AND SNOBOL PROGRAMS FOR TESTING A CHINESE GENERATIVE GRAMMAR ARE PRESENTED. THE GRAMMAR CHOSEN FOR EXPERIMENTATION IS A PRELIMINARY VERSION OF A TRANSFORMATIONAL GRAMMAR. ALL OF THE COMIT PROGRAMS AND ONE OF THE SNOBOL PROGRAMS USE A LINEARIZED REPRESENTATION OF TREE STRUCTURES, WITH ADDITIONAL NUMERICAL…

Pressure injection of solubilized benomyl for prevention and cure of oak wilt

Treesearch

Thomas W. Jones; Garold F. Gregory; Percy McWain

1973-01-01

A preliminary evaluation of the effectiveness of injecting solubilized benomyl into oaks for prevention or cure of oak wilt disease is presented. Symptom development was greatly reduced or prevented in trees injected with fungicide before inoculation. Symptom development was markedly arrested in diseased trees by fungicide injected before more than 10 percent of the...

Delayed conifer tree mortality following fire in California

Treesearch

Sharon M. Hood; Sheri L. Smith; Daniel R. Cluck

2007-01-01

Fire injury was characterized and survival monitored for 5,246 trees from five wildfires in California that occurred between 1999 and 2002. Logistic regression models for predicting the probability of mortality were developed for incense-cedar, Jeffrey pine, ponderosa pine, red fir and white fir. Two-year post-fire preliminary models were developed for incense-cedar,...

Flammability of litter from southeastern trees: a preliminary assessment

Treesearch

J. Morgan Varner; Jeffrey M. Kane; Erin M. Banwell; Jesse K. Kreye

2015-01-01

The southeastern United States possesses a great diversity of woody species and an equally impressive history of wildland fires. Species are known to vary in their flammability, but little is known about southeastern species. We used published data and our own collections to perform standard litter flammability tests on a diverse suite of 25 native overstory trees from...

Tree growth rates in an Amazonian evergreen forest: seasonal patterns and correlations with leaf phenology

NASA Astrophysics Data System (ADS)

Wu, J.; Silva Campos, K.; Prohaska, N.; Ferreira, M. L.; Nelson, B. W.; Saleska, S. R.; da Silva, R.

2014-12-01

Metabolism and phenology of tropical forests significantly influence global dynamics of climate, carbon and water. However, there is still lack of mechanistic understanding of the controls on tropical forest metabolism, particularly at individual tree level. In this study, we are interested in investigating (1) what is the seasonal pattern of woody growth for tropical trees and (2) what is the mechanistic controls onwoody growth at individual level?To explore the above questions,we use two data sources from an evergreen tropical forest KM67 site (near Santarem, Brazil). They are: (1) image time series from a tower mounted RGB imaging system, with images recordedin10 minutes interval since October 2013.Images near local noon homogeneous diffuse lighting were selectedfor leaf phenologymonitoring; (2) ground based bi-weekly biometry survey (via dendrometry band technique) for 25 trees from random sampling since September 2013. 12 among 25 trees are within the tower mounted camera image view. Our preliminary resultsdemonstrate that 20 trees among 25 trees surveyed significantly increase woody growth (or "green up") in dry season. Our results also find thatamong those 20 trees, 12 trees reaches the maximum woody increment rate in late dry season with a mean DBH (Diameter at Breast Height) around 30 cm,while 8 trees reaching the maximum in the middle of wet season, with a mean DBH around 90 cm. This study,though limited in the sample size, mightprovide another line of evidence that Amazon rainforests "green up" in dry season. As for mechanistic controls on tropical tree woody control, we hypothesize both climate and leaf phenology control individual woody growth. We would like to link both camera based leaf phenology and climate data in the next to explorethe reason as to the pattern found in this study that bigger trees might have different seasonal growth pattern as smaller trees.

Preliminary design document: Ground based testbed for avionics systems

NASA Technical Reports Server (NTRS)

1989-01-01

The design and interface requirements for an avionics Ground Based Test bed (GBT) to support Heavy Lift Cargo Vehicles (HLCV) is presented. It also contains data on the vehicle subsystem configurations that are to be supported during their early, pre-PDR developmental phases. Several emerging technologies are also identified for support. A Preliminary Specification Tree is also presented.

The Colville Study: wood utilization for ecosystem management: preliminary results of study of product potential from small-diameter stands.

Treesearch

S. Willits; R. J. Barbour; J. McNeel; R. D. Fight; G. C. Myers; A. Mason

The Colville Study was developed in 1994 to identify and evaluate a series of management options for achieving ecosystem objectives in dense stands of small-diameter trees while also producing wood products. The Colville National Forest selected the Rocky II Timber Sale as an example of this type of stand that needed management to achieve the following goals: (1)...

Moisture distributions in western hemlock lumber from trees harvested near Sitka, Alaska.

Treesearch

David L. Nicholls; Allen M. Brackley; Travis. Allen

2003-01-01

Western hemlock (Tsuga heterophylla) can be characterized by localized regions of high-moisture-content wood, often referred to as wet pockets, and uneven drying conditions may occur when lumber of higher and lower moisture content is mixed together in a dry kiln. The primary objective of this preliminary study was to characterize the frequency and...

Tree mortality 6 years after burning a thinned Quercus chrysolepis stand

Treesearch

T.E. Paysen; M.G. Narog

1993-01-01

Managers do not currently use prescribed fire in stands of canyon live oak (Quercus chrysolepis Liebm.) because it is highly susceptible to fire injury. A preliminary study investigating the effects of  prescribed burning on this species was initiated on the San Bernardino National Forest in southern California. The purpose was to assess the...

Integrating the effects of forest cover on slope stability in a deterministic landslide susceptibility model (TRIGRS 2.0)

NASA Astrophysics Data System (ADS)

Zieher, T.; Rutzinger, M.; Bremer, M.; Meissl, G.; Geitner, C.

2014-12-01

The potentially stabilizing effects of forest cover in respect of slope stability have been the subject of many studies in the recent past. Hence, the effects of trees are also considered in many deterministic landslide susceptibility models. TRIGRS 2.0 (Transient Rainfall Infiltration and Grid-Based Regional Slope-Stability; USGS) is a dynamic, physically-based model designed to estimate shallow landslide susceptibility in space and time. In the original version the effects of forest cover are not considered. As for further studies in Vorarlberg (Austria) TRIGRS 2.0 is intended to be applied in selected catchments that are densely forested, the effects of trees on slope stability were implemented in the model. Besides hydrological impacts such as interception or transpiration by tree canopies and stems, root cohesion directly influences the stability of slopes especially in case of shallow landslides while the additional weight superimposed by trees is of minor relevance. Detailed data on tree positions and further attributes such as tree height and diameter at breast height were derived throughout the study area (52 km²) from high-resolution airborne laser scanning data. Different scenarios were computed for spruce (Picea abies) in the study area. Root cohesion was estimated area-wide based on published correlations between root reinforcement and distance to tree stems depending on the stem diameter at breast height. In order to account for decreasing root cohesion with depth an exponential distribution was assumed and implemented in the model. Preliminary modelling results show that forest cover can have positive effects on slope stability yet strongly depending on tree age and stand structure. This work has been conducted within C3S-ISLS, which is funded by the Austrian Climate and Energy Fund, 5th ACRP Program.

Influence of lichen species on colonization of Fagus grandifolia by Cryptococcus fagisuga: preliminary observations from certain Nova Scotian forests

Treesearch

David R. Houston

1983-01-01

Some crustose lichens that colonize the stems of beech trees favor infestation by C. fagisuga, while others do not favor infestation. A predominance of species unsuited for infestation appears to be a reason why trees growing on some sites in Nova Scotia are remarkably free of beech bark disease.

Deferred rotation harvests in central Appalachia: 20- and 25-year results

Treesearch

Melissa Thomas-Van Gundy; Thomas M. Schuler

2008-01-01

In deferment harvest, two distinct age classes are created and the residual trees remain after establishment of the second cohort. The 20- or 25-year preliminary results from four deferment areas are described. For each area, volume and growth in the residual trees and new cohort, and structure and composition of the new cohort are presented. We also address whether...

Preliminary evaluation of steel-roller round baler for woody biomass baling

Treesearch

B. J. Stokes; D. L. Sirois; S. L. Woodfin

1987-01-01

A round hay baler with little modification was used to bale small-diameter, crushed trees. The trees had been crushed using a series of compression rollers. Bale cores had to be developed by hand before the baler became self-feeding. Windrowed material was packed off the ground by the baler system after a core had been developed.

Preliminary Use of Uric Acid as a Biomarker for Wading Birds on Everglades Tree Islands, Florida, United States

USGS Publications Warehouse

Bates, Anne L.; Orem, William H.; Newman, Susan; Gawlik, Dale E.; Lerch, Harry E.; Corum, Margo D.; Van Winkle, Monica

2010-01-01

Concentrations of organic biomarkers and concentrations of phosphorus in soil cores can potentially be used as proxies for historic population densities of wading birds on tree islands in the Florida Everglades. This report focuses on establishing a link between the organic biomarker uric acid found in wading bird guano and the high phosphorus concentrations in tree island soils in the Florida Everglades. Uric acid was determined in soil core sections, in surface samples, and in bird guano by using a method of high-performance liquid chromatography-mass spectrometry (HPLC-MS) developed for this purpose. Preliminary results show an overall correlation between uric acid and total phosphorus in three soil cores, with a general trend of decreasing concentrations of both uric acid and phosphorus with depth. However, we have also found no uric acid in a soil core having high concentrations of phosphorus. We believe that this result may be explained by different geochemical circumstances at that site.

Wood anatomical parameters of lowland European oak and Scots pine as proxies for climate reconstructions

NASA Astrophysics Data System (ADS)

Balanzategui, Daniel; Heußner, Karl-Uwe; Wazny, Tomasz; Helle, Gerd; Heinrich, Ingo

2017-04-01

Tree-ring based temperature reconstructions from the temperate lowlands worldwide are largely missing due to diffuse climate signals so far found in tree-ring widths. This motivated us to concentrate our efforts on the wood anatomies of two common European tree species, the European oak (Quercus robur) and Scots pine (Pinus sylvestris). We combined core samples of living trees with archaeological wood from northern Germany and Poland. We measured approx. 46,000 earlywood oak vessels of 34 trees covering the period AD 1500 to 2016 and approx. 7.5 million pine tracheid cells of 41 trees covering the period AD 1300 to 2010. First climate growth analyses indicate that both oak earlywood vessel and pine tracheid parameters contain climate signals which are different and more significant than those found in tree-ring widths. Preliminary results will be presented and discussed at EGU for the first time.

Monitoring the Attack Incidences and Damage Caused by the Almond Bark Beetle, Scolytus amygdali, in Almond Orchards

PubMed Central

Cuthbertson, Andrew G. S.; Braham, Mohamed

2018-01-01

The almond bark beetle, Scolytus amygdali Geurin-Meneville, is responsible for significant loss of fruit production in almond orchards throughout the world. Here, we studied the damage and the incidences of S. amygdali attack on two different scales: (1) at the level of a single tree; and (2) in an entire orchard. Our results revealed no differences in attack level among four orientations (east, west, south and north sides) for the whole tree. However, the bark that was facing west side in the direction of the prevailing wind was found to be the most suitable for females to initiate attack in Stratum S2. Attack distribution remains the same among different strata (strata is vertical divisions of the tree from the ground to the uppermost twigs with ~40 cm intervals). More than 50% of attack was observed in the trunk of the tree and upper strata. However, multiplication rate (number of emerged adults/maternal gallery) varies significantly between strata. In addition, we studied attack intensity (holes produced by beetle per tree) comparing it to tree morphology (flowers, leaves and circumferences) and gum deposit. Our results revealed a positive correlation between attack intensity and gum deposits, and a negative correlation between attack intensity and tree morphology. This revealed that gum on the tree was an indicator for attack intensity. A positive correlation between attack intensity and the circumference of the tree revealed that older trees were more susceptible to S. amygdali attack. These results, while preliminary, aim to help in the monitoring of S. amygdali populations before deciding to apply any control measures. PMID:29301271

Manned space flight nuclear system safety. Volume 3: Reactor system preliminary nuclear safety analysis. Part 2A: Accident model document, appendix

NASA Technical Reports Server (NTRS)

1972-01-01

The detailed abort sequence trees for the reference zirconium hydride (ZrH) reactor power module that have been generated for each phase of the reference Space Base program mission are presented. The trees are graphical representations of causal sequences. Each tree begins with the phase identification and the dichotomy between success and failure. The success branch shows the mission phase objective as being achieved. The failure branch is subdivided, as conditions require, into various primary initiating abort conditions.

Development of volume equations using data obtained by upper stem dendrometry with Monte Carlo integration: preliminary results for eastern redcedar

Treesearch

Thomas B. Lynch; Rodney E. Will; Rider Reynolds

2013-01-01

Preliminary results are given for development of an eastern redcedar (Juniperus virginiana) cubic-volume equation based on measurements of redcedar sample tree stem volume using dendrometry with Monte Carlo integration. Monte Carlo integration techniques can be used to provide unbiased estimates of stem cubic-foot volume based on upper stem diameter...

Preliminary evaluation of environmental variables affecting diameter growth of individual hardwoods in the Southern Appalachian Mountains

Treesearch

W. Henry McNab; F. Thomas Lloyd

2001-01-01

The value of environmental variables as measures of site quality for individual tree growth models was determined for 12 common species of eastern hardwoods in the Southern Appalachian Mountains. Periodic diameter increment was modeled as a function of size, competition and environmental variables for 1,381 trees in even-aged stands of mixed-species. Resulting species...

Stand quality management in a late-rotation, red oak-sweetgum stand in east Mississippi: preliminary results following thinning

Treesearch

James S. Meadows; Daniel A. Skojac

2012-01-01

Stand quality management is a new management strategy in which thinning prescriptions are based solely on tree quality rather than a quantitative level of residual stand density. As long as residual density falls within fairly broad limits, prescriptions are based on tree quality alone. We applied four thinning prescriptions based on stand quality management, along...

Preliminary report on decay in sprout northern hardwoods in relation to timber stand improvement

Treesearch

W.A. Campbell

1938-01-01

Trees of sprout origin are generally considered inferior to trees of seedling origin for the production of sawtimber, owing to form defect and the tendency for decay to enter through the parent stumps. Since most of the valuable hardwood species sprout readily over large areas of the northern hardwood region, clear-cutting of immature stands has resulted in the...

Bark beetles and fungal associates colonizing white spruce in the Great Lakes region.

Treesearch

Kirsten E. Haberkern; Barbara L. Illman; Kenneth F. Raffa

2002-01-01

We examined the major bark beetles and associated fungi colonizing subcortical tissues of white spruce (Picea glauca (Moench) Voss) in the Great Lakes region. Trees were felled at one northwestern Wisconsin site in a preliminary study in 1997 and at 10 sites throughout northern Wisconsin, Minnesota, and Michigan in 1998. Fungal isolations were made from beetles...

Predicting Developmental Status from 12 to 24 Months in Infants at Risk for Autism Spectrum Disorder: A Preliminary Report

ERIC Educational Resources Information Center

Macari, Suzanne L.; Campbell, Daniel; Gengoux, Grace W.; Saulnier, Celine A.; Klin, Ami J.; Chawarska, Katarzyna

2012-01-01

The study examined whether performance profiles on individual items of the Toddler Module of the Autism Diagnostic Observation Schedule at 12 months are associated with developmental status at 24 months in infants at high and low risk for developing Autism Spectrum Disorder (ASD). A nonparametric decision-tree learning algorithm identified sets of…

Growth Reponse of Loblolly Pine to Intermediate Treatment of Fire, Herbicide, and Fertilizer: Preliminary Results

Treesearch

L.M. Marino; B.P. Oswald; K.W. Farrish; H.M. Williams; Daniel R. Unger

2002-01-01

Crown area is an important factor in determining stem development. This study examined the changes in stem diameter per unit area of crown due to treatment with fire, herbicide, fertilizer, and tree-thinning practice. The experimental sites were mid-rotation loblolly pine (Pinus taeda) plantations that were thinned one year before treatment. Site 1...

The Tree-Ring Mercury Record of Gold Mining in the Klondike, Central Yukon Territory

NASA Astrophysics Data System (ADS)

Clackett, S.; Porter, T. J.; Lehnherr, I.

2016-12-01

Mercury (Hg) is an atmospherically mixed pollutant of global concern with the potential to become toxic methyl-Hg (MeHg) is some environments. Accurate projections of future health impacts caused by Hg pollution will partly depend on changes in the atmospheric Hg pool, but knowledge of natural Hg variability is limited by a lack of long term monitoring data, which precludes a robust analysis of how it may evolve in the future. Natural archives such as lake sediments, ice cores and tree-rings have the potential to fill this knowledge gap. Tree-rings may be ideally suited for this purpose since they are annually resolved, they span multiple centuries in some areas, and cover large portions of the Earth's surface. Few studies have evaluated tree-ring Hg, and generally agree tree-rings are a passive archive for local Hg emissions. However, further studies are needed to validate this hypothesis. An ideal site to test this proxy is Bear Creek in the Klondike where the Hg amalgamation method was used during the period 1918-1966 to recover fine gold from placer ore. Gaseous Hg was lost to the local environment during operations, as is confirmed by high soil Hg concentrations at the site today. Local trees would have been exposed to the elevated Hg emissions. We measured tree-ring Hg at Bear Creek to determine if historical Hg trends are preserved. Our preliminary results from a single tree reveal that: (1) peak tree-ring Hg coincides with Bear Creek operations; (2) the lowest tree-ring Hg is observed during the pre-industrial control period (1870-1880); and (3) post-Bear Creek operations (1970-2010) coincides with intermediate tree-ring Hg levels, presumably due to higher Hg global backgrounds in recent decades. Additional trees are being analysed to determine if this result is robust, and will provide important insights on the reliability of this proxy for reconstructing long-term atmospheric Hg at local and potentially broader spatial scales.

Molecular recognition of emerald ash borer infestation using leaf spray mass spectrometry.

PubMed

Falcone, Caitlin E; Cooks, R Graham

2016-06-15

The introduction of the emerald ash borer (Agrilus planipennis) (EAB) from Asia to Michigan, USA, in the 1990s caused the widespread death of ash trees in two Canadian provinces and 24 US states. The three current methods for the detection of emerald ash borer infestation, visual surveys, tree girdling and artificial traps, can be unreliable, and there is clearly a need for a rapid, dependable technique for the detection of emerald ash borer infestation. Leaf spray, an ambient ionization method for mass spectrometry (MS), gives direct chemical information on a leaf sample by applying a high voltage to a naturally or artificially sharply pointed leaf piece causing ions to be generated directly from the leaf tip for MS analysis. Leaflets from 23 healthy and EAB-infested ash trees were analyzed by leaf spray mass spectrometry in an attempt to distinguish healthy and EAB-infested ash trees. In negative ion mode, healthy ash trees showed an increased abundance of ions m/z 455.5, 471.5 and 487.5, and ash trees infested with the EAB displayed an increased abundance of ions m/z 181 and 217. The identities of the chemical discriminators ursolic acid and oleanolic acid in healthy ash trees, and six-carbon sugar alcohols in infested ash trees, were determined by tandem mass spectrometry and confirmed with standards. This preliminary study suggests that leaf spray mass spectrometry of ash tree leaflets provides a potential tool for the early detection of ash tree infestation by the emerald ash borer. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Understanding tree growth in response to moisture variability: Linking 32 years of satellite based soil moisture observations with tree rings

NASA Astrophysics Data System (ADS)

Albrecht, Franziska; Dorigo, Wouter; Gruber, Alexander; Wagner, Wolfgang; Kainz, Wolfgang

2014-05-01

Climate change induced drought variability impacts global forest ecosystems and forest carbon cycle dynamics. Physiological drought stress might even become an issue in regions generally not considered water-limited. The water balance at the soil surface is essential for forest growth. Soil moisture is a key driver linking precipitation and tree development. Tree ring based analyses are a potential approach to study the driving role of hydrological parameters for tree growth. However, at present two major research gaps are apparent: i) soil moisture records are hardly considered and ii) only a few studies are linking tree ring chronologies and satellite observations. Here we used tree ring chronologies obtained from the International Tree ring Data Bank (ITRDB) and remotely sensed soil moisture observations (ECV_SM) to analyze the moisture-tree growth relationship. The ECV_SM dataset, which is being distributed through ESA's Climate Change Initiative for soil moisture covers the period 1979 to 2010 at a spatial resolution of 0.25°. First analyses were performed for Mongolia, a country characterized by a continental arid climate. We extracted 13 tree ring chronologies suitable for our analysis from the ITRDB. Using monthly satellite based soil moisture observations we confirmed previous studies on the seasonality of soil moisture in Mongolia. Further, we investigated the relationship between tree growth (as reflected by tree ring width index) and remotely sensed soil moisture records by applying correlation analysis. In terms of correlation coefficient a strong response of tree growth to soil moisture conditions of current April to August was observed, confirming a strong linkage between tree growth and soil water storage. The highest correlation was found for current April (R=0.44), indicating that sufficient water supply is vital for trees at the beginning of the growing season. To verify these results, we related the chronologies to reanalysis precipitation and temperature datasets. Precipitation was important during both the current and previous growth season. Temperature showed the strongest correlation for previous (R=0.12) and current October (R=0.21). Hence, our results demonstrated that water supply is most likely limiting tree growth during the growing season, while temperature is determining its length. We are confident that long-term satellite based soil moisture observations can bridge spatial and temporal limitations that are inherent to in situ measurements, which are traditionally used for tree ring research. Our preliminary results are a foundation for further studies linking remotely sensed datasets and tree ring chronologies, an approach that has not been widely investigated among the scientific community.

DNA Profiles of MTG (Moderat Tahan Gano) Oil Palm Variety Based on SSR Marker

NASA Astrophysics Data System (ADS)

Putri, L. A. P.; Setiado, H.; Hardianti, R.

2017-03-01

The oil palm, an economically important tree in Indonesia, has been one of the world’s major sources of edible oil and a significant precursor of biodiesel fuel. The objectives of this study were to know DNA profile of commercial MTG (Moderat Tahan Gano) oil palm variety collections. A total of 10 trees MTG oil palm variety were used for analysis. In this experiment, the DNA profile diversity was assessed using mEgCIR0174 and SSR-1 loci of oil palm’s specific SSR markers. The results of the experiment indicated out of 3 alleles of pcr product of mEgCIR0174 (198, 203 and 208 bp) and SSR-1 (201, 217 and 232 bp). These preliminary results demonstrated SSR marker can be used to evaluate genetic relatedness among trees of MTG (Moderat Tahan Gano) oil palm variety derived from different crossing or difference to desease resistance trait or misslabeled.

Preliminary assessment of post-Haiyan mangrove damage and short-term recovery in Eastern Samar, central Philippines.

PubMed

Primavera, J H; Dela Cruz, M; Montilijao, C; Consunji, H; Dela Paz, M; Rollon, R N; Maranan, K; Samson, M S; Blanco, A

2016-08-30

Strong winds and storm surges from Typhoon Haiyan caused damage of US$12-15billion and >10,000 human casualties in central Philippines in November 2013. To validate a proposed government US$22million mangrove replanting program, mangrove damage and short-term recovery were surveyed in seven natural and planted mangrove sites in Eastern Samar province at 2.5month and 4.5month post-Haiyan. The preliminary assessment showed that natural mangroves (except for those directly hit by the storm) were recovering by means of tree sprouts and surviving seedlings and saplings compared to the devastated plantation. Likewise, tree mortality was higher in the plantation and natural forests hit by the storm surge, compared to more undamaged and partially damaged trees in natural mangroves. Hence the main recommendations to government are (1) to protect recovering mangroves by not releasing rehabilitation funds (that will inadvertently pay for clearing of live trees and for removal of seedlings), (2) to only plant in totally damaged sites (e.g., plantations), and (3) to only plant naturally dominant species, e.g., Sonneratia alba and Avicennia marina (instead of the popular Rhizophora apiculata, R. mucronata and R. stylosa). Copyright © 2016 Elsevier Ltd. All rights reserved.

Tree- Rings Link Climate and Carbon Storage in a Northern Mixed Hardwood Forest

NASA Astrophysics Data System (ADS)

Chiriboga, A.

2007-12-01

The terrestrial biosphere is a variable sink for atmospheric carbon dioxide. It is important to understand how carbon storage in trees is affected by natural climate variability to better characterize the sink. Quantifying the sensitivity of forest carbon storage to climate will improve carbon budgets and have implications for forest management practices. Here we explore how climate variability affects the ability of a northern mixed hardwood forest in Michigan to sequester atmospheric carbon dioxide in woody tissues. This site is ideal for studies of carbon sequestration; The University of Michigan Biological Station is an Ameriflux site, and has detailed meteorological and biometric records, as well as CO2 flux data. We have produced an 82- year aspen (Populus grandidentata) tree-ring chronology for this site, and measured ring widths at several heights up the bole. These measurements were used to estimate annual wood volume, which represents carbon allocated to aboveground carbon stores. Standard dendroclimatological techniques are used to identify environmental factors (e.g. temperature or precipitation) that drive tree-ring increment variability in the past century, and therefore annual carbon storage in this forest. Preliminary results show that marker years within the tree- ring chronology correspond with years that have cold spring temperatures. This suggests that trees at this site are temperature sensitive.

Mapping urban forest tree species using IKONOS imagery: preliminary results.

PubMed

Pu, Ruiliang

2011-01-01

A stepwise masking system with high-resolution IKONOS imagery was developed to identify and map urban forest tree species/groups in the City of Tampa, Florida, USA. The eight species/groups consist of sand live oak (Quercus geminata), laurel oak (Quercus laurifolia), live oak (Quercus virginiana), magnolia (Magnolia grandiflora), pine (species group), palm (species group), camphor (Cinnamomum camphora), and red maple (Acer rubrum). The system was implemented with soil-adjusted vegetation index (SAVI) threshold, textural information after running a low-pass filter, and brightness threshold of NIR band to separate tree canopies from non-vegetated areas from other vegetation types (e.g., grass/lawn) and to separate the tree canopies into sunlit and shadow areas. A maximum likelihood classifier was used to identify and map forest type and species. After IKONOS imagery was preprocessed, a total of nine spectral features were generated, including four spectral bands, three hue-intensity-saturation indices, one SAVI, and one texture image. The identified and mapped results were examined with independent ground survey data. The experimental results indicate that when classifying all the eight tree species/ groups with the high-resolution IKONOS image data, the identifying accuracy was very low and could not satisfy a practical application level, and when merging the eight species/groups into four major species/groups, the average accuracy is still low (average accuracy = 73%, overall accuracy = 86%, and κ = 0.76 with sunlit test samples). Such a low accuracy of identifying and mapping the urban tree species/groups is attributable to low spatial resolution IKONOS image data relative to tree crown size, to complex and variable background spectrum impact on crown spectra, and to shadow/shaded impact. The preliminary results imply that to improve the tree species identification accuracy and achieve a practical application level in urban area, multi-temporal (multi-seasonal) or hyperspectral data image data should be considered for use in the future.

Preliminary soil-site studies in the western white pine type

Treesearch

Otis L. Copeland

1956-01-01

A guide for estimating site quality on bare, cut-over, or burned-over lands in the western white pine type is needed for planning the management of these lands. On many areas trees may be entirely lacking or an insufficient number in the proper crown classes remain on which reliable site index determinations can be based. Therefore, reliance must be placed on some...

The Effect of Soil Manganese on Japanese Larch (Larix Leptolepis Sieb. and Zucc.) Seedlings in the Greenhouse

Treesearch

Callie Jo Schweitzer; William E. Sharpe; Pamela J. Edwards

1999-01-01

Preliminary analysis of 9 year old Japanese larch trees and soil subjected to appliitions of triple ambient annual nitrogen (N) and sulfur (S) deposftfon revealed elevated available soil and foliar manganese (Mn) levels and decreased growth compared to controls. A greenhouse study was conducted in which Japanese larch seedlings were grown in geld collected soil...

Factors impacting stemflow generation in a European beech forest: Individual tree versus neighborhood properties

NASA Astrophysics Data System (ADS)

Metzger, Johanna Clara; Germer, Sonja; Hildebrandt, Anke

2017-04-01

The redistribution of precipitation by canopies changes the water flow dynamics to the forest floor. The spatial pattern of throughfall has been researched in a number of studies in different ecosystems. Yet, also stemflow substantially influences water input patterns, constituting a mean of 12% of gross precipitation for European beech as one of the most abundant tree species in Central Europe. While the initiation of stemflow depends mostly on precipitation event properties, stemflow amounts are strongly shaped by canopy structure. Stemflow research has mainly addressed the impact of single tree morphological variables. In previous studies, the impact of forest structure on area-based stemflow was studied comparing plots with different properties using few exemplary stemflow measurements. In non-homogeneous stands, this approach might not be accurate, as the variation of stand properties like tree density could change tree individual stemflow fluxes. To investigate this, a total measurement of all trees per plot is required. We hypothesize, that in addition to individual tree metrics, tree neighborhood relations have a significant impact on stemflow generation in a heterogeneous beech forest. Our study site is located in the pristine forest of the National Park Hainich, central Germany. It is heterogeneous in respect to tree density, species composition and tree age. We measured stemflow in an areal approach, for all trees on 11 subplots (each 10 m x 10 m) spaced evenly throughout a 1 ha plot. This involved overall 65 trees, which is 11% of the plot's trees. 27 precipitation events were recorded in spring and early summer of 2015 and 2016. Stand properties were surveyed, including diameter at breast height, height, position and species of a tree. From this data, we calculated neighborhood properties for each tree, as number, basal area, and relative height of neighboring trees within a radius of the plot's mean tree distance. Using linear mixed effects models, we identified the different factors, individual and neighborhood, which significantly explain stemflow amount per tree. Preliminary results show, that the main impact on stemflow in our heterogeneous beech forest is due to individual tree diameter at breast height, while neighborhood factors have a smaller influence. This work defines the most important factors for stemflow fluxes, using easy-to-acquire tree and stand information, which allows the robust extrapolation of stemflow measurements and the generation of a spatially discrete pattern of stemflow input to the soil. Because of the high local and temporal concentration of precipitation, stemflow fluxes could be a key factor in forest soil water dynamics. On the long run, the results shall enable us to directly link soil water content measurements with estimated stemflow volumes for individual trees to trace stemflow fluxes into and through the soil.

Pulmonary airways tree segmentation from CT examinations using adaptive volume of interest

NASA Astrophysics Data System (ADS)

Park, Sang Cheol; Kim, Won Pil; Zheng, Bin; Leader, Joseph K.; Pu, Jiantao; Tan, Jun; Gur, David

2009-02-01

Airways tree segmentation is an important step in quantitatively assessing the severity of and changes in several lung diseases such as chronic obstructive pulmonary disease (COPD), asthma, and cystic fibrosis. It can also be used in guiding bronchoscopy. The purpose of this study is to develop an automated scheme for segmenting the airways tree structure depicted on chest CT examinations. After lung volume segmentation, the scheme defines the first cylinder-like volume of interest (VOI) using a series of images depicting the trachea. The scheme then iteratively defines and adds subsequent VOIs using a region growing algorithm combined with adaptively determined thresholds in order to trace possible sections of airways located inside the combined VOI in question. The airway tree segmentation process is automatically terminated after the scheme assesses all defined VOIs in the iteratively assembled VOI list. In this preliminary study, ten CT examinations with 1.25mm section thickness and two different CT image reconstruction kernels ("bone" and "standard") were selected and used to test the proposed airways tree segmentation scheme. The experiment results showed that (1) adopting this approach affectively prevented the scheme from infiltrating into the parenchyma, (2) the proposed method reasonably accurately segmented the airways trees with lower false positive identification rate as compared with other previously reported schemes that are based on 2-D image segmentation and data analyses, and (3) the proposed adaptive, iterative threshold selection method for the region growing step in each identified VOI enables the scheme to segment the airways trees reliably to the 4th generation in this limited dataset with successful segmentation up to the 5th generation in a fraction of the airways tree branches.

The effect of advance growth on ponderosa pine seedling mortality at Challenge Experimental Forest

Treesearch

Dale O. Hall

1963-01-01

In seed-tree cuttings at Challenge Experimental Forest, preliminary data show that as advance-growth stocking (20 inches in d.b.h. or less ) increased from 11 t o 49 square feet, seedling mortality increased from 4 to 32 percent (based on stocked mil-acre plots). A comparable increase in the stocking of seed trees over 20 inches in d .b.h. did not increase mortality....

Buffalo Harbor Study. Preliminary Feasibility Report. Volume I. Main Report.

DTIC Science & Technology

1983-04-01

to usually narrow strips of riparian vegetation, which is composed of various trees and shrubs of the Salix genus (willow), sumac, aspen, boxelder...reptiles were found. Species included, leopard frogs, snapping turtles, painted turtle, and garter snakes (SUNY Brockport: 1982). (7) Endangered Species...vessel traffic on the Buffalo River causes interrupted truck service. Firms have also cited snow removal as a problem. The harbor area road service

Monoterpene emissions from a Ponderosa Pine forest. Does age matter?

NASA Astrophysics Data System (ADS)

Madronich, M. B.; Guenther, A. B.; Wessman, C. A.

2011-12-01

Determining the emissions rate of biogenic volatile organic carbon (BVOC) from plants is a challenge. Biological variability makes it difficult to assess accurately those emissions rates. It is known that photosynthetic active radiation (PAR), temperature, nutrients as well as the biology of the plant affect emissions. However, less is known about the variability of the emissions with respect to the life cycle of the plants. This study is focusing on the difference of monoterpene emission rates from mature Ponderosa Pine trees and saplings in the field. Preliminary calculations show that there is a significant difference between total monoterpene emissions in mature trees (0.24±0.04 μgC/gdwh) and saplings (0.37±0.02 μgC/gdwh).

Landscape Heterogeneity Modulates Forest Sensitivity to Climate

NASA Astrophysics Data System (ADS)

Hoylman, Z. H.; Jencso, K. G.; Hu, J.; Running, S. W.

2014-12-01

Elevation dependent snowmelt magnitude and timing strongly influences net ecosystem productivity in forested mountain watersheds. However, previous work has provided little insight into how internal watershed topography and organization may modulate plant available water and forest growth across elevation gradients. We collected 800 tree cores from five coniferous tree species across a range of elevations, topographic positions and aspects in the Lubrecht Experimental Forest, Montana, USA. We compared the annual basal area increment growth rate to precipitation and temperature from a 60-year SNOTEL data record, groundwater and soil moisture data in sideslope and hollow positions, and topographic indices derived from a LiDAR digital elevation model. At the watershed scale, we evaluated the relationships between topographic indices, LiDAR derived estimates of basal area and seasonal patterns of the Landsat derived Enhanced Vegetation Index. Preliminary results indicate strong relationships between the rates of annual basal growth and the topographic wetness index (TWI) , with differing slopes dependent on tree species (P. menziesii R2 = 0.66-0.71, P. ponderosa R2 = 0.87, L. occidentalis R2 = 0.71) and elevation. Generally, trees located in wetter landscape positions (higher TWI) exhibited greater annual growth per unit of precipitation relative to trees located in drier landscape positions (lower TWI). Watershed scale analysis of LiDAR derived biomass and seasonal greenness indicates differential growth response due to elevation gradients, irradiance and local convergence and divergence. These preliminary observations suggest that topographically driven water redistribution patterns may modulate the effects of large scale gradients in precipitation and temperature, thereby creating hotspots for conifer productivity in semiarid watersheds.

Estimation on rubber tree disturbance caused by typhoon Damery (200518) with Landsat and MODIS data in Hainan Island of China

NASA Astrophysics Data System (ADS)

Tan, Chenyan; Fang, Weihua; Li, Jian

2016-04-01

In 2005, Typhoon Damery (200518) caused severe damage to the rubber trees in Hainan Island with its destructive winds and rainfall. Selection of proper vegetation indices using multi-source remote sensing data is critical to the assessment of forest disturbance and damage loss for this event. In this study, we will compare the performance of seven vegetation indices derived from MODIS and Landsat TM imageries prior to and after typhoon Damery, in order to select an optimal index for identifying rubber tree disturbance. The indices to be compared are normalized difference vegetation index (NDVI), Normalized Difference Water Index (NDWI), Normalized Difference Infrared Index (NDII), Enhanced vegetation index (EVI), Leaf area index (LAI), forest z-score (IFZ), and Disturbance Index (DI). The ground truth data of rubber tree damage collected through field investigation was used to verify and compare the results. Our preliminary result for the area with ground-truth data shows that DI has the most significant performance for disturbance detection for this typhoon event. This index DI is then applied to all the areas in Hainan Island hit by Darmey to evaluate the overall forest damage severity. At last, rubber tree damage severity is analyzed with other typhoon hazard factors such as wind, topography, soil and precipitation.

Wind tunnel studies on spray deposition on leaves of tree species used for windbreaks and exposure of honey bees.

PubMed

Ucar, Tamer; Hall, Franklin R; Tew, James E; Hacker, James K

2003-03-01

A wind tunnel study was conducted to determine pesticide deposition on commonly used windbreak tree species used as spray drift barriers and associated exposure of honey bees. Although it has been known that windbreaks are effective in reducing chemical drift from agricultural applications, there is still an enormous information and data gap on details of the dependence of the mechanism on the biological materials of the barriers and on standardization of relevant assessment methods. Beneficial arthropods like honey bees are adversely affected by airborne drift of pesticides. A study was initiated by first establishing a wind tunnel to create a controlled environment for capture efficiency work. Suitable spray parameters were determined after a preliminary study to construct and develop a wind tunnel protocol. A tracer dye solution was sprayed onto the windbreak samples and honey bees located in the wind tunnel at various simulated wind speeds. Analysis of data from this work has shown that needle-like foliage of windbreak trees captures two to four times more spray than broad-leaves. In addition, it was determined that, at lower wind speeds, flying bees tend to capture slightly more spray than bees at rest.

Multicentury Reconstruction of Precipitations (1300-2014) in Eastern Canada from Tree-Ring Width and Carbon and Oxygen Isotopes

NASA Astrophysics Data System (ADS)

Giguère, Claudie; Boucher, Étienne; Bergeron, Yves

2016-04-01

Tree ring series enabling long hydroclimatic reconstructions are scarce in Northeastern America, mostly because most boreal species are rather thermo-dependant. Here we propose a new multi-proxy analysis (tree-ring, δ13C and δ18O) from one of the oldest Thuja occidentalis population in NE America (lake Duparquet, Quebec). These rare precipitation-sensitive, long-living trees (> 800 years) grow on xeric rocky shores and their potential for paleo-hydroclimatic reconstructions (based on ring widths solely) was previously assessed. The objectives of this study are twofold i) to strengthen the hydroclimatic signal of this long tree-ring chronology by adding analysis of stable isotope ratios (δ13C and δ18O) and ii) to reconstruct summer precipitation back to 1300 AD, which will represent, by far, the longest high-resolution hydroclimatic reconstruction in this region. A tree-ring chronology was constructed from 61 trees sampled in standing position. Eleven trees were also sampled to produce pooled carbon and oxygen isotope chronologies (annually resolved) with a replication of five to six trees per year. Signal analysis (correlation between climatic data and proxy values) confirms that growth is positively influenced by spring precipitations (May-June), while δ13C is negatively correlated to summer precipitation (June to August) and positively to June temperature. Adding δ18O analysis will strengthen the signal even more, since wood cellulose should be enriched in δ18O when high evapotranspiration conditions prevail. Based on a multi-proxy approach, a summer precipitation reconstruction was developed and compared to other temperature reconstructions from this region as well as to southernmost hydroclimatic reconstructions (e.g. Cook et al). A preliminary analysis of external and internal forcing is proposed in conclusion.

A feasibility study on the measurement of tree trunks in forests using multi-scale vertical images

NASA Astrophysics Data System (ADS)

Berveglieri, A.; Oliveira, R. O.; Tommaselli, A. M. G.

2014-06-01

The determination of the Diameter at Breast Height (DBH) is an important variable that contributes to several studies on forest, e.g., environmental monitoring, tree growth, volume of wood, and biomass estimation. This paper presents a preliminary technique for the measurement of tree trunks using terrestrial images collected with a panoramic camera in nadir view. A multi-scale model is generated with these images. Homologue points on the trunk surface are measured over the images and their ground coordinates are determined by intersection of rays. The resulting XY coordinates of each trunk, defining an arc shape, can be used as observations in a circle fitting by least squares. Then, the DBH of each trunk is calculated using an estimated radius. Experiments were performed in two urban forest areas to assess the approach. In comparison with direct measurements on the trunks taken with a measuring tape, the discrepancies presented a Root Mean Square Error (RMSE) of 1.8 cm with a standard deviation of 0.7 cm. These results demonstrate compatibility with manual measurements and confirm the feasibility of the proposed technique.

Transforming Pinus pinaster forest to recreation site: preliminary effects on LAI, some forest floor, and soil properties.

PubMed

Öztürk, Melih; Bolat, İlyas

2014-04-01

This study investigates the effects of forest transformation into recreation site. A fragment of a Pinus pinaster plantation forest was transferred to a recreation site in the city of Bartın located close to the Black Sea coast of northwestern Turkey. During the transformation, some of the trees were selectively removed from the forest to generate more open spaces for the recreationists. As a result, Leaf Area Index (LAI) decreased by 0.20 (about 11%). Additionally, roads and pathways were introduced into the site together with some recreational equipment sealing parts of the soil surface. Consequently, forest environment was altered with a semi-natural landscape within the recreation site. The purpose of this study is to assess the effects of forest transformation into recreation site particularly in terms of the LAI parameter, forest floor, and soil properties. Preliminary monitoring results indicate that forest floor biomass is reduced by 26% in the recreation site compared to the control site. Soil temperature is increased by 15% in the recreation site where selective removal of trees expanded the gaps allowing more light transmission. On the other hand, the soil bulk density which is an indicator of soil compaction is unexpectedly slightly lower in the recreation site. Organic carbon (C(org)) and total nitrogen (N(total)) together with the other physical and chemical parameter values indicate that forest floor and soil have not been exposed to much disturbance. However, subsequent removal of trees that would threaten the vegetation, forest floor, and soil should not be allowed. The activities of the recreationists are to be concentrated on the paved spaces rather than soil surfaces. Furthermore, long-term monitoring and management is necessary for both the observation and conservation of the site.

Analysis of local scale tree-atmosphere interaction on pollutant concentration in idealized street canyons and application to a real urban junction

NASA Astrophysics Data System (ADS)

Buccolieri, Riccardo; Salim, Salim Mohamed; Leo, Laura Sandra; Di Sabatino, Silvana; Chan, Andrew; Ielpo, Pierina; de Gennaro, Gianluigi; Gromke, Christof

2011-03-01

This paper first discusses the aerodynamic effects of trees on local scale flow and pollutant concentration in idealized street canyon configurations by means of laboratory experiments and Computational Fluid Dynamics (CFD). These analyses are then used as a reference modelling study for the extension a the neighbourhood scale by investigating a real urban junction of a medium size city in southern Italy. A comparison with previous investigations shows that street-level concentrations crucially depend on the wind direction and street canyon aspect ratio W/H (with W and H the width and the height of buildings, respectively) rather than on tree crown porosity and stand density. It is usually assumed in the literature that larger concentrations are associated with perpendicular approaching wind. In this study, we demonstrate that while for tree-free street canyons under inclined wind directions the larger the aspect ratio the lower the street-level concentration, in presence of trees the expected reduction of street-level concentration with aspect ratio is less pronounced. Observations made for the idealized street canyons are re-interpreted in real case scenario focusing on the neighbourhood scale in proximity of a complex urban junction formed by street canyons of similar aspect ratios as those investigated in the laboratory. The aim is to show the combined influence of building morphology and vegetation on flow and dispersion and to assess the effect of vegetation on local concentration levels. To this aim, CFD simulations for two typical winter/spring days show that trees contribute to alter the local flow and act to trap pollutants. This preliminary study indicates that failing to account for the presence of vegetation, as typically practiced in most operational dispersion models, would result in non-negligible errors in the predictions.

[Preliminary plant inventory of the palm-swamps in the Caribbean of Costa Rica and Nicaragua].

PubMed

Rueda, Ricardo; Jarquín, Orlando; Munguía, Blanca; Reyes, Aquiles; Coronado, Indiana

2013-09-01

In the Caribbean slope of Isthmian Central America, plant associations dominated by the palms Raphia taedigera and Manicaria saccifera develop in poorly drained or waterlogged soils. These associations are known locally as yolillales or palm-swamps, although there are differences in the forest structure and plant diversity associated with both palm species. In this paper, we report the results of a preliminary inventory of tree species found in eight palm-swamps at five locations in southeastern Nicaragua and northeastern Costa Rica. Our data reveal low tree diversity in these swamps with only 60 species accounted in them. This figure is equivalent to close to 8% of the plant species known for this region. In general, R. taedigera dominates flooded areas with extensive hydroperiods and lower floristic diversity, while M. saccifera is often found in flooded forests with more structure and diversity.

Tracking Trends in Fractional Forest Cover Change using Long Term Data from AVHRR and MODIS

NASA Astrophysics Data System (ADS)

Kim, D. H.; DiMiceli, C.; Sohlberg, R. A.; Hansen, M.; Carroll, M.; Kelly, M.; Townshend, J. R.

2014-12-01

Tree cover affects terrestrial energy and water exchanges, photosynthesis and transpiration, net primary production, and carbon and nutrient fluxes. Accurate and long-term continuous observation of tree cover change is critical for the study of the gradual ecosystem change. Tree cover is most commonly inferred from categorical maps which may inadequately represent within-class heterogeneity for many analyses. Alternatively, Vegetation Continuous Fields data measures fractions or proportions of pixel area. Recent development in remote sensing data processing and cross sensor calibration techniques enabled the continuous, long-term observations such as Land Long-Term Data Records. Such data products and their surface reflectance data have enhanced the possibilities for long term Vegetation Continuous Fields data, thus enabling the estimation of long term trend of fractional forest cover change. In this presentation, we will summarize the progress in algorithm development including automation of training selection for deciduous and evergreen forest, the preliminary results, and its future applications to relate trends in fractional forest cover change and environmental change.

Spatial and Temporal Patterns In Ecohydrological Separation

NASA Astrophysics Data System (ADS)

Jarvis, S. K.; Barnard, H. R.; Singha, K.; Harmon, R. E.; Szutu, D.

2017-12-01

The model of ecohydrological separation suggests that trees source water from a different subsurface pool than what is contributing to stream flow during dry periods, however diel fluctuations in stream flow and transpiration are tightly coupled. To better understand the mechanism of this coupling, this study examines spatiotemporal patterns in water isotopic relationships between tree, soil, and stream water. Preliminary analysis of data collected in 2015 show a trend in δ18O enrichment in xylem water, suggesting an increased reliance on enriched soil water not flowing to the stream as the growing season progresses, while xylem samples from 2016, a particularly wet year, do not have this trend. Variations in these temporal trends are explored with regard to distance from stream, aspect of hillslope, position in the watershed, size of the tree, and soil depth. Additionally, a near-stream site is examined at high resolution using water isotope data, sap flow, and electrical resistivity surveying to examine soil moisture and water use patterns across the riparian-hillslope transition.

First report of Armillaria sinapina, a cause of armillaria root disease, associated with a variety of forest tree hosts on sites with diverse climates in Alaska

Treesearch

N. B. Klopfenstein; J. E. Lundquist; J. W. Hanna; M.-S. Kim; G. I. McDonald

2009-01-01

In August of 2007, a preliminary survey was conducted in Alaska to evaluate potential impacts of climate change on forest trees. Armillaria sinapina, a root-disease pathogen, was isolated from conifer and hardwood hosts on climatically diverse sites spanning 675 km from the Kenai Peninsula to the Arctic Circle. Seven isolates (NKAK1, NKAK2, NKAK5, NKAK6, NKAK9F, NKAK13...

Preliminary Results of Double-Sample Forest Inventory of Pine and Mixed Stands with High- and Low-Density LiDAR

Treesearch

Robert C. Parker; Patrick A. Glass

2004-01-01

LiDAR data (0.5 and 1 m postings) were used in a double-sample forest inventory on the Lee Experimental Forest, Louisiana. Phase 2 plots were established with DGPS. Tree d.b.h. (> 4.5 inches) and two sample heights were measured on every 10 th plot of the Phase 1 sample. Volume was computed for natural and planted pine and mixed hardwood species. LiDAR trees were...

Ground truth assessments of forests affected by oak decline and red oak borer in the interior highlands of Arkansas, Oklahoma, and Missouri: preliminary results from overstory analysis

Treesearch

James M. Guldin; Edward A. Poole; Eric Heitzman; John M. Kabrick; Rose-Marie Muzika

2006-01-01

Forests of the Interior Highlands of Arkansas, Oklahoma, and Missouri are being affected by oak decline and an unprecedented outbreak of a native beetle called the red oak borer. On average, Interior Highlands stands contained 236 trees per acre, of which 32 trees per acre (13.4 percent) were dead or dying. Stands averaged 97 square feet per acre of basal area, of...

Aerodynamic effects of trees on pollutant concentration in street canyons.

PubMed

Buccolieri, Riccardo; Gromke, Christof; Di Sabatino, Silvana; Ruck, Bodo

2009-09-15

This paper deals with aerodynamic effects of avenue-like tree planting on flow and traffic-originated pollutant dispersion in urban street canyons by means of wind tunnel experiments and numerical simulations. Several parameters affecting pedestrian level concentration are investigated, namely plant morphology, positioning and arrangement. We extend our previous work in this novel aspect of research to new configurations which comprise tree planting of different crown porosity and stand density, planted in two rows within a canyon of street width to building height ratio W/H=2 with perpendicular approaching wind. Sulfur hexafluoride was used as tracer gas to model the traffic emissions. Complementary to wind tunnel experiments, 3D numerical simulations were performed with the Computational Fluid Dynamics (CFD) code FLUENT using a Reynolds Stress turbulence closure for flow and the advection-diffusion method for concentration calculations. In the presence of trees, both measurements and simulations showed considerable larger pollutant concentrations near the leeward wall and slightly lower concentrations near the windward wall in comparison with the tree-less case. Tree stand density and crown porosity were found to be of minor importance in affecting pollutant concentration. On the other hand, the analysis indicated that W/H is a more crucial parameter. The larger the value of W/H the smaller is the effect of trees on pedestrian level concentration regardless of tree morphology and arrangement. A preliminary analysis of approaching flow velocities showed that at low wind speed the effect of trees on concentrations is worst than at higher speed. The investigations carried out in this work allowed us to set up an appropriate CFD modelling methodology for the study of the aerodynamic effects of tree planting in street canyons. The results obtained can be used by city planners for the design of tree planting in the urban environment with regard to air quality issues.

The Urban Ecology Institute's field studies program: utilizing urban areas for experiential learning and ecological research

NASA Astrophysics Data System (ADS)

Starry, O.

2005-05-01

The Urban Ecology Institute (UEI) promotes the stewardship of healthy urban ecosystems by improving science and civic education for middle and high school youth and by working with urban communities to protect and transform natural resources. Established in 1999, UEI's field studies program engages over 1000 youth in the greater Boston area. A substantial component of this program involves water quality monitoring. We have recently adapted protocols from published leaf breakdown studies for incorporation into the UEI water quality curriculum. A 2004 pilot study of these leaf breakdown activities, conducted at four sites, compared rates of red maple breakdown to those of Norway maple, a potentially invasive urban street tree. Preliminary data from this successful pilot study suggest that leaf litter inputs from the two different tree species have varying effects on stream ecosystem function. We present this study as an example of how urban areas can be utilized for both ecological research and inclusive experiential learning through which science and mathematic knowledge can be effectively communicated.

Biogeochemical hotspots following a simulated tree mortality event of southern pine beetle

NASA Astrophysics Data System (ADS)

Siegert, C. M.; Renninger, H. J.; Karunarathna, S.; Hornslein, N.; Riggins, J. J.; Clay, N. A.; Tang, J. D.; Chaney, B.; Drotar, N.

2017-12-01

Disturbances in forest ecosystems can alter functions like productivity, respiration, and nutrient cycling through the creation of biogeochemical hotspots. These events occur sporadically across the landscape, leading to uncertainty in terrestrial biosphere carbon models, which have yet to capture the full complexity of biotic and abiotic factors driving ecological processes in the terrestrial environment. Given the widespread impact of southern pine beetle on forest ecosystems throughout the southeastern United States, it is critical to management and planning activities to understand the role of these disturbances. As such, we hypothesize that bark beetle killed trees create biogeochemical hotspots in the soils surrounding their trunk as they undergo mortality due to (1) increased soil moisture from reductions in plant water uptake and increased stemflow production, (2) enhanced canopy-derived inputs of carbon and nitrogen, and (3) increased microbial activity and root mortality. In 2015, a field experiment to mimic a southern pine beetle attack was established by girdling loblolly pine trees. Subsequent measurements of throughfall and stemflow for water quantity and quality, transpiration, stem respiration, soil respiration, and soil chemistry were used to quantify the extent of spatial and temporal impacts of tree mortality on carbon budgets. Compared to control trees, girdled trees exhibited reduced water uptake within the first 6 months of the study and succumbed to mortality within 18 months. Over two years, the girdled trees generated 33% more stemflow than control trees (7836 vs. 5882 L m-2). Preliminary analysis of carbon and nitrogen concentrations and dissolved organic matter quality are still pending. In the surrounding soils, C:N ratios were greater under control trees (12.8) than under girdled trees (12.1), which was driven by an increase in carbon around control trees (+0.13 mg C mg-1 soil) and not a decrease around girdled trees (-0.01 mg C mg-1 soil), with no observed differences in N concentrations. Although data from the remaining of the 2017 growing season are still pending, we have thus far demonstrated how tree mortality from southern pine beetle changes single tree hydrologic and biogeochemical cycles.

Use hyperspectral remote sensing technique to monitoring pine wood nomatode disease preliminary

NASA Astrophysics Data System (ADS)

Qin, Lin; Wang, Xianghong; Jiang, Jing; Yang, Xianchang; Ke, Daiyan; Li, Hongqun; Wang, Dingyi

2016-10-01

The pine wilt disease is a devastating disease of pine trees. In China, the first discoveries of the pine wilt disease on 1982 at Dr. Sun Yat-sen's Mausoleum in Nanjing. It occurred an area of 77000 hm2 in 2005, More than 1540000 pine trees deaths in the year. Many districts of Chongqing in Three Gorges Reservoir have different degrees of pine wilt disease occurrence. It is a serious threat to the ecological environment of the reservoir area. Use unmanned airship to carry high spectrum remote sensing monitoring technology to develop the study on pine wood nematode disease early diagnosis and early warning and forecasting in this study. The hyper spectral data and the digital orthophoto map data of Fuling District Yongsheng Forestry had been achieved In September 2015. Using digital image processing technology to deal with the digital orthophoto map, the number of disease tree and its distribution is automatic identified. Hyper spectral remote sensing data is processed by the spectrum comparison algorithm, and the number and distribution of disease pine trees are also obtained. Two results are compared, the distribution area of disease pine trees are basically the same, indicating that using low air remote sensing technology to monitor the pine wood nematode distribution is successful. From the results we can see that the hyper spectral data analysis results more accurate and less affected by environmental factors than digital orthophoto map analysis results, and more environment variable can be extracted, so the hyper spectral data study is future development direction.

Water uptake of trees in a montane forest catchment and the geomorphological potential of root growth in Boulder Creek Critical Zone Observatory, Rocky Mountains, Colorado

NASA Astrophysics Data System (ADS)

Skeets, B.; Barnard, H. R.; Byers, A.

2011-12-01

The influence of vegetation on the hydrological cycle and the possible effect of roots in geomorphological processes are poorly understood. Gordon Gulch watershed in the Front Range of the Rocky Mountains, Colorado, is a montane climate ecosystem of the Boulder Creek Critical Zone Observatory whose study adds to the database of ecohydrological work in different climates. This work sought to identify the sources of water used by different tree species and to determine how trees growing in rock outcrops may contribute to the fracturing and weathering of rock. Stable isotopes (18O and 2H) were analyzed from water extracted from soil and xylem samples. Pinus ponderosa on the south-facing slope consumes water from deeper depths during dry periods and uses newly rain-saturated soils, after rainfall events. Pinus contorta on the north -facing slope shows a similar, expected response in water consumption, before and after rain. Two trees (Pinus ponderosa) growing within rock outcrops demonstrate water use from cracks replenished by new rains. An underexplored question in geomorphology is whether tree roots growing in rock outcrops contribute to long-term geomorphological processes by physically deteriorating the bedrock. The dominant roots of measured trees contributed approximately 30 - 80% of total water use, seen especially after rainfall events. Preliminary analysis of root growth rings indicates that root growth is capable of expanding rock outcrop fractures at an approximate rate of 0.6 - 1.0 mm per year. These results demonstrate the significant role roots play in tree physiological processes and in bedrock deterioration.

Uptake and mobility of uranium in black oaks: implications for biomonitoring depleted uranium-contaminated groundwater.

PubMed

Edmands, J D; Brabander, D J; Coleman, D S

2001-08-01

In a preliminary study, the uptake and the mobility of uranium (U) by black oak trees (Quercus velutina) were assessed by measuring the isotopic composition of tree rings in two mature oak trees in a heavy metal contaminated bog in Concord, MA. The bog is adjacent to a nuclear industrial facility that has been processing depleted uranium (DU) since 1959. Over the past 40 years, DU has been leaking from an onsite holding basin and cooling pond down gradient to the bog where the oaks are located. Because DU has no source outside the nuclear industry, contamination from the industrial facility is readily discernable from uptake of natural U by measuring isotopic compositions. Isotope ratio analysis confirms the occurrence of DU in bark, sapwood and heartwood tree rings dating back to 1937, pre-dating the introduction of DU at the site by at least 20 years. Isotope dilution analysis indicates high concentrations of U (>3 ppb) in sapwood that drop rapidly to relatively constant concentrations (0.3-0.4 ppb) in heartwood. These data indicate that once incorporated into tree cells, U is mobile, possibly by diffusion through the tree wood. Concentrations of U in sapwood are approximately equal to average U concentrations in groundwater onsite over the past 10 years, suggesting that oak trees can be used as present-day bioindicators of U-contaminated groundwater. We suggest that regional sampling of oak bark and sapwood is a reasonable, inexpensive alternative to drilling wells to monitor shallow groundwater U contamination.

Patterns of Woody Growth for Brazilian Savanna (Cerrado) Trees in the Cuiaba Basin and Pantanal of Mato Grosso, Brazil

NASA Astrophysics Data System (ADS)

Zappia, A. J.; Vourlitis, G. L.; Pinto-Jr, O. B.

2015-12-01

The Brazilian savanna, locally known as cerrado, is a major ecosystem that covers a vast majority of central Brazil. Little is known about how woody growth within the cerrado is affected by soil properties such as texture and/or nutrient availability. Thus, in this study we assessed the relationship between woody growth and soil properties in the Cuiaba Basin and Pantanal of Mato Grosso, Brazil. We sampled 4-5 vegetation stands in each site that varied in hydrology, soil type, and vegetation composition and structure, and measured diameter at breast height, wood density, and soil nutrient concentration and physical properties every 5-10 m along a 100 m long transect. We hypothesized that as tree diameter at breast height increases, annual tree growth rate will decrease and that woody carbon (C) storage will increase as a function of soil nutrient availability. Our preliminary data support our hypotheses. Tree growth rates declined with tree size in both the Cuiaba Basin and the Pantanal. Rates of woody C storage, both on a per tree basis (kgC tree-1 year-1) and on a per unit ground area basis (kgC m-2 year-1) were significantly positively correlated with soil extractable phosphorus (P), calcium (Ca), and clay content, while only woody C storage on a per tree basis was positively correlated with potassium (K), magnesium (Mg), and cation exchange capacity (CEC). These data suggest that rates of woody C storage in cerrado are nutrient limited, while correspondence between C storage and soil physical properties could indicate both nutrient and water limitations to C storage.

Detection of Aspens Using High Resolution Aerial Laser Scanning Data and Digital Aerial Images

PubMed Central

Säynäjoki, Raita; Packalén, Petteri; Maltamo, Matti; Vehmas, Mikko; Eerikäinen, Kalle

2008-01-01

The aim was to use high resolution Aerial Laser Scanning (ALS) data and aerial images to detect European aspen (Populus tremula L.) from among other deciduous trees. The field data consisted of 14 sample plots of 30 m × 30 m size located in the Koli National Park in the North Karelia, Eastern Finland. A Canopy Height Model (CHM) was interpolated from the ALS data with a pulse density of 3.86/m2, low-pass filtered using Height-Based Filtering (HBF) and binarized to create the mask needed to separate the ground pixels from the canopy pixels within individual areas. Watershed segmentation was applied to the low-pass filtered CHM in order to create preliminary canopy segments, from which the non-canopy elements were extracted to obtain the final canopy segmentation, i.e. the ground mask was analysed against the canopy mask. A manual classification of aerial images was employed to separate the canopy segments of deciduous trees from those of coniferous trees. Finally, linear discriminant analysis was applied to the correctly classified canopy segments of deciduous trees to classify them into segments belonging to aspen and those belonging to other deciduous trees. The independent variables used in the classification were obtained from the first pulse ALS point data. The accuracy of discrimination between aspen and other deciduous trees was 78.6%. The independent variables in the classification function were the proportion of vegetation hits, the standard deviation of in pulse heights, accumulated intensity at the 90th percentile and the proportion of laser points reflected at the 60th height percentile. The accuracy of classification corresponded to the validation results of earlier ALS-based studies on the classification of individual deciduous trees to tree species. PMID:27873799

Impact of Scots pine (Pinus sylvestris L.) plantings on long term (137)Cs and (90)Sr recycling from a waste burial site in the Chernobyl Red Forest.

PubMed

Thiry, Yves; Colle, Claude; Yoschenko, Vasyl; Levchuk, Svjatoslav; Van Hees, May; Hurtevent, Pierre; Kashparov, Valery

2009-12-01

Plantings of Scots pine (Pinus sylvestris L.) on a waste burial site in the Chernobyl Red Forest was shown to greatly influence the long term redistribution of radioactivity contained in sub-surfaces trenches. After 15 years of growth, aboveground biomass of the average tree growing on waste trench no.22 had accumulated 1.7 times more (137)Cs than that of trees growing off the trench, and 5.4 times more (90)Sr. At the scale of the trench and according to an average tree density of 3300 trees/ha for the study zone, tree contamination would correspond to 0.024% of the (137)Cs and 2.52% of the (90)Sr contained in the buried waste material. A quantitative description of the radionuclide cycling showed a potential for trees to annually extract up to 0.82% of the (90)Sr pool in the trench and 0.0038% of the (137)Cs. A preferential (90)Sr uptake from the deep soil is envisioned while pine roots would take up (137)Cs mostly from less contaminated shallow soil layers. The current upward flux of (90)Sr through vegetation appeared at least equal to downward loss in waste material leaching as reported by Dewiere et al. (2004, Journal of Environmental Radioactivity 74, 139-150). Using a prospective calculation model, we estimated that maximum (90)Sr cycling can be expected to occur at 40 years post-planting, resulting in 12% of the current (90)Sr content in the trench transferred to surface soils through biomass turnover and 7% stored in tree biomass. These results are preliminary, although based on accurate methodology. A more integrated ecosystem study leading to the coupling between biological and geochemical models of radionuclide cycling within the Red Forest seems opportune. Such a study would help in the adequate management of that new forest and the waste trenches upon which they reside.

Tree Growth Response to Drought Along a Depth to Groundwater Gradient in Northern Wisconsin

NASA Astrophysics Data System (ADS)

Ciruzzi, D. M.; Loheide, S. P., II

2017-12-01

Understanding complex spatial and temporal patterns of drought-induced forest stress requires knowledge of the physiological drivers and ecosystem attributes that lead to or inhibit tree mortality. Prevailing meteorological conditions leading to drought may have lesser effect on vegetation that has evolved to avoid drought by accessing deeper soil moisture reserves or shallow groundwater to meet evapotranspiration demand. This is especially true in arid and semi-arid regions, yet groundwater use by trees is rarely explored in temperate systems and the extent to which groundwater use reduces drought vulnerability in these climates and regions is unknown. We explored responses of radial growth in temperate tress to wet and dry years across a depth to groundwater gradient from 1 to 9 meters in sandy forests in northern Wisconsin. The spatial patterns of tree growth in this watershed show areas where tree growth is influenced by depth to groundwater. Preliminary results showed trees in areas of shallower groundwater with low variability in tree growth and indicated that tree growth remains consistent during both wet and dry years. Conversely, trees in areas of deeper groundwater showed higher variability in tree growth during wet and dry years. We hypothesize that even in this humid region, the sandy soils do not retain sufficient moisture leading to potentially frequent water stress in trees and reductions in productivity. However, where and when accessible, we suspect trees use shallow groundwater to sustain evapotranspiration and maintain consistent growth during dry periods.

Slope Stability Analysis of Mountain Pine Beetle Impacted Areas

NASA Astrophysics Data System (ADS)

Bogenschuetz, N. M.; Bearup, L. A.; Maxwell, R. M.; Santi, P. M.

2015-12-01

The mountain pine beetle (MPB), Dendroctonus ponderosae, has caused significant tree mortality within North America. Specifically, the MPB affects ponderosa pine and lodgepole pine forests within the Rocky Mountains with approximately 3.4 million acres of forest impacted over the past 20 years. The full impacts of such unprecedented tree mortality on hydrology and slope stability is not well understood. This work studies the affects of MPB infestation on slope instability. A large-scale statistical analysis of MPB and slope stability is combined with a more in-depth analysis of the factors that contribute to slope stability. These factors include: slope aspect, slope angle, root decay, regrowth and hydrologic properties, such as water table depth and soil moisture. Preliminary results show that MPB may affect a greater number of north- and east-facing slopes. This is in accordance with more water availability and a higher MPB impacted tree density on north-facing slopes which, in turn, could potentially increase the probability of slope failure. Root strength is predicted to decrease as the roots stop transpiring 3-4 years proceeding infestation. However, this effect on the hillslope is likely being counterbalanced by the regrowth of grasses, forbs, shrubs, and trees. In addition, the increase in water table height from the lack of transpiring trees is adding a driving force to the slopes. The combination of all these factors will be used in order to assess the effects of MPB tree mortality on slope stability.

Plant Functional Type Shifts in Big Sagebrush Ecosystems: Impacts on Dryland Ecosystem Water Balance

NASA Astrophysics Data System (ADS)

Bogenschuetz, N. M.; Bearup, L. A.; Maxwell, R. M.; Santi, P. M.

2014-12-01

The mountain pine beetle (MPB), Dendroctonus ponderosae, has caused significant tree mortality within North America. Specifically, the MPB affects ponderosa pine and lodgepole pine forests within the Rocky Mountains with approximately 3.4 million acres of forest impacted over the past 20 years. The full impacts of such unprecedented tree mortality on hydrology and slope stability is not well understood. This work studies the affects of MPB infestation on slope instability. A large-scale statistical analysis of MPB and slope stability is combined with a more in-depth analysis of the factors that contribute to slope stability. These factors include: slope aspect, slope angle, root decay, regrowth and hydrologic properties, such as water table depth and soil moisture. Preliminary results show that MPB may affect a greater number of north- and east-facing slopes. This is in accordance with more water availability and a higher MPB impacted tree density on north-facing slopes which, in turn, could potentially increase the probability of slope failure. Root strength is predicted to decrease as the roots stop transpiring 3-4 years proceeding infestation. However, this effect on the hillslope is likely being counterbalanced by the regrowth of grasses, forbs, shrubs, and trees. In addition, the increase in water table height from the lack of transpiring trees is adding a driving force to the slopes. The combination of all these factors will be used in order to assess the effects of MPB tree mortality on slope stability.

Stable carbon isotopic composition of tree rings from a pine tree from Augustów Wilderness, Poland, as a temperature and local environment conditions indicator.

PubMed

Pawelczyk, Slawomira; Pazdur, Anna; Halas, Stanislaw

2004-06-01

Tree rings can be used as archives of climatic and environmental data with annual resolution. Tree rings widths, maximum late wood density and other parameters as stable composition in tree rings can be used for the reconstruction of past climatic and environmental changes. Stable carbon isotope ratios in tree rings may provide valuable information on past climatic conditions. 13C/12C ratios of plant organic matter can reflect corresponding 13C/12C ratio of atmospheric CO2 during formation of the rings. Investigations of isotopic carbon composition in tree rings from in the ecologically clean the Augustów Wilderness region in the north-eastern part of Poland (22 degrees 58'E, 53 degrees 51'N) (nowadays a sanctuary) were undertaken. Series of delta13C in alpha-cellulose and in wholewood were acquired. Those measurements constituted a part of more complex investigations of carbon isotope composition in tree rings including the measurements of radiocarbon concentration and tree ring widths. This article presents preliminary results. It is argued that contrary to the tree ring widths and delta13C in wholewood that do not reveal significant correlation with temperature, the variation of delta13C in the latewood alpha-cellulose is correlated with combined July and August temperatures. Copyright 2004 Taylor and Francis Ltd.

A preliminary model of yellow-poplar seedling establishment two years after a growing season prescribed fire in southern Appalachian oak stands

Treesearch

Henry McNab

2016-01-01

Factors affecting the density and distribution of yellow-poplar regeneration after a single growing season prescribed fire were studied in mature upland oak stands in the southern Appalachian Mountains. In burned and unburned stands, density of one and two year old yellow-poplar seedlings was inventoried within 50 m from isolated yellow-poplar canopy seed trees in...

Botanical Evidence of the Modern History of Nisqually Glacier, Washington

USGS Publications Warehouse

Sigafoos, Robert S.; Hendricks, E.L.

1961-01-01

A knowledge of the areas once occupied by mountain glaciers reveals at least part of the past behavior of these glaciers. From this behavior, inferences of past climate can be drawn. The maximum advance of Nisqually Glacier in the last thousand years was located, and retreat from this point is believed to have started about 1840. The maximum downvalley position of the glacier is marked by either a prominent moraine or by a line of difference between stands of trees of strikingly different size and significantly different age. The thousand-year age of the forest beyond the moraine or line between abutting stands represents the minimum time since the surface was glaciated. This age is based on the age of the oldest trees, plus an estimated interval required for the formation of humus, plus evidence of an ancient fire, plus an interval of deposition of pyroclastics. The estimate of the date when Nisqually Glacier began to retreat from its maximum advance is based upon the ages of the oldest trees plus an interval of 5 years estimated as the time required for the establishment of trees on stable moraines. This interval was derived from a study of the ages of trees growing at locations of known past positions of the glacier. Reconnaissance studies were made on moraines formed by Emmons and Tahoma Glaciers. Preliminary analyses of these data suggest that Emmons Glacier started to recede from its maximum advance in about 1745. Two other upvalley moraines mark positions from which recession started about 1849 and 1896. Ages of trees near Tahoma Glacier indicate that it started to recede from its position of maximum advance in about 1635. About 1835 Tahoma Glacier started to recede again from another moraine formed by a readvance that ter minated near the 1635 position.

Reliability studies of Integrated Modular Engine system designs

NASA Technical Reports Server (NTRS)

Hardy, Terry L.; Rapp, Douglas C.

1993-01-01

A study was performed to evaluate the reliability of Integrated Modular Engine (IME) concepts. Comparisons were made between networked IME systems and non-networked discrete systems using expander cycle configurations. Both redundant and non-redundant systems were analyzed. Binomial approximation and Markov analysis techniques were employed to evaluate total system reliability. In addition, Failure Modes and Effects Analyses (FMEA), Preliminary Hazard Analyses (PHA), and Fault Tree Analysis (FTA) were performed to allow detailed evaluation of the IME concept. A discussion of these system reliability concepts is also presented.

Reliability studies of integrated modular engine system designs

NASA Technical Reports Server (NTRS)

Hardy, Terry L.; Rapp, Douglas C.

1993-01-01

A study was performed to evaluate the reliability of Integrated Modular Engine (IME) concepts. Comparisons were made between networked IME systems and non-networked discrete systems using expander cycle configurations. Both redundant and non-redundant systems were analyzed. Binomial approximation and Markov analysis techniques were employed to evaluate total system reliability. In addition, Failure Modes and Effects Analyses (FMEA), Preliminary Hazard Analyses (PHA), and Fault Tree Analysis (FTA) were performed to allow detailed evaluation of the IME concept. A discussion of these system reliability concepts is also presented.

Reliability studies of integrated modular engine system designs

NASA Astrophysics Data System (ADS)

Hardy, Terry L.; Rapp, Douglas C.

1993-06-01

A study was performed to evaluate the reliability of Integrated Modular Engine (IME) concepts. Comparisons were made between networked IME systems and non-networked discrete systems using expander cycle configurations. Both redundant and non-redundant systems were analyzed. Binomial approximation and Markov analysis techniques were employed to evaluate total system reliability. In addition, Failure Modes and Effects Analyses (FMEA), Preliminary Hazard Analyses (PHA), and Fault Tree Analysis (FTA) were performed to allow detailed evaluation of the IME concept. A discussion of these system reliability concepts is also presented.

Reliability studies of Integrated Modular Engine system designs

NASA Astrophysics Data System (ADS)

Hardy, Terry L.; Rapp, Douglas C.

1993-06-01

A study was performed to evaluate the reliability of Integrated Modular Engine (IME) concepts. Comparisons were made between networked IME systems and non-networked discrete systems using expander cycle configurations. Both redundant and non-redundant systems were analyzed. Binomial approximation and Markov analysis techniques were employed to evaluate total system reliability. In addition, Failure Modes and Effects Analyses (FMEA), Preliminary Hazard Analyses (PHA), and Fault Tree Analysis (FTA) were performed to allow detailed evaluation of the IME concept. A discussion of these system reliability concepts is also presented.

The clinical evaluation of Pterocarpus santalinus Linn. Ointment on lower extremity wounds--a preliminary report.

PubMed

Biswas, Tuhin Kanti; Maity, Lakshmi Narayan; Mukherjee, Biswapati

2004-12-01

Pterocarpus santalinus is described in the Ayurveda for its wide spectrum of medicinal properties including wound healing. Previously the authors reported animal studies that demonstrated that an ointment made from the bark of this tree was effective without any toxic effects. They used the same ointment in 6 cases of lower extremity wounds. Healing was observed in all wounds. The study was not controlled, the findings are presented here as case studies. Further studies are planned to develop a wound healing ointment from a locally available and inexpensive plant.

Can dendrochronology procedures estimate historical Tree Water Footprint?

NASA Astrophysics Data System (ADS)

Fernandes, Tarcísio J. G.; Del Campo, Antonio D.; Molina, Antonio J.

2013-04-01

Whole estimates of tree water use are becoming increasingly important in forest science and forest scientists have long sought to develop reliable techniques to estimate tree water use. In this sense accurately determining or estimate the quantity of water transpired by trees and forests is important and can be used to determine "green" water footprint. The use of dendrochronology is relative common in the study of effects and interactions between growth and climatic variables, but few studies deal with the relationship with water footprint. The main objective of this study is determining the historical tree water-use in a planted stand by dendrochronological approaches. This study was performed in South-eastern Spain, in an area covered by 50-60 years old Pinus halepensis Mil. plantations with high tree density (ca.1288/ha) due to low forest management. The experimental set-up consisted of two plots (30x30m), one corresponding to a thinning treatment performed in 2008 (t10) and the other thinned in 1998 (t1) to assess the mid-term effects of thinning. After one year of thinning four representative trees were select in each plot to measure transpiration by heat pulse sensor (sapflow velocity, vs). The accumulated daily values of transpiration (L day-1) were estimated multiplying the values of vs by sapwood area of each selected tree. After transpiration measurements two cores per tree were taken for establishing the tree-rings chronologies. The cores were prepared, their ring-width were measured and standardised in basal area increment index (BAI-i) following usual dendrochronological methods. The dendrochronology analyses showed a general variability in ring width during the initial growth (15 years), while in the following years the width rings were very small, conditioned by climate. The year after thinning (1999 or 2009) all trees in the treatments showed significant increases in ring width. The average vs for t1 and t10 were 3.59 cm h-1 and 1.95 cm h-1, and transformed into tree transpiration using sapwood area, obtaining 6,768 and 5,844 litres per tree, respectively. BAI-i and vs were significantly related. The Pearson correlation was higher and positive when the growth from the rings formed during the span of sap flow measurement was considered, i.e., the 2009 and 2010 rings. An empirical model was fitted for the BAI-i and vs allowing a preliminary reconstruction of the stand's transpiration history. Linear regressions between vs and BAI-i were significant (R2 ≈ 0.65). Applying the linear equation in each BAI-i along the time (1960-2010) it was possible to reconstruct water use per tree, sometimes defined as the "green" water footprint. In conclusion dendrochronology methods can be used to estimate the Tree-Water-Footprint, and more experimental data should be used for better accuracy.

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

PubMed Central

Staton, Margaret; Best, Teodora; Khodwekar, Sudhir; Owusu, Sandra; Xu, Tao; Xu, Yi; Jennings, Tara; Cronn, Richard; Arumuganathan, A. Kathiravetpilla; Coggeshall, Mark; Gailing, Oliver; Liang, Haiying; Romero-Severson, Jeanne; Schlarbaum, Scott; Carlson, John E.

2015-01-01

Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native hardwood tree species representing a broad phylogenetic spectrum, we used low coverage whole genome sequencing from multiplex Illumina paired ends to economically profile their genomic content. For six species, the genome content was further analyzed by flow cytometry in order to determine the nuclear genome size. Sequencing yielded a depth of 0.8X to 7.5X, from which in silico analysis yielded preliminary estimates of gene and repetitive sequence content in the genome for each species. Thousands of genomic SSRs were identified, with a clear predisposition toward dinucleotide repeats and AT-rich repeat motifs. Flanking primers were designed for SSR loci for all ten species, ranging from 891 loci in sugar maple to 18,167 in redbay. In summary, we have demonstrated that useful preliminary genome information including repeat content, gene content and useful SSR markers can be obtained at low cost and time input from a single lane of Illumina multiplex sequence. PMID:26698853

The utility of DNA sequences of an intron from the beta-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae).

PubMed

Prychitko, T M; Moore, W S

1997-10-01

Estimating phylogenies from DNA sequence data has become the major methodology of molecular phylogenetics. To date, molecular phylogenetics of the vertebrates has been very dependent on mtDNA, but studies involving mtDNA are limited because the several genes comprising the mt-genome are inherited as a single linkage group. The only apparent solution to this problem is to sequence additional genes, each representing a distinct linkage group, so that the resultant gene trees provide independent estimates of the species tree. There exists the need to find novel gene sequences which contain enough phylogenetic information to resolve relationships between closely related species. A possible source is the nuclear-encoded introns, because they evolve more rapidly than exons. We designed primers to amplify and sequence the 7 intron from the beta-fibrinogen gene for a recently evolved group, the woodpeckers. We sequenced the entire intron for 10 specimens representing five species. Nucleotide substitutions are randomly distributed along the length of the intron, suggesting selective neutrality. A preliminary analysis indicates that the phylogenetic signal in the intron is as strong as that in the mitochondrial encoded cytochrome b (cyt b) gene. The topology of the beta-fibrinogen tree is identical to that of the cyt b tree. This analysis demonstrates the ability of the 7 intron of beta-fibrinogen to provide well resolved, independent gene trees for recently evolved groups and establishes it as a source of sequences to be used in other phylogenetic studies. Copyright 1997 Academic Press

Climate-growth relationships of Abies spectabilis in a central Himalayan treeline ecotone

NASA Astrophysics Data System (ADS)

Schwab, Niels; Kaczka, Ryszard J.; Schickhoff, Udo

2017-04-01

Climate warming is expected to induce treelines to advance to higher elevations. Empirical studies in diverse mountain ranges, however, give evidence of both advancing alpine treelines as well as rather insignificant responses. The large spectrum of responses is not fully understood. In the framework of investigating the sensitivity and response of a near-natural treeline ecotone in Rolwaling Himal, Nepal, to climate warming we present results from dendroclimatological analyses of Abies spectabilis (Himalayan Fir) increment cores. Tree ring width was measured and cross-dated. After standardization, the chronology was correlated with temperature and precipitation variables. Preliminary results point to positive correlations with autumn temperature and precipitation. We will present improved climate-growth relationships. The resulting climate - tree growth relationships may be used as an indication of future growth patterns and treeline dynamics under climate change conditions.

A preliminary report on the measurements of forest canopies with C-band radar scatterometer at NASA/NSTL

NASA Technical Reports Server (NTRS)

Wu, S. T.

1985-01-01

This paper presents preliminary results of C-band radar scatterometer measurements of forest canopies of southeastern forests in the vicinity of NASA/NSTL. The results are as follows: (1) the radar backscattering coefficients (BSC) of deciduous forests such as oak, maple, blackgum, and cypress are higher than those of coniferous forests such as slash pine plantation and natural pine; (2) at a large incidence angle, where polarization effect is significant, and by ranging measurement, the VV polarization BSC obtain peak value at the first few meters from the canopy top and decrease rather quickly, while the HH polarization BSC obtain peak value at longer distances from the canopy top and decrease rather slowly through the canopy; and (3) using the active radar calibrator for tree canopy attenuation measurement of a dense and a sparse live oak, it is found that the tree canopies with higher attenuations have higher BSC for all three polarizations, with VV polarization containing the largest differential (2.2 dB).

Preliminary Magnetostratigraphic Study of the Split Mountain and Lower Imperial Groups, Split Mountain Gorge, Western Salton Trough, CA

NASA Astrophysics Data System (ADS)

Fluette, A. L.; Housen, B. A.; Dorsey, R. J.

2004-12-01

We present preliminary results of a magnetostratigraphic study of Miocene-Pliocene sedimentary rocks of the Split Mt. and lower Imperial Groups exposed in Split Mt. Gorge and eastern Fish Creek-Vallecito basin, western Salton Trough. Precise age control for the base of this thick section is needed to improve our understanding of the early history of extension-related subsidence in this region. The geologic setting and stratigraphic framework are known from previous work by Dibblee (1954, 1996), Woodard (1963), Kerr (1982), Winker (1987), Kerr and Kidwell (1991), Winker and Kidwell (1986; 1996), and others. We have analyzed Upper Miocene to lower Pliocene strata exposed in a conformable section in Split Mt. Gorge, including (in order from the base; nomenclature of Winker and Kidwell, 1996): (1) Split Mt. Group: Red Rock Fm alluvial sandstone; Elephant Trees alluvial conglomerate; and lower megabreccia unit; and (2) lower part of Imperial Group, including: Fish Creek Gypsum; proximal to distal turbidites of the Latrania Fm and Wind Caves Mbr of Deguynos Fm; upper megabreccia unit; marine mudstone and rhythmites of the Mud Hills Mbr (Deguynos Fm); and the basal part of the Yuha Mbr (Deguynos Fm). Measured thickness from the base of the Elephant Trees Cgl to the base of the Yuha Mbr is about 1050 m, consistent with previous measurements of Winker (1987). Paleomagnetic samples were collected at approximately 10 m intervals throughout this section. The upper portion of our sampled section overlaps with the lower part of the section sampled for magnetostratigraphic study by Opdyke et al. (1977) and Johnson et al. (1983). They interpreted the base of their section to be about 4.3 Ma, and calculated an average sedimentation rate of approximately 5.5 mm/yr for the lower part of their section. Good-quality preliminary results from 15 paleomagnetic sites distributed throughout our sampled section permit preliminary identification of 6 polarity zones. Based on regional mapping and stratigraphic correlations (Winker and Kidwell, 1996) and extrapolation of the Johnson et al. (1983) sedimentation rates, we tentatively correlate two normal-polarity intervals in the lower part of our section to Chrons C3An.1n and C3An.2n of the geomagnetic polarity time scale of Cande and Kent (1995). If correct, this result would suggest that the lowest reversed-polarity portion of the Red Rock Fm near the base of the section should be correlated to Chron C3Ar.2r, and would be between 6.57 and 6.94 Ma in age. An alternative, but less likely, correlation for the reverse-polarity interval at the base of the section would be with Chron C2Br (7.09-7.43 Ma). This has significant implications for the timing of earliest extension-related basin formation in the western Salton Trough, and potentially raises new questions about the relationship of the Red Rock and Elephant Trees Formations to the Alverson Volcanics (22-14 Ma; Ruisaard, 1979; Kerr, 1982). These preliminary results will be tested and refined with a complete analysis of the remaining samples.

Interspecific differences and commonalities in maternity roosting by tree cavity-roosting bats over a maternity season in a timber production landscape.

PubMed

Rueegger, Niels; Law, Brad; Goldingay, Ross

2018-01-01

Understanding maternity roost requirements is fundamental to guide timber production forest management given such roosts are vital to sustain bat populations. We tracked lactating females of three tree cavity-roosting species: Gould's long-eared bat (Nyctophilus gouldi) (n = 7), eastern broad-nosed bat (Scotorepens orion) (n = 6) and little forest bat (Vespadelus vulturnus) (n = 25), over five weeks in young (predominately <5 years old) forest regenerating from heavy timber harvest in southeast Australia. We aimed to investigate interspecific maternity roost selection in a regenerating landscape and by doing so, increase our understanding of the three species' roost ecology. Sixteen V. vulturnus, 15 N. gouldi and six S. orion unique maternity roost trees were located. Bats displayed a degree of maternity roost selection plasticity, however, interspecific differences were found. Nyctophilus gouldi roosted selectively in retained riparian buffers, in trees of high senescence and switched roosts every day. Vespadelus vulturnus roosted in logged areas and displayed high roost site fidelity, with one roost used for 33 consecutive days. Scotorepens orion selected large live trees of low senescence. The preliminary data for this species suggests that females roost most days in 'primary' roosts but display a roost switching behaviour conforming to the fission-fusion model. Dead trees were identified to be important for both N. gouldi and V. vulturnus. Historical and recent logging at our study area drastically reduced cavity-bearing tree density to 1.4 trees per hectare in the logging zones (outside of exclusion areas), potentially limiting local populations of tree cavity-roosting bats and other cavity-dependent wildlife. Our data demonstrate that forest management must consider a range of maternity roost requirements to accommodate differences among species and highlight the importance of exclusion areas for roost habitat. We propose that an expanded 'retention forestry' approach should be implemented in logged areas that includes in-perpetuity forest patch retention to increase habitat complexity and continuity.

Interspecific differences and commonalities in maternity roosting by tree cavity-roosting bats over a maternity season in a timber production landscape

PubMed Central

Law, Brad; Goldingay, Ross

2018-01-01

Understanding maternity roost requirements is fundamental to guide timber production forest management given such roosts are vital to sustain bat populations. We tracked lactating females of three tree cavity-roosting species: Gould's long-eared bat (Nyctophilus gouldi) (n = 7), eastern broad-nosed bat (Scotorepens orion) (n = 6) and little forest bat (Vespadelus vulturnus) (n = 25), over five weeks in young (predominately <5 years old) forest regenerating from heavy timber harvest in southeast Australia. We aimed to investigate interspecific maternity roost selection in a regenerating landscape and by doing so, increase our understanding of the three species’ roost ecology. Sixteen V. vulturnus, 15 N. gouldi and six S. orion unique maternity roost trees were located. Bats displayed a degree of maternity roost selection plasticity, however, interspecific differences were found. Nyctophilus gouldi roosted selectively in retained riparian buffers, in trees of high senescence and switched roosts every day. Vespadelus vulturnus roosted in logged areas and displayed high roost site fidelity, with one roost used for 33 consecutive days. Scotorepens orion selected large live trees of low senescence. The preliminary data for this species suggests that females roost most days in ‘primary’ roosts but display a roost switching behaviour conforming to the fission-fusion model. Dead trees were identified to be important for both N. gouldi and V. vulturnus. Historical and recent logging at our study area drastically reduced cavity-bearing tree density to 1.4 trees per hectare in the logging zones (outside of exclusion areas), potentially limiting local populations of tree cavity-roosting bats and other cavity-dependent wildlife. Our data demonstrate that forest management must consider a range of maternity roost requirements to accommodate differences among species and highlight the importance of exclusion areas for roost habitat. We propose that an expanded ‘retention forestry’ approach should be implemented in logged areas that includes in-perpetuity forest patch retention to increase habitat complexity and continuity. PMID:29543883

Tree Removal as a Mechanism to Reverse Ecohydrologic Thresholds in Pinyon- and Juniper-Encroached Shrublands

NASA Astrophysics Data System (ADS)

Williams, C. J.; Pierson, F. B.; Nouwakpo, S.; Weltz, M.

2016-12-01

Pinyon and juniper encroachment has altered vegetation structure, ecological condition, hydrologic function, and delivery of ecosystem goods and services on millions of hectares of sagebrush rangelands in the western US. Pinyon and juniper out-compete shrubs and herbaceous vegetation for water and nutrients and facilitate a decline in vigor and cover of understory plants. These cover declines educe a shift from biotic-controlled resource retention to abiotic-driven losses of critical soil resources over time (soil erosion feedback). Our research objective was to evaluate tree removal by mastication, burning, and cutting as a threshold-reversal mechanism for restoration of sagebrush steppe ecohydrologic resilience over a ten year period. We examined vegetation, soils, infiltration, runoff, and erosion from artificial rainfall and concentrated flow experiments across multiple scales in two late succession woodlands before and 1, 2, and 10 yr after tree removal to address two research questions: 1) Can tree removal decrease late-succession woodland ecohydrologic resilience by increasing vegetation and ground cover within the first 10 yr post-treatment?, and 2) Is the soil erosion feedback reversible in the later stages of woodland encroachment? Distributing shredded tree debris into bare areas improved infiltration and reduced soil erosion in the first few years following tree mastication. Cutting and placing downed trees in bare patches had no initial effect on runoff and erosion. Burning initially reduced infiltration and increased runoff and erosion at the sites, but favorable grass and forb cover recruitment 2 yr after burning reduced erosion from the mostly bare intercanopy between tree mounds. Our presentation of the overall study will chronicle these published pre-fire, 1 yr, and 2 yr responses and preliminary results from the 10th yr post-treatment to address the questions outlined above. The collective results advance understanding of pinyon and juniper encroachment on vegetation, hydrology, and erosion processes and the short-term and decadal ecohydrologic recovery of sagebrush steppe following tree removal by mastication, burning, and cutting.

Hybrid model of arm for analysis of regional blood oxygenation in non-invasive optical diagnostics

NASA Astrophysics Data System (ADS)

Nowocień, Sylwester; Mroczka, Janusz

2017-06-01

The paper presents a new comprehensive approach to modeling and analysis of processes occurring during the blood flow in the arm's small vessels as well as non-invasive measurement method of mixed venous oxygen saturation. During the work, a meta-analysis of available physiological data was performed and based on its result a hybrid model of forearm vascular tree was proposed. The model, in its structure, takes into account a classical nonlinear hydro-electric analogy in conjunction with light-tissue interaction. Several geometries of arm vascular tree obtained from magnetic resonance angiography (MRA) image were analyzed which allowed to proposed the structure of electrical analog network. Proposed model allows to simulate the behavior of forearm blood flow from the vascular tree mechanics point of view, as well as effects of the impact of cuff and vessel wall mechanics on the recorded photoplethysmographic signals. In particular, it allows to analyze the reaction and anatomical effects in small vessels and microcirculation caused by occlusive maneuver in selected techniques, what was of particular interest to authors and motivation to undertake research in this area. Preliminary studies using proposed model showed that inappropriate selection of occlusion maneuver parameters (e.g. occlusion time, cuff pressure etc.), cause dangerous turbulence of blood flow in the venous section of the vascular tree.

Routing Topologies of Wireless Sensor Networks for Health Monitoring of a Cultural Heritage Site.

PubMed

Aparicio, Sofía; Martínez-Garrido, María I; Ranz, Javier; Fort, Rafael; Izquierdo, Miguel Ángel G

2016-10-19

This paper provides a performance evaluation of tree and mesh routing topologies of wireless sensor networks (WSNs) in a cultural heritage site. The historical site selected was San Juan Bautista church in Talamanca de Jarama (Madrid, Spain). We report the preliminary analysis required to study the effects of heating in this historical location using WSNs to monitor the temperature and humidity conditions during periods of weeks. To test which routing topology was better for this kind of application, the WSNs were first deployed on the upper floor of the CAEND institute in Arganda del Rey simulating the church deployment, but in the former scenario there was no direct line of sight between the WSN elements. Two parameters were selected to evaluate the performance of the routing topologies of WSNs: the percentage of received messages and the lifetime of the wireless sensor network. To analyze in more detail which topology gave the best performance, other communication parameters were also measured. The tree topology used was the collection tree protocol and the mesh topology was the XMESH provided by MEMSIC (Andover, MA, USA). For the scenarios presented in this paper, it can be concluded that the tree topology lost fewer messages than the mesh topology.

Do chimpanzees (Pan troglodytes schweinfurthii) exhibit sleep related behaviors that minimize exposure to parasitic arthropods? A preliminary report on the possible anti-vector function of chimpanzee sleeping platforms.

PubMed

Samson, David R; Muehlenbein, Michael P; Hunt, Kevin D

2013-01-01

Great apes spend half of their lives in a nightly "nest" or sleeping platform (SP), a complex object created by modifying foliage, which functions as a stable substrate on which to sleep. Of the several purported functions of SPs, one hypothesis is that they protect against parasitic infection. Here we investigate the role of SP site choice in avoiding molestation by arthropods. This study presents preliminary data on the insect-repellent properties of preferred sleeping tree species Cynometra alexandri. Insect traps were deployed in gallery forest habitats in which chimpanzees typically "nest." We compared traps placed adjacent to SPs artificially manufactured with C. alexandri trees to an open area within the same habitat. Multiple measures of arthropod counts indicate that simulated C. alexandri SP sites have fewer arthropods than similar non-SP sites. Volatile compounds secreted by C. alexandri foliage are hypothesized to repel annoying arthropods and/or mask chimpanzee olfactory signals. Of the total insects captured (n = 6,318), n = 145 were mosquitoes. Of the total mosquitoes captured, n = 47 were identified as Anopheles (female, n = 12). The prominent malarial vector Anopheles gambiae was identified among the captured mosquito sample. These results suggest that the presence of broken branches of the tree species C. alexandri reduce the amount of insects a chimpanzee is exposed to throughout a night's sleep. This great ape behavioral and socio-technological adaptation may have evolved, in part, to increase quality of sleep as well as decrease exposure to vectors of disease.

Roles of Urban Tree Canopy and Buildings in Urban Heat Island Effects: Parameterization and Preliminary Results

NASA Technical Reports Server (NTRS)

Loughner, Christopher P.; Allen, Dale J.; Zhang, Da-Lin; Pickering, Kenneth E.; Dickerson, Russell R.; Landry, Laura

2012-01-01

Urban heat island (UHI) effects can strengthen heat waves and air pollution episodes. In this study, the dampening impact of urban trees on the UHI during an extreme heat wave in the Washington, D.C., and Baltimore, Maryland, metropolitan area is examined by incorporating trees, soil, and grass into the coupled Weather Research and Forecasting model and an urban canopy model (WRF-UCM). By parameterizing the effects of these natural surfaces alongside roadways and buildings, the modified WRF-UCM is used to investigate how urban trees, soil, and grass dampen the UHI. The modified model was run with 50% tree cover over urban roads and a 10% decrease in the width of urban streets to make space for soil and grass alongside the roads and buildings. Results show that, averaged over all urban areas, the added vegetation decreases surface air temperature in urban street canyons by 4.1 K and road-surface and building-wall temperatures by 15.4 and 8.9 K, respectively, as a result of tree shading and evapotranspiration. These temperature changes propagate downwind and alter the temperature gradient associated with the Chesapeake Bay breeze and, therefore, alter the strength of the bay breeze. The impact of building height on the UHI shows that decreasing commercial building heights by 8 m and residential building heights by 2.5 m results in up to 0.4-K higher daytime surface and near-surface air temperatures because of less building shading and up to 1.2-K lower nighttime temperatures because of less longwave radiative trapping in urban street canyons.

Biogeomorphic and pedogenic impact of trees in three soil regions

NASA Astrophysics Data System (ADS)

Pawlik, Łukasz; Šamonil, Pavel

2017-04-01

Vegetation is an important factor of soil formation which together with topography, geology, climate and time modulates chemical and physical soil characteristics. Tree/soils/regolith interaction was recognized in recently uprooted trees and relict treethrow mounds and pits. In our present study we focus on effects of individual standing trees in pedogenesis and biogeomorphic processes. Constant pressure of tree root systems, changing hydric and temperature regime, together with rhizospheric microbes and root mycorrhizal associations may cause multiscale alterations to regolith and soils. We hypothesize different soil chemical properties under old tree stumps compared to unaffected control pedon resulted from affected pedogenetical pathways at the analyzed microsites. The present project highlights changes in soil properties under tree stumps in three different soil regions: Haplic Cambisols (Turbacz Reserve, Gorce Mts., Poland, hereafter HC), Entic Podzols (Zofin Reserve, Novohradske Mts., the Czech Republic, hereafter EP), Albic Podzols (Upper Peninsula, Michigan, USA, hereafter AP). These three regions represent different degrees of soil weathering and leaching. Pedons under fir, beech and hemlock stumps, as well as unaffected control pedons were sampled and laboratory analyzed for several chemical properties; active and exchangeable soil reaction, oxidized carbon, total nitrogen, and various forms of Fe, Al, Mn and Si. At the same time we studied age of the sampled tree stumps, as well as age of their death using radiocarbon technique and dendrochronology. While no effects of the soil-trees interactions can be visible on hillslope surface, we found important evidence of biomechanical activities of tree roots (e.g. root channels) and biochemical changes which add to the discussion about biogeomorphic and pedogenic significance of trees and tree roots as drivers of biomechanical weathering and soil processes in the decadal and centennial time scales. Preliminary results from the first site at Turbacz (fir tree stump) indicate some significant differences with higher amount of Cox, clay and C-THS (carbon content in total humus substances), pHH2O and Fe in the control soil profile as compared to stump soil profiles. Content of various chemical indicators were more homogenous between soil profiles at the second microsite (beech). There were significant differences between soil regions for the following chemical properties: N (nitrogen) (AP vs. EP), Cox (oxidized carbon) (AP vs. EP), C-HA (carbon content in humic acids) (AP vs. HC), C-FA (carbon content in fulvic acids) (AP vs. EP), Fed (crystalline forms of iron) (AP and EP vs. HC).

Preliminary report on the segregation of resistance in chestnuts to infestation by oriental chestnut gall wasp

Treesearch

S Anagnostakis; Stacy Clark; Henry Mcnab

2009-01-01

In 1995, hybrid chestnuts were planted in North Carolina, (southern U.S.A.),where the introduced insect Oriental Chestnut Gall Wasp (Dryocosmus kuriphilus) ispresent. Of the 93 trees planted, 53 survived 12 years and were evaluated for the

Using Tree-Rings and Remote Sensing to Investigate Forest Productivity Response to Landscape Fragmentation in Northeastern Algeria

NASA Astrophysics Data System (ADS)

Rouini, N.; Lepley, K. S.; Messaoudene, M.

2017-12-01

Remote sensing and dendrochronology are valuable tools in the face of climate change and land use change, yet the connection between these resources remains largely unexploited. Research on forest fragmentation is mainly focused on animal groups, while our work focuses on tree communities. We link tree-rings and remotely-sensed Normalized Difference Vegetation Index (NDVI) using seasonal correlation analysis to investigate forest primary productivity response to fragmentation. Tree core samples from Quercus afares have been taken from two sites within the Guerrouche Forest in northeastern Algeria. The first site is located within a very fragmented area while the second site is intact. Fragmentation is estimated to have occurred with the construction of a road in 1930. We find raw tree-ring width chronologies from each site reveal growth release in the disturbed site after 1930. The means of each chronology for the 1930 to 2016 period are statistically different (p < 0.01). Based on these preliminary results we hypothesize that reconstructed primary productivity (NDVI) will be higher in the fragmented site after fragmentation took place.

Industrial and occupational ergonomics in the petrochemical process industry: a regression trees approach.

PubMed

Bevilacqua, M; Ciarapica, F E; Giacchetta, G

2008-07-01

This work is an attempt to apply classification tree methods to data regarding accidents in a medium-sized refinery, so as to identify the important relationships between the variables, which can be considered as decision-making rules when adopting any measures for improvement. The results obtained using the CART (Classification And Regression Trees) method proved to be the most precise and, in general, they are encouraging concerning the use of tree diagrams as preliminary explorative techniques for the assessment of the ergonomic, management and operational parameters which influence high accident risk situations. The Occupational Injury analysis carried out in this paper was planned as a dynamic process and can be repeated systematically. The CART technique, which considers a very wide set of objective and predictive variables, shows new cause-effect correlations in occupational safety which had never been previously described, highlighting possible injury risk groups and supporting decision-making in these areas. The use of classification trees must not, however, be seen as an attempt to supplant other techniques, but as a complementary method which can be integrated into traditional types of analysis.

A synthetic leaf: the biomimetic potential of graphene oxide

NASA Astrophysics Data System (ADS)

Lamb, Marilla; Koch, George W.; Morgan, Eric R.; Shafer, Michael W.

2015-03-01

Emerging materials such as graphene oxide (GO) have micro and nano features that are functionally similar to those in plant cell walls involved in water transport. Therefore, it may now be possible to design and build biomimetic trees to lift water via mechanisms similar to those employed by trees, allowing for potential applications such as passive water pumping, filtering, and evaporative cooling. The tallest trees can raise large volumes of water to over 100 meters using only the vapor pressure gradient between their leaves and the atmosphere. This phenomenon occurs in all terrestrial plants when capillary forces generated in the microscopic pores in the cell walls of leaves are collectively applied to large diameter xylem conduits. The design of a synthetic tree that mimics these mechanisms will allow water to be moved to heights greater than is currently possible by any engineered system that does not require the use of a positive pressure pump. We are testing the suitability of membranous GO as the leaf of a synthetic tree and present an analysis in support of this design. In addition, we include results from a preliminary design using ceramics.

Applications of Photogrammetry for Analysis of Forest Plantations. Preliminary study: Analysis of individual trees

NASA Astrophysics Data System (ADS)

Mora, R.; Barahona, A.; Aguilar, H.

2015-04-01

This paper presents a method for using high detail volumetric information, captured with a land based photogrammetric survey, to obtain information from individual trees. Applying LIDAR analysis techniques it is possible to measure diameter at breast height, height at first branch (commercial height), basal area and volume of an individual tree. Given this information it is possible to calculate how much of that tree can be exploited as wood. The main objective is to develop a methodology for successfully surveying one individual tree, capturing every side of the stem a using high resolution digital camera and reference marks with GPS coordinates. The process is executed for several individuals of two species present in the metropolitan area in San Jose, Costa Rica, Delonix regia (Bojer) Raf. and Tabebuia rosea (Bertol.) DC., each one with different height, stem shape and crown area. Using a photogrammetry suite all the pictures are aligned, geo-referenced and a dense point cloud is generated with enough detail to perform the required measurements, as well as a solid tridimensional model for volume measurement. This research will open the way to develop a capture methodology with an airborne camera using close range UAVs. An airborne platform will make possible to capture every individual in a forest plantation, furthermore if the analysis techniques applied in this research are automated it will be possible to calculate with high precision the exploit potential of a forest plantation and improve its management.

Can-Filled Crash Barrier

NASA Technical Reports Server (NTRS)

Wilson, A. H.

1983-01-01

Crash barrier composed largely of used aluminum beverage cans protects occupants of cars in collisions with poles or trees. Lightweight, can-filled barrier very effective in softening impact of an automobile in head-on and off-angle collisions. Preliminary results indicate barrier is effective in collisions up to 40 mi/h (64 km/h).

Potential concerns for tree response from stem injection

Treesearch

Kevin T. Smith; Phillip A. Lewis

2005-01-01

Stem injection of imidacloprid is an available component of management strategies for hemlock woolly adelgid. Preliminary observations of similar treatments of maple and ash show that the injury sustained by injection warrants investigation of the wound response in eastern hemlock. Such investigations need adequate experimental controls to identify the role of...

Preliminary guidelines for prescribed burning under standing timber in western larch/douglas-fir forests

Treesearch

Rodney A. Norum

1977-01-01

Guidelines are offered for safe, effective fire treatments in western larch/Douglas-fir forests. Describes procedures for estimating and limiting the scorching of tree crows. Provides a method for predicting percentage of the forest floor that will be burned down to mineral soil.

Use of CHAID Decision Trees to Formulate Pathways for the Early Detection of Metabolic Syndrome in Young Adults

PubMed Central

Liu, Pei-Yang

2014-01-01

Metabolic syndrome (MetS) in young adults (age 20–39) is often undiagnosed. A simple screening tool using a surrogate measure might be invaluable in the early detection of MetS. Methods. A chi-squared automatic interaction detection (CHAID) decision tree analysis with waist circumference user-specified as the first level was used to detect MetS in young adults using data from the National Health and Nutrition Examination Survey (NHANES) 2009-2010 Cohort as a representative sample of the United States population (n = 745). Results. Twenty percent of the sample met the National Cholesterol Education Program Adult Treatment Panel III (NCEP) classification criteria for MetS. The user-specified CHAID model was compared to both CHAID model with no user-specified first level and logistic regression based model. This analysis identified waist circumference as a strong predictor in the MetS diagnosis. The accuracy of the final model with waist circumference user-specified as the first level was 92.3% with its ability to detect MetS at 71.8% which outperformed comparison models. Conclusions. Preliminary findings suggest that young adults at risk for MetS could be identified for further followup based on their waist circumference. Decision tree methods show promise for the development of a preliminary detection algorithm for MetS. PMID:24817904

Ecohydrologic Changes due to Tree Expansion into Tundra in the Polar Urals, Russia

NASA Astrophysics Data System (ADS)

Ivanov, V. Y.; Wang, J.; El Sharif, H. A.; Liu, D.; Sheshukov, A. Y.; Mazepa, V.; Shiyatov, S.; Sokolov, A.

2017-12-01

The Arctic has been warming at an accelerating rate over the last several decades and the changing climate has caused the invasion of trees and shrubs into tundra across the polar regions of Alaska, Canada, and Russia. These vegetation changes may have the potential to impact regional hydrology and climate. This study aims to develop mechanistic and quantitative understanding of implications of forest encroachment into tundra. Specifically, for several areas with well-documented larch and spruce expansion in the Polar Urals and southern Yamal Peninsula of Russia over 1960-2010s, we hypothesize that the encroachment process alters the seasonality of energy budget characterized by enhanced total evapotranspiration and concomitant subsurface warming. We are collecting a comprehensive set of field observational data on micrometeorology, snow conditions, radiative fluxes, tree sap flows, soil temperature, moisture, and heat fluxes, and active layer thickness. A novel model of maximum entropy production (MEP) is used to derive the surface energy budgets as the partition of radiative fluxes into turbulent and conductive heat fluxes across the ecotone interface. We are presenting preliminary findings that illustrate the identified differences of seasonal snow and heat budget regimes for two contrasting sites: one of which has experienced a recent tree encroachment, while for the other this process has not yet occurred. Observed and modeled heat fluxes are used to inform a comprehensive physical model to study the impact of vegetation encroachment process on the permafrost dynamics.

Comparison of oilseed yields: a preliminary review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duke, J.A.; Bagby, M.O.

It was assumed that for most oilseed crops, 90% of the oil yield might be considered as profit. To compare oil seeds, pertinent portions of the yield and energy paragraphs from a summary published by Dr. Duke for DOE Grant No. 59-2246-1-6-054-0 with Dr. Bagby as ADODR were reproduced. The seed yields ranged from 200 to 14,000 kg/ha, the low one too low to consider and the high one suspiciously high. The yield of 14,000 kg oil per hectare is equivalent to more than 30 barrels of oil per hectare. The energy species included ambrette, tung-oil tree, cashew, wood-oil tree,more » mu-oil tree, peanut, mustard greens; rape, colza; black mustard, turnip, safflower, colocynth, coconut, crambe, African oil palm, soybean, cotton, sunflower, Eastern black walnut, Engligh walnut, meadow foam, flax, macadamia nuts, opium poppy, perilla, almond, castorbean, Chinese tallow tree, sesame, jojoba, yellow mustard, stokes' aster, and Zanzibar oilvine. 1 table. (DP)« less

Molecular performance of commercial MTG variety oil palm based on RAPD markers

NASA Astrophysics Data System (ADS)

Putri, L. A. P.; Setyo, I. E.; Basyuni, M.; Bayu, E. S.; Setiado, H.; Reynaldi, N. F.; Laia, H.; Puteri, S. A. K.; Arifiyanto, D.; Syahputra, I.

2018-02-01

The oil palm, an economically important tree in Indonesia, has been one of the world’s major sources of edible oil and a significant precursor of biodiesel fuel. This research is conducted by taking individual tree sample of commercial MTG variety germplasm oil palm one years old. The purpose of this research is to analyse molecular performance of some oil palm MTG variety based on RAPD markers. In this experiment, the DNA profile diversity was assessed using markers of oil palm’s random RAPD markers (OPD-20, SB-19, OPM-01 and OPO-11). A total of 15 trees commercial MTG oil palm variety were used for analysis. The results of the experiment indicated out of 4 RAPD markers (OPD-20, SB-19, OPM-01 and OPO-11) showed polymorphic of PCR product. These preliminary results demonstrated RAPD marker can be used to evaluate genetic relatedness among trees of commercial MTG variety oil palm and detecting either genetic variants or mislabelled.

Some climatic indicators in the period A.D. 1200-1400 in New Mexico

USGS Publications Warehouse

Leopold, Luna Bergere; Leopold, Estella B.; Wendorf, F.

1963-01-01

Three centuries before Columbus landed in America, the alluvial valleys of the south-western United States teemed with activity. The indigenous peoples had been building for 300 years a culture centred around community life based on flood-water farming and on hunting. A large number of pueblos had developed on sites earlier occupied by pit-house people. Community organization had brought advances in the ceramic and decorative arts, and changes in these artistic activities were sufficiently rapid that accurate chronologies have become available through the work of archaeologists during the twentieth century. These chronologies were at first unrelated to absolute dates, but the excavations of the 1920s at Chaco Canyon (New Mexico) provided the materials through which absolute dates could be established. This was accomplished by matching the changes in tree-ring width backward in time from living trees through successively older samples. Trees overlapping in age provided, by unique successions of distinctive tree-ring widths, a calendar by which individual logs could be dated. Beams found in the excavations at Chaco Canyon gave the first material by which the cultural developments culminating about A.D. 1300 could be dated.As a result of the time sequence provided by the tree-ring calendar, the dates within which different pottery types were developed could be accurately established. The dates of pottery types have been checked at a sufficiently large number of sites throughout the south-western United States that absolute dating of a large number of distinctive patterns can be considered unassailable. The sequence of tree-ring widths gives some climatic indications of great interest both to archaeologists and to climatologists. A relatively large number of logs spanning the period from A.D. 1200 to 1300 and, in particular, the years between 1276 and 1299, indicate that this period was generally characterized by smaller tree-ring widths than in the centuries immediately before and after. As a first approximation, the hundred years of narrow tree-ring widths were interpreted as a time of relative aridity, and have been referred to as the “Pueblo Drought”. More recent studies of tree-ring widths using sophisticated statistical techniques have thrown some doubts on any direct correlation of tree-ring widths with rainfall. Such doubts have been put forward before by Glock (1955) whose studies have been aimed at separating the various effects of seasonal occurrence of precipitation, the amount falling in various seasons, and other climatic factors in their relative influence on tree-ring widths. At present, then, tree-ring widths may be considered more satisfactory for reading chronology than for reading climate. It is this concern about direct correlation of tree-ring width with climate that led to initiation of the present study. This work is a preliminary attempt to obtain independent evidence from pollen concerning the probable nature of the vegetation and thus the climate in a period known to be characterized by narrow tree rings.

Estimating the Longwave Radiation Underneath the Forest Canopy in Snow-dominated Setting

NASA Astrophysics Data System (ADS)

Zhou, Y.; Kumar, M.; Link, T. E.

2017-12-01

Forest canopies alter incoming longwave radiation at the land surface, thus influencing snow cover energetics. The snow surface receives longwave radiation from the sky as well as from surrounding vegetation. The longwave radiation from trees is determined by its skin temperature, which shows significant heterogeneity depending on its position and morphometric attributes. Here our goal is to derive an effective tree temperature that can be used to estimate the longwave radiation received by the land surface pixel. To this end, we implement these three steps: 1) derive a relation between tree trunk surface temperature and the incident longwave radiation, shortwave radiation, and air temperature; 2) develop an inverse model to calculate the effective temperature by establishing a relationship between the effective temperature and the actual tree temperature; and 3) estimate the effective temperature using widely measured variables, such as solar radiation and forest density. Data used to derive aforementioned relations were obtained at the University of Idaho Experimental Forest, in northern Idaho. Tree skin temperature, incoming longwave radiation, solar radiation received by the tree surface, and air temperature were measured at an isolated tree and a tree within a homogeneous forest stand. Longwave radiation received by the land surface and the sky view factors were also measured at the same two locations. The calculated effective temperature was then compared with the measured tree trunk surface temperature. Additional longwave radiation measurements with pyrgeometer arrays were conducted under forests with different densities to evaluate the relationship between effective temperature and forest density. Our preliminary results show that when exposed to direct shortwave radiation, the tree surface temperature shows a significant difference from the air temperature. Under cloudy or shaded conditions, the tree surface temperature closely follows the air temperature. The effective tree temperature follows the air temperature in a dense forest stand, although it is significantly larger than the air temperature near the isolated tree. This discrepancy motivates us to explore ways to represent the effective tree temperature for stands with different densities.

Size and age of the non structural carbohydrate pool in boreal trees

NASA Astrophysics Data System (ADS)

Czimczik, C. I.; Trumbore, S.

2005-12-01

Autotrophic respiration of trees is supposed to be closely linked to CO2 uptake by photosynthesis on a time scale of days. However, several studies have indicated that roots of boreal trees do not respired carbon (C) with a radiocarbon signature Δ14C similar to that of CO2 in the atmosphere, but C that is 3-4 years old. Also, estimates of gross primary productivity obtained by eddy covariance flux measurements do often not correlate with tree ring width (growth). Both these findings point to the presences of a large non-structural C (NSC) pool within the tree, mainly sugars and starches. The concentration of NSC in tree tissue is considered a measure of C shortage or surplus for growth. Studies indicate that the NSC pool in trees is usually large and relatively constant throughout the year, not affected by e.g. leaf flushing. While estimates of the size of the NSC pool are available for a number of trees from various ecosystems, estimated of its turnover time are lacking. We tested if our finding that boreal trees respire 3-4 year old C is an artifact resulting from the depletion of the NSC pool in excised roots over time. We incubated roots with a diameter of 2-4 mm while they were still attached to the tree, and excised roots after 3 hours, and 1 to 4 days. We sampled CO2 for Δ14C analysis of intact roots, freshly excised roots, and after 1 and 3 days. To obtain an estimate of the NSC pool size and its turnover time in roots of various diameter, we excised and incubated roots of 3 diameters: root hairs with mycorrhizal fungi, 2-4 mm, and 1-2 cm. We followed their respiration over the course of one full day. We will also compare the Δ14C of respired CO2 of freshly root hairs to that of the NSC in the roots. To obtain an estimate of the size and turnover of the whole tree NSC pool, we will measure the Δ14C of NSC in wood. Preliminary results indicate that CO2 fluxes were not correlated to temperature or the initial CO2 concentration in the chamber. While CO2 fluxes of medium and coarse roots remained relatively constant over 4 days, the respiration rates of root hairs declined sharply within the first 24 hours.

Study on the Adsorption Capacities for Airborne Particulates of Landscape Plants in Different Polluted Regions in Beijing (China)

PubMed Central

Zhang, Wei-Kang; Wang, Bing; Niu, Xiang

2015-01-01

Urban landscape plants are an important component of the urban ecosystem, playing a significant role in the adsorption of airborne particulates and air purification. In this study, six common landscape plants in Beijing were chosen as research subjects, and the adsorption capacities for each different plant leaf and the effects of the leaf structures for the adsorption capacities for particulates were determined. Preliminary results show that needle-leaved tree species adsorbed more airborne particulates than broad-leaved tree species for the same leaf area. Pinus tabuliformis exhibits the highest adsorption capacity, at 3.89 ± 0.026 μg·cm−2, almost two times as much as that of Populus tomentosa (2.00 ± 0.118 μg·cm−2). The adsorption capacities for PM10 of the same tree species leaves, in different polluted regions had significant differences, and the adsorption capacities for PM10 of the tree species leaf beside the Fifth Ring Road were higher than those of the tree species leaves in the Botanical Garden, although the adsorption capacities for PM2.5 of the same tree species in different polluted regions had no significant differences. By determining the soluble ion concentrations of the airborne particulates in two regions, it is suggested that the soluble ion concentrations of PM10 in the atmosphere in the Botanical Garden and beside the Fifth Ring Road have significant differences, while those of PM2.5 in the atmosphere had no significant differences. In different polluted regions there are significant adaptive changes to the leaf structures, and when compared with slightly polluted region, in the seriously polluted region the epidermis cells of the plant leaves shrinked, the surface textures of the leaves became rougher, and the stomas’ frequency and the pubescence length increased. Even though the plant leaves exposed to the seriously polluted region changed significantly, these plants can still grow normally and healthily. PMID:26287227

USING STABLE ISOTOPES TO IDENTIFY SOURCES OF ORGANIC AND INORGANIC PHOSPHOROUS AND NITROGEN IN THE TWIN CITIES WATERSHED

EPA Science Inventory

It is expected that human activity and terrestrial input (i.e., leaf litter, throughfall) will be the dominant sources of N and P, but that sources will vary greatly at small spatial scales. Preliminary work suggests that tree species cover, soil characteristics and snowmel...

Comparing partial cutttng practices in central Appalachian hardwoods

Treesearch

G.W. Miller; H.C. Smith

1991-01-01

Variations of diameter-limit and perhaps single-tree selection harvesting are used to regenerate and manage central Appalachian hardwood sawtimber stands. In practice, these methods differ in terms of cut rules, control of stand structure, and cultural treatment of immature stems. Preliminary information is provided to compare the effect of two differing harvest...

Pulpwood Harvesting: A Curriculum Guide. Preliminary Draft 1973.

ERIC Educational Resources Information Center

Mercer, R. J., Ed.

A brief introductory section contains the rationale for the course, the curriculum framework, a curriculum paradigm which indicates the approximate time ranges for each section, and notes on use of the guide. The guide itself is divided into units and subunits covering the following areas: Orientation to Pulpwood Harvesting; Tree Identification;…

Preliminary test of booby-trapping for control of two cerambycids

Treesearch

Jimmy R. Galford

1979-01-01

Small aluminum "boats" containing cotton saturated with lindane were glued to elytra of female red oak borers and locust borers and the beetles released into cages or onto trees. Males attempting to mate with booby-trapped females contacted the insecticide and died. However, females also became contaminated in mating attempts and soon died.

Plant-parasitic nematodes associated with olive trees in Al-Jouf region, north Saudi Arabia

USDA-ARS?s Scientific Manuscript database

A preliminary survey of plant-parasitic nematodes associated with olive was performed in Al-Jouf region, north Saudi Arabia. Olive is a newly introduced crop in this region, and is cultivated in the agricultural enterprises of some of the biggest Saudi agricultural companies. Seedlings are mostly im...

Toward the definition of a carbon budget model: seasonal variation and temperature effect on respiration rate of vegetative and reproductive organs of pistachio trees (Pistacia vera).

PubMed

Marra, Francesco P; Barone, Ettore; La Mantia, Michele; Caruso, Tiziano

2009-09-01

This study, as a preliminary step toward the definition of a carbon budget model for pistachio trees (Pistacia vera L.), aimed at estimating and evaluating the dynamics of respiration of vegetative and reproductive organs of pistachio tree. Trials were performed in 2005 in a commercial orchard located in Sicily (370 m a.s.l.) on five bearing 20-year-old pistachio trees of cv. Bianca grafted onto Pistachio terebinthus L. Growth analyses and respiration measurements were done on vegetative (leaf) and reproductive (infructescence) organs during the entire growing season (April-September) at biweekly intervals. Results suggested that the respiration rates of pistachio reproductive and vegetative organs were related to their developmental stage. Both for leaf and for infructescence, the highest values were observed during the earlier stages of growth corresponding to the phases of most intense organ growth. The sensitivity of respiration activity to temperature changes, measured by Q(10), showed an increase throughout the transition from immature to mature leaves, as well as during fruit development. The data collected were also used to estimate the seasonal carbon loss by respiration activity for a single leaf and a single infructescence. The amount of carbon lost by respiration was affected by short-term temperature patterns, organ developmental stage and tissue function.

Leaf and whole-tree water use relations of Australian rainforest species

NASA Astrophysics Data System (ADS)

Ishida, Yoko; Laurance, Susan; Liddell, Michael; Lloyd, Jonathan

2015-04-01

Climate change induces drought events and may therefore cause significant impact on tropical rainforests, where most plants are reliant on high water availability - potentially affecting the distribution, composition and abundance of plant species. Using an experimental approach, we are studying the effects of a simulated drought on lowland rainforest plants at the Daintree Rainforest Observatory (DRO), in tropical northern Australia. Before to build up the rainout infrastructure, we installed sap flow meters (HRM) on 62 rainforest trees. Eight tree species were selected with diverse ecological strategies including wood density values ranging from 0.34 to 0.88 g/cm3 and could be replicated within a 1ha plot: Alstonia scholaris (Apocynaceae), Argyrondendron peralatum (Malvaceae), Elaeocarpus angustifolius (Elaeocarpaceae), Endiandra microneura (Lauraceae), Myristica globosa (Myristicaceae), Syzygium graveolens (Myrtaceae), Normanbya normanbyi (Arecaceae), and Castanospermum australe (Fabaceae). Our preliminary results from sap flow data obtained from October 2013 to December of 2014 showed differences in the amount of water used by our trees varied in response to species, size and climate. For example Syzygium graveolens has used a maximum of 60 litres/day while Argyrondendrum peralatum used 13 litres/day. Other potential causes for differential water-use between species and the implications of our research will be discussed. We will continue to monitor sap flow during the rainfall exclusion (2014 to 2016) to determine the effects of plant physiological traits on water use strategies.

Dendrochronology and lakes: using tree-rings of alder to reconstruct lake levels

NASA Astrophysics Data System (ADS)

van der Maaten, Ernst; Buras, Allan; Scharnweber, Tobias; Simard, Sonia; Kaiser, Knut; Lorenz, Sebastian; van der Maaten-Theunissen, Marieke; Wilmking, Martin

2014-05-01

Climate change is considered a major threat for ecosystems around the world. Assessing its effects is challenging, amongst others, as we are unsure how ecosystems may respond to climate conditions they were not exposed to before. However, increased insight may be obtained by analyzing responses of ecosystems to past climate variability. In this respect, lake ecosystems appear as valuable sentinels, because they provide direct and indirect indicators of change through effects of climate. Lake-level fluctuations of closed catchments, for example, reflect a dynamic water balance, provide detailed insight in past moisture variations, and thereby allow for assessments of effects of anticipated climate change. Up to now, lake-level data are mostly obtained from gauging records and reconstructions from sediments and landforms. However, these records are in many cases only available over relatively short time periods, and, since geoscientific work is highly demanding, lake-level reconstructions are lacking for many regions. Here, we present and discuss an alternative method to reconstruct lake levels, which is based on tree-ring data of black alder (Alnus glutinosa L.). This tree species tolerates permanently waterlogged and temporally flooded conditions (i.e. riparian vegetation), and is often found along lakeshores. As the yearly growth of trees varies depending upon the experienced environmental conditions, annual rings of black alder from lakeshore vegetation likely capture information on variations in water table, and may therefore be used to reconstruct lake levels. Although alder is a relatively short-lived tree species, the frequent use of its' decay-resistant wood in foundations of historical buildings offers the possibility of extending living tree-chronologies back in time for several centuries. In this study, the potential to reconstruct lake-level fluctuations from tree-ring chronologies of black alder is explored for three lake ecosystems in the Mecklenburg Lake District, northeastern Germany. Tree-ring data were collected from black alder forests surrounding the lakes 'Tiefer See', 'Drewitzer See' and 'Großer Fürstenseer See'. At all research sites, increment cores were extracted from at least 15 trees (2 cores per tree) using an increment borer. In the tree-ring lab DendroGreif, these cores were prepared and annual tree-ring widths were measured. Thereafter, site-specific tree-ring chronologies were built using established detrending and standardization procedures. Preliminary results show that the growth of alder reacts upon water level fluctuations. We visually and statistically compare the developed tree-ring chronologies with historical lake-level records, and retrospectively model lake levels. Findings will be presented while critically reflecting upon the quality of these reconstructions.

Some South African Rubiaceae Tree Leaf Extracts Have Antimycobacterial Activity Against Pathogenic and Non-pathogenic Mycobacterium Species.

PubMed

Aro, Abimbola O; Dzoyem, Jean P; Hlokwe, Tiny M; Madoroba, Evelyn; Eloff, Jacobus N; McGaw, Lyndy J

2015-07-01

Tuberculosis (TB) caused by Mycobacterium tuberculosis remains an ongoing threat to human health. Many plant species contain antimycobacterial compounds, which may serve as template molecules for new anti-TB drugs. The Rubiaceae family is the largest family of trees in southern Africa, and preliminary evidence revealed antimycobacterial activity in several species of the genus, motivating further studies. Leaf extracts of 15 tree species from the Rubiaceae family were screened for antimycobacterial activity against pathogenic M. tuberculosis and non-pathogenic Mycobacterium smegmatis, Mycobacterium aurum and Mycobacterium bovis BCG (Bacillus Calmette-Guérin) using a twofold serial microdilution assay. Cytotoxicity was determined using a tetrazolium-based colorimetric assay against C3A liver cells and Vero kidney cells. Minimum inhibitory concentration values as low as 0.04 mg/mL against M. smegmatis and M. tuberculosis were recorded. Activity against M. aurum was the best predictor of activity against pathogenic M. tuberculosis (correlation coefficient = 0.9). Bioautography indicated at least 40 different antimycobacterial compounds in the extracts. Cytotoxicity of the extracts varied, and Oxyanthus speciosus had the most promising selectivity index values. Copyright © 2015 John Wiley & Sons, Ltd.

Mating system and early viability resistance to habitat fragmentation in a bird-pollinated eucalypt

PubMed Central

Breed, M F; Ottewell, K M; Gardner, M G; Marklund, M H K; Stead, M G; Harris, J B C; Lowe, A J

2015-01-01

Habitat fragmentation has been shown to disrupt ecosystem processes such as plant-pollinator mutualisms. Consequently, mating patterns in remnant tree populations are expected to shift towards increased inbreeding and reduced pollen diversity, with fitness consequences for future generations. However, mating patterns and phenotypic assessments of open-pollinated progeny have rarely been combined in a single study. Here, we collected seeds from 37 Eucalyptus incrassata trees from contrasting stand densities following recent clearance in a single South Australian population (intact woodland=12.6 trees ha−1; isolated pasture=1.7 trees ha−1; population area=10 km2). 649 progeny from these trees were genotyped at eight microsatellite loci. We estimated genetic diversity, spatial genetic structure, indirect contemporary pollen flow and mating patterns for adults older than the clearance events and open-pollinated progeny sired post-clearance. A proxy of early stage progeny viability was assessed in a common garden experiment. Density had no impact on mating patterns, adult and progeny genetic diversity or progeny growth, but was associated with increased mean pollen dispersal. Weak spatial genetic structure among adults suggests high historical gene flow. We observed preliminary evidence for inbreeding depression related to stress caused by fungal infection, but which was not associated with density. Higher observed heterozygosities in adults compared with progeny may relate to weak selection on progeny and lifetime-accumulated mortality of inbred adults. E. incrassata appears to be resistant to the negative mating pattern and fitness changes expected within fragmented landscapes. This pattern is likely explained by strong outcrossing and regular long-distance pollen flow. PMID:23188172

Developing an Event-Tree Probabilistic Tsunami Inundation Model for NE Atlantic Coasts: Application to a Case Study

NASA Astrophysics Data System (ADS)

Omira, R.; Matias, L.; Baptista, M. A.

2016-12-01

This study constitutes a preliminary assessment of probabilistic tsunami inundation in the NE Atlantic region. We developed an event-tree approach to calculate the likelihood of tsunami flood occurrence and exceedance of a specific near-shore wave height for a given exposure time. Only tsunamis of tectonic origin are considered here, taking into account local, regional, and far-field sources. The approach used here consists of an event-tree method that gathers probability models for seismic sources, tsunami numerical modeling, and statistical methods. It also includes a treatment of aleatoric uncertainties related to source location and tidal stage. Epistemic uncertainties are not addressed in this study. The methodology is applied to the coastal test-site of Sines located in the NE Atlantic coast of Portugal. We derive probabilistic high-resolution maximum wave amplitudes and flood distributions for the study test-site considering 100- and 500-year exposure times. We find that the probability that maximum wave amplitude exceeds 1 m somewhere along the Sines coasts reaches about 60 % for an exposure time of 100 years and is up to 97 % for an exposure time of 500 years. The probability of inundation occurrence (flow depth >0 m) varies between 10 % and 57 %, and from 20 % up to 95 % for 100- and 500-year exposure times, respectively. No validation has been performed here with historical tsunamis. This paper illustrates a methodology through a case study, which is not an operational assessment.

The importance of traditional orchards for breeding birds: The preliminary study on Central European example

NASA Astrophysics Data System (ADS)

Kajtoch, Łukasz

2017-01-01

Orchards are parts of agriculture and apart from their economic role they may preserve biodiversity in highly transformed farmlands. An increasing intensity of orchards management is known to be threat for some species, especially pollinators and birds. On the other hand, the biodiversity of abandoned orchards was hardly investigated. Here, I present a survey of orchards in Poland to estimate how bird's diversities differ in response to the intensity of orchards management. In 2014, 66 orchards of three types - abandoned, extensively and intensively managed - were investigated. Bird species' richness and abundance were found to be highest in abandoned orchards but overall bird diversity and species composition in abandoned did not differ from these found in extensively managed orchards. In abandoned and extensively managed orchards, hollow-dwellers and insectivores (with some rare old-forest associated species) dominated, whereas in intensively managed orchards the most diverse were ground-dwellers. Among the several selected environmental features, the highest impact on bird diversity was related to the tree diversity, abundance of older trees, presence of multilayer understory and heterogeneous surrounding. The preliminary study point that traditional orchards could play a important role for wood-dwelling species in agriculture and because of that the removal or replacement of all traditional orchards by intensively managed orchards should be avoided and needs of orchard protection should be implemented into Agri-Environmental Schemes/High Nature Value farming systems and possibly also into habitat directive of EU. Unfortunately, the number of abandoned and extensively managed orchards is declining from agricultural landscapes, and traditional orchards are replaced by conventional fruit plantations.

Preliminary Classification of Novel Hemorrhagic Fever-Causing Viruses Using Sequence-Based PAirwise Sequence Comparison (PASC) Analysis.

PubMed

Bào, Yīmíng; Kuhn, Jens H

2018-01-01

During the last decade, genome sequence-based classification of viruses has become increasingly prominent. Viruses can be even classified based on coding-complete genome sequence data alone. Nevertheless, classification remains arduous as experts are required to establish phylogenetic trees to depict the evolutionary relationships of such sequences for preliminary taxonomic placement. Pairwise sequence comparison (PASC) of genomes is one of several novel methods for establishing relationships among viruses. This method, provided by the US National Center for Biotechnology Information as an open-access tool, circumvents phylogenetics, and yet PASC results are often in agreement with those of phylogenetic analyses. Computationally inexpensive, PASC can be easily performed by non-taxonomists. Here we describe how to use the PASC tool for the preliminary classification of novel viral hemorrhagic fever-causing viruses.

[Herbal medicine in womens' life cycle].

PubMed

Ben-Arye, Eran; Oren, Amnon; Ben-Arie, Alon

2006-10-01

Women use herbs and other traditional and complementary modalities to treat various ailments throughout their life circle. This article reviewed 19 randomized controlled trials, which studied efficacy and safety of various herbs in the treatment of premenstrual syndrome (PMS), nausea and vomiting in the first trimester of pregnancy and menopausal hot flushes. Preliminary data support the efficacy of Chaste tree fruit (Vitex agnus) in the treatment of PMS, Ginger (Zingiber officinale) in the treatment of hyperemesis gravidarum and (Cimicifuga racemosa) in the treatment of menopausal hot flushes. Additional and more rigorous studies are warranted in order to support the efficacy and safety of these herbal remedies.

Characterization and transferability of microsatellite markers developed for Carpinus betulus (Betulaceae)1

PubMed Central

Prinz, Kathleen; Finkeldey, Reiner

2015-01-01

Premise of the study: Carpinus betulus (Betulaceae) is an octoploid, ecologically important, common tree species in European woodlands. We established 11 nuclear microsatellite loci allowing for detailed analyses of genetic diversity and structure. Methods and Results: A microsatellite-enriched library was used to develop primers for 11 microsatellite loci that revealed high allele numbers and genetic diversity in a preliminary study. Conclusions: All of the loci developed here are informative for C. betulus. In addition, the loci are transferable to several species within the genus, and almost all loci cross-amplified in species of different genera of the Betulaceae. PMID:26504678

Blood oxygen level dependent magnetic resonance imaging for detecting pathological patterns in lupus nephritis patients: a preliminary study using a decision tree model.

PubMed

Shi, Huilan; Jia, Junya; Li, Dong; Wei, Li; Shang, Wenya; Zheng, Zhenfeng

2018-02-09

Precise renal histopathological diagnosis will guide therapy strategy in patients with lupus nephritis. Blood oxygen level dependent (BOLD) magnetic resonance imaging (MRI) has been applicable noninvasive technique in renal disease. This current study was performed to explore whether BOLD MRI could contribute to diagnose renal pathological pattern. Adult patients with lupus nephritis renal pathological diagnosis were recruited for this study. Renal biopsy tissues were assessed based on the lupus nephritis ISN/RPS 2003 classification. The Blood oxygen level dependent magnetic resonance imaging (BOLD-MRI) was used to obtain functional magnetic resonance parameter, R2* values. Several functions of R2* values were calculated and used to construct algorithmic models for renal pathological patterns. In addition, the algorithmic models were compared as to their diagnostic capability. Both Histopathology and BOLD MRI were used to examine a total of twelve patients. Renal pathological patterns included five classes III (including 3 as class III + V) and seven classes IV (including 4 as class IV + V). Three algorithmic models, including decision tree, line discriminant, and logistic regression, were constructed to distinguish the renal pathological pattern of class III and class IV. The sensitivity of the decision tree model was better than that of the line discriminant model (71.87% vs 59.48%, P < 0.001) and inferior to that of the Logistic regression model (71.87% vs 78.71%, P < 0.001). The specificity of decision tree model was equivalent to that of the line discriminant model (63.87% vs 63.73%, P = 0.939) and higher than that of the logistic regression model (63.87% vs 38.0%, P < 0.001). The Area under the ROC curve (AUROCC) of the decision tree model was greater than that of the line discriminant model (0.765 vs 0.629, P < 0.001) and logistic regression model (0.765 vs 0.662, P < 0.001). BOLD MRI is a useful non-invasive imaging technique for the evaluation of lupus nephritis. Decision tree models constructed using functions of R2* values may facilitate the prediction of renal pathological patterns.

Survey to evaluate escape of Eucalyptus spp. seedlings from plantations in southeastern USA

Treesearch

Mac A. Callaham; John A. Stanturf; William J. Hammond; Donald L. Rockwood; Evelyn S. Wenk; Joseph J. O’Brien

2013-01-01

Interest in biomass-based energy in the southeastern Unites States has led to increased need for fast-growing tree species. Several Eucalyptus species exhibit characteristics that make them attractive in the bioenergy context. However, some of these also possess traits that suggest they could become invasive. To make a preliminary assessment of the...

Vegetative conditions and management options in even-age stands on the Monongahela National Forest

Treesearch

Gary W. Miller; James N. Kochenderfer; James Knibbs; John E. Baumgras

2001-01-01

In 1998, personnel with the Northeastern Research Station and the Monongahela National Forest initiated a comprehensive survey of even-age stands that regenerated between 1964 and 1990. Preliminary results indicate that clearcutting was successful in regenerating these young stands with a variety of woody and herbaceous plant species. Early cleanings using crop-tree...

Apical bud toughness tests and tree sway movements to examine crown abrasion: preliminary results

Treesearch

Tyler Brannon; Wayne Clatterbuck

2012-01-01

Apical bud toughness differences were examined for several species to determine if crown abrasion affects shoot growth of determinate and indeterminate species during stand development. Determinate buds will set and harden after initial shoot elongation in the spring, while the indeterminate shoots form leaves from the apical meristem continuously based on the...

Differences in secondary metabolites in leaves from orange trees (Citrus sinensis L.) affected with greening disease (Huanglongbing) (HLB)

USDA-ARS?s Scientific Manuscript database

Preliminary analyses by HPLC-MS of methanolic extracts of two sets of orange leaves that are symptomatic of the Greening Disease (HLB) have shown several consistent differences. The main flavonoids in symptomatic and nonsymptomatic leaves were monitored in the HPLC chromatograms at 330 nm, and signi...

Development of reproduction in Allegheny hardwood stands after herbicide-clearcuts and herbicide-shelterwood cuts

Treesearch

Stephen B. Horsley

1982-01-01

Dense ground covers of fern and grass interfere with the regeneration of Allegheny hardwoods. An herbicide containing N-phosphonomethyl glycine controls the fern and grass, but also kills advance reproduction of desirable tree species. Preliminary results of an experiment comparing regeneration 3 years after herbicide-clearcuts and herbicide-shelterwood seed cuts...

Above ground biomass and tree species richness estimation with airborne lidar in tropical Ghana forests

NASA Astrophysics Data System (ADS)

Vaglio Laurin, Gaia; Puletti, Nicola; Chen, Qi; Corona, Piermaria; Papale, Dario; Valentini, Riccardo

2016-10-01

Estimates of forest aboveground biomass are fundamental for carbon monitoring and accounting; delivering information at very high spatial resolution is especially valuable for local management, conservation and selective logging purposes. In tropical areas, hosting large biomass and biodiversity resources which are often threatened by unsustainable anthropogenic pressures, frequent forest resources monitoring is needed. Lidar is a powerful tool to estimate aboveground biomass at fine resolution; however its application in tropical forests has been limited, with high variability in the accuracy of results. Lidar pulses scan the forest vertical profile, and can provide structure information which is also linked to biodiversity. In the last decade the remote sensing of biodiversity has received great attention, but few studies focused on the use of lidar for assessing tree species richness in tropical forests. This research aims at estimating aboveground biomass and tree species richness using discrete return airborne lidar in Ghana forests. We tested an advanced statistical technique, Multivariate Adaptive Regression Splines (MARS), which does not require assumptions on data distribution or on the relationships between variables, being suitable for studying ecological variables. We compared the MARS regression results with those obtained by multilinear regression and found that both algorithms were effective, but MARS provided higher accuracy either for biomass (R2 = 0.72) and species richness (R2 = 0.64). We also noted strong correlation between biodiversity and biomass field values. Even if the forest areas under analysis are limited in extent and represent peculiar ecosystems, the preliminary indications produced by our study suggest that instrument such as lidar, specifically useful for pinpointing forest structure, can also be exploited as a support for tree species richness assessment.

Quantification and identification of lightning damage in tropical forests.

PubMed

Yanoviak, Stephen P; Gora, Evan M; Burchfield, Jeffrey M; Bitzer, Phillip M; Detto, Matteo

2017-07-01

Accurate estimates of tree mortality are essential for the development of mechanistic forest dynamics models, and for estimating carbon storage and cycling. However, identifying agents of tree mortality is difficult and imprecise. Although lightning kills thousands of trees each year and is an important agent of mortality in some forests, the frequency and distribution of lightning-caused tree death remain unknown for most forests. Moreover, because all evidence regarding the effects of lightning on trees is necessarily anecdotal and post hoc, rigorous tests of hypotheses regarding the ecological effects of lightning are impossible. We developed a combined electronic sensor/camera-based system for the location and characterization of lightning strikes to the forest canopy in near real time and tested the system in the forest of Barro Colorado Island, Panama. Cameras mounted on towers provided continuous video recordings of the forest canopy that were analyzed to determine the locations of lightning strikes. We used a preliminary version of this system to record and locate 18 lightning strikes to the forest over a 3-year period. Data from field surveys of known lightning strike locations (obtained from the camera system) enabled us to develop a protocol for reliable, ground-based identification of suspected lightning damage to tropical trees. In all cases, lightning damage was relatively inconspicuous; it would have been overlooked by ground-based observers having no knowledge of the event. We identified three types of evidence that can be used to consistently identify lightning strike damage in tropical forests: (1) localized and directionally biased branch mortality associated with flashover among tree and sapling crowns, (2) mortality of lianas or saplings near lianas, and (3) scorched or wilting epiphytic and hemiepiphytic plants. The longitudinal trunk scars that are typical of lightning-damaged temperate trees were never observed in this study. Given the prevalence of communications towers worldwide, the lightning detection system described here could be implemented in diverse forest types. Data from multiple systems would provide an outstanding opportunity for comparative research on the ecological effects of lightning. Such comparative data are increasingly important given expected increases in lightning frequency with climatic change.

An Intercomparison of Large-Extent Tree Canopy Cover Geospatial Datasets

NASA Astrophysics Data System (ADS)

Bender, S.; Liknes, G.; Ruefenacht, B.; Reynolds, J.; Miller, W. P.

2017-12-01

As a member of the Multi-Resolution Land Characteristics Consortium (MRLC), the U.S. Forest Service (USFS) is responsible for producing and maintaining the tree canopy cover (TCC) component of the National Land Cover Database (NLCD). The NLCD-TCC data are available for the conterminous United States (CONUS), coastal Alaska, Hawai'i, Puerto Rico, and the U.S. Virgin Islands. The most recent official version of the NLCD-TCC data is based primarily on reference data from 2010-2011 and is part of the multi-component 2011 version of the NLCD. NLCD data are updated on a five-year cycle. The USFS is currently producing the next official version (2016) of the NLCD-TCC data for the United States, and it will be made publicly-available in early 2018. In this presentation, we describe the model inputs, modeling methods, and tools used to produce the 30-m NLCD-TCC data. Several tree cover datasets at 30-m, as well as datasets at finer resolution, have become available in recent years due to advancements in earth observation data and their availability, computing, and sensors. We compare multiple tree cover datasets that have similar resolution to the NLCD-TCC data. We also aggregate the tree class from fine-resolution land cover datasets to a percent canopy value on a 30-m pixel, in order to compare the fine-resolution datasets to the datasets created directly from 30-m Landsat data. The extent of the tree canopy cover datasets included in the study ranges from global and national to the state level. Preliminary investigation of multiple tree cover datasets over the CONUS indicates a high amount of spatial variability. For example, in a comparison of the NLCD-TCC and the Global Land Cover Facility's Landsat Tree Cover Continuous Fields (2010) data by MRLC mapping zones, the zone-level root mean-square deviation ranges from 2% to 39% (mean=17%, median=15%). The analysis outcomes are expected to inform USFS decisions with regard to the next cycle (2021) of NLCD-TCC production.

Identification of trail pheromone of larva of eastern tent caterpillarMalacosoma americanum (Lepidoptera: Lasiocampidae).

PubMed

Crump, D; Silverstein, R M; Williams, H J; Fitzgerald, T D

1987-03-01

Previous studies have shown that larvae of the eastern tent caterpillar (Malacosoma americanum F.) mark trails, leading from their tent to feeding sites on host trees, with a pheromone secreted from the posterior tip of the abdominal sternum. 5β-Cholestane-3,24-dione (1) has been identified as an active component of the trail. The larvae have a threshold sensitivity to the pheromone of 10(-11) g/mm of trail. Several related compounds elicit the trail-following response. Two other species of tent caterpillars also responded positively to the pheromone in preliminary laboratory tests.

Cuyahoga River, Ohio Restoration Study. Third Interim Preliminary Feasibility Report on Erosion and Sedimentation. Volume II. Appendices A through H.

DTIC Science & Technology

1981-04-01

land occurs in undeveloped areas of the parks systems* Woodland. Land that is primarily used to produce adapted wood crops and to provide tree cover for...Filling & Dumping Area 4 26-2 Contruction Area 30 26-3 Construction Area 2 27-1 Construction Area 4 27-2 Construction Area 40 27-3 Construction Area 5 A...or white pine. The cost of this BMP is approximately $150 per acre. C-61 Wood laiid l iprovteintit. Thh; IIP il volves selectIve thinning of maple

Long-term boreal forest dynamics and disturbances: a multi-proxy approach

NASA Astrophysics Data System (ADS)

Stivrins, Normunds; Aakala, Tuomas; Kuuluvainen, Timo; Pasanen, Leena; Ilvonen, Liisa; Holmström, Lasse; Seppä, Heikki

2017-04-01

The boreal forest provides a variety of ecosystem services that are threatened under the ongoing climate warming. Along with the climate, there are several factors (fire, human-impact, pathogens), which influence boreal forest dynamics. Combination of short and long-term studies allowing complex assessment of forest response to natural abiotic and biotic stress factors is necessary for sustainable management of the boreal forest now and in the future. The ongoing EBOR (Ecological history and long-term dynamics of the boreal forest ecosystem) project integrates forest ecological and palaeoecological approaches to study boreal forest dynamics and disturbances. Using pollen, non-pollen palynomorphs, micro- and macrocharcoal, tree rings and fire scars, we analysed forest dynamics at stand-scale by sampling small forest hollows (small paludified depressions) and the surrounding forest stands in Finland and western Russia. Using charcoal data, we estimated a fire return interval of 320 years for the Russian sites, and, based on the fungi Neurospora that can grow on charred tree bark after a low-intensity fire, we were able to distinguish low- and high-intensity fire-events. In addition to the influence of fire events and/or fire regime changes, we further assessed potential relationships between tree species and herbivore presence and pathogens. As an example of such a relationship, our preliminary findings indicated a negative relationship between Picea and fungi Lasiosphaeria (caudata), which occurred during times of Picea decline.

Monitoring of environmental conditions in the Alaskan forests using ERS-1 SAR data

NASA Technical Reports Server (NTRS)

Rignot, Eric; Way, Jobea; Mcdonald, Kyle; Viereck, Leslie; Adams, Phyllis

1992-01-01

Preliminary results from an analysis of the multitemporal radar backscatter signatures of tree species acquired by European Remote Sensing Satellite (ERS-1) synthetic aperture radar (SAR) data are presented. Significant changes in radar backscatter are detected. Correlation of these differences with ground truth observations indicate that these are due to changes in soil and liquid water content as a result of freeze/thaw events. C-band observations acquired by the NASA/Jet Propulsion Laboratory Airborne SAR (JPL AIRSAR) instrument demonstrate the potential of a C-band radar instrument to monitor drought/flood events. The potential of ERS-1 for monitoring phenologic changes in the forest and for classifying tree species is less promising.

Implications of tree species for gross soil nitrate dynamics in forests

NASA Astrophysics Data System (ADS)

Björsne, Anna-Karin; Gundersen, Per; Rütting, Tobias

2017-04-01

Tree species have an impact on soil properties and nutrient cycling in forest ecosystems (Legout et al., 2016; Staelens et al., 2012). Several studies have investigated the nitrate (NO_3) dynamics in soil and compared tree species (Lovett et al., 2004; Andrianarisoa et al., 2010). However, most studies investigate only potential net nitrification (PNN), which does not show the real dynamics in the soil. In this study we have investigated gross N dynamics in a common garden experiment in Denmark. The aim of the study was to understand how gross dynamics of NO3 processes differ in soil with different tree species. Soil from plots with Norway spruce (Picea abies) and beech (Fagus sylvatica) was sampled. 15N isotopes were used to trace the activities in the soil and numerical modelling to calculate gross rates. Nitrous oxide (N_2O) losses from the incubated soils were also measured. The preliminary results show low NO3 concentration in Picea soil, while a steady nitrification and consumption of NO_3, which indicates a small NO3 pool with fast turnover. In Fagus soil the NO3 concentration is much higher, which could be explained by the low NO3 consumption rates, leading to a build-up of NO3 in the soil. The N_2O fluxes from Fagus soil are also higher, indicating larger N losses. These results show the significance of tree species and suggest what long-term effects it could have on the soil N retention. Andrianarisoa, K. S., Zeller, B., Poly, F., Siegenfuhr, H., Bienaimé, S., Ranger, J., and Dambrine, E.: Control of Nitrification by Tree Species in a Common-Garden Experiment, Ecosystems, 13, 1171-1187, 10.1007/s10021-010-9390-x, 2010. Legout, A., van der Heijden, G., Jaffrain, J., Boudot, J.-P., and Ranger, J.: Tree species effects on solution chemistry and major element fluxes: A case study in the Morvan (Breuil, France), For. Ecol. Manage., 378, 244-258, http://dx.doi.org/10.1016/j.foreco.2016.07.003, 2016. Lovett, G. M., Weathers, K. C., Arthur, M. A., and Schultz, J. C.: Nitrogen cycling in a northern hardwood forest: Do species matter?, Biogeochemistry, 67, 289-308, 10.1023/B:BIOG.0000015786.65466.f5, 2004. Staelens, J., Rütting, T., Huygens, D., de Schrijver, A., Müller, C., Verheyen, K., and Boeckx, P.: In situ gross nitrogen transformations differ between temperate deciduous and coniferous forest soils, Biogeochemistry, 108, 259-277, 10.1007/s10533-011-9598-7, 2012.

Soil nutrient bioavailability and nutrient content of pine trees (Pinus thunbergii) in areas impacted by acid deposition in Korea.

PubMed

Yang, Jae E; Lee, Wi-Young; Ok, Yong Sik; Skousen, Jeffrey

2009-10-01

Acid deposition has caused detrimental effects on tree growth near industrial areas of the world. Preliminary work has indicated that concentrations of NO(3-), SO(4)(2-), F( - ) and Al in soil solutions were 2 to 33 times higher in industrial areas compared to non-industrial areas in Korea. This study evaluated soil nutrient bioavailability and nutrient contents of red pine (Pinus thunbergii) needles in forest soils of industrial and non-industrial areas of Korea. Results confirm that forest soils of industrial areas have been acidified mainly by deposition of sulfate, resulting in increases of Al, Fe and Mn and decreases of Ca, Mg and K concentrations in soils and soil solutions. In soils of industrial areas, the molar ratios of Ca/Al and Mg/Al in forest soils were <2, which can lead to lower levels and availability of nutrients for tree growth. The Ca/Al molar ratio of Pinus thunbergii needles on non-industrial sites was 15, while that of industrial areas was 10. Magnesium concentrations in needles of Pinus thunbergii were lower in soils of industrial areas and the high levels of acid cations such as Al and Mn in these soils may have antagonized the uptake of base cations like Mg. Continued acidification can further reduce uptake of base cations by trees. Results show that Mg deficiency and high concentrations of Al and Mn in soil solution can be limiting factors for Pinus thunbergii growth in industrial areas of Korea.

Beyond Tree Throw: Wind, Water, Rock and the Mechanics of Tree-Driven Bedrock Physical Weathering

NASA Astrophysics Data System (ADS)

Marshall, J. A.; Anderson, R. S.; Dawson, T. E.; Dietrich, W. E.; Minear, J. T.

2017-12-01

Tree throw is often invoked as the dominant process in converting bedrock to soil and thus helping to build the Critical Zone (CZ). In addition, observations of tree roots lifting sidewalk slabs, occupying cracks, and prying slabs of rock from cliff faces have led to a general belief in the power of plant growth forces. These common observations have led to conceptual models with trees at the center of the soil genesis process. This is despite the observation that tree throw is rare in many forested settings, and a dearth of field measurements that quantify the magnitude of growth forces. While few trees blow down, every tree grows roots, inserting many tens of percent of its mass below ground. Yet we lack data quantifying the role of trees in both damaging bedrock and detaching it (and thus producing soil). By combing force measurements at the tree-bedrock interface with precipitation, solar radiation, wind speed, and wind-driven tree sway data we quantified the magnitude and frequency of tree-driven soil-production mechanisms from two contrasting climatic and lithologic regimes (Boulder and Eel Creek CZ Observatories). Preliminary data suggests that in settings with relatively thin soils, trees can damage and detach rock due to diurnal fluctuations, wind response and rainfall events. Surprisingly, our data suggests that forces from roots and trunks growing against bedrock are insufficient to pry rock apart or damage bedrock although much more work is needed in this area. The frequency, magnitude and style of wind-driven tree forces at the bedrock interface varies considerably from one to another species. This suggests that tree properties such as mass, elasticity, stiffness and branch structure determine whether trees respond to gusts big or small, move at the same frequency as large wind gusts, or are able to self-dampen near-ground sway response to extended wind forces. Our measurements of precipitation-driven and daily fluctuations in root pressures exerted on bedrock suggest that these fluctuations may impart a cyclic stress fatigue that over the lifetime of a tree could considerably weaken the enfolding rock (104 to 106 days depending on the species). Combined, our results suggest that wind-driven root torque and water uptake may be the primary mechanisms driving bedrock erosion and soil production in thin soil settings.

[Virtual bronchoscopy: the correlation between endoscopic simulation and bronchoscopic findings].

PubMed

Salvolini, L; Gasparini, S; Baldelli, S; Bichi Secchi, E; Amici, F

1997-11-01

We carried out a preliminary clinical validation of 3D spiral CT virtual endoscopic reconstructions of the tracheobronchial tree, by comparing virtual bronchoscopic images with actual endoscopic findings. Twenty-two patients with tracheobronchial disease suspected at preliminary clinical, cytopathological and plain chest film findings were submitted to spiral CT of the chest and bronchoscopy. CT was repeated after endobronchial therapy in 2 cases. Virtual endoscopic shaded-surface-display views of the tracheobronchial tree were reconstructed from reformatted CT data with an Advantage Navigator software. Virtual bronchoscopic images were preliminarily evaluated with a semi-quantitative quality score (excellent/good/fair/poor). The depiction of consecutive airway branches was then considered. Virtual bronchoscopies were finally submitted to double-blind comparison with actual endoscopies. Virtual image quality was considered excellent in 8 cases, good in 14 and fair in 2. Virtual exploration was stopped at the lobar bronchi in one case only; the origin of segmental bronchi was depicted in 23 cases and that of some subsegmental branches in 2 cases. Agreement between actual and virtual bronchoscopic findings was good in all cases but 3 where it was nevertheless considered satisfactory. The yield of clinically useful information differed in 8/24 cases: virtual reconstructions provided more information than bronchoscopy in 5 cases and vice versa in 3. Virtual reconstructions are limited in that the procedure is long and difficult and needing a strictly standardized threshold value not to alter virtual findings. Moreover, the reconstructed surface lacks transparency, there is the partial volume effect and the branches < or = 4 pixels phi and/or meandering ones are difficult to explore. Our preliminary data are encouraging. Segmental bronchi were depicted in nearly all cases, except for the branches involved by disease. Obstructing lesions could be bypassed in some cases, making an indication for endoscopic laser therapy. Future didactic perspectives and applications to minimally invasive or virtual reality-assisted therapy seem promising, even though actual clinical applications require further studies.

Preliminary evaluation of the potential of tree-ring cellulose content as a novel supplementary proxy in dendroclimatology

NASA Astrophysics Data System (ADS)

Ziehmer, Malin M.; Nicolussi, Kurt; Schlüchter, Christian; Leuenberger, Markus

2018-02-01

Cellulose content (CC (%)) in tree rings is usually utilised as a tool to control the quality of the α-cellulose extraction from tree rings in the preparation of stable-isotope analysis in wooden tissues. Reported amounts of CC (%) are often limited to mean values per tree. For the first time, CC (%) series from two high-Alpine species, Larix decidua Mill. (European Larch, LADE) and Pinus cembra L. (Swiss stone pine, PICE) are investigated in modern wood samples and Holocene wood remains from the Early and mid-Holocene. Modern CC (%) series reveal a species-specific low-frequency trend independent of their sampling site over the past 150 years. Climate-cellulose relationships illustrate the ability of CC (%) to record temperature in both species but for slightly different periods within the growing season. The Holocene CC (%) series illustrate diverging low-frequency trends in both species, independent of sampling site characteristics (latitude, longitude and elevation). Moreover, potential age trends are not apparent in the two coniferous species. The arithmetic mean of CC (%) series in the Early and mid-Holocene indicate low CC (%) succeeding cold events. In conclusion, CC (%) in tree rings show high potential to be established as novel supplementary proxy in dendroclimatology.

Evaluation of Climate Change in northeastern China by means of d13C in tree-rings in the Great Xiang'An mountains region

NASA Astrophysics Data System (ADS)

Zhang, Qiqin; Lopez Caceres, Maximo Larry; Sugimoto, Atsuko; Wang, Xiaochun; Liu, Binhui

2017-04-01

The northeastern forest region of China represents one of the southern boundary of the Asian boreal forest and also represents the boundary between humid- semi humid area and arid- semi arid area of China. These forests are mainly dominated by larch (Larix gmelinii) stands with small areas covered by birch and pine forests. Increases in air temperature and precipitation caused by climate change are expected to have a great effect on forest ecosystems boundaries. Accordingly, from 1963-2006, air temperature has increased 1.5℃ in this region. Tree-ring chronologies are commonly used as indicator of climate changes and in recent decades the combination with carbon stable isotopes has shown a higher resolution in the results. Since this combine technique has not been used in northeastern China, we applied this combined technique to reconstruct the climate in the Great Xing'an mountains of northeastern China. Preliminary results showed that tree growth has increased in the middle and southernmost site in the last century while in the northernmost site it decreased for the same period which is in agreement with the mean air temperature increase from south to north in this region under negligible changes in precipitation regime. In contrast, tree-ring δ13C shows a gradual but steady increase along the three sites selected for our study, however the highest being observed in the middle site which experience the largest increased in air temperature in the last decade. This appears to indicate that increases in air temperature produced a stress in the stomatal conductance that so far has translated into tree ring growth decline.

Pressure injection of methyl 2-benzimidazole carbamate hydrochloride solution as a control for Dutch elm disease

Treesearch

Garold F. Gregory; Thomas W. Jones

1973-01-01

A preliminary evaluation of the effectiveness of injecting methyl 2-benzimidazole carbamate hydrochloride solution into elms for prevention or cure of Dutch elm disease is reported. Symptom development was diminished or prevented in elms injected with fungicide before inoculation. Symptom development was arrested in all crown-inoculated diseased trees injected with the...

75 FR 64259 - Certain New Pneumatic Off-the-Road Tires From the People's Republic of China: Preliminary Results...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-19

... the rear tires. \\9\\ A log-skidder has a grappling lift arm that is used to grasp, lift and move trees... grading'' in road construction. \\14\\ A straddle carrier is a rigid frame, engine-powered machine that is... is a rigid framed, engine- powered machine with lift arms that has additional weight incorporated...

Handbook for predicting residue weights of Pacific Northwest conifers.

Treesearch

J.A. Kendall Snell; James K. Brown

1980-01-01

Procedures are given forest estimating weights of potential residue from Douglas- fir and western hemlock created by forest management activities west of the summit of the Cascade Range. Preliminary estimates are given for six other species. The weight tables are in pounds per tree and pounds per square foot of basal area for a 6- or 8- inch unmerchantable tip. The...

Sulfuryl fluoride fumigation of red oak logs eradicates the oak wilt fungus

Treesearch

Elmer L. Schmidt; Jennifer Juzwik; Brian Schneider

1997-01-01

Preliminary field trials using red oak logs from trees dying from oak wilt disease were successful in eliminating oak wilt fungus from sapwood after fumigation with sulfuryl fluoride for 72 h under tarp. These results support earlier laboratory data on the fungitoxicity of sulfuryl fluoride as a potential replacement for methyl bromide of exported red oak veneer logs....

Leaf Quality and the Host Preferences of Gypsy Moth in the Northern Deciduous Forest

Treesearch

Martin J.  Lechowicz

1983-01-01

Both gypsy morh host preferences and the foliage characteristics thaL have been implicated as factors in host selection were monitored from 1979 to 1982 in a Quercus-Acer-Ostrya forest near Montreal, Quebec. The preliminary analyses of these data suggest the hypothesis that gypsy moth larvae preferentially attack trees that have high sugar:tannin...

Application of Boosting Regression Trees to Preliminary Cost Estimation in Building Construction Projects

PubMed Central

2015-01-01

Among the recent data mining techniques available, the boosting approach has attracted a great deal of attention because of its effective learning algorithm and strong boundaries in terms of its generalization performance. However, the boosting approach has yet to be used in regression problems within the construction domain, including cost estimations, but has been actively utilized in other domains. Therefore, a boosting regression tree (BRT) is applied to cost estimations at the early stage of a construction project to examine the applicability of the boosting approach to a regression problem within the construction domain. To evaluate the performance of the BRT model, its performance was compared with that of a neural network (NN) model, which has been proven to have a high performance in cost estimation domains. The BRT model has shown results similar to those of NN model using 234 actual cost datasets of a building construction project. In addition, the BRT model can provide additional information such as the importance plot and structure model, which can support estimators in comprehending the decision making process. Consequently, the boosting approach has potential applicability in preliminary cost estimations in a building construction project. PMID:26339227

Application of Boosting Regression Trees to Preliminary Cost Estimation in Building Construction Projects.

PubMed

Shin, Yoonseok

2015-01-01

Among the recent data mining techniques available, the boosting approach has attracted a great deal of attention because of its effective learning algorithm and strong boundaries in terms of its generalization performance. However, the boosting approach has yet to be used in regression problems within the construction domain, including cost estimations, but has been actively utilized in other domains. Therefore, a boosting regression tree (BRT) is applied to cost estimations at the early stage of a construction project to examine the applicability of the boosting approach to a regression problem within the construction domain. To evaluate the performance of the BRT model, its performance was compared with that of a neural network (NN) model, which has been proven to have a high performance in cost estimation domains. The BRT model has shown results similar to those of NN model using 234 actual cost datasets of a building construction project. In addition, the BRT model can provide additional information such as the importance plot and structure model, which can support estimators in comprehending the decision making process. Consequently, the boosting approach has potential applicability in preliminary cost estimations in a building construction project.

Monitoring vegetation water uptake in a semiarid riparian corridor

NASA Astrophysics Data System (ADS)

Robinson, J.; Ochoa, C. G.; Leonard, J.

2015-12-01

With a changing global climate and growing demand for water throughout the world, responsible and sustainable land and water resource management practices are becoming increasingly important. Accounting for the amount of water used by riparian vegetation is a critical element for better managing water resources in arid and semiarid environments. The objective of this study was to determine water uptake by selected riparian vegetative species in a semiarid riparian corridor in North-Central Oregon. Exo-skin sap flow sensors (Dynamax, Houston, TX, U.S.A.) were used to measure sap flux in red alder (Alnus rubra) trees, the dominant overstory vegetation at the field site. Xylem sap flow data was collected from selected trees at the field site and in a greenhouse setting. Transpiration rates were determined based on an energy balance method, which makes it possible to estimate the mass flow of sap by measuring the velocity of electrical heat pulses through the plant stem. Preliminary field results indicate that red alder tree branches of about 1 inch diameter transpire between 2 and 6 kg of water/day. Higher transpiration rates of up to 7.3 kg of water/day were observed under greenhouse conditions. Streamflow and stream water temperature, vegetation characteristics, and meteorological data were analyzed in conjunction with transpiration data. Results of this study provide insight on riparian vegetation water consumption in water scarce ecosystems. This study is part of an overarching project focused on climate-vegetation interactions and ecohydrologic processes in arid and semiarid landscapes.

High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species.

PubMed

Brousseau, Louise; Tinaut, Alexandra; Duret, Caroline; Lang, Tiange; Garnier-Gere, Pauline; Scotti, Ivan

2014-03-27

The Amazonian rainforest is predicted to suffer from ongoing environmental changes. Despite the need to evaluate the impact of such changes on tree genetic diversity, we almost entirely lack genomic resources. In this study, we analysed the transcriptome of four tropical tree species (Carapa guianensis, Eperua falcata, Symphonia globulifera and Virola michelii) with contrasting ecological features, belonging to four widespread botanical families (respectively Meliaceae, Fabaceae, Clusiaceae and Myristicaceae). We sequenced cDNA libraries from three organs (leaves, stems, and roots) using 454 pyrosequencing. We have developed an R and bioperl-based bioinformatic procedure for de novo assembly, gene functional annotation and marker discovery. Mismatch identification takes into account single-base quality values as well as the likelihood of false variants as a function of contig depth and number of sequenced chromosomes. Between 17103 (for Symphonia globulifera) and 23390 (for Eperua falcata) contigs were assembled. Organs varied in the numbers of unigenes they apparently express, with higher number in roots. Patterns of gene expression were similar across species, with metabolism of aromatic compounds standing out as an overrepresented gene function. Transcripts corresponding to several gene functions were found to be over- or underrepresented in each organ. We identified between 4434 (for Symphonia globulifera) and 9076 (for Virola surinamensis) well-supported mismatches. The resulting overall mismatch density was comprised between 0.89 (S. globulifera) and 1.05 (V. surinamensis) mismatches/100 bp in variation-containing contigs. The relative representation of gene functions in the four transcriptomes suggests that secondary metabolism may be particularly important in tropical trees. The differential representation of transcripts among tissues suggests differential gene expression, which opens the way to functional studies in these non-model, ecologically important species. We found substantial amounts of mismatches in the four species. These newly identified putative variants are a first step towards acquiring much needed genomic resources for tropical tree species.

Quantifying the role of trees as Critical Zone architects employing crowbars, wedges and other tools of soil production

NASA Astrophysics Data System (ADS)

Marshall, J. A.; Anderson, R. S.; Dawson, T. E.; Dietrich, W. E.; Sklar, L. S.

2016-12-01

The Critical Zone (CZ) supports diverse functions such as water routing, net primary productivity, carbon storage, and mineral supplies for the geochemical reactor. The detailed architecture of the CZ, and the pace at which it evolves, are strongly influenced by the rate at which bedrock is converted to mobile material (the soil production rate). While trees serve as rebar-like soil stabilizers over short time scales, over longer time scales tree-driven forces can damage, disrupt and detach bedrock, and hence play a key role in soil production. Root growth and tree throw then can both release rock from the underlying bedrock and contribute to the downslope transport of the mobile material. Thus, the physical mechanisms controlling tree-driven soil production may set the pace and style of both the production and transport of soil. However, we know little about how or how often trees damage rock, create fractures, or expand existing fractures in competent bedrock or saprolite. Measurement of the relevant forces at the bedrock-root interface is difficult. Here we present preliminary data from a novel technique that allows us to document both root-growth and wind-induced forces at the rock-root interface at the Boulder Creek and Eel River Critical Zone Observatories. By combining force measurements with wind speed and wind-driven tree sway data, we quantify the magnitude and frequency of tree-driven soil-production mechanisms at two sites with differing climates and lithologies. In addition, we describe physical experiments in which we grow tree roots within pre-instrumented, manufactured fractures to measure the potential for root growth forces to induce crack tip propagation, to induce stress fatigue or to exceed the tensile or compressive strength of weak bedrock. Combined, these field and laboratory measurements provide mechanistic insight into the roles of trees as architects of the Critical Zone.

Trees and Weathering: Using Soil Petrographic and Chemical Analyses to Compare the Relative Weathering Effects of Gymnosperms and Angiosperms in the Cascade Mountains of Washington State, USA

NASA Astrophysics Data System (ADS)

Andrews, M. Y.; Ague, J. J.; Berner, R. A.

2006-12-01

Knowledge of the long-term carbon cycle and its control on atmospheric carbon dioxide levels over the Phanerozoic is crucial to understanding the impending dynamics of contemporary anthropogenic carbon contributions to the atmosphere. One aspect of the long-term carbon cycle that is poorly understood is the role of large vascular plants (trees) in contributing to the chemical weathering of silicate minerals. In particular, little is known about the differences in weathering rates between gymnosperms and angiosperms and how these dissimilarities may have impacted the carbon cycle subsequent to the evolution of angiosperm trees in the Mesozoic. One approach to evaluating these potential differences in weathering is to examine and quantitatively compare the chemistry and petrology of the soil mineral constituents from beneath modern groves of each broad tree type, where the groves have been subject to nearly identical environmental and geological conditions. This particular study focuses on field samples collected along transects through adjacent groves of angiosperms and gymnosperms in the Cascade Mountains of Washington State. Preliminary data demonstrate a significant difference in the soil texture and composition beneath the two types of trees. While soil at each field site has been generated from a homogeneous parent material, and subjected to similar inorganic environmental phenomena, soil density, particle size, and organic content vary across the transects. Soils beneath the angiosperms are denser and have a more clay-like texture, while soils beneath the gymnosperms are more organic-rich and have a sandy texture. Additional macroscopic and microscopic differences in the chemistry and petrology of these soils will illuminate the varied impacts these trees have on the silicate minerals in their immediate environment, and therefore lend insight into the potential impact these groups of organisms have had on the long-term carbon cycle over the past five hundred million years.

Mapping the Distribution of Sand Live Oak (Quercus geminata) and Determining Growth Responses to Hurricane Katrina (2005) on Cat Island, Mississippi

NASA Astrophysics Data System (ADS)

Funderburk, W.; Carter, G. A.; Harley, G. L.

2013-12-01

William R. Funderburk, Gregory A. Carter, Grant Harley Gulf Coast Geospatial Center, University of Southern Mississippi Department of Geography and Geology Stennis Space Center, MS 39529 U.S.A. william.funderburk@usm.edu The Mississippi-Alabama barrier islands serve to buffer mainland coastal areas from the impacts of hurricanes and other extreme weather events. On August 29, 2005, they were impacted heavily by the wind, waves, and storm surges of Hurricane Katrina. The purpose of this study is to determine the growth responses of Quercus geminata, a dominant tree species on Cat Island, MS, in relation to the impact of Hurricane Katrina. Remotely sensed data was utilized in conjunction with ground data to assess growth response post Hurricane Katrina. The main objectives of this study were: 1) determine growth response of Q. geminata through tree ring analysis; 2) understand how Q. geminata adapted to intense weather and climatic phenomena on Cat Island. The hypotheses tested were: 1) growth rates of Q. geminata on Cat Island were decreased by the impact of Hurricane Katrina 2) trees at higher elevations survived or recovered while trees at lower elevations did not recover or died. Decadal scale stability is required for forest stand development on siliciclastic barrier islands. Thus, monitoring the distribution of forest climax community species is key to understanding siliciclastic, subsiding, barrier island geomorphic processes and their relationships to successional patterns and growth rates. Preliminary results indicate that Q. geminata produces a faint growth ring, survive for at least two to three hundred years and is well-adapted to frequent salt water flooding. Cat Island: False color Image

Long-term Hydroclimate and Pacific Salmon Population Linkages Across a Headwater-to-Coast Continuum in Northern British Columbia, Canada: A Perspective From Multiple Tree-Ring Proxy Records

NASA Astrophysics Data System (ADS)

Welsh, C.; Smith, D. J.; Edwards, T.; Prowse, T.

2016-12-01

Ongoing climate change is expected to have lasting impacts on the runoff behaviour of rivers in northern British Columbia, Canada. Of particular concern is the loss of mountain snowpack and greater rainfall totals altering hydrograph characteristics. Sustained deviations in seasonal streamflow will pose significant challenges for effective watershed management. These ongoing changes highlight the importance of improving our understanding of the long-term biophysical linkages between the storage and release of water and downstream freshwater ecosystems. Such integrated research is particularly relevant to fisheries management as fluctuations in populations of Pacific salmon represent a complex and management-relevant biophysical issue in northern Canada. Unfortunately, hydroclimate and salmon productivity records in this region are sparse and of short duration, constraining our understanding of the impact of climate-induced hydrologic changes and biological responses to the last century. Proxy records derived from tree-rings provide annually or seasonally resolved data and have played a prominent role in attempts to establish how hydroclimate has varied in the past. The objective of my doctoral research is to reconstruct the prehistoric hydroclimate and salmon population trends in the Skeena, Nass and Stikine Watersheds using multiple tree-ring proxies to investigate the long-term biophysical linkages extending across a headwater-to-coast continuum in northern British Columbia, Canada. Ring-width, wood density and stable isotope chronologies using a number of mid-to high-elevation tree species will be constructed across each basin and sub-basin area for the purposes of reconstrucing the predominent temperature and precipiation signature that influence streamflow. Preliminary tree-ring δ18O and δ13C-isotope results indicate a strong negative association with mean monthly relative humidity values, suggesting a physiological control by moisture loss. The results of this study highlight the importance of combining several tree-ring parameters and species in order to strengthen streamflow reconstructions. This study is ongoing and has an estimated completion timeframe of spring 2018.

Responses of forest carbon and water coupling to thinning treatments at both the leaf and individual tree levels in a 16-year-old natural Pinus Contorta stand

NASA Astrophysics Data System (ADS)

Wang, Y.; Wei, A.; del Campo, A.; Li, Q.; Giles-Hansen, K.

2017-12-01

Large-scale disturbances in Canadian forests, including mountain pine beetle infestation in western Canada, forest fires, timber harvesting and climate change impacts, have significantly affected both forest carbon and water cycles. Thinning, which selectively removes trees at a given forest stand, may be an effective tool to mitigate the effect of these disturbances. Various studies have been conducted to assess the thinning effect on growth, transpiration, and nutrient availability; however, relatively few studies have been conducted to examine its effect on the coupling of forest carbon and water. Thus, the objective of this research is to evaluate the effect of thinning on forest carbon and water coupling at both the leaf and tree levels in a 16-year-old natural Pinus Contorta forest in the interior of British Columbia in Canada. We used water-use efficiency (WUE), the ratio of basal area increment (BA) to tree transpiration (E), as the indicator of the carbon and water coupling at individual tree level, and use intrinsic water-use efficiency (iWUE), the ratio of photosynthesis (A) to stomatal conductance (G), to represent the coupling at the leaf level. Field experiments were conducted in the Upper Penticton Watershed where the mean annual precipitation is 750 mm with seasonal drought during summer. A randomized block design was used, with three blocks each containing two thinning intensities and one unthinned plot (T1: 4,500, T2: 1,100, C: 26,400 trees per ha.). From May to October 2016, basal diameter, sap flow, and environmental conditions were monitored continuously at every 20 minutes, while A and G were measured weekly. Preliminary results showed that thinning significantly increased solar radiation, wind speed, and soil moisture in the treatment plots, where the changes observed were proportional to the intensity of the thinning; but thinning did not change stand level temperature and relative humidity. Thinning also significantly enhanced tree E and BA, but no significant differences in WUE at both spatial scales were observed and no scaling relationship was detected. Overall, our data indicated that in the short term, thinning enhanced water consumption and carbon assimilation, but did not alter their coupling. However, the impact of thinning needs further investigation over a longer research period.

Use of the antiozonant ethylenediurea (EDU) in Italy: verification of the effects of ambient ozone on crop plants and trees and investigation of EDU's mode of action.

PubMed

Paoletti, Elena; Contran, Nicla; Manning, William J; Ferrara, Anna M

2009-05-01

Twenty-four experiments where EDU was used to protect plants from ozone (O(3)) in Italy are reviewed. Doses of 150 and 450 ppm EDU at 2-3 week intervals were successfully applied to alleviate O(3)-caused visible injury and growth reductions in crop and forest species respectively. EDU was mainly applied as soil drench to crops and by stem injection or infusion into trees. Visible injury was delayed and reduced but not completely. In investigations on mode of action, EDU was quickly (<2h) uptaken and translocated to the leaf apoplast where it persisted long (>8 days), as it cannot move via phloem. EDU did not enter cells, suggesting it does not directly affect cell metabolism. EDU delayed senescence, did not affect photosynthesis and foliar nitrogen content, and stimulated antioxidant responses to O(3) exposure. Preliminary results suggest developing an effective soil application method for forest trees is warranted.

Purification, crystallization and preliminary X-ray diffraction analysis of royal palm tree (Roystonea regia) peroxidase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Watanabe, Leandra; Nascimento, Alessandro S.; Zamorano, Laura S.

2007-09-01

The purification, crystallization, X-ray diffraction data acquisition and molecular-replacement results of royal palm tree (R. regia) peroxidase are described. Royal palm tree peroxidase (RPTP), which was isolated from Roystonea regia leaves, has an unusually high stability that makes it a promising candidate for diverse applications in industry and analytical chemistry [Caramyshev et al. (2005 ▶), Biomacromolecules, 6, 1360–1366]. Here, the purification and crystallization of this plant peroxidase and its X-ray diffraction data collection are described. RPTP crystals were obtained by the hanging-drop vapour-diffusion method and diffraction data were collected to a resolution of 2.8 Å. The crystals belong to themore » trigonal space group P3{sub 1}21, with unit-cell parameters a = b = 116.83, c = 92.24 Å, and contain one protein molecule per asymmetric unit. The V{sub M} value and solvent content are 4.07 Å{sup 3} Da{sup −1} and 69.8%, respectively.« less

North Pacific decadal climate variability since 1661

USGS Publications Warehouse

Biondi, Franco; Gershunov, Alexander; Cayan, Daniel R.

2001-01-01

Climate in the North Pacific and North American sectors has experienced interdecadal shifts during the twentieth century. A network of recently developed tree-ring chronologies for Southern and Baja California extends the instrumental record and reveals decadal-scale variability back to 1661. The Pacific decadal oscillation (PDO) is closely matched by the dominant mode of tree-ring variability that provides a preliminary view of multiannual climate fluctuations spanning the past four centuries. The reconstructed PDO index features a prominent bidecadal oscillation, whose amplitude weakened in the late l700s to mid-1800s. A comparison with proxy records of ENSO suggests that the greatest decadal-scale oscillations in Pacific climate between 1706 and 1977 occurred around 1750, 1905, and 1947.

Preliminary guides for the management of lodgepole pine in Oregon and Washington.

Treesearch

Edwin L. Mowat

1949-01-01

There are some 2 million acres of lodgepole pine in eastern Oregon and Washington. Much of it was formerly classified as noncommercial; the trees were small, many were limby, and there was very little market for the low-value products. But the type has lately gained in commercial importance, and results of such little forest research as has been devoted to lodgepole...

Preliminary Evaluation of Methods for Classifying Forest Site Productivity Based on Species Composition in Western North Carolina

Treesearch

W. Henry McNab; F. Thomas Lloyd; David L. Loftis

2002-01-01

The species indicator approach to forest site classification was evaluated for 210 relatively undisturbed plots established by the USDA Forest Service Forest Inventory and Analysis uni (FIA) in western North Carolina. Plots were classified by low, medium, and high levels of productivity based on 10-year individual tree basal area increment data standardized for initial...

A preliminary aboveground live biomass model for understory hardwoods from Arkansas, Louisiana, and Mississippi

Treesearch

Don C. Bragg; D. Andrew. Scott

2014-01-01

Hardwood understories can contribute significantly to total ecosystem biomass and fuel loads, but few models are available to directly quantify this component. In part, this is due to the small size of the hardwoods. Many understory trees simply do not reach the height required to determine diameter at breast height (d.b.h.), so conventional models (e.g., the National...

Preliminary overview of the first extensive rust resistance screening tests of Pinus flexilis and Pinus aristata

Treesearch

Anna W. Schoettle; Richard A. Sniezko; Angelia Kegley; Kelly S. Burns

2011-01-01

Limber pine ( Pinus flexilis James) and Rocky Mountain bristlecone pine (P. aristata Engelm.; hereafter referred to as bristlecone pine) are the dominant pines that occupy high elevation habitats of the southern Rockies. Bristlecone pine is primarily a subalpine and tree-line species while limber pine in the southern Rocky Mountains grows from 1600 m in the short grass...

Effects of low intensity prescribed fires on ponderosa pine forests in wilderness areas of Zion National Park, Utah

Treesearch

Henry V. Bastian

2001-01-01

Vegetation and fuel loading plots were monitored and sampled in wilderness areas treated with prescribed fire. Changes in ponderosa pine (Pinus ponderosa) forest structure tree species and fuel loading are presented. Plots were randomly stratified and established in burn units in 1995. Preliminary analysis of nine plots 2 years after burning show litter was reduced 54....

Formulating an image matching strategy for terrestrial stem data collection using a multisensor video system

Treesearch

Neil A. Clark

2001-01-01

A multisensor video system has been developed incorporating a CCD video camera, a 3-axis magnetometer, and a laser-rangefinding device, for the purpose of measuring individual tree stems. While preliminary results show promise, some changes are needed to improve the accuracy and efficiency of the system. Image matching is needed to improve the accuracy of length...

Analysis of the effect of evergreen and deciduous trees on urban nitrogen dioxide levels in the U.S. using land-use regression

NASA Astrophysics Data System (ADS)

Rao, M.; George, L. A.

2012-12-01

Nitrogen dioxide (NO2), an atmospheric pollutant generated primarily by anthropogenic combustion processes, is typically found at higher concentrations in urban areas compared to non-urbanized environments. Elevated NO2 levels have multiple ecosystem effects at different spatial scales. At the local scale, elevated levels affect human health directly and through the formation of secondary pollutants such as ozone and aerosols; at the regional scale secondary pollutants such as nitric acid and organic nitrates have deleterious effects on non-urbanized areas; and, at the global scale, nitrogen oxide emissions significantly alter the natural biogeochemical nitrogen cycle. As cities globally become larger and larger sources of nitrogen oxide emissions, it is important to assess possible mitigation strategies to reduce the impact of emissions locally, regionally and globally. In this study, we build a national land-use regression (LUR) model to compare the impacts of deciduous and evergreen trees on urban NO2 levels in the United States. We use the EPA monitoring network values of NO2 levels for 2006, the 2006 NLCD tree canopy data for deciduous and evergreen canopies, and the US Census Bureau's TIGER shapefiles for roads, railroads, impervious area & population density as proxies for NO2 sources on-road traffic, railroad traffic, off-road and area sources respectively. Our preliminary LUR model corroborates previous LUR studies showing that the presence of trees is associated with reduced urban NO2 levels. Additionally, our model indicates that deciduous and evergreen trees reduce NO2 to different extents, and that the amount of NO2 reduced varies seasonally. The model indicates that every square kilometer of deciduous canopy within a 2km buffer is associated with a reduction in ambient NO2 levels of 0.64 ppb in summer and 0.46ppb in winter. Similarly, every square kilometer of evergreen tree canopy within a 2 km buffer is associated with a reduction in ambient NO2 by 0.53 ppb in summer and 0.84 ppb in winter. Thus, the model indicates that deciduous trees are associated with a 30% smaller reduction in NO2 in winter as compared to summer, while evergreens are associated with a 60% increase in the reduction of NO2 in winter, for every square kilometer of deciduous or evergreen canopy within a 2 km buffer. Leaf- and local canopy-level studies have shown that trees are a sink for urban NO2 through deposition as well as stomatal and cuticular uptake. The winter time versus summer time effects suggest that leaf-level deposition may not be the only uptake mechanism and points to the need for a more holistic analysis of tree and canopy-level deposition for urban air pollution models. Since deposition velocities for NO2 vary by tree species, the reduction may also vary by species. These findings have implications for designing cities to reduce the impact of air pollution.

International consensus on preliminary definitions of improvement in adult and juvenile myositis.

PubMed

Rider, Lisa G; Giannini, Edward H; Brunner, Hermine I; Ruperto, Nicola; James-Newton, Laura; Reed, Ann M; Lachenbruch, Peter A; Miller, Frederick W

2004-07-01

To use a core set of outcome measures to develop preliminary definitions of improvement for adult and juvenile myositis as composite end points for therapeutic trials. Twenty-nine experts in the assessment of myositis achieved consensus on 102 adult and 102 juvenile paper patient profiles as clinically improved or not improved. Two hundred twenty-seven candidate definitions of improvement were developed using the experts' consensus ratings as a gold standard and their judgment of clinically meaningful change in the core set of measures. Seventeen additional candidate definitions of improvement were developed from classification and regression tree analysis, a data-mining decision tree tool analysis. Six candidate definitions specifying percentage change or raw change in the core set of measures were developed using logistic regression analysis. Adult and pediatric working groups ranked the 13 top-performing candidate definitions for face validity, clinical sensibility, and ease of use, in which the sensitivity and specificity were >/=75% in adult, pediatric, and combined data sets. Nominal group technique was used to facilitate consensus formation. The definition of improvement (common to the adult and pediatric working groups) that ranked highest was 3 of any 6 of the core set measures improved by >/=20%, with no more than 2 worse by >/=25% (which could not include manual muscle testing to assess strength). Five and 4 additional preliminary definitions of improvement for adult and juvenile myositis, respectively, were also developed, with several definitions common to both groups. Participants also agreed to prospectively test 6 logistic regression definitions of improvement in clinical trials. Consensus preliminary definitions of improvement were developed for adult and juvenile myositis, and these incorporate clinically meaningful change in all myositis core set measures in a composite end point. These definitions require prospective validation, but they are now proposed for use as end points in all myositis trials.

Does tree harvesting in riparian areas increase stream sedimentation and turbidity - world-wide experience relative to Australia.

NASA Astrophysics Data System (ADS)

Neary, D.; Smethurst, P.; Petrone, K.

2009-04-01

A typical improved-pasture property in the high-rainfall zone of Australia contains 0.5-2.0 km of waterways per 100 ha. Nationwide, some 25-30 million ha of improved pasture contains about 100,000 km of streams, of which about 75% are currently un-buffered and contributing to soil and water degradation. Farmers and natural resource managers are considering ways to enhance environmental outcomes at farm and catchment scales using stream-side buffers of trees and other perennial vegetation. Benefits of buffers include improved water quality, biodiversity, carbon sequestration and aesthetics. Lack of sound information and funding for establishing and managing buffer zones is hindering wide-scale adoption of this practice. Stream-side areas of farms are generally highly productive (wet and nutrient-rich) and contain a high biodiversity, but they are also high-risk zones for soil and water values and stock safety. Development of options based on a balance between environmental and economic outcomes would potentially promote wider adoption. Australian codes of forest practice currently discourage or prevent harvesting of trees in streamside buffers. These codes were developed exclusively for large-scale native forests and industrial-scale plantations, and were applicable to farm forestry as now required. In countries including USA and Germany trees in stream-side buffers are harvested using Best Management Practices. Trees may grow at a faster rate in riparian zones and provide a commercial return, but the impacts of tree establishment and harvesting on water yield and quality must be evaluated. However, there have been few designed experiments investigating this problem. Australia has recently initiated studies to explore the use of high-value timber species and associated vegetation in riparian zones to improve water quality, particularly suspended sediment. Preliminary information from the Yan Yan Gurt Catchment in Victoria indicate that forested riparian strips can retain 98% of the sediment entrained in runoff from agricultural sections of the catchment. This paper examines the science background from North American and European experiences relative to Australia, with particular emphasis on sediment relationships after tree harvesting using Best Management Practices.

Linking Plant Water-Use Efficiency and Depth of Water Uptake to Field­-Level Productivity Under Surplus and Deficit Irrigation in Almond Orchards

NASA Astrophysics Data System (ADS)

Seely, T.; Shackel, K.; Silva, L. C. R.

2016-12-01

The impact of water stress on depth of water uptake, as well as water­-use efficiency (WUE) at the tree-level and field-level was examined in almond orchards under varying degrees of deficit and surplus irrigation treatments. Three different orchards, spanning a latitudinal gradient (35° to 39° N) were sampled during two growing seasons in the central valley of CA. The orchards encompass a range of climatic and edaphic conditions, providing an opportunity for comparisons of WUE and orchard yield under contrasting environmental conditions. In each orchard, the control treatment received 100% replacement of water lost to evapotranspiration (ET), while the surplus treatment received 110% and the deficit treatment received 70% replenishment of ET, the latter simulating conditions of water stress. Preliminary results based on the analysis of carbon isotope ratios (δ13C) in leaves throughout the 2015 and 2016 growing seasons, reveal a significant change in WUE in all three orchard sites, increasing up to 20% on average in the deficit irrigation treatment relative to controls. In contrast, trees growing under surplus irrigation had the lowest WUE across all orchard sites. The difference in WUE between surplus irrigated trees and control irrigated trees within each orchard was not always statistically significant. These physiological responses to levels of water availability were not reflected in field-level orchard productivity, which was highly variable across orchard sites and treatments. Additionally, analysis of oxygen (δ18O) and hydrogen (δ2H) isotope ratios of stem, leaf, and soil water has been undertaken to determine the effect of water stress on the depth of root water uptake. The hypothesis that almond trees can effectively acclimate to water stress through higher WUE and deeper root water uptake compared to well-watered trees will be tested. This multi-scale, ecohydrological study will elucidate the impacts of drought on almond orchards, one of the most water-intensive crops in California, as well as other tree­-dominated systems.

Determining Biophysical Controls on Forest Structure using Hyperspatial Satellite Imagery and Ecological Gradient Modeling

NASA Astrophysics Data System (ADS)

Dobrowski, S. Z.; Greenberg, J. A.; Schladow, G.

2006-12-01

There is evidence from the Sierra Nevada that sub-alpine and alpine environments are currently experiencing landscape-mediated changes in growth and recruitment due to recent climate change. Understanding the biophysical controls of forest structure, growth, and recruitment in these environments is critical for interpreting and predicting the direction and magnitude of biotic responses to climate shift. We examined the abiotic controls of forest biomass within a 305 km2 region of the Carson Range on the eastern shore of Lake Tahoe, CA USA using estimates of forest structure and biophysical drivers developed continuously over the landscape. The study area ranged from 1900 m to 3400 m a.s.l. and encompassed montane, sub-alpine, and alpine environments. From hyperspatial optical imagery (IKONOS), we derived per-tree positions and crown sizes using a template matching approach applied to a pre-classified image of sunlit and shadowed vegetation pixels. From this remote sensing derived stem map, we calculated plot-level estimates of stem density, tree cover and average crown size. Additionally, we developed high resolution (30 m) estimates of climate variables within the study area using meteorological station data, topographic data, and a combination of empirical and mechanistic modeling approaches. From these climate surfaces, digital elevation data, and soil survey data, we derived estimates of direct and indirect biophysical drivers including heat loading, reference evapotranspiration, water deficit, solar radiation, topographic convergence, soil depth, and soil water holding capacity. Using these data sets, we conducted a regression tree analysis with stem density, tree cover, and average tree size as response and biophysical drivers as predictors. Trees were fit using half of the dataset randomly sampled (168,000 samples) and pruned using cost-complexity pruning based on 10-fold cross- validation. Predictions from pruned trees were then assessed against the hold-out data. Preliminary results from this analysis suggest that: 1) the relative importance and dependencies of biophysical drivers on forest structure are contingent upon the position of these forests along gradients of a limiting resource, 2) stem density shows a stronger dependence on water availability than tree size and 3) that the predictive power of abiotic variables are limited with our best models accounting for only 36-40 percent of the variance in the response. These results suggest that the response of forest structure to climate change may be highly idiosyncratic and difficult to predict using abiotic drivers alone.

Automated identification of best-quality coronary artery segments from multiple-phase coronary CT angiography (cCTA) for vessel analysis

NASA Astrophysics Data System (ADS)

Zhou, Chuan; Chan, Heang-Ping; Hadjiiski, Lubomir M.; Chughtai, Aamer; Wei, Jun; Kazerooni, Ella A.

2016-03-01

We are developing an automated method to identify the best quality segment among the corresponding segments in multiple-phase cCTA. The coronary artery trees are automatically extracted from different cCTA phases using our multi-scale vessel segmentation and tracking method. An automated registration method is then used to align the multiple-phase artery trees. The corresponding coronary artery segments are identified in the registered vessel trees and are straightened by curved planar reformation (CPR). Four features are extracted from each segment in each phase as quality indicators in the original CT volume and the straightened CPR volume. Each quality indicator is used as a voting classifier to vote the corresponding segments. A newly designed weighted voting ensemble (WVE) classifier is finally used to determine the best-quality coronary segment. An observer preference study is conducted with three readers to visually rate the quality of the vessels in 1 to 6 rankings. Six and 10 cCTA cases are used as training and test set in this preliminary study. For the 10 test cases, the agreement between automatically identified best-quality (AI-BQ) segments and radiologist's top 2 rankings is 79.7%, and between AI-BQ and the other two readers are 74.8% and 83.7%, respectively. The results demonstrated that the performance of our automated method was comparable to those of experienced readers for identification of the best-quality coronary segments.

Wood Anatomy and Insect Defoliator Systems: Is there an anatomical response to sustained feeding by the western spruce budworm (Choristoneura occidentalis) on Douglas-fir (Pseudotusga menziesii)?

NASA Astrophysics Data System (ADS)

Axelson, Jodi; Gärtner, Holger; Alfaro, René; Smith, Dan

2013-04-01

The western spruce budworm (Choristoneura occidentalis Freeman) is the most widespread and destructive defoliator of coniferous forests in western North America, and has a long-term coexistence with its primary host tree, Douglas-fir (Pseudotsuga menziesii Franco). Western spruce budworm (WSB) outbreaks usually last for several years, and cause reductions in annual growth, stem defects, and regeneration delays. In British Columbia, the WSB is the second most damaging insect after the mountain pine beetle, and sustained and/or severe defoliation can result in the mortality of host trees. Numerous studies have used tree rings to reconstruct WSB outbreaks across long temporal scales, to evaluate losses in stand productivity, and examine isotope ratios. Although some studies have looked at the impacts of artificial defoliation on balsam fir in eastern North America, there has been no prior research on how WSB outbreaks affect the anatomical structure of the stem as described by intra-annual wood density and potential cell size variations. The objective of this study was to anatomically examine the response of Douglas-fir to sustained WSB outbreaks in two regions of southern British Columbia. We hypothesize that the anatomical intra-annual characteristics of the tree rings, such as cell wall thickness, latewood cell size, and/or lumen area changes during sustained WSB outbreaks. To test this hypothesis we sampled four permanent sample plots in coastal and dry interior sites, which had annually resolved defoliation data collected over a 7-12 year period. At each site diameter-at-breast height (cm), height (m), and crown position were recorded and three increment cores were extracted from 25 trees. Increment cores were prepared to permit anatomical and x-ray density analyses. For each tree, a 15µm thick micro section was cut from the radial plane. Digital images of the micro sections were captured and processed. In each annual ring, features such as cell lumen area (µm2), cell wall thickness (µm), lumen diameter (µm), and total cell width (µm) were measured. Preliminary results indicate that earlywood parameters remain quite stable during WSB outbreak, while latewood parameters such as secondary cell wall thickness and cell length undergo step shifts at the beginning and end of outbreaks. These parameters, tree-level data, and annual defoliation data will further be tested to determine if changes in stem wood anatomy during WSB outbreaks were statistically significant.

Combining multiple isotopes and metagenomic to delineate the role of tree canopy nitrification in European forests along nitrogen deposition and climate gradients

NASA Astrophysics Data System (ADS)

Guerrieri, R.; Avila, A.; Barceló, A.; Elustondo, D.; Hellstein, S.; Magnani, F.; Mattana, S.; Matteucci, G.; Merilä, P.; Michalski, G. M.; Nicolas, M.; Vanguelova, E.; Verstraeten, A.; Waldner, P.; Watanabe, M.; Penuelas, J.; Mencuccini, M.

2017-12-01

Forest canopies influence our climate through carbon, water and energy exchanges with the atmosphere. However, less investigated is whether and how tree canopies change the chemical composition of precipitation, with important implications on forest nutrient cycling. Recently, we provided for the first time isotopic evidence that biological nitrification in tree canopies was responsible for significant changes in the amount of nitrate from rainfall to throughfall across two UK forests at high nitrogen (N) deposition [1]. This finding strongly suggested that bacteria and/or Archaea species of the phyllosphere are responsible for transforming atmospheric N before it reaches the soil. Despite microbial epiphytes representing an important component of tree canopies, attention has been mostly directed to their role as pathogens, while we still do not know whether and how they affect nutrient cycling. Our study aims to 1) characterize microbial communities harboured in tree canopies for two of the most dominant species in Europe (Fagus sylvatica L. and Pinus sylvestris L.) using metagenomic techniques, 2) quantify the functional genes related to nitrification but also to denitrification and N fixation, and 3) estimate the contribution of NO3 derived from biological canopy nitrification vs. atmospheric NO3 input by using δ15N, δ18O and δ17O of NO3in forest water. We considered i) twelve sites included in the EU ICP long term intensive forest monitoring network, chosen along a climate and nitrogen deposition gradient, spanning from Fennoscandia to the Mediterranean and ii) a manipulation experiment where N mist treatments were carried out either to the soil or over tree canopies. We will present preliminary results regarding microbial diversity in the phyllosphere, water (rainfall and throughfall) and soil samples over the gradient. Furthermore, we will report differences between the two investigated tree species for the phyllosphere core microbiome in terms of relative abundance of bacterial and Archaea classes and those species related to N cycling. Finally we will assess whether there are differences among tree species and sites in the number of functional genes related to N cycling and how they are related to the N deposition and/or climate. [1] Guerrieri et al. 2015 Global Change and Biology 21 (12): 4613-4626.

Preliminary Estimate of Earthworm Abundance and Species Richness in Spathodea campanulata Beauv. Forests in Northern Puerto Rico

Treesearch

ARIEL E. LUGO; OSCAR J. ABELLEIRA; SONIA BORGES; LAUREN J. COLÓN; SYNDI MELÉNDEZ; MARIELA A. RODRÍGUEZ

2006-01-01

The alien tree species Spathodea campanulata forms monodominant stands in abandoned agricultural lands in Puerto Rico. In July 2005, we excavated three replicate randomly located soil pits (25 by 25 by 30 cm) in each of six stands of Spathodea. Three of the stands were located in the moist alluvial geoclimatic zone and three were in the moist karst geoclimatic zone,...

Mine-Detecting Canines

DTIC Science & Technology

1977-09-01

species and orders of animals were considered, and several types were selected for preliminary tests at Southwest Research Institute (SRI), Sanl Antonio...character. Figures 1 and 2 give an overview of the test area. The Wisconsin Driftless Area, in general, is partly covered with a fine, humus soil, but...elevation along the southern border. Trees (scrub oak) were scattered over most of the area with somne parts characterized as thickets. Other parts of the

Development of annualized diameter and height growth equations for red alder: preliminary results.

Treesearch

Aaron Weiskittel; Sean M. Garber; Greg Johnson; Doug Maguire; Robert A. Monserud

2006-01-01

Most individual-tree based growth and yield models use a 5- to 10-year time step, which can make projections for a fast-growing species like red alder quite difficult. Further, it is rather cumbersome to simulate the effects of intensive silvicultural treatments such as thinning or pruning on a time step longer than one year given the highly dynamic nature of growth...

Nonparametric analysis of Minnesota spruce and aspen tree data and LANDSAT data

NASA Technical Reports Server (NTRS)

Scott, D. W.; Jee, R.

1984-01-01

The application of nonparametric methods in data-intensive problems faced by NASA is described. The theoretical development of efficient multivariate density estimators and the novel use of color graphics workstations are reviewed. The use of nonparametric density estimates for data representation and for Bayesian classification are described and illustrated. Progress in building a data analysis system in a workstation environment is reviewed and preliminary runs presented.

Agricultural interventions for water saving and crop yield improvement, in a Mediterranean area - an experimental design

NASA Astrophysics Data System (ADS)

Morianou, Giasemi; Kourgialas, Nektarios; Psarras, George; Koubouris, George; Arampatzis, George; Karatzas, George; Pavlidou, Elisavet

2017-04-01

This work is a part of LIFE+ AGROCLIMAWATER project and the aim is to improve the water efficiency, increase the adaptive capacity of tree corps and save water, in a Mediterranean area, under different climatic conditions and agricultural practices. The experimental design as well as preliminary results at farm and river basin scales are presented in this work. Specifically, ten (10) pilot farms, both organic and conventional ones have been selected in the sub-basin of Platanias in western Crete - Greece. These ten pilot farms were selected representing the most typical crops in Platanias area (olive trees and citrus trees), as well as the typical soil, landscape and agricultural practices differentiation for each crop (field slope, water availability, soil type, management regime). From the ten pilot farms, eight were olive farms and the rest two citrus. This proportion correspond adequacy to the presentence of olive and citrus crops in the extended area of Platanias prefecture. Each of the ten pilot farm has been divided in two parts, the first one will be used as a control part, while the other one as the demonstration part where the interventions will be applied. The action plans for each selected farm are based on the following groups of possible interventions: a) reduction of water evaporation losses from soil surface, b) reduction of transpiration water losses through winter pruning and summer pruning, c) reduction of deep percolation water and nutrient losses, d) reduction of surface runoff, e) measures in order to maximize the efficiency of irrigation and f) rationalization of fertilizers and agrochemicals utilized. Preliminary results indicate that water saving and crop yield can be significantly improved based on the above innervations both at farm and river basin scale.

On the relationship between boreal forest browning and tree mortality: insights from Alaska

NASA Astrophysics Data System (ADS)

Rogers, B. M.; Goetz, S. J.

2015-12-01

Long-term satellite measurements of vegetation productivity in high-latitude environments have revealed profound and widespread responses to climate warming. Although warmer and longer summers are causing the Arctic to "green", many regions of boreal forest are showing the opposite response, particularly since the mid 1990s. This "browning" phenomenon was generally unexpected at the time of discovery, is not captured by global models, and may have profound consequences for the boreal biome. A number of studies have linked satellite-based browning trends to tree productivity through tree rings. However, our understanding of the environmental controls and ecosystem consequences of browning remains remarkably limited. Here we examine to what extent browning patterns are related to a fundamental demographic process: tree mortality. We focus on a long-term inventory database in Alaska to characterize mortality events and trends from 1994 to 2014. These patterns were related to vegetation productivity indices from MODIS and the AVHRR-based GIMMS3g data set. We explore three central hypotheses: (1) mortality events are likely to be preceded by 5-10 year browning trends ("press stress"), (2) mortality events are likely to be preceded by distinct pulses of low productivity ("pulse stress"), and (3) long-term trends in mortality are related to long-term browning. Within our study region, which encompasses eastern Alaskan from the Pacific coastal mountains up through the interior, we find strong evidence for the first two hypotheses. The third is weakly supported, which may be a consequence of the episodic nature of mortality in the region. However, preliminary analyses in the southern Canadian boreal reveal a markedly stronger relationship between long-term mortality and browning. Taken together, our study suggests a robust correlation between satellite-based metrics of productivity and forest demography; one that has consequences for forest composition, carbon stocks, and early signs of a biome shift in boreal forests.

A new method of tree xylem water extraction for isotopic analysis

NASA Astrophysics Data System (ADS)

Gierke, C.; Newton, B. T.

2011-12-01

The Sacramento Mountain Watershed Study in the southern Sacramento Mountains of New Mexico is designed to assess the forest restoration technique of tree thinning in mountain watersheds as an effective method of increasing local and regional groundwater recharge. The project is using a soil water balance approach to quantify the partitioning of local precipitation within this watershed before and after thinning trees. Understanding what sources trees extract their water from (e.g. shallow groundwater, unsaturated fractured bedrock, and soils) is difficult due to a complex hydrologic system and heterogeneous distribution of soil thicknesses. However, in order to accurately quantify the soil water balance and to assess how thinning trees will affect this water balance, it is important determine the sources from which trees extract their water. We plan to use oxygen and hydrogen stable isotopic analysis of various end member waters to identify these different sources. We are in the process of developing a new method of determining the isotopic composition of tree water that has several advantages over conventional methods. Within the tree there is the xylem which transports water from the roots to the leaves and the phloem which transports starches and sugars in a water media throughout the tree. Previous studies have shown that the isotopic composition of xylem water accurately reflects that of source water, while phloem water has undergone isotopic fractionation during photosynthesis and metabolism. The distillation of water from twigs, which is often used to extract tree water for isotopic analysis, is very labor intensive. Other disadvantages to distillation methods include possible fractionation due to phase changes and the possible extraction of fractionated phloem waters. Employing a new mixing method, the composition of the twig water (TW) can be determined by putting twigs of unknown isotopic water composition into waters of known compositions or initial waters (IW), allowing diffusive processes to proceed to equilibrium, measuring the composition of the resulting mixture or final water (FW) then, solving a simple mixing equation. To evaluate this method, we collected several twig samples from Douglas Firs in the Sacramento Mountains. Twig water was prepared for isotopic analysis both by cryogenic distillation and the mixing method. Soil in close proximity to these trees was also sampled and water was extracted by cryogenic distillation. Preliminary results show that the isotopic composition of distilled twig water and soil waters plot to the right of the local meteoric water line (LMWL) suggesting that trees are extracting shallow evaporated soil water. Twig water obtained from the mixing method plot near the LMWL within the range expected for local snow melt, suggesting a possibly deeper non-evaporated source. In general, distillation values are approximately 4% heavier with respect to delta 18O than waters obtained from the mixing method. It is possible that this difference is due to the contribution of the fractionated water of the twig phloem that is released during the distillation process. This difference is quite significant and can lead to very different interpretations. These results are being addressed with additional experiments.

Investigating the Relationships between Canopy Characteristics and Snow Depth Distribution at Fine Scales: Preliminary Results from the SnowEX TLS Campaign

NASA Astrophysics Data System (ADS)

Glenn, N. F.; Uhlmann, Z.; Spaete, L.; Tennant, C.; Hiemstra, C. A.; McNamara, J.

2017-12-01

Predicting changes in forested seasonal snowpacks under altered climate scenarios is one of the most pressing hydrologic challenges facing today's society. Airborne- and satellite-based remote sensing methods hold the potential to transform measurements of terrestrial water stores in snowpack, improve process representations of snowpack accumulation and ablation, and to generate high quality predictions that inform potential strategies to better manage water resources. While the effects of forest on snowpack are well documented, many of the fine-scale processes influenced by the forest-canopy are not directly accounted for because most snow models don't explicitly represent canopy structure and canopy heterogeneity. This study investigates the influence of forest canopy on snowpack distribution at fine scales and quantifies the influence of canopy heterogeneity on snowpack accumulation and ablation processes. We use terrestrial laser scanning (TLS) data collected during the SnowEX campaign to discover how the relationships between canopy and snow distributions change across scales. Our sample scales range from individual trees to patches of trees across the Grand Mesa, CO, SnowEx site.

Impact of Climate Variability on Forest Dynamics in Eastern Amazon: the Role of Large-Scale Droughts, Local Droughts, and Other Disturbances

NASA Astrophysics Data System (ADS)

Longo, M.; Hayek, M.; Alves, L. F.; Bonal, D.; Camargo, P. B.; Restrepo-Coupe, N.; Fitzjarrald, D. R.; Knox, R. G.; Saleska, S. R.; da Silva, R.; Stark, S.; Tapajos, R.; Wiedemann, K. T.; Moorcroft, P. R.; Wofsy, S. C.

2012-12-01

Droughts in the Amazon - especially in the southern and eastern regions - are likely to become more frequent and severe with climate change, potentially resulting in significant losses of biomass. Therefore, understanding the ecosystem response to past events, such as the major Amazonian drought of 2005, is fundamental to forecast the ecosystem resilience to extreme droughts in case they become more frequent. In this study we evaluate whether and how large-scale droughts affected the forest dynamics both in terms of productivity and in mortality, and what is the relative contribution of other factors, such as windthrow and smaller local droughts, to explain the observed dynamics. We focus on two sites in Eastern Amazon: Tapajos National Forest near Santarem, Brazil (S67), and Guyaflux tower at Paracou Field Station in French Guiana (GYF). We analyzed site-level observations from eddy flux towers, biometric measurements, and simulated the environment with the Ecosystem Demography Model, version 2 (ED2). This model has the advantage to represent the forest structure in size and functional type, and also biophysical processes within and above canopy, making comparisons with observations more direct. Preliminary results indicate that while the large-scale 2005 drought influenced productivity at both sites, local droughts and windthrow had also a significant contribution to the variation in productivity and mortality rates. Mortality in S67 increased significantly between 2005 and 2007, and was slightly higher in GYF between 2006 and 2008. In both cases, however, higher incidence of uprooted and broken trees suggests a significant contribution from windthrow to mortality. In S67, preliminary simulations using ED2 indicate that water stress reduced productivity during a local but severe drought at the end of 2006, followed by an increase in mortality particularly among trees with diameter at breast height less than 35 cm and early successional trees. In GYF, both ED2 and observations show decline in productivity late in the 2008 dry season, which was longer and drier than average, although the impact on mortality was negligible.

Identification of molecular performance from oil palm clones based on SSR markers

NASA Astrophysics Data System (ADS)

Putri, Lollie Agustina P.; Basyuni, M.; Bayu, Eva S.; Arvita, D.; Arifiyanto, D.; Syahputra, I.

2018-03-01

In Indonesia, the oil palms are an important economic crop, producing food and raw materials for the food, confectionary, cosmetics and oleo-chemical industrial demands of oil palm products. Clonal oil palm offers the potential for greater productivity because it is possible to establish uniform tree stands comprising identical copies (clones) of a limited number of highly productive oil palms. Unfortunately, tissue culture sometimes accentuates the expression of detects in oil palm, particularly when embryogenesis is induced in particullar callus for prolonged periods. This research is conducted by taking individual tree sample of clone germplasm two years old. The purpose of this research is to molecular performance analysis of some oil palm clones based on SSR markers. A total of 30 trees oil palm clones were used for analysis. In this experiment, the DNA profile diversity was assessed using five loci of oil palm’s specific SSR markers. The results of the experiment indicated out of 3 SSR markers (FR-0779, FR-3663 and FR-0782) showed monomorphic of PCR product and 2 SSR markers (FR-0783 and FR- 3745) showed polymorphic of PCR product. There are 10 total number of PCR product. These preliminary results demonstrated SSR marker can be used to evaluate genetic relatedness among trees of oil palm clones.

Evaluating the predictability of distance race performance in NCAA cross country and track and field from high school race times in the United States.

PubMed

Brusa, Jamie L

2017-12-30

Successful recruiting for collegiate track & field athletes has become a more competitive and essential component of coaching. This study aims to determine the relationship between race performances of distance runners at the United States high school and National Collegiate Athletic Association (NCAA) levels. Conditional inference classification tree models were built and analysed to predict the probability that runners would qualify for the NCAA Division I National Cross Country Meet and/or the East or West NCAA Division I Outdoor Track & Field Preliminary Round based on their high school race times in the 800 m, 1600 m, and 3200 m. Prediction accuracies of the classification trees ranged from 60.0 to 76.6 percent. The models produced the most reliable estimates for predicting qualifiers in cross country, the 1500 m, and the 800 m for females and cross country, the 5000 m, and the 800 m for males. NCAA track & field coaches can use the results from this study as a guideline for recruiting decisions. Additionally, future studies can apply the methodological foundations of this research to predicting race performances set at different metrics, such as national meets in other countries or Olympic qualifications, from previous race data.

Preliminary technology utilization assessment of the robotic fruit harvester

NASA Technical Reports Server (NTRS)

Wilhelm, J.

1982-01-01

The results of an analysis whose purpose was to examine the history and progress of mechanical fruit harvesting, to determine the significance of a robotic fruit tree harvester and to assess the available market for such a product are summarized. Background information that can be used in determining the benefit of a proof of principle demonstration is provided. Such a demonstration could be a major step toward the transfer of this NASA technology.

Seasonality and Disturbance Events in the Carbon Isotope Record of Slash Pine (Pinus elliottii) Tree Rings from Big Pine Key, Florida

NASA Astrophysics Data System (ADS)

Rebenack, C.; Anderson, W. T.; Cherubini, P.

2011-12-01

The South Florida coastal ecosystem is among the world's subtropical coastlines which are threatened by the potential effects of climate change. A well-developed localized paleohistory is essential in the understanding of the role climate variability/change has on both hydrological dynamics and disturbance event frequency and intensity; this understanding can then aid in the development of better predictive models. High resolution paleoclimate proxies, such as those developed from tree-ring archives, may be useful tools for extrapolating actual climate trends over time from the overlapping long-term and short-term climate cycles, such as the Atlantic Multidecadal Oscillation (AMO) and the El Niño-Southern Oscillation (ENSO). In South Florida, both the AMO and ENSO strongly influence seasonal precipitation, and a more complete grasp of how these cycles have affected the region in the past could be applied to future freshwater management practices. Dendrochronology records for the terrestrial subtropics, including South Florida, are sparse because seasonality for this region is precipitation driven; this is in contrast to the drastic temperature changes experienced in the temperate latitudes. Subtropical seasonality may lead to the complete lack of visible rings or to the formation of ring structures that may or may not represent annual growth. Fortunately, it has recently been demonstrated that Pinus elliottii trees in South Florida produce distinct annual growth rings; however ring width was not found to significantly correlate with either the AMO or ENSO. Dendrochronology studies may be taken a step beyond the physical tree-ring proxies by using the carbon isotope ratios to infer information about physiological controls and environmental factors that affect the distribution of isotopes within the plant. It has been well established that the stable isotope composition of cellulose can be related to precipitation, drought, large-scale ocean/atmospheric oscillations, and disturbance events. Because slash pine growth is dependent on water availability, a chronology developed using carbon isotopes may provide greater insight into plant stress over time and ultimately may lead to better correlations with climate oscillations. The work presented here is the preliminary result of a carbon-isotope study of four slash pine trees from Big Pine Key, Florida. Initial δ13C data show seasonal stomatal activity in the trees and indicate the timing of possible disturbance events.

Semantic segmentation of forest stands of pure species combining airborne lidar data and very high resolution multispectral imagery

NASA Astrophysics Data System (ADS)

Dechesne, Clément; Mallet, Clément; Le Bris, Arnaud; Gouet-Brunet, Valérie

2017-04-01

Forest stands are the basic units for forest inventory and mapping. Stands are defined as large forested areas (e.g., ⩾ 2 ha) of homogeneous tree species composition and age. Their accurate delineation is usually performed by human operators through visual analysis of very high resolution (VHR) infra-red images. This task is tedious, highly time consuming, and should be automated for scalability and efficient updating purposes. In this paper, a method based on the fusion of airborne lidar data and VHR multispectral images is proposed for the automatic delineation of forest stands containing one dominant species (purity superior to 75%). This is the key preliminary task for forest land-cover database update. The multispectral images give information about the tree species whereas 3D lidar point clouds provide geometric information on the trees and allow their individual extraction. Multi-modal features are computed, both at pixel and object levels: the objects are individual trees extracted from lidar data. A supervised classification is then performed at the object level in order to coarsely discriminate the existing tree species in each area of interest. The classification results are further processed to obtain homogeneous areas with smooth borders by employing an energy minimum framework, where additional constraints are joined to form the energy function. The experimental results show that the proposed method provides very satisfactory results both in terms of stand labeling and delineation (overall accuracy ranges between 84 % and 99 %).

Office of Legacy Management Decision Tree for Solar Photovoltaic Projects - 13317

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elmer, John; Butherus, Michael; Barr, Deborah L.

2013-07-01

To support consideration of renewable energy power development as a land reuse option, the DOE Office of Legacy Management (LM) and the National Renewable Energy Laboratory (NREL) established a partnership to conduct an assessment of wind and solar renewable energy resources on LM lands. From a solar capacity perspective, the larger sites in the western United States present opportunities for constructing solar photovoltaic (PV) projects. A detailed analysis and preliminary plan was developed for three large sites in New Mexico, assessing the costs, the conceptual layout of a PV system, and the electric utility interconnection process. As a result ofmore » the study, a 1,214-hectare (3,000-acre) site near Grants, New Mexico, was chosen for further study. The state incentives, utility connection process, and transmission line capacity were key factors in assessing the feasibility of the project. LM's Durango, Colorado, Disposal Site was also chosen for consideration because the uranium mill tailings disposal cell is on a hillside facing south, transmission lines cross the property, and the community was very supportive of the project. LM worked with the regulators to demonstrate that the disposal cell's long-term performance would not be impacted by the installation of a PV solar system. A number of LM-unique issues were resolved in making the site available for a private party to lease a portion of the site for a solar PV project. A lease was awarded in September 2012. Using a solar decision tree that was developed and launched by the EPA and NREL, LM has modified and expanded the decision tree structure to address the unique aspects and challenges faced by LM on its multiple sites. The LM solar decision tree covers factors such as land ownership, usable acreage, financial viability of the project, stakeholder involvement, and transmission line capacity. As additional sites are transferred to LM in the future, the decision tree will assist in determining whether a solar PV project is feasible on the new sites. (authors)« less

Capability of ERTS-1 imagery to investigate geological and structural features in a sedimentary basin (Bassin Parisien, France)

NASA Technical Reports Server (NTRS)

Cavelier, C.; Scanvic, J. Y.; Weecksteen, G.; Zizerman, A.

1973-01-01

A preliminary study of the MSS imagery of a sedimentary basin whose structure is regular is reported. Crops and natural vegetation are distributed all over the site located under temperate climate. Ground data available concern plant species geology and tectonic and are correlated with results from ERTS 1 imagery. This comparison shows a good correlation. The main geological units are detected or enhanced by way of agricultural land use and/or natural vegetation. Alluvial deposits are outlined by vegetation grass land and poplar trees. Some spatial relationship of geostructures, suspected until now, are identified or extended in associating results from different spectral bands.

Ornamental Planting Restoration at Jefferson's Poplar Forest Through XRF and ICP-OES Analysis of Disturbed Soils

NASA Astrophysics Data System (ADS)

Hatfield, M.; Low, P. C.; Devlin, S.

2011-12-01

Thomas Jefferson's Poplar Forest estate near Lynchburg, VA is currently attempting to restore the property to its Jeffersonian condition. Subsequent modifications to the property following its sale by Jefferson's heirs included the removal of the original trees in order to facilitate agricultural activity. One key facet of the restoration involves determining the precise location of the sixty-four paper mulberry trees that Jefferson reportedly had transplanted in 1815 from his on-site nursery to near the main house. At Monticello, it is well-documented that Jefferson used contextually innovative fertilizing techniques, including the addition of gypsum and lime "to restore the exhaustion of a single crop from the soil." Whether he used these methods in the nursery at Poplar Forest to the degree that decades of subsequent leaching, weathering, and other disturbances would not erase remains historically and analytically unclear. Since the transplantation process requires that large amounts of soil be moved with the trees, small areas of compositionally distinct soils in the suspected planting area could be used to establish the exact location of each tree through differentiating between nursery and in situ soils. Through X-ray fluorescence spectroscopy (XRF) and intercoupled plasma optical emission spectroscopy (ICP-OES) geochemical analysis, the specific composition of soil can be determined. Preliminary analysis shows slight differences in phosphorus and sulfur between the nursery and in situ soil; however, the property lies on three different distinct geological units: actinolite schist and feldspathic metagreywacke units of the Alligator Back formation, and biotite gneiss of the Ashe Formation (biotite gneiss). The location of the nursery where the sixty-four paper mulberry trees were originally grown lies on the feldspathic metagreywacke unit; whereas the relocation site where Jefferson had them planted rests on the actinolite schist unit. Percursory study identifies significant differences in major elements such as silicon, aluminum, calcium, and manganese. Locating the presence of the nursery soil within the relocation site soil will allow staff archaeologists to replant the paper mulberry trees in order to reconstruct Jefferson's plantation.

Impacts of Alien Tree Invasion on Evapotranspiration in Tropical Montane Cloud Forest in Hawai'i

NASA Astrophysics Data System (ADS)

Giambelluca, T. W.; Asner, G. P.; Martin, R. E.; Nullet, M. M.; Huang, M.; Delay, J. K.; Mudd, R. G.; Takahashi, M.

2007-12-01

Hawaiian tropical montane cloud forests (TMCFs) are ecologically and hydrologically valuable zones. TMCFs in Hawai'i serve as refugia for the remaining intact native terrestrial plant and animal ecosystems, and are major sources of hydrologic input to surface water and groundwater systems. Invasion of alien tree species, with obvious effects on the ecological integrity of TMCFs, also threatens to impact the hydrological services these forests provide. Much speculation has been made about the hydrological effects of replacing native forest tree species with alien trees in Hawai'i, but until now no measurements have been made to test these assertions. We established two study sites, each equipped with eddy covariance and other micrometeorological instrumentation, one within native Metrosideros polymorpha forest and the other at a site heavily invaded by Psidium cattleianum, in the cloud forest zone of Hawai'i Volcanoes National Park. We are conducting measurements of stand-level evapotranspiration, transpiration (using sapflow techniques), energy balance, throughfall, stemflow, and soil moisture at each site. Preliminary analysis of these measurements shows that the fraction of available energy used for evapotranspiration (ET Fraction) at the native site is much higher for wet canopy conditions. The ET Fraction at the native site has an annual cycle corresponding to the annual cycle in leaf area. Deviations from the annual cycle are more closely related to variations in canopy wetness than to variations in soil moisture. Overall, ET as a function of available energy is 27% higher at the invaded site than the native site. The difference in ET between the two sites is especially pronounced during dry canopy periods, during which the ET Fraction is 53% higher at the invaded site than the native site. Sapflow measurements using heat balance collars show that leaf-area-specific transpiration is much greater in invasive P. cattleianum trees than in remnant native M. polymorpha trees at the invaded site. These results indicate that the P. cattleianum invasion is altering the hydrological cycle of the TMCF where it is found, with potential significant negative consequences for island water supply.

The Forest Canopy as a Temporally and Spatially Dynamic Ecosystem: Preliminary Results of Biomass Scaling and Habitat Use from a Case Study in Large Eastern White Pines (Pinus Strobus)

NASA Astrophysics Data System (ADS)

Martin, J.; Laughlin, M. M.; Olson, E.

2017-12-01

Canopy processes can be viewed at many scales and through many lenses. Fundamentally, we may wish to start by treating each canopy as a unique surface, an ecosystem unto itself. By doing so, we can may make some important observations that greatly influence our ability to scale canopies to landscape, regional and global scales. This work summarizes an ongoing endeavor to quantify various canopy level processes on individual old and large Eastern white pine trees (Pinus strobus). Our work shows that these canopies contain complex structures that vary with height and as the tree ages. This phenomenon complicates the allometric scaling of these large trees using standard methods, but detailed measurements from within the canopy provided a method to constrain scaling equations. We also quantified how these canopies change and respond to canopy disturbance, and documented disproportionate variation of growth compared to the lower stem as the trees develop. Additionally, the complex shape and surface area allow these canopies to act like ecosystems themselves; despite being relatively young and more commonplace when compared to the more notable canopies of the tropics and the Pacific Northwestern US. The white pines of these relatively simple, near boreal forests appear to house various species including many lichens. The lichen species can cover significant portions of the canopy surface area (which may be only 25 to 50 years old) and are a sizable source of potential nitrogen additions to the soils below, as well as a modulator to hydrologic cycles by holding significant amounts of precipitation. Lastly, the combined complex surface area and focused verticality offers important habitat to numerous animal species, some of which are quite surprising.

Population biology of the European woodwasp, Sirex noctilio, in Galicia, Spain.

PubMed

Lombardero, M J; Ayres, M P; Krivak-Tetley, F E; Fitza, K N E

2016-10-01

Sirex noctilio Fabricius (Hymenoptera, Siricidae) is rare and rarely studied where it is native in Eurasia, but is a widespread pest of pines in the Southern Hemisphere. Here we report on the abundance, basic biology, host use patterns and natural enemies of native S. noctilio in Galicia, Spain. Most trees attacked by S. noctilio failed to produce any adult progeny: >90% of emergences came from <20% of the attacked trees. The highest reproduction was in Pinus pinaster, followed by Pinus sylvestris and Pinus radiata. The proportions of S. noctilio requiring 1, 2 or 3 years for development were 0.72: 0.24: 0.04. Delayed development could be an adaptation to avoid parasitic nematodes, which sterilized 41.5% adults with one year generation time but only 19% of adults with 2 years generation time. Hymenoptera parasitoids accounted for 20% mortality. Sex ratios were male biased at 1: 2.9. Body size and fecundity were highly variable and lower than previously reported from the Southern Hemisphere. On attacked trees, there were 5-20 attacks per standard log (18 dm2), with usually 1-3 drills per attack. Attack densities and drills per attack were higher in trees that subsequently died. The production of S. noctilio per log was positively related to total attacks, and negatively related to: (1) attack density, (2) incidence of blue stain from Ophiostoma fungi and (3) frequency of lesions in plant tissue around points of attack. A preliminary life table for S. noctilio in Galicia estimated effects on potential population growth rate from (in decreasing order of importance) host suitability, unequal sex ratio, parasitic nematodes and Hymenoptera parasitoids.

Effect of simulated monsoon failure on the carbon balance of mountain forests, Bhutan, eastern Himalayas

NASA Astrophysics Data System (ADS)

Wangdi, Norbu; Ahmed, Iftekhar; Zangmo, Norbu; Gratzer, Georg; Jandl, Robert; Schindlbacher, Andreas

2017-04-01

Extreme climatic events leading to severe disturbances in ecosystems are expected to increase globally. Such events carry strong potentials for severe reductions or whole losses of ecosystem services. This is particularly true for the Himalayas: they are located in a region forming a tipping element in the Earth's climate system. At a millennial time scale, complete breakdowns of the summer monsoon circulation and a resulting failure of the Indian summer monsoon rains have occurred several times during the last 1000 years. Climate change potentially increases the frequency of such monsoon failures and related mega-droughts. Given the significance of the region, the knowledge on the effects of climate change on forest ecosystem C dynamics is strikingly limited. While the effects of droughts are studied experimentally in Europe and North America, no precipitation manipulation experiments have been carried out in the Himalayas yet. We make use of natural forests with coexisting conifer and broadleaf as well as deciduous and evergreen species at slopes of stark environmental gradients for conducting a replicated large-scale five year throughfall exclosure experiment. We study drought response at individual tree and ecosystem levels. We present the effects of the experimental drought on the ecosystem carbon balance, integrating above- and belowground pools and fluxes such as heterotrophic and autotrophic soil respiration, litter fall and root turnover as well as above- and belowground tree growth. A preliminary assessment indicates that soil microbes were primarily affected during the first three years of simulated drought, whereas trees altered allocation patterns but survived the experimental drought. A detailed analysis will be presented at the conference.

Preliminary measurements of spectral signatures of tropical and temperate plants in the thermal infrared

NASA Technical Reports Server (NTRS)

Salisbury, John W.; Milton, N. M.

1987-01-01

Spectral reflectance measurements of seven tropical species and six deciduous species were carried out in thermal infrared to establish the species-dependent spectral characteristics and to investigate the effect on spectral signatures of environmental variables, such as leaf maturity, drought, and metal stress. Seasonal variations of spectral signatures occurred between spring and summer leaves, but such variations were minimal during summer and early fall. Overall reflectance of senescent leaves was higher than that of young leaves, as was the reflectance of leaves from trees growing in metal-enriched soils, as compared with leaves from the control area. However, the characteristic spectral features were not changed in either case. It was also found that water stress did not have any effect on the infrared signatures: trees grown during a drought season maintained their characteristic spectral signatures.

Large Wood recruitment and transport along a piedmont gravel bed river

NASA Astrophysics Data System (ADS)

Picco, Lorenzo; Tonon, Alessia; Ravazzolo, Diego; Aristide Lenzi, Mario

2015-04-01

In recent years an increasing attention has been devoted on Large Wood (LW), focusing to its role and impact along riverine systems. However there is still a lack of knowledge about many aspects of its recruitment and displacement from the vegetated patches (e.g. floodplain and island) of a riverine environment. This research aims to analyse and consider the differences in LW recruitment during a flood event along a reach of a piedmont gravel bed river. The study has been carried out along a 3 km - long study reach located into the middle course of the gravel bed Piave River (North-Eastern Italian Alps). A buffer zone of 20 m - wide was considered along the floodplains and islands. Into this stripe every standing tree, with diameter ≥ 0.10 m, was measured manually (Diameter Breast Height-DBH; Height). Moreover, for each tree the GPS position was recorded and a numbered tag was installed to simplify the post event recovery. In November 2014 an over bankfull flood (Q=1039 m3 s-1; R.I=3.5 years) occurred. Preliminary results shows that 668 trees were recruited during the flood event thanks to both bank erosion processes along the floodplain banks and along the island shores. Analysing the origin, it is possible to define as 401 (60.03 %) trees were recruited from the floodplain, 244 (36.53%) from fluvial islands and, finally, 23 (3.44%) trees were not completely moved into the active channel area and recruited by the flood, but were just uprooted. Thanks to the accurate dendrometric measurements, it has been possible to define the dimensions for both category of LW, recruited from floodplain and island respectively. Looking to the minimum, maximum and mean height detected were defined values of 2.00, 20.00 and 8.98 m, and 2.20, 15.00 and 6.64 m, for floodplain and island, respectively. The DBH show minimum, maximum and mean values of about 0.10, 0.54 and 0.14 m, and 0.10, 0.44 and 0.14 m for floodplain and island, respectively. These dendrometric measurements permitted us to define the input volume of LW from floodplain and island, 75.59 m3 (0.19 m3/tree) and 39.66 m3 (0.16 m3/tree), respectively. It is worth to focus on the greater input of LW from floodplain, due to the recruitment of an higher number of trees and the bigger dimension of these plants. Post flood field survey permitted also to detect the displacement length of recruited trees along the study area, obtaining values of about 2.50 km, that is consistent with similar results obtained in the same study reach. Further analysis will permit to investigate more in detail the LW origin, its displacement and to link it with flood condition and the morphological settings of the study reach. This research is funded within, the University of Padova research Project CPDA149091- "WoodAlp: linking large Wood and morphological dynamics of gravel bed rivers of Eastern Italian Alps"- 2014-16 and the Project "SedAlp: sediment management in Alpine basins, integrating sediment continuum, risk mitigation and hydropower", 83-4-3-AT, in the framework of the European Territorial Cooperation Program "Alpine Space" 2007-13.

Tree-ring records of near-Younger Dryas time in central North America : preliminary results from the Lincoln Quarry site, central Illinois, USA

Treesearch

Irina P. Panyushkina; Steven W. Leavitt; Alex Wiedenhoeft; Sarah Noggle; Brandon Curry; Eric Grimm

2004-01-01

The abrupt millennial-scale changes associated with the Younger Dryas (YD) event (“chronozone”) near the dawn of the Holocene are at least hemispheric, if not global, in extent. Evidence for the YD cold excursion is abundant in Europe but fairly meager in central North America. We are engaged in an investigation of high-resolution environmental changes in mid-North...

An overview of the text propagation effects for land-mobile-satellite systems: Experimental and modeling results

NASA Technical Reports Server (NTRS)

Goldhirsh, Julius; Vogel, Wolfhard J.

1991-01-01

We present an overview of the contents of the text having the above title and which is now in the form of a preliminary document titled, 'Propagation Handbook for Land-Mobile-Satellite Systems-Preliminary.' At this writing the text is undergoing peer review, and the final revised manuscript will be published in the near future as a NASA document. The text was inspired by a series of Land-Mobile-Satellite System (LMSS) experiments by the authors and other investigators at UHF and L-Band. The rationale for its writing is to place in a single document an overview of the previous propagation related salient experimental and modeling results pertaining to LMSS scenarios. It is apparent that LMSS propagation at UHF and L-Band can be seriously degraded because of attenuation (e.g., greater than 10 dB) caused by roadside tree shadowing. The extent of attenuation is shown to depend on such factors at the elevation angle to the satellite, the bearing of the line-of-signt path to the satellite relative to the line of roadside trees, the side of the road in which the vehicle is driven, the season, and the frequency. Multipath effects during line-of-sight communications are shown to cause less serious fading (e.g., smaller than 3 dB for 90 percent of the driving distance).

Effects of rhododendron removal on the water use of hardwood species following eastern hemlock mortality

NASA Astrophysics Data System (ADS)

Hawthorne, S. N.; Miniat, C.; Elliott, K.

2017-12-01

Forest disturbance that alters vegetation species composition can affect ecosystem productivity and function. The loss of eastern hemlock (Tsuga canadensis) to hemlock woolly adelgid infestations in southern Appalachian Mountains has resulted in more than a two-fold increase in growth of co-occurring rhododendron (Rhododendron maximum) understory, evergreen shrubs. In contrast, the growth of hardwood species increased by 1.2 fold during the same 5 year period following infestation. This study examines the effects of mechanically removing the rhododendron shrub layer on water use and growth of hardwood species. The treatment—hypothesized to speed ecosystem recovery of structure and function—involved cutting, spreading and burning rhododendron stems to remove both rhododendron and soil O-horizon. Sap flow, soil moisture and micro-climate (humidity, temperature) were measured in a pair of reference and treated plots. Preliminary results from the relatively dry summer/fall 2016 have shown that the mean daily transpiration (Et) of the treated plot was 24% greater than the mean daily Et of hardwood trees in the reference plot (t-test, p < 0.05). Light incident onto the forest floor doubled in the treatment plots compared to the reference plots. This suggests that the removal of the shrub layer reduced competition for resources for the canopy and seedling trees, which may increase tree growth and recruitment. Thus, in the wake of hemlock loss, recovery of riparian forest structure and function may be aided with shrub layer removal.

How Do Trees Know When to Flower? Predicting Reproductive Phenology of Douglas-fir with Changing Winter and Spring Temperatures

NASA Astrophysics Data System (ADS)

Prevey, J.; St Clair, B.; Harrington, C.

2016-12-01

Flowering at the right time is one of the primary ways that plants are adapted to their environment. Trees that flower too early risk cold damage to vulnerable new tissues and those that flower too late miss peak resources or may mistime flowering to coincide with other trees, altering outcrossing rates and gene flow. Past observations indicate that temperature cues over winter and spring influence the timing of flowering in many tree species. Understanding these cues is important for predicting how flowering phenology of trees will change with a changing climate.We developed predictive models of flowering for Douglas-fir, an abundant and commercially important tree in the Pacific Northwest. We assembled over 10,000 flowering observations of trees from 11 sites across western Oregon and Washington. We modeled the dates of flowering using hourly temperature data; our models of flowering were adapted from previous models of vegetative budburst and height growth initiation developed for Douglas-fir. Preliminary results show that both chilling (cold) and forcing (warm) temperatures over winter and spring are important determinants of flowering time for Douglas-fir. This suggests that as spring temperatures warm in the future, Douglas-fir across the Pacific Northwest will flower earlier, unless plants experience insufficient chilling over winter, in which case it is possible that Douglas-fir may flower later than in the past, or not flower at all. At one site, Douglas-fir genotypes from different geographic regions flowered in the same order from year to year, indicating that both temperature and heredity influence flowering. Knowledge of the environmental and genetic cues that drive the timing of flowering can help predict how changes in temperature under various climate models could change flowering time across sites. These models may also indicate the geographic areas where future climate could enhance or reduce flowering of Douglas-fir in the future.

Efficient Encoding and Rendering of Time-Varying Volume Data

NASA Technical Reports Server (NTRS)

Ma, Kwan-Liu; Smith, Diann; Shih, Ming-Yun; Shen, Han-Wei

1998-01-01

Visualization of time-varying volumetric data sets, which may be obtained from numerical simulations or sensing instruments, provides scientists insights into the detailed dynamics of the phenomenon under study. This paper describes a coherent solution based on quantization, coupled with octree and difference encoding for visualizing time-varying volumetric data. Quantization is used to attain voxel-level compression and may have a significant influence on the performance of the subsequent encoding and visualization steps. Octree encoding is used for spatial domain compression, and difference encoding for temporal domain compression. In essence, neighboring voxels may be fused into macro voxels if they have similar values, and subtrees at consecutive time steps may be merged if they are identical. The software rendering process is tailored according to the tree structures and the volume visualization process. With the tree representation, selective rendering may be performed very efficiently. Additionally, the I/O costs are reduced. With these combined savings, a higher level of user interactivity is achieved. We have studied a variety of time-varying volume datasets, performed encoding based on data statistics, and optimized the rendering calculations wherever possible. Preliminary tests on workstations have shown in many cases tremendous reduction by as high as 90% in both storage space and inter-frame delay.

Heavy-metal-contaminated industrial soil: Uptake assessment in native plant species from Brazilian Cerrado.

PubMed

Meyer, Sylvia Therese; Castro, Samuel Rodrigues; Fernandes, Marcus Manoel; Soares, Aylton Carlos; de Souza Freitas, Guilherme Augusto; Ribeiro, Edvan

2016-08-02

Plants of the Cerrado have shown some potential for restoration and/or phytoremediation projects due to their ability to grow in and tolerate acidic soils rich in metals. The aim of this study is to evaluate the tolerance and accumulation of metals (Cd, Cu, Pb, and Zn) in five native tree species of the Brazilian Cerrado (Copaifera langsdorffii, Eugenia dysenterica, Inga laurina, Cedrela fissilis, Handroanthus impetiginosus) subjected to three experiments with contaminated soils obtained from a zinc processing industry (S1, S2, S3) and control soil (S0). The experimental design was completely randomized (factorial 5 × 4 × 3) and conducted in a greenhouse environment during a 90-day experimentation time. The plant species behavior was assessed by visual symptoms of toxicity, tolerance index (TI), translocation factor (TF), and bioaccumulation factor (BF). C. fissilis has performed as a Zn accumulator by the higher BFs obtained in the experiments, equal to 3.72, 0.88, and 0.41 for S1, S2, and S3 respectively. This species had some ability of uptake control as a defense mechanism in high stress conditions with the best behavior for phytoremediation and high tolerance to contamination. With economical and technical benefits, this study may support a preliminary analysis necessary for using native tree species in environmental projects.

CAN A MODEL TRANSFERABILITY FRAMEWORK IMPROVE ...

EPA Pesticide Factsheets

Budget constraints and policies that limit primary data collection have fueled a practice of transferring estimates (or models to generate estimates) of ecological endpoints from sites where primary data exists to sites where little to no primary data were collected. Whereas benefit transfer has been well studied; there is no comparable framework for evaluating whether model transfer between sites is justifiable. We developed and applied a transferability assessment framework to a case study involving forest carbon sequestration for soils in Tillamook Bay, Oregon. The carbon sequestration capacity of forested watersheds is an important ecosystem service in the effort to reduce atmospheric greenhouse gas emissions. We used our framework, incorporating three basic steps (model selection, defining context variables, assessing logistical constraints) for evaluating model transferability, to compare estimates of carbon storage capacity derived from two models, COMET-Farm and Yasso. We applied each model to Tillamook Bay and compared results to data extracted from the Soil Survey Geographic Database (SSURGO) using ArcGIS. Context variables considered were: geographic proximity to Tillamook, dominant tree species, climate and soil type. Preliminary analyses showed that estimates from COMET-Farm were more similar to SSURGO data, likely because model context variables (e.g. proximity to Tillamook and dominant tree species) were identical to those in Tillamook. In contras

Novel strategy for the determination of illegal adulterants in health foods and herbal medicines using high-performance liquid chromatography with high-resolution mass spectrometry.

PubMed

Wang, Zhe; Wu, Caisheng; Wang, Gangli; Zhang, Qingsheng; Zhang, Jinlan

2015-03-01

The detection, confirmation, and quantification of multiple illegal adulterants in health foods and herbal medicines by using a single analytical method are a challenge. This paper reports on a new strategy to meet this challenge by employing high-performance liquid chromatography coupled with high-resolution mass spectrometry and a mass spectral tree similarity filter technique. This analytical method can rapidly collect high-resolution, high-accuracy, optionally multistage mass data for compounds in samples. After a preliminary screening by retention time and high-resolution mass spectral data, known illegal adulterants can be detected. The mass spectral tree similarity filter technique has been applied to rapidly confirm these adulterants and simultaneously discover unknown ones. By using full-scan mass spectra as stem and data-dependent subsequent stage mass spectra to form branches, mass spectrometry data from detected compounds are converted into mass spectral trees. The known or unknown illegal adulterants in the samples are confirmed or discovered based on the similarity between their mass spectral trees and those of the references in a library, and they are finally quantified against standard curves. This new strategy has been tested by using 50 samples, and the illegal adulterants were rapidly and effectively detected, confirmed and quantified. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Landscape heterogeneity modulates forest sensitivity to climate

NASA Astrophysics Data System (ADS)

Jencso, Kelsey; Hu, Jia; Hoylman, Zachary

2015-04-01

Elevation dependent snowmelt magnitude and timing strongly influences net ecosystem productivity in forested mountain watersheds. However, previous work has provided little insight into how internal watershed topography and organization may modulate plant available water and forest growth across elevation gradients. We collected 800 tree cores from four coniferous tree species across a range of elevation, topographic positions and aspects in the Lubrecht Experimental Forest, Montana, USA. We compared the annual basal area increment growth rate to precipitation and temperature from a 60-year SNOTEL data record, groundwater and soil moisture data in sideslope and hollow positions, and topographic indices derived from a LiDAR digital elevation model. At the watershed scale, we evaluated the relationships between topographic indices, LiDAR derived estimates of basal area and seasonal patterns of the Landsat derived Enhanced Vegetation Index. Preliminary results indicate strong relationships between the rates of annual basal growth and the topographic wetness index (TWI), with differing slopes dependent on tree species (P. menziesii R2 = 0.66-0.71, P. ponderosa R2 = 0.87, L. occidentalis R2 = 0.71) and elevation. Generally, trees located in wetter landscape positions (higher TWI) exhibited greater annual growth per unit of precipitation relative to trees located in drier landscape positions (lower TWI). Similarly, watershed scale analysis of LiDAR derived biomass and seasonal greenness indicates differential growth response due to local convergence and divergence across elevation and insolation gradients. These observations suggest that topographically driven water redistribution patterns may modulate the effects of large scale gradients in precipitation and temperature, thereby creating hotspots for conifer productivity in semiarid watersheds.

Constellation Probabilistic Risk Assessment (PRA): Design Consideration for the Crew Exploration Vehicle

NASA Technical Reports Server (NTRS)

Prassinos, Peter G.; Stamatelatos, Michael G.; Young, Jonathan; Smith, Curtis

2010-01-01

Managed by NASA's Office of Safety and Mission Assurance, a pilot probabilistic risk analysis (PRA) of the NASA Crew Exploration Vehicle (CEV) was performed in early 2006. The PRA methods used follow the general guidance provided in the NASA PRA Procedures Guide for NASA Managers and Practitioners'. Phased-mission based event trees and fault trees are used to model a lunar sortie mission of the CEV - involving the following phases: launch of a cargo vessel and a crew vessel; rendezvous of these two vessels in low Earth orbit; transit to th$: moon; lunar surface activities; ascension &om the lunar surface; and return to Earth. The analysis is based upon assumptions, preliminary system diagrams, and failure data that may involve large uncertainties or may lack formal validation. Furthermore, some of the data used were based upon expert judgment or extrapolated from similar componentssystemsT. his paper includes a discussion of the system-level models and provides an overview of the analysis results used to identify insights into CEV risk drivers, and trade and sensitivity studies. Lastly, the PRA model was used to determine changes in risk as the system configurations or key parameters are modified.

Dendroclimatological spring rainfall reconstruction for an inner Alpine dry valley

NASA Astrophysics Data System (ADS)

Oberhuber, W.; Kofler, W.

Estimates of spring precipitation for the inner Alpine dry valley of the upper Inn (Tyrol, Austria) are made back to A.D. 1724 using a ring width chronology of Scots pine (Pinus sylvestris L.) as predictor. A highly significant agreement in year-to-year ring width changes exists between several chronologies along the dry valley. The dendroclimatic model used for climate reconstruction is a simple linear transfer function that estimates April-June precipitation from current tree-ring width. All verification statistics commonly used in dendroclimatological research are significant ( p<0.01) and indicate that the reconstructed time series provides valuable information on past spring precipitation variability. Reconstructed spring rainfall deficiencies and surpluses >=20% compared to the long-term mean in 1819, 1832, 1834, 1865, 1885, and in 1780, 1782, 1821, 1853, 1910, respectively, are also documented by local historical records. Furthermore, a comparison is made with an independent climate reconstruction based on historical weather indices valid for the northern side of the Swiss Alps. A fairly good agreement is found between both spring rainfall reconstructions at low frequency intervals during 1755-1862 and 1919-1981. This preliminary study shows that tree-rings can be used to reconstruct spring rainfall variability for inner Alpine dry valleys.

Could machine learning improve the prediction of pelvic nodal status of prostate cancer patients? Preliminary results of a pilot study.

PubMed

De Bari, B; Vallati, M; Gatta, R; Simeone, C; Girelli, G; Ricardi, U; Meattini, I; Gabriele, P; Bellavita, R; Krengli, M; Cafaro, I; Cagna, E; Bunkheila, F; Borghesi, S; Signor, M; Di Marco, A; Bertoni, F; Stefanacci, M; Pasinetti, N; Buglione, M; Magrini, S M

2015-07-01

We tested and compared performances of Roach formula, Partin tables and of three Machine Learning (ML) based algorithms based on decision trees in identifying N+ prostate cancer (PC). 1,555 cN0 and 50 cN+ PC were analyzed. Results were also verified on an independent population of 204 operated cN0 patients, with a known pN status (187 pN0, 17 pN1 patients). ML performed better, also when tested on the surgical population, with accuracy, specificity, and sensitivity ranging between 48-86%, 35-91%, and 17-79%, respectively. ML potentially allows better prediction of the nodal status of PC, potentially allowing a better tailoring of pelvic irradiation.

ACTS mobile propagation campaign

NASA Technical Reports Server (NTRS)

Goldhirsh, Julius; Vogel, Wolfhard J.; Torrence, Geoffrey W.

1994-01-01

Preliminary results are presented for three propagation measurement campaigns involving a mobile receiving laboratory and 20 GHz transmissions from the Advanced Communications Technology Satellite (ACTS). Four 1994 campaigns were executed during weekly periods in and around Austin, Texas in February and May, in Central Maryland during March, and in Fairbanks, Alaska and environs in June. Measurements tested the following effects at 20 GHz: (1) attenuation due to roadside trees with and without foliage, (2) multipath effects for scenarios in which line-of-sight paths were unshadowed, (3) fades due to terrain and roadside obstacles, (4) fades due to structures in urban environs, (5) single tree attenuation, and (6) effects of fading at low elevation angles (8 deg in Fairbanks, Alaska) and high elevation angles (55 deg in Austin, Texas). Results presented here cover sampled measurements in Austin, Texas for foliage and non-foliage cases and in Central Maryland for non-foliage runs.

Data fusion with artificial neural networks (ANN) for classification of earth surface from microwave satellite measurements

NASA Technical Reports Server (NTRS)

Lure, Y. M. Fleming; Grody, Norman C.; Chiou, Y. S. Peter; Yeh, H. Y. Michael

1993-01-01

A data fusion system with artificial neural networks (ANN) is used for fast and accurate classification of five earth surface conditions and surface changes, based on seven SSMI multichannel microwave satellite measurements. The measurements include brightness temperatures at 19, 22, 37, and 85 GHz at both H and V polarizations (only V at 22 GHz). The seven channel measurements are processed through a convolution computation such that all measurements are located at same grid. Five surface classes including non-scattering surface, precipitation over land, over ocean, snow, and desert are identified from ground-truth observations. The system processes sensory data in three consecutive phases: (1) pre-processing to extract feature vectors and enhance separability among detected classes; (2) preliminary classification of Earth surface patterns using two separate and parallely acting classifiers: back-propagation neural network and binary decision tree classifiers; and (3) data fusion of results from preliminary classifiers to obtain the optimal performance in overall classification. Both the binary decision tree classifier and the fusion processing centers are implemented by neural network architectures. The fusion system configuration is a hierarchical neural network architecture, in which each functional neural net will handle different processing phases in a pipelined fashion. There is a total of around 13,500 samples for this analysis, of which 4 percent are used as the training set and 96 percent as the testing set. After training, this classification system is able to bring up the detection accuracy to 94 percent compared with 88 percent for back-propagation artificial neural networks and 80 percent for binary decision tree classifiers. The neural network data fusion classification is currently under progress to be integrated in an image processing system at NOAA and to be implemented in a prototype of a massively parallel and dynamically reconfigurable Modular Neural Ring (MNR).

A conceptual approach to approximate tree root architecture in infinite slope models

NASA Astrophysics Data System (ADS)

Schmaltz, Elmar; Glade, Thomas

2016-04-01

Vegetation-related properties - particularly tree root distribution and coherent hydrologic and mechanical effects on the underlying soil mantle - are commonly not considered in infinite slope models. Indeed, from a geotechnical point of view, these effects appear to be difficult to be reproduced reliably in a physically-based modelling approach. The growth of a tree and the expansion of its root architecture are directly connected with both intrinsic properties such as species and age, and extrinsic factors like topography, availability of nutrients, climate and soil type. These parameters control four main issues of the tree root architecture: 1) Type of rooting; 2) maximum growing distance to the tree stem (radius r); 3) maximum growing depth (height h); and 4) potential deformation of the root system. Geometric solids are able to approximate the distribution of a tree root system. The objective of this paper is to investigate whether it is possible to implement root systems and the connected hydrological and mechanical attributes sufficiently in a 3-dimensional slope stability model. Hereby, a spatio-dynamic vegetation module should cope with the demands of performance, computation time and significance. However, in this presentation, we focus only on the distribution of roots. The assumption is that the horizontal root distribution around a tree stem on a 2-dimensional plane can be described by a circle with the stem located at the centroid and a distinct radius r that is dependent on age and species. We classified three main types of tree root systems and reproduced the species-age-related root distribution with three respective mathematical solids in a synthetic 3-dimensional hillslope ambience. Thus, two solids in an Euclidian space were distinguished to represent the three root systems: i) cylinders with radius r and height h, whilst the dimension of latter defines the shape of a taproot-system or a shallow-root-system respectively; ii) elliptic paraboloids represent a cordate-root-system with radius r, height h and a constant, species-independent curvature. This procedure simplifies the classification of tree species into the three defined geometric solids. In this study we introduce a conceptual approach to estimate the 2- and 3-dimensional distribution of different tree root systems, and to implement it in a raster environment, as it is used in infinite slope models. Hereto we used the PCRaster extension in a python framework. The results show that root distribution and root growth are spatially reproducible in a simple raster framework. The outputs exhibit significant effects for a synthetically generated slope on local scale for equal time-steps. The preliminary results depict an initial step to develop a vegetation module that can be coupled with hydro-mechanical slope stability models. This approach is expected to yield a valuable contribution to the implementation of vegetation-related properties, in particular effects of root-reinforcement, into physically-based approaches using infinite slope models.

Nervous systems and scenarios for the invertebrate-to-vertebrate transition

PubMed Central

Holland, Nicholas D.

2016-01-01

Older evolutionary scenarios for the origin of vertebrates often gave nervous systems top billing in accordance with the notion that a big-brained Homo sapiens crowned a tree of life shaped mainly by progressive evolution. Now, however, tree thinking positions all extant organisms equidistant from the tree's root, and molecular phylogenies indicate that regressive evolution is more common than previously suspected. Even so, contemporary theories of vertebrate origin still focus on the nervous system because of its functional importance, its richness in characters for comparative biology, and its central position in the two currently prominent scenarios for the invertebrate-to-vertebrate transition, which grew out of the markedly neurocentric annelid and enteropneust theories of the nineteenth century. Both these scenarios compare phyla with diverse overall body plans. This diversity, exacerbated by the scarcity of relevant fossil data, makes it challenging to establish plausible homologies between component parts (e.g. nervous system regions). In addition, our current understanding of the relation between genotype and phenotype is too preliminary to permit us to convert gene network data into structural features in any simple way. These issues are discussed here with special reference to the evolution of nervous systems during proposed transitions from invertebrates to vertebrates. PMID:26598728

La Serra d'Almos (Tarragona): an example of phenological data rescue and preservation in Catalonia

NASA Astrophysics Data System (ADS)

Busto, Montserrat; Cunillera, Jordi; de Yzaguirre, Xavi; Borrell, Josep

2016-04-01

The interruption of important phenological series and the progressive disappearance of phenological observations in Catalonia led the Meteorological Service of Catalonia (SMC) to design and impulse a new phenological network promoted by the Climate Change Unit of this Met Service. The "Fenocat" network was born in March 2013, and currently has around fifty observers distributed throughout Catalonia that observe plants, birds and butterflies. We are providing data from different plant phenophases to PEP725 database. Besides this new phenological network (Fenocat), one of the aims of SMC is to rescue and preserve historical data from different observation points in Catalonia. We show in this poster the example of rescue and preservation of phenological data from la Serra d'Almos (in Tivissa, near Tarragona, Catalonia, NE Iberian Peninsula), an observation series that began in 1973. After digitalization process and quality control tasks, we show preliminary results of this phenological series, and we compare them with those of similar European series. We show the evolution trends for different observed species, such as almond tree (Prunus dulcis), hazel (Corylus avellana), plum (Prunus domestica), olive tree (Olea europea), apple tree (Malus domestica) or vineyard (Vitis vinifera).

Compositional Variation and Bioactivity of the Leaf Essential Oil of Montanoa guatemalensis from Monteverde, Costa Rica: A Preliminary Investigation

PubMed Central

Flatt, Victoria D.; Campos, Carlos R.; Kraemer, Maria P.; Bailey, Brittany A.; Satyal, Prabodh; Setzer, William N.

2015-01-01

Background: Montanoa guatemalensis is a small to medium-sized tree in the Asteraceae that grows in Central America from Mexico south through Costa Rica. There have been no previous investigations on the essential oil of this tree. Methods: The leaf essential oils of M. guatemalensis were obtained from different individual trees growing in Monteverde, Costa Rica, in two different years, and were analyzed by gas chromatography—mass spectrometry. Results: The leaf oils from 2008 were rich in sesquiterpenoids, dominated by α-selinene, β-selinene, and cyclocolorenone, with lesser amounts of the monoterpenes α-pinene and limonene. In contrast, the samples from 2009 showed no α- or β-selinene, but large concentrations of trans-muurola-4(14),5-diene, β-cadinene, and cyclocolorenone, along with greater concentrations of α-pinene and limonene. The leaf oils were screened for cytotoxic and antimicrobial activities and did show selective cytotoxic activity on MDA-MB-231 breast tumor cells. Conclusion: M. guatemalensis leaf oil, rich in cyclocolorenone, α-selinene, and β-selinene, showed selective in vitro cytotoxic activity to MDA-MB-231 cells. The plant may be a good source of cyclocolorenone. PMID:28930215

Effects of harvesting cypress swamps on water quality and quantity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ewel, K.C.

1985-09-01

The responses of cypress swamps to a spectrum of harvest techniques are being studied in the Withlacoochee State Forest, Hernando County, Florida. Among the 11 swamps in the study area, four contain plots that were harvested experimentally in 1984. Stand improvement cuts were made in plots in two large swamps. Measurements of tree biomass were made in all but two of the large swamps. The swamps were surveyed for cone production in the fall and regeneration in the spring. However, coppice was produced in all the harvested plots. These preliminary results suggest that coppice production may be a dependable regenerationmore » method, although it may not be desirable for stand improvement cuts and thinning. Evapotranspiration from three cypress swamps averaged 79 cm over a 3-year period. The purpose of this project was to determine specific impacts of harvesting on water quality and water loss rates in the study areas.« less

Integrated optical maze

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roos, E.V.; Hendrix, J.L.

1994-06-01

Improvements to Nuclear Weapons Surety through the development of new detonation control techniques incorporating electro-optic technology are reviewed and proposed in this report. The results of the Kansas City Division`s (KCD`s) literature and vendor search, potential system architecture synthesis, and device test results are the basis of this report. This study has revealed several potential reconfigureable optical interconnect architectures that meet Los Alamos National Laboratory`s preliminary performance specifications. Several planer and global architectures have the potential for meeting the Department of Energy`s applications. Preliminary conclusions on the proposed architectures are discussed. The planer approach of monolithic GaAs amplifier switch arraysmore » is the leading candidate because it meets most of the specifications now. LiNbO{sub 3} and LiTaO{sub 3} planer tree switch arrays are the second choice because they meet all the specifications except for laser power transmission. Although not atop choice, acousto-optical free space switch arrays have been considered and meet most of the specifications. Symmetric-Self Electro-Optic Effect Devices (S-SEED) free space switch arrays are being considered and have excellent potential for smart reconfigureable optical interconnects in the future.« less

The effect of wood ash fertilization on soil respiration and tree stand growth in boreal peatland forests

NASA Astrophysics Data System (ADS)

Liimatainen, Maarit; Maljanen, Marja; Hytönen, Jyrki

2017-04-01

Out of Finland's original 10 million hectares of peatlands over half has been drained for forestry. Natural peatlands act as a sink for carbon but when peatland is drained, increased oxygen concentration in the peat accelerates the aerobic decomposition of the old organic matter of the peat leading to carbon dioxide (CO2) emissions to atmosphere. Increasing use of bioenergy increases also the amount of ash produced as a byproduct in power plants. Wood ash contains all essential nutrients for trees to grow except nitrogen. Therefore, wood ash is ideal fertilizer for nitrogen rich peatland forests where lack of phosphorus or potassium may restrict tree growth. At the moment, wood ash is the only available PK-fertilizer for peatland forests in Finland and areas of peatland forests fertilized with ash are increasing annually. The effects of wood ash on vegetation, soil properties and tree growth are rather well known although most of the studies have been made using fine ash whereas nowadays mostly stabilized ash (e.g. granulated) is used. Transporting and spreading of stabilized ash is easier than that of dusty fine ash. Also, slower leaching rate of nutrients is environmentally beneficial and prolongs the fertilizer effect. The knowledge on the impact of granulated wood ash on greenhouse gas emissions is still very limited. The aim of this study was to examine the effects of granulated wood ash on CO2 emissions from peat and tree stand growth. Field measurements were done in two boreal peatland forests in 2011 and 2012. One of the sites is more nutrient rich with soil carbon to nitrogen ratio (C/N) of 18 whereas the other site is nutrient poor with C/N ratio of 82. Both sites were fertilized with granulated wood ash in 2003 (5000 kg ha-1). The effect of fertilization was followed with tree stand measurements conducted 0, 5 and 10 years after the fertilization. The CO2 emissions of the decomposing peat (heterotrophic respiration) were measured from study plots where vegetation and litter were removed to eliminate respiration by vegetation (autotrophic respiration). Roots were cut by installing aluminum tubes into the depth of 30 cm. Emissions were measured with chamber method using portable CO2 analyzer. Soil temperature was measured simultaneously with gas measurements manually from the depth of 5 cm as well as continuously with data loggers embedded into the peat. Annual soil respiration was modelled assuming that emissions change as a function of temperature. According to preliminary results, fertilization with granulated wood ash increased CO2 emissions of the peat significantly, especially in nutrient poor site. Ash fertilization increased also strongly the accumulation of carbon into the trees. Nonetheless, in both sites CO2emissions from decomposing peat where higher than carbon that was stored in biomass. This was the case especially in the nutrient poor site where trees are growing poorly and due to low peat nitrogen content the area is not considered suitable for ash fertilization. However, at the more fertile site both stand C sequestration and soil C efflux increased similarly.

Process-based modeling of species' responses to climate change - a proof of concept using western North American trees

NASA Astrophysics Data System (ADS)

Evans, M. E.; Merow, C.; Record, S.; Menlove, J.; Gray, A.; Cundiff, J.; McMahon, S.; Enquist, B. J.

2013-12-01

Current attempts to forecast how species' distributions will change in response to climate change suffer under a fundamental trade-off: between modeling many species superficially vs. few species in detail (between correlative vs. mechanistic models). The goals of this talk are two-fold: first, we present a Bayesian multilevel modeling framework, dynamic range modeling (DRM), for building process-based forecasts of many species' distributions at a time, designed to address the trade-off between detail and number of distribution forecasts. In contrast to 'species distribution modeling' or 'niche modeling', which uses only species' occurrence data and environmental data, DRMs draw upon demographic data, abundance data, trait data, occurrence data, and GIS layers of climate in a single framework to account for two processes known to influence range dynamics - demography and dispersal. The vision is to use extensive databases on plant demography, distributions, and traits - in the Botanical Information and Ecology Network, the Forest Inventory and Analysis database (FIA), and the International Tree Ring Data Bank - to develop DRMs for North American trees. Second, we present preliminary results from building the core submodel of a DRM - an integral projection model (IPM) - for a sample of dominant tree species in western North America. IPMs are used to infer demographic niches - i.e., the set of environmental conditions under which population growth rate is positive - and project population dynamics through time. Based on >550,000 data points derived from FIA for nine tree species in western North America, we show IPM-based models of their current and future distributions, and discuss how IPMs can be used to forecast future forest productivity, mortality patterns, and inform efforts at assisted migration.

Testing the Climate Sensitivity of Mountain Hemlock (Tsuga mertensiana (Bong.) Carr.) Near the Southern Limit of Its Range

NASA Astrophysics Data System (ADS)

Appleton, S.; St George, S.

2014-12-01

This study investigates the climate sensitivity of mountain hemlock (Tsuga mertensiana (Bong.) Carr.) near the southern limit of its range, tests the stability of its climate-tree relations over the last few decades, and explores its potential as a hydroclimatic proxy for Crater Lake National Park. We collected tree cores at seven locations around the caldera rim, focusing on hemlock growing at higher elevations (2000-2400 masl). The median length of all ring-width series is 283 years, and the oldest hemlock sample extends back to C.E. 1450. Several types of anatomical anomalies, including frost rings, traumatic resin ducts, false rings, and light late-wood bands were observed within the specimens, the most common feature being a false ring in C.E. 1810. Each set of standardized ring-width measurements has a strong common signal, with between-tree correlations (r-bar) ranging from 0.31 to 0.49. Preliminary analysis suggests hemlock growth across the park is strongly and inversely related to total cool-season precipitation, and is also influenced positively (albeit more weakly) by mean summer temperature. Most sites are significantly and negatively correlated with total December-to-February precipitation (r = -0.41) and total precipitation from December to August (r = -0.48). Compared to other ring-width records exhibiting similar negative responses to winter precipitation, these hemlocks appear to track that specific signal quite clearly and, as a result, these data may be suitable to reconstruct past changes in cool-season moisture in Crater Lake National Park and across the broader southern Cascades.

Ratite oils promote keratinocyte cell growth and inhibit leukocyte activation

PubMed Central

Bennett, Darin C.; Leung, Gigi; Wang, Eddy; Ma, Sam; Lo, Blanche K. K.; McElwee, Kevin J.; Cheng, Kimberly M.

2015-01-01

Traditionally, native Australian aborigines have used emu oil for the treatment of inflammation and to accelerate wound healing. Studies on mice suggest that topically applied emu oil may have anti-inflammatory properties and may promote wound healing. We investigated the effects of ratite oils (6 emu, 3 ostrich, 1 rhea) on immortalized human keratinocytes (HaCaT cells) in vitro by culturing the cells in media with oil concentrations of 0%, 0.5%, and 1.0%. Peking duck, tea tree, and olive oils were used as comparative controls. The same oils at 0.5% concentration were evaluated for their influence on peripheral blood mononuclear cell (PBMC) survival over 48 hr and their ability to inhibit IFNγ production in PBMCs activated by phytohemagglutinin (PHA) in ELISpot assays. Compared to no oil control, significantly shorter population doubling time durations were observed for HaCaT cells cultured in emu oil (1.51 × faster), ostrich oil (1.46 × faster), and rhea oil (1.64 × faster). Tea tree oil demonstrated significant antiproliferative activity and olive oil significantly prolonged (1.35 × slower) cell population doubling time. In contrast, almost all oils, particularly tea tree oil, significantly reduced PBMC viability. Different oils had different levels of inhibitory effect on IFNγ production with individual emu, ostrich, rhea, and duck oil samples conferring full inhibition. This preliminary investigation suggests that emu oil might promote wound healing by accelerating the growth rate of keratinocytes. Combined with anti-inflammatory properties, ratite oil may serve as a useful component in bandages and ointments for the treatment of wounds and inflammatory skin conditions. PMID:26217022

Canada Warbler use of harvested stands following timber management in the southern portion of their range

USGS Publications Warehouse

Becker, Douglas A.; Wood, Petra B.; Keyser, Patrick D.

2012-01-01

We evaluated Canada Warbler (Cardellina canadensis) responses to changes in habitat characteristics (landscape metrics, landcover, and microhabitat features) at multiple spatial scales resulting from timber harvests (clear-cut, heavy partial, and light partial) between 1996 and 2009. Relative abundance of Canada Warblers decreased over time on our West Virginia study area (Wildlife and Ecosystem Research Forest) and within the Appalachian Bird Conservation Region. Initially, relative abundance was greater closer to roads, but as timber harvests became more common, relative abundance became positively associated with amount of light partial harvests at the local scale. Nest survival was 45.6 ± 18.3% during 1996–1998 and 24.9 ± 14.6% during 2007–2009, but did not differ (P = 0.38) between these periods. Areas around nests in 2007–2009 (n = 17) had less intermediate canopy cover and fewer residual trees but more green cover, woody debris, and pole trees than areas around nests in 1996–1998 (n = 10). Successful nests had more low cover, less vertical diversity, more woody debris, more saplings, and greater edge density than failed nests. We found a positive association between relative abundance and all three types of timber harvests and an improvement in habitat through understory development and retention of residual trees. Our research finds preliminary support for use of timber harvests, particularly light partial harvests, as a management tool for Canada Warblers in the southern portion of their range with the need for extended research using treatments and controls to confirm successful management.

Machine learning to predict the occurrence of bisphosphonate-related osteonecrosis of the jaw associated with dental extraction: A preliminary report.

PubMed

Kim, Dong Wook; Kim, Hwiyoung; Nam, Woong; Kim, Hyung Jun; Cha, In-Ho

2018-04-23

The aim of this study was to build and validate five types of machine learning models that can predict the occurrence of BRONJ associated with dental extraction in patients taking bisphosphonates for the management of osteoporosis. A retrospective review of the medical records was conducted to obtain cases and controls for the study. Total 125 patients consisting of 41 cases and 84 controls were selected for the study. Five machine learning prediction algorithms including multivariable logistic regression model, decision tree, support vector machine, artificial neural network, and random forest were implemented. The outputs of these models were compared with each other and also with conventional methods, such as serum CTX level. Area under the receiver operating characteristic (ROC) curve (AUC) was used to compare the results. The performance of machine learning models was significantly superior to conventional statistical methods and single predictors. The random forest model yielded the best performance (AUC = 0.973), followed by artificial neural network (AUC = 0.915), support vector machine (AUC = 0.882), logistic regression (AUC = 0.844), decision tree (AUC = 0.821), drug holiday alone (AUC = 0.810), and CTX level alone (AUC = 0.630). Machine learning methods showed superior performance in predicting BRONJ associated with dental extraction compared to conventional statistical methods using drug holiday and serum CTX level. Machine learning can thus be applied in a wide range of clinical studies. Copyright © 2017. Published by Elsevier Inc.

Preliminary assessment of airborne imaging spectrometer and airborne thematic mapper data acquired for forest decline areas in the Federal Republic of Germany

NASA Technical Reports Server (NTRS)

Herrmann, Karin; Ammer, Ulrich; Rock, Barrett; Paley, Helen N.

1988-01-01

This study evaluated the utility of data collected by the high-spectral resolution airborne imaging spectrometer (AIS-2, tree mode, spectral range 0.8-2.2 microns) and the broad-band Daedalus airborne thematic mapper (ATM, spectral range 0.42-13.0 micron) in assessing forest decline damage at a predominantly Scotch pine forest in the FRG. Analysis of spectral radiance values from the ATM and raw digital number values from AIS-2 showed that higher reflectance in the near infrared was characteristic of high damage (heavy chlorosis, limited needle loss) in Scotch pine canopies. A classification image of a portion of the AIS-2 flight line agreed very well with a damage assessment map produced by standard aerial photointerpretation techniques.

Minimum Irrigation Requirements for Cottonwood (Populus fremontii and P. deltoides) and Willow (Salix gooddingii) Grown in a Desert Environment

NASA Astrophysics Data System (ADS)

Glenn, E. P.; Hartwell, S.; Morino, K.; Nagler, P. L.

2009-12-01

Native tree plots have been established in riverine irrigation districts in the western U.S. to provide habitat for threatened and endangered birds. Information is needed on the minimum effective irrigation requirements of the target species. We summarize preliminary (or unpublished) findings of a study or cottonwood (Populus spp.) and willow (Salix gooddingii) trees that were grown for seven years in an outdoor plot in a desert environment in Tucson, Arizona to determine plant water use. Plants were allowed to achieve a nearly complete canopy cover over the first four years, then were subjected to three summer irrigation schedules: 6.2 mm d-1; 8.26 mm d-1 and 15.7 mm d-1. The lowest irrigation rate was sufficient to maintain growth and high leaf area index for cottonwoods over three years, but willows suffered partial die-back on this rate, and required 8.26 mm d-1 to maintain growth. These irrigation rates were required April 15 - September 15, but only 0.88 mm d-1 was required during the dormant periods of the year. Expressed as a fraction of reference crop evapotranspiration (ET/ETo), annual water requirements were 0.83 ETo for cottonwood and 1.01 ETo for willow, which includes irrigation plus precipitation. Current practices tend to over-irrigate restoration plots, and this study can provide guidelines for more efficient water use.

Ghost forest creation and the conversion of uplands to wetlands

NASA Astrophysics Data System (ADS)

Kirwan, M. L.; Schieder, N. W.; Reay, W.

2017-12-01

Global sea level rise rates began accelerating sharply in the late 19th century, with an approximate tripling in sea level rise rates in many regions of the world. Some portions of the coastal landscape, such as marshes and barrier islands, survive relative sea level rise by natural eco-geomorphic processes that allow them to build elevation vertically and migrate landward. In contrast, adjacent uplands typically occupied by forests and agricultural fields have limited ability to resist the impacts of sea level rise. This portion of the coastal landscape consists of mostly salt intolerant plants, receives little mineral sediment deposition, and rarely builds elevation through the accumulation of soil organic matter. Thus, ghost forests- dead trees surrounded by marshland- are a prominent feature of many low-relief coastal landscapes, and represent a striking visual indicator of upland to wetland conversion. Here, we report preliminary results of several efforts designed to quantify rates and drivers of upland to wetland conversion in the mid-Atlantic region of the United States. Drone based canopy monitoring and ground-based seedling experiments suggest that ghost forests are created by episodic, storm-driven adult tree mortality paired with continuous seedling mortality. Preliminary comparisons between sediment cores and historical photographs from 5 sites in Maryland, Virginia, and North Carolina suggest that modern coastal forest retreat is 2-10 times faster than late-Holocene retreat rates, and that rates have accelerated in most decades since the 1930's. Finally, historical T-Sheet maps suggest that approximately 100,000 acres (400 km2) of uplands have converted to wetlands in the Chesapeake region, and that about 1/3 of all present-day marsh was created by upland drowning since the late 19th Century. Together, these observations indicate rapid coastal transgression, where low-relief, terrestrial portions of the coastal landscape are perhaps more sensitive to sea level rise than better studied, more seaward portions.

Distinct effects of water use efficiency increase on growth in Scots pine and sessile oak in the Mediterranean Basin

NASA Astrophysics Data System (ADS)

Martínez-Sancho, Elisabet; Dorado-Liñán, Isabel; Gutiérrez-Merino, Emilia; Matiu, Michael; Heinrich, Ingo; Helle, Gerhard; Menzel, Annette

2017-04-01

Drought is one of the main drivers of species distribution in the Mediterranean Basin, which will be exacerbated by climate change. The increase of atmospheric CO2 concentrations (Ca) has been related to enhanced tree growth and intrinsic water use efficiency (iWUE). However, in the Mediterranean Basin this 'fertilizing' effect should compensate the potential drought-induced growth reduction to maintain forest productivity at a comparable level. This is particularly relevant for temperate species reaching their southern distribution limits and/or the limits of their climatic niche in this region. We investigated tree growth and physiological responses of Scots pine (Pinus sylvestris L.) and sessile oak (Quercus petraea (Matt.) Liebl.) stands located at their southern distribution limits using annually resolved tree-ring width and δ13C chronologies for the period 1960-2012. The selected stands were sampled in Spain, France, Italy, Slovenia, Bulgaria, and Romania. Wood cores were extracted at each site and tree-ring width and δ13C were measured. Basal area increment (BAI) was calculated as a surrogate of secondary growth and 13C discrimination (Δ), leaf intercellular CO2 concentration (Ci) and iWUE were estimated from δ13C values. The temporal trends of BAI, Δ, Ci and iWUE, as well as in climatic variables (i.e. temperature, precipitation and potential evapotranspiration derived from CRU TS3.23 dataset) were calculated per site for the study period. Our specific objectives were (i) to test if rising atmospheric CO2 concentrations and changes in climate may have induced shifts in tree growth and ecophysiological proxies; (ii) to determine whether and how changes in iWUE are related to radial growth rates; and (iii) to assess site-specific physiological adjustments to increased atmospheric CO2 concentrations over the studied period. Preliminary results showed a generalized increase in Ci, and consequently in iWUE, at all study sites. Scots pine stands displayed a significant decreased in BAI likely induced by summer droughts, leading to a negative relationship between iWUE and BAI. In addition, most of the pine stands kept a constant Ci/Ca over the study period. Sessile oak stands displayed positive growth trends over the study period and correlations of BAI with summer drought were lower and scarcer. Oak stands located in the eastern part of the Mediterranean Basin displayed a positive relationship between iWUE and BAI whereas this relationship was negative for the western stands. The Ci from most of the oak sites followed the Ca trends over time. However, oak sites with higher water availability displayed positive trends in the Ci/Ca ratio indicating a weak stomatal response.

Spatial effects of aboveground biomass on soil ecological parameters and trace gas fluxes in a savannah ecosystem of Mount Kilimanjaro

NASA Astrophysics Data System (ADS)

Becker, Joscha; Gütlein, Adrian; Sierra Cornejo, Natalia; Kiese, Ralf; Hertel, Dietrich; Kuzyakov, Yakov

2015-04-01

The savannah biome is a hotspot for biodiversity and wildlife conservation in Africa and recently got in the focus of research on carbon sequestration. Savannah ecosystems are under strong pressure from climate and land-use change, especially around populous areas like the Mt. Kilimanjaro region. Savannah vegetation in this area consists of grassland with isolated trees and is therefore characterized by high spatial variation of canopy cover, aboveground biomass and root structure. Canopy structure is known to affect microclimate, throughfall and evapotranspiration and thereby controls soil moisture conditions. Consequently, the canopy structure is a major regulator for soil ecological parameters and soil-atmospheric trace gas exchange (CO2, N2O, CH4) in water limited environments. The spatial distribution of these parameters and the connection between above and belowground processes are important to understand and predict ecosystem changes and estimate its vulnerability. Our objective was to determine trends and changes of soil parameters and relate their spatial variability to the vegetation structure. We chose three trees from each of the two most dominant species (Acacia nilotica and Balanites aegyptiaca) in our research area. For each tree, we selected transects with nine sampling points of the same relative distances to the stem. Distances were calculated in relation to the crown radius. At these each sampling point a soil core was taken and separated in 0-10 cm and 10-30 cm depth. We measured soil carbon (C) and nitrogen (N) storage, microbial biomass carbon C and N, soil respiration as well as root biomass and -density, soil temperature and soil water content. Each tree was characterized by crown spread, leaf area index and basal area. Preliminary results show that C and N stocks decreased about 50% with depth independently of distance to the tree. Soil water content under the tree crown increased with depth while it decreased under grass cover. Microbial Biomass C and N in the upper 10 cm decreased with distance (C: r²=0.22, p<0.001; N: r²=0.3, p<0.001) as well as total soil respiration. This decrease was affected by tree size but independent from tree species. We conclude that savannah ecosystems exhibit a large spatial variability of soil parameters within the upper horizons which is strongly depend on the structure of aboveground biomass.

Tree rings and rainfall in the equatorial Amazon

NASA Astrophysics Data System (ADS)

Granato-Souza, Daniela; Stahle, David W.; Barbosa, Ana Carolina; Feng, Song; Torbenson, Max C. A.; de Assis Pereira, Gabriel; Schöngart, Jochen; Barbosa, Joao Paulo; Griffin, Daniel

2018-05-01

The Amazon basin is a global center of hydroclimatic variability and biodiversity, but there are only eight instrumental rainfall stations with continuous records longer than 80 years in the entire basin, an area nearly the size of the coterminous US. The first long moisture-sensitive tree-ring chronology has been developed in the eastern equatorial Amazon of Brazil based on dendrochronological analysis of Cedrela cross sections cut during sustainable logging operations near the Rio Paru. The Rio Paru chronology dates from 1786 to 2016 and is significantly correlated with instrumental precipitation observations from 1939 to 2016. The strength and spatial scale of the precipitation signal vary during the instrumental period, but the Rio Paru chronology has been used to develop a preliminary reconstruction of February to November rainfall totals from 1786 to 2016. The reconstruction is related to SSTs in the Atlantic and especially the tropical Pacific, similar to the stronger pattern of association computed for the instrumental rainfall data from the eastern Amazon. The tree-ring data estimate extended drought and wet episodes in the mid- to late-nineteenth century, providing a valuable, long-term perspective on the moisture changes expected to emerge over the Amazon in the coming century due to deforestation and anthropogenic climate change.

Nervous systems and scenarios for the invertebrate-to-vertebrate transition.

PubMed

Holland, Nicholas D

2016-01-05

Older evolutionary scenarios for the origin of vertebrates often gave nervous systems top billing in accordance with the notion that a big-brained Homo sapiens crowned a tree of life shaped mainly by progressive evolution. Now, however, tree thinking positions all extant organisms equidistant from the tree's root, and molecular phylogenies indicate that regressive evolution is more common than previously suspected. Even so, contemporary theories of vertebrate origin still focus on the nervous system because of its functional importance, its richness in characters for comparative biology, and its central position in the two currently prominent scenarios for the invertebrate-to-vertebrate transition, which grew out of the markedly neurocentric annelid and enteropneust theories of the nineteenth century. Both these scenarios compare phyla with diverse overall body plans. This diversity, exacerbated by the scarcity of relevant fossil data, makes it challenging to establish plausible homologies between component parts (e.g. nervous system regions). In addition, our current understanding of the relation between genotype and phenotype is too preliminary to permit us to convert gene network data into structural features in any simple way. These issues are discussed here with special reference to the evolution of nervous systems during proposed transitions from invertebrates to vertebrates. © 2015 The Author(s).

Aspects of masticatory form and function in common tree shrews, Tupaia glis.

PubMed

Fish, D R

1983-04-01

Tree shrews have relatively primitive tribosphenic molars that are apparently similar to those of basal eutherians; thus, these animals have been used as a model to describe mastication in early mammals. In this study the gross morphology of the bony skull, joints, dentition, and muscles of mastication are related to potential jaw movements and cuspal relationships. Potential for complex mandibular movements is indicated by a mobile mandibular symphysis, shallow mandibular fossa that is large compared to its resident condyle, and relatively loose temporomandibular joint ligaments. Abrasive tooth wear is noticeable, and is most marked at the first molars and buccal aspects of the upper cheek teeth distal to P2. Muscle morphology is basically similar to that previously described for Tupaia minor and Ptilocercus lowii. However, in T. glis, an intraorbital part of deep temporalis has the potential for inducing lingual translation of its dentary, and the large medial pterygoid has extended its origin anteriorly to the floor of the orbit, which would enhance protrusion. The importance of the tongue and hyoid muscles during mastication is suggested by broadly expanded anterior bellies of digastrics, which may assist mylohyoids in tensing the floor of the mouth during forceful tongue actions, and by preliminary electromyography, which suggests that masticatory muscles alone cannot fully account for jaw movements in this species.

Canopy rainfall partitioning across an urbanization gradient in forest structure as characterized by terrestrial LiDAR

NASA Astrophysics Data System (ADS)

Mesta, D. C.; Van Stan, J. T., II; Yankine, S. A.; Cote, J. F.; Jarvis, M. T.; Hildebrandt, A.; Friesen, J.; Maldonado, G.

2017-12-01

As urbanization expands, greater forest area is shifting from natural stand structures to urban stand structures, like forest fragments and landscaped tree rows. Changes in forest canopy structure have been found to drastically alter the amount of rainwater reaching the surface. However, stormwater management models generally treat all forest structures (beyond needle versus broadleaved) similarly. This study examines the rainfall partitioning of Pinus spp. canopies along a natural-to-urban forest gradient and compares these to canopy structural measurements using terrestrial LiDAR. Throughfall and meteorological observations were also used to estimate parameters of the commonly-used Gash interception model. Preliminary findings indicate that as forest structure changed from natural, closed canopy conditions to semi-closed canopy fragments and, ultimately, to exposed urban landscaping tree rows, the interchange between throughfall and rainfall interception also changed. This shift in partitioning between throughfall and rainfall interception may be linked to intuitive parameters, like canopy closure and density, as well as more complex metrics, like the fine-scale patterning of gaps (ie, lacunarity). Thus, results indicate that not all forests of the same species should be treated the same by stormwater models. Rather, their canopy structural characteristics should be used to vary their hydrometeorological interactions.

Infection of non-host model plant species with the narrow-host-range Cacao swollen shoot virus.

PubMed

Friscina, Arianna; Chiappetta, Laura; Jacquemond, Mireille; Tepfer, Mark

2017-02-01

Cacao swollen shoot virus (CSSV) is a major pathogen of cacao (Theobroma cacao) in Africa, and long-standing efforts to limit its spread by the culling of infected trees have had very limited success. CSSV is a particularly difficult virus to study, as it has a very narrow host range, limited to several tropical tree species. Furthermore, the virus is not mechanically transmissible, and its insect vector can only be used with difficulty. Thus, the only efficient means to infect cacao plants that have been experimentally described so far are by particle bombardment or the agroinoculation of cacao plants with an infectious clone. We have genetically transformed three non-host species with an infectious form of the CSSV genome: two experimental hosts widely used in plant virology (Nicotiana tabacum and N. benthamiana) and the model species Arabidopsis thaliana. In transformed plants of all three species, the CSSV genome was able to replicate, and, in tobacco, CSSV particles could be observed by immunosorbent electron microscopy, demonstrating that the complete virus cycle could be completed in a non-host plant. These results will greatly facilitate the preliminary testing of CSSV control strategies using plants that are easy to raise and to transform genetically. © 2016 BSPP AND JOHN WILEY & SONS LTD.

Microwave sensing of tree trunks

NASA Astrophysics Data System (ADS)

Jezova, Jana; Mertens, Laurence; Lambot, Sebastien

2015-04-01

The main subject of this research is the observation of the inner part of living tree trunks using ground-penetrating radar (GPR). Trees are everyday part of human life and therefore it is important to pay attention to the tree conditions. The most obvious consequence of the poor tree condition is dead or injury caused by falling tree. The trunk internal structure is divided into three main parts: heartwood, sapwood and bark, which make this medium highly anisotropic and heterogeneous. Furthermore, the properties of the wood are not only specie-dependent but also depend on genetic and on environmental conditions. In urban areas the main problem for the stability of the trees relies in the apparition of decays provoked by fungi, insect or birds. This results in cavities or decreasing of the support capacity of the tree. GPR has proved itself to be a very powerful electromagnetic tool for non-destructive detection of buried objects. Since the beginning of the 20th century it has been used in several different areas (archaeology, landmine detection, civil engineering, ...). GPR uses the principle of the scattering of the electromagnetic waves that are radiated from a transmitting antenna. Then the waves propagate through the medium and are reflected from the object and then they are received by a receiving antenna. The velocity of the scattered signal is determined primarily by the permittivity of the material. The optimal functionality of the GPR was investigated using the numerical simulation tool gprMax2D. This tool is based on a Finite-Difference Time-Domain (FDTD) numerical model. Subsequently, the GPR functionality was tested using the laboratory model of a decayed tree trunk. Afterwards, the results and lessons learnt in the simplified tests will be used in the processing of the real data and will help to achieve deeper understanding of them. The laboratory model of the tree trunk was made by plastic or carton pipes and filled by sand. Space inside the model was divided into three sections to separate parts with different moisture (heartwood and sapwood) or empty space (decays). For easier manipulation with the antenna we developed a special ruler for measuring the distance along the scans. Instead of the surveying wheel we read the distance with a camera, which was fixed on the antenna and focused on the ruler with a binary pattern. Hence, during whole measurement and the data processing we were able to identify an accurate position on the tree in view of the scan. Some preliminary measurements on the trees were also conducted. They were performed using a GSSI 900 MHz antenna. Several tree species (beech, horse-chestnut, birch, ...) in Louvain-la-Neuve and Brussels, Belgium, have been investigated to see the internal structure of the tree decays. The measurements were carried out mainly by circumferential measurement around the trunk and also by vertical measurement along the trunk for approximate detection of the cavity. The comparison between the numerical simulations, simplified tree trunk model and real data from trees is presented. This research is funded by the Fonds de la Recherche Scientifique (FNRS, Belgium) and benefits from networking activities carried out within the EU COST Action TU1208 "Civil Engineering Applications of Ground Penetrating Radar".

Application of Failure Mode and Effect Analysis (FMEA), cause and effect analysis, and Pareto diagram in conjunction with HACCP to a corn curl manufacturing plant.

PubMed

Varzakas, Theodoros H; Arvanitoyannis, Ioannis S

2007-01-01

The Failure Mode and Effect Analysis (FMEA) model has been applied for the risk assessment of corn curl manufacturing. A tentative approach of FMEA application to the snacks industry was attempted in an effort to exclude the presence of GMOs in the final product. This is of crucial importance both from the ethics and the legislation (Regulations EC 1829/2003; EC 1830/2003; Directive EC 18/2001) point of view. The Preliminary Hazard Analysis and the Fault Tree Analysis were used to analyze and predict the occurring failure modes in a food chain system (corn curls processing plant), based on the functions, characteristics, and/or interactions of the ingredients or the processes, upon which the system depends. Critical Control points have been identified and implemented in the cause and effect diagram (also known as Ishikawa, tree diagram, and the fishbone diagram). Finally, Pareto diagrams were employed towards the optimization of GMOs detection potential of FMEA.

Integrating Decision Tree and Hidden Markov Model (HMM) for Subtype Prediction of Human Influenza A Virus

NASA Astrophysics Data System (ADS)

Attaluri, Pavan K.; Chen, Zhengxin; Weerakoon, Aruna M.; Lu, Guoqing

Multiple criteria decision making (MCDM) has significant impact in bioinformatics. In the research reported here, we explore the integration of decision tree (DT) and Hidden Markov Model (HMM) for subtype prediction of human influenza A virus. Infection with influenza viruses continues to be an important public health problem. Viral strains of subtype H3N2 and H1N1 circulates in humans at least twice annually. The subtype detection depends mainly on the antigenic assay, which is time-consuming and not fully accurate. We have developed a Web system for accurate subtype detection of human influenza virus sequences. The preliminary experiment showed that this system is easy-to-use and powerful in identifying human influenza subtypes. Our next step is to examine the informative positions at the protein level and extend its current functionality to detect more subtypes. The web functions can be accessed at http://glee.ist.unomaha.edu/.

Pharmacognostic evaluation of leaf of Cordia macleodii Hook., An ethnomedicinally important plant.

PubMed

Bhide, Bhargav; Pillai, A P G; Shukla, V J; Acharya, R N

2011-04-01

Plants of ethnomedicinal importance have contributed for the development of many new pharmacologically effective molecules/chemical entities to modern medicine. India, the country having one of the richest biodiversity of its flora in its forest, with numerous tribal inhabitants, is able to contribute a lot from ethnomedicine to the ailing humanity. Cordia macleodii Hook. (Boraginaceae), an ethnomedicinal plant has been highlighted for its wound healing, aphrodisiac and hepatoprotective activities. It is a medium-sized tree, known as Panki/Shikari by the tribals, rarely found in the forests of Orissa, Chhattisgarh and Madhya Pradesh. So far, the plant has been studied neither for its pharmacognostical characters nor for its pharmacological actions except its hepatoprotective activity. Hence, it has been selected for a detailed investigation which includes pharmacognostic study of its leaf to find out the diagnostic characters and preliminary physicochemical analysis. Results of the study will help in identifying the plant pharmacognostically. Presence of alkaloids, glycosides and tannins were found during the study.

Pharmacognostic evaluation of leaf of Cordia macleodii Hook., An ethnomedicinally important plant

PubMed Central

Bhide, Bhargav; Pillai, A. P. G.; Shukla, V. J.; Acharya, R. N.

2011-01-01

Plants of ethnomedicinal importance have contributed for the development of many new pharmacologically effective molecules/chemical entities to modern medicine. India, the country having one of the richest biodiversity of its flora in its forest, with numerous tribal inhabitants, is able to contribute a lot from ethnomedicine to the ailing humanity. Cordia macleodii Hook. (Boraginaceae), an ethnomedicinal plant has been highlighted for its wound healing, aphrodisiac and hepatoprotective activities. It is a medium-sized tree, known as Panki/Shikari by the tribals, rarely found in the forests of Orissa, Chhattisgarh and Madhya Pradesh. So far, the plant has been studied neither for its pharmacognostical characters nor for its pharmacological actions except its hepatoprotective activity. Hence, it has been selected for a detailed investigation which includes pharmacognostic study of its leaf to find out the diagnostic characters and preliminary physicochemical analysis. Results of the study will help in identifying the plant pharmacognostically. Presence of alkaloids, glycosides and tannins were found during the study. PMID:22408312

Identifying type 1 and type 2 diabetic cases using administrative data: a tree-structured model.

PubMed

Lo-Ciganic, Weihsuan; Zgibor, Janice C; Ruppert, Kristine; Arena, Vincent C; Stone, Roslyn A

2011-05-01

To date, few administrative diabetes mellitus (DM) registries have distinguished type 1 diabetes mellitus (T1DM) from type 2 diabetes mellitus (T2DM). Using a classification tree model, a prediction rule was developed to distinguish T1DM from T2DM in a large administrative database. The Medical Archival Retrieval System at the University of Pittsburgh Medical Center included administrative and clinical data from January 1, 2000, through September 30, 2009, for 209,647 DM patients aged ≥18 years. Probable cases (8,173 T1DM and 125,111 T2DM) were identified by applying clinical criteria to administrative data. Nonparametric classification tree models were fit using TIBCO Spotfire S+ 8.1 (TIBCO Software), with model size based on 10-fold cross validation. Sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of T1DM were estimated. The main predictors that distinguished T1DM from T2DM are age <40 years; International Classification of Disease, 9th revision, codes of T1DM or T2DM diagnosis; inpatient oral hypoglycemic agent use; inpatient insulin use; and episode(s) of diabetic ketoacidosis diagnosis. Compared with a complex clinical algorithm, the tree-structured model to predict T1DM had 92.8% sensitivity, 99.3% specificity, 89.5% PPV, and 99.5% NPV. The preliminary predictive rule appears to be promising. Being able to distinguish between DM subtypes in administrative databases will allow large-scale subtype-specific analyses of medical care costs, morbidity, and mortality. © 2011 Diabetes Technology Society.

Summer temperature variability across four urban neighborhoods in Knoxville, Tennessee, USA

NASA Astrophysics Data System (ADS)

Ellis, Kelsey N.; Hathaway, Jon M.; Mason, Lisa Reyes; Howe, David A.; Epps, Thomas H.; Brown, Vincent M.

2017-02-01

The urban heat island (UHI) is a well-documented effect of urbanization on local climate, identified by higher temperatures compared to surrounding areas, especially at night and during the warm season. The details of a UHI are city-specific, and microclimates may even exist within a given city. Thus, investigating the spatiotemporal variability of a city's UHI is an ongoing and critical research need. We deploy ten weather stations across Knoxville, Tennessee, to analyze the city's UHI and its differential impacts across urban neighborhoods: two each in four neighborhoods, one in more dense tree cover and one in less dense tree cover, and one each in downtown Knoxville and Ijams Nature Center that serve as control locations. Three months of temperature data (beginning 2 July 2014) are analyzed using paired-sample t tests and a three-way analysis of variance. Major findings include the following: (1) Within a given neighborhood, tree cover helps negate daytime heat (resulting in up to 1.19 ∘C lower maximum temperature), but does not have as large of an influence on minimum temperature; (2) largest temperature differences between neighborhoods occur during the day (0.38-1.16 ∘C difference), but larger differences between neighborhoods and the downtown control occur at night (1.04-1.88 ∘C difference); (3) presiding weather (i.e., air mass type) has a significant, consistent impact on the temperature in a given city, and lacks the differential impacts found at a larger-scale in previous studies; (4) distance from city center does not impact temperature as much as land use factors. This is a preliminary step towards informing local planning with a scientific understanding of how mitigation strategies may help minimize the UHI and reduce the effects of extreme weather on public health and well-being.

Updates on Water Use of Pistachio Orchards Grown in the San Joaquin Valley of California on Saline Soils

NASA Astrophysics Data System (ADS)

Zaccaria, Daniele; Marino, Giulia; Whiting, Michael; Sanden, Blake; Ferguson, Louise; Lampinen, Bruce; Kent, Eric; Snyder, Richard; Grattan, Stephen; Little, Cayle

2017-04-01

Pistachio acreage is rapidly expanding in California thanks to its economic profitability and capacity to grow and produce in salt-affected soils. Our team at University of California is updating information on actual water use (ET) of mature pistachio orchards grown on saline soils under micro-irrigation methods. Actual Evapotranspiration (ETa) and Crop Coefficients (Ka) were determined for the 2015 and 2016 crop seasons on four pistachio orchards grown in the San Joaquin Valley (SJV) on grounds with increasing levels of soil-water salinity, using the residual of energy balance method with a combination of eddy covariance and surface renewal equipment. Tree canopy cover, light interception, and plant water status across the orchards were also measured and evaluated. Our preliminary results show that salinity strongly affects the tree water use, resulting in 10-30% less ET for medium to high salt-affected soils. Salinity also showed a strong effect on tree water status and light interception, as suggested by values of the Midday Stem Water Potential (ΨSWP) around 10 to 15-bar lower in salt-affected than in the control orchard, and by the intercepted Photosynthetic Active Radiation (PAR) decreasing from 75% in the control orchard to 25% in the severely salt affected grounds. The crop coefficient values we observed in this study are lower than those commonly used for irrigation scheduling in the SJV, suggesting that pistachio growers could better tailor irrigation management to the actual site-specific orchard conditions (e.g. canopy features and soil-water salinity) if they are provided updated information. Improved irrigation practices could likely lead to significant water savings and thus improve the resource-efficiency and competitiveness of pistachio production in the SJV. Keywords: Pistacia vera L., salinity, stem water potential, surface renewal, canopy cover.

Ratite oils promote keratinocyte cell growth and inhibit leukocyte activation.

PubMed

Bennett, Darin C; Leung, Gigi; Wang, Eddy; Ma, Sam; Lo, Blanche K K; McElwee, Kevin J; Cheng, Kimberly M

2015-09-01

Traditionally, native Australian aborigines have used emu oil for the treatment of inflammation and to accelerate wound healing. Studies on mice suggest that topically applied emu oil may have anti-inflammatory properties and may promote wound healing. We investigated the effects of ratite oils (6 emu, 3 ostrich, 1 rhea) on immortalized human keratinocytes (HaCaT cells) in vitro by culturing the cells in media with oil concentrations of 0%, 0.5%, and 1.0%. Peking duck, tea tree, and olive oils were used as comparative controls. The same oils at 0.5% concentration were evaluated for their influence on peripheral blood mononuclear cell (PBMC) survival over 48 hr and their ability to inhibit IFNγ production in PBMCs activated by phytohemagglutinin (PHA) in ELISpot assays. Compared to no oil control, significantly shorter population doubling time durations were observed for HaCaT cells cultured in emu oil (1.51×faster), ostrich oil (1.46×faster), and rhea oil (1.64×faster). Tea tree oil demonstrated significant antiproliferative activity and olive oil significantly prolonged (1.35×slower) cell population doubling time. In contrast, almost all oils, particularly tea tree oil, significantly reduced PBMC viability. Different oils had different levels of inhibitory effect on IFNγ production with individual emu, ostrich, rhea, and duck oil samples conferring full inhibition. This preliminary investigation suggests that emu oil might promote wound healing by accelerating the growth rate of keratinocytes. Combined with anti-inflammatory properties, ratite oil may serve as a useful component in bandages and ointments for the treatment of wounds and inflammatory skin conditions. © 2015 Poultry Science Association Inc.

Preliminary bathymetry of Blackstone Bay and Neoglacial changes of Blackstone Glaciers, Alaska

USGS Publications Warehouse

Post, Austin

1980-01-01

Preliminary bathymetry (at 1:20,000 scale) and scientific studies of Blackstone Bay Alaska, by the Research Vessel Growler in 1978 disclose that the head of the bay consists of two basins separated by Willard Island and a submarine ridge. Both basins are closed on the north by terminal-moraine bars where Blackstone Glacier and its tributaries terminated as recently as about A.D. 1350; a carbon-14 date of 580 years before present on Badger Point, and old trees farther up the bay, disclose that the glaciers retreated to two narrow inlets at the head of the bay before 1400. The inlets were still glacier-covered until at least 1909. Glaciers in both inlets have continued to retreat; at present they terminate at the head of tidewater, where they discharge small icebergs. Only relatively thin sediments have accumulated in the eastern basin south of the terminal-moraine bar, and most of the bottom is hard and irregular as disclosed by soundings and profiles. The northern part of Blackstone Bay is very deep; at more than 1,100 feet below sea level a large, level accumulation of sediment is present which is presumably as much as 1,000 feet deep and has been accumulating since late Pleistocene glaciers retreated. (USGS)

Preliminary assessment of using tree-tissue analysis and passive-diffusion samplers to evaluate trichloroethene contamination of ground water at Site SS-34N, McChord Air Force Base, Washington, 2001

USGS Publications Warehouse

Cox, S.E.

2002-01-01

Two low-cost innovative sampling procedures for characterizing trichloroethene (TCE) contamination in ground water were evaluated for use at McChord Air Force Base (AFB) by the U.S. Geological Survey, in cooperation with the U.S. Air Force McChord Air Force Base Installation Restoration Program, in 2001. Previous attempts to characterize the source of ground-water contamination in the heterogeneous glacial outwash aquifer at McChord site SS-34N using soil-gas surveys, direct-push exploration, and more than a dozen ground-water monitoring wells have had limited success. The procedures assessed in this study involved analysis of tree-tissue samples to map underlying ground-water contamination and deploying passive-diffusion samplers to measure TCE concentrations in existing monitoring wells. These procedures have been used successfully at other U.S. Department of Defense sites and have resulted in cost avoidance and accelerated site characterization. Despite the presence of TCE in ground water at site SS-34N, TCE was not detected in any of the 20 trees sampled at the site during either early spring or late summer sampling. The reason the tree tissue procedure was not successful at the McChord AFB site SS-34N may have been due to an inability of tree roots to extract moisture from a water table 30 feet below the land surface, or that concentrations of TCE in ground water were not large enough to be detectable in the tree tissue at the sampling point. Passive-diffusion samplers were placed near the top, middle, and bottom of screened intervals in three monitoring wells and TCE was observed in all samplers. Concentrations of TCE from the passive-diffusion samplers were generally similar to concentrations found in samples collected in the same wells using conventional pumping methods. In contrast to conventional pumping methods, the collection of ground-water samples using the passive-diffusion samples did not generate waste purge water that would require hazardous-waste disposal. In addition, the results from the passive-diffusion samples may show that TCE concentrations are stratified across some screened intervals. The overall results of the limited test of passive-diffusion samplers at site SS-34N were similar to more detailed tests conducted at other contaminated sites across the country and indicate that further evaluation of the use of passive-diffusion samplers at McChord site SS-34N is warranted.

Detecting moisture status of pecan orchards and the potential of remotely-sensed surface reflectance data

NASA Astrophysics Data System (ADS)

Othman, Yahia Abdelrahman

Demand for New Mexico's limited water resources coupled with periodic drought has increased the need to schedule irrigation of pecan orchards based on tree water status. The overall goal of this research was to develop advanced tree water status sensing techniques to optimize irrigation scheduling of pecan orchards. To achieve this goal, I conducted three studies in the La Mancha and Leyendecker orchards, both mature pecan orchards located in the Mesilla Valley, New Mexico. In the first study, I screened leaf-level physiological changes that occurred during cyclic irrigation to determine parameters that best represented changes in plant moisture status. Then, I linked plant physiological changes to remotely-sensed surface reflectance data derived from Landsat Thematic Mapper (TM) and Enhanced Thematic Mapper (ETM+). In the second study, I assessed the impact of water deficits that developed during the flood irrigation dry-down cycles on photosynthesis (A) and gas exchange and established preliminary water deficit thresholds of midday stem water potential (Psi smd) critical to A and gas exchange of pecans. In a third study, I investigated whether hyperspectral data obtained from a handheld spectroradiometer and multispectral remotely-sensed data derived from Landsat 7 ETM+ and Landsat 8 Operational Land Imager (OLI) could detect moisture status in pecans during cyclic flood irrigations. I conducted the first study simultaneously in both orchards. Leaf-level physiological responses and remotely-sensed surface reflectance data were collected from trees that were either well watered or in water deficit. Midday stem water potential was the best leaf-level physiological response to detect moisture status in pecans. Multiple linear regression between Psismd and vegetation indices revealed a significant relationship (R 2 = 0.54) in both orchards. Accordingly, I concluded that remotely-sensed multispectral data form Landsat TMETM+ holds promise for detecting the moisture status of pecans. I conducted the second study simultaneously on the same mature pecan orchards that were used in the first study. Photosynthesis and gas exchange were assessed at Psismd of -0.4 to -2.0 MPa. This study established preliminary values of Psismd that significantly impacted A and gas exchange of field-grown pecans. I recommended that pecan orchards be maintained at Psismd that ranged between -0.80 to -0.90 MPa to prevent significant reductions in A and gas exchange. Broken-line analysis revealed that A remained relatively constant when Psismd was above -0.65 MPa. Conversely, there was linear positive relationship between Psi smd and A when Psismd was less than -0.65 MPa. In the third study, again conducted on both orchards, leaf-level physiological measurements and remotely-sensed data were taken at Psismd levels of -0.40 to -0.85 MPa, -0.95 to -1.45 MPa , and -1.5 to -2.0 MPa. Hyperspectral reflectance indices (from handheld spectroradiometer) detected moisture status in pecan trees better than multispectral reflectance indices (from Landsat ETM+OLI). Vegetation moisture index-I (VMI-I) and vegetation moisture index-II (VMI-II) significantly correlated with Psismd (VMI-I, 0.88 > r > 0.87; VMI-II, -0.68 > r > -0.65). Vegetation moisture index-I Boxplot analysis did not clearly separate moderate water status (-0.95 to -1.45 MPa) at La Mancha, but did so at Leyendecker. However, multispectral reflectance indices had a limited capacity to precisely detect the moderate water status at both orchards (the time when A declined by 15 - 40 %). Given that Psi smd of-0.90 to -1.45 MPa is a critical range for irrigating pecans, I concluded that vegetation indices derived only from hyperspectral reflectance data could be used to detect plant physiological responses that are related to plant water status.

Leapfrogging of tree species provenances? Interaction of microclimate and genetics on upward shifts in tree species' range limits

NASA Astrophysics Data System (ADS)

Reinhardt, K.; Castanha, C.; Germino, M. J.; Kueppers, L. M.

2011-12-01

The elevation limit of tree growth (alpine treeline) is considered to be constrained by environmental (i.e., thermal) and genetic (i.e., inability to adapt to climatic conditions) limitations to growth. Warming conditions due to climate change are predicted to cause upward shifts in the elevation of alpine treelines, through relief of cold-induced physiological limitations on seedling recruitment beyond current treeline boundaries. To determine how genetics and climate may interact to affect seedling establishment, we transplanted recently germinated seedlings from high- and low-elevation provenances (HI and LO, respectively) of Pinus flexilis in common gardens arrayed along an elevation and canopy gradient from subalpine forest into the alpine zone at Niwot Ridge, CO. We compared differences in microclimate and seedling ecophysiology among sites and between provenances. During the first summer of growth, frequently cloudy skies resulted in similar solar radiation incidence and air and soil temperatures among sites, despite nearly a 500 m-span in elevation across all sites. Preliminary findings suggest that survival of seedlings was similar between the lowest and highest elevations, with greater survival of LO (60%) compared to HI (40%) seedlings at each of these sites. Photosynthesis, carbon balance (photosynthesis/respiration), and conductance increased more than 2X with elevation for both provenances, and were 35-77% greater in LO seedlings compared to HI seedlings. There were no differences in dark-adapted chlorophyll fluorescence (Fv/Fm) among sites or between provenances. However, in a common-garden study at low elevation, we observed no differences in carbon or water relations between two naturally-germinated mitochondrial haplotypes of P. flexilis (of narrow and wide-ranging distributions). We did observe water-related thresholds on seedling carbon balance and survival that occurred when soil volumetric water content dropped below 10% and seedling water potentials went below -4 MPa. Our preliminary results suggest that for high-elevation conifer seedlings such as P. flexilis: 1) individuals can survive and even have enhanced physiological performance at and above treeline when/where clouds or other conditions minimize factors like cold-induced photoinhibition; 2) in the field, provenances selected for aboveground growth may out-perform those selected for stress-resistance in the absence of harsh climatic conditions, even well above the species' range limits in the alpine; 3) water, and not thermal, limitations might explain treeline altitude in this particular mountain range; 4) forest genetics may be important to understanding and managing species' range adjustments due to climate change.

Manned space flight nuclear system safety. Volume 3: Reactor system preliminary nuclear safety analysis. Part 2: Accident Model Document (AMD)

NASA Technical Reports Server (NTRS)

1972-01-01

The Accident Model Document is one of three documents of the Preliminary Safety Analysis Report (PSAR) - Reactor System as applied to a Space Base Program. Potential terrestrial nuclear hazards involving the zirconium hydride reactor-Brayton power module are identified for all phases of the Space Base program. The accidents/events that give rise to the hazards are defined and abort sequence trees are developed to determine the sequence of events leading to the hazard and the associated probabilities of occurence. Source terms are calculated to determine the magnitude of the hazards. The above data is used in the mission accident analysis to determine the most probable and significant accidents/events in each mission phase. The only significant hazards during the prelaunch and launch ascent phases of the mission are those which arise form criticality accidents. Fission product inventories during this time period were found to be very low due to very limited low power acceptance testing.

Declining snowpack and forest productivity in a montane ecosystem in the Northern Rocky Mountains

NASA Astrophysics Data System (ADS)

Hu, J.; Clute, T.; Simpson, T.; Hoylman, Z. H.; Jencso, K. G.

2016-12-01

Across the western U.S., declining snowpacks have increased drought, leading to reduced productivity rates in high elevation forests. As climate projections predict decreases in the ratio of snow/rainfall by the end of the century, this shift in the mode of precipitation could potentially lead to further decreases in forest productivity. However, different tree species across the montane ecosystem might respond differently to these shifts; while some tree species might experience decreased growth rates, other species might capitalize on the extra rainfall and increase growth rates. Furthermore, the landscape topography will also play an important role by modulating the sensitivity of different trees to these changing precipitation regimes. In this study, we examined the long-term patterns of plant water source use across an elevational gradient in western Montana. Because snow and rain have distinct oxygen isotopic values, we analyzed the δ18O of cellulose from tree rings at annual time scales to track changes in source water in two main species: Pseudotsuga menziezii and Pinus Ponderosa at both high and low elevation. We also used the same cores to link growth rate with the dominant source water. We first compared the annual changes in δ18O of cellulose with available SNOTEL and Snow Course data. We found poor agreement between snowpack depth and δ18O of cellulose prior to 1980. However, after 1980, we found a strong negative relationship; small snowpack years resulted in enriched δ18O of cellulose values while large snowpack years resulted in depleted δ18O of cellulose values. We then used the Craig-Gordon model along with our input of δ18O of cellulose to back calculate source water and found strong agreement between modeled versus measured values. Since the δ18O of cellulose also captures the atmospheric conditions, we then tested the sensitivity of the Craig-Gordon model to changes in relative humidity versus source water. These preliminary results a strong source water signal recorded in the δ18O of cellulose; furthermore, these results suggest that since the 1980's, the trees are consistently using less snowmelt as a water source, coinciding with decreasing snowpack records throughout the western U.S.

Nuclear introns outperform mitochondrial DNA in inter-specific phylogenetic reconstruction: Lessons from horseshoe bats (Rhinolophidae: Chiroptera).

PubMed

Dool, Serena E; Puechmaille, Sebastien J; Foley, Nicole M; Allegrini, Benjamin; Bastian, Anna; Mutumi, Gregory L; Maluleke, Tinyiko G; Odendaal, Lizelle J; Teeling, Emma C; Jacobs, David S

2016-04-01

Despite many studies illustrating the perils of utilising mitochondrial DNA in phylogenetic studies, it remains one of the most widely used genetic markers for this purpose. Over the last decade, nuclear introns have been proposed as alternative markers for phylogenetic reconstruction. However, the resolution capabilities of mtDNA and nuclear introns have rarely been quantified and compared. In the current study we generated a novel ∼5kb dataset comprising six nuclear introns and a mtDNA fragment. We assessed the relative resolution capabilities of the six intronic fragments with respect to each other, when used in various combinations together, and when compared to the traditionally used mtDNA. We focused on a major clade in the horseshoe bat family (Afro-Palaearctic clade; Rhinolophidae) as our case study. This old, widely distributed and speciose group contains a high level of conserved morphology. This morphological stasis renders the reconstruction of the phylogeny of this group with traditional morphological characters complex. We sampled multiple individuals per species to represent their geographic distributions as best as possible (122 individuals, 24 species, 68 localities). We reconstructed the species phylogeny using several complementary methods (partitioned Maximum Likelihood and Bayesian and Bayesian multispecies-coalescent) and made inferences based on consensus across these methods. We computed pairwise comparisons based on Robinson-Foulds tree distance metric between all Bayesian topologies generated (27,000) for every gene(s) and visualised the tree space using multidimensional scaling (MDS) plots. Using our supported species phylogeny we estimated the ancestral state of key traits of interest within this group, e.g. echolocation peak frequency which has been implicated in speciation. Our results revealed many potential cryptic species within this group, even in taxa where this was not suspected a priori and also found evidence for mtDNA introgression. We demonstrated that by using just two introns one can recover a better supported species tree than when using the mtDNA alone, despite the shorter overall length of the combined introns. Additionally, when combining any single intron with mtDNA, we showed that the result is highly similar to the mtDNA gene tree and far from the true species tree and therefore this approach should be avoided. We caution against the indiscriminate use of mtDNA in phylogenetic studies and advocate for pilot studies to select nuclear introns. The selection of marker type and number is a crucial step that is best based on critical examination of preliminary or previously published data. Based on our findings and previous publications, we recommend the following markers to recover phylogenetic relationships between recently diverged taxa (<20 My) in bats and other mammals: ACOX2, COPS7A, BGN, ROGDI and STAT5A. Copyright © 2016 Elsevier Inc. All rights reserved.

Quantifying the variability of snowpack properties and processes in a small-forested catchment representative of the boreal zone

NASA Astrophysics Data System (ADS)

Parajuli, A.; Nadeau, D.; Anctil, F.; Parent, A. C.; Bouchard, B.; Jutras, S.

2017-12-01

In snow-fed catchments, it is crucial to monitor and to model snow water equivalent (SWE), particularly to simulate the melt water runoff. However, the distribution of SWE can be highly heterogeneous, particularly within forested environments, mainly because of the large variability in snow depths. Although the boreal forest is the dominant land cover in Canada and in a few other northern countries, very few studies have quantified the spatiotemporal variability of snow depths and snowpack dynamics within this biome. The objective of this paper is to fill this research gap, through a detailed monitoring of snowpack dynamics at nine locations within a 3.57 km2 experimental forested catchment in southern Quebec, Canada (47°N, 71°W). The catchment receives 6 m of snow annually on average and is predominantly covered with balsam fir stand with some traces of spruce and white birch. In this study, we used a network of nine so-called `snow profiling stations', providing automated snow depth and snowpack temperature profile measurements, as well as three contrasting sites (juvenile, sapling and open areas) where sublimation rates were directly measured with flux towers. In addition, a total of 1401 manual snow samples supported by 20 snow pits measurements were collected throughout the winter of 2017. This paper presents some preliminary analyses of this unique dataset. Simple empirical relations relying SWE with easy-to-determine proxies, such as snow depths and snow temperature, are tested. Then, binary regression trees and multiple regression analysis are used to model SWE using topographic characteristics (slope, aspect, elevation), forest features (tree height, tree diameter, forest density and gap fraction) and meteorological forcing (solar radiation, wind speed, snow-pack temperature profile, air temperature, humidity). An analysis of sublimation rates comparing open area, saplings and juvenile forest is also presented in this paper.

Isolation and identification of plant phenolic compounds in birch leaves: Air pollution stress and leaf phenolics

NASA Astrophysics Data System (ADS)

Loponen, Jyrki Mikael

Chromatographic (analytical and preparative HPLC), chemical (hydrolysis) and spectroscopic (UV, 1H NMR, 13C NMR and MS) techniques proved to be suitable tools for the structure identification of plant phenolic compounds. More than 30 individual phenolic compounds were detected and quantified. Detailed information of the structures of individual compounds was determined after isolation from birch leaves. Ten flavonoid glycosides were identified. Two of them, myricetin-3-O-α-L-(acetyl)-rhamnopyranoside and quercetin-3-O-α-L-(4/prime'-O-acetyl)- rhamnopyranoside, have been rarely found in birch leaves. Further, some characterized major phenolics with non- flavonoid structures in our study were 1-O-galloyl- β-D-(2-O-acetyl)-glucopyranose, gallic, chlorogenic, neochlorogenic, cis- and trans-forms of 3- and 5-p-coumaroylquinic acids. The presence of gallotannin group was evidenced by strong positive correlations between concentrations of these gallotannins (preliminary identified by HPLC and UV spectra) and the protein precipitation capacity of extracts. Content of gallotannins decreased with leaf growth and maturation. It is known that concentrations of phenolic compounds regularly increase in slowly growing stressed plants and therefore, it is natural that they are also sensitive to different forms of air pollution. Total content and the contents of some individual phenolics correlated negatively with the distance from the pollution source in our study area. In addition to comparing absolute concentrations of compounds in question, the within-tree correlations or within-tree variations of the relevant compounds between polluted and control areas were an alternative approach. Differences in pairwise correlations between the investigated leaf phenolic compounds indicated the competition between some gallotannins and p-coumaroylquinic acids on the polluted but not on the control site. Air pollution seems to be a stress factor for birch trees associated with accumulation, variability, as well as between-compound correlations of individual phenolics in leaves. Effects of atmospheric stress factors on phenolics with different structures result from the activation of the shikimate pathway.

Molecular Insights into Plant-Microbial Processes and Carbon Storage in Mangrove Ecosystems

NASA Astrophysics Data System (ADS)

Romero, I. C.; Ziegler, S. E.; Fogel, M.; Jacobson, M.; Fuhrman, J. A.; Capone, D. G.

2009-12-01

Mangrove forests, in tropical and subtropical coastal zones, are among the most productive ecosystems, representing a significant global carbon sink. We report new molecular insights into the functional relationship among microorganisms, mangrove trees and sediment geochemistry. The interactions among these elements were studied in peat-based mangrove sediments (Twin Cays, Belize) subjected to a long-term fertilization experiment with N and P, providing an analog for eutrophication. The composition and δ13C of bacterial PLFA showed that bacteria and mangrove trees had similar nutrient limitation patterns (N in the fringe mangrove zone, P in the interior zone), and that fertilization with N or P can affect bacterial metabolic processes and bacterial carbon uptake (from diverse mangrove sources including leaf litter, live and dead roots). PCR amplified nifH genes showed a high diversity (26% nifH novel clones) and a remarkable spatial and temporal variability in N-fixing microbial populations in the rhizosphere, varying primarily with the abundance of dead roots, PO4-3 and H2S concentrations in natural and fertilized environments. Our results indicate that eutrophication of mangrove ecosystems has the potential to alter microbial organic matter remineralization and carbon release with important implications for the coastal carbon budget. In addition, we will present preliminary data from a new study exploring the modern calibration of carbon and hydrogen isotopes of plant leaf waxes as a proxy recorder of past environmental change in mangrove ecosystems.

MASSAHAKE whole tree harvesting method for pulp raw-material and fuel -- R&D in 1993--1998

DOE Office of Scientific and Technical Information (OSTI.GOV)

Asplund, D.A.; Ahonen, M.A.

1993-12-31

In Finland biofuels and hydropower are the only indigenous fuels available. Peat, wood and wood derived fuels form about 18% of total primary energy requirement. The largest wood and wood fuel user in Finland is wood processing industry, paper, pulp, sawmills. Due to silvicultural activities the growth of forests has developed an instant need for first thinnings. This need is about 12% of total stem wood growth. With conventional harvesting methods this would produce about 8 mill. m{sup 3} pulp raw material and 2 mill. m{sup 3} wood fuel. By using integrated harvesting methods about 12 mill. m{sup 3} pulpmore » raw material and 8 mill. m{sup 3} (about 1, 3 mill. toe) fuel could be produced. At the moment, there is no economically profitable method for harvesting first thinning trees for industrial use or energy production. Hence, there are a few ongoing research projects aiming at solving the question of integrated harvesting. MASSAHAKE chip purification method has been under R&D since 1987. Research with continuous experimental line (capacity 5--10 loose-m{sup 3}) has been done in 1991 and 1992. The research has concentrated on pine whole tree chip treatment, but preliminary tests with birch whole tree chips has been done. The experiment line will be modified for birth whole tree chips during 1993. Based on the research results more than 60% of the whole tree chips can be separated to pulp raw material with < 1% bark content. This amount is 1.5--2 times more than with present technology. The yield of fuel fraction is 2--4 times higher compared to present methods. Fuel fraction is homogeneous and could be used in most furnaces for energy production. By replacing fossil fuels with wood fuel in energy production it is possible to reduce CO{sub 2}-emissions significantly. This paper presents the wood fuel research areas in Finland and technical potential of MASSAHAKE-method including the plant for building a demonstration plant based on this technology.« less

Intra-Urban Variability in Elemental Carbon Deposition to Tree Canopies

NASA Astrophysics Data System (ADS)

Barrett, T. E.; Ponette-González, A.; Rindy, J. E.; Sheesley, R. J.

2017-12-01

Urban areas cover <1% of the earth's land surface, yet they represent globally significant sources of atmospheric elemental carbon (EC). A product of incomplete fossil fuel, biofuel, and biomass combustion, EC is a powerful climate-forcing agent and a significant component of fine particulate matter in urban atmospheres. Thus, understanding the factors that govern EC removal in urban areas could help mitigate climate change, while improving air quality for urban residents. EC particles can be removed from the atmosphere in precipitation (wet and fog deposition) or they can settle directly onto receptor surfaces (dry deposition). Only limited measurements indicate that EC deposition is higher in urban than in rural and remote regions. However, EC deposition likely exhibits considerable intra-urban variability, with tree canopies serving as potentially important sinks for EC on the cityscape. The goal of this research is to quantify spatial variability in total (wet + dry) EC deposition to urban tree canopies in the Dallas-Fort Worth Metroplex. Using a stratified non-random sampling design, 41 oak trees (22 post oak (Quercus stellata) and 19 live oak (Quercus virginiana)) were selected near (<100 m) and far from roads (>100 m) for measurements of throughfall (water that falls from the canopy to the forest floor). Additionally, 16 bulk rainfall samplers were deployed in grassy areas with no canopy cover. Results from one rain event indicate a volume weighted mean concentration of 83 µg EC L-1 in post oak throughfall, 36 µg EC L-1 in live oak throughfall, and 4 µg EC L-1 in bulk rainfall. Total EC deposition to oak tree canopies was 2.0 ± 2.1 (SD) mg m-2 for post oak and 0.7 ± 0.3 mg m-2 for live oak. Bulk rainfall deposition was 0.08 ± 0.1 mg m-2. Our preliminary findings show that trees are effective urban air filters, removing 9-25 times more EC from the atmosphere than rainwater alone. Resolving surface controls on atmospheric EC removal is key to developing and assessing near-term climate and air quality mitigation strategies.

Detecting trends in tree growth: not so simple.

PubMed

Bowman, David M J S; Brienen, Roel J W; Gloor, Emanuel; Phillips, Oliver L; Prior, Lynda D

2013-01-01

Tree biomass influences biogeochemical cycles, climate, and biodiversity across local to global scales. Understanding the environmental control of tree biomass demands consideration of the drivers of individual tree growth over their lifespan. This can be achieved by studies of tree growth in permanent sample plots (prospective studies) and tree ring analyses (retrospective studies). However, identification of growth trends and attribution of their drivers demands statistical control of the axiomatic co-variation of tree size and age, and avoiding sampling biases at the stand, forest, and regional scales. Tracking and predicting the effects of environmental change on tree biomass requires well-designed studies that address the issues that we have reviewed. Copyright © 2012 Elsevier Ltd. All rights reserved.

Tree species' responses to throughfall removal experiments superimposed on a natural drought event in two contrasting humid temperate forests in New Hampshire, USA

NASA Astrophysics Data System (ADS)

Jennings, Katie; McIntire, Cameron; Coble, Adam; Vandeboncoeur, Matthew; Rustad, Lindsay; Templer, Pamela; Absbjornsen, Heidi

2017-04-01

Climate change is likely to affect Northeastern U.S. forests through the increased frequency and severity of drought events. However, our understanding of how these humid temperate forests will respond to moderate to extreme droughts is limited. Given the important role that these forests play in providing ecosystem services and in supplying forest products, enhancing our knowledge about the impacts of drought is critical to guiding forest management and climate change adaptation efforts. We conducted 50% throughfall removal experiments at two contrasting sites in the Northeastern US (Hubbard Brook Experimental Forest and Thompson Farm, NH, USA), which were superimposed on the severe natural drought occurring in August-September 2016. Preliminary analysis suggests that the two sites respond differently to simulated drought. Pinus strobus trees at Thompson Farm reduced their transpiration rates in response to both the natural and experimental drought, particularly evident during a 5-day period at the height of the drought were transpiration nearly ceased. Both P. strobus and Quercus rubra trees increased their water use efficiency in response to reduced soil water availability, with Q. rubra allowing its midday water potential to reach more negative values, consistent with its more drought tolerant strategy compared to P. strobus. In contrast, we did not detect any significant differences in tree transpiration rates or growth in the dominant tree species, Acer rubrum, in response to the experimental drought treatment at Hubbard Brook. However, both soil respiration and fine root biomass production were lower in the drought treatment plots relative to the control plots at Hubbard Brook. We plan to continue these throughfall removal experiments for at least two more years to better understand the implications of future drought in these humid temperate forests and identify differences in species' physiological adaptations and threshold responses.

Stable Carbon Isotopes in Treerings; Revisiting the Paleocloud Proxy.

NASA Astrophysics Data System (ADS)

Gagen, M.; Zorita, E.; Dorado Liñán, I.; Loader, N.; McCarroll, D.; Robertson, I.; Young, G.

2017-12-01

The long term relationship between cloud cover and temperature is one of the most important climate feedbacks contributing to determining the value of climate sensitivity. Climate models still reveal a large spread in the simulation of changes in cloud cover under future warming scenarios and clarity might be aided by a picture of the past variability of cloudiness. Stable carbon isotope ratios from tree ring records have been successfully piloted as a palaeocloud proxy in geographical areas traditionally producing strong dendroclimatological reconstructions (high northern latitudes in the Northern Hemisphere) and with some notable successes elsewhere too. An expansion of tree-ring based palaeocloud reconstructions might help to estimate past variations of cloud cover in periods colder or warmer than the 20th century, providing a way to test model test this specific aspect. Calibration with measured instrumental sunshine and cloud data reveals stable carbon isotope ratios from tree rings as an indicator of incoming short wave solar radiation (SWR) in non-moisture stressed sites, but the statistical identification of the SWR signal is hampered by its interannual co-variability with air temperature during the growing season. Here we present a spatio-temporal statistical analysis of a multivariate stable carbon isotope tree ring data set over Europe to assess its usefulness to reconstruct past solar radiation changes. The interannual co-variability of the tree ring records stronger covariation with SWR than with air temperature. The resulting spatial patterns of interannual co-variability are strongly linked to atmospheric circulation in a physically consistent manner. However, the multidecadal variations in the proxy records show a less physically coherent picture. We explore whether atmospheric corrections applied to the proxy series are contributing to differences in the multi decadal signal and investigate whether multidecadal variations in soil moisture perturb the SWR. Preliminary results of strategies to bypass these problems are explored.

Potential effects of tree-to-shrub type conversion on streamflow in California's Sierra Nevada

NASA Astrophysics Data System (ADS)

Baguskas, S. A.; Bart, R.; Molinari, N.; Tague, C.; Moritz, M.

2014-12-01

There is widespread concern that changes in climate and fire regime may lead to vegetation change across California, which in turn may influence watershed hydrology. Although plant cover is known to affect numerous hydrological processes, sensitivities to vegetation type and spatial arrangement of species within watersheds are not well understood. The primary objective of our research was to generate mechanistically-based projections of how potential type conversion from forested to shrub dominated systems may affect streamflow. During the 2014 growing season, we measured ecophysiological responses (plant water status and leaf gas exchange rates) of two dominant tree and shrub species to changes in seasonal water availability at two sites within the southern Sierra Nevada Critical Zone Observatory. Plant physiological observations were used to parameterize a process-based eco-hydrological model, RHESSys. This model was used to evaluate the impact of changes in seasonal water availability and vegetation type-conversion on streamflow. Based on our field observations, shrubs and trees had similar access to water through the early part of the growing season (April-early June); however, by late July, available water to shrubs was twice that of trees (shrubs, -0.55 ± 0.08 MPa; trees, -1.07 ± 0.08 MPa, p<0.05). Likewise, maximum transpiration (E) and carbon assimilation (A) rates per unit leaf area were twice as high for shrubs then trees in July (shrubs, A= 21 ± 2.3 μmol m-2 s-1, E=6.6 ± 1.8 mmol m-2 s-1; trees, A=8.2 ± 1.9 μmol m-2 s-1, E=2.4 ± 0.3 mmol m-2 s-1). Preliminary modeled changes in streamflow following simulated vegetation conversion were found to affect both the timing and amount of discharge. Controls on pre vs. post-conversion streamflow included changes in interception, rooting depth, energy balance, and plant response to changes in seasonal water availability. Our research demonstrates how linking strategic field data collection and mechanistic ecohydrologic models can be used as a robust tool for assessing the potential impact of vegetation change on the water balance of an ecosystem. This is an increasingly valuable approach to inform management decisions focused on adapting strategies based on projected changes in climate.

Monte Carlo Simulation of Markov, Semi-Markov, and Generalized Semi- Markov Processes in Probabilistic Risk Assessment

NASA Technical Reports Server (NTRS)

English, Thomas

2005-01-01

A standard tool of reliability analysis used at NASA-JSC is the event tree. An event tree is simply a probability tree, with the probabilities determining the next step through the tree specified at each node. The nodal probabilities are determined by a reliability study of the physical system at work for a particular node. The reliability study performed at a node is typically referred to as a fault tree analysis, with the potential of a fault tree existing.for each node on the event tree. When examining an event tree it is obvious why the event tree/fault tree approach has been adopted. Typical event trees are quite complex in nature, and the event tree/fault tree approach provides a systematic and organized approach to reliability analysis. The purpose of this study was two fold. Firstly, we wanted to explore the possibility that a semi-Markov process can create dependencies between sojourn times (the times it takes to transition from one state to the next) that can decrease the uncertainty when estimating time to failures. Using a generalized semi-Markov model, we studied a four element reliability model and were able to demonstrate such sojourn time dependencies. Secondly, we wanted to study the use of semi-Markov processes to introduce a time variable into the event tree diagrams that are commonly developed in PRA (Probabilistic Risk Assessment) analyses. Event tree end states which change with time are more representative of failure scenarios than are the usual static probability-derived end states.

Preliminary Aeromagnetic Map of Joshua Tree National Park and Vicinity, Southern California

USGS Publications Warehouse

Langenheim, V.E.; Hill, P.L.

2010-01-01

This aeromagnetic map of Joshua Tree National Park and vicinity is intended to promote further understanding of the geology and structure in the region by serving as a basis for geophysical interpretations and by supporting geological mapping, water-resource investigations, and various topical studies. Local spatial variations in the Earth's magnetic field (evident as anomalies on aeromagnetic maps) reflect the distribution of magnetic minerals, primarily magnetite, in the underlying rocks. In many cases the volume content of magnetic minerals can be related to rock type, and abrupt spatial changes in the amount of magnetic minerals commonly mark lithologic or structural boundaries. Bodies of mafic and ultramafic rocks tend to produce the most intense magnetic anomalies, but such generalizations must be applied with caution because rocks with more felsic compositions, or even some sedimentary units, also can cause measurable magnetic anomalies. The database includes two ASCII files containing new aeromagnetic data and two ASCII files with point locations of the local maximum horizontal gradient derived from the aeromagnetic data. This metadata file describes the horizontal gradient locations derived from new and existing aeromagnetic data. This aeromagnetic map identifies magnetic features as a basis for geophysical interpretations; the gradients help define the edges of magnetic sources. This database updates geophysical information originally presented in smaller-scale formats and includes detailed aeromagnetic data collected by EON Geosciences, Inc.

Investigating Strain Transfer Along the Southern San Andreas Fault: A Geomorphic and Geodetic Study of Block Rotation in the Eastern Transverse Ranges, Joshua Tree National Park, CA

NASA Astrophysics Data System (ADS)

Guns, K. A.; Bennett, R. A.; Blisniuk, K.

2017-12-01

To better evaluate the distribution and transfer of strain and slip along the Southern San Andreas Fault (SSAF) zone in the northern Coachella valley in southern California, we integrate geological and geodetic observations to test whether strain is being transferred away from the SSAF system towards the Eastern California Shear Zone through microblock rotation of the Eastern Transverse Ranges (ETR). The faults of the ETR consist of five east-west trending left lateral strike slip faults that have measured cumulative offsets of up to 20 km and as low as 1 km. Present kinematic and block models present a variety of slip rate estimates, from as low as zero to as high as 7 mm/yr, suggesting a gap in our understanding of what role these faults play in the larger system. To determine whether present-day block rotation along these faults is contributing to strain transfer in the region, we are applying 10Be surface exposure dating methods to observed offset channel and alluvial fan deposits in order to estimate fault slip rates along two faults in the ETR. We present observations of offset geomorphic landforms using field mapping and LiDAR data at three sites along the Blue Cut Fault and one site along the Smoke Tree Wash Fault in Joshua Tree National Park which indicate recent Quaternary fault activity. Initial results of site mapping and clast count analyses reveal at least three stages of offset, including potential Holocene offsets, for one site along the Blue Cut Fault, while preliminary 10Be geochronology is in progress. This geologic slip rate data, combined with our new geodetic surface velocity field derived from updated campaign-based GPS measurements within Joshua Tree National Park will allow us to construct a suite of elastic fault block models to elucidate rates of strain transfer away from the SSAF and how that strain transfer may be affecting the length of the interseismic period along the SSAF.

Artificial Root Exudate System (ARES): a field approach to simulate tree root exudation in soils

NASA Astrophysics Data System (ADS)

Lopez-Sangil, Luis; Estradera-Gumbau, Eduard; George, Charles; Sayer, Emma

2016-04-01

The exudation of labile solutes by fine roots represents an important strategy for plants to promote soil nutrient availability in terrestrial ecosystems. Compounds exuded by roots (mainly sugars, carboxylic and amino acids) provide energy to soil microbes, thus priming the mineralization of soil organic matter (SOM) and the consequent release of inorganic nutrients into the rhizosphere. Studies in several forest ecosystems suggest that tree root exudates represent 1 to 10% of the total photoassimilated C, with exudation rates increasing markedly under elevated CO2 scenarios. Despite their importance in ecosystem functioning, we know little about how tree root exudation affect soil carbon dynamics in situ. This is mainly because there has been no viable method to experimentally control inputs of root exudates at field scale. Here, I present a method to apply artificial root exudates below the soil surface in small field plots. The artificial root exudate system (ARES) consists of a water container with a mixture of labile carbon solutes (mimicking tree root exudate rates and composition), which feeds a system of drip-tips covering an area of 1 m2. The tips are evenly distributed every 20 cm and inserted 4-cm into the soil with minimal disturbance. The system is regulated by a mechanical timer, such that artificial root exudate solution can be applied at frequent, regular daily intervals. We tested ARES from April to September 2015 (growing season) within a leaf-litter manipulation experiment ongoing in temperate deciduous woodland in the UK. Soil respiration was measured monthly, and soil samples were taken at the end of the growing season for PLFA, enzymatic activity and nutrient analyses. First results show a very rapid mineralization of the root exudate compounds and, interestingly, long-term increases in SOM respiration, with negligible effects on soil moisture levels. Large positive priming effects (2.5-fold increase in soil respiration during the growing season) were observed in absence of aboveground forest litter, with lower or no priming when the litter was present. Preliminary results show that soil microbial community is also significantly affected by ARES.

Biogeochemical cycles in a tropical lowland rainforest (La Reunion Island) developed on a basaltic flow : first results

NASA Astrophysics Data System (ADS)

Kirman, S.; Strasberg, D.; Grondin, V.; Meunier, J. D.

2001-12-01

La Reunion (Indian Ocean) is one of the last volcanic island that supports a lowland rainforest relatively unaffected by man. Contrary to other well known spots such as Hawaii, the biodiversity is still high. A project financed by the French Government (IRD and PNSE) is undertaken to determine the biogeochemical cycles of C and major elements in the Marelongue Natural Reserve. The studied site is located along the Piton de la Fournaise Volcano, on basaltic flows dated approximately around 500 y. The aim of the project is to better constrain the biogeochemical models of rainforest ecosystems. Here we present preliminary results on the relations between biodiversity and ecosystem productivity and mineral cycling. We measure, in a 1 ha permanent plot, the element content stored in the above ground biomass and the return of these elements to the soil. A total of 1079 trees (DBH {* } 10 cm) were identified and measured in the permanent plot. The biomass was estimated by an indirect method based on allometric relations from trees harvested in previous studies elsewhere. The calculated above ground biomass ranged from to 267 to 300 tha and only three species (Labourdonnaisia calophylloides, Nuxia verticillata and Agauria.salicifolia) represent more than 60% of that biomass. The litter production was measured by collecting every 15 days the fine litterfall on a 0.5 ha plot, from August 2000 to July 2001 and the estimated annual mean was 6.6 t/ha of which 74% were leaves. Again, two of the species (Labourdonnaisia calophylloidesa and Nuxia verticillata) contribute to nearly 60% of the total fine litterfall. Over the year, seasonal variations were observed and showed two peaks, one in January and one during the months of March and April. The first one can be attributed to the occurrence of a cyclone at 200km from the coast. The annual litterfall pattern is dominated by the litterfall of the two dominant canopy trees. The leaf mineral content was determined for 15 of the dominant species. The highest contents were found for Ca, Mg, K, Na and Si. Calculated annual fluxes of these elements were respectively 81 kghay; 24 kghay; 16 kghay; 11 kghay and 6 kghay kgha, and are highly dependent on the productivity of the two dominant tree species.

Sleep in amphibians and reptiles: a review and a preliminary analysis of evolutionary patterns.

PubMed

Libourel, Paul-Antoine; Herrel, Anthony

2016-08-01

Despite the ubiquitous nature of sleep, its functions remain a mystery. In an attempt to address this, many researchers have studied behavioural and electrophysiological phenomena associated with sleep in a diversity of animals. The great majority of vertebrates and invertebrates display a phase of immobility that could be considered as a sort of sleep. Terrestrial mammals and birds, both homeotherms, show two sleep states with distinct behavioural and electrophysiological features. However, whether these features have evolved independently in each clade or were inherited from a common ancestor remains unknown. Unfortunately, amphibians and reptiles, key taxa in understanding the evolution of sleep given their position at the base of the tetrapod and amniote tree, respectively, remain poorly studied in the context of sleep. This review presents an overview of what is known about sleep in amphibians and reptiles and uses the existing data to provide a preliminary analysis of the evolution of behavioural and electrophysiological features of sleep in amphibians and reptiles. We also discuss the problems associated with analysing existing data, as well as the difficulty in inferring homologies of sleep stages based on limited data in the context of an essentially mammalian-centric definition of sleep. Finally, we highlight the importance of developing comparative approaches to sleep research that may benefit from the great diversity of species with different ecologies and morphologies in order to understand the evolution and functions of sleep. © 2015 Cambridge Philosophical Society.

Audubon Tree Study Program.

ERIC Educational Resources Information Center

National Audubon Society, New York, NY.

Included are an illustrated student reader, "The Story of Trees," a leaders' guide, and a large tree chart with 37 colored pictures. The student reader reviews several aspects of trees: a definition of a tree; where and how trees grow; flowers, pollination and seed production; how trees make their food; how to recognize trees; seasonal changes;…

Leaf volatile compounds and the distribution of ant patrollingin an ant-plant protection mutualism: Preliminary results on Leonardoxa (Fabaceae: Caesalpinioideae) and Petalomyrmex(Formicidae: Formicinae)

NASA Astrophysics Data System (ADS)

Brouat, Carine; McKey, Doyle; Bessière, Jean-Marie; Pascal, Laurence; Hossaert-McKey, Martine

2000-12-01

While observations suggest that plant chemicals could be important in maintaining the specificity and permitting the functioning of ant-plant symbioses, they have been little studied. We report here the strongest evidence yet for chemical signalling between ants and plants in a specific ant-plant protection symbiosis. In the mutualism between Leonardoxa africana subsp. africana and Petalomyrmex phylax, ants continuously patrol young leaves, which are vulnerable to attacks by phytophagous insects. We provide experimental evidence for chemical mediation of ant attraction to young leaves in this system. By a comparative analysis of the related non-myrmecophytic tree L. africana subsp. gracilicaulis, we identify likely candidates for attractant molecules, and suggest they may function not only as signals but also as resources. We also propose hypotheses on the evolutionary origin of these plant volatiles, and of the responses to them by mutualistic ants.

A preliminary case-mix classification system for Medicare home health clients.

PubMed

Branch, L G; Goldberg, H B

1993-04-01

In this study, a hierarchical case-mix model was developed for grouping Medicare home health beneficiaries homogeneously, based on the allowed charges for their home care. Based on information from a two-page form from 2,830 clients from ten states and using the classification and regression trees method, a four-component model was developed that yielded 11 case-mix groups and explained 22% of the variance for the test sample of 1,929 clients. The four components are rehabilitation, special care, skilled-nurse monitoring, and paralysis; each are categorized as present or absent. The range of mean-allowed charges for the 11 groups in the total sample was $473 to $2,562 with a mean of $847. Of the six groups with mean charges above $1,000, none exceeded 5.2% of clients; thus, the high-cost groups are relatively rare.

Preliminary studies on nasal decongestant activity from the seed of the shea butter tree, Butyrospermum parkii.

PubMed

Tella, A

1979-05-01

1 The seed of Butyrospermum parkii yields shea butter which according to local traditional healers relieves inflammation of the nostrils. 2 Since there is as yet no absolutely satisfactory nasal decongestant in clinical use, it was decided to investigate the effects of shea butter in nasal congestion. The substance was prepared in the laboratory. 3 The human subjects used were those suffering from rhinitis with moderate to severe nasal congestion. They were divided into the test group which received shea butter, the control group which was treated with xylometazoline and the 'placebo' group which received white petroleum jelly B.P. 4 The results showed that nasal congestion was relieved more satisfactorily in the test group than in the other two groups. 5 It is concluded that shea butter may prove more efficacious in nasal congestion than conventional nasal drops.

Preliminary studies on nasal decongestant activity from the seed of the shea butter tree, Butyrospermum parkii.

PubMed Central

Tella, A

1979-01-01

1 The seed of Butyrospermum parkii yields shea butter which according to local traditional healers relieves inflammation of the nostrils. 2 Since there is as yet no absolutely satisfactory nasal decongestant in clinical use, it was decided to investigate the effects of shea butter in nasal congestion. The substance was prepared in the laboratory. 3 The human subjects used were those suffering from rhinitis with moderate to severe nasal congestion. They were divided into the test group which received shea butter, the control group which was treated with xylometazoline and the 'placebo' group which received white petroleum jelly B.P. 4 The results showed that nasal congestion was relieved more satisfactorily in the test group than in the other two groups. 5 It is concluded that shea butter may prove more efficacious in nasal congestion than conventional nasal drops. PMID:89854

Focusing on the big picture: urban vegetation and eco ...

EPA Pesticide Factsheets

Trees and vegetation can be key components of urban green infrastructure and green spaces such as parks and residential yards. Large trees, characterized by broad canopies, and high leaf and stem volumes, can intercept a substantial amount of stormwater while promoting evapotranspiration and reducing stormwater runoff and pollutant loads. Urban vegetation cover, height, and volume are likely to be affected not only by local climatic characteristics, but also by complex socio-economic dynamics resulting from management practices and resident’s preferences. We examine the benefits provided by private greenspace and present preliminary findings related to the climatic and socio-economic drivers correlated with structural complexity of residential urban vegetation. We use laser (LiDAR) and multispectral remotely-sensed data collected throughout 1400+ neighborhoods and 1.2+ million residential yards across 8 US cities to carry out this analysis. We discuss principles and opportunities to enhance stormwater management using residential greenspace, as well as the larger implications for decentralized stormwater management at city-wide scale. We discuss principles and opportunities to enhance stormwater management using residential greenspace, as well as the larger implications for decentralized stormwater management at city-wide scale.

Trees, bialgebras and intrinsic numerical algorithms

NASA Technical Reports Server (NTRS)

Crouch, Peter; Grossman, Robert; Larson, Richard

1990-01-01

Preliminary work about intrinsic numerical integrators evolving on groups is described. Fix a finite dimensional Lie group G; let g denote its Lie algebra, and let Y(sub 1),...,Y(sub N) denote a basis of g. A class of numerical algorithms is presented that approximate solutions to differential equations evolving on G of the form: dot-x(t) = F(x(t)), x(0) = p is an element of G. The algorithms depend upon constants c(sub i) and c(sub ij), for i = 1,...,k and j is less than i. The algorithms have the property that if the algorithm starts on the group, then it remains on the group. In addition, they also have the property that if G is the abelian group R(N), then the algorithm becomes the classical Runge-Kutta algorithm. The Cayley algebra generated by labeled, ordered trees is used to generate the equations that the coefficients c(sub i) and c(sub ij) must satisfy in order for the algorithm to yield an rth order numerical integrator and to analyze the resulting algorithms.

Preliminary studies on the evolution of carbon assimilation abilities within Mucorales.

PubMed

Pawłowska, Julia; Aleksandrzak-Piekarczyk, Tamara; Banach, Agnieszka; Kiersztyn, Bartosz; Muszewska, Anna; Serewa, Lidia; Szatraj, Katarzyna; Wrzosek, Marta

2016-05-01

Representatives of Mucorales belong to one of the oldest lineages of terrestrial fungi. Although carbon is of fundamental importance for fungal growth and functioning, relatively little is known about enzymatic capacities of Mucorales. The evolutionary history and the variability of the capacity to metabolize different carbon sources among representatives of the order Mucorales was studied using Phenotypic Microarray Plates. The ability of 26 strains belonging to 23 nonpathogenic species of Mucorales to use 95 different carbon sources was tested. Intraspecies variability of carbon assimilation profiles was lower than interspecies variation for some selected strains. Although similarities between the phylogenetic tree and the dendrogram created from carbon source utilization data were observed, the ability of the various strains to use the analyzed substrates did not show a clear correlation with the evolutionary history of the group. Instead, carbon assimilation profiles are probably shaped by environmental conditions. Copyright © 2016 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

A preliminary cost-effectiveness analysis of hepatitis E vaccination among pregnant women in epidemic regions.

PubMed

Zhao, Yueyuan; Zhang, Xuefeng; Zhu, Fengcai; Jin, Hui; Wang, Bei

2016-08-02

Objective To estimate the cost-effectiveness of hepatitis E vaccination among pregnant women in epidemic regions. Methods A decision tree model was constructed to evaluate the cost-effectiveness of 3 hepatitis E virus vaccination strategies from societal perspectives. The model parameters were estimated on the basis of published studies and experts' experience. Sensitivity analysis was used to evaluate the uncertainties of the model. Results Vaccination was more economically effective on the basis of the incremental cost-effectiveness ratio (ICER< 3 times China's per capital gross domestic product/quality-adjusted life years); moreover, screening and vaccination had higher QALYs and lower costs compared with universal vaccination. No parameters significantly impacted ICER in one-way sensitivity analysis, and probabilistic sensitivity analysis also showed screening and vaccination to be the dominant strategy. Conclusion Screening and vaccination is the most economical strategy for pregnant women in epidemic regions; however, further studies are necessary to confirm the efficacy and safety of the hepatitis E vaccines.

The Inference of Gene Trees with Species Trees

PubMed Central

Szöllősi, Gergely J.; Tannier, Eric; Daubin, Vincent; Boussau, Bastien

2015-01-01

This article reviews the various models that have been used to describe the relationships between gene trees and species trees. Molecular phylogeny has focused mainly on improving models for the reconstruction of gene trees based on sequence alignments. Yet, most phylogeneticists seek to reveal the history of species. Although the histories of genes and species are tightly linked, they are seldom identical, because genes duplicate, are lost or horizontally transferred, and because alleles can coexist in populations for periods that may span several speciation events. Building models describing the relationship between gene and species trees can thus improve the reconstruction of gene trees when a species tree is known, and vice versa. Several approaches have been proposed to solve the problem in one direction or the other, but in general neither gene trees nor species trees are known. Only a few studies have attempted to jointly infer gene trees and species trees. These models account for gene duplication and loss, transfer or incomplete lineage sorting. Some of them consider several types of events together, but none exists currently that considers the full repertoire of processes that generate gene trees along the species tree. Simulations as well as empirical studies on genomic data show that combining gene tree–species tree models with models of sequence evolution improves gene tree reconstruction. In turn, these better gene trees provide a more reliable basis for studying genome evolution or reconstructing ancestral chromosomes and ancestral gene sequences. We predict that gene tree–species tree methods that can deal with genomic data sets will be instrumental to advancing our understanding of genomic evolution. PMID:25070970

Water Stress Impacts Tree-Atmosphere Interaction in the Amazon

NASA Astrophysics Data System (ADS)

van Emmerik, T. H. M.; Steele-Dunne, S. C.; Gentine, P.; Oliveira, R. S.; Van De Giesen, N.

2017-12-01

Land-atmosphere interactions depend on momentum exchange from the atmosphere to the canopy, which depends on the tree drag coefficient. It is known that the drag coefficient, and thus tree-atmosphere interaction, can vary strongly within a canopy. Yet, only few measurements are available to study the variation of tree-atmosphere interaction in time and space, and in response to vegetation water stress. Recent work [1] demonstrated how accelerometers can be used to study tree properties and responses. For this study, accelerometers were used to derive a measure of tree-atmosphere interaction for 19 individual trees of seven different species in the Brazilian Amazon. This study demonstrates that under field conditions, tree-atmosphere interaction can vary considerably in time and space. The five month measurement period included the transitioning from the wet to the dry season. We demonstrate that increased tree water deficit, measured with dendrometers, is related to observed changes in tree-atmosphere interaction, which is hypothesized to be caused by water stress induced changes in tree mass. References [1]. van Emmerik, T.; Steele-Dunne, S.; Hut, R.; Gentine, P.; Guerin, M.; Oliveira, R.S.; Wagner, J.; Selker, J.; van de Giesen, N. Measuring Tree Properties and Responses Using Low-Cost Accelerometers. Sensors 2017, 17, 1098.

3_D modeling using TLS and GPR techniques to characterize above and below-ground wood distribution in pyroclastic deposits along the Blanco River (Chilean Patagonia)

NASA Astrophysics Data System (ADS)

Valdebenito, Galo; Tonon, Alessia; Iroume, Andrés; Alvarado, David; Fuentes, Carlos; Picco, Lorenzo; Lenzi, Mario

2016-04-01

To date, the study of in-stream wood in rivers has been focused mainly on quantifying wood pieces deposited above the ground. However, in some particular river systems, the presence of buried dead wood can also represent an important component of wood recruitment and budgeting dynamics. This is the case of the Blanco River (Southern Chile) severely affected by the eruption of Chaitén Volcano occurred between 2008 and 2009. The high pyroclastic sediment deposition and transport affected the channel and the adjacent forest, burying wood logs and standing trees. The aim of this contribution is to assess the presence and distribution of wood in two study areas (483 m2 and 1989 m2, respectively) located along the lower streambank of the Blanco River, and covered by thick pyroclastic deposition up to 5 m. The study areas were surveyed using two different devices, a Terrestrial Laser Scanner (TLS) and a Ground Penetrating Radar (GPR). The first was used to scan the above surface achieving a high point cloud density (≈ 2000 points m-2) which allowed us to identify and measure the wood volume. The second, was used to characterize the internal morphology of the volcanic deposits and to detect the presence and spatial distribution of buried wood up to a depth of 4 m. Preliminary results have demonstrated differences in the numerousness and volume of above wood between the two study areas. In the first one, there were 43 wood elements, 33 standing trees and 10 logs, with a total volume of 2.96 m3 (109.47 m3 km-1), whereas the second one was characterized by the presence of just 7 standing trees and 11 wood pieces, for a total amount of 0.77 m3 (7.73 m3 km-1). The dimensions of the wood elements vary greatly according to the typology, standing trees show the higher median values in diameter and length (0.15 m and 2.91 m, respectively), whereas the wood logs were smaller (0.06 m and 1.12 m, respectively). The low dimensions of deposited wood can be probably connected to their origin, suggesting that these elements were generated by toppling and breaking of surrounding dead trees. Results obtained with the GPR confirm the ability of this instrument to localize the presence and distribution of buried wood. From the 3-D analysis it was possible to assess the spatial distribution and to estimate, as first approach, the volume of the buried wood which represents approximately 0.04% of the entire volcanic deposit. Further analysis will focus on additional GPR calibration with different wood sizes for a more accurate estimation of the volume. The knowledge of the overall wood amount stored in a fluvial system that can be remobilized over time, represent an essential factor to ensure better forest and river management actions.

Undergraduate Students’ Difficulties in Reading and Constructing Phylogenetic Tree

NASA Astrophysics Data System (ADS)

Sa'adah, S.; Tapilouw, F. S.; Hidayat, T.

2017-02-01

Representation is a very important communication tool to communicate scientific concepts. Biologists produce phylogenetic representation to express their understanding of evolutionary relationships. The phylogenetic tree is visual representation depict a hypothesis about the evolutionary relationship and widely used in the biological sciences. Phylogenetic tree currently growing for many disciplines in biology. Consequently, learning about phylogenetic tree become an important part of biological education and an interesting area for biology education research. However, research showed many students often struggle with interpreting the information that phylogenetic trees depict. The purpose of this study was to investigate undergraduate students’ difficulties in reading and constructing a phylogenetic tree. The method of this study is a descriptive method. In this study, we used questionnaires, interviews, multiple choice and open-ended questions, reflective journals and observations. The findings showed students experiencing difficulties, especially in constructing a phylogenetic tree. The students’ responds indicated that main reasons for difficulties in constructing a phylogenetic tree are difficult to placing taxa in a phylogenetic tree based on the data provided so that the phylogenetic tree constructed does not describe the actual evolutionary relationship (incorrect relatedness). Students also have difficulties in determining the sister group, character synapomorphy, autapomorphy from data provided (character table) and comparing among phylogenetic tree. According to them building the phylogenetic tree is more difficult than reading the phylogenetic tree. Finding this studies provide information to undergraduate instructor and students to overcome learning difficulties of reading and constructing phylogenetic tree.

[A review of the genomic and gene cloning studies in trees].

PubMed

Yin, Tong-Ming

2010-07-01

Supported by the Department of Energy (DOE) of U.S., the first tree genome, black cottonwood (Populus trichocarpa), has been completely sequenced and publicly release. This is the milestone that indicates the beginning of post-genome era for forest trees. Identification and cloning genes underlying important traits are one of the main tasks for the post-genome-era tree genomic studies. Recently, great achievements have been made in cloning genes coordinating important domestication traits in some crops, such as rice, tomato, maize and so on. Molecular breeding has been applied in the practical breeding programs for many crops. By contrast, molecular studies in trees are lagging behind. Trees possess some characteristics that make them as difficult organisms for studying on locating and cloning of genes. With the advances in techniques, given also the fast growth of tree genomic resources, great achievements are desirable in cloning unknown genes from trees, which will facilitate tree improvement programs by means of molecular breeding. In this paper, the author reviewed the progress in tree genomic and gene cloning studies, and prospected the future achievements in order to provide a useful reference for researchers working in this area.

Preliminary Survey on TRY Forest Traits and Growth Index Relations - New Challenges

NASA Astrophysics Data System (ADS)

Lyubenova, Mariyana; Kattge, Jens; van Bodegom, Peter; Chikalanov, Alexandre; Popova, Silvia; Zlateva, Plamena; Peteva, Simona

2016-04-01

Forest ecosystems provide critical ecosystem goods and services, including food, fodder, water, shelter, nutrient cycling, and cultural and recreational value. Forests also store carbon, provide habitat for a wide range of species and help alleviate land degradation and desertification. Thus they have a potentially significant role to play in climate change adaptation planning through maintaining ecosystem services and providing livelihood options. Therefore the study of forest traits is such an important issue not just for individual countries but for the planet as a whole. We need to know what functional relations between forest traits exactly can express TRY data base and haw it will be significant for the global modeling and IPBES. The study of the biodiversity characteristics at all levels and functional links between them is extremely important for the selection of key indicators for assessing biodiversity and ecosystem services for sustainable natural capital control. By comparing the available information in tree data bases: TRY, ITR (International Tree Ring) and SP-PAM the 42 tree species are selected for the traits analyses. The dependence between location characteristics (latitude, longitude, altitude, annual precipitation, annual temperature and soil type) and forest traits (specific leaf area, leaf weight ratio, wood density and growth index) is studied by by multiply regression analyses (RDA) using the statistical software package Canoco 4.5. The Pearson correlation coefficient (measure of linear correlation), Kendal rank correlation coefficient (non parametric measure of statistical dependence) and Spearman correlation coefficient (monotonic function relationship between two variables) are calculated for each pair of variables (indexes) and species. After analysis of above mentioned correlation coefficients the dimensional linear regression models, multidimensional linear and nonlinear regression models and multidimensional neural networks models are built. The strongest dependence between It and WD was obtained. The research will support the work on: Strategic Plan for Biodiversity 2011-2020, modelling and implementation of ecosystem-based approaches to climate change adaptation and disaster risk reduction. Key words: Specific leaf area (SLA), Leaf weight ratio (LWR), Wood density (WD), Growth index (It)

Geospatial Technologies and i-Tree Echo Inventory for Predicting Climate Change on Urban Environment

NASA Astrophysics Data System (ADS)

Sriharan, S.; Robinson, L.; Ghariban, N.; Comar, M.; Pope, B.; Frey, G.

2015-12-01

Urban forests can be useful both in mitigating climate change and in helping cities adapt to higher temperatures and other impacts of climate change. Understanding and managing the impacts of climate change on the urban forest trees and natural communities will help us maintain their environmental, cultural, and economic benefits. Tree Inventory can provide important information on tree species, height, crown width, overall condition, health and maintenance needs. This presentation will demonstrate that a trees database system is necessary for developing a sustainable urban tree program. Virginia State University (VSU) campus benefits from large number and diversity of trees that are helping us by cleaning the air, retaining water, and providing shade on the buildings to reduce energy cost. The objectives of this study were to develop campus inventory of the trees, identify the tree species, map the locations of the trees with user-friendly tools such as i-Tree Eco and geospatial technologies by assessing the cost/benefit of employing student labor for training and ground validation of the results, and help campus landscape managers implement adaptive responses to climate change impacts. Data was collected on the location, species, and size of trees by using i-Tree urban forestry analysis software. This data was transferred to i-Tree inventory system for demonstrating types of trees, diameter of the trees, height of the trees, and vintage of the trees. The study site was mapped by collecting waypoints with GPS (Global Positioning System) at the trees and uploading these waypoints in ArcMap. The results of this study showed that: (i) students make good field crews, (ii) if more trees were placed in the proper area, the heating and cooling costs will reduce, and (iii) trees database system is necessary for planning, designing, planting, and maintenance, and removal of campus trees Research sponsored by the NIFA Grant, "Urban Forestry Management" (2012-38821-20153).

Making the Hubble Space Telescope servicing mission safe

NASA Technical Reports Server (NTRS)

Bahr, N. J.; Depalo, S. V.

1992-01-01

The implementation of the HST system safety program is detailed. Numerous safety analyses are conducted through various phases of design, test, and fabrication, and results are presented to NASA management for discussion during dedicated safety reviews. Attention is given to the system safety assessment and risk analysis methodologies used, i.e., hazard analysis, fault tree analysis, and failure modes and effects analysis, and to how they are coupled with engineering and test analysis for a 'synergistic picture' of the system. Some preliminary safety analysis results, showing the relationship between hazard identification, control or abatement, and finally control verification, are presented as examples of this safety process.

Non-perturbative determination of improvement b-coefficients in Nf = 3

NASA Astrophysics Data System (ADS)

Giulia Maria de Divitiis1, 2**, Maurizio Firrotta1, 2, Jochen Heitger3, Carl Christian Köster3; Anastassios Vladikas2

2018-03-01

We present our preliminary results of the non-perturbative determination of the valence mass dependent coefficients bA - bP and bm as well as the ratio ZPZm=ZA entering the flavour non-singlet PCAC relation in lattice QCD with Nf = 3 dynamical flavours. We apply the method proposed in the past for quenched approximation and Nf = 2 cases, employing a set of finite-volume ALPHA configurations with Schrödinger functional boundary conditions, generated with O(a) improved Wilson fermions and the tree-level Symanzik-improved gauge action for a range of couplings relevant for simulations at lattice spacings of about 0.09 fm and below.

Size matters a lot: tree height and prior growth predict drought-induced tree death in Italian oak forests

NASA Astrophysics Data System (ADS)

Ripullone, F.; Colangelo, M.; Camarero, J. J.; Gazol, A.; Borghetti, M.; Gentilesca, T.

2016-12-01

Climate warming is expected to amplify drought stress resulting in the occurrence of more widespread dieback episodes and increasing mortality rates. This has pushed the search of reliable and robust early-warning indicators of impending drought-triggered tree death. Recent studies highlight how level of defoliation or age of trees strictly coact with drought in leading to forest decline. In addition, tree size and the tree-to-tree competition for water could also contribute to tree death in drought-prone sites. In this regard, it has been predicted that tall trees with isohydric stomatal regulation are most likely to die due to drought stress. Here, we test this hypothesis by analyzing size, age, competition and growth data in a Mediterranean oak species characterized by anisohydric behaviour, showing recent drought-induced mortality in two Italian forest sites. At both study sites, tree height was associated to the probability of dying. However, this association was opposite to published predictions because living trees were taller than dead trees at both sites. Neither age nor competition intensity played significant roles as drivers of tree mortality. Regarding growth data, trends in basal area increment were significantly smaller in dead than in living trees. Differences were most marked at mid (15 years prior to death) than at short (10 years) or long-term (35 year) scales. This is probably not related to intrinsic growth features of the study species but it can be explained because the most severe drought since 1950 occurred in 2000 at the study area, i.e. 15 years prior to the increase of tree mortality and when growth of living and dead trees started diverging. Lastly, we discuss potential factors which may explain why smaller individuals of anisohydric tree species such as Mediterranean oaks are prone to drought-induced tree death.

Finite element based N-Port model for preliminary design of multibody systems

NASA Astrophysics Data System (ADS)

Sanfedino, Francesco; Alazard, Daniel; Pommier-Budinger, Valérie; Falcoz, Alexandre; Boquet, Fabrice

2018-02-01

This article presents and validates a general framework to build a linear dynamic Finite Element-based model of large flexible structures for integrated Control/Structure design. An extension of the Two-Input Two-Output Port (TITOP) approach is here developed. The authors had already proposed such framework for simple beam-like structures: each beam was considered as a TITOP sub-system that could be interconnected to another beam thanks to the ports. The present work studies bodies with multiple attaching points by allowing complex interconnections among several sub-structures in tree-like assembly. The TITOP approach is extended to generate NINOP (N-Input N-Output Port) models. A Matlab toolbox is developed integrating beam and bending plate elements. In particular a NINOP formulation of bending plates is proposed to solve analytic two-dimensional problems. The computation of NINOP models using the outputs of a MSC/Nastran modal analysis is also investigated in order to directly use the results provided by a commercial finite element software. The main advantage of this tool is to provide a model of a multibody system under the form of a block diagram with a minimal number of states. This model is easy to operate for preliminary design and control. An illustrative example highlights the potential of the proposed approach: the synthesis of the dynamical model of a spacecraft with two deployable and flexible solar arrays.

Multivariate analysis of variance of designed chromatographic data. A case study involving fermentation of rooibos tea.

PubMed

Marini, Federico; de Beer, Dalene; Walters, Nico A; de Villiers, André; Joubert, Elizabeth; Walczak, Beata

2017-03-17

An ultimate goal of investigations of rooibos plant material subjected to different stages of fermentation is to identify the chemical changes taking place in the phenolic composition, using an untargeted approach and chromatographic fingerprints. Realization of this goal requires, among others, identification of the main components of the plant material involved in chemical reactions during the fermentation process. Quantitative chromatographic data for the compounds for extracts of green, semi-fermented and fermented rooibos form the basis of preliminary study following a targeted approach. The aim is to estimate whether treatment has a significant effect based on all quantified compounds and to identify the compounds, which contribute significantly to it. Analysis of variance is performed using modern multivariate methods such as ANOVA-Simultaneous Component Analysis, ANOVA - Target Projection and regularized MANOVA. This study is the first one in which all three approaches are compared and evaluated. For the data studied, all tree methods reveal the same significance of the fermentation effect on the extract compositions, but they lead to its different interpretation. Copyright © 2017 Elsevier B.V. All rights reserved.

Evaluating potential impacts of species conversion on transpiration in the Piedmont of North Carolina

NASA Astrophysics Data System (ADS)

Boggs, J.; Treasure, E.; Simpson, G.; Domec, J.; Sun, G.; McNulty, S.

2010-12-01

Land management practices that include species conversion or vegetation manipulation can have consequences to surface water availability, groundwater recharge, streamflow generation, and water quality through altering the transpiration processes in forested watersheds. Our objective in this study is to compare stand water use or transpiration in a piedmont mixed hardwood stand (i.e., present stand) to five hypothetical single species stands (i.e., management scenarios), [Quercus spp. (oak), Acer Rubrum (red maple), Liquidambar styraciflua (sweetgum), Liriodendron tulipifera (tulip poplar), and Pinus Taeda (loblolly pine]. Since October 2007, six watersheds with a flume or v-notch weir installed at the watershed outlet have been monitored for baseline streamflow rates (mm d-1). In the summer of 2010, five trees from each of the above species were instrumented with sap flow sensors in the riparian upland of one watershed to develop linkages between stand stream runoff and transpiration. The sap flow or thermal heat dissipation method was used to calculate tree sap flux density for the mixed hardwood stand. Tree sapwood area and stand tree density were then used to compute stand transpiration rates, mm d-1, from June - August 2010. The parameters of the hypothetical single species stands were based on values determined from mixed hardwood stand conditions (e.g., the same stand sapwood area and stand tree density were applied to each option). The diameter at beast height of the monitored trees ranged from 10 cm to 38 cm with a water use range of 1.8 kg d-1 to 104 kg d-1. From our preliminary data, we found daily transpiration from the mixed hardwood stand (2.8 mm d-1 ± 0.06) was significantly (p < 0.05) lower than daily transpiration from the red maple (3.7 mm d-1 ± 0.14) and tulip poplar (3.5 mm d-1 ± 0.12) single species stand management option and significantly (p < 0.05) higher than the loblolly pine (2.3 mm d-1 ± 0.08), sweetgum (2.1 mm d-1 ± 0.08) and oak spp. (1.4 mm d-1 ± 0.04) option. Given that our data represent growing season conditions, these daily transpiration differences are likely a result of physical and physiological differences related to species canopy properties or root distribution and functions. Daily streamflow rates could be reduced by as much as 40% in the red maple scenario because of the increase in daily transpiration. This reduction in flow could have long-term implications and risk to water quality conditions and aquatic species habitat. We will continue to monitor transpiration rates in this mixed hardwood stand to quantify the seasonal variability in water use.

Regolith properties under trees and the biomechanical effects caused by tree root systems as recognized by electrical resistivity tomography (ERT)

NASA Astrophysics Data System (ADS)

Pawlik, Łukasz; Kasprzak, Marek

2018-01-01

Following previous findings regarding the influence of vascular plants (mainly trees) on weathering, soil production and hillslope stability, in this study, we attempted to test a hypothesis regarding significant impacts of tree root systems on soil and regolith properties. Different types of impacts from tree root system (direct and indirect) are commonly gathered under the key term of "biomechanical effects". To add to the discussion of the biomechanical effects of trees, we used a non-invasive geophysical method, electrical resistivity tomography (ERT), to investigate the profiles of four different configurations at three study sites within the Polish section of the Outer Western Carpathians. At each site, one long profile (up to 189 m) of a large section of a hillslope and three short profiles (up to 19.5 m), that is, microsites occupied by trees or their remnants, were made. Short profiles included the tree root zone of a healthy large tree, the tree stump of a decaying tree and the pit-and-mound topography formed after a tree uprooting. The resistivity of regolith and bedrock presented on the long profiles and in comparison with the short profiles through the microsites it can be seen how tree roots impact soil and regolith properties and add to the complexity of the whole soil/regolith profile. Trees change soil and regolith properties directly through root channels and moisture migration and indirectly through the uprooting of trees and the formation of pit-and-mound topography. Within tree stump microsites, the impact of tree root systems, evaluated by a resistivity model, was smaller compared to microsites with living trees or those with pit-and-mound topography but was still visible even several decades after the trees were windbroken or cut down. The ERT method is highly useful for quick evaluation of the impact of tree root systems on soils and regolith. This method, in contrast to traditional soil analyses, offers a continuous dataset for the entire microsite and at depths not normally reached by standard soil excavations. The non-invasive nature of ERT studies is especially important for protected areas as it was shown in the present study.

Stain Associated with Nails in Trees on Permanent Plots

Treesearch

Charles B. Briscoe; Benton H. Box

1959-01-01

In studies involving the measurement and subsequent remeasurement of trees, such as CFI plots or siliviculture research plots, the trees are commonly identified by metal tags fastened to the trees by means of nails. In 1957 a study was begun to determine whether this practice would lead to dregrade or scalable defect in the trees.

Rainfall interception, and its modeling, in Pine and Eucalypt stands in Portugal

NASA Astrophysics Data System (ADS)

de Coninck, H. L.; Keizer, J. J.; Coelho, C. O. A.; van Dijck, S. J. E.; Jetten, V. G.; Warmerdam, P. M. M.; Ferreira, A. J. D.; Boulet, A. K.

2003-04-01

Within the framework of the EU-funded CLIMED project (ICA3-2000-30005), concerning the water management implications of foreseeable climate and land-use changes in central Portugal and northern Africa, the event-based Limburg Soil Erosion Model (LISEM; www.geog.uu.nl/lisem) is intended to provide further insight into water yields, peak flow and timing under possible future rainfall regimes. In the Portuguese study area, LISEM is being applied to two small (< 1km2) catchments with contrasting land covers, dominated by Pinus pinaster Ait. and Eucalyptus globulus Labill. tree stands, respectively. In LISEM, cumulative interception is modelled using the empirical formula by Ashton (1979), i.e. as a function of vegetation cover and canopy storage capacity, which in turn is estimated from the Leaf Area Index using the Von Hoyningen-Huenes (1981) formula. Besides that the appropriateness of the LISEM interception module for forested areas may be questioned, its (optional) substitution in LISEM by a more process-based model like that of Rutter would be more in line with LISEM’s overall model structure. This study has as main aims to assess the suitability of (1) the Ashton formula and (2) the sparse variants of the Gash and Rutter interception models to model rainfall interception measurements carried out in a Pinus pinaster Ait. stand as well as a Eucalyptus globulus Labill. stand. Unlike in the bulk of published studies on forest interception, the experimental set-up structures the sampling space in below-canopy and gaps. The below-canopy sampling space is further divided into two classes on the basis of dendrometric data from a prior inventory of 20x20 m. The two stands are equipped with 15 below-canopy and 5 gap rainfall collectors, 3 of which are automated tipping-buckets gauges. Stemflow is measured for 10 trees per stand, which includes 2 trees with automated tipping-bucket (0.5 l/tip). Between November 2002 and the present time, 31 rainfall events totaling about 850 mm were recorded. Interestingly, these preliminary results reveal that below-canopy rainfall may exceed gap rainfall. This phenomenon can be explained by non-vertical rainfall, increasing the probability of droplets hitting the tree canopy instead of the forest floor. If further measurements confirm it to occur regularly, the suitability of not only the LISEM interception module but also the sparse Rutter and Gash models will, at least conceptually, be in doubt.

Assessing and Improving Student Understanding of Tree-Thinking

NASA Astrophysics Data System (ADS)

Kummer, Tyler A.

Evolution is the unifying theory of biology. The importance of understanding evolution by those who study the origins, diversification and diversity life cannot be overstated. Because of its importance, in addition to a scientific study of evolution, many researchers have spent time studying the acceptance and the teaching of evolution. Phylogenetic Systematics is the field of study developed to understand the evolutionary history of organisms, traits, and genes. Tree-thinking is the term by which we identify concepts related to the evolutionary history of organisms. It is vital that those who undertake a study of biology be able to understand and interpret what information these phylogenies are meant to convey. In this project, we evaluated the current impact a traditional study of biology has on the misconceptions students hold by assessing tree-thinking in freshman biology students to those nearing the end of their studies. We found that the impact of studying biology was varied with some misconceptions changing significantly while others persisted. Despite the importance of tree-thinking no appropriately developed concept inventory exists to measure student understanding of these important concepts. We developed a concept inventory capable of filling this important need and provide evidence to support its use among undergraduate students. Finally, we developed and modified activities as well as courses based on best practices to improve teaching and learning of tree-thinking and organismal diversity. We accomplished this by focusing on two key questions. First, how do we best introduce students to tree-thinking and second does tree-thinking as a course theme enhance student understanding of not only tree-thinking but also organismal diversity. We found important evidence suggesting that introducing students to tree-thinking via building evolutionary trees was less successful than introducing the concept via tree interpretation and may have in fact introduced or strengthened a misconception. We also found evidence that infusing tree-thinking into an organismal diversity course not only enhances student understanding of tree-thinking but also helps them better learn organismal diversity.

Polynomial-Time Algorithms for Building a Consensus MUL-Tree

PubMed Central

Cui, Yun; Jansson, Jesper

2012-01-01

Abstract A multi-labeled phylogenetic tree, or MUL-tree, is a generalization of a phylogenetic tree that allows each leaf label to be used many times. MUL-trees have applications in biogeography, the study of host–parasite cospeciation, gene evolution studies, and computer science. Here, we consider the problem of inferring a consensus MUL-tree that summarizes a given set of conflicting MUL-trees, and present the first polynomial-time algorithms for solving it. In particular, we give a straightforward, fast algorithm for building a strict consensus MUL-tree for any input set of MUL-trees with identical leaf label multisets, as well as a polynomial-time algorithm for building a majority rule consensus MUL-tree for the special case where every leaf label occurs at most twice. We also show that, although it is NP-hard to find a majority rule consensus MUL-tree in general, the variant that we call the singular majority rule consensus MUL-tree can be constructed efficiently whenever it exists. PMID:22963134

Polynomial-time algorithms for building a consensus MUL-tree.

PubMed

Cui, Yun; Jansson, Jesper; Sung, Wing-Kin

2012-09-01

A multi-labeled phylogenetic tree, or MUL-tree, is a generalization of a phylogenetic tree that allows each leaf label to be used many times. MUL-trees have applications in biogeography, the study of host-parasite cospeciation, gene evolution studies, and computer science. Here, we consider the problem of inferring a consensus MUL-tree that summarizes a given set of conflicting MUL-trees, and present the first polynomial-time algorithms for solving it. In particular, we give a straightforward, fast algorithm for building a strict consensus MUL-tree for any input set of MUL-trees with identical leaf label multisets, as well as a polynomial-time algorithm for building a majority rule consensus MUL-tree for the special case where every leaf label occurs at most twice. We also show that, although it is NP-hard to find a majority rule consensus MUL-tree in general, the variant that we call the singular majority rule consensus MUL-tree can be constructed efficiently whenever it exists.

Nonlinear behaviors of FRP-wrapped tall trees subjected to high wind loads

NASA Astrophysics Data System (ADS)

Kang, J.; Yi, Z. Z.; Choi, S. G.

2017-12-01

This study investigated the mechanical stability of historical tall trees wrapped with fiber-reinforced polymer (FRP) laminates using finite element (FE) analysis. High wind loads are considered as external loading conditions as they are one of the major threats on the structural stability of tall old trees. There have been several traditional practices to enhance the stability of tall trees exposed to high windstorms such as tree supporters and anchorages. They, however, have been sometimes causing negative effects with their misuses as the application guidelines for those methods were not adequately studied or documented. Furthermore, the oldest known trees in the country should be protected from the damage of external surface as well as ruin of the landscape. The objective of this study was to evaluate the structural effects of FRP wraps applied to tall trees subjected to high wind loads. The anisotropic material properties of wood and FRP laminates were considered in the analysis in addition to geometrically nonlinear behaviors. This study revealed that FRP wrapping for tall trees could effectively reduce the deflections and maximum stresses of trees, which results in the enhanced stability of tall trees. The optimum geometry and thicknesses of FRP wraps proposed in this study would provide fundemental guidelines for designing and constructing the application of innovative FRP wraps on tall trees, which are structurally unstable or should be preserved nationally and historically.

Cavity tree selection by red-cockaded woodpeckers in relation to tree age

Treesearch

D. Craig Rudolph; Richard N. Conner

1991-01-01

We aged over 1350 Red-cockaded Woodpecker (Picoides borealis) cavity trees and a comparable number of randomly selected trees. Resulting data strongly support the hypothesis that Red-cockaded Woodpeckers preferentially select older trees. Ages of recently initiated cavity trees in the Texas study areas generally were similar to those of cavity trees...

Mites associated with sugarcane crop and with native trees from adjacent Atlantic forest fragment in Brazil.

PubMed

Duarte, Mércia E; Navia, Denise; dos Santos, Lucas R; Rideiqui, Pedro J S; Silva, Edmilson S

2015-08-01

In some Brazilian regions the Atlantic forest biome is currently restrict to fragments occurring amid monocultures, as sugarcane crops in the Northeast region. Important influence of forest remnants over mite fauna of permanent crops have been showed, however it has been poorly explored on annual crops. The first step for understanding ecological relationship in an agricultural systems is known its composition. The objective of this study was to investigate the plant-inhabiting mite fauna associated with sugarcane crop (Saccharum officinarum L.) (Poaceae) and caboatã (Cupania oblongifolia Mart.) (Sapindaceae) trees in the state of Alagoas, Brazil. Sugarcane stalks and sugarcane and caboatã apical, middle and basal leaves were sampled. A total of 2565 mites were collected from sugarcane and classified into seven families of Trombidiformes and Mesostigmata orders, with most individuals belonging to the Eriophyidae, Tetranychidae and Tarsonemidae families. Among predatory mites, the Phytoseiidae were the most common. A total of 1878 mites were found on C. oblongifolia and classified into 13 families of Trombidiformes and Mesostigmata orders. The most abundant phytophagous mite family on caboatã was also Eriophyidae. In contrast to sugarcane, Ascidae was the most common predatory mite family observed in caboatã. No phytophagous species were common to both sugarcane and C. oblongifolia. However two predatory mites were shared between host plants. Although mites associated with only one native species in the forest fragment were evaluated in this study, our preliminary results suggest Atlantic forest native vegetation can present an important role in the sugarcane agricultural system as a source of natural enemies.

Strawberry-Tree Honey Induces Growth Inhibition of Human Colon Cancer Cells and Increases ROS Generation: A Comparison with Manuka Honey

PubMed Central

Afrin, Sadia; Forbes-Hernandez, Tamara Y.; Gasparrini, Massimiliano; Bompadre, Stefano; Quiles, José L.; Sanna, Gavino; Spano, Nadia; Giampieri, Francesca; Battino, Maurizio

2017-01-01

Honey is a natural product known to modulate several biological activities including cancer. The aim of the present study was to examine the phytochemical content and the antioxidant activity of Strawberry tree (Arbutus unedo) honey (STH) and its cytotoxic properties against human colon adenocarcinoma (HCT-116) and metastatic (LoVo) cell lines in comparison with Manuka (Leptospermum scoparium) honey (MH). Several unifloral STH and MH were analyzed for their phenolic, flavonoid, amino acid and protein contents, as well as their radical scavenging activities. STH from the Berchidda area showed the highest amount of phenolic, flavonoid, amino acid and protein content, and antioxidant capacity compared to MH. Both STH and MH induced cytotoxicity and cell death in a dose- and time-dependent manner in HCT-116 and LoVo cells, with less toxicity on non-cancer cells. Compared to MH, STH showed more effect at lower concentrations on HCT-116 and LoVo cells. In addition, both honeys increased intracellular reactive oxygen species (ROS) generation. In HCT-116 cells, STH and MH induced similar ROS production but in LoVo cells STH induced a higher percentage of ROS compared to MH. Our results indicate that STH and MH can induce cell growth inhibition and ROS generation in colon adenocarcinoma and metastatic cells, which could be due to the presence of phytochemicals with antioxidant properties. These preliminary results are interesting and suggest a potential chemopreventive action which could be useful for further studies in order to develop chemopreventive agents for colon cancer. PMID:28287469

Mastication and prescribed fire influences on tree mortality and predicted fire behavior in ponderosa pine

Treesearch

Alicia L. Reiner; Nicole M. Vaillant; Scott N. Dailey

2012-01-01

The purpose of this study was to provide land managers with information on potential wildfire behavior and tree mortality associated with mastication and masticated/fire treatments in a plantation. Additionally, the effect of pulling fuels away from tree boles before applying fire treatment was studied in relation to tree mortality. Fuel characteristics and tree...

Controls on stand transpiration and soil water utilization along a tree density gradient in a Neotropical savanna

Treesearch

Sandra J. Bucci; Fabian G. Scholz; Guillermo Goldstein; William A. Hoffmann; Frederick C. Meinzer; Augusto C. Franco; Thomas Giambelluca; Fernando Miralles-Wilhelm

2008-01-01

Environmental controls of stand-level tree transpiration (E) and seasonal patterns of soil water utilization were studied in five central Brazilian savanna (Cerrado) sites differing in tree density. Tree density of Cerrado vegetation in the study area consistently changes along topographic gradients from ~1,000 trees ha-1 in open savannas (campo...

Preliminary Reconnaissance of West Astringent Creek Thermal Area, Yellowstone National Park

NASA Astrophysics Data System (ADS)

Fairley, J. P., Jr.; Villegas, G.; Aunan, M. M.; Lindsey, C.; Sorensen, A.; Larson, P. B.

2016-12-01

The West Astringent Creek Thermal Area (WACTA) is one of the newest thermal areas in Yellowstone National Park (YNP). Thermal activity in the headwaters region of Astringent Creek, on the southeast edge of Sour Creek Dome, was rst noted in 1985; subsequent developments included the appearance of a high-temperature (104C) hydrothermal fumarole (which later metamorphosed into a mud volcano) and an area of tree-kill due to rising ground temperatures [Hutchinson, 1996]. We conducted a preliminary exploration of the hydrothermal area through visual evaluation of the spatial extent, location of the features, and nature of the hydrothermal area. 16 features were chosen based upon the following criteria: 1) initial appearance, 2) location in the thermal area, 3) location with respect to each other, and 4) accessibility. From these features we collected in-situ temperature and pH, as well as aqueous samples for geochemical analysis of cations, and deuterium and oxygen isotopes. With the information collected we will make a brief description of the thermal area and present a basis to conduct future research to obtain an amplified characterization of the WACTA.

Thermal behavior of an asphalt pavement in the laboratory and in the parking lot.

PubMed

Martinkauppi, J B; Mäkiranta, A; Kiijärvi, J; Hiltunen, E

2015-01-01

The urban, constructed areas are full of buildings and different kinds of pavements and have a noticeable lack of trees and flora. These areas are accumulating the heat from the Sun, people, vehicles, and constructions. One interesting heat collector is the asphalt pavement. How does the heat transfer to different layers under the pavement or does it? What are the temperatures under the pavement in Finland where the winter can be pretty hard? How can those temperatures be measured accurately? These are the main questions this paper gives the preliminary answers to. First the thermal behavior of asphalt and the layers beneath are researched in the laboratory and then the measurement field is bored and dug in the parking in the Western coast of Finland, 63°5'45'' N. Distributed temperature sensing method was found to be a good choice for temperature measurements. Thermal behavior of pavement has been monitored in different layers and the preliminary results have been published here. The goal of this research is to assess the applicability of asphalt pavements for heat energy collection.

Thermal Behavior of an Asphalt Pavement in the Laboratory and in the Parking Lot

PubMed Central

Martinkauppi, J. B.; Mäkiranta, A.; Kiijärvi, J.; Hiltunen, E.

2015-01-01

The urban, constructed areas are full of buildings and different kinds of pavements and have a noticeable lack of trees and flora. These areas are accumulating the heat from the Sun, people, vehicles, and constructions. One interesting heat collector is the asphalt pavement. How does the heat transfer to different layers under the pavement or does it? What are the temperatures under the pavement in Finland where the winter can be pretty hard? How can those temperatures be measured accurately? These are the main questions this paper gives the preliminary answers to. First the thermal behavior of asphalt and the layers beneath are researched in the laboratory and then the measurement field is bored and dug in the parking in the Western coast of Finland, 63°5′45′′ N. Distributed temperature sensing method was found to be a good choice for temperature measurements. Thermal behavior of pavement has been monitored in different layers and the preliminary results have been published here. The goal of this research is to assess the applicability of asphalt pavements for heat energy collection. PMID:25861679

Inversion analysis of estimating interannual variability and its uncertainties in biotic and abiotic parameters of a parsimonious physiologically based model after wind disturbance

NASA Astrophysics Data System (ADS)

Toda, M.; Yokozawa, M.; Richardson, A. D.; Kohyama, T.

2011-12-01

The effects of wind disturbance on interannual variability in ecosystem CO2 exchange have been assessed in two forests in northern Japan, i.e., a young, even-aged, monocultured, deciduous forest and an uneven-aged mixed forest of evergreen and deciduous trees, including some over 200 years old using eddy covariance (EC) measurements during 2004-2008. The EC measurements have indicated that photosynthetic recovery of trees after a huge typhoon occurred during early September in 2004 activated annual carbon uptake of both forests due to changes in physiological response of tree leaves during their growth stages. However, little have been resolved about what biotic and abiotic factors regulated interannual variability in heat, water and carbon exchange between an atmosphere and forests. In recent years, an inverse modeling analysis has been utilized as a powerful tool to estimate biotic and abiotic parameters that might affect heat, water and CO2 exchange between the atmosphere and forest of a parsimonious physiologically based model. We conducted the Bayesian inverse model analysis for the model with the EC measurements. The preliminary result showed that the above model-derived NEE values were consistent with observed ones on the hourly basis with optimized parameters by Baysian inversion. In the presentation, we would examine interannual variability in biotic and abiotic parameters related to heat, water and carbon exchange between the atmosphere and forests after disturbance by typhoon.

Tree-ring records of near-Younger Dryas time in central North America - Preliminary results from the Lincoln quarry site, central Illinois, USA

USGS Publications Warehouse

Panyushkina, Irina P.; Leavitt, Steven W.; Wiedenhoeft, A.; Noggle, S.; Curry, B.; Grimm, E.

2004-01-01

The abrupt millennial-scale changes associated with the Younger Dryas (YD) event ("chronozone") near the dawn of the Holocene are at least hemispheric, if not global, in extent. Evidence for the YD cold excursion is abundant in Europe but fairly meager in central North America. We are engaged in an investigation of high-resolution environmental changes in mid-North America over several millennia (about 10,000 to 14,000 BP) during the Late Glacial-Early Holocene transition, including the YD interval. Several sites containing logs or stumps have been identified and we are in the process of initial sampling or re-sampling them for this project. Here, we report on a site in central Illinois containing a deposit of logs initially thought to be of YD age preserved in alluvial sands. The assemblage of wood represents hardwood (angiosperm) trees, and the ring-width characteristics are favorable to developing formal tree-ring chronologies. However, 4 new radiocarbon dates indicate deposition of wood may have taken place over at least 8000 14C yr (6000-14,000 BP). This complicates the effort to develop a single floating chronology of several hundred years at this site, but it may provide wood from a restricted region over a long period of time from which to develop a sequence of floating chronologies, the timing of deposition and preservation of which could be related to paleoclimatic events and conditions.

Application of point-process statistical tools to stable isotopes in xylem water for the study of inter- and intra-specific interactions in water uptake patterns in a mixed stand of Pinus halepensis Mill. and Quercus ilex L.

NASA Astrophysics Data System (ADS)

Comas, Carles; del Castillo, Jorge; Voltas, Jordi; Ferrio, Juan Pedro

2013-04-01

The stable isotope composition of xylem water reflects has been used to assess inter-specific differences in uptake patterns, revealing synergistic and competition processes in the use of water resources (see e.g. Dawson et al. 1993). However, there is a lack of detailed studies on spatial and temporal variability of inter- and intra-specific competition within forest stands. In this context, the aim of this work was to compare the isotope composition of xylem water (δ18O , δ2H) in two common Mediterranean tree species, Quercus ilex L. and Pinus halepensis Mill, in order to understand their water uptake patterns throughout the growing season. In addition, we analyze the spatial variability of xylem water, to get insight into inter-specific strategies employed to cope with drought and the interaction between the individuals. Our first hypothesis was that both species used different strategies to cope with drought by uptaking water at different depths; and our second hypothesis was that individual trees would behave in different manner according to the distance to their neighbours as well as to whether the neighbour is from one species or the other. The study was performed in a mixed stand where both species are nearly co-dominant, adding up to a total of 33 oaks and 77 pines (plot area= 893 m2). We sampled sun-exposed branches of each tree six times over the growing season, and extracted the xylem water with a cryogenic trap. The isotopic composition of the water was determined using a Picarro Water Analizer L2130-i. Tree mapping for spatial analysis was done using a high resolution GPS technology (Trimble GeoExplorer 6000). For the spatial analysis, we used the pair-correlation function to study intra-specific tree configuration and the bivariate pair correlation function to analyse the inter-specific spatial configurations (Stoyan et al 1995). Moreover, the isotopic composition of xylem water was assumed to be a mark associated to each tree and analysed as a marked point pattern. Preliminary results showed significant differences between species, but only during drought periods, confirming our first hypothesis. For example, in late-summer and early-autumn, the values for Q. Ilex (δ18O= -4.9 ±0.3 permille, δ2H=-53.5±1.2 permille) were significantly lower than for P. halepensis (δ18O= -1.1±0.2 permille, δ2H = -27.8±0.8 permille), pointing to the use of deeper soil layers by Q. ilex. On the other hand, point process analyses showed intra-specific interactions, whereas inter-specific interactions were not detected. Acknowledgements: This work was funded by MC-ERG-246725 (FP7, EU) and AGL 2012-40039-C02-02 (MINECO, Spain). JdC and JPF are supported by FPI fellowship (MCINN) and Ramón y Cajal programme (RYC-2008-02050, MINECO), respectively. References Dawson TE et al. 1993. In: Ehleringer JR, Hall AE, Farquhar GD (eds) Stable isotopes and plant carbon-water relations. Academic Press, Inc. IPCC. 2007 Climate Change 2007: The Physical Science Basis. Cambridge UP. Stoyan D et al. 1995. Stochastic Geometry and its Applications. Wiley&Sons.

Plants as bio-indicators of subsurface conditions: impact of groundwater level on BTEX concentrations in trees.

PubMed

Wilson, Jordan; Bartz, Rachel; Limmer, Matt; Burken, Joel

2013-01-01

Numerous studies have demonstrated trees' ability to extract and translocate moderately hydrophobic contaminants, and sampling trees for compounds such as BTEX can help delineate plumes in the field. However, when BTEX is detected in the groundwater, detection in nearby trees is not as reliable an indicator of subsurface contamination as other compounds such as chlorinated solvents. Aerobic rhizospheric and bulk soil degradation is a potential explanation for the observed variability of BTEX in trees as compared to groundwater concentrations. The goal of this study was to determine the effect of groundwater level on BTEX concentrations in tree tissue. The central hypothesis was increased vadose zone thickness promotes biodegradation of BTEX leading to lower BTEX concentrations in overlying trees. Storage methods for tree core samples were also investigated as a possible reason for tree cores revealing lower than expected BTEX levels in some sampling efforts. The water level hypothesis was supported in a greenhouse study, where water table level was found to significantly affect tree BTEX concentrations, indicating that the influx of oxygen coupled with the presence of the tree facilitates aerobic biodegradation of BTEX in the vadose zone.

A method to trace root-respired CO2 using a 13C label

NASA Astrophysics Data System (ADS)

Cooperdock, S.; Breecker, D.; Litvak, M. E.

2014-12-01

In order to partition total soil respiration into root respiration and decomposition under ambient conditions in desert soils, the following method was developed using 13C-labeled CO2 in a modern juniper savannah in central New Mexico. The labeled CO2 was mixed with ambient air and pumped into a small (2.5 m diameter and 1.4 m tall) juniper tree canopy . 10 L of the 13CO2 was sufficient to generate a stream of air at 20 L/min for 1 hour with a CO2 concentration of 540 ppm and a δ13C value of approximately 35,000‰. Plastic tarpaulins were used as a wind block. The 13CO2 -labeled air was applied to the canopy during peak photosynthesis between 10 and 11 am on June 30 2014 during which canopy air CO2 was elevated by approximately 10 ppm over ambient and had δ13C values ranging from 50 to 1000 ‰. Over the next three days, gas and tissue samples were collected in order to trace the 13C label through the juniper tree. Leaf and root samples collected from the labeled tree and from several control trees were loaded into exetainer vials, flushed with CO2-free air and incubated in the dark for 5 hours in order to measure the carbon isotope composition of respired CO2. Samples of soil pore space gas were collected from wells under the labeled tree and a control tree and were transported to the laboratory in He-flushed exetainer vials. The δ13C values of CO2 in the soil gas samples and in the headspace of incubation vials were measured using an isotope ratio mass spectrometer. The δ13C values of foliar respiration were significantly higher than those of the control (by 3.6‰, p < 0.01) one and two days after labeling and δ13C values of root-respired CO2 were significantly higher (by 0.7‰, p = 0.01) than those of the control three days after labeling. In addition, δ13C values of soil respired CO2, determined from measurements of soil pore space CO2 at 50 cm three days after labeling, were significantly higher (by 0.7‰, p < 0.03)) for the labeled tree than control. The difference between δ13C values of soil respired CO2 under the labeled and control trees was not large enough to partition soil respiration into its component fluxes. However, these preliminary data show the potential for this method with longer labeling times to quantify the contribution of root respiration in soils, which has implications on models for soil CO2 in present day ecosystems and the geologic record.

A Black Swan and Sub-continental Scale Dynamics in Humid, Late-Holocene Broadleaf Forests

NASA Astrophysics Data System (ADS)

Pederson, N.; Dyer, J.; McEwan, R.; Hessl, A. E.; Mock, C. J.; Orwig, D.; Rieder, H. E.; Cook, B. I.

2012-12-01

In humid regions with dense broadleaf-dominated forests where gap-dynamics is the prevailing disturbance regime, paleoecological evidence shows regional-scale changes in forest composition associated with climatic change. To investigate the potential for regional events in late-Holocene forests, we use tree-ring data from 76 populations covering 840,000 km2 and 5.3k tree recruitment dates spanning 1.4 million km2 in the eastern US to investigate the occurrence of simultaneous forest dynamics across a humid region. We compare regional forest dynamics with an independent set of annually-resolved tree ring record of hydroclimate to examine whether climate dynamics might drive forest dynamics in this humid region. In forests where light availability is an important limitation for tree recruitment, we document a pulse of tree recruitment during the mid- to late-1600s across the eastern US. This pulse, which can be inferred as large-scale canopy opening, occurred during an era that multiple proxies indicate as extended drought between two intense pluvial. Principal component analysis of the 76 populations indicates a step-change increase in average ring width during the late-1770s resembling a potential canopy accession event over 42,800 km2 of the southeastern US. Growth-release analysis of populations loading strongly on this eigenvector indicates severe canopy disturbance from 1775-1779 that peaked in 1776. The 1776 event follows a period with extended droughts and severe large-scale frost event. We hypothesize these climatic events lead to elevated tree mortality in the late-1770s and canopy accession for understory trees. Superposed epoch analysis reveals that spikes of elevated canopy disturbance from 1685-1850 CE are significantly associated with drought. Extreme value theory statistics indicates the 1776 event lies beyond the 99.9 quantile and nearly 7 sigmas above the 1685-1850 mean rate of disturbance. The time-series of canopy disturbance from 1685-1850 is so poorly described by a Gaussian distribution that it can be considered 'heavy tailed'. Preliminary results show that disturbance events that affect >3-5% of the trees in our dataset occur approximately every 200 years. The most extreme rates (>5%) occur approximately every 500-1000 years. These statistics indicate that the 1775-1779 heavy-tail event can also be considered a 'Black Swan', the rare event that has the potential to alter a system's trajectory further than common events. Our results challenge traditional views regarding characteristic disturbance regime in humid temperate forests, and speak to the importance of punctuated climatic events in shaping forest structure for centuries. Such an understanding is critical given the potential of more frequent extreme climatic events in the future.

Predicting Rotator Cuff Tears Using Data Mining and Bayesian Likelihood Ratios

PubMed Central

Lu, Hsueh-Yi; Huang, Chen-Yuan; Su, Chwen-Tzeng; Lin, Chen-Chiang

2014-01-01

Objectives Rotator cuff tear is a common cause of shoulder diseases. Correct diagnosis of rotator cuff tears can save patients from further invasive, costly and painful tests. This study used predictive data mining and Bayesian theory to improve the accuracy of diagnosing rotator cuff tears by clinical examination alone. Methods In this retrospective study, 169 patients who had a preliminary diagnosis of rotator cuff tear on the basis of clinical evaluation followed by confirmatory MRI between 2007 and 2011 were identified. MRI was used as a reference standard to classify rotator cuff tears. The predictor variable was the clinical assessment results, which consisted of 16 attributes. This study employed 2 data mining methods (ANN and the decision tree) and a statistical method (logistic regression) to classify the rotator cuff diagnosis into “tear” and “no tear” groups. Likelihood ratio and Bayesian theory were applied to estimate the probability of rotator cuff tears based on the results of the prediction models. Results Our proposed data mining procedures outperformed the classic statistical method. The correction rate, sensitivity, specificity and area under the ROC curve of predicting a rotator cuff tear were statistical better in the ANN and decision tree models compared to logistic regression. Based on likelihood ratios derived from our prediction models, Fagan's nomogram could be constructed to assess the probability of a patient who has a rotator cuff tear using a pretest probability and a prediction result (tear or no tear). Conclusions Our predictive data mining models, combined with likelihood ratios and Bayesian theory, appear to be good tools to classify rotator cuff tears as well as determine the probability of the presence of the disease to enhance diagnostic decision making for rotator cuff tears. PMID:24733553

Recon Study Hurricane Agnes.

DTIC Science & Technology

1972-10-01

planting of new trees , evaluations be made to determine what species of tree best will withstand the conditions of that area Such trees as the willow...beyond 2 years) effects. The following factors were surveyed "by this study : geological characteristics, soil erosion & sedimentation, tree damage...Erosion and Sedimentations Tree Damage 14 Wildlife and Related Habitat 17 Fishlife and Related Habitat 22 Water Quality 27 Recreation Impact 32

Tree voles: an evaluation of their distribution and habitat relationships based on recent and historical studies, habitat models, and vegetation change

Treesearch

Eric D. Forsman; James K. Swingle; Raymond J. Davis; Brian L. Biswell; Lawrence S. Andrews

2016-01-01

We describe the historical and current distribution of tree voles (Arborimus longicaudus; A. pomo) and compare the minimum density of trees with tree vole nests in different forest age-classes based on museum records, field notes of previous collectors, tree vole nest surveys conducted by federal agencies, and our field studies in Oregon and...

TreeNetViz: revealing patterns of networks over tree structures.

PubMed

Gou, Liang; Zhang, Xiaolong Luke

2011-12-01

Network data often contain important attributes from various dimensions such as social affiliations and areas of expertise in a social network. If such attributes exhibit a tree structure, visualizing a compound graph consisting of tree and network structures becomes complicated. How to visually reveal patterns of a network over a tree has not been fully studied. In this paper, we propose a compound graph model, TreeNet, to support visualization and analysis of a network at multiple levels of aggregation over a tree. We also present a visualization design, TreeNetViz, to offer the multiscale and cross-scale exploration and interaction of a TreeNet graph. TreeNetViz uses a Radial, Space-Filling (RSF) visualization to represent the tree structure, a circle layout with novel optimization to show aggregated networks derived from TreeNet, and an edge bundling technique to reduce visual complexity. Our circular layout algorithm reduces both total edge-crossings and edge length and also considers hierarchical structure constraints and edge weight in a TreeNet graph. These experiments illustrate that the algorithm can reduce visual cluttering in TreeNet graphs. Our case study also shows that TreeNetViz has the potential to support the analysis of a compound graph by revealing multiscale and cross-scale network patterns. © 2011 IEEE

Tree detection in orchards from VHR satellite images using scale-space theory

NASA Astrophysics Data System (ADS)

Mahour, Milad; Tolpekin, Valentyn; Stein, Alfred

2016-10-01

This study focused on extracting reliable and detailed information from very High Resolution (VHR) satellite images for the detection of individual trees in orchards. The images contain detailed information on spectral and geometrical properties of trees. Their scale level, however, is insufficient for spectral properties of individual trees, because adjacent tree canopies interlock. We modeled trees using a bell shaped spectral profile. Identifying the brightest peak was challenging due to sun illumination effects caused 1 by differences in positions of the sun and the satellite sensor. Crown boundary detection was solved by using the NDVI from the same image. We used Gaussian scale-space methods that search for extrema in the scale-space domain. The procedures were tested on two orchards with different tree types, tree sizes and tree observation patterns in Iran. Validation was done using reference data derived from an UltraCam digital aerial photo. Local extrema of the determinant of the Hessian corresponded well to the geographical coordinates and the size of individual trees. False detections arising from a slight asymmetry of trees were distinguished from multiple detections of the same tree with different extents. Uncertainty assessment was carried out on the presence and spatial extents of individual trees. The study demonstrated how the suggested approach can be used for image segmentation for orchards with different types of trees. We concluded that Gaussian scale-space theory can be applied to extract information from VHR satellite images for individual tree detection. This may lead to improved decision making for irrigation and crop water requirement purposes in future studies.

Characterizing the phylogenetic tree-search problem.

PubMed

Money, Daniel; Whelan, Simon

2012-03-01

Phylogenetic trees are important in many areas of biological research, ranging from systematic studies to the methods used for genome annotation. Finding the best scoring tree under any optimality criterion is an NP-hard problem, which necessitates the use of heuristics for tree-search. Although tree-search plays a major role in obtaining a tree estimate, there remains a limited understanding of its characteristics and how the elements of the statistical inferential procedure interact with the algorithms used. This study begins to answer some of these questions through a detailed examination of maximum likelihood tree-search on a wide range of real genome-scale data sets. We examine all 10,395 trees for each of the 106 genes of an eight-taxa yeast phylogenomic data set, then apply different tree-search algorithms to investigate their performance. We extend our findings by examining two larger genome-scale data sets and a large disparate data set that has been previously used to benchmark the performance of tree-search programs. We identify several broad trends occurring during tree-search that provide an insight into the performance of heuristics and may, in the future, aid their development. These trends include a tendency for the true maximum likelihood (best) tree to also be the shortest tree in terms of branch lengths, a weak tendency for tree-search to recover the best tree, and a tendency for tree-search to encounter fewer local optima in genes that have a high information content. When examining current heuristics for tree-search, we find that nearest-neighbor-interchange performs poorly, and frequently finds trees that are significantly different from the best tree. In contrast, subtree-pruning-and-regrafting tends to perform well, nearly always finding trees that are not significantly different to the best tree. Finally, we demonstrate that the precise implementation of a tree-search strategy, including when and where parameters are optimized, can change the character of tree-search, and that good strategies for tree-search may combine existing tree-search programs.

Totally Tree-mendous Activities: Projects To Discover the Beauty and Benefits of Trees.

ERIC Educational Resources Information Center

Hollister, Sarah

This teacher's guide supplies information and hands-on activities to teach about trees from several disciplines. Activities are grouped into six areas that cover botany, social studies, arts and literature (aesthetics), and trees as a resource. Sections include: (1) Tree Identification, which defines trees and leaves and presents activities that…

Bald eagle winter roost characteristics in Lava Beds National Monument, California

USGS Publications Warehouse

Stohlgren, Thomas J.

1993-01-01

This study provided a survey of bald eagle (Haliaeetus leucocephalus) winter roost habitat (in 4 km2 of potential roost areas) in southern Lava Beds National Monument, California. A systematic-clustered sampling design (n=381 plots) was used to compare forest stand characteristics in two primary roost areas (Caldwell Butte and Eagle Nest Butte) and two potential roost areas (Hidden Valley and Island Butte). A 100 percent inventory of roost trees in Caldwell Butte (n=103 trees) and Eagle Nest Butte (n=44 trees) showed they were spatially clumped and restricted to 12.7 percent and 2.8 percent, respectively, of the study areas. Roost trees, primarily ponderosa pine (Pinus ponderosa), averaged 81.1 ± 1.3 cm dbh (mean ± 1 S.E.) compared to non-roost trees (>35 cm dbh) that averaged 52.2 ± 1.0 cm dbh. Roost trees were generally taller and more open-structured than non-roost trees. All four study sites had adequate numbers of mid-sized trees (10 to 50 cm dbh) to replace the current stock of older, larger roost trees. However, seedling and small trees (<10 cm dbh) in the roost areas were spatially clumped and few, suggesting that maintaining a continuous population of roost trees may be a problem in the distant future. Long-term studies of changing winter roost habitat and eagle use are essential to protect the bald eagle in the northwestern US.

Current and Potential Tree Locations in Tree Line Ecotone of Changbai Mountains, Northeast China: The Controlling Effects of Topography

PubMed Central

Zong, Shengwei; Wu, Zhengfang; Xu, Jiawei; Li, Ming; Gao, Xiaofeng; He, Hongshi; Du, Haibo; Wang, Lei

2014-01-01

Tree line ecotone in the Changbai Mountains has undergone large changes in the past decades. Tree locations show variations on the four sides of the mountains, especially on the northern and western sides, which has not been fully explained. Previous studies attributed such variations to the variations in temperature. However, in this study, we hypothesized that topographic controls were responsible for causing the variations in the tree locations in tree line ecotone of the Changbai Mountains. To test the hypothesis, we used IKONOS images and WorldView-1 image to identify the tree locations and developed a logistic regression model using topographical variables to identify the dominant controls of the tree locations. The results showed that aspect, wetness, and slope were dominant controls for tree locations on western side of the mountains, whereas altitude, SPI, and aspect were the dominant factors on northern side. The upmost altitude a tree can currently reach was 2140 m asl on the northern side and 2060 m asl on western side. The model predicted results showed that habitats above the current tree line on the both sides were available for trees. Tree recruitments under the current tree line may take advantage of the available habitats at higher elevations based on the current tree location. Our research confirmed the controlling effects of topography on the tree locations in the tree line ecotone of Changbai Mountains and suggested that it was essential to assess the tree response to topography in the research of tree line ecotone. PMID:25170918

Current and potential tree locations in tree line ecotone of Changbai Mountains, Northeast China: the controlling effects of topography.

PubMed

Zong, Shengwei; Wu, Zhengfang; Xu, Jiawei; Li, Ming; Gao, Xiaofeng; He, Hongshi; Du, Haibo; Wang, Lei

2014-01-01

Tree line ecotone in the Changbai Mountains has undergone large changes in the past decades. Tree locations show variations on the four sides of the mountains, especially on the northern and western sides, which has not been fully explained. Previous studies attributed such variations to the variations in temperature. However, in this study, we hypothesized that topographic controls were responsible for causing the variations in the tree locations in tree line ecotone of the Changbai Mountains. To test the hypothesis, we used IKONOS images and WorldView-1 image to identify the tree locations and developed a logistic regression model using topographical variables to identify the dominant controls of the tree locations. The results showed that aspect, wetness, and slope were dominant controls for tree locations on western side of the mountains, whereas altitude, SPI, and aspect were the dominant factors on northern side. The upmost altitude a tree can currently reach was 2140 m asl on the northern side and 2060 m asl on western side. The model predicted results showed that habitats above the current tree line on the both sides were available for trees. Tree recruitments under the current tree line may take advantage of the available habitats at higher elevations based on the current tree location. Our research confirmed the controlling effects of topography on the tree locations in the tree line ecotone of Changbai Mountains and suggested that it was essential to assess the tree response to topography in the research of tree line ecotone.

Forest Resource Measurements by Combination of Terrestrial Laser Scanning and Drone Use

NASA Astrophysics Data System (ADS)

Cheung, K.; Katoh, M.; Horisawa, M.

2017-10-01

Using terrestrial laser scanning (TLS), forest attributes such as diameter at breast height (DBH) and tree location can be measured accurately. However, due to low penetration of laser pulses to tree tops, tree height measurements are typically underestimated. In this study, data acquired by TLS and drones were combined; DBH and tree locations were determined by TLS, and tree heights were measured by drone use. The average tree height error and root mean square error (RMSE) of tree height were 0.8 and 1.2 m, respectively, for the combined method, and -0.4 and 1.7 m using TLS alone. The tree height difference was compared using airborne laser scanning (ALS). Furthermore, a method to acquire 100 % tree detection rate based on TLS data is suggested in this study.

Foliar ozone injury on different-sized Prumus serotina Ehrh. trees

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredericksen, T.S.; Skelly, J.M.; Steiner, K.C.

1995-06-01

Black cherry (Prunus serotina Ehrh.) is a common tree species in the eastern U.S. that is highly sensitive to ozone relative to other associated deciduous tree species. Because of difficulties in conducting exposure-response experiments on large trees, air pollution studies have often utilized seedlings and extrapolated the results to predict the potential response of larger forest trees. However, physiological differences between seedlings and mature forest trees may alter responses to air pollutants. A comparative study of seedling, sapling, and canopy black cherry trees was conducted to determine the response of different-sized trees to known ozone exposures and amounts of ozonemore » uptake. Apparent foliar sensitivity to ozone, observed as a dark adaxial leaf stipple, decreased with increasing tree size. An average of 46% of seedling leaf area was symptomatic by early September, compared to 15% - 20% for saplings and canopy trees. In addition to visible symptoms, seedlings also appeared to have greater rates of early leaf abscission than larger trees. Greater sensitivity (i.e., foliar symptoms) per unit exposure with decreasing tree size was closely correlated with rates of stomatal conductance. However, after accounting for differences in stomatal conductance, sensitivity appeared to increase with tree size.« less

Differences in xylogenesis between dominant and suppressed trees.

PubMed

Liu, Shushan; Li, Xiaoxia; Rossi, Sergio; Wang, Lily; Li, Wei; Liang, Eryuan; Leavitt, Steven W

2018-05-01

Most dendroecological studies focus on dominant trees, but little is known about the growing season of trees belonging to different size classes and their sensitivity to biotic factors. The objective of this study was to compare the dynamics of xylem formation between dominant and suppressed trees of Abies fabri of similar age growing in the Gongga Mountains, southeastern Tibetan Plateau, and to identify the association between xylem growth and climate. The timing and duration of xylogenesis in histological sections were investigated weekly during the 2013-2015 growing seasons. Our investigation found that timing and duration of xylogenesis varied with canopy position and its associated tree size. Xylogenesis started 6-14 days earlier, and ended 5-11 days later in dominant trees than in suppressed trees, resulting in a significantly longer growing season. Dominant trees also exhibited higher temperature sensitivity of tracheid production rate than suppressed trees. The observed differences in xylogenesis among trees suggested that competition affects tree growth by reducing the growing period in suppressed trees. Representative climate-growth relationships should involve trees of all size classes when evaluating the effects of the environment on forest dynamics. © 2018 Botanical Society of America.

Examining the influences of tree-to-tree competition and climate on size-growth relationships in hydric, multi-aged Fraxinus nigra stands

Treesearch

Christopher E. Looney; Anthony W. D' Amato; Shawn Fraver; Brian J. Palik; Michael R. Reinikainen

2016-01-01

Most research on tree-tree competition and size-growth relationship (SGR – a stand-level metric that infers the relative efficiency with which different sized trees utilize available resources) has focused on upland systems. It is unclear if inferences from these studies extend to wetland forests. Moreover, no study to date has thoroughly investigated the relationship...

Ecohydrological interactions between soil and trees in Alpine apple orchards

NASA Astrophysics Data System (ADS)

Penna, Daniele; Scandellari, Francesca; Zanotelli, Damiano; Michael, Engel; Tagliavini, Massimo; Comiti, Francesco

2016-04-01

Tracer-based investigations of water exchanges between soil and trees in natural forested catchments are receiving relevant attention in modern ecohydrology. However, the interactions between tree water use and the hydrological cycle in agricultural environments are still poorly understood. In this work, we use stable isotopes of water (2H and 18O) and electric conductivity as tracers to improve our understanding of the functional interrelations between water generating surface runoff and recharging groundwater, and water taken up by apple trees (Malus domestica, cv. 'Pinova') in an Alpine valley in South Tyrol, Northern Italy. From April to October 2015 we monitored two orchards approximately of the same size (roughly 400 m2) and soil texture (silt loam) located in a flat area at different distance from the Adige/Etsch River (50 m vs. 450 m). We have addressed the following questions: i) at which soil depth do apple trees take up water? ii) do apple trees take up water from shallow groundwater? iii) are there differences in the isotopic composition of the water fluxes between the two sites? Samples for isotopic analysis were taken approximately fortnightly from the river, two groundwater wells close to each field, mobile soil water (from suction cups at 25 cm and 50 cm), open area precipitation, throughfall, irrigation and sap (through a portable pressure bomb). Tightly-bound soil water was also cryogenically extracted from samples taken every 10 cm from 60 cm-long soil cores taken at three locations for each field on one occasion in mid-summer. Ancillary measurements were electrical conductivity of all water sources except for sap. In addition to meteorological and discharge data, soil moisture was continuously measured at 10 cm and 50 cm in three locations, and sap flow on three trees, for each field. Preliminary results show that two water pools with distinct isotopic signature exist: i) river water, groundwater and irrigation water show values relatively depleted and consistent with the local meteoric water line, whereas ii) soil water and sap have values more enriched and deviated from the meteoric line. Soil water shows a clear evaporation signal that decreases with increasing soil depth. Sap isotopic data are inconsistent with groundwater data but reflect well soil water data in the first 40 cm. This suggests that apple trees absorb a mixture of rainfall and irrigation water which undergo partial evaporation in the shallow soil layer. Water table varies between 40 cm and 140 cm making groundwater not easily intercepted by tree roots, consistently with the small root apparatus of the apple trees grafted on M9 rootstocks. Results reveal also a marked intra-field spatial variability in the isotopic composition of soil water, and significant differences between the two fields, with the one close to the river showing significantly more depleted values compared to the one farther form the river. This difference, which is reflected by sap isotopic composition in summer, is likely related to the different radiation that hits the two fields, due to the shading effect played by steep slopes on the orchard closer to the river.

Interrogating trees as archives of sulphur deposition

NASA Astrophysics Data System (ADS)

Wynn, P. M.; Loader, N. J.; Fairchild, I. J.

2012-04-01

A principal driver of climatic variability over the past 1,000 years and essential forcing mechanism for climate, are the changes in atmospheric composition resulting from sulphur aerosols. Natural and anthropogenic aerosols released into the atmosphere disrupt the radiative balance through backscattering and absorption of incoming solar radiation and increase cloud albedo by acting as condensation nuclei. Understanding the impact of sulphur emissions upon climate beyond the last few hundred years however is not straightforward and natural archives of environmental information must be explored. Tree-rings represent one such archive as they are widely distributed and preserve environmental information within a precisely dateable, annually resolved timescale. Until recently the sulphur contained within tree-rings has largely remained beyond the reach of environmental scientists and climate modelers owing to difficulties associated with the extraction of a robust signal and uncertainties regarding post-depositional mobility. Our recent work using synchrotron radiation has established that the majority of non-labile sulphur in two conifer species is preserved within the cellular structure of the woody tissue after uptake and demonstrates an increasing trend in sulphur concentration during the 20th century and during known volcanic events. Due to the clear isotopic distinction between marine (+21), geological (+10 to +30), atmospheric pollution (-3 to +9 ) and volcanic sources of sulphur (0 to +5), isotopic ratios provide a diagnostic tool with which changes in the source of atmospheric sulphur can be detected in a more reliable fashion than concentration alone. Sulphur isotopes should thereby provide a fingerprint of short lived events including volcanic activity when extracted at high resolution and in conjunction with high resolution S concentrations defining the event. Here we present methodologies associated with extracting the sulphur isotopic signal from tree-rings using both elemental analyser isotope ratio mass spectrometry and ion probe technology. Preliminary data indicate success at extracting the sulphur isotopic signal from woody tissues at 2-3 year resolution. In conjunction with analytical developments in ion probe technology, high resolution records of localised sulphur forcing from tree-ring archives, including volcanic activity, no longer seem too far beyond the reach of climate scientists.

Spatial Patterns between Regolith Thickness and Forest Productivity in the Southern Sierra CZO

NASA Astrophysics Data System (ADS)

Ferrell, R. M.; Ferrell, D. F.; Hartsough, P. C.; O'Geen, T. T.

2015-12-01

Soil in conjunction with underlying weathered bedrock make up what is referred to as regolith, which can be thought of as the substrate that actively contributes water and nutrients to above ground biomass. As a result, regolith thickness is an important regulating factor of forest health and drought tolerance in the Sierra Nevada. Our project examined the relationships between landscape position, regolith thickness, and tree productivity within a sub watershed of the Southern Sierra Critical Zone Observatory. We hypothesized that tree productivity will increase with increasing regolith thickness. Data was collected in the summer of 2015 at sixty-five sites within a 522-ha watershed averaging 1180m in elevation with a MAP of 80cm and a MAT of 11C. Sites were randomly selected from a grid and then stratified in the field to capture representative samples from different landscape positions. Regolith was sampled using a hand auger with attachable extensions. At each site we augered to hard bedrock or a maximum depth of 7.56 m, which ever was shallower. Biomass measurements were made for all conifer species (DBH>20cm) within a 10m radius of the primary auger hole. Tree age was measured from a representative tree for all species in the plots. Preliminary findings suggest that there is a weak correlation between landscape position/slope and regolith thickness, likely due to differences in lithology. It also appears that terrain shape can result in conflicting outcomes: 1. It can focus water to promote physical and chemical weathering and thick regolith; or, 2. water focusing can result in landscape scouring, removing soil and weathered bedrock to create shallow regolith. Productivity appears to be a function of regolith thickness, effective precipitation and landscape position. Water collecting areas in the lower watershed are shallow to bedrock, but typically receive high amounts of effective precipitation resulting in greater tree productivity. Moreover, thick regolith in uplands also supports high productivity. Future work will explore the application of terrain attributes computed from DEMs to characterize the contributions of terrain and effective precipitation. As climate change continues it will become increasingly important for land managers to evaluate forest health, productivity and drought tolerance.

Tree Line Structure and Dynamics at the Northern Limit of the Larch Forest: Anabar Plateau, Siberia, Russia

NASA Technical Reports Server (NTRS)

Kharuk, Viacheslav I.; Ranson, Kenneth J.; Im, Sergey T.; Oskorbin, Pavel A.; Dvinskaya, Maria L.; Ovchinnikov, Dmitriy V.

2013-01-01

The goal of the study was to provide an analysis of climate impact before, during, and after the Little Ice Age (LIA) on the larch (Larix gmelinii) tree line at the northern extreme of Siberian forests. Recent decadal climate change impacts on the tree line, regeneration abundance, and age structure were analyzed. The location of the study area was within the forest-tundra ecotone (elevation range 170-450 m) in the Anabar Plateau, northern Siberia. Field studies were conducted along elevational transects. Tree natality/mortality and radial increment were determined based on dendrochronology analyses. Tree morphology, number of living and subfossil trees, regeneration abundance, and age structure were studied. Locations of pre-LIA, LIA, and post-LIA tree lines and refugia boundaries were established. Long-term climate variables and drought index were included in the analysis. It was found that tree mortality from the 16th century through the beginning of the 19th century caused a downward tree line recession. Sparse larch stands experienced deforestation, transforming into tundra with isolated relict trees. The maximum tree mortality and radial growth decrease were observed to have occurred at the beginning of 18th century. Now larch, at its northern boundary in Siberia, is migrating into tundra areas. Upward tree migration was induced by warming in the middle of the 19th century. Refugia played an important role in repopulation of the forest-tundra ecotone by providing a seed source and shelter for recruitment of larch regeneration. Currently this ecotone is being repopulated mainly by tree cohorts that were established after the 1930s. The last two decades of warming did not result in an acceleration of regeneration recruitment because of increased drought conditions. The regeneration line reached (but did not exceed) the pre-LIA tree line location, although contemporary tree heights and stand densities are comparatively lower than in the pre-LIA period. The mean rate of tree line upward migration has been about 0.35 m/yr (with a range of 0.21-0.58), which translates to a tree line response to temperature of about 55 m/deg C.

Metapopulation dynamics and future persistence of epiphytic cyanolichens in a European boreal forest ecosystem

PubMed Central

Fedrowitz, Katja; Kuusinen, Mikko; Snäll, Tord

2012-01-01

1. One approach to biodiversity conservation is to set aside small woodland key habitats (WKHs) in intensively managed landscapes. The aim is to support species, such as epiphytes, which often depend on old trees and are negatively affected by intensive forestry. However, it is not known whether the number of host trees within these areas can sustain species in the long term. 2. We studied metapopulation dynamics and assessed the future persistence of epiphytes assuming host tree numbers similar to those observed in large north European WKHs. The study species were seven cyanolichens confined to Populus tremula in the boreal study area. Colonizations and extinctions were recorded in 2008 on trees that had been surveyed 13 years earlier. We applied generalized (non)linear models to test the importance of environmental conditions, facilitation and spatial connectivity on the metapopulation dynamics. We also simulated the effects of tree numbers and tree fall rates on future species persistence. 3. Metapopulation dynamics were explained by tree quality, size or tree fall. In one species, colonizations increased with increasing connectivity, and in a second species it increased if other lichens sharing the photobiont with the focal species were present, suggesting facilitation. Both stochastic extinctions from standing trees and deterministic extinctions caused by tree fall should be accounted for in projecting epiphyte metapopulation dynamics. 4. One to three infrequent, sexually dispersed study species face a significant extinction risk within 50 years, especially in areas with low tree numbers. 5. Synthesis and applications. During the coming decades, infrequent, sexually dispersed, epiphytic lichens are likely to be lost from small woodland habitat set asides in intensively managed landscapes. Local extinction will be a consequence of low colonization rates and tree fall. Low colonization rates can be prevented by retaining large trees on which lichen species colonization rates are the highest and by assuring a high density of occupied trees. The negative effect of tree fall should be compensated for by assuring continuous availability of old trees. This can be achieved by decreasing the populations of large browsers, or by retaining trees with high conservation value during management operations. PMID:22745512

Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.

PubMed

Kordi, Misagh; Bansal, Mukul S

2017-06-01

Duplication-Transfer-Loss (DTL) reconciliation is a powerful method for studying gene family evolution in the presence of horizontal gene transfer. DTL reconciliation seeks to reconcile gene trees with species trees by postulating speciation, duplication, transfer, and loss events. Efficient algorithms exist for finding optimal DTL reconciliations when the gene tree is binary. In practice, however, gene trees are often non-binary due to uncertainty in the gene tree topologies, and DTL reconciliation with non-binary gene trees is known to be NP-hard. In this paper, we present the first exact algorithms for DTL reconciliation with non-binary gene trees. Specifically, we (i) show that the DTL reconciliation problem for non-binary gene trees is fixed-parameter tractable in the maximum degree of the gene tree, (ii) present an exponential-time, but in-practice efficient, algorithm to track and enumerate all optimal binary resolutions of a non-binary input gene tree, and (iii) apply our algorithms to a large empirical data set of over 4700 gene trees from 100 species to study the impact of gene tree uncertainty on DTL-reconciliation and to demonstrate the applicability and utility of our algorithms. The new techniques and algorithms introduced in this paper will help biologists avoid incorrect evolutionary inferences caused by gene tree uncertainty.

Negative feedback adjustment challenges reconstruction study from tree rings: A study case of response of Populus euphratica to river discontinuous flow and ecological water conveyance.

PubMed

Ling, Hongbo; Zhang, Pei; Guo, Bin; Xu, Hailiang; Ye, Mao; Deng, Xiaoya

2017-01-01

Drought stress changes the relationship between the growth of tree rings and variations in ambient temperature. However, it is not clear how the growth of trees changes in response to drought of varying intensities, especially in arid areas. Therefore, Tree rings were studied for 6years in Populus euphratica to assess the impacts of abrupt changes in environment on tree rings using the theories and methods in dendrohydrology, ecology and phytophysiology. The width of tree rings increased by 8.7% after ecological water conveyance downstream of Tarim River compared to that when the river water had been cut off. However, during intermediate drought, as the depth of the groundwater increases, the downward trend in the tree rings was reversed because of changes in the physiology of the tree. Therefore, the growth of tree rings shows a negative feedback to intermediate drought stress, an observation that challenges the homogenization theory of tree ring reconstruction based on the traditional methods. Owing to the time lag, the cumulative effect and the negative feedback between the growth of tree rings and drought stress, the reconstruction of past environment by studying the patterns of tree rings is often inaccurate. Our research sets out to verify the hypothesis that intermediate drought stress results in a negative feedback adjustment and thus to answers two scientific questions: (1) How does the negative feedback adjustment promote the growth of tree rings as a result of intermediate drought stress? (2) How does the negative feedback adjustment lower the accuracy with which the past is reconstructed based on tree rings? This research not only enriches the connotations of intermediate disturbance hypothesis and reconstruction theory of tree rings, but also provides a scientific basis for the conservation of desert riparian forests worldwide. Copyright © 2016 Elsevier B.V. All rights reserved.

Seismic refraction and GPR measurements of depth to bedrock: A case study from Randolph College, Virginia

NASA Astrophysics Data System (ADS)

Datta, A.; Pokharel, R.; Toteva, T.

2007-12-01

Randolph College is located in Lynchburg, VA, in the eastern edge of the Blue Ridge Mountains. Lynchburg city lies in the James River Synclinorium and consists of metasedimentary and metaigneous rocks. As part of College's plan to expand, a new soccer field will be build. For that purpose, part of a hill has to be excavated. Information was needed on the depth to the bedrock at the site. We conducted a seismic refraction experiment as part of an eight week summer research program for undergraduate students. We used 24 vertical geophones, spaced at 1.5 m interval. Our recording device was a 12 channel Geometrics geode (ES 3000). The source was an 8 pound sledge hummer. Source positions were chosen to be at 5, 10, 15 and 20 m on both sides of the array. We collected data along a tree line (in two segments) and across a hockey field. The data collected from the hockey field had very low signal to noise ratio and clear refraction arrivals. The other two acquisition lines were much noisier and difficult to interpret. Our results are consistent with data from seven bore holes in close proximity to the field site. We interpreted depth to bedrock to be between 4 and 12 m. The bedrock velocities are consistent with weathered gneiss. To improve the interpretation of the tree line records, we conducted a GPR survey. The preliminary radar images are showing highly heterogeneous subsurface with multiple point reflectors.

Quantifying ecosystem carbon losses and gains following development in New England: A combined field, modeling, and remote sensing approach

NASA Astrophysics Data System (ADS)

Raciti, S. M.; Hutyra, L.; Briber, B. M.; Dunn, A. L.; Friedl, M. A.; Woodcock, C.; Zhu, Z.; Olofsson, P.

2013-12-01

If current trends continue, the world's urban population may double and urban land area may quadruple over the next 50 years. Despite the rapid expansion of urban areas, the trajectories of carbon losses and gains following development remain poorly quantified. We are using a combination of field measurements, modeling, and remote sensing to advance our ability to measure and monitor trajectories of ecosystem carbon over space and time. To characterize how carbon stocks change across urban-to-rural gradients, we previously established field plots to survey live and dead tree biomass, tree canopy, soil and foliar carbon and nitrogen concentrations, and a range of landscape characteristics (Raciti et al. 2012). In 2013, we extended our field sampling to focus specifically on places that experienced land use and land cover change over the past 35 years. This chronosequence approach was informed by Landsat time series (1982-present) and property records (before 1982). The Landsat time series approach differs from traditional remote-sensing-based land use change detection methods because it leverages the entire Landsat archive of imagery using a Fourier fitting approach (Zhu et al. 2012). The result is a temporally and spatially continuous map of land use and land cover change across the study region. We used these field and remote sensing data to inform a carbon bookkeeping model that estimates changes in past and potential future carbon stocks over time. Here we present preliminary results of this work for eastern Massachusetts.

Phylogeny of nodulation genes and symbiotic diversity of Acacia senegal (L.) Willd. and A. seyal (Del.) Mesorhizobium strains from different regions of Senegal.

PubMed

Bakhoum, Niokhor; Galiana, Antoine; Le Roux, Christine; Kane, Aboubacry; Duponnois, Robin; Ndoye, Fatou; Fall, Dioumacor; Noba, Kandioura; Sylla, Samba Ndao; Diouf, Diégane

2015-04-01

Acacia senegal and Acacia seyal are small, deciduous legume trees, most highly valued for nitrogen fixation and for the production of gum arabic, a commodity of international trade since ancient times. Symbiotic nitrogen fixation by legumes represents the main natural input of atmospheric N2 into ecosystems which may ultimately benefit all organisms. We analyzed the nod and nif symbiotic genes and symbiotic properties of root-nodulating bacteria isolated from A. senegal and A. seyal in Senegal. The symbiotic genes of rhizobial strains from the two Acacia species were closed to those of Mesorhizobium plurifarium and grouped separately in the phylogenetic trees. Phylogeny of rhizobial nitrogen fixation gene nifH was similar to those of nodulation genes (nodA and nodC). All A. senegal rhizobial strains showed identical nodA, nodC, and nifH gene sequences. By contrast, A. seyal rhizobial strains exhibited different symbiotic gene sequences. Efficiency tests demonstrated that inoculation of both Acacia species significantly affected nodulation, total dry weight, acetylene reduction activity (ARA), and specific acetylene reduction activity (SARA) of plants. However, these cross-inoculation tests did not show any specificity of Mesorhizobium strains toward a given Acacia host species in terms of infectivity and efficiency as stated by principal component analysis (PCA). This study demonstrates that large-scale inoculation of A. senegal and A. seyal in the framework of reafforestation programs requires a preliminary step of rhizobial strain selection for both Acacia species.

National Forest Health Monitoring Program Maryland and Massachusetts Street Tree Monitoring Pilot Projects

Treesearch

Buckelew Cumming Anne; Daniel Twardus; William Smith

2006-01-01

Urban forests have many components: park trees, small woodlands, riparian buffers, street trees, and others. While some communities conduct city-wide inventories of street tree populations, there has been no comprehensive, statewide sampling to characterize the structure, health, and function of street tree populations. A statewide Street Tree Monitoring pilot study...

Epicormic branching on hardwood trees bordering forest openings

Treesearch

G.R., Jr. Trimble; Donald W. Seegrist; Donald W. Seegrist

1973-01-01

Epicormic branching in hardwoods can degrade logs and reduce the dollar returns from growing trees. A study made around clearcut openings of various sizes showed that the following variables were related to the degree of epicormic branching on trees bordering the openings: size of opening, species, tree dominance class, exposure of tree bole, and position on tree bole...

Red Reveals Branch Die-back in Norway Maple Acer platanoides

PubMed Central

Sinkkonen, Aki

2008-01-01

Background and Aims Physiological data suggest that autumn leaf colours of deciduous trees are adaptations to environmental stress. Recently, the evolution of autumn colouration has been linked to tree condition and defence. Most current hypotheses presume that autumn colours vary between tree individuals. This study was designed to test if within-tree variation should be taken into account in experimental and theoretical research on autumn colouration. Methods Distribution of red autumn leaf colours was compared between partially dead and vigorous specimens of Norway maple (Acer platanoides) in a 3-year study. In August, the amount of reddish foliage was estimated in pairs of partially dead and control trees. Within-tree variation in the distribution of reddish leaves was evaluated. Leaf nitrogen and carbon concentrations were analysed. Key Results Reddish leaf colours were more frequent in partially dead trees than in control trees. Reddish leaves were evenly distributed in control trees, while patchiness of red leaf pigments was pronounced in partially dead trees. Large patches of red leaves were found beneath or next to dead tree parts. These patches reoccurred every year. Leaf nitrogen concentration was lower in reddish than in green leaves but the phenomenon seemed similar in both partially dead and control trees. Conclusions The results suggest that red leaf colouration and branch condition are interrelated in Norway maple. Early reddish colours may be used as an indication of leaf nitrogen and carbon levels but not as an indication of tree condition. Studies that concentrate on entire trees may not operate at an optimal level to detect the evolutionary mechanisms behind autumnal leaf colour variation. PMID:18567914

Variation in photosynthesis and stomatal conductance among red maple (Acer rubrum) urban planted cultivars and wildtype trees in the southeastern United States.

PubMed

Lahr, Eleanor C; Dunn, Robert R; Frank, Steven D

2018-01-01

Photosynthesis is a fundamental process that trees perform over fluctuating environmental conditions. This study of red maple (Acer rubrum L.) characterizes photosynthesis, stomatal conductance, and water use efficiency in planted cultivars relative to wildtype trees. Red maple is common in cities, yet there is little understanding of how physiological processes affect the long-term growth, condition, and ecosystem services provided by urban trees. In the first year of our study, we measured leaf-level gas exchange and performed short-term temperature curves on urban planted cultivars and on suburban and rural wildtype trees. In the second year, we compared urban planted cultivars and urban wildtype trees. In the first year, urban planted trees had higher maximum rates of photosynthesis and higher overall rates of photosynthesis and stomatal conductance throughout the summer, relative to suburban or rural wildtype trees. Urban planted trees again had higher maximum rates of photosynthesis in the second year. However, urban wildtype trees had higher water use efficiency as air temperatures increased and similar overall rates of photosynthesis, relative to cultivars, in mid and late summer. Our results show that physiological differences between cultivars and wildtype trees may relate to differences in their genetic background and their responses to local environmental conditions, contingent on the identity of the horticultural variety. Overall, our results suggest that wildtype trees should be considered for some urban locations, and our study is valuable in demonstrating how site type and tree type can inform tree planting strategies and improve long-term urban forest sustainability.

Red reveals branch die-back in Norway maple Acer platanoides.

PubMed

Sinkkonen, Aki

2008-09-01

Physiological data suggest that autumn leaf colours of deciduous trees are adaptations to environmental stress. Recently, the evolution of autumn colouration has been linked to tree condition and defence. Most current hypotheses presume that autumn colours vary between tree individuals. This study was designed to test if within-tree variation should be taken into account in experimental and theoretical research on autumn colouration. Distribution of red autumn leaf colours was compared between partially dead and vigorous specimens of Norway maple (Acer platanoides) in a 3-year study. In August, the amount of reddish foliage was estimated in pairs of partially dead and control trees. Within-tree variation in the distribution of reddish leaves was evaluated. Leaf nitrogen and carbon concentrations were analysed. Reddish leaf colours were more frequent in partially dead trees than in control trees. Reddish leaves were evenly distributed in control trees, while patchiness of red leaf pigments was pronounced in partially dead trees. Large patches of red leaves were found beneath or next to dead tree parts. These patches reoccurred every year. Leaf nitrogen concentration was lower in reddish than in green leaves but the phenomenon seemed similar in both partially dead and control trees. The results suggest that red leaf colouration and branch condition are interrelated in Norway maple. Early reddish colours may be used as an indication of leaf nitrogen and carbon levels but not as an indication of tree condition. Studies that concentrate on entire trees may not operate at an optimal level to detect the evolutionary mechanisms behind autumnal leaf colour variation.

Responses of Tree Growths to Tree Size, Competition, and Topographic Conditions in Sierra Nevada Forests Using Bi-temporal Airborne LiDAR Data

NASA Astrophysics Data System (ADS)

Ma, Q.; Su, Y.; Tao, S.; Guo, Q.

2016-12-01

Trees in the Sierra Nevada (SN) forests are experiencing rapid changes due to human disturbances and climatic changes. An improved monitoring of tree growth and understanding of how tree growth responses to different impact factors, such as tree competition, forest density, topographic and hydrologic conditions, are urgently needed in tree growth modeling. Traditional tree growth modeling mainly relied on field survey, which was highly time-consuming and labor-intensive. Airborne Light detection and ranging System (ALS) is increasingly used in forest survey, due to its high efficiency and accuracy in three-dimensional tree structure delineation and terrain characterization. This study successfully detected individual tree growth in height (ΔH), crown area (ΔA), and crown volume (ΔV) over a five-year period (2007-2012) using bi-temporal ALS data in two conifer forest areas in SN. We further analyzed their responses to original tree size, competition indices, forest structure indices, and topographic environmental parameters at individual tree and forest stand scales. Our results indicated ΔH was strongly sensitive to topographic wetness index; whereas ΔA and ΔV were highly responsive to forest density and original tree sizes. These ALS based findings in ΔH were consistent with field measurements. Our study demonstrated the promising potential of using bi-temporal ALS data in forest growth measurements and analysis. A more comprehensive study over a longer temporal period and a wider range of forest stands would give better insights into tree growth in the SN, and provide useful guides for forest growth monitoring, modeling, and management.

Relationships between tree size, crown shape, gender segregation and sex allocation in Pinus halepensis, a Mediterranean pine tree.

PubMed

Ne'eman, Gidi; Goubitz, Shirrinka; Werger, Marinus J A; Shmida, Avi

2011-07-01

Sex allocation has been studied mainly in small herbaceous plants but much less in monoecious wind-pollinated trees. The aim of this study was to explore changes in gender segregation and sex allocation by Pinus halepensis, a Mediterranean lowland pine tree, within tree crowns and between trees differing in their size or crown shape. The production of new male and female cones and sex allocation of biomass, nitrogen and phosphorus were studied. The relationship between branch location, its reproductive status and proxies of branch vigour was also studied. Small trees produced only female cones, but, as trees grew, they produced both male and female cones. Female cones were produced mainly in the upper part of the crown, and male cones in its middle and lower parts. Lateral branch density was correlated with the number of male but not female cones; lateral branches were more dense in large than in small trees and even denser in hemispherical trees. Apical branches grew faster, were thicker and their phosphorus concentration was higher than in lateral shoots. Nitrogen concentration was higher in cone-bearing apical branches than in apical vegetative branches and in lateral branches with or without cones. Allocation to male relative to female function increased with tree size as predicted by sex allocation theory. The adaptive values of sex allocation and gender segregation patterns in P. halepensis, in relation to its unique life history, are demonstrated and discussed. Small trees produce only female cones that have a higher probability of being pollinated than the probability of male cones pollinating; the female-first strategy enhances population spread. Hemispherical old trees are loaded with serotinous cones that supply enough seeds for post-fire germination; thus, allocation to males is more beneficial than to females.

Nitrogen Fertilization Effects on Net Ecosystem and Net Primary Productivities as Determined from Flux Tower, Biometric, and Model Estimates for a Coastal Douglas-fir Forest in British Columbia

NASA Astrophysics Data System (ADS)

Trofymow, J. A.; Metsaranta, J. M.; Black, T. A.; Jassal, R. S.; Filipescu, C.

2013-12-01

In coastal BC, 6,000-10,000 ha of public and significant areas of private forest land are annually fertilized with nitrogen, with or without thinning, to increase merchantable wood and reduce rotation age. Fertilization has also been viewed as a way to increase carbon (C) sequestration in forests and obtain C offsets. Such offset projects must demonstrate additionality with reference to a baseline and include monitoring to verify net C gains over the project period. Models in combination with field-plot measurements are currently the accepted methods for most C offset protocols. On eastern Vancouver Island, measurements of net ecosystem production (NEP), ecosystem respiration (Re) and gross primary productivity (GPP) using the eddy-covariance (EC) technique as well as component C fluxes and stocks have been made since 1998 in an intermediate-aged Douglas-fir dominated forest planted in 1949. In January 2007 an area around the EC flux tower was aerially fertilized with 200 kg urea-N ha-1. Ground plots in the fertilized area and an adjacent unfertilized control area were also monitored for soil (Rs) and heterotrophic (Rh) respiration, litterfall, and tree growth. To determine fertilization effects on whole tree growth, sample trees were felled in both areas for the 4-year (2003-06) pre- and the 4-year (2007-10) post-fertilization periods and were compared with EC NEP estimates and tree-ring based NEP estimates from Carbon Budget Model - Canadian Forest Sector (CBM-CFS3) for the same periods. Empirical equations using climate and C fluxes from 1998-2006 were derived to estimate what the EC fluxes would have been in 2007-10 for the fertilized area had it been unfertilized. Mean EC NEP for 2007-10 was 561 g C m2 y-1 , a 64% increase above pre-fertilization NEP (341 g C m2 y-1) or 28% increase above estimated unfertilized NEP (438 g C m2 y-1). Most of the increase was attributed to increased tree C uptake (i.e., GPP), with little change in Re. In 2007 fertilization caused a small increase in Rs and litter decay, and a small decrease in Rh. Litterfall rates averaged 100 g C m2 y-1 and did not differ between fertilized and control plots. Stem wood increments for 2007-10 indicated aboveground growth in fertilized trees was 35% greater than in control trees. However this was due to fertilized tree growth being 30% greater and control trees 5% less when compared to growth in the pre-fertilization period. Preliminary examination of root wood increments indicated that the post-fertilization growth was less than pre-fertilization growth, suggesting that the post-fertilization NPP was lower than if just estimated from stem wood. Mean CBM-CFS3 NEP for seven groundplots around the tower were 465 g C m2 y-1 for 2007-10, a 34% increase above pre-fertilization model NEP (347 g C m2 y-1). Using post- and pre-fertilization values, fertilization effects on EC NEP (64%) were nearly twice that of CBM-CFS3 model NEP (34%) or biometric tree growth (30%). However, if fertilized and unfertilized control values for 2007-10 were used; fertilization effects on EC NEP (28%) were comparable to those from biometric tree growth (35%). Results suggest choice of an appropriate baseline will be important in determining the C gains of forest C offset projects.

Identification of the full-length β-actin sequence and expression profiles in the tree shrew (Tupaia belangeri).

PubMed

Zheng, Yu; Yun, Chenxia; Wang, Qihui; Smith, Wanli W; Leng, Jing

2015-02-01

The tree shrew (Tupaia belangeri) diverges from the primate order (Primates) and is classified as a separate taxonomic group of mammals - Scandentia. It has been suggested that the tree shrew can be used as an animal model for studying human diseases; however, the genomic sequence of the tree shrew is largely unidentified. In the present study, we reported the full-length cDNA sequence of the housekeeping gene, β-actin, in the tree shrew. The amino acid sequence of β-actin in the tree shrew was compared to that of humans and other species; a simple phylogenetic relationship was discovered. Quantitative polymerase chain reaction (qPCR) and western blot analysis further demonstrated that the expression profiles of β-actin, as a general conservative housekeeping gene, in the tree shrew were similar to those in humans, although the expression levels varied among different types of tissue in the tree shrew. Our data provide evidence that the tree shrew has a close phylogenetic association with humans. These findings further enhance the potential that the tree shrew, as a species, may be used as an animal model for studying human disorders.

What is the danger of the anomaly zone for empirical phylogenetics?

PubMed

Huang, Huateng; Knowles, L Lacey

2009-10-01

The increasing number of observations of gene trees with discordant topologies in phylogenetic studies has raised awareness about the problems of incongruence between species trees and gene trees. Moreover, theoretical treatments focusing on the impact of coalescent variance on phylogenetic study have also identified situations where the most probable gene trees are ones that do not match the underlying species tree (i.e., anomalous gene trees [AGTs]). However, although the theoretical proof of the existence of AGTs is alarming, the actual risk that AGTs pose to empirical phylogenetic study is far from clear. Establishing the conditions (i.e., the branch lengths in a species tree) for which AGTs are possible does not address the critical issue of how prevalent they might be. Furthermore, theoretical characterization of the species trees for which AGTs may pose a problem (i.e., the anomaly zone or the species histories for which AGTs are theoretically possible) is based on consideration of just one source of variance that contributes to species tree and gene tree discord-gene lineage coalescence. Yet, empirical data contain another important stochastic component-mutational variance. Estimated gene trees will differ from the underlying gene trees (i.e., the actual genealogy) because of the random process of mutation. Here, we take a simulation approach to investigate the prevalence of AGTs, among estimated gene trees, thereby characterizing the boundaries of the anomaly zone taking into account both coalescent and mutational variances. We also determine the frequency of realized AGTs, which is critical to putting the theoretical work on AGTs into a realistic biological context. Two salient results emerge from this investigation. First, our results show that mutational variance can indeed expand the parameter space (i.e., the relative branch lengths in a species tree) where AGTs might be observed in empirical data. By exploring the underlying cause for the expanded anomaly zone, we identify aspects of empirical data relevant to avoiding the problems that AGTs pose for species tree inference from multilocus data. Second, for the empirical species histories where AGTs are possible, unresolved trees-not AGTs-predominate the pool of estimated gene trees. This result suggests that the risk of AGTs, while they exist in theory, may rarely be realized in practice. By considering the biological realities of both mutational and coalescent variances, the study has refined, and redefined, what the actual challenges are for empirical phylogenetic study of recently diverged taxa that have speciated rapidly-AGTs themselves are unlikely to pose a significant danger to empirical phylogenetic study.

Mycelial abundance and other factors related to truffle productivity in Tuber melanosporum-Quercus ilex orchards.

PubMed

Suz, Laura M; Martín, María P; Oliach, Daniel; Fischer, Christine R; Colinas, Carlos

2008-08-01

Relative quantification of DNA from Tuber melanosporum mycelia was performed by conventional and real-time PCR in soil from trees in three truffle orchards of different ages to determine: (1) whether burn appearance is related to the amount of T. melanosporum mycelium in soil, and (2) whether productivity onset and truffle production are related to (a) the amount of T. melanosporum mycelium in soil, (b) tree height and diameter, (c) burn extension and (d) surface rock cover. The burn seems to appear only after a certain amount of mycelium has formed. Precociously productive trees presented higher quantities of mycelium than nonproductive trees in the productivity onset study, while highly productive trees presented less quantities of mycelium than nonproductive trees in the productivity study. Trees with high but not excessive surface rock cover showed greater truffle production. Larger trees tended to display a burn earlier than smaller trees.

USE OF NATIVE PLANTS FOR REMEDIATION OF TRICHLOROETHYLENE: I. DECIDUOUS TREES.

PubMed

Strycharz, S; Newman, L

2009-02-01

Phytoremediation of trichloroethylene (TCE) can be accomplished using fast-growing, deep-rooting trees. The most commonly used tree for phytoremediation of TCE has been the hybrid poplar. This study looks at native southeastern trees of the United States as alternatives to the use of hybrid poplar. The use of native trees for phytoremediation allows for simultaneous restoration of contaminated sites. A 2-mo, greenhouse-based study was conducted to determine if sycamore (Plantanus L.), eastern cottonwood (Populus deltoides), sweetgum (Liquidambar styraciflua L.), and willow (Salix sachalinensis) trees possess the ability to degrade TCE by assessing TCE metabolite formation in the plant tissue. In addition to the metabolic capabilities of each tree species, growth parameters were measured including change in height, water usage, total fresh weight of each tissue type, and calculated total leaf surface area. Willow trees had the greatest increase in height among all trees tested; however, at higher concentrations TCE inhibits growth. Sycamore trees had the highest overall leaf surface area and total biomass, which correlated with sycamore trees also having the highest average water usage over the course of the experiment. Carbon tubes used to sample transpiration gases from sycamore, sweetgum, and cottonwood trees did not contain detectable levels of TCE. Tenex sample collection tubes used to sample willow trees during TCE exposure showed average TCE concentrations of up to 0.354 ng TCE cm -2 leaf tissue. All exposed trees contained TCE in the root, stem, and leaf tissues. The concentration of TCE remaining in tissues at the conclusion of the experiment varied, with the highest levels found in the roots and the lowest levels found in the leaves. Metabolites were also observed in different tissue types of all trees tested. The highest concentrations of trichloroacetic acid were observed in the leaves of the sycamore trees and cottonwood trees. Based on the growth parameters tested and the ability to metabolize TCE, sycamore and native cottonwood species are the best candidates for phytoremediation from this study.

Solar and Climate Variation Relationships Analyzed from Chile Tree Ring Width Time Series (1587 - 1994 A.D.)

NASA Astrophysics Data System (ADS)

Rigozo, Nr; Nordemann, Djr; Faria, Hh; Echer, E.; Vieira, Lea; Prestes, A.

This work presents a study of the relations between solar and climate variations during the last four centuries by spectral analysis of tree ring index and sunspot number time series. Trees used for this study were Pilgerodendron cupressoides from Glaciar Pio XI, in Chile. The spectral analysis of tree ring index shows that 11, 22 and 80 year periodicities of the solar cycle were present in this tree ring data with 0.95 confidence level. This result suggests a solar modulation of climate variations, as recorded by the tree ring growth. Short-term variations, between 2 - 7 years, are also present in tree ring data. Therefore spectral analysis clearly shows that both, solar and climate factors, are recorded in the tree ring data.

Tree-mediated methane emissions from tropical and temperate peatlands.

NASA Astrophysics Data System (ADS)

Pangala, S. R.; Gauci, V.; Hornibrook, E. R. C.; Gowing, D. J.

2012-04-01

Methane production and transport processes in peatlands are fairly well understood, but growing evidence for emission of methane through trees has highlighted the need to revisit methane transport processes. In wetland trees, morphological adaptations such as development of hypertrophied lenticels, aerenchyma and adventitious roots in response to soil anoxia mediates gas transport, transporting both oxygen from the atmosphere to oxygen-deprived roots and soil-produced methane from the root-zone to the atmosphere. Although, tree-mediated methane emissions from temperate tree species have been confirmed, methane emissions from tropical tree species and processes that control tree-mediated methane emissions remain unclear. This study explains the role of trees in transporting soil-produced methane to the atmosphere and uncovers the principal mechanisms of tree-mediated methane emissions. Methane emissions from eight tropical tree species and two temperate tree species were studied in situ. The mechanisms and controls on tree-mediated methane emissions were investigated using three year old common alder (Alnus glutinosa; 50 trees) grown under two artificially controlled water-table positions. Methane fluxes from whole mesocosms, the soil surface and tree stems were measured using static closed chambers. Both temperate and tropical tree species released significant quantities of methane, with tropical trees dominating ecosystem level methane fluxes. In temperate peatlands, both the methane gas transport mechanism and quantity of methane emitted from stems is tree-species dependent. In Alnus glutinosa, no correlations were observed between stomatal behaviour and tree-mediated methane emissions, however, stem methane emissions were positively correlated with both stem lenticel density and dissolved soil methane concentration. In Alnus glutinosa, no emissions were observed from leaf surfaces. The results demonstrate that exclusion of tree-mediated methane emissions from flux measurement campaigns in forested peatlands will lead to an underestimation of ecosystem-wide methane emissions.

Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: a case study for analysing fungal environmental samples.

PubMed

U'ren, Jana M; Dalling, James W; Gallery, Rachel E; Maddison, David R; Davis, E Christine; Gibson, Cara M; Arnold, A Elizabeth

2009-04-01

Fungi associated with seeds of tropical trees pervasively affect seed survival and germination, and thus are an important, but understudied, component of forest ecology. Here, we examine the diversity and evolutionary origins of fungi isolated from seeds of an important pioneer tree (Cecropia insignis, Cecropiaceae) following burial in soil for five months in a tropical moist forest in Panama. Our approach, which relied on molecular sequence data because most isolates did not sporulate in culture, provides an opportunity to evaluate several methods currently used to analyse environmental samples of fungi. First, intra- and interspecific divergence were estimated for the nu-rITS and 5.8S gene for four genera of Ascomycota that are commonly recovered from seeds. Using these values we estimated species boundaries for 527 isolates, showing that seed-associated fungi are highly diverse, horizontally transmitted, and genotypically congruent with some foliar endophytes from the same site. We then examined methods for inferring the taxonomic placement and phylogenetic relationships of these fungi, evaluating the effects of manual versus automated alignment, model selection, and inference methods, as well as the quality of BLAST-based identification using GenBank. We found that common methods such as neighbor-joining and Bayesian inference differ in their sensitivity to alignment methods; analyses of particular fungal genera differ in their sensitivity to alignments; and numerous and sometimes intricate disparities exist between BLAST-based versus phylogeny-based identification methods. Lastly, we used our most robust methods to infer phylogenetic relationships of seed-associated fungi in four focal genera, and reconstructed ancestral states to generate preliminary hypotheses regarding the evolutionary origins of this guild. Our results illustrate the dynamic evolutionary relationships among endophytic fungi, pathogens, and seed-associated fungi, and the apparent evolutionary distinctiveness of saprotrophs. Our study also elucidates the diversity, taxonomy, and ecology of an important group of plant-associated fungi and highlights some of the advantages and challenges inherent in the use of ITS data for environmental sampling of fungi.

Spatial Distribution Patterns in the Very Rare and Species-Rich Picea chihuahuana Tree Community (Mexico).

PubMed

Wehenkel, Christian; Brazão-Protázio, João Marcelo; Carrillo-Parra, Artemio; Martínez-Guerrero, José Hugo; Crecente-Campo, Felipe

2015-01-01

The very rare Mexican Picea chihuahuana tree community covers an area of no more than 300 ha in the Sierra Madre Occidental. This special tree community has been the subject of several studies aimed at learning more about the genetic structure and ecology of the species and the potential effects of climate change. The spatial distribution of trees is a result of many ecological processes and can affect the degree of competition between neighbouring trees, tree density, variability in size and distribution, regeneration, survival, growth, mortality, crown formation and the biological diversity within forest communities. Numerous scale-dependent measures have been established in order to describe spatial forest structure. The overall aim of most of these studies has been to obtain data to help design preservation and conservation strategies. In this study, we examined the spatial distribution pattern of trees in the P. chihuahuana tree community in 12 localities, in relation to i) tree stand density, ii) diameter distribution (vertical structure), iii) tree species diversity, iv) geographical latitude and v) tree dominance at a fine scale (in 0.25 ha plots), with the aim of obtaining a better understanding of the complex ecosystem processes and biological diversity. Because of the strongly mixed nature of this tree community, which often produces low population densities of each tree species and random tree fall gaps caused by tree death, we expect aggregated patterns in individual Picea chihuahuana trees and in the P. chihuahuana tree community, repulsive Picea patterns to other tree species and repulsive patterns of young to adult trees. Each location was represented by one plot of 50 x 50 m (0.25 ha) established in the centre of the tree community. The findings demonstrate that the hypothesis of aggregated tree pattern is not applicable to the mean pattern measured by Clark-Evans index, Uniform Angle index and Mean Directional index of the uneven-aged P. chihuahuana trees and P. chihuahuana tree community and but to specific spatial scales measured by the univariate L-function. The spatial distribution pattern of P. chihuahuana trees was found to be independent of patches of other tree species measured by the bivariate L-function. The spatial distribution was not significantly related to tree density, diameter distribution or tree species diversity. The index of Clark and Evans decreased significantly from the southern to northern plots containing all tree species. Self-thinning due to intra and inter-specific competition-induced mortality is probably the main cause of the decrease in aggregation intensity during the course of population development in this tree community. We recommend the use of larger sampling plots (> 0.25 ha) in uneven-aged and species-rich forest ecosystems to detect less obvious, but important, relationships between spatial tree pattern and functioning and diversity in these forests.

Spatial Distribution Patterns in the Very Rare and Species-Rich Picea chihuahuana Tree Community (Mexico)

PubMed Central

Wehenkel, Christian; Brazão-Protázio, João Marcelo; Carrillo-Parra, Artemio; Martínez-Guerrero, José Hugo; Crecente-Campo, Felipe

2015-01-01

The very rare Mexican Picea chihuahuana tree community covers an area of no more than 300 ha in the Sierra Madre Occidental. This special tree community has been the subject of several studies aimed at learning more about the genetic structure and ecology of the species and the potential effects of climate change. The spatial distribution of trees is a result of many ecological processes and can affect the degree of competition between neighbouring trees, tree density, variability in size and distribution, regeneration, survival, growth, mortality, crown formation and the biological diversity within forest communities. Numerous scale-dependent measures have been established in order to describe spatial forest structure. The overall aim of most of these studies has been to obtain data to help design preservation and conservation strategies. In this study, we examined the spatial distribution pattern of trees in the P. chihuahuana tree community in 12 localities, in relation to i) tree stand density, ii) diameter distribution (vertical structure), iii) tree species diversity, iv) geographical latitude and v) tree dominance at a fine scale (in 0.25 ha plots), with the aim of obtaining a better understanding of the complex ecosystem processes and biological diversity. Because of the strongly mixed nature of this tree community, which often produces low population densities of each tree species and random tree fall gaps caused by tree death, we expect aggregated patterns in individual Picea chihuahuana trees and in the P. chihuahuana tree community, repulsive Picea patterns to other tree species and repulsive patterns of young to adult trees. Each location was represented by one plot of 50 x 50 m (0.25 ha) established in the centre of the tree community. The findings demonstrate that the hypothesis of aggregated tree pattern is not applicable to the mean pattern measured by Clark-Evans index, Uniform Angle index and Mean Directional index of the uneven-aged P. chihuahuana trees and P. chihuahuana tree community and but to specific spatial scales measured by the univariate L-function. The spatial distribution pattern of P. chihuahuana trees was found to be independent of patches of other tree species measured by the bivariate L-function. The spatial distribution was not significantly related to tree density, diameter distribution or tree species diversity. The index of Clark and Evans decreased significantly from the southern to northern plots containing all tree species. Self-thinning due to intra and inter-specific competition-induced mortality is probably the main cause of the decrease in aggregation intensity during the course of population development in this tree community. We recommend the use of larger sampling plots (> 0.25 ha) in uneven-aged and species-rich forest ecosystems to detect less obvious, but important, relationships between spatial tree pattern and functioning and diversity in these forests. PMID:26496189

Local versus landscape-scale effects of savanna trees on grasses

USGS Publications Warehouse

Riginos, C.; Grace, J.B.; Augustine, D.J.; Young, T.P.

2009-01-01

1. Savanna ecosystems - defined by the coexistence of trees and grasses - cover more than one-fifth the world's land surface and harbour most of the world's rangelands, livestock and large mammal diversity. Savanna trees can have a variety of effects on grasses, with consequences for the wild and domestic herbivores that depend on them. 2.Studies of these effects have focused on two different spatial scales. At the scale of individual trees, many studies have shown net positive effects of trees on sub-canopy grass nutrient concentrations and biomass. At the landscape scale, other studies have shown negative effects of high tree densities on grass productivity. These disparate results have led to different conclusions about the effects of trees on forage quality and ungulate nutrition in savannas. 3.We integrate these approaches by examining the effects of trees on grasses at both spatial scales and across a range of landscape-scale tree densities. 4.We quantified grass biomass, species composition and nutrient concentrations in these different contexts in an Acacia drepanolobium savanna in Laikipia, Kenya. Individual trees had positive effects on grass biomass, most likely because trees enrich soil nitrogen. Grass leaf phosphorus in sub-canopy areas, however, was depressed. The effects of individual trees could explain the effects of increasing landscape-scale tree cover for the biomass of only two of the four dominant grass species. 5.The negative effects of trees on grass and soil phosphorus, combined with depressed grass productivity in areas of high tree cover, suggest that ungulate nutrition may be compromised in areas with many trees. 6.Synthesis. We conclude that few, isolated trees may have positive local effects on savanna grasses and forage, but in areas of high tree density the negative landscape-scale effects of trees are likely to outweigh these positive effects. In savannas and other patchy landscapes, attempts to predict the consequences of changes in patch abundances for ecosystem services (e.g. rangeland productivity and carbon sequestration) will depend on our understanding of the extent to which local, patch-scale dynamics do or do not predict landscape-scale dynamics. ?? 2009 British Ecological Society.

Monitoring Million Trees LA: Tree performance during the early years and future benefits

Treesearch

E. Gregory McPherson

2014-01-01

Million Trees LA (MTLA) is one of several large-scale mayoral tree planting initiatives striving to create more livable cities through urban forestry. This study combined field sampling of tree survival and growth with numerical modeling of future benefits to assess performance of MTLA plantings. From 2006 to 2010 MTLA planted a diverse mix of 91,786 trees....

Evaluation of the seasonal and annual abortifacient risk of western juniper trees on Oregon rangelands: Abortion risk of western juniper trees

USDA-ARS?s Scientific Manuscript database

Western juniper trees can cause late term abortions in cattle, similar to ponderosa pine trees. Analyses of western juniper trees from 35 locations across the state of Oregon suggest that western juniper trees in all areas present an abortion risk in pregnant cattle. Results from this study demonstr...

Determinants of establishment survival for residential trees in Sacramento County, CA

Treesearch

Lara A. Roman; John J. Battles; Joe R. McBride

2014-01-01

Urban forests can provide ecosystem services that motivate tree planting campaigns, and tree survival is a key element of program success and projected benefits. We studied survival in a shade tree give-away program in Sacramento, CA, monitoring a cohort of young trees for five years on single-family residential properties. We used conditional inference trees to...

Variability in early height growth rate of forest trees: implications for retrospective studies of stand dynamics

Treesearch

Brain J. Palik; Kurt S. Pregitzer

1995-01-01

Retrospective studies of forest stand dynamics may rely on estimates of tree ages. In some of these studies, trees are aged near the stem base, while in other studies trees may be aged at breast height. An age correction may be added to breast-height ages in an attempt to account for average time to reach breast height and thus provide better estimates of total ages....

Guide to the measurement of tree characteristics important to the quality classification for young hardwood trees

Treesearch

David L. Sonderman

1979-01-01

A procedure is shown for measuring external tree characteristics that are important in determining the current and future quality of young hardwood trees. This guide supplements a precious study which describes the quality classification system for young hardwood trees

Growing a Forest for the Trees.

ERIC Educational Resources Information Center

Growing Ideas, 2001

2001-01-01

Describes a tree studies program in a fourth-grade classroom. Students collected local tree seeds and seeds from supermarket fruits, researched growing conditions, and grew seeds under various conditions. Students kept journals on local trees, observing seed dispersal mechanisms and examining rings on trunk slices. Inquiry-based tree studies…

Independent effects and interactions of stand diameter, tree diameter, crown class, and age on tree growth in mixed-species, even-aged hardwood stands

Treesearch

D.A. Marquis

1991-01-01

Many studies have shown that initial tree diameter is closely correlated with subsequent tree growth. But initial tree diameter is actually a confounded variable, incorporating both competitive position (crown class) and age.

Channel fading for mobile satellite communications using spread spectrum signaling and TDRSS

NASA Technical Reports Server (NTRS)

Jenkins, Jeffrey D.; Fan, Yiping; Osborne, William P.

1995-01-01

This paper will present some preliminary results from a propagation experiment which employed NASA's TDRSS and an 8 MHz chip rate spread spectrum signal. Channel fade statistics were measured and analyzed in 21 representative geographical locations covering urban/suburban, open plain, and forested areas. Cumulative distribution Functions (CDF's) of 12 individual locations are presented and classified based on location. Representative CDF's from each of these three types of terrain are summarized. These results are discussed, and the fade depths exceeded 10 percent of the time in three types of environments are tabulated. The spread spectrum fade statistics for tree-lined roads are compared with the Empirical Roadside Shadowing Model.

Modeling Study of the Geospace System Response to the Solar Wind Dynamic Pressure Enhancement on 17 March 2015

NASA Astrophysics Data System (ADS)

Ozturk, D. S.; Zou, S.; Ridley, A. J.; Slavin, J. A.

2018-04-01

The global magnetosphere-ionosphere-thermosphere system is intrinsically coupled and susceptible to external drivers such as solar wind dynamic pressure enhancements. In order to understand the large-scale dynamic processes in the magnetosphere-ionosphere-thermosphere system due to the compression from the solar wind, the 17 March 2015 sudden commencement was studied in detail using global numerical models. This storm was one of the most geoeffective events of the solar cycle 24 with a minimum Dst of -222 nT. The Wind spacecraft recorded a 10-nPa increment in the solar wind dynamic pressure, while the interplanetary magnetic field BZ became further northward. The University of Michigan Block-Adaptive-Tree Solar wind Roe-type Upwind Scheme global magnetohydrodynamic code was utilized to study the generation and propagation of perturbations associated with the compression of the magnetosphere system. In addition, the high-resolution electric potential and auroral power output from the magnetohydrodynamic model was used to drive the global ionosphere-thermosphere model to investigate the ionosphere-thermosphere system response to pressure enhancement. During the compression, the electric potentials and convection patterns in the polar ionosphere were significantly altered when the preliminary impulse and main impulse field-aligned currents moved from dayside to nightside. As a result of enhanced frictional heating, plasma and neutral temperatures increased at the locations where the flow speeds were enhanced, whereas the electron density dropped at these locations. In particular, the region between the preliminary impulse and main impulse field-aligned currents experienced the most significant heating with 1000-K ion temperature increase and 20-K neutral temperature increase within 2 min. Comparison of the simulation results with the Poker Flat Incoherent Scatter Radar observations showed reasonable agreements despite underestimated magnitudes.

A wind tunnel study on the effect of trees on PM2.5 distribution around buildings.

PubMed

Ji, Wenjing; Zhao, Bin

2018-03-15

Vegetation, especially trees, is effective in reducing the concentration of particulate matter. Trees can efficiently capture particles, improve urban air quality, and may further decrease the introduction of outdoor particles to indoor air. The objective of this study is to investigate the effects of trees on particle distribution and removal around buildings using wind tunnel experiments. The wind tunnel is 18m long, 12m wide, and 3.5m high. Trees were modeled using real cypress branches to mimic trees planted around buildings. At the inlet of the wind tunnel, a "line source" of particles was released, simulating air laden with particulate matter. Experiments with the cypress tree and tree-free models were conducted to compare particle concentrations around the buildings. The results indicate that cypress trees clearly reduce PM 2.5 concentrations compared with the tree-free model. The cypress trees enhanced the PM 2.5 removal rate by about 20%. The effects of trees on PM 2.5 removal and distribution vary at different heights. At the base of the trees, their effect on reducing PM 2.5 concentrations is the most significant. At a great height above the treetops, the effect is almost negligible. Copyright © 2017 Elsevier B.V. All rights reserved.

How Does Tree Density Affect Water Loss of Peatlands? A Mesocosm Experiment

PubMed Central

Limpens, Juul; Holmgren, Milena; Jacobs, Cor M. J.; Van der Zee, Sjoerd E. A. T. M.; Karofeld, Edgar; Berendse, Frank

2014-01-01

Raised bogs have accumulated more atmospheric carbon than any other terrestrial ecosystem on Earth. Climate-induced expansion of trees and shrubs may turn these ecosystems from net carbon sinks into sources when associated with reduced water tables. Increasing water loss through tree evapotranspiration could potentially deepen water tables, thus stimulating peat decomposition and carbon release. Bridging the gap between modelling and field studies, we conducted a three-year mesocosm experiment subjecting natural bog vegetation to three birch tree densities, and studied the changes in subsurface temperature, water balance components, leaf area index and vegetation composition. We found the deepest water table in mesocosms with low tree density. Mesocosms with high tree density remained wettest (i.e. highest water tables) whereas the control treatment without trees had intermediate water tables. These differences are attributed mostly to differences in evapotranspiration. Although our mesocosm results cannot be directly scaled up to ecosystem level, the systematic effect of tree density suggests that as bogs become colonized by trees, the effect of trees on ecosystem water loss changes with time, with tree transpiration effects of drying becoming increasingly offset by shading effects during the later phases of tree encroachment. These density-dependent effects of trees on water loss have important implications for the structure and functioning of peatbogs. PMID:24632565

The Potential of GIS as a Management Tool for Avenue Trees Population in Small Communities; a Case Study of Idi-Shin Community, Ibadan, Nigeria

NASA Astrophysics Data System (ADS)

Olokeogun, O. S.; Akintola, O. O.; Abodunrin, E. K.

2016-06-01

This study demonstrates the potentials of Geographic Information System (GIS) as a management tool for avenue trees (Street trees) populations in small communities (using Idi-Ishin community, Ibadan, Nigeria as a case study). GIS is a decision support system which integrate data or set of data from different sources, bringing them under the same referencing system in a computer system. An Ikonos Imagery (1m Spatial Resolution) of the study area was digitized to produce a digital map using ArcGIS 10.1 version. The avenue trees species ≥ 5cm diameter at breast height (DBH) was selected for enumeration. These trees were then measured and tagged. The Height, Girth and Geographic location (X &Y coordinate) of the trees were measured with Haga altimeter, Girthing tape and Hand held Global Positioning System (GPS) respectively. The species and families of the trees enumerated were also identified. Data were analysed for basal area (BA) and volume (V). A total number of 43 avenue trees were assessed in Idi-Ishin Community. Roystonea regia accounted for the majority of the avenue trees (25.58%), followed by Polyanthia longiflora (23.26%), Gliricida seprium (20.93%), Eucalyptus toreliana (13.95%), Delunix regea (6.98%). However Terminalia catapa, Terminalia radii, Azadrachita indica and Newbodia levis had the same abundance of 2.33%. It was also observed that the benefits derived from these avenue trees includes; Carbon sequestration, Beautification, Wind break and shade. A spatial relational database was created for the assessed avenue trees using ArcCatalog of ArcGIS 10.1 version. Based on the findings from the study (which serves as baseline information for the management of the avenue trees in the study area), it was therefore recommended that subsequent assessment should be carried out at 3-5 year interval in other to ensure proper and continuous monitoring and updating of the data.

[Analysis of the molecular characteristics and cloning of full-length coding sequence of interleukin-2 in tree shrews].

PubMed

Huang, Xiao-Yan; Li, Ming-Li; Xu, Juan; Gao, Yue-Dong; Wang, Wen-Guang; Yin, An-Guo; Li, Xiao-Fei; Sun, Xiao-Mei; Xia, Xue-Shan; Dai, Jie-Jie

2013-04-01

While the tree shrew (Tupaia belangeri chinensis) is an excellent animal model for studying the mechanisms of human diseases, but few studies examine interleukin-2 (IL-2), an important immune factor in disease model evaluation. In this study, a 465 bp of the full-length IL-2 cDNA encoding sequence was cloned from the RNA of tree shrew spleen lymphocytes, which were then cultivated and stimulated with ConA (concanavalin). Clustal W 2.0 was used to compare and analyze the sequence and molecular characteristics, and establish the similarity of the overall structure of IL-2 between tree shrews and other mammals. The homology of the IL-2 nucleotide sequence between tree shrews and humans was 93%, and the amino acid homology was 80%. The phylogenetic tree results, derived through the Neighbour-Joining method using MEGA5.0, indicated a close genetic relationship between tree shrews, Homo sapiens, and Macaca mulatta. The three-dimensional structure analysis showed that the surface charges in most regions of tree shrew IL-2 were similar to between tree shrews and humans; however, the N-glycosylation sites and local structures were different, which may affect antibody binding. These results provide a fundamental basis for the future study of IL-2 monoclonal antibody in tree shrews, thereby improving their utility as a model.

Development and evaluation of height diameter at breast models for native Chinese Metasequoia.

PubMed

Liu, Mu; Feng, Zhongke; Zhang, Zhixiang; Ma, Chenghui; Wang, Mingming; Lian, Bo-Ling; Sun, Renjie; Zhang, Li

2017-01-01

Accurate tree height and diameter at breast height (dbh) are important input variables for growth and yield models. A total of 5503 Chinese Metasequoia trees were used in this study. We studied 53 fitted models, of which 7 were linear models and 46 were non-linear models. These models were divided into two groups of single models and multivariate models according to the number of independent variables. The results show that the allometry equation of tree height which has diameter at breast height as independent variable can better reflect the change of tree height; in addition the prediction accuracy of the multivariate composite models is higher than that of the single variable models. Although tree age is not the most important variable in the study of the relationship between tree height and dbh, the consideration of tree age when choosing models and parameters in model selection can make the prediction of tree height more accurate. The amount of data is also an important parameter what can improve the reliability of models. Other variables such as tree height, main dbh and altitude, etc can also affect models. In this study, the method of developing the recommended models for predicting the tree height of native Metasequoias aged 50-485 years is statistically reliable and can be used for reference in predicting the growth and production of mature native Metasequoia.

Development and evaluation of height diameter at breast models for native Chinese Metasequoia

PubMed Central

Feng, Zhongke; Zhang, Zhixiang; Ma, Chenghui; Wang, Mingming; Lian, Bo-ling; Sun, Renjie; Zhang, Li

2017-01-01

Accurate tree height and diameter at breast height (dbh) are important input variables for growth and yield models. A total of 5503 Chinese Metasequoia trees were used in this study. We studied 53 fitted models, of which 7 were linear models and 46 were non-linear models. These models were divided into two groups of single models and multivariate models according to the number of independent variables. The results show that the allometry equation of tree height which has diameter at breast height as independent variable can better reflect the change of tree height; in addition the prediction accuracy of the multivariate composite models is higher than that of the single variable models. Although tree age is not the most important variable in the study of the relationship between tree height and dbh, the consideration of tree age when choosing models and parameters in model selection can make the prediction of tree height more accurate. The amount of data is also an important parameter what can improve the reliability of models. Other variables such as tree height, main dbh and altitude, etc can also affect models. In this study, the method of developing the recommended models for predicting the tree height of native Metasequoias aged 50–485 years is statistically reliable and can be used for reference in predicting the growth and production of mature native Metasequoia. PMID:28817600

Benefit-based tree valuation

Treesearch

E.G. McPherson

2007-01-01

Benefit-based tree valuation provides alternative estimates of the fair and reasonable value of trees while illustrating the relative contribution of different benefit types. This study compared estimates of tree value obtained using cost- and benefit-based approaches. The cost-based approach used the Council of Landscape and Tree Appraisers trunk formula method, and...

Urban tree growth modeling

Treesearch

E. Gregory McPherson; Paula J. Peper

2012-01-01

This paper describes three long-term tree growth studies conducted to evaluate tree performance because repeated measurements of the same trees produce critical data for growth model calibration and validation. Several empirical and process-based approaches to modeling tree growth are reviewed. Modeling is more advanced in the fields of forestry and...

Monitoring individual tree-based change with airborne lidar.

PubMed

Duncanson, Laura; Dubayah, Ralph

2018-05-01

Understanding the carbon flux of forests is critical for constraining the global carbon cycle and managing forests to mitigate climate change. Monitoring forest growth and mortality rates is critical to this effort, but has been limited in the past, with estimates relying primarily on field surveys. Advances in remote sensing enable the potential to monitor tree growth and mortality across landscapes. This work presents an approach to measure tree growth and loss using multidate lidar campaigns in a high-biomass forest in California, USA. Individual tree crowns were delineated in 2008 and again in 2013 using a 3D crown segmentation algorithm, with derived heights and crown radii extracted and used to estimate individual tree aboveground biomass. Tree growth, loss, and aboveground biomass were analyzed with respect to tree height and crown radius. Both tree growth and loss rates decrease with increasing tree height, following the expectation that trees slow in growth rate as they age. Additionally, our aboveground biomass analysis suggests that, while the system is a net source of aboveground carbon, these carbon dynamics are governed by size class with the largest sources coming from the loss of a relatively small number of large individuals. This study demonstrates that monitoring individual tree-based growth and loss can be conducted with multidate airborne lidar, but these methods remain relatively immature. Disparities between lidar acquisitions were particularly difficult to overcome and decreased the sample of trees analyzed for growth rate in this study to 21% of the full number of delineated crowns. However, this study illuminates the potential of airborne remote sensing for ecologically meaningful forest monitoring at an individual tree level. As methods continue to improve, airborne multidate lidar will enable a richer understanding of the drivers of tree growth, loss, and aboveground carbon flux.

Remnant trees affect species composition but not structure of tropical second-growth forest.

PubMed

Sandor, Manette E; Chazdon, Robin L

2014-01-01

Remnant trees, spared from cutting when tropical forests are cleared for agriculture or grazing, act as nuclei of forest regeneration following field abandonment. Previous studies on remnant trees were primarily conducted in active pasture or old fields abandoned in the previous 2-3 years, and focused on structure and species richness of regenerating forest, but not species composition. Our study is among the first to investigate the effects of remnant trees on neighborhood forest structure, biodiversity, and species composition 20 years post-abandonment. We compared the woody vegetation around individual remnant trees to nearby plots without remnant trees in the same second-growth forests ("control plots"). Forest structure beneath remnant trees did not differ significantly from control plots. Species richness and species diversity were significantly higher around remnant trees. The species composition around remnant trees differed significantly from control plots and more closely resembled the species composition of nearby old-growth forest. The proportion of old-growth specialists and generalists around remnant trees was significantly greater than in control plots. Although previous studies show that remnant trees may initially accelerate secondary forest growth, we found no evidence that they locally affect stem density, basal area, and seedling density at later stages of regrowth. Remnant trees do, however, have a clear effect on the species diversity, composition, and ecological groups of the surrounding woody vegetation, even after 20 years of forest regeneration. To accelerate the return of diversity and old-growth forest species into regrowing forest on abandoned land, landowners should be encouraged to retain remnant trees in agricultural or pastoral fields.

Remnant Trees Affect Species Composition but Not Structure of Tropical Second-Growth Forest

PubMed Central

Sandor, Manette E.; Chazdon, Robin L.

2014-01-01

Remnant trees, spared from cutting when tropical forests are cleared for agriculture or grazing, act as nuclei of forest regeneration following field abandonment. Previous studies on remnant trees were primarily conducted in active pasture or old fields abandoned in the previous 2–3 years, and focused on structure and species richness of regenerating forest, but not species composition. Our study is among the first to investigate the effects of remnant trees on neighborhood forest structure, biodiversity, and species composition 20 years post-abandonment. We compared the woody vegetation around individual remnant trees to nearby plots without remnant trees in the same second-growth forests (“control plots”). Forest structure beneath remnant trees did not differ significantly from control plots. Species richness and species diversity were significantly higher around remnant trees. The species composition around remnant trees differed significantly from control plots and more closely resembled the species composition of nearby old-growth forest. The proportion of old-growth specialists and generalists around remnant trees was significantly greater than in control plots. Although previous studies show that remnant trees may initially accelerate secondary forest growth, we found no evidence that they locally affect stem density, basal area, and seedling density at later stages of regrowth. Remnant trees do, however, have a clear effect on the species diversity, composition, and ecological groups of the surrounding woody vegetation, even after 20 years of forest regeneration. To accelerate the return of diversity and old-growth forest species into regrowing forest on abandoned land, landowners should be encouraged to retain remnant trees in agricultural or pastoral fields. PMID:24454700

Treelink: data integration, clustering and visualization of phylogenetic trees.

PubMed

Allende, Christian; Sohn, Erik; Little, Cedric

2015-12-29

Phylogenetic trees are central to a wide range of biological studies. In many of these studies, tree nodes need to be associated with a variety of attributes. For example, in studies concerned with viral relationships, tree nodes are associated with epidemiological information, such as location, age and subtype. Gene trees used in comparative genomics are usually linked with taxonomic information, such as functional annotations and events. A wide variety of tree visualization and annotation tools have been developed in the past, however none of them are intended for an integrative and comparative analysis. Treelink is a platform-independent software for linking datasets and sequence files to phylogenetic trees. The application allows an automated integration of datasets to trees for operations such as classifying a tree based on a field or showing the distribution of selected data attributes in branches and leafs. Genomic and proteonomic sequences can also be linked to the tree and extracted from internal and external nodes. A novel clustering algorithm to simplify trees and display the most divergent clades was also developed, where validation can be achieved using the data integration and classification function. Integrated geographical information allows ancestral character reconstruction for phylogeographic plotting based on parsimony and likelihood algorithms. Our software can successfully integrate phylogenetic trees with different data sources, and perform operations to differentiate and visualize those differences within a tree. File support includes the most popular formats such as newick and csv. Exporting visualizations as images, cluster outputs and genomic sequences is supported. Treelink is available as a web and desktop application at http://www.treelinkapp.com .

Mediterranean savanna system: understanding and modeling of olive orchard.

NASA Astrophysics Data System (ADS)

Brilli, Lorenzo; Moriondo, Marco; Bindi, Marco

2013-04-01

Nowadays most of the studies on C and N exchange were focused on forest ecosystems and crop systems, while only few studies have been focused on so called "savanna systems". They are long-term agro-ecosystems (fruit trees, grapevines and olive trees, etc.) usually characterized by two different layers (ground vegetation and trees). Generally, there is a lack of knowledge about these systems due to their intrinsic structural complexity (different eco-physiological characteristics so as agricultural practices). However, given their long-term carbon storage capacity, these systems can play a fundamental role in terms of global C cycle. Among all of them, the role that olive trees can play in C sequestration should not be neglected, especially in Mediterranean areas where they typify the rural landscape and are widely cultivated (Loumou and Giourga, 2003). It is therefore fundamental modelling the C-fluxes exchanges coming from these systems through a tool able to well reproduce these dynamics in one of the most exposed areas to the risk of climate change (IPCC, 2007). In this work, 2 years of Net CO2 Ecosystem Exchange (NEE) measures from eddy covariance were used to test the biogeochemistry model DayCent. The study was conducted in a rain-fed olive orchard situated in Follonica, South Tuscany, Italy (42 ° 55'N, 10 ° 45'E), in an agricultural area near the coast. The instrumentation for flux measurement was placed 1.9 m above the canopy top (6.5 m from the ground) so that the footprint area, expressed as the area containing 90% of the observed flux, was almost entirely contained within the olive orchard limits (Brilli et al., in press). Ancillary slow sensors have included soil temperature profiles, global radiation, air temperature and humidity, rain gauge. Fluxes of sensible heat, latent heat, momentum and CO2 as well as ancillary data were derived at half-hourly time resolution. Specific soil (texture, current and historical land use and vegetation cover) and vegetation data (biomass partition, C and N content in olive trees branches and roots) were additionally collected to improve the model calibration. Preliminary results showed that olive grove can be an important C sink while agronomic practices and hottest conditions can induce large C losses. DayCent simulations have confirmed that the model properly tuned for the two components can be used to simulate total olive grove NEE. Additional studies should be conducted to assess the possibility of further improving model performances. References Brilli, L., Chiesi, M., Maselli, F., Moriondo, M., Gioli, B., Toscano, P., Zaldei, A., Bindi, M., 2013. Simulation of olive grove Gross Primary Production by the combination of ground and multisensory satellite data. International Journal of Applied Earth Observation and Geoinformation, in press. IPCC, 2007, Climate Change 2007: Synthesis Report. Contribution of Working Groups I, II and III to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change [Core Writing Team, Pachauri, R.K and Reisinger, A. (eds.)]. IPCC, Geneva, Switzerland, 104 pp. Loumou, A., Giourga, C., 2003. Olive groves: The life and identity of the Mediterranean. Agricultural and Human Values 20, 87-95.

Benefits and costs of street trees in Lisbon

Treesearch

A.L. Soares; F.C. Rego; E.G. McPherson; J.R. Simpson; P.J. Peper; Q. Xiao

2011-01-01

It is well known that urban trees produce various types of benefits and costs. The computer tool i-Tree STRATUM helps quantify tree structure and function, as well as the value of some of these tree services in different municipalities. This study describes one of the first applications of STRATUM outside the U.S. Lisbon’s street trees are dominated by Celtis australis...

Properly placed shade trees reduce summertime electricity bills in Sacramento, California

Treesearch

Geoffery H. Donovan; David R. Butry

2009-01-01

The discovery that shade trees can reduce home cooling costs is hardly surprising. Anybody who has sat under a tree on a warm summer day understands the shade benefit of trees. However, quantifying the effect a shade tree has on home energy use and carbon footprint, and identifying the optimal location for a shade tree, is less straightforward. Past studies that have...

Stem-quality changes on young, mixed upland hardwoods after crop-tree release

Treesearch

David L. Sonderman; David L. Sonderman

1987-01-01

Relative change of several types of stem defects was studied over an 8-year period to determine the effects of crop-tree thinning on the development of tree quality. Special interest was given to changes in relative quality associated with defect indicators of crop trees compared to trees in unthinned plots. The relative quality classes of the crop trees went from...

Changes in tree density do not influence epicormic branching of yellow-poplar

Treesearch

H. Clay Smith

1977-01-01

Epicormic branching was studied in a West Virginia yellow-poplar stand thinned to various tree density levels. Study trees in the 55- to 60-year-old second-growth stand were primarily codominant in crown class with 32 to 48 feet of log height. Eight-year study results indicated that yellow-poplar trees in this age class and locale could be thinned without serious loss...

High-Resolution Remote Sensing and Stable Isotope Patterns Across Heath-Shrub-Forest Ecotone at Abisko and Vassijaure, Northern Sweden

NASA Astrophysics Data System (ADS)

Schwan, M. R.; Herrick, C.; Hobbie, E. A.; Chen, J.; Varner, R. K.; Palace, M. W.; Marek, E.; Kashi, N. N.; Smith, S. L.

2015-12-01

Rapid warming in arctic and sub-arctic environments shifts plant community structure which in turn can alter carbon cycling by releasing large stocks of carbon sequestered in arctic soils. Much work has been done in sub-arctic peatlands to understand how shifts in dominant vegetation cover can ultimately affect global carbon balances, but less focus has been given to upland environments where similar changes are occurring. Recent circumpolar expansion of deciduous shrubs and trees in sub-arctic upland environments may alter carbon cycling due to shrubs and trees sequestering less C in soils than the heath plants they typically replace. In this study we explored the relationship between nutrient and carbon cycling and above-ground vegetation on six transects which traverse an ecotone gradient from heath tundra (dominated by ericoid mycorrhizal plants) through deciduous shrubs to deciduous trees (dominated by ectomycorrhizal plants) in upland environments of sub-arctic Sweden near Vassijaure (~850 mm precipitation) and Abisko (~300 mm precipitation). We collected soil and foliage for analysis of natural abundances of stable carbon and nitrogen isotopes (δ13C and δ15N), which can be a sensitive indicator of C and N dynamics. We also took high-resolution remote aerial imagery over the transects to calculate percent cover of vegetation types using GIS software. We concurrently estimated percent cover in smaller plots on the ground of three dominant species, Empetrum nigrum, Betula nana, and Betula pubescens, to serve as ground-truthing for the aerial imagery. Analysis of vegetation cover data shows significant differences in vegetation types along the transects. Preliminary multiple regression analysis of isotopes shows that δ13C in organic soil at the Vassijaure site is mostly controlled by distance along the transect, an interaction term between transect distance and soil depth, and δ15N (adjusted r2 = 0.85, p < 0.0001). Values of δ13C were lower in soils in the shrubs and forest than in the heath. In regression analyses, δ15N was primarily controlled by depth, and secondarily by heath cover (adjusted r2 = 0.68, p < 0.0001). These results suggest that trees and shrubs are sequestering carbon, and interactions between plants and belowground soil communities may be driving nitrogen dynamics.

The Spatial Distribution of Dead Trees across Arkansas Timberlands

Treesearch

Martin A. Spetich; James M. Guldin

1999-01-01

Abstract -- Dead trees are an important part of the forest ecosystem and their attributes have been studied at the stand scale. However, their distribution over a large region has rarely been examined. In this study, the distribution and dynamics of sound wood in dead trees and the ratio of dead to live trees across the Arkansas landscape were...

Demographic analysis of tree colonization in a 20-year-old right-of-way.

PubMed

Mercier, C; Brison, J; Bouchard, A

2001-12-01

Past tree colonization dynamics of a powerline-right-of-way (ROW) corridor in the Haut-Saint-Laurent region of Quebec was studied based on the present age distribution of its tree populations. This colonization study spans 20 years, from 1977 (ROW clearance) to 1996. The sampled quadrats were classified into six vegetation types. Tree colonization dynamics were interpreted in each type, and three distinct patterns were identified. (1) Communities adapted to acidic conditions were heavily colonized by Acer rubrum, at least for the last 12 years. (2) Communities adapted to mesic or to hydric conditions were more intensely colonized in the period 1985-1987 than in the following 9 years; this past success in tree colonization may have been caused by herbicide treatments, which could have facilitated tree establishment by damaging the herbaceous and shrub vegetation. (3) Cattail, vine-raspberry, and reed-dominated communities contained few tree individuals, with almost all trees establishing between 1979 and 1990; those three vegetation types appear as the most resistant to tree invasion in the ROW studied. This study supports the need for an integrated approach in ROW vegetation management, in which the selection of vegetation treatment methods would depend on the tree colonization dynamics in each vegetation type. Minimizing disturbances inflicted on ROW herbaceous and shrub covers should be the central strategy because disturbances jeopardize natural resistance to future tree invasion, except in communities adapted to acidic conditions where the existing vegetation does not prevent invasion by A. rubrum. Many trees are surviving the successive cutting operations by producing new sprouts each time, particularly in communities adapted to mesic and hydric conditions. In these cases, mechanical cutting should be replaced by a one-time stump-killing operation, to avoid repeated and unsuccessful treatments of the same individuals over time.

Accounting for Uncertainty in Gene Tree Estimation: Summary-Coalescent Species Tree Inference in a Challenging Radiation of Australian Lizards.

PubMed

Blom, Mozes P K; Bragg, Jason G; Potter, Sally; Moritz, Craig

2017-05-01

Accurate gene tree inference is an important aspect of species tree estimation in a summary-coalescent framework. Yet, in empirical studies, inferred gene trees differ in accuracy due to stochastic variation in phylogenetic signal between targeted loci. Empiricists should, therefore, examine the consistency of species tree inference, while accounting for the observed heterogeneity in gene tree resolution of phylogenomic data sets. Here, we assess the impact of gene tree estimation error on summary-coalescent species tree inference by screening ${\\sim}2000$ exonic loci based on gene tree resolution prior to phylogenetic inference. We focus on a phylogenetically challenging radiation of Australian lizards (genus Cryptoblepharus, Scincidae) and explore effects on topology and support. We identify a well-supported topology based on all loci and find that a relatively small number of high-resolution gene trees can be sufficient to converge on the same topology. Adding gene trees with decreasing resolution produced a generally consistent topology, and increased confidence for specific bipartitions that were poorly supported when using a small number of informative loci. This corroborates coalescent-based simulation studies that have highlighted the need for a large number of loci to confidently resolve challenging relationships and refutes the notion that low-resolution gene trees introduce phylogenetic noise. Further, our study also highlights the value of quantifying changes in nodal support across locus subsets of increasing size (but decreasing gene tree resolution). Such detailed analyses can reveal anomalous fluctuations in support at some nodes, suggesting the possibility of model violation. By characterizing the heterogeneity in phylogenetic signal among loci, we can account for uncertainty in gene tree estimation and assess its effect on the consistency of the species tree estimate. We suggest that the evaluation of gene tree resolution should be incorporated in the analysis of empirical phylogenomic data sets. This will ultimately increase our confidence in species tree estimation using summary-coalescent methods and enable us to exploit genomic data for phylogenetic inference. [Coalescence; concatenation; Cryptoblepharus; exon capture; gene tree; phylogenomics; species tree.]. © The authors 2016. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For permissions, please e-mail: journals.permission@oup.com.

Omics studies of citrus, grape and rosaceae fruit trees

PubMed Central

Shiratake, Katsuhiro; Suzuki, Mami

2016-01-01

Recent advance of bioinformatics and analytical apparatuses such as next generation DNA sequencer (NGS) and mass spectrometer (MS) has brought a big wave of comprehensive study to biology. Comprehensive study targeting all genes, transcripts (RNAs), proteins, metabolites, hormones, ions or phenotypes is called genomics, transcriptomics, proteomics, metabolomics, hormonomics, ionomics or phenomics, respectively. These omics are powerful approaches to identify key genes for important traits, to clarify events of physiological mechanisms and to reveal unknown metabolic pathways in crops. Recently, the use of omics approach has increased dramatically in fruit tree research. Although the most reported omics studies on fruit trees are transcriptomics, proteomics and metabolomics, and a few is reported on hormonomics and ionomics. In this article, we reviewed recent omics studies of major fruit trees, i.e. citrus, grapevine and rosaceae fruit trees. The effectiveness and prospects of omics in fruit tree research will as well be highlighted. PMID:27069397

Omics studies of citrus, grape and rosaceae fruit trees.

PubMed

Shiratake, Katsuhiro; Suzuki, Mami

2016-01-01

Recent advance of bioinformatics and analytical apparatuses such as next generation DNA sequencer (NGS) and mass spectrometer (MS) has brought a big wave of comprehensive study to biology. Comprehensive study targeting all genes, transcripts (RNAs), proteins, metabolites, hormones, ions or phenotypes is called genomics, transcriptomics, proteomics, metabolomics, hormonomics, ionomics or phenomics, respectively. These omics are powerful approaches to identify key genes for important traits, to clarify events of physiological mechanisms and to reveal unknown metabolic pathways in crops. Recently, the use of omics approach has increased dramatically in fruit tree research. Although the most reported omics studies on fruit trees are transcriptomics, proteomics and metabolomics, and a few is reported on hormonomics and ionomics. In this article, we reviewed recent omics studies of major fruit trees, i.e. citrus, grapevine and rosaceae fruit trees. The effectiveness and prospects of omics in fruit tree research will as well be highlighted.

Metrics for comparing neuronal tree shapes based on persistent homology.

PubMed

Li, Yanjie; Wang, Dingkang; Ascoli, Giorgio A; Mitra, Partha; Wang, Yusu

2017-01-01

As more and more neuroanatomical data are made available through efforts such as NeuroMorpho.Org and FlyCircuit.org, the need to develop computational tools to facilitate automatic knowledge discovery from such large datasets becomes more urgent. One fundamental question is how best to compare neuron structures, for instance to organize and classify large collection of neurons. We aim to develop a flexible yet powerful framework to support comparison and classification of large collection of neuron structures efficiently. Specifically we propose to use a topological persistence-based feature vectorization framework. Existing methods to vectorize a neuron (i.e, convert a neuron to a feature vector so as to support efficient comparison and/or searching) typically rely on statistics or summaries of morphometric information, such as the average or maximum local torque angle or partition asymmetry. These simple summaries have limited power in encoding global tree structures. Based on the concept of topological persistence recently developed in the field of computational topology, we vectorize each neuron structure into a simple yet informative summary. In particular, each type of information of interest can be represented as a descriptor function defined on the neuron tree, which is then mapped to a simple persistence-signature. Our framework can encode both local and global tree structure, as well as other information of interest (electrophysiological or dynamical measures), by considering multiple descriptor functions on the neuron. The resulting persistence-based signature is potentially more informative than simple statistical summaries (such as average/mean/max) of morphometric quantities-Indeed, we show that using a certain descriptor function will give a persistence-based signature containing strictly more information than the classical Sholl analysis. At the same time, our framework retains the efficiency associated with treating neurons as points in a simple Euclidean feature space, which would be important for constructing efficient searching or indexing structures over them. We present preliminary experimental results to demonstrate the effectiveness of our persistence-based neuronal feature vectorization framework.

Metrics for comparing neuronal tree shapes based on persistent homology

PubMed Central

Li, Yanjie; Wang, Dingkang; Ascoli, Giorgio A.; Mitra, Partha

2017-01-01

As more and more neuroanatomical data are made available through efforts such as NeuroMorpho.Org and FlyCircuit.org, the need to develop computational tools to facilitate automatic knowledge discovery from such large datasets becomes more urgent. One fundamental question is how best to compare neuron structures, for instance to organize and classify large collection of neurons. We aim to develop a flexible yet powerful framework to support comparison and classification of large collection of neuron structures efficiently. Specifically we propose to use a topological persistence-based feature vectorization framework. Existing methods to vectorize a neuron (i.e, convert a neuron to a feature vector so as to support efficient comparison and/or searching) typically rely on statistics or summaries of morphometric information, such as the average or maximum local torque angle or partition asymmetry. These simple summaries have limited power in encoding global tree structures. Based on the concept of topological persistence recently developed in the field of computational topology, we vectorize each neuron structure into a simple yet informative summary. In particular, each type of information of interest can be represented as a descriptor function defined on the neuron tree, which is then mapped to a simple persistence-signature. Our framework can encode both local and global tree structure, as well as other information of interest (electrophysiological or dynamical measures), by considering multiple descriptor functions on the neuron. The resulting persistence-based signature is potentially more informative than simple statistical summaries (such as average/mean/max) of morphometric quantities—Indeed, we show that using a certain descriptor function will give a persistence-based signature containing strictly more information than the classical Sholl analysis. At the same time, our framework retains the efficiency associated with treating neurons as points in a simple Euclidean feature space, which would be important for constructing efficient searching or indexing structures over them. We present preliminary experimental results to demonstrate the effectiveness of our persistence-based neuronal feature vectorization framework. PMID:28809960

Ascorbic Acid Alleviates Water Stress in Young Peach Trees and Improves Their Performance after Rewatering.

PubMed

Penella, Consuelo; Calatayud, Ángeles; Melgar, Juan C

2017-01-01

Exogenous application of biochemicals has been found to improve water stress tolerance in herbaceous crops but there are limited studies on deciduous fruit trees. The goal of this research was to study if ascorbic acid applications could improve physiological mechanisms associated with water stress tolerance in young fruit trees. Ascorbic acid was foliarly applied at a concentration of 250 ppm to water-stressed and well-watered peach trees (control) of two cultivars ('Scarletprince' and 'CaroTiger'). Trees received either one or two applications, and 1 week after the second application all trees were rewatered to field capacity. Upon rewatering, CO 2 assimilation and stomatal conductance of water-stressed 'Scarletprince' trees sprayed with ascorbic acid (one or two applications) were similar to those of well-irrigated trees, but water-stressed trees that had not received ascorbic acid did not recover photosynthetical functions. Also, water status in sprayed water-stressed 'Scarletprince' trees was improved to values similar to control trees. On the other hand, water-stressed 'CaroTiger' trees needed two applications of ascorbic acid to reach values of CO 2 assimilation similar to control trees but these applications did not improve their water status. In general terms, different response mechanisms to cope with water stress in presence of ascorbic acid were found in each cultivar, with 'Scarletprince' trees preferentially using proline as compatible solute and 'CaroTiger' trees relying on stomatal regulation. The application of ascorbic acid reduced cell membrane damage and increased catalase activity in water-stressed trees of both cultivars. These results suggest that foliar applications of ascorbic acid could be used as a management practice for improving water stress tolerance of young trees under suboptimal water regimes.

Ascorbic Acid Alleviates Water Stress in Young Peach Trees and Improves Their Performance after Rewatering

PubMed Central

Penella, Consuelo; Calatayud, Ángeles; Melgar, Juan C.

2017-01-01

Exogenous application of biochemicals has been found to improve water stress tolerance in herbaceous crops but there are limited studies on deciduous fruit trees. The goal of this research was to study if ascorbic acid applications could improve physiological mechanisms associated with water stress tolerance in young fruit trees. Ascorbic acid was foliarly applied at a concentration of 250 ppm to water-stressed and well-watered peach trees (control) of two cultivars (‘Scarletprince’ and ‘CaroTiger’). Trees received either one or two applications, and 1 week after the second application all trees were rewatered to field capacity. Upon rewatering, CO2 assimilation and stomatal conductance of water-stressed ‘Scarletprince’ trees sprayed with ascorbic acid (one or two applications) were similar to those of well-irrigated trees, but water-stressed trees that had not received ascorbic acid did not recover photosynthetical functions. Also, water status in sprayed water-stressed ‘Scarletprince’ trees was improved to values similar to control trees. On the other hand, water-stressed ‘CaroTiger’ trees needed two applications of ascorbic acid to reach values of CO2 assimilation similar to control trees but these applications did not improve their water status. In general terms, different response mechanisms to cope with water stress in presence of ascorbic acid were found in each cultivar, with ‘Scarletprince’ trees preferentially using proline as compatible solute and ‘CaroTiger’ trees relying on stomatal regulation. The application of ascorbic acid reduced cell membrane damage and increased catalase activity in water-stressed trees of both cultivars. These results suggest that foliar applications of ascorbic acid could be used as a management practice for improving water stress tolerance of young trees under suboptimal water regimes. PMID:28979284

Analysis of Wave Velocity Patterns in Black Cherry Trees and its Effect on Internal Decay Detection

Treesearch

Guanghui Li; Xiping Wang; Jan Wiedenbeck; Robert J. Ross

2013-01-01

In this study, we examined stress wave velocity patterns in the cross sections of black cherry trees, developed analytical models of stress wave velocity in sound healthy trees, and then tested the effectiveness of the models as a tool for tree decay diagnosis. Acoustic tomography data of the tree cross sections were collected from 12 black cherry trees at a production...

Analysis of wave velocity patterns in black cherry trees and its effect on internal decay detection

Treesearch

Guanghui Li; Xiping Wang; Hailin Feng; Jan Wiedenbeck; Robert J. Ross

2014-01-01

In this study, we examined stress wave velocity patterns in the cross sections of black cherry trees, developed analytical models of stress wave velocity in sound healthy trees, and then tested the effectiveness of the models as a tool for tree decay diagnosis. Acoustic tomography data of the tree cross sections were collected from 12 black cherry trees at a production...

Utility of tree crown condition indicators to predict tree survival using remeasured Forest Inventory and Analysis data

Treesearch

Randall S. Morin; Jim Steinman; KaDonna C. Randolph

2012-01-01

The condition of tree crowns is an important indicator of tree and forest health. Crown conditions have been evaluated during surveys of Forest Inventory and Analysis (FIA) Phase 3 (P3) plots since 1999. In this study, remeasured data from 39,357 trees in the northern United States were used to assess the probability of survival among various tree species using the...

Snohomish Estuary Wetlands Study. Volume II. Basic Information and Evaluation

DTIC Science & Technology

1978-08-01

vegetation in these areas is of thrre major types : Coniferous trees , broadleaf deciluous trpee., ana shrubs. The coniferous trees are predominantly Sitka...in coniferous trees and also rest there when not hunting. The swamp habitat type is highly productive, generating abundant detr~i- tus. However, since...areas is of three major types : Coniferous trees , broadleaf deciduous trees , and shrubs. The coni- ferous trees are Sitka Spruce (Picea sitchensis

Impacts of a water stress followed by an early frost event on beech (Fagus sylvatica L.) susceptibility to Scolytine ambrosia beetles - Research strategy and first results

NASA Astrophysics Data System (ADS)

La Spina, Sylvie; de Cannière, Charles; Molenberg, Jean-Marc; Vincke, Caroline; Deman, Déborah; Grégoire, Jean-Claude

2010-05-01

Climate change tends to induce more frequent abiotic and biotic extreme events, having large impacts on tree vitality. Weakened trees are then more susceptible to secondary insect outbreaks, as it happened in Belgium in the early 2000s: after an early frost event, secondary Scolytine ambrosia beetles attacks were observed on beech trees. In this study, we test if a combination of stress, i.e. a soil water deficit preceding an early frost, could render trees more attractive to beetles. An experimental study was set in autumn 2008. Two parcels of a beech forest were covered with plastic tents to induce a water stress by rain interception. The parcels were surrounded by 2-meters depth trenches to avoid water supply by streaming. Soil water content and different indicators of tree water use (sap flow, predawn leaf water potential, tree radial growth) were followed. In autumn 2010, artificial frost injuries will be inflicted to trees using dry ice. Trees attractivity for Scolytine insects, and the success of insect colonization will then be studied. The poster will focus on experiment setting and first results (impacts of soil water deficit on trees).

Autumn Algorithm-Computation of Hybridization Networks for Realistic Phylogenetic Trees.

PubMed

Huson, Daniel H; Linz, Simone

2018-01-01

A minimum hybridization network is a rooted phylogenetic network that displays two given rooted phylogenetic trees using a minimum number of reticulations. Previous mathematical work on their calculation has usually assumed the input trees to be bifurcating, correctly rooted, or that they both contain the same taxa. These assumptions do not hold in biological studies and "realistic" trees have multifurcations, are difficult to root, and rarely contain the same taxa. We present a new algorithm for computing minimum hybridization networks for a given pair of "realistic" rooted phylogenetic trees. We also describe how the algorithm might be used to improve the rooting of the input trees. We introduce the concept of "autumn trees", a nice framework for the formulation of algorithms based on the mathematics of "maximum acyclic agreement forests". While the main computational problem is hard, the run-time depends mainly on how different the given input trees are. In biological studies, where the trees are reasonably similar, our parallel implementation performs well in practice. The algorithm is available in our open source program Dendroscope 3, providing a platform for biologists to explore rooted phylogenetic networks. We demonstrate the utility of the algorithm using several previously studied data sets.

Cavity trees, snags, and selection cutting: a northern hardwood case study

Treesearch

Laura S. Kenefic; Ralph D. Nyland

2007-01-01

Although traditional application of the selection system includes a focus on high-value trees that may reduce cavities and snags, few studies have quantified those habitat features in managed uneven-aged stands. We examined the effects of single-tree selection cutting on cavity trees and snags in a northern hardwood stand immediately prior to the second cutting....

Tree species migration studies in the White Mountains of New Hampshire

Treesearch

William B. Leak; Mariko Yamasaki

2012-01-01

The movement of tree species in either latitude or elevation has attracted increased recent attention due to growing national/international concerns over climate change. However, studies on tree species movements began in the early 1970s in the White Mountains of New Hampshire, mostly due to ecological interests in the episodic behavior of upper-elevation tree species...

The Tree Theme Method in psychosocial occupational therapy: a case study.

PubMed

Gunnarsson, A Birgitta; Jansson, Jan-Ake; Eklund, Mona

2006-12-01

This study aimed to describe the Tree Theme Method (TTM) as a method for intervention in psychosocial occupational therapy. The TTM is based on theories concerning creative activities and occupational storytelling and story making. In order to exemplify the method a case study of a treatment process with follow up was undertaken. The participant was a female client suffering from anxiety and depression. During an interview the client painted symbolic trees on five different occasions with specific variations of the tree theme: a tree symbolizing her present life, her childhood, adolescence, adulthood, and, finally, a tree representing her future. The trees were used as starting points for the client to tell her life story. The intention was that she would find new strategies for how to change her daily life. Three years later there was a follow up stage where the client painted new trees and told her story. Some life themes were identified. The TTM appears suitable for intervention in psychosocial occupational therapy. In future studies the TTM should be subjected to evaluation research based on several clients in order to develop a deeper understanding of the process and what kind of results changes in the TTM intervention may provide.

Calibration of the stable oxygen and carbon isotope signals of stone pine (Pinus cembra L.) tree rings at the Eastern Carpathian timberline

NASA Astrophysics Data System (ADS)

Kern, Zoltán; Popa, Ionel; Semeniuc, Anca; Schöll-Barna, Gabriella; Perşoiu, Aurel

2014-05-01

Swiss stone pine (Pinus cembra L.) presented the greatest dendroclimatological potential in the Eastern Carpathians owing to the i) significant longevity, ii) strictly constrained ecological preference and the related pronounced temperature regulated growth and iii) well-preserved snag and subfossil findings. Dendroisotope signals, however, were not tested for the species. Increment cores were extracted from three individuals at a timberline site located in the Calimani Mts, Romania. Annual rings were cut with a scalpel under a binocular microscope from each core and each year. Annual increments were treated separately (i.e. non-pooled) to monitor between tree variability and estimate real uncertainty. Extracted α-cellulose was homogenized by ultrasound and converted to CO at high-temperature and the stable oxygen (18O/16O) and carbon (13C/12C) ratios were measured and expressed relative to standards in the conventional delta notation. Both isotopes presented strong intra-tree correlation, therefore the stand average was estimated from the measurements. Carbon isotope record performed the characteristic decline throughout the recent decades; therefore this non-climatic trend was corrected before climate calibration. Mean δ18O yielded significant positive connection (r>0.5) with temperature of the summer months for the last century. Spatial signature obtained from a preliminary correlation field analysis suggests that Stone pine δ18O from the Calimani Mts will give relevant temperature record for the historical times not only for the Eastern Carpathians but also much southward directions as far as the Central Balkan. Acknowledgement: RO-2013-0014 and LP2012-27/2012.

Evaluating Uncertainties in Sap Flux Scaled Estimates of Forest Transpiration, Canopy Conductance and Photosynthesis

NASA Astrophysics Data System (ADS)

Ward, E. J.; Bell, D. M.; Clark, J. S.; Kim, H.; Oren, R.

2009-12-01

Thermal dissipation probes (TDPs) are a common method for estimating forest transpiration and canopy conductance from sap flux rates in trees, but their implementation is plagued by uncertainties arising from missing data and variability in the diameter and canopy position of trees, as well as sapwood conductivity within individual trees. Uncertainties in estimates of canopy conductance also translate into uncertainties in carbon assimilation in models such as the Canopy Conductance Constrained Carbon Assimilation (4CA) model that combine physiological and environmental data to estimate photosynthetic rates. We developed a method to propagate these uncertainties in the scaling and imputation of TDP data to estimates of canopy transpiration and conductance using a state-space Jarvis-type conductance model in a hierarchical Bayesian framework. This presentation will focus on the impact of these uncertainties on estimates of water and carbon fluxes using 4CA and data from the Duke Free Air Carbon Enrichment (FACE) project, which incorporates both elevated carbon dioxide and soil nitrogen treatments. We will also address the response of canopy conductance to vapor pressure deficit, incident radiation and soil moisture, as well as the effect of treatment-related stand structure differences in scaling TDP measurements. Preliminary results indicate that in 2006, a year of normal precipitation (1127 mm), canopy transpiration increased in elevated carbon dioxide ~8% on a ground area basis. In 2007, a year with a pronounced drought (800 mm precipitation), this increase was only present in the combined carbon dioxide and fertilization treatment. The seasonal dynamics of water and carbon fluxes will be discussed in detail.

Postfire Forest Recovery in California's National Forests

NASA Astrophysics Data System (ADS)

Welch, K.; Young, T.; Safford, H.

2012-12-01

Due to fire suppression policies and other management practices over the last century, many low- to mid-elevation forest types in the Sierra Nevada have accumulated high fuel loads that promote stand-replacing high-intensity fires. Current and future projected trends in climate are predicted to increase the occurrence of such fires. We established over 1,000 plots in a range of elevations, environments, forest types, climate zones and fire severity classes to provide insight into the factors that promote natural tree regeneration after wildfires, the limiting factors in species establishment, and the differences in post-fire responses of conifers and hardwoods. We employed a standardized protocol that measured site characteristics, seedling densities, and woody plant growth. Preliminary results reveal that fire severity generally has a unimodal relationship with rates of natural regeneration, although effects of site and local environment act to modulate the shape of the relationship. Above low to moderate severities, natural regeneration rates of all tree species decrease with increasing severity, possibly due to a combination of factors including seed mortality, increasing distance to the nearest living seed tree, and more severe microclimatic conditions. Though hardwoods (oaks) are able to both seed and resprout from top-killed root crowns in a postfire environment, conifers still have the numerical advantage over hardwoods through seeding alone. We did not find evidence that shrubs have a strong either facilitative or competitive effect on conifer seedling establishment or growth in the first five years of forest recovery. Understanding forest recovery and regeneration processes after high severity fires is critical to appropriately applying management strategies on National Forest lands.

Depth of soil water uptake by tropical rainforest trees during dry periods: does tree dimension matter?

PubMed

Stahl, Clément; Hérault, Bruno; Rossi, Vivien; Burban, Benoit; Bréchet, Claude; Bonal, Damien

2013-12-01

Though the root biomass of tropical rainforest trees is concentrated in the upper soil layers, soil water uptake by deep roots has been shown to contribute to tree transpiration. A precise evaluation of the relationship between tree dimensions and depth of water uptake would be useful in tree-based modelling approaches designed to anticipate the response of tropical rainforest ecosystems to future changes in environmental conditions. We used an innovative dual-isotope labelling approach (deuterium in surface soil and oxygen at 120-cm depth) coupled with a modelling approach to investigate the role of tree dimensions in soil water uptake in a tropical rainforest exposed to seasonal drought. We studied 65 trees of varying diameter and height and with a wide range of predawn leaf water potential (Ψpd) values. We confirmed that about half of the studied trees relied on soil water below 100-cm depth during dry periods. Ψpd was negatively correlated with depth of water extraction and can be taken as a rough proxy of this depth. Some trees showed considerable plasticity in their depth of water uptake, exhibiting an efficient adaptive strategy for water and nutrient resource acquisition. We did not find a strong relationship between tree dimensions and depth of water uptake. While tall trees preferentially extract water from layers below 100-cm depth, shorter trees show broad variations in mean depth of water uptake. This precludes the use of tree dimensions to parameterize functional models.

Whole-tree distribution and temporal variation of non-structural carbohydrates in broadleaf evergreen trees.

PubMed

Smith, Merryn G; Miller, Rebecca E; Arndt, Stefan K; Kasel, Sabine; Bennett, Lauren T

2018-04-01

Non-structural carbohydrates (NSCs) form a fundamental yet poorly quantified carbon pool in trees. Studies of NSC seasonality in forest trees have seldom measured whole-tree NSC stocks and allocation among organs, and are not representative of all tree functional types. Non-structural carbohydrate research has primarily focussed on broadleaf deciduous and coniferous evergreen trees with distinct growing seasons, while broadleaf evergreen trees remain under-studied despite their different growth phenology. We measured whole-tree NSC allocation and temporal variation in Eucalyptus obliqua L'Hér., a broadleaf evergreen tree species typically occurring in mixed-age temperate forests, which has year-round growth and the capacity to resprout after fire. Our overarching objective was to improve the empirical basis for understanding the functional importance of NSC allocation and stock changes at the tree- and organ-level in this tree functional type. Starch was the principal storage carbohydrate and was primarily stored in the stem and roots of young (14-year-old) trees rather than the lignotuber, which did not appear to be a specialized starch storage organ. Whole-tree NSC stocks were depleted during spring and summer due to significant decreases in starch mass in the roots and stem, seemingly to support root and crown growth but potentially exacerbated by water stress in summer. Seasonality of stem NSCs differed between young and mature trees, and was not synchronized with stem basal area increments in mature trees. Our results suggest that the relative magnitude of seasonal NSC stock changes could vary with tree growth stage, and that the main drivers of NSC fluctuations in broadleaf evergreen trees in temperate biomes could be periodic disturbances such as summer drought and fire, rather than growth phenology. These results have implications for understanding post-fire tree recovery via resprouting, and for incorporating NSC pools into carbon models of mixed-age forests.

Interspecific variation in growth responses to tree size, competition and climate of western Canadian boreal mixed forests.

PubMed

Jiang, Xinyu; Huang, Jian-Guo; Cheng, Jiong; Dawson, Andria; Stadt, Kenneth J; Comeau, Philip G; Chen, Han Y H

2018-08-01

Tree growth of boreal forest plays an important role on global carbon (C) cycle, while tree growth in the western Canadian boreal mixed forests has been predicted to be negatively affected by regional drought. Individual tree growth can be controlled by many factors, such as competition, climate, tree size and age. However, information about contributions of different factors to tree growth is still limited in this region. In order to address this uncertainty, tree rings of two dominant tree species, trembling aspen (Populus tremuloides Michx.) and white spruce (Picea glauca (Moench.) Voss), were sampled from boreal mixed forest stands distributed across Alberta, Canada. Tree growth rates over different time intervals (10years interval, 1998-2007; 20years interval, 1988-2007; 30years interval, 1978-2007) were calculated to study the effects of different factors (tree size, competition, climate, and age) on tree growth. Results indicated that tree growth of two species were both primarily affected by competition or tree size, while climatic indices showed less effects on tree growth. Growth of trembling aspen was significantly affected by inter- and intraspecific competition, while growth of white spruce was primarily influenced by tree size, followed by competition. Positive relationship was found between growth of white spruce and competition index of coniferous group, suggesting an intraspecific mutualism mechanism within coniferous group. Our results further suggested that competition driven succession was the primary process of forest composition shift in the western Canadian boreal mixed forest. Although drought stress increased tree mortality, decline of stem density under climate change released competition stress of surviving trees, which in turn sustained growth of surviving trees. Therefore, climatic indices showed fewer effects on growth of dominant tree species compared to other factors in our study. Copyright © 2018 Elsevier B.V. All rights reserved.

Long-term growth decline in Toona ciliata in a moist tropical forest in Bangladesh: Impact of global warming

NASA Astrophysics Data System (ADS)

Rahman, Mizanur; Islam, Rofiqul; Islam, Mahmuda

2017-04-01

Tropical forests are carbon rich ecosystems and small changes in tropical forest tree growth substantially influence the global carbon cycle. Forest monitoring studies report inconsistent growth changes in tropical forest trees over the past decades. Most of the studies highlighted changes in the forest level carbon gain, neglecting the species-specific growth changes which ultimately determine community-level responses. Tree-ring analysis can provide historical data on species-specific tree growth with annual resolution. Such studies are inadequate in Bangladesh, which is one of the most climate sensitive regions in the tropics. In this study, we investigated long-term growth rates of Toona ciliata in a moist tropical forest of Bangladesh by using tree-ring analysis. We sampled 50 trees of varying size, obtained increment cores from these trees and measured tree-ring width. Analyses of growth patterns revealed size-dependent growth increments. After correcting for the effect of tree size on tree growth (ontogenetic changes) by two different methods we found declining growth rates in T. ciliata from 1960 to 2013. Standardized ring-width index (RWI) was strongly negatively correlated with annual mean and maximum temperatures suggesting that rising temperature might cause the observed growth decline in T. ciliata. Assuming that global temperatures will rise at the current rate, the observed growth decline is assumed to continue. The analysis of stable carbon and oxygen isotopes may reveal more insight on the physiological response of this species to future climatic changes.

CosmoBon for studying wood formation under exotic gravitational environment for future space agriculture

NASA Astrophysics Data System (ADS)

Tomita-Yokotani, Kaori; Baba, Keiichi; Suzuki, Toshisada; Funada, Ryo; Nakamura, Teruko; Hashimoto, Hirofumi; Yamashita, Masamichi; Cosmobon, Jstwg

We are proposing to raise woody plants in space for several applications and plant science. Japanese flowering cherry tree is one of a candidate for these studies. Mechanism behind sensing gravity and controlling shape of tree has been studied quite extensively. Even molecular mechanism for the response of plant against gravity has been investigated quite intensively for various species, woody plants are left behind. Morphology of woody branch growth is different from that of stem growth in herbs. Morphology in tree is strongly dominated by the secondary xylem formation. Nobody knows the tree shape grown under the space environment. If whole tree could be brought up to space as research materials, it might provide important scientific knowledge. Furthermore, trees produce excess oxygen, wooden materials for living cabin, and provide biomass for cultivating mushroom and insect as for the space agriculture. Excellent tree shapes which would be deeply related to wood formation improve quality of life under stressful environment in outer space. The serious problem would be their size. Bonsai is one of the Japanese traditional arts. We can study secondly xylem formation, wood formation, under exotic gravitational environment using Bonsai. "CosmoBon" is the small tree Bonsai for our space experiment. It has been recognized that the reaction wood in CosmoBon is formed similar to natural trees. Our goal is to examine feasibility to grow various species of trees in space as bioresource for space agriculture.

Positive versus negative environmental impacts of tree encroachment in South Africa

NASA Astrophysics Data System (ADS)

Grellier, Séraphine; Ward, David; Janeau, Jean-Louis; Podwojewski, Pascal; Lorentz, Simon; Abbadie, Luc; Valentin, Christian; Barot, Sébastien

2013-11-01

Woody plant encroachment in grasslands is a worldwide phenomenon. Despite many studies, the consequences of woody plant encroachment on sub-canopy vegetation and soil properties are still unclear. To better understand the impacts of trees on grassland properties we examined the following questions using a mountainous sub-tropical grassland of South Africa encroached by an indigenous tree, Acacia sieberiana as a case study: (1) Do trees increase sub-canopy herbaceous diversity, quality and biomass and soil nitrogen content? (2) Do large trees have a stronger effect than medium-sized trees on grass and soil properties? (3) Does the impact of trees change with the presence of livestock and position of trees in a catena? We studied grass and non-graminoid species diversity and biomass, grass quality and soil properties during the wet season of 2009. Nitrogen in grass leaves, soil cation exchange capacity and calcium and magnesium ion concentrations in the soil increased under tall Acacia versus open areas. Medium-sized Acacia decreased the gross energy content, digestibility and neutral detergent fibre of grasses but increased the species richness of non-graminoids. Tall and medium Acacia trees were associated with the presence of Senecio inaequidens, an indigenous species that is toxic to horses and cattle. The presence of livestock resulted in a decrease in herbaceous root biomass and an increase in soil carbon and leaf biomass of grass under Acacia. Tree position in the catena did not modify the impact of trees on the herbaceous layer and soil properties. For management of livestock we recommend retaining tall Acacia trees and partially removing medium-sized Acacia trees because the latter had negative effects on grass quality.

On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes

PubMed Central

2018-01-01

We studied the phylogeography and plumage variation of the Russet-crowned Warbler (Myiothlypis coronata), from Venezuela to Bolivia, with focus on populations from Ecuador and northern Peru. We analyzed sequences of mitochondrial and nuclear genes, geographic distributions, as well as photographs of specimens deposited at museum collections. Phylogenetic analyses identified three major lineages formed by populations from: Venezuela and Colombia (M. c. regulus), Ecuador and northern Peru (M. elata, M. castaneiceps, M. orientalis, M. c. chapmani), and central Peru and Bolivia (M. c. coronata). We found further population structure within M. c. regulus and M. c. coronata, and population structure and complexity of plumage variation within the Ecuador-northern Peru lineage. Time-calibrated trees estimated that most intraspecific variation originated during the Pleistocene; however, this pattern may not be attributed to an increase in diversification rate during that period. We discuss these results in the context of the importance of geographic-ecological barriers in promoting lineage diversification along the Andes and put forward a preliminary taxonomic proposal for major lineages identified in this study. PMID:29522515

On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes.

PubMed

Prieto-Torres, David A; Cuervo, Andrés M; Bonaccorso, Elisa

2018-01-01

We studied the phylogeography and plumage variation of the Russet-crowned Warbler (Myiothlypis coronata), from Venezuela to Bolivia, with focus on populations from Ecuador and northern Peru. We analyzed sequences of mitochondrial and nuclear genes, geographic distributions, as well as photographs of specimens deposited at museum collections. Phylogenetic analyses identified three major lineages formed by populations from: Venezuela and Colombia (M. c. regulus), Ecuador and northern Peru (M. elata, M. castaneiceps, M. orientalis, M. c. chapmani), and central Peru and Bolivia (M. c. coronata). We found further population structure within M. c. regulus and M. c. coronata, and population structure and complexity of plumage variation within the Ecuador-northern Peru lineage. Time-calibrated trees estimated that most intraspecific variation originated during the Pleistocene; however, this pattern may not be attributed to an increase in diversification rate during that period. We discuss these results in the context of the importance of geographic-ecological barriers in promoting lineage diversification along the Andes and put forward a preliminary taxonomic proposal for major lineages identified in this study.

Insects attracted to Maple Sap: Observations from Prince Edward Island, Canada

PubMed Central

Majka, Christopher G.

2010-01-01

Abstract The collection of maple sap for the production of maple syrup is a large commercial enterprise in Canada and the United States. In Canada, which produces 85% of the world’s supply, it has an annual value of over $168 million CAD. Over 38 million trees are tapped annually, 6.5% of which use traditional buckets for sap collection. These buckets attract significant numbers of insects. Despite this, there has been very little investigation of the scale of this phenomenon and the composition of insects that are attracted to this nutrient source. The present paper reports the results of a preliminary study conducted on Prince Edward Island, Canada. Twenty-eight species of Coleoptera, Lepidoptera, and Trichoptera were found in maple sap buckets, 19 of which are known to be attracted to saps and nectars. The physiological role of sap feeding is discussed with reference to moths of the tribe Xylenini, which are active throughout the winter, and are well documented as species that feed on sap flows. Additionally, 18 of the 28 species found in this study are newly recorded in Prince Edward Island. PMID:21594122

Insects attracted to Maple Sap: Observations from Prince Edward Island, Canada.

PubMed

Majka, Christopher G

2010-07-23

The collection of maple sap for the production of maple syrup is a large commercial enterprise in Canada and the United States. In Canada, which produces 85% of the world's supply, it has an annual value of over $168 million CAD. Over 38 million trees are tapped annually, 6.5% of which use traditional buckets for sap collection. These buckets attract significant numbers of insects. Despite this, there has been very little investigation of the scale of this phenomenon and the composition of insects that are attracted to this nutrient source. The present paper reports the results of a preliminary study conducted on Prince Edward Island, Canada. Twenty-eight species of Coleoptera, Lepidoptera, and Trichoptera were found in maple sap buckets, 19 of which are known to be attracted to saps and nectars. The physiological role of sap feeding is discussed with reference to moths of the tribe Xylenini, which are active throughout the winter, and are well documented as species that feed on sap flows. Additionally, 18 of the 28 species found in this study are newly recorded in Prince Edward Island.

TreePOD: Sensitivity-Aware Selection of Pareto-Optimal Decision Trees.

PubMed

Muhlbacher, Thomas; Linhardt, Lorenz; Moller, Torsten; Piringer, Harald

2018-01-01

Balancing accuracy gains with other objectives such as interpretability is a key challenge when building decision trees. However, this process is difficult to automate because it involves know-how about the domain as well as the purpose of the model. This paper presents TreePOD, a new approach for sensitivity-aware model selection along trade-offs. TreePOD is based on exploring a large set of candidate trees generated by sampling the parameters of tree construction algorithms. Based on this set, visualizations of quantitative and qualitative tree aspects provide a comprehensive overview of possible tree characteristics. Along trade-offs between two objectives, TreePOD provides efficient selection guidance by focusing on Pareto-optimal tree candidates. TreePOD also conveys the sensitivities of tree characteristics on variations of selected parameters by extending the tree generation process with a full-factorial sampling. We demonstrate how TreePOD supports a variety of tasks involved in decision tree selection and describe its integration in a holistic workflow for building and selecting decision trees. For evaluation, we illustrate a case study for predicting critical power grid states, and we report qualitative feedback from domain experts in the energy sector. This feedback suggests that TreePOD enables users with and without statistical background a confident and efficient identification of suitable decision trees.

Occurrence of termites (Isoptera) on living and standing dead trees in a tropical dry forest in Mexico.

PubMed

Calderón-Cortés, Nancy; Escalera-Vázquez, Luis H; Oyama, Ken

2018-01-01

Termites play a key role as ecosystem engineers in numerous ecological processes though their role in the dynamics of wood degradation in tropical dry forests, particularly at the level of the crown canopy, has been little studied. In this study, we analysed the occurrence of termites in the forest canopy by evaluating the density and proportion of living and standing dead trees associated with termites in deciduous and riparian habitats of the tropical dry forest in Chamela, Mexico. The results indicated that 60-98% of standing dead trees and 23-59% of living trees in Chamela were associated with termites. In particular, we found that the density of standing dead trees was higher in deciduous forests (0.057-0.066 trees/m 2 ) than in riparian forests (0.022 and 0.027 trees/m 2 ), even though the proportion of trees was not significantly different among habitats. Additionally, we found a higher density of trees associated with termites in trees of smaller size classes (0.01-0.09 trees/m 2 ) than in larger class sizes (0-0.02 trees/m 2 ). Interestingly, 72% of variation in the density of trees associated with termites is explained by the density of standing dead trees. Overall, these results indicate that standing dead tree availability might be the main factor regulating termite populations in Chamela forest and suggest that termites could play a key role in the decomposition of above-ground dead wood, mediating the incorporation of suspended and standing dead wood into the soil.

Occurrence of termites (Isoptera) on living and standing dead trees in a tropical dry forest in Mexico

PubMed Central

Escalera-Vázquez, Luis H.; Oyama, Ken

2018-01-01

Termites play a key role as ecosystem engineers in numerous ecological processes though their role in the dynamics of wood degradation in tropical dry forests, particularly at the level of the crown canopy, has been little studied. In this study, we analysed the occurrence of termites in the forest canopy by evaluating the density and proportion of living and standing dead trees associated with termites in deciduous and riparian habitats of the tropical dry forest in Chamela, Mexico. The results indicated that 60–98% of standing dead trees and 23–59% of living trees in Chamela were associated with termites. In particular, we found that the density of standing dead trees was higher in deciduous forests (0.057–0.066 trees/m2) than in riparian forests (0.022 and 0.027 trees/m2), even though the proportion of trees was not significantly different among habitats. Additionally, we found a higher density of trees associated with termites in trees of smaller size classes (0.01–0.09 trees/m2) than in larger class sizes (0–0.02 trees/m2). Interestingly, 72% of variation in the density of trees associated with termites is explained by the density of standing dead trees. Overall, these results indicate that standing dead tree availability might be the main factor regulating termite populations in Chamela forest and suggest that termites could play a key role in the decomposition of above-ground dead wood, mediating the incorporation of suspended and standing dead wood into the soil. PMID:29785342

Use of narrow-band imaging bronchoscopy in detection of lung cancer.

PubMed

Zaric, Bojan; Perin, Branislav

2010-05-01

Narrow-band imaging (NBI) is a new endoscopic technique designed for detection of pathologically altered submucosal and mucosal microvascular patterns. The combination of magnification videobronchoscopy and NBI showed great potential in the detection of precancerous and cancerous lesions of the bronchial mucosa. The preliminary studies confirmed supremacy of NBI over white-light videobronchoscopy in the detection of premalignant and malignant lesions. Pathological patterns of capillaries in bronchial mucosa are known as Shibuya's descriptors (dotted, tortuous and abrupt-ending blood vessels). Where respiratory endoscopy is concerned, the NBI is still a 'technology in search of proper indication'. More randomized trials are necessary to confirm the place of NBI in the diagnostic algorithm, and more trials are needed to evaluate the relation of NBI to autofluorescence videobronchoscopy and to white-light magnification videobronchoscopy. Considering the fact that NBI examination of the tracheo-bronchial tree is easy, reproducible and clear to interpret, it is certain that NBI videobronchoscopy will play a significant role in the future of lung cancer detection and staging.

Computer-based route-definition system for peripheral bronchoscopy.

PubMed

Graham, Michael W; Gibbs, Jason D; Higgins, William E

2012-04-01

Multi-detector computed tomography (MDCT) scanners produce high-resolution images of the chest. Given a patient's MDCT scan, a physician can use an image-guided intervention system to first plan and later perform bronchoscopy to diagnostic sites situated deep in the lung periphery. An accurate definition of complete routes through the airway tree leading to the diagnostic sites, however, is vital for avoiding navigation errors during image-guided bronchoscopy. We present a system for the robust definition of complete airway routes suitable for image-guided bronchoscopy. The system incorporates both automatic and semiautomatic MDCT analysis methods for this purpose. Using an intuitive graphical user interface, the user invokes automatic analysis on a patient's MDCT scan to produce a series of preliminary routes. Next, the user visually inspects each route and quickly corrects the observed route defects using the built-in semiautomatic methods. Application of the system to a human study for the planning and guidance of peripheral bronchoscopy demonstrates the efficacy of the system.

Comparing aye-aye (Daubentonia madagascariensis) presence and distribution between degraded and non-degraded forest within Ranomafana National Park, Madagascar.

PubMed

Farris, Zach J; Morelli, Toni Lyn; Sefczek, Timothy; Wright, Patricia C

2011-01-01

The aye-aye is considered the most widely distributed lemur in Madagascar; however, the effect of forest quality on aye-aye abundance is unknown. We compared aye-aye presence across degraded and non-degraded forest at Ranomafana National Park, Madagascar. We used secondary signs (feeding sites, high activity sites) as indirect cues of aye-aye presence and Canarium trees as an indicator of resource availability. All 3 measured variables indicated higher aye-aye abundance within non-degraded forest; however, the differences across forest type were not significant. Both degraded and non-degraded forests showed a positive correlation between feeding sites and high activity sites. We found that Canarium, an important aye-aye food source, was rare and had limited dispersal, particularly across degraded forest. This preliminary study provides baseline data for aye-aye activity and resource utilization across degraded and non-degraded forests. Copyright © 2011 S. Karger AG, Basel.

Proof-of-Concept of the Phytoimmobilization Technology for TNX Outfall Delta: Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaplan, D.I.

2001-06-04

A series of proof-of-principle studies was initiated to evaluate the soil remediation technology, phytoimmobilization, for application at the TNX Outfall Delta (TNX OD) operable unit. Phytoimmobilization involves two steps. The first step is entitled phytoextraction, and it takes place mostly during the spring and summer. During this step the plants extract contaminants from the sediment into the roots and then translocate the contaminants to the aboveground plant parts. The second step is referred to as sequestration and it takes place largely during the autumn and winter when annual plants senesce or deciduous trees drop their leaves. This step involves themore » immobilization of the contaminant once it leaches form the fallen leaves into a ''geomat,'' a geotextile embedded with mineral sequestering agents. This final report describes the results to date, including those reported in the status report (Kaplan et al. 2000a), those completed since the report was issued, and the preliminary calculations of the phytoimmobilization effectiveness.« less

Depth distribution of (137)Cs in anthrosol from the experimental field "Radmilovac" near Belgrade, Serbia.

PubMed

Vukašinović, Ivana; Todorović, Dragana; Dorđević, Aleksandar; Rajković, Miloš B; Pavlović, Vladimir B

2013-09-01

This is a preliminary study of the depth distribution of (137)Cs radionuclides in cultivated anthrosol soil of a 15-year old peach tree plantation at the experimental field "Radmilovac" near Belgrade. Before planting, the soil was ploughed at the depth of 1 m. The soil had not been annually ploughed, irrigated and treated with mineral fertilizers for three years before sampling. Activity concentration for (137)Cs ranged from 1.8 Bq kg(-1) to 35 Bq kg(-1). Along the soil depth it varied highly, reaching as high a total variation coefficient as 83 %. Radiocaesium distribution patterns depended on the extent of soil mixing in the plough layer, as it was mechanically transferred from the surface to the lower soil layers during cultivation. (137)Cs was associated with humus content and fixation to clay fractions in the soil. Our results single out soil's hygroscopic water as a valuable parameter for (137)Cs behaviour that could be used commonly if the measurement is standardised.

Deep Borehole Emplacement Mode Hazard Analysis Revision 0

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sevougian, S. David

This letter report outlines a methodology and provides resource information for the Deep Borehole Emplacement Mode Hazard Analysis (DBEMHA). The main purpose is identify the accident hazards and accident event sequences associated with the two emplacement mode options (wireline or drillstring), to outline a methodology for computing accident probabilities and frequencies, and to point to available databases on the nature and frequency of accidents typically associated with standard borehole drilling and nuclear handling operations. Risk mitigation and prevention measures, which have been incorporated into the two emplacement designs (see Cochran and Hardin 2015), are also discussed. A key intent ofmore » this report is to provide background information to brief subject matter experts involved in the Emplacement Mode Design Study. [Note: Revision 0 of this report is concentrated more on the wireline emplacement mode. It is expected that Revision 1 will contain further development of the preliminary fault and event trees for the drill string emplacement mode.]« less

Categorizing Ideas about Trees: A Tree of Trees

PubMed Central

Fisler, Marie; Lecointre, Guillaume

2013-01-01

The aim of this study is to explore whether matrices and MP trees used to produce systematic categories of organisms could be useful to produce categories of ideas in history of science. We study the history of the use of trees in systematics to represent the diversity of life from 1766 to 1991. We apply to those ideas a method inspired from coding homologous parts of organisms. We discretize conceptual parts of ideas, writings and drawings about trees contained in 41 main writings; we detect shared parts among authors and code them into a 91-characters matrix and use a tree representation to show who shares what with whom. In other words, we propose a hierarchical representation of the shared ideas about trees among authors: this produces a “tree of trees.” Then, we categorize schools of tree-representations. Classical schools like “cladists” and “pheneticists” are recovered but others are not: “gradists” are separated into two blocks, one of them being called here “grade theoreticians.” We propose new interesting categories like the “buffonian school,” the “metaphoricians,” and those using “strictly genealogical classifications.” We consider that networks are not useful to represent shared ideas at the present step of the study. A cladogram is made for showing who is sharing what with whom, but also heterobathmy and homoplasy of characters. The present cladogram is not modelling processes of transmission of ideas about trees, and here it is mostly used to test for proximity of ideas of the same age and for categorization. PMID:23950877

Estimating Forest Vertical Structure from Multialtitude, Fixed-Baseline Radar Interferometric and Polarimetric Data

NASA Technical Reports Server (NTRS)

Treuhaft, Robert N.; Law, Beverly E.; Siqueira, Paul R.

2000-01-01

Parameters describing the vertical structure of forests, for example tree height, height-to-base-of-live-crown, underlying topography, and leaf area density, bear on land-surface, biogeochemical, and climate modeling efforts. Single, fixed-baseline interferometric synthetic aperture radar (INSAR) normalized cross-correlations constitute two observations from which to estimate forest vertical structure parameters: Cross-correlation amplitude and phase. Multialtitude INSAR observations increase the effective number of baselines potentially enabling the estimation of a larger set of vertical-structure parameters. Polarimetry and polarimetric interferometry can further extend the observation set. This paper describes the first acquisition of multialtitude INSAR for the purpose of estimating the parameters describing a vegetated land surface. These data were collected over ponderosa pine in central Oregon near longitude and latitude -121 37 25 and 44 29 56. The JPL interferometric TOPSAR system was flown at the standard 8-km altitude, and also at 4-km and 2-km altitudes, in a race track. A reference line including the above coordinates was maintained at 35 deg for both the north-east heading and the return southwest heading, at all altitudes. In addition to the three altitudes for interferometry, one line was flown with full zero-baseline polarimetry at the 8-km altitude. A preliminary analysis of part of the data collected suggests that they are consistent with one of two physical models describing the vegetation: 1) a single-layer, randomly oriented forest volume with a very strong ground return or 2) a multilayered randomly oriented volume; a homogeneous, single-layer model with no ground return cannot account for the multialtitude correlation amplitudes. Below the inconsistency of the data with a single-layer model is followed by analysis scenarios which include either the ground or a layered structure. The ground returns suggested by this preliminary analysis seem too strong to be plausible, but parameters describing a two-layer compare reasonably well to a field-measured probability distribution of tree heights in the area.

ColorTree: a batch customization tool for phylogenic trees

PubMed Central

Chen, Wei-Hua; Lercher, Martin J

2009-01-01

Background Genome sequencing projects and comparative genomics studies typically aim to trace the evolutionary history of large gene sets, often requiring human inspection of hundreds of phylogenetic trees. If trees are checked for compatibility with an explicit null hypothesis (e.g., the monophyly of certain groups), this daunting task is greatly facilitated by an appropriate coloring scheme. Findings In this note, we introduce ColorTree, a simple yet powerful batch customization tool for phylogenic trees. Based on pattern matching rules, ColorTree applies a set of customizations to an input tree file, e.g., coloring labels or branches. The customized trees are saved to an output file, which can then be viewed and further edited by Dendroscope (a freely available tree viewer). ColorTree runs on any Perl installation as a stand-alone command line tool, and its application can thus be easily automated. This way, hundreds of phylogenic trees can be customized for easy visual inspection in a matter of minutes. Conclusion ColorTree allows efficient and flexible visual customization of large tree sets through the application of a user-supplied configuration file to multiple tree files. PMID:19646243

ColorTree: a batch customization tool for phylogenic trees.

PubMed

Chen, Wei-Hua; Lercher, Martin J

2009-07-31

Genome sequencing projects and comparative genomics studies typically aim to trace the evolutionary history of large gene sets, often requiring human inspection of hundreds of phylogenetic trees. If trees are checked for compatibility with an explicit null hypothesis (e.g., the monophyly of certain groups), this daunting task is greatly facilitated by an appropriate coloring scheme. In this note, we introduce ColorTree, a simple yet powerful batch customization tool for phylogenic trees. Based on pattern matching rules, ColorTree applies a set of customizations to an input tree file, e.g., coloring labels or branches. The customized trees are saved to an output file, which can then be viewed and further edited by Dendroscope (a freely available tree viewer). ColorTree runs on any Perl installation as a stand-alone command line tool, and its application can thus be easily automated. This way, hundreds of phylogenic trees can be customized for easy visual inspection in a matter of minutes. ColorTree allows efficient and flexible visual customization of large tree sets through the application of a user-supplied configuration file to multiple tree files.

The effect of trees on preferential flow and soil infiltrability in an agroforestry parkland in semiarid Burkina Faso.

PubMed

Bargués Tobella, A; Reese, H; Almaw, A; Bayala, J; Malmer, A; Laudon, H; Ilstedt, U

2014-04-01

Water scarcity constrains the livelihoods of millions of people in tropical drylands. Tree planting in these environments is generally discouraged due to the large water consumption by trees, but this view may neglect their potential positive impacts on water availability. The effect of trees on soil hydraulic properties linked to groundwater recharge is poorly understood. In this study, we performed 18 rainfall simulations and tracer experiments in an agroforestry parkland in Burkina Faso to investigate the effect of trees and associated termite mounds on soil infiltrability and preferential flow. The sampling points were distributed in transects each consisting of three positions: (i) under a single tree, (ii) in the middle of an open area, and (iii) under a tree associated with a termite mound. The degree of preferential flow was quantified through parameters based on the dye infiltration patterns, which were analyzed using image analysis of photographs. Our results show that the degree of preferential flow was highest under trees associated with termite mounds, intermediate under single trees, and minimal in the open areas. Tree density also had an influence on the degree of preferential flow, with small open areas having more preferential flow than large ones. Soil infiltrability was higher under single trees than in the open areas or under trees associated with a termite mound. The findings from this study demonstrate that trees have a positive impact on soil hydraulic properties influencing groundwater recharge, and thus such effects must be considered when evaluating the impact of trees on water resources in drylands. Trees in dryland landscapes increase soil infiltrability and preferential flow Termite mounds in association with trees further enhance preferential flow.

The effect of trees on preferential flow and soil infiltrability in an agroforestry parkland in semiarid Burkina Faso

PubMed Central

Bargués Tobella, A; Reese, H; Almaw, A; Bayala, J; Malmer, A; Laudon, H; Ilstedt, U

2014-01-01

Water scarcity constrains the livelihoods of millions of people in tropical drylands. Tree planting in these environments is generally discouraged due to the large water consumption by trees, but this view may neglect their potential positive impacts on water availability. The effect of trees on soil hydraulic properties linked to groundwater recharge is poorly understood. In this study, we performed 18 rainfall simulations and tracer experiments in an agroforestry parkland in Burkina Faso to investigate the effect of trees and associated termite mounds on soil infiltrability and preferential flow. The sampling points were distributed in transects each consisting of three positions: (i) under a single tree, (ii) in the middle of an open area, and (iii) under a tree associated with a termite mound. The degree of preferential flow was quantified through parameters based on the dye infiltration patterns, which were analyzed using image analysis of photographs. Our results show that the degree of preferential flow was highest under trees associated with termite mounds, intermediate under single trees, and minimal in the open areas. Tree density also had an influence on the degree of preferential flow, with small open areas having more preferential flow than large ones. Soil infiltrability was higher under single trees than in the open areas or under trees associated with a termite mound. The findings from this study demonstrate that trees have a positive impact on soil hydraulic properties influencing groundwater recharge, and thus such effects must be considered when evaluating the impact of trees on water resources in drylands. Key Points Trees in dryland landscapes increase soil infiltrability and preferential flow Termite mounds in association with trees further enhance preferential flow PMID:25641996

Los Angeles 1-Million tree canopy cover assessment

Treesearch

Gregory E. McPherson; James R. Simpson; Qingfu Xiao; Wu Chunxia

2008-01-01

The Million Trees LA initiative intends to chart a course for sustainable growth through planting and stewardship of trees. The purpose of this study was to measure Los Angeles's existing tree canopy cover (TCC), determine if space exists for 1 million additional trees, and estimate future benefits from the planting. High resolution QuickBird remote sensing data,...

Factors affecting long-term mortality of residential shade trees: evidence from Sacramento, California

Treesearch

Yekang Ko; Jun-Hak Lee; E. Gregory McPherson; Lara A. Roman

2015-01-01

Urban tree survival is essential to sustain the ecosystem services of urban forests and monitoring is needed to accurately assess benefits. While some urban forestry studies have reported street tree survival, little is known about the factors influencing residential yard tree survival, especially over the long-term. We assessed residential shade tree survival in...

Applications of ion chromatography to study pollution effects on forest trees

Treesearch

Walter C. Shortle; Rakesh Minocha

1990-01-01

Air pollution and acidic deposition can influence forest tree growth and survival by causing ionic imbalances in the rooting zone. Altered nutrient status suppresses tree growth and weakens its immune system. Internal infections spread more quickly in response to weakened tree defenses. As adverse conditions persist, many trees die and the survivors are less healthy....

Tree growth-climate relationships in a forest-plot network on Mediterranean mountains.

PubMed

Fyllas, Nikolaos M; Christopoulou, Anastasia; Galanidis, Alexandros; Michelaki, Chrysanthi Z; Dimitrakopoulos, Panayiotis G; Fulé, Peter Z; Arianoutsou, Margarita

2017-11-15

In this study we analysed a novel tree-growth dataset, inferred from annual ring-width measurements, of 7 forest tree species from 12 mountain regions in Greece, in order to identify tree growth - climate relationships. The tree species of interest were: Abies cephalonica, Abies borisii-regis, Picea abies, Pinus nigra, Pinus sylvestris, Fagus sylvatica and Quercus frainetto growing across a gradient of climate conditions with mean annual temperature ranging from 5.7 to 12.6°C and total annual precipitation from 500 to 950mm. In total, 344 tree cores (one per tree) were analysed across a network of 20 study sites. We found that water availability during the summer period (May-August) was a strong predictor of interannual variation in tree growth for all study species. Across species and sites, annual tree growth was positively related to summer season precipitation (P SP ). The responsiveness of annual growth to P SP was tightly related to species and site specific measurements of instantaneous photosynthetic water use efficiency (WUE), suggesting that the growth of species with efficient water use is more responsive to variations in precipitation during the dry months of the year. Our findings support the importance of water availability for the growth of mountainous Mediterranean tree species and highlight that future reductions in precipitation are likely to lead to reduced tree-growth under climate change conditions. Copyright © 2017 Elsevier B.V. All rights reserved.

Decision trees in epidemiological research.

PubMed

Venkatasubramaniam, Ashwini; Wolfson, Julian; Mitchell, Nathan; Barnes, Timothy; JaKa, Meghan; French, Simone

2017-01-01

In many studies, it is of interest to identify population subgroups that are relatively homogeneous with respect to an outcome. The nature of these subgroups can provide insight into effect mechanisms and suggest targets for tailored interventions. However, identifying relevant subgroups can be challenging with standard statistical methods. We review the literature on decision trees, a family of techniques for partitioning the population, on the basis of covariates, into distinct subgroups who share similar values of an outcome variable. We compare two decision tree methods, the popular Classification and Regression tree (CART) technique and the newer Conditional Inference tree (CTree) technique, assessing their performance in a simulation study and using data from the Box Lunch Study, a randomized controlled trial of a portion size intervention. Both CART and CTree identify homogeneous population subgroups and offer improved prediction accuracy relative to regression-based approaches when subgroups are truly present in the data. An important distinction between CART and CTree is that the latter uses a formal statistical hypothesis testing framework in building decision trees, which simplifies the process of identifying and interpreting the final tree model. We also introduce a novel way to visualize the subgroups defined by decision trees. Our novel graphical visualization provides a more scientifically meaningful characterization of the subgroups identified by decision trees. Decision trees are a useful tool for identifying homogeneous subgroups defined by combinations of individual characteristics. While all decision tree techniques generate subgroups, we advocate the use of the newer CTree technique due to its simplicity and ease of interpretation.

Nesting tree characteristics of heronry birds of urban ecosystems in peninsular India: implications for habitat management

PubMed Central

Sinu, Palatty Allesh

2017-01-01

Abstract Wetland ecosystems, particularly the mangrove forest, are the primary wild habitat of heronry birds. However, urban ecosystems have become a favorite breeding habitat of these birds. To provide inputs into the habitat management for conservation of these birds, we investigated the quantitative and qualitative characteristics of nesting trees of heronry birds in the urban environment of the North Kerala region of peninsular India. Census on nesting trees was done in 3 major microhabitats of the urban ecosystem: avenues of national highways and towns, nonresidential plots, and residential areas apart from the mangrove islets in the peri-urban locality. The study found that 174 trees of 22 species hosted 1,928 heronry bird nests in the urban habitats; mangrove forests, although plentiful in the study area, hosted only about 20% of the total nests encountered in the study. Rain trees Samanea saman (43.7%) were the most available nesting tree. The greatest number of nests and nesting trees were encountered on the roads of urban areas, followed by nonresidential areas and residential areas. The differences in the observed frequencies of nesting trees in 3 microhabitats and in 3 types of roads (national highways > state highways > small pocket road) were significant. Canopy spread, girth size, and quality of the trees predicted the tree selection of the heronry birds in urban environments. Therefore, we recommend proper management and notification of the identified nesting trees as protected sites for the conservation of herorny birds. PMID:29492020

Nesting tree characteristics of heronry birds of urban ecosystems in peninsular India: implications for habitat management.

PubMed

Roshnath, Ramesh; Sinu, Palatty Allesh

2017-12-01

Wetland ecosystems, particularly the mangrove forest, are the primary wild habitat of heronry birds. However, urban ecosystems have become a favorite breeding habitat of these birds. To provide inputs into the habitat management for conservation of these birds, we investigated the quantitative and qualitative characteristics of nesting trees of heronry birds in the urban environment of the North Kerala region of peninsular India. Census on nesting trees was done in 3 major microhabitats of the urban ecosystem: avenues of national highways and towns, nonresidential plots, and residential areas apart from the mangrove islets in the peri-urban locality. The study found that 174 trees of 22 species hosted 1,928 heronry bird nests in the urban habitats; mangrove forests, although plentiful in the study area, hosted only about 20% of the total nests encountered in the study. Rain trees Samanea saman (43.7%) were the most available nesting tree. The greatest number of nests and nesting trees were encountered on the roads of urban areas, followed by nonresidential areas and residential areas. The differences in the observed frequencies of nesting trees in 3 microhabitats and in 3 types of roads (national highways > state highways > small pocket road) were significant. Canopy spread, girth size, and quality of the trees predicted the tree selection of the heronry birds in urban environments. Therefore, we recommend proper management and notification of the identified nesting trees as protected sites for the conservation of herorny birds.

Steiner trees and spanning trees in six-pin soap films

NASA Astrophysics Data System (ADS)

Dutta, Prasun; Khastgir, S. Pratik; Roy, Anushree

2010-02-01

The problem of finding minimum (local as well as absolute) path lengths joining given points (or terminals) on a plane is known as the Steiner problem. The Steiner problem arises in finding the minimum total road length joining several towns and cities. We study the Steiner tree problem using six-pin soap films. Experimentally, we observe spanning trees as well as Steiner trees partly by varying the pin diameter. We propose a possibly exact expression for the length of a spanning tree or a Steiner tree, which fails mysteriously in certain cases.

A 3PG-based Model to Simulate Delta-13C Content in Three Tree Species in The Mica Creek Experiment Watershed, Idaho

NASA Astrophysics Data System (ADS)

Wei, L.; Marshall, J. D.

2007-12-01

3PG (Physiological Principles in Predicting Growth), a process-based physiological model of forest productivity, has been widely used and well validated. Based on 3PG, a 3PG-δ13C model to simulate δ13C content in plant tissue is built in this research. 3PG calculates carbon assimilation from utilizable absorbed photosynthetically active radiation (PAR), and calculates stomatal conductance from maximum canopy conductance multiplied by physiological modifier which includes the effect of water vapor deficit and soil water. Then the equation of Farquhar and Sharkey (1982) was used to calculate δ13C content in plant. Five even-aged coniferous forest stands located near Clarkia, Idaho (47°15'N, 115°25'W) in Mica Creek Experimental Watershed, were chosen to test the model, (2 stands had been partial cut (50% canopy removal in 1990) and 3 were uncut). MCEW has been extensively investigated since 1990 and many necessary parameters needed for 3PG are readily available. Each of these sites is located near a UI Meteorological station, which recorded half-hourly climatic data since 2003. These site-specific climatic data were extend to 1991 by correlating with data from a nearby SNOTEL station (SNOwpack TELemetry, NRCS, 47°9' N, 116°16' W). Forest mensuration data were obtained form each stand using variable radius plots (VRP). Three tree species, which consist more than 95% of all trees, were parameterized for 3PG model, including: grand fir (Abies grandis Donn ex D. Don), western red cedar (Thuja plicat Donn ex D. Don a) and Douglas-fir (Pseudotsuga menziesii var. glauca (Beissn.) Franco). Because 4 out of 5 stands have mixed species, we also used parameters for mixed stands to run the model. To stabilize, the model was initially run under average climatic data for 20 years, and then run under the actual climatic data from 1991 to 2006. As 3PG runs in a monthly time step, monthly δ13C values were calculated first, and then yearly values were calculated by weighted averages. For testing the model, tree cores were collected from each stand and species. Ring-widths of tree cores were measured and cross-dated with a ring-width chronology obtained from MCEW. δ13C contents of tree- ring samples from known year were tested. Preliminary results indicate 3PG-δ13C simulated values are consistent with observed values in tree-rings. δ13C values of modeled species are different: western red cider has the highest delta13C values among the three species and western larch has the lowest.

Acorn Production and Tree Growth of Nuttall Oak in a Green-Tree Reservoir

Treesearch

John K. Francis

1983-01-01

Green-tree reservoirs, created by flooding live timber stands, provide resting places and food for wintering waterfowl. The effects of winter flooding in terms of acorn production and growth of Nuttall oaks were studied in a reservoir which had been flooded annually for 15 years and in a nearby unflooded site. The study, which lasted for 5 years, included four tree...

Uncertainty of large-area estimates of indicators of forest structural gamma diversity: A study based on national forest inventory data

Treesearch

Susanne Winter; Andreas Böck; Ronald E. McRoberts

2012-01-01

Tree diameter and height are commonly measured forest structural variables, and indicators based on them are candidates for assessing forest diversity. We conducted our study on the uncertainty of estimates for mostly large geographic scales for four indicators of forest structural gamma diversity: mean tree diameter, mean tree height, and standard deviations of tree...

Comparing tree foliage biomass models fitted to a multispecies, felled-tree biomass dataset for the United States

Treesearch

Brian J. Clough; Matthew B. Russell; Grant M. Domke; Christopher W. Woodall; Philip J. Radtke

2016-01-01

tEstimation of live tree biomass is an important task for both forest carbon accounting and studies of nutri-ent dynamics in forest ecosystems. In this study, we took advantage of an extensive felled-tree database(with 2885 foliage biomass observations) to compare different models and grouping schemes based onphylogenetic and geographic variation for predicting foliage...

Growing quality of life: urban trees, birth weight, and crime

Treesearch

John Kirkland; Geoffrey Donovan

2011-01-01

City dwellers can find many reasons to value neighborhood trees. The urban greenery provides relief from the built environment that many find appealing. In fact, a previous study found that a tree in front of a home increased that home's sales price by more than $7,000. Two new studies explore the measurable effects that urban trees and green spaces have a human...

Using Tree-Ring Data to Develop Critical Scientific and Mathematical Thinking Skills in Undergraduate Students

NASA Astrophysics Data System (ADS)

Fiondella, F.; Davi, N. K.; Wattenberg, F.; Pringle, P. T.; Greidanus, I.; Oelkers, R.

2015-12-01

Tree-ring science provides an engaging, intuitive, and relevant entryway into understanding both climate change and environmental research. It also sheds light on the process of science--from inspiration, to fieldwork, to analysis, to publishing and communication. The basic premise of dendrochronology is that annual rings reflect year-to-year environmental conditions and that by studying long-lived trees we can learn about environmental and climatic conditions going back hundreds to thousands of years. Conceptually, this makes tree-ring studies accessible to students and faculty for a number of reasons. First, in order to collect their data, dendrochronologists often launch expeditions to stunningly picturesque and remote places in search of long-lived, climate sensitive trees. The exciting stories and images that scientists bring back from the field can help connect students to the studies, their motivation, and the data collected. Second, tree rings can be more easily explained as a proxy for climate than ice cores, speleothems and others. Most people have prior knowledge about trees and annual growth rings. It is even possible, for example, for non-expert audiences to see climate variability through time with the naked eye by looking at climate-sensitive tree cores. Third, tree rings are interdisciplinary and illustrate the interplay between the mathematical sciences, the biological sciences, and the geosciences—that is, they show that the biosphere is a fundamental component of the Earth system. Here, we present online, multi-media learning modules for undergraduates that introduce students to several foundational studies in tree-ring science. These include evaluating tree-ring cores from ancient hemlock trees growing on a talus slope in New Paltz, NY to learn about drought in the Northeastern US, evaluating long-term streamflow and drought of the Colorado River based on tree-ring records, and using tree-ring dating techniques to develop construction histories of cliff dwellings and pueblos in the US Southwest. Our modules are designed to give undergraduate students a sense of the scientific process, from fieldwork and logistics, to data processing and data analysis.

Assessing visual green effects of individual urban trees using airborne Lidar data.

PubMed

Chen, Ziyue; Xu, Bing; Gao, Bingbo

2015-12-01

Urban trees benefit people's daily life in terms of air quality, local climate, recreation and aesthetics. Among these functions, a growing number of studies have been conducted to understand the relationship between residents' preference towards local environments and visual green effects of urban greenery. However, except for on-site photography, there are few quantitative methods to calculate green visibility, especially tree green visibility, from viewers' perspectives. To fill this research gap, a case study was conducted in the city of Cambridge, which has a diversity of tree species, sizes and shapes. Firstly, a photograph-based survey was conducted to approximate the actual value of visual green effects of individual urban trees. In addition, small footprint airborne Lidar (Light detection and ranging) data was employed to measure the size and shape of individual trees. Next, correlations between visual tree green effects and tree structural parameters were examined. Through experiments and gradual refinement, a regression model with satisfactory R2 and limited large errors is proposed. Considering the diversity of sample trees and the result of cross-validation, this model has the potential to be applied to other study sites. This research provides urban planners and decision makers with an innovative method to analyse and evaluate landscape patterns in terms of tree greenness. Copyright © 2015 Elsevier B.V. All rights reserved.

Relating tree growth to rainfall in Bolivian rain forests: a test for six species using tree ring analysis.

PubMed

Brienen, Roel J W; Zuidema, Pieter A

2005-11-01

Many tropical regions show one distinct dry season. Often, this seasonality induces cambial dormancy of trees, particularly if these belong to deciduous species. This will often lead to the formation of annual rings. The aim of this study was to determine whether tree species in the Bolivian Amazon region form annual rings and to study the influence of the total amount and seasonal distribution of rainfall on diameter growth. Ring widths were measured on stem discs of a total of 154 trees belonging to six rain forest species. By correlating ring width and monthly rainfall data we proved the annual character of the tree rings for four of our study species. For two other species the annual character was proved by counting rings on trees of known age and by radiocarbon dating. The results of the climate-growth analysis show a positive relationship between tree growth and rainfall in certain periods of the year, indicating that rainfall plays a major role in tree growth. Three species showed a strong relationship with rainfall at the beginning of the rainy season, while one species is most sensitive to the rainfall at the end of the previous growing season. These results clearly demonstrate that tree ring analysis can be successfully applied in the tropics and that it is a promising method for various research disciplines.

Yellow-Billed Cuckoo Distribution, Abundance, and Habitat Use Along the Lower Colorado and Tributaries, 2006 Annual Report

USGS Publications Warehouse

Johnson, Matthew J.; Holmes, Jennifer A.; Calvo, Christopher; Samuels, Ivan; Krantz, Stefani; Sogge, Mark K.

2007-01-01

Executive Summary This 2006 annual report details the first season of a 2-year study documenting western yellow-billed cuckoo (Coccyzus americanus occidentalis) distribution, abundance, and habitat use throughout the Lower Colorado River Multi-Species Conservation Plan boundary area. We conducted cuckoo surveys at 55 sites within 17 areas, between 11 June and 13 September. The 243 visits across all sites yielded 180 yellow-billed cuckoo detections. Cuckoos were detected at 27 of the 55 sites, primarily at the Bill Williams River National Wildlife Refuge AZ sites (n = 117 detections) and the Grand Canyon National Park-Lake Mead National Recreation Area AZ delta sites (n = 29 detections). There were also cuckoos at the Gila River-Colorado River Confluence, AZ (n = 9), Overton Wildlife Management, NV area (n = 7), and Limitrophe Division North, AZ (n = 6); however, at these sites the numbers were much lower and very few of these birds were considered to be paired or breeding. The greatest number of detections (n = 79) occurred during the second survey period (3-23 July). In 2006, we confirmed five breeding events, including one nesting observation and sightings of four juveniles; all confirmed breeding was at the Bill Williams River NWR and Grand Canyon NP-Lake Mead NRA delta sites. The breeding status of most of our detections were unknown, however, we observed 17 adult cuckoos carrying nest material or food and 40 cuckoo detections were detected while counter-calling occurred in same area during repeated surveys. We used playback recordings to survey for western yellow-billed cuckoos. Compared to simple point counts or surveys, this method increases the number of detections of this secretive, elusive species. It has long been suspected that cuckoos have a fairly low response rate, and that the standard survey method of using playback recordings may fail to detect all birds present in an area. In 2006, we found that the majority (72%) of cuckoo detections were solicited through playback at all study sites. The number of solicited detections peaked during the first half of July and then declined as the breeding season progressed, while the number of unsolicited detections (cuckoos heard calling before playback was initiated) remained fairly constant. The majority (64%) of cuckoo detections, solicited or unsolicited, were aural; 27 percent were both heard and seen and nine percent were visual detections only. Cuckoos in areas with the largest populations had the highest rate of vocalizations before playback or after the first broadcast. In contrast, more than half the responses at sites with fewer cuckoos (with < 10 detections per site) first occurred after three or more playback recordings. This type of baseline information will be used to help refine the survey protocol for 2007, and to create hypotheses that can serve as the foundation for a full-scale evaluation and optimization of this survey technique. Our preliminary analysis of vegetation data from occupied and unoccupied sites in 2006 focused on general patterns in the distribution and abundance of woody species. The density and composition of woody riparian vegetation varied considerably among the study areas. Much of the variation in tree density was due to the patterns of abundance of trees in the smallest size class (< 8 cm dbh). The dominant tree species at the cuckoo survey sites were cottonwood, willow, and tamarisk. Tamarisk was the most common tree, due to the abundance of small (< 8 cm dbh) individuals. When occupied and unoccupied sites were compared, occupied sites tended to have higher average canopy cover, attributable to higher average cover of the mid and low canopy. The dominant canopy at occupied sites most often consisted of cottonwood or willow trees. In addition, occupied sites in most areas had lower than average total tree density whereas unoccupied sites were denser than average. When densities of trees in different size classes were com

Leptogenesis from heavy right-handed neutrinos in CPT violating backgrounds

NASA Astrophysics Data System (ADS)

Bossingham, Thomas; Mavromatos, Nick E.; Sarkar, Sarben

2018-02-01

We discuss leptogenesis in a model with heavy right-handed Majorana neutrinos propagating in a constant but otherwise generic CPT-violating axial time-like background (motivated by string theory). At temperatures much higher than the temperature of the electroweak phase transition, we solve approximately, but analytically (using Padé approximants), the corresponding Boltzmann equations, which describe the generation of lepton asymmetry from the tree-level decays of heavy neutrinos into Standard Model leptons. At such temperatures these leptons are effectively massless. The current work completes in a rigorous way a preliminary treatment of the same system, by some of the present authors. In this earlier work, lepton asymmetry was crudely estimated considering the decay of a right-handed neutrino at rest. Our present analysis includes thermal momentum modes for the heavy neutrino and this leads to a total lepton asymmetry which is bigger by a factor of two as compared to the previous estimate. Nevertheless, our current and preliminary results for the freezeout are found to be in agreement (within a ˜ 12.5% uncertainty). Our analysis depends on a novel use of Padé approximants to solve the Boltzmann equations and may be more widely useful in cosmology.

Effects of Acute Ozone Exposure and Methyl Jasmonate Treatment on White Pine Monoterpene and Sesquiterpene Emission Rates

NASA Astrophysics Data System (ADS)

Faiola, C. L.; Wagner, D.; Allwine, E.; Harley, P. C.; Vanreken, T. M.

2010-12-01

Biogenic volatile organic compounds (BVOCs) are produced by plants and include monoterpenes, sesquiterpenes, and their oxygenated derivatives. These BVOCs are one of the principal factors influencing the oxidative capacity of the atmosphere in forested regions, and impact both ozone concentration and secondary organic aerosol formation. Under unstressed conditions, the release of BVOCs to the atmosphere is primarily controlled by the vapor pressure of the relevant compounds within the plant tissue, which is in turn dependent on temperature as well as complex biochemical production processes. However, various natural and anthropogenic stressors can alter both the quantity and composition of the BVOCs emitted by plants. Many potential stressors are expected to become stronger as climate change effects escalate. The impacts of most stressors on BVOC emissions have not been well characterized, particularly in a field setting where changes in BVOC emissions could have influential feedbacks with climate. This study investigated the effects of two stressors on monoterpene and sesquiterpene emission rates at a field site in northern Michigan: acute ozone exposure and treatment with methyl jasmonate, an herbivory proxy. The study included six repetitions of the same experiment, each time using a new set of sub-canopy eastern white pine specimens. For each experiment, dynamic branch enclosures were simultaneously used on three specimens for sample collection: one ozone treatment tree, one methyl jasmonate treatment tree, and one control tree. Sampling lines were placed in each enclosure and VOCs were collected onto cartridges packed with Tenax GR adsorbent. Samples were collected several times per day for at least two days before treatment and for five days after treatment. Cartridges were analyzed via thermodesorption with an Agilent GC/MS/FID. This analysis allowed the identification and quantification of several monoterpene and sesquiterpene species in the samples. Preliminary results indicate that methyl jasmonate may initiate the expression of inducible terpenes not normally expressed under unstressed conditions. Further analysis of results is ongoing. Ultimately, the results of this study will enable improved estimates of the changes in BVOC emissions from white pine forests resulting from the predicted increases in tropospheric ozone and plant herbivory expected to accompany climate change. Implications for potential feedbacks between altered BVOC emissions and climate change will be discussed.

Exact solutions for species tree inference from discordant gene trees.

PubMed

Chang, Wen-Chieh; Górecki, Paweł; Eulenstein, Oliver

2013-10-01

Phylogenetic analysis has to overcome the grant challenge of inferring accurate species trees from evolutionary histories of gene families (gene trees) that are discordant with the species tree along whose branches they have evolved. Two well studied approaches to cope with this challenge are to solve either biologically informed gene tree parsimony (GTP) problems under gene duplication, gene loss, and deep coalescence, or the classic RF supertree problem that does not rely on any biological model. Despite the potential of these problems to infer credible species trees, they are NP-hard. Therefore, these problems are addressed by heuristics that typically lack any provable accuracy and precision. We describe fast dynamic programming algorithms that solve the GTP problems and the RF supertree problem exactly, and demonstrate that our algorithms can solve instances with data sets consisting of as many as 22 taxa. Extensions of our algorithms can also report the number of all optimal species trees, as well as the trees themselves. To better asses the quality of the resulting species trees that best fit the given gene trees, we also compute the worst case species trees, their numbers, and optimization score for each of the computational problems. Finally, we demonstrate the performance of our exact algorithms using empirical and simulated data sets, and analyze the quality of heuristic solutions for the studied problems by contrasting them with our exact solutions.

Contaminant Gradients in Trees: Directional Tree Coring Reveals Boundaries of Soil and Soil-Gas Contamination with Potential Applications in Vapor Intrusion Assessment.

PubMed

Wilson, Jordan L; Samaranayake, V A; Limmer, Matthew A; Schumacher, John G; Burken, Joel G

2017-12-19

Contaminated sites pose ecological and human-health risks through exposure to contaminated soil and groundwater. Whereas we can readily locate, monitor, and track contaminants in groundwater, it is harder to perform these tasks in the vadose zone. In this study, tree-core samples were collected at a Superfund site to determine if the sample-collection location around a particular tree could reveal the subsurface location, or direction, of soil and soil-gas contaminant plumes. Contaminant-centroid vectors were calculated from tree-core data to reveal contaminant distributions in directional tree samples at a higher resolution, and vectors were correlated with soil-gas characterization collected using conventional methods. Results clearly demonstrated that directional tree coring around tree trunks can indicate gradients in soil and soil-gas contaminant plumes, and the strength of the correlations were directly proportionate to the magnitude of tree-core concentration gradients (spearman's coefficient of -0.61 and -0.55 in soil and tree-core gradients, respectively). Linear regression indicates agreement between the concentration-centroid vectors is significantly affected by in planta and soil concentration gradients and when concentration centroids in soil are closer to trees. Given the existing link between soil-gas and vapor intrusion, this study also indicates that directional tree coring might be applicable in vapor intrusion assessment.

Contaminant gradients in trees: Directional tree coring reveals boundaries of soil and soil-gas contamination with potential applications in vapor intrusion assessment

USGS Publications Warehouse

Wilson, Jordan L.; Samaranayake, V.A.; Limmer, Matthew A.; Schumacher, John G.; Burken, Joel G.

2017-01-01

Contaminated sites pose ecological and human-health risks through exposure to contaminated soil and groundwater. Whereas we can readily locate, monitor, and track contaminants in groundwater, it is harder to perform these tasks in the vadose zone. In this study, tree-core samples were collected at a Superfund site to determine if the sample-collection location around a particular tree could reveal the subsurface location, or direction, of soil and soil-gas contaminant plumes. Contaminant-centroid vectors were calculated from tree-core data to reveal contaminant distributions in directional tree samples at a higher resolution, and vectors were correlated with soil-gas characterization collected using conventional methods. Results clearly demonstrated that directional tree coring around tree trunks can indicate gradients in soil and soil-gas contaminant plumes, and the strength of the correlations were directly proportionate to the magnitude of tree-core concentration gradients (spearman’s coefficient of -0.61 and -0.55 in soil and tree-core gradients, respectively). Linear regression indicates agreement between the concentration-centroid vectors is significantly affected by in-planta and soil concentration gradients and when concentration centroids in soil are closer to trees. Given the existing link between soil-gas and vapor intrusion, this study also indicates that directional tree coring might be applicable in vapor intrusion assessment.

Effect of tree structure on X-band microwave signature of conifers

NASA Technical Reports Server (NTRS)

Mougin, Eric; Lopes, Armand; Karam, Mostafa A.; Fung, Adrian K.

1993-01-01

Experimental studies are performed on some coniferous trees (Austrian pine, Nordmann spruce, and Norway spruce) to investigate the relation between the tree architecture and radar signal at X-band. For a single tree, the RCS is measured as a function of the scatterer location at 90 deg incidence. It is found that the main scatterers are the leafy branches and the difference between sigma(vv) and sigma(hh) is significant at the upper portion of the tree. At the lower portion of the tree, sigma(vv) and sigma(hh) have almost the same level. For a group of trees the angular trends of sigma(vv) and sigma(hh) are measured. It is found that the levels of sigma(vv) and sigma(hh) are of the same order, but their angular trends vary from one tree species to the other depending on the tree species structure. The interpretation of these experimental results is carried out with the help of a theoretical model which accounts for the structure of the tree. According to this theoretical study, the major scattering trend is due to the leaves, while the perturbation to the angular trend and the level difference between sigma(vv) and sigma(hh) are due to the branch orientation distributions (i.e., the tree architecture).

Host tree phenology affects vascular epiphytes at the physiological, demographic and community level

PubMed Central

Einzmann, Helena J. R.; Beyschlag, Joachim; Hofhansl, Florian; Wanek, Wolfgang; Zotz, Gerhard

2015-01-01

The processes that govern diverse tropical plant communities have rarely been studied in life forms other than trees. Structurally dependent vascular epiphytes, a major part of tropical biodiversity, grow in a three-dimensional matrix defined by their hosts, but trees differ in their architecture, bark structure/chemistry and leaf phenology. We hypothesized that the resulting seasonal differences in microclimatic conditions in evergreen vs. deciduous trees would affect epiphytes at different levels, from organ physiology to community structure. We studied the influence of tree leaf phenology on vascular epiphytes on the Island of Barro Colorado, Panama. Five tree species were selected, which were deciduous, semi-deciduous or evergreen. The crowns of drought-deciduous trees, characterized by sunnier and drier microclimates, hosted fewer individuals and less diverse epiphyte assemblages. Differences were also observed at a functional level, e.g. epiphyte assemblages in deciduous trees had larger proportions of Crassulacean acid metabolism species and individuals. At the population level a drier microclimate was associated with lower individual growth and survival in a xerophytic fern. Some species also showed, as expected, lower specific leaf area and higher δ13C values when growing in deciduous trees compared with evergreen trees. As hypothesized, host tree leaf phenology influences vascular epiphytes at different levels. Our results suggest a cascading effect of tree composition and associated differences in tree phenology on the diversity and functioning of epiphyte communities in tropical lowland forests. PMID:25392188

An inventory of trees in Dublin city centre.

PubMed

Ningal, Tine; Mills, Gerald; Smithwick, Pamela

2010-01-01

While urban areas are often considered to be comprised chiefly of artificial surfaces, they can contain a substantial portion of green space and a great diversity of natural habitats. These spaces include public parks, private gardens and street trees, all of which can provide valuable environmental services, such as improved air quality. Trees play a particular role in cities as they are often placed along roadsides and in the median strip of busy streets. As such they regulate access to sunshine, restrict airflow, provide shelter, scavenge air pollutants and manage noise at the street level. A tree planting policy can be an important part of a broader environmental strategy aimed at improving the quality of life in urban areas but this requires up-to-date knowledge of the current tree stock, which does not exist for Dublin. This article presents an inventory of trees in Dublin's city centre, defined as the area between the Grand and Royal canals. The results show that there are over 10,000 trees in the study area representing a density of 684 trees km-2 or one tree to approximately every 50 residents of the city centre. The tree canopy extent when in full foliage was nearly 1 km2 in extent or 6% of the study area. A more detailed analysis of those trees planted along streets shows little species variation but clear distinction in the sizes of trees, which is indicative of the age of planting. These data are used to estimate the carbon stored in Dublin's trees.

Herpes Simplex Virus 1 Infection of Tree Shrews Differs from That of Mice in the Severity of Acute Infection and Viral Transcription in the Peripheral Nervous System

PubMed Central

Li, Lihong; Li, Zhuoran; Wang, Erlin; Yang, Rui; Xiao, Yu; Han, Hongbo; Lang, Fengchao; Li, Xin; Xia, Yujie; Gao, Feng; Li, Qihan; Fraser, Nigel W.

2015-01-01

ABSTRACT Studies of herpes simplex virus (HSV) infections of humans are limited by the use of rodent models such as mice, rabbits, and guinea pigs. Tree shrews (Tupaia belangeri chinensis) are small mammals indigenous to southwest Asia. At behavioral, anatomical, genomic, and evolutionary levels, tree shrews are much closer to primates than rodents are, and tree shrews are susceptible to HSV infection. Thus, we have studied herpes simplex virus 1 (HSV-1) infection in the tree shrew trigeminal ganglion (TG) following ocular inoculation. In situ hybridization, PCR, and quantitative reverse transcription-PCR (qRT-PCR) analyses confirm that HSV-1 latently infects neurons of the TG. When explant cocultivation of trigeminal ganglia was performed, the virus was recovered after 5 days of cocultivation with high efficiency. Swabbing the corneas of latently infected tree shrews revealed that tree shrews shed virus spontaneously at low frequencies. However, tree shrews differ significantly from mice in the expression of key HSV-1 genes, including ICP0, ICP4, and latency-associated transcript (LAT). In acutely infected tree shrew TGs, no level of ICP4 was observed, suggesting the absence of infection or a very weak, acute infection compared to that of the mouse. Immunofluorescence staining with ICP4 monoclonal antibody, and immunohistochemistry detection by HSV-1 polyclonal antibodies, showed a lack of viral proteins in tree shrew TGs during both acute and latent phases of infection. Cultivation of supernatant from homogenized, acutely infected TGs with RS1 cells also exhibited an absence of infectious HSV-1 from tree shrew TGs. We conclude that the tree shrew has an undetectable, or a much weaker, acute infection in the TGs. Interestingly, compared to mice, tree shrew TGs express high levels of ICP0 transcript in addition to LAT during latency. However, the ICP0 transcript remained nuclear, and no ICP0 protein could be seen during the course of mouse and tree shrew TG infections. Taken together, these observations suggest that the tree shrew TG infection differs significantly from the existing rodent models. IMPORTANCE Herpes simplex viruses (HSVs) establish lifelong infection in more than 80% of the human population, and their reactivation leads to oral and genital herpes. Currently, rodent models are the preferred models for latency studies. Rodents are distant from primates and may not fully represent human latency. The tree shrew is a small mammal, a prosimian primate, indigenous to southwest Asia. In an attempt to further develop the tree shrew as a useful model to study herpesvirus infection, we studied the establishment of latency and reactivation of HSV-1 in tree shrews following ocular inoculation. We found that the latent virus, which resides in the sensory neurons of the trigeminal ganglion, could be stress reactivated to produce infectious virus, following explant cocultivation and that spontaneous reactivation could be detected by cell culture of tears. Interestingly, the tree shrew model is quite different from the mouse model of HSV infection, in that the virus exhibited only a mild acute infection following inoculation with no detectable infectious virus from the sensory neurons. The mild infection may be more similar to human infection in that the sensory neurons continue to function after herpes reactivation and the affected skin tissue does not lose sensation. Our findings suggest that the tree shrew is a viable model to study HSV latency. PMID:26512084

When is one core per tree sufficient to characterize stand attributes? Results of a Pinus ponderosa case study

Treesearch

C.W. Woodall

2008-01-01

Increment cores are invaluable for assessing tree attributes such as inside bark diameter, radial growth, and sapwood area. However, because trees accrue growth and sapwood unevenly around their pith, tree attributes derived from one increment core may not provide sufficient precision for forest management/research activities. To assess the variability in a tree's...

Tree health mapping with multispectral remote sensing data at UC Davis, California

Treesearch

Q. Xiao; E.G. McPherson

2005-01-01

Tree health is a critical parameter for evaluating urban ecosystem health and sustainability. Tradi­tionally, this parameter has been derived from field surveys. We used multispectral remote sensing data and GIS techniques to determine tree health at the University of California, Davis. The study area (363 ha) contained 8,962 trees of 215 species. Tree health...

Individual tree differences confound effects of growth regulators in rooting sugar maple softwood cuttings

Treesearch

John R. Donnelly

1971-01-01

Softwood stem cuttings from three mature sugar maple trees were treated with several types and concentrations of growth regulators. Lack of statistical significance was due to extreme variability in tree response: low levels of auxin stimulated rooting in two study trees, while auxins inhibited rooting in the other tree. It is postulated that variations in rooting...

Dominant clonal Eucalyptus grandis x urophylla trees use water more efficiently

Treesearch

Marina Shinkai Gentil Otto; Robert M. Hubbard; Dan Binkley; Jose Luis Stape

2014-01-01

Wood growth in trees depends on the acquisition of resources, and can vary with tree size leading to a variety of stand dynamics. Typically, larger trees obtain more resources and grow faster than smaller trees, but while light has been addressed more often, few case studies have investigated the contributions of water use and water use efficiency (WUE) within stands...

Surface storage of rainfall in tree crowns: not all trees are equal

Treesearch

E. Gregory McPherson; Q. Xiao; Natalie van Doorn; P. Peper; E. Teach

2017-01-01

Urban forests can be an effective strategy for managing stormwater. The soil that supports tree growth acts like a reservoir that reduces runoff. The tree crown intercepts rainfall on leaves and stems and its evaporation reduces water reaching the ground below. Until now surface storage capacities have been studied only for forest trees. Based on forest research, green...

Crown Release Promotes Faster Diameter Growth of Pole-Size Black Walnut

Treesearch

Robert E. Phares; Robert D. Williams

1971-01-01

Complete crown release more than doubles the diameter growth of pole-size black walnut trees in southern Indiana over a 10-year period. Partially released trees gew about 50 percent more than unreleased trees. The faster growth of the released trees was directly related to increases in crown-area expansion. Most of the study trees produced bole sprouts; however, the...

Early Growth of Black Walnut Trees From Twenty Seed Sources

Treesearch

Calvin F. Bey; John R. Toliver; Paul L. Roth

1971-01-01

Early results of a black walnut cornseed source study conducted in southern Illinois suggest that seed should be collected from local or south-of-local areas. Trees from southern sources grew faster and longer than trees from northern sources. Trees from southern sources flushed slightly earlier and held their leaves longer than trees from northern sources. For the...

Analysis of Market Factors Associatedwith Sales of Cut Natural Christmas Trees

Treesearch

Lawrence D. Garrett

1977-01-01

A study of the market performance of natural Christmas tree retailers in Winston-Salem, North Carolins, revealed that success was strongly related to location in active retail shopping areas. Christmas tree retailers in shopping centers or areas high in retail sales sold more trees, received a higher average price, and had fewer trees left unsold than retailers in...

A method to study response of large trees to different amounts of available soil water

Treesearch

D.H. Marx; Shi-Jean S. Sung; J.S. Cunningham; M.D. Thompson; L.M. White

1995-01-01

A method was developed to manipulate available soil water on large trees by intercepting thrufall with gutters placed under tree canopies and irrigating the intercepted thrufall onto other trees. With this design, trees were exposed for 2 years to either 25% less thrufall, normal thrufall, or 25% additional thrufall.Undercanopy construction in these plots moderately...

A Method to Study Response of Large Trees to Different Amounts of Available Soil Water

Treesearch

Donald H. Marx; Shi-jean S. Sung; James S. Cunningham; Michael D. Thompson; Linda M. White

1995-01-01

A method was developed to manipulate available soil water on large trees by intercepting thrufall with gutters placed under tree canopies and irrigating the intercepted thrufall onto other trees. With this design, trees were exposed for 2 years to either 25 percent less thrufall, normal tbrufall,or 25 percent additional thrufall. Undercanopy construction in these plots...

Equations for predicting diameter, height, crown width, and leaf area of San Joaquin Valley street trees

Treesearch

P.J. Peper; E.G. McPherson; S.M. Mori

2001-01-01

Although the modeling of energy-use reduction, air pollution uptake, rainfall interception, and microclimate modification associated with urban trees depends on data relating diameter at breast height (dbh) , crown height, crown diameter, and leaf area to tree age or dbh, scant information is available for common municipal tree species . I n this study , tree height ,...

Understanding tree growth responses after partial cuttings: A new approach

PubMed Central

Rossi, Sergio; Lussier, Jean-Martin; Walsh, Denis; Morin, Hubert

2017-01-01

Forest ecosystem management heads towards the use of partial cuttings. However, the wide variation in growth response of residual trees remains unexplained, preventing a suitable prediction of forest productivity. The aim of the study was to assess individual growth and identify the driving factors involved in the responses of residual trees. Six study blocks in even-aged black spruce [Picea mariana (Mill.) B.S.P.] stands of the eastern Canadian boreal forest were submitted to experimental shelterwood and seed-tree treatments. Individual-tree models were applied to 1039 trees to analyze their patterns of radial growth during the 10 years after partial cutting by using the nonlinear Schnute function on tree-ring series. The trees exhibited different growth patterns. A sigmoid growth was detected in 32% of trees, mainly in control plots of older stands. Forty-seven percent of trees located in the interior of residual strips showed an S-shape, which was influenced by stand mortality, harvested intensity and dominant height. Individuals showing an exponential pattern produced the greatest radial growth after cutting and were edge trees of younger stands with higher dominant height. A steady growth decline was observed in 4% of trees, represented by the individuals suppressed and insensitive to the treatment. The analyses demonstrated that individual nonlinear models are able to assess the variability in growth within the stand and the factors involved in the occurrence of the different growth patterns, thus improving understanding of the tree responses to partial cutting. This new approach can sustain forest management strategies by defining the best conditions to optimize the growth yield of residual trees. PMID:28222200

Mapping and characterizing selected canopy tree species at the Angkor World Heritage site in Cambodia using aerial data.

PubMed

Singh, Minerva; Evans, Damian; Tan, Boun Suy; Nin, Chan Samean

2015-01-01

At present, there is very limited information on the ecology, distribution, and structure of Cambodia's tree species to warrant suitable conservation measures. The aim of this study was to assess various methods of analysis of aerial imagery for characterization of the forest mensuration variables (i.e., tree height and crown width) of selected tree species found in the forested region around the temples of Angkor Thom, Cambodia. Object-based image analysis (OBIA) was used (using multiresolution segmentation) to delineate individual tree crowns from very-high-resolution (VHR) aerial imagery and light detection and ranging (LiDAR) data. Crown width and tree height values that were extracted using multiresolution segmentation showed a high level of congruence with field-measured values of the trees (Spearman's rho 0.782 and 0.589, respectively). Individual tree crowns that were delineated from aerial imagery using multiresolution segmentation had a high level of segmentation accuracy (69.22%), whereas tree crowns delineated using watershed segmentation underestimated the field-measured tree crown widths. Both spectral angle mapper (SAM) and maximum likelihood (ML) classifications were applied to the aerial imagery for mapping of selected tree species. The latter was found to be more suitable for tree species classification. Individual tree species were identified with high accuracy. Inclusion of textural information further improved species identification, albeit marginally. Our findings suggest that VHR aerial imagery, in conjunction with OBIA-based segmentation methods (such as multiresolution segmentation) and supervised classification techniques are useful for tree species mapping and for studies of the forest mensuration variables.

Mapping and Characterizing Selected Canopy Tree Species at the Angkor World Heritage Site in Cambodia Using Aerial Data

PubMed Central

Singh, Minerva; Evans, Damian; Tan, Boun Suy; Nin, Chan Samean

2015-01-01

At present, there is very limited information on the ecology, distribution, and structure of Cambodia’s tree species to warrant suitable conservation measures. The aim of this study was to assess various methods of analysis of aerial imagery for characterization of the forest mensuration variables (i.e., tree height and crown width) of selected tree species found in the forested region around the temples of Angkor Thom, Cambodia. Object-based image analysis (OBIA) was used (using multiresolution segmentation) to delineate individual tree crowns from very-high-resolution (VHR) aerial imagery and light detection and ranging (LiDAR) data. Crown width and tree height values that were extracted using multiresolution segmentation showed a high level of congruence with field-measured values of the trees (Spearman’s rho 0.782 and 0.589, respectively). Individual tree crowns that were delineated from aerial imagery using multiresolution segmentation had a high level of segmentation accuracy (69.22%), whereas tree crowns delineated using watershed segmentation underestimated the field-measured tree crown widths. Both spectral angle mapper (SAM) and maximum likelihood (ML) classifications were applied to the aerial imagery for mapping of selected tree species. The latter was found to be more suitable for tree species classification. Individual tree species were identified with high accuracy. Inclusion of textural information further improved species identification, albeit marginally. Our findings suggest that VHR aerial imagery, in conjunction with OBIA-based segmentation methods (such as multiresolution segmentation) and supervised classification techniques are useful for tree species mapping and for studies of the forest mensuration variables. PMID:25902148

The effect of trees on preferential flow and soil infiltrability in an agroforestry parkland in semiarid Burkina Faso

NASA Astrophysics Data System (ADS)

Bargués Tobella, A.; Reese, H.; Almaw, A.; Bayala, J.; Malmer, A.; Laudon, H.; Ilstedt, U.

2014-04-01

Water scarcity constrains the livelihoods of millions of people in tropical drylands. Tree planting in these environments is generally discouraged due to the large water consumption by trees, but this view may neglect their potential positive impacts on water availability. The effect of trees on soil hydraulic properties linked to groundwater recharge is poorly understood. In this study, we performed 18 rainfall simulations and tracer experiments in an agroforestry parkland in Burkina Faso to investigate the effect of trees and associated termite mounds on soil infiltrability and preferential flow. The sampling points were distributed in transects each consisting of three positions: (i) under a single tree, (ii) in the middle of an open area, and (iii) under a tree associated with a termite mound. The degree of preferential flow was quantified through parameters based on the dye infiltration patterns, which were analyzed using image analysis of photographs. Our results show that the degree of preferential flow was highest under trees associated with termite mounds, intermediate under single trees, and minimal in the open areas. Tree density also had an influence on the degree of preferential flow, with small open areas having more preferential flow than large ones. Soil infiltrability was higher under single trees than in the open areas or under trees associated with a termite mound. The findings from this study demonstrate that trees have a positive impact on soil hydraulic properties influencing groundwater recharge, and thus such effects must be considered when evaluating the impact of trees on water resources in drylands.

Understanding tree growth responses after partial cuttings: A new approach.

PubMed

Montoro Girona, Miguel; Rossi, Sergio; Lussier, Jean-Martin; Walsh, Denis; Morin, Hubert

2017-01-01

Forest ecosystem management heads towards the use of partial cuttings. However, the wide variation in growth response of residual trees remains unexplained, preventing a suitable prediction of forest productivity. The aim of the study was to assess individual growth and identify the driving factors involved in the responses of residual trees. Six study blocks in even-aged black spruce [Picea mariana (Mill.) B.S.P.] stands of the eastern Canadian boreal forest were submitted to experimental shelterwood and seed-tree treatments. Individual-tree models were applied to 1039 trees to analyze their patterns of radial growth during the 10 years after partial cutting by using the nonlinear Schnute function on tree-ring series. The trees exhibited different growth patterns. A sigmoid growth was detected in 32% of trees, mainly in control plots of older stands. Forty-seven percent of trees located in the interior of residual strips showed an S-shape, which was influenced by stand mortality, harvested intensity and dominant height. Individuals showing an exponential pattern produced the greatest radial growth after cutting and were edge trees of younger stands with higher dominant height. A steady growth decline was observed in 4% of trees, represented by the individuals suppressed and insensitive to the treatment. The analyses demonstrated that individual nonlinear models are able to assess the variability in growth within the stand and the factors involved in the occurrence of the different growth patterns, thus improving understanding of the tree responses to partial cutting. This new approach can sustain forest management strategies by defining the best conditions to optimize the growth yield of residual trees.

Tree Colors: Color Schemes for Tree-Structured Data.

PubMed

Tennekes, Martijn; de Jonge, Edwin

2014-12-01

We present a method to map tree structures to colors from the Hue-Chroma-Luminance color model, which is known for its well balanced perceptual properties. The Tree Colors method can be tuned with several parameters, whose effect on the resulting color schemes is discussed in detail. We provide a free and open source implementation with sensible parameter defaults. Categorical data are very common in statistical graphics, and often these categories form a classification tree. We evaluate applying Tree Colors to tree structured data with a survey on a large group of users from a national statistical institute. Our user study suggests that Tree Colors are useful, not only for improving node-link diagrams, but also for unveiling tree structure in non-hierarchical visualizations.

[Cedrela odorata (Meliaceae) potential for dendrochronological studies in the Selva Central of Perú].

PubMed

Pereyra Espinoza, Manuel Jesús; Inga Guillen, Gaby Janet; Santos Morales, Mariano; Arisméndiz Rodríguez, Rodolfo

2014-06-01

Despite the progress made during the past 20 years, searching dendrochronological potential in tropical and subtropical tree species, tropical dendrochronology, is still in a development stage. The aim of this research was to determine the potential of C. odorata for dendrochronological studies in the Selva Central of Perú. The tree-ring anatomical characteristics were carefully examined and we were able to develop a 215 year (1795-2 009) tree-ring chronology and correlate it with precipitation records. The tree-ring chronology was developed based on 47 series of 27 trees. Tree rings are clearly delimited by large pore diameters in earlywood and small ones in latewood associated with marginal and paratracheal parenchyma. The tree-ring chronology was related to precipitation records from Satipo and significant correlations were found with the previous rainy season and late dry season of the current growth period. Moreover, we found close relationship between tree growth and total precipitations of the hydrological period (December to September) for the interval 1990-2009. These results demonstrate the influence of rainfall at different stages of C. odorata radial growth. The good discrimination of annual rings, strong relationship with precipitation, the wide range and longevity of trees (200 years) make C. odorata a very promising species for dendrochronological studies in tropical and subtropical forest of America.

Seasonally Resolved Oxygen Isotope Paleoclimate Proxy in Tree-Ring Cellulose from the Southeastern U.S.

NASA Astrophysics Data System (ADS)

Miller, D. L.; Mora, C. I.; Grissino-Mayer, H. D.; Mock, C. J.

2004-12-01

Stable isotopes in precipitation reflect changes in climate, moisture source, and extreme events such as tropical cyclones, and an oxygen isotope proxy record of these changes through time and space is preserved in tree-ring cellulose. Extreme climate events such as droughts and hurricanes are formidable natural disasters in the southeastern United States, and considerable efforts have been made to understand factors controlling their frequency, whether natural or anthropogenic. Tree rings offer an unusually well-resolved, dateable record of climate events extending beyond modern or historical (documentary) records. Oxygen isotopes in alpha-cellulose of shallowly-rooted conifers predominately reflect the composition of precipitation. Tropical storm convection results in marked 18O depletion in storm precipitation, to -15‰ relative to source seawater (~0‰ ). The depletion increases towards the eyewall of the cyclone, however, isotopically depleted precipitation may extend outward many 100's of km. Storm water 18O depletion translates to soil water 18O depletion that may persist for many weeks until ameliorated by soil water evaporation. Tree growth during that time will take up the anomalous isotopic compositions. Distinctive earlywood (EW ~March-June) versus latewood (LW ~July-October) growth allows the rings to be resolved at an intra-annual (seasonal) scale. By comparison to average soil water, droughts result in 18O-enriched soil water compositions. Seasonal drought or years of continued drought will be similarly captured in the isotope compositions of tree-ring cellulose. A 227-year (1770-1997) seasonally-resolved record of tropical cyclone and drought activity was obtained from cross-sections of felled slash pines (Pinus elliottii Engelm.) and remnant longleaf pines (Pinus palustris Mill.) from southern Georgia. Interpretations of drought or hurricane events were tested by comparison with recent, detailed meteorological records. The 227-year record reveals most previously established hurricane events, including Florence (1953) and the Great Hurricane of 1780. Newly recognized tropical storms such as 1857 are also evident. Significant seasonal droughts such as 1955, 1927, 1904 and 1896, are observed for southeastern Georgia. Larger-scale climate oscillations appear to overprint the EW and LW isotope series, displaying periods of relatively large or small differences in EW and LW δ 18O values. The oscillations are interpreted to reflect dominant climate modes that influence moisture source or seasonal temperature variation. The tree-ring record potentially extends many centuries. A preliminary record through a portion of the North American "Little Ice Age" (1580-1650) indicates a significant reduction in tropical cyclone activity.

Raccoon (Procyon lotor) diurnal den use within an intensively managed forest in central West Virginia

USGS Publications Warehouse

Owen, Sheldon F.; Berl, Jacob L.; Edwards, John W.; Ford, W. Mark; Wood, Petra Bohall

2015-01-01

Intensive forest management may influence the availability of suitable den sites for large den-seeking species, such as Procyon lotor (Raccoon). As part of a Raccoon ecology study on an industrial forest in the Allegheny Mountains of central West Virginia, we radio-tracked 32 Raccoons to 175 diurnal den sites to determine relative use of dens that included cavity trees, rock dens, log piles, slash piles, and exposed limbs. Patterns of den use significantly differed between sexes and among seasons. Overall, we recorded 58 cavity dens in 12 tree species with 7 maternal dens found in 5 tree species. Raccoons selected larger-diameter den trees than available cavity trees and non-cavity trees. Because the abundance of suitable tree cavities is known to influence Raccoon densities and recruitment at fine spatial scales and female Raccoons in this study used tree cavities as maternal den sites, the continued harvest of large-diameter trees (i.e., those capable of developing den cavities) without replacement may impact Raccoon recruitment within intensively managed forests throughout the central Appalachians.

Tree and shrub expansion over the past 34 years at the tree-line near Abisko, Sweden.

PubMed

Rundqvist, Sara; Hedenås, Henrik; Sandström, Anneli; Emanuelsson, Urban; Eriksson, Håkan; Jonasson, Christer; Callaghan, Terry V

2011-09-01

Shrubs and trees are expected to expand in the sub-Arctic due to global warming. Our study was conducted in Abisko, sub-arctic Sweden. We recorded the change in coverage of shrub and tree species over a 32- to 34-year period, in three 50 x 50 m plots; in the alpine-tree-line ecotone. The cover of shrubs and trees (<3.5 cm diameter at breast height) were estimated during 2009-2010 and compared with historical documentation from 1976 to 1977. Similarly, all tree stems (> or =3.5 cm) were noted and positions determined. There has been a substantial increase of cover of shrubs and trees, particularly dwarf birch (Betula nana), and mountain birch (Betula pubescens ssp. czerepanovii), and an establishment of aspen (Populus tremula). The other species willows (Salix spp.), juniper (Juniperus communis), and rowan (Sorbus aucuparia) revealed inconsistent changes among the plots. Although this study was unable to identify the causes for the change in shrubs and small trees, they are consistent with anticipated changes due to climate change and reduced herbivory.

Mobile carbohydrates in Himalayan treeline trees I. Evidence for carbon gain limitation but not for growth limitation.

PubMed

Li, Mai-He; Xiao, Wen-Fa; Wang, San-Gen; Cheng, Gen-Wei; Cherubini, Paolo; Cai, Xaio-Hu; Liu, Xing-Liang; Wang, Xiao-Dan; Zhu, Wan-Ze

2008-08-01

To test whether the altitudinal distribution of trees is determined by a carbon shortage or an insufficient sugar fraction (sugar:starch ratio) in treeline trees, we studied the status of nonstructural carbohydrates (NSC) and their components (total soluble sugars and starch) in Abies fabri (Mast.) Craib and Picea balfouriana var. hirtella Rehd. et Wils. trees along three elevational gradients, ranging from lower elevations to the alpine treeline, on the eastern edge of the Tibetan Plateau. For comparison, we investigated a low-altitude species (Tsuga yunnanensis (Franch.) Pritz.) which served as a warm-climate reference because it is distributed in closed montane forests below 3100 m a.s.l. in the study area. The carbon status of T. yunnanensis responded to altitude differently from that of the treeline species. At the species level, total NSC was not consistently more abundant in treeline trees than in trees of the same species growing at lower elevations. Thus there was no consistent evidence for carbon limitation of growth in treeline trees. For the three treeline species studied (P. balfouriana and A. fabri in the Kang-Ding Valley and A. fabri in the Mo-Xi Valley), winter NSC concentrations in treeline trees were significantly lower than in lower-elevation trees of the same species, suggesting that, in winter, carbon is limited in treeline trees. However, in no case was there total overwinter depletion of NSC or its components in treeline trees. Treeline and low-altitude species had similar sugar:starch ratios of about three at their upper-elevational limits in April. We conclude that survival and growth of trees at the elevational or latitudinal climate limit depend not only on NSC concentration in perennial tissues, but also on the maintenance of an overwintering sugar:starch ratio greater than three.

Evaluation of growth disturbances of Picea abies (L.) Karst. to disturbances caused by landslide movements

NASA Astrophysics Data System (ADS)

Šilhán, Karel

2017-01-01

Dendrogeomorphic methods are frequently used in landslide analyses. Although methods of landslide dating based on tree rings are well developed, they still indicated many questions. The aim of this study was to evaluate the frequently used theoretical scheme based on the event-response relationship. Seventy-four individuals of Norway spruce (Picea abies (L.) Karst.) exhibiting visible external disturbance, were sampled on the Girová landslide (the largest historical flow-like landslide in the Czech Republic). This landslide reactivated in May 2010, and post-landslide tree growth responses were studied in detail. These growth responses were compared with the intensity and occurrence of visible external tree disturbance: tilted stems, damaged root systems, and decapitation. Twenty-nine trees (39.2%) died within one to four years following the 2010 landslide movement. The trees that died following the landslide movement were significantly younger and displayed significantly greater stem tilting than the live trees. Abrupt growth suppression was a more-frequent response among the dead trees, whereas growth release dominated among the live trees. Only two trees (2.7%) created no reaction wood in response to the landslide movement. Forty-four percent of the trees started to produce reaction wood structure after a delay, which generally spanned one year. Some eccentric growth was evident in the tree rings of the landslide year and was significant in the first years following the landslide movement. Missing rings were observed only on the upper sides of the stems, and no false tree rings were observed. The results confirm the general validity of event-response relationship, nevertheless this study points out the limitations and uncertainties of this generally accepted working scheme.

STUDYING FOREST ROOT SYSTEMS - AN OVERVIEW OF METHODOLOGICAL PROBLEMS

EPA Science Inventory

The study of tree root systems is central to understanding forest ecosystem carbon and nutrient cycles, nutrient and water uptake, C allocation patterns by trees, soil microbial populations, adaptation of trees to stress, soil organic matter production, etc. Methodological probl...