Near-memory data reorganization engine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gokhale, Maya; Lloyd, G. Scott

A memory subsystem package is provided that has processing logic for data reorganization within the memory subsystem package. The processing logic is adapted to reorganize data stored within the memory subsystem package. In some embodiments, the memory subsystem package includes memory units, a memory interconnect, and a data reorganization engine ("DRE"). The data reorganization engine includes a stream interconnect and DRE units including a control processor and a load-store unit. The control processor is adapted to execute instructions to control a data reorganization. The load-store unit is adapted to process data move commands received from the control processor via themore » stream interconnect for loading data from a load memory address of a memory unit and storing data to a store memory address of a memory unit.« less

The Assembled Solar Eclipse Package (ASEP) in Bangka Indonesia during the total solar eclipse on March 9, 2016

NASA Astrophysics Data System (ADS)

Puji Asmoro, Cahyo; Wijaya, Agus Fany Chandra; Dwi Ardi, Nanang; Abdurrohman, Arman; Aria Utama, Judhistira; Sutiadi, Asep; Hikmat; Ramlan Ramalis, Taufik; Suyardi, Bintang

2016-11-01

The Assembled Solar Eclipse Package (ASEP) is not only an integrated apparatus constructed to obtain imaging data during solar eclipse, but also it involved sky brightness and live streaming requirement. Main four parts of ASEP are composed by two imaging data recorders, one high definition video streaming camera, and a sky quality meter instrument (SQM) linked by a personal computer and motorized mounting. The parts are common instruments which are used for education or personal use. The first part is used to capture corona and prominence image during totality. For the second part, video is powerful data in order to educate public through web streaming lively. The last part, SQM is used to confirm our imaging data during obscuration. The perfect prominence picture was obtained by one of the data capture using William-Optics F=388mm with Nikon DSLR D3100. In addition, the diamond ring and corona were recorded by the second imaging tool using Sky Watcher F=910mm with Canon DSLR 60D. The third instrument is the Sony HXR MC5 streaming set to be able to broadcast to public domain area via official website. From the SQM, the value of the darkness during totality is quiet similar as a dawn condition. Finally, ASEP was entirely successful and be able to fulfil our competency as educational researcher in university.

The Venus Balloon Project telemetry processing

NASA Technical Reports Server (NTRS)

Urech, J. M.; Chamarro, A.; Morales, J. L.; Urech, M. A.

1986-01-01

The peculiarities of the Venus Balloon telemetry system required the development of a new methodology for the telemetry processing, since the capabilities of the Deep Space Network (DSN) telemetry system do not include burst processing of short frames with two different bit rates and first bit acquisition. A software package was produced for the non-real time detection, demodulation, and decoding of the telemetry streams obtained from an open loop recording utilizing the DSN spectrum processing subsystem-radio science (DSP-RS). A general description of the resulting software package (DMO-5539-SP) and its adaptability to the real mission's variations is contained.

ELRIS2D: A MATLAB Package for the 2D Inversion of DC Resistivity/IP Data

NASA Astrophysics Data System (ADS)

Akca, Irfan

2016-04-01

ELRIS2D is an open source code written in MATLAB for the two-dimensional inversion of direct current resistivity (DCR) and time domain induced polarization (IP) data. The user interface of the program is designed for functionality and ease of use. All available settings of the program can be reached from the main window. The subsurface is discre-tized using a hybrid mesh generated by the combination of structured and unstructured meshes, which reduces the computational cost of the whole inversion procedure. The inversion routine is based on the smoothness constrained least squares method. In order to verify the program, responses of two test models and field data sets were inverted. The models inverted from the synthetic data sets are consistent with the original test models in both DC resistivity and IP cases. A field data set acquired in an archaeological site is also used for the verification of outcomes of the program in comparison with the excavation results.

Volatilization of organic compounds from streams

USGS Publications Warehouse

Rathburn, R.E.; Tai, D.Y.

1982-01-01

Mass-transfer coefficients for the volatilization of ethylene and propane were correlated with the hydraulic and geometric properties of seven streams, and predictive equations were developed. The equations were evaluated using a normalized root-mean-square error as the criterion of comparison. The two best equations were a two-variable equation containing the energy dissipated per unit mass per unit time and the average depth of flow and a three-variable equation containing the average velocity, the average depth of flow, and the slope of the stream. Procedures for adjusting the ethylene and propane coefficients for other organic compounds were evaluated. These procedures are based on molecular diffusivity, molecular diameter, or molecular weight. Because of limited data, none of these procedures have been extensively verified. Therefore, until additional data become available, it is suggested that the mass-transfer coefficient be assumed to be inversely proportional to the square root of the molecular weight.

A PC-based telemetry system for acquiring and reducing data from multiple PCM streams

NASA Astrophysics Data System (ADS)

Simms, D. A.; Butterfield, C. P.

1991-07-01

The Solar Energy Research Institute's (SERI) Wind Research Program is using Pulse Code Modulation (PCM) Telemetry Data-Acquisition Systems to study horizontal-axis wind turbines. Many PCM systems are combined for use in test installations that require accurate measurements from a variety of different locations. SERI has found them ideal for data-acquisition from multiple wind turbines and meteorological towers in wind parks. A major problem has been in providing the capability to quickly combine and examine incoming data from multiple PCM sources in the field. To solve this problem, SERI has developed a low-cost PC-based PCM Telemetry Data-Reduction System (PC-PCM System) to facilitate quick, in-the-field multiple-channel data analysis. The PC-PCM System consists of two basic components. First, PC-compatible hardware boards are used to decode and combine multiple PCM data streams. Up to four hardware boards can be installed in a single PC, which provides the capability to combine data from four PCM streams directly to PC disk or memory. Each stream can have up to 62 data channels. Second, a software package written for use under DOS was developed to simplify data-acquisition control and management. The software, called the Quick-Look Data Management Program, provides a quick, easy-to-use interface between the PC and multiple PCM data streams. The Quick-Look Data Management Program is a comprehensive menu-driven package used to organize, acquire, process, and display information from incoming PCM data streams. The paper describes both hardware and software aspects of the SERI PC-PCM system, concentrating on features that make it useful in an experiment test environment to quickly examine and verify incoming data from multiple PCM streams. Also discussed are problems and techniques associated with PC-based telemetry data-acquisition, processing, and real-time display.

Economic comparison of two types of automatic water-quality monitors

USGS Publications Warehouse

Katzenbach, Max

1988-01-01

A comparison of the U.S. Geological Survey's minimonitor system with a self-contained, 'package-sensor' system indicates that the package-sensor system requires less servicing time. The U.S. Geological Survey minimonitor is powered by an external battery and is housed in a weatherproof shelter. This instrument measures temperature, specific conductance, dissolved oxygen, and pH by means of sensors with extension cables having underewater connectors; data are recorder in binary coded decimal form on a 16-channel punched-paper-tape recorder that is housed in a shelter. The packaged-sensor system also measures temperature, specific conductanoe,dissolved oxygen, and pH by means of sensors housed in a package that is submerged in the stream. It has an internal power supply, no moving parts, anf does not require a weatherproof shelter; data are stored in solid-state memory. Minimonitors were installed at four sites in Ohio where U.S. Geological Survey flowthrough monitors already were in opertion. Two package-sensor systems also assigned to each site and alternated every 2 weeks. Detailed records were kept of (1) time involved in operation and maintenace of the systems, and (2) equipment problems during the test period, which lasted from October 1985 through September 1986. Equipment costs were not considered in the economic evaluation. Results of the comparisons show that the packaged-sensor system required less time to install, operate, and maintain than the minimonitor system.

A novel chaotic stream cipher and its application to palmprint template protection

NASA Astrophysics Data System (ADS)

Li, Heng-Jian; Zhang, Jia-Shu

2010-04-01

Based on a coupled nonlinear dynamic filter (NDF), a novel chaotic stream cipher is presented in this paper and employed to protect palmprint templates. The chaotic pseudorandom bit generator (PRBG) based on a coupled NDF, which is constructed in an inverse flow, can generate multiple bits at one iteration and satisfy the security requirement of cipher design. Then, the stream cipher is employed to generate cancelable competitive code palmprint biometrics for template protection. The proposed cancelable palmprint authentication system depends on two factors: the palmprint biometric and the password/token. Therefore, the system provides high-confidence and also protects the user's privacy. The experimental results of verification on the Hong Kong PolyU Palmprint Database show that the proposed approach has a large template re-issuance ability and the equal error rate can achieve 0.02%. The performance of the palmprint template protection scheme proves the good practicability and security of the proposed stream cipher.

An efficient sequential strategy for realizing cross-gradient joint inversion: method and its application to 2-D cross borehole seismic traveltime and DC resistivity tomography

NASA Astrophysics Data System (ADS)

Gao, Ji; Zhang, Haijiang

2018-05-01

Cross-gradient joint inversion that enforces structural similarity between different models has been widely utilized in jointly inverting different geophysical data types. However, it is a challenge to combine different geophysical inversion systems with the cross-gradient structural constraint into one joint inversion system because they may differ greatly in the model representation, forward modelling and inversion algorithm. Here we propose a new joint inversion strategy that can avoid this issue. Different models are separately inverted using the existing inversion packages and model structure similarity is only enforced through cross-gradient minimization between two models after each iteration. Although the data fitting and structural similarity enforcing processes are decoupled, our proposed strategy is still able to choose appropriate models to balance the trade-off between geophysical data fitting and structural similarity. This is realized by using model perturbations from separate data inversions to constrain the cross-gradient minimization process. We have tested this new strategy on 2-D cross borehole synthetic seismic traveltime and DC resistivity data sets. Compared to separate geophysical inversions, our proposed joint inversion strategy fits the separate data sets at comparable levels while at the same time resulting in a higher structural similarity between the velocity and resistivity models.

The Modularized Software Package ASKI - Full Waveform Inversion Based on Waveform Sensitivity Kernels Utilizing External Seismic Wave Propagation Codes

NASA Astrophysics Data System (ADS)

Schumacher, F.; Friederich, W.

2015-12-01

We present the modularized software package ASKI which is a flexible and extendable toolbox for seismic full waveform inversion (FWI) as well as sensitivity or resolution analysis operating on the sensitivity matrix. It utilizes established wave propagation codes for solving the forward problem and offers an alternative to the monolithic, unflexible and hard-to-modify codes that have typically been written for solving inverse problems. It is available under the GPL at www.rub.de/aski. The Gauss-Newton FWI method for 3D-heterogeneous elastic earth models is based on waveform sensitivity kernels and can be applied to inverse problems at various spatial scales in both Cartesian and spherical geometries. The kernels are derived in the frequency domain from Born scattering theory as the Fréchet derivatives of linearized full waveform data functionals, quantifying the influence of elastic earth model parameters on the particular waveform data values. As an important innovation, we keep two independent spatial descriptions of the earth model - one for solving the forward problem and one representing the inverted model updates. Thereby we account for the independent needs of spatial model resolution of forward and inverse problem, respectively. Due to pre-integration of the kernels over the (in general much coarser) inversion grid, storage requirements for the sensitivity kernels are dramatically reduced.ASKI can be flexibly extended to other forward codes by providing it with specific interface routines that contain knowledge about forward code-specific file formats and auxiliary information provided by the new forward code. In order to sustain flexibility, the ASKI tools must communicate via file output/input, thus large storage capacities need to be accessible in a convenient way. Storing the complete sensitivity matrix to file, however, permits the scientist full manual control over each step in a customized procedure of sensitivity/resolution analysis and full waveform inversion.

An architecture of entropy decoder, inverse quantiser and predictor for multi-standard video decoding

NASA Astrophysics Data System (ADS)

Liu, Leibo; Chen, Yingjie; Yin, Shouyi; Lei, Hao; He, Guanghui; Wei, Shaojun

2014-07-01

A VLSI architecture for entropy decoder, inverse quantiser and predictor is proposed in this article. This architecture is used for decoding video streams of three standards on a single chip, i.e. H.264/AVC, AVS (China National Audio Video coding Standard) and MPEG2. The proposed scheme is called MPMP (Macro-block-Parallel based Multilevel Pipeline), which is intended to improve the decoding performance to satisfy the real-time requirements while maintaining a reasonable area and power consumption. Several techniques, such as slice level pipeline, MB (Macro-Block) level pipeline, MB level parallel, etc., are adopted. Input and output buffers for the inverse quantiser and predictor are shared by the decoding engines for H.264, AVS and MPEG2, therefore effectively reducing the implementation overhead. Simulation shows that decoding process consumes 512, 435 and 438 clock cycles per MB in H.264, AVS and MPEG2, respectively. Owing to the proposed techniques, the video decoder can support H.264 HP (High Profile) 1920 × 1088@30fps (frame per second) streams, AVS JP (Jizhun Profile) 1920 × 1088@41fps streams and MPEG2 MP (Main Profile) 1920 × 1088@39fps streams when exploiting a 200 MHz working frequency.

Development of FWIGPR, an open-source package for full-waveform inversion of common-offset GPR data

NASA Astrophysics Data System (ADS)

Jazayeri, S.; Kruse, S.

2017-12-01

We introduce a package for full-waveform inversion (FWI) of Ground Penetrating Radar (GPR) data based on a combination of open-source programs. The FWI requires a good starting model, based on direct knowledge of field conditions or on traditional ray-based inversion methods. With a good starting model, the FWI can improve resolution of selected subsurface features. The package will be made available for general use in educational and research activities. The FWIGPR package consists of four main components: 3D to 2D data conversion, source wavelet estimation, forward modeling, and inversion. (These four components additionally require the development, by the user, of a good starting model.) A major challenge with GPR data is the unknown form of the waveform emitted by the transmitter held close to the ground surface. We apply a blind deconvolution method to estimate the source wavelet, based on a sparsity assumption about the reflectivity series of the subsurface model (Gholami and Sacchi 2012). The estimated wavelet is deconvolved from the data and the sparsest reflectivity series with fewest reflectors. The gprMax code (www.gprmax.com) is used as the forward modeling tool and the PEST parameter estimation package (www.pesthomepage.com) for the inversion. To reduce computation time, the field data are converted to an effective 2D equivalent, and the gprMax code can be run in 2D mode. In the first step, the user must create a good starting model of the data, presumably using ray-based methods. This estimated model will be introduced to the FWI process as an initial model. Next, the 3D data is converted to 2D, then the user estimates the source wavelet that best fits the observed data by sparsity assumption of the earth's response. Last, PEST runs gprMax with the initial model and calculates the misfit between the synthetic and observed data, and using an iterative algorithm calling gprMax several times ineach iteration, finds successive models that better fit the data. To gauge whether the iterative process has arrived at a local or global minima, the process can be repeated with a range of starting models. Tests have shown that this package can successfully improve estimates of selected subsurface model parameters for simple synthetic and real data. Ongoing research will focus on FWI of more complex scenarios.

Cross-recurrence quantification analysis of categorical and continuous time series: an R package

PubMed Central

Coco, Moreno I.; Dale, Rick

2014-01-01

This paper describes the R package crqa to perform cross-recurrence quantification analysis of two time series of either a categorical or continuous nature. Streams of behavioral information, from eye movements to linguistic elements, unfold over time. When two people interact, such as in conversation, they often adapt to each other, leading these behavioral levels to exhibit recurrent states. In dialog, for example, interlocutors adapt to each other by exchanging interactive cues: smiles, nods, gestures, choice of words, and so on. In order for us to capture closely the goings-on of dynamic interaction, and uncover the extent of coupling between two individuals, we need to quantify how much recurrence is taking place at these levels. Methods available in crqa would allow researchers in cognitive science to pose such questions as how much are two people recurrent at some level of analysis, what is the characteristic lag time for one person to maximally match another, or whether one person is leading another. First, we set the theoretical ground to understand the difference between “correlation” and “co-visitation” when comparing two time series, using an aggregative or cross-recurrence approach. Then, we describe more formally the principles of cross-recurrence, and show with the current package how to carry out analyses applying them. We end the paper by comparing computational efficiency, and results’ consistency, of crqa R package, with the benchmark MATLAB toolbox crptoolbox (Marwan, 2013). We show perfect comparability between the two libraries on both levels. PMID:25018736

A novel analytical solution for estimating aquifer properties within a horizontally anisotropic aquifer bounded by a stream

NASA Astrophysics Data System (ADS)

Huang, Yibin; Zhan, Hongbin; Knappett, Peter S. K.

2018-04-01

Past studies modeling stream-aquifer interaction commonly account for vertical anisotropy in hydraulic conductivity, but rarely address horizontal anisotropy, which may exist in certain sedimentary environments. If present, horizontal anisotropy will greatly impact stream depletion and the amount of recharge a pumped aquifer captures from the river. This scenario requires a different and somewhat more sophisticated mathematical approach to model and interpret pumping test results than previous models used to describe captured recharge from rivers. In this study, a new mathematical model is developed to describe the spatiotemporal distribution of drawdown from stream-bank pumping with a well screened across a horizontally anisotropic, confined aquifer, laterally bounded by a river. This new model is used to estimate four aquifer parameters including the magnitude and directions of major and minor principal transmissivities and storativity based on the observed drawdown-time curves within a minimum of three non-collinear observation wells. In order to approve the efficacy of the new model, a MATLAB script file is programmed to conduct a four-parameter inversion to estimate the four parameters of concern. By comparing the results of analytical and numerical inversions, the accuracy of estimated results from both inversions is acceptable, but the MATLAB program sometimes becomes problematic because of the difficulty of separating the local minima from the global minima. It appears that the new analytical model of this study is applicable and robust in estimating parameter values for a horizontally anisotropic aquifer laterally bounded by a stream. Besides that, the new model calculates stream depletion rate as a function of stream-bank pumping. Unique to horizontally anisotropic and homogeneous aquifers, the stream depletion rate at any given pumping rate depends closely on the horizontal anisotropy ratio and the direction of the principle transmissivities relative to the stream-bank.

Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection

NASA Astrophysics Data System (ADS)

Keller, Nicholas; Berndsen, Zachary T.; Jardine, Paul J.; Smith, Douglas E.

2017-05-01

We compare forces resisting DNA packaging and forces driving DNA ejection in bacteriophage phi29 with theoretical predictions. Ejection of DNA from prohead-motor complexes is triggered by heating complexes after in vitro packaging and force is inferred from the suppression of ejection by applied osmotic pressure. Ejection force from 0 % to 80 % filling is found to be in quantitative agreement with predictions of a continuum mechanics model that assumes a repulsive DNA-DNA interaction potential based on DNA condensation studies and predicts an inverse-spool conformation. Force resisting DNA packaging from ˜80 % to 100 % filling inferred from optical tweezers studies is also consistent with the predictions of this model. The striking agreement with these two different measurements suggests that the overall energetics of DNA packaging is well described by the model. However, since electron microscopy studies of phi29 do not reveal a spool conformation, our findings suggest that the spool model overestimates the role of bending rigidity and underestimates the role of intrastrand repulsion. Below ˜80 % filling the inferred forces resisting packaging are unexpectedly lower than the inferred ejection forces, suggesting that in this filling range the forces are less accurately determined or strongly temperature dependent.

Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection.

PubMed

Keller, Nicholas; Berndsen, Zachary T; Jardine, Paul J; Smith, Douglas E

2017-05-01

We compare forces resisting DNA packaging and forces driving DNA ejection in bacteriophage phi29 with theoretical predictions. Ejection of DNA from prohead-motor complexes is triggered by heating complexes after in vitro packaging and force is inferred from the suppression of ejection by applied osmotic pressure. Ejection force from 0% to 80% filling is found to be in quantitative agreement with predictions of a continuum mechanics model that assumes a repulsive DNA-DNA interaction potential based on DNA condensation studies and predicts an inverse-spool conformation. Force resisting DNA packaging from ∼80% to 100% filling inferred from optical tweezers studies is also consistent with the predictions of this model. The striking agreement with these two different measurements suggests that the overall energetics of DNA packaging is well described by the model. However, since electron microscopy studies of phi29 do not reveal a spool conformation, our findings suggest that the spool model overestimates the role of bending rigidity and underestimates the role of intrastrand repulsion. Below ∼80% filling the inferred forces resisting packaging are unexpectedly lower than the inferred ejection forces, suggesting that in this filling range the forces are less accurately determined or strongly temperature dependent.

AN ADA LINEAR ALGEBRA PACKAGE MODELED AFTER HAL/S

NASA Technical Reports Server (NTRS)

Klumpp, A. R.

1994-01-01

This package extends the Ada programming language to include linear algebra capabilities similar to those of the HAL/S programming language. The package is designed for avionics applications such as Space Station flight software. In addition to the HAL/S built-in functions, the package incorporates the quaternion functions used in the Shuttle and Galileo projects, and routines from LINPAK that solve systems of equations involving general square matrices. Language conventions in this package follow those of HAL/S to the maximum extent practical and minimize the effort required for writing new avionics software and translating existent software into Ada. Valid numeric types in this package include scalar, vector, matrix, and quaternion declarations. (Quaternions are fourcomponent vectors used in representing motion between two coordinate frames). Single precision and double precision floating point arithmetic is available in addition to the standard double precision integer manipulation. Infix operators are used instead of function calls to define dot products, cross products, quaternion products, and mixed scalar-vector, scalar-matrix, and vector-matrix products. The package contains two generic programs: one for floating point, and one for integer. The actual component type is passed as a formal parameter to the generic linear algebra package. The procedures for solving systems of linear equations defined by general matrices include GEFA, GECO, GESL, and GIDI. The HAL/S functions include ABVAL, UNIT, TRACE, DET, INVERSE, TRANSPOSE, GET, PUT, FETCH, PLACE, and IDENTITY. This package is written in Ada (Version 1.2) for batch execution and is machine independent. The linear algebra software depends on nothing outside the Ada language except for a call to a square root function for floating point scalars (such as SQRT in the DEC VAX MATHLIB library). This program was developed in 1989, and is a copyrighted work with all copyright vested in NASA.

seawaveQ: an R package providing a model and utilities for analyzing trends in chemical concentrations in streams with a seasonal wave (seawave) and adjustment for streamflow (Q) and other ancillary variables

USGS Publications Warehouse

Ryberg, Karen R.; Vecchia, Aldo V.

2013-01-01

The seawaveQ R package fits a parametric regression model (seawaveQ) to pesticide concentration data from streamwater samples to assess variability and trends. The model incorporates the strong seasonality and high degree of censoring common in pesticide data and users can incorporate numerous ancillary variables, such as streamflow anomalies. The model is fitted to pesticide data using maximum likelihood methods for censored data and is robust in terms of pesticide, stream location, and degree of censoring of the concentration data. This R package standardizes this methodology for trend analysis, documents the code, and provides help and tutorial information, as well as providing additional utility functions for plotting pesticide and other chemical concentration data.

An Attached Payload Operations Center (APOC) at the Goddard Space Flight Center (GSFC), volume 2

NASA Technical Reports Server (NTRS)

1983-01-01

An overview of the APOC is given. For Spacelab payloads channel 2 and 3 data are input via a Statistical Multiplexer (SM) to the various SIPS functions. These include recording of the data on High Density Recorders (HDR), DQM and demultiplexing of the composite data stream by the High Rate Demultiplexer (HRDM). This system performs the inverse functions of the onboard Spacelab High Rate Multiplexer (HRM) enabling access to the data streams as multiplexed onboard the Spacelab. The contents and characteristics of channels one, two and three data as downlinked by the Tracking and Data Relay Satellite System (TDRSS) ku-band are given.

Influences of spatial and temporal variation on fish-habitat relationships defined by regression quantiles

Treesearch

Jason B. Dunham; Brian S. Cade; James W. Terrell

2002-01-01

We used regression quantiles to model potentially limiting relationships between the standing crop of cutthroat trout Oncorhynchus clarki and measures of stream channel morphology. Regression quantile models indicated that variation in fish density was inversely related to the width:depth ratio of streams but not to stream width or depth alone. The...

The wide-spread presence of rib-like patterns in basal shear of ice streams detected by surface data inversion

NASA Astrophysics Data System (ADS)

Sergienko, O. V.

2013-12-01

The direct observations of the basal conditions under continental-scale ice sheets are logistically impossible. A possible approach to estimate conditions at the ice - bed interface is from surface observations by means of inverse methods. The recent advances in remote and ground-based observations have allowed to acquire a wealth observations from Greenland and Antarctic ice sheets. Using high-resolution data sets of ice surface and bed elevations and surface velocities, inversions for basal conditions have been performed for several ice streams in Greenland and Antarctica. The inversion results reveal the wide-spread presence of rib-like spatial structures in basal shear. The analysis of the hydraulic potential distribution shows that these rib-like structures co-locate with highs of the gradient of hydraulic potential. This suggests that subglacial water plays a role in the development and evolution of the basal shear ribs.

Spectral characteristics of convolutionally coded digital signals

NASA Technical Reports Server (NTRS)

Divsalar, D.

1979-01-01

The power spectral density of the output symbol sequence of a convolutional encoder is computed for two different input symbol stream source models, namely, an NRZ signaling format and a first order Markov source. In the former, the two signaling states of the binary waveform are not necessarily assumed to occur with equal probability. The effects of alternate symbol inversion on this spectrum are also considered. The mathematical results are illustrated with many examples corresponding to optimal performance codes.

Comparison of accuracy and completeness of data obtained from three types of automatic water-quality monitors

USGS Publications Warehouse

Katzenbach, Max

1990-01-01

A comparison of data (specific conductance, dissolved-oxygen concentration, temperature, and pH) collected by the U.S. Geological Survey flowthrough monitor, the U.S. Geological Survey minimonitor, and a self-contained commercial 'packaged-sensor' system indicates that the data obtained by means of the most complete of the three systems. The U.S. Geological Survey flowthrough monitor is powered by 120-volt alternating current and in a heated weather-proof shelter. A pumping system brings water from the stream to sensors clustered in a sample clustered in a sample chamber located in the shelter. This instrument measures output from the senors; data are recorded in binary-coded decimal form on a 16-channel punched-paper tape recorder tape recorder housed in the shelter. The U.S. Geological Survey's minimonitor is powered by an external battery and is housed in a weatherproof shelter. This instrument measures output of instream sensors with extension cables having underwater connectors; data are recorded in binary-coded decimal form on a 16-channel punched-paper tape recorder housed in the shelter. The packaged-sensor system also measures output of senors housed in a packages that is submerged in the stream. It has internal power supply, no moving parts, and does not requires a weatherproof shelter; data are stored are stored in solid-state memory. Minimonitors were installed at four sites in Ohio where U.S. Geological survey flowthrough were in operation. Two package-sensor systems also were assigned to each site and were alternated every two weeks. Detailed records were kept of (1) field measurements, for comparison with monitor-system data from each instrument, and (2) equipment problems that resulted in loss of data. Results of the comparisons shows that the flow-through monitor gave the most accurate and the most complete data.

The turbomachine blading design using S2-S1 approach

NASA Technical Reports Server (NTRS)

Luu, T. S.; Bencherif, L.; Viney, B.; Duc, J. M. Nguyen

1991-01-01

The boundary conditions corresponding to the design problem when the blades being simulated by the bound vorticity distribution are presented. The 3D flow is analyzed by the two steps S2 - S1 approach. In the first step, the number of blades is supposed to be infinite, the vortex distribution is transformed into an axisymmetric one, so that the flow field can be analyzed in a meridional plane. The thickness distribution of the blade producing the flow channel striction is taken into account by the modification of metric tensor in the continuity equation. Using the meridional stream function to define the flow field, the mass conservation is satisfied automatically. The governing equation is deduced from the relation between the azimuthal component of the vorticity and the meridional velocity. The value of the azimuthal component of the vorticity is provided by the hub to shroud equilibrium condition. This step leads to the determination of the axisymmetric stream sheets as well as the approximate camber surface of the blade. In the second step, the finite number of blades is taken into account, the inverse problem corresponding to the blade to blade flow confined in each stream sheet is analyzed. The momentum equation implies that the free vortex of the absolute velocity must be tangential to the stream sheet. The governing equation for the blade to blade flow stream function is deduced from this condition. At the beginning, the upper and the lower surfaces of the blades are created from the camber surface obtained from the first step with the assigned thickness distribution. The bound vorticity distribution and the penetrating flux conservation applied on the presumed blade surface constitute the boundary conditions of the inverse problem. The detection of this flux leads to the rectification of the geometry of the blades.

Drivers and Spatio-Temporal Extent of Hyporheic Patch Variation: Implications for Sampling

PubMed Central

Braun, Alexander; Auerswald, Karl; Geist, Juergen

2012-01-01

The hyporheic zone in stream ecosystems is a heterogeneous key habitat for species across many taxa. Consequently, it attracts high attention among freshwater scientists, but generally applicable guidelines on sampling strategies are lacking. Thus, the objective of this study was to develop and validate such sampling guidelines. Applying geostatistical analysis, we quantified the spatio-temporal variability of parameters, which characterize the physico-chemical substratum conditions in the hyporheic zone. We investigated eight stream reaches in six small streams that are typical for the majority of temperate areas. Data was collected on two occasions in six stream reaches (development data), and once in two additional reaches, after one year (validation data). In this study, the term spatial variability refers to patch contrast (patch to patch variance) and patch size (spatial extent of a patch). Patch contrast of hyporheic parameters (specific conductance, pH and dissolved oxygen) increased with macrophyte cover (r2 = 0.95, p<0.001), while patch size of hyporheic parameters decreased from 6 to 2 m with increasing sinuosity of the stream course (r2 = 0.91, p<0.001), irrespective of the time of year. Since the spatial variability of hyporheic parameters varied between stream reaches, our results suggest that sampling design should be adapted to suit specific stream reaches. The distance between sampling sites should be inversely related to the sinuosity, while the number of samples should be related to macrophyte cover. PMID:22860053

LIP: The Livermore Interpolation Package, Version 1.4

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fritsch, F N

2011-07-06

This report describes LIP, the Livermore Interpolation Package. Because LIP is a stand-alone version of the interpolation package in the Livermore Equation of State (LEOS) access library, the initials LIP alternatively stand for the 'LEOS Interpolation Package'. LIP was totally rewritten from the package described in [1]. In particular, the independent variables are now referred to as x and y, since the package need not be restricted to equation of state data, which uses variables {rho} (density) and T (temperature). LIP is primarily concerned with the interpolation of two-dimensional data on a rectangular mesh. The interpolation methods provided include piecewisemore » bilinear, reduced (12-term) bicubic, and bicubic Hermite (biherm). There is a monotonicity-preserving variant of the latter, known as bimond. For historical reasons, there is also a biquadratic interpolator, but this option is not recommended for general use. A birational method was added at version 1.3. In addition to direct interpolation of two-dimensional data, LIP includes a facility for inverse interpolation (at present, only in the second independent variable). For completeness, however, the package also supports a compatible one-dimensional interpolation capability. Parametric interpolation of points on a two-dimensional curve can be accomplished by treating the components as a pair of one-dimensional functions with a common independent variable. LIP has an object-oriented design, but it is implemented in ANSI Standard C for efficiency and compatibility with existing applications. First, a 'LIP interpolation object' is created and initialized with the data to be interpolated. Then the interpolation coefficients for the selected method are computed and added to the object. Since version 1.1, LIP has options to instead estimate derivative values or merely store data in the object. (These are referred to as 'partial setup' options.) It is then possible to pass the object to functions that interpolate or invert the interpolant at an arbitrary number of points. The first section of this report describes the overall design of the package, including both forward and inverse interpolation. Sections 2-6 describe each interpolation method in detail. The software that implements this design is summarized function-by-function in Section 7. For a complete example of package usage, refer to Section 8. The report concludes with a few brief notes on possible software enhancements. For guidance on adding other functional forms to LIP, refer to Appendix B. The reader who is primarily interested in using LIP to solve a problem should skim Section 1, then skip to Sections 7.1-4. Finally, jump ahead to Section 8 and study the example. The remaining sections can be referred to in case more details are desired. Changes since version 1.1 of this document include the new Section 3.2.1 that discusses derivative estimation and new Section 6 that discusses the birational interpolation method. Section numbers following the latter have been modified accordingly.« less

LIP: The Livermore Interpolation Package, Version 1.3

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fritsch, F N

2011-01-04

This report describes LIP, the Livermore Interpolation Package. Because LIP is a stand-alone version of the interpolation package in the Livermore Equation of State (LEOS) access library, the initials LIP alternatively stand for the ''LEOS Interpolation Package''. LIP was totally rewritten from the package described in [1]. In particular, the independent variables are now referred to as x and y, since the package need not be restricted to equation of state data, which uses variables {rho} (density) and T (temperature). LIP is primarily concerned with the interpolation of two-dimensional data on a rectangular mesh. The interpolation methods provided include piecewisemore » bilinear, reduced (12-term) bicubic, and bicubic Hermite (biherm). There is a monotonicity-preserving variant of the latter, known as bimond. For historical reasons, there is also a biquadratic interpolator, but this option is not recommended for general use. A birational method was added at version 1.3. In addition to direct interpolation of two-dimensional data, LIP includes a facility for inverse interpolation (at present, only in the second independent variable). For completeness, however, the package also supports a compatible one-dimensional interpolation capability. Parametric interpolation of points on a two-dimensional curve can be accomplished by treating the components as a pair of one-dimensional functions with a common independent variable. LIP has an object-oriented design, but it is implemented in ANSI Standard C for efficiency and compatibility with existing applications. First, a ''LIP interpolation object'' is created and initialized with the data to be interpolated. Then the interpolation coefficients for the selected method are computed and added to the object. Since version 1.1, LIP has options to instead estimate derivative values or merely store data in the object. (These are referred to as ''partial setup'' options.) It is then possible to pass the object to functions that interpolate or invert the interpolant at an arbitrary number of points. The first section of this report describes the overall design of the package, including both forward and inverse interpolation. Sections 2-6 describe each interpolation method in detail. The software that implements this design is summarized function-by-function in Section 7. For a complete example of package usage, refer to Section 8. The report concludes with a few brief notes on possible software enhancements. For guidance on adding other functional forms to LIP, refer to Appendix B. The reader who is primarily interested in using LIP to solve a problem should skim Section 1, then skip to Sections 7.1-4. Finally, jump ahead to Section 8 and study the example. The remaining sections can be referred to in case more details are desired. Changes since version 1.1 of this document include the new Section 3.2.1 that discusses derivative estimation and new Section 6 that discusses the birational interpolation method. Section numbers following the latter have been modified accordingly.« less

SeisFlows-Flexible waveform inversion software

NASA Astrophysics Data System (ADS)

Modrak, Ryan T.; Borisov, Dmitry; Lefebvre, Matthieu; Tromp, Jeroen

2018-06-01

SeisFlows is an open source Python package that provides a customizable waveform inversion workflow and framework for research in oil and gas exploration, earthquake tomography, medical imaging, and other areas. New methods can be rapidly prototyped in SeisFlows by inheriting from default inversion or migration classes, and code can be tested on 2D examples before application to more expensive 3D problems. Wave simulations must be performed using an external software package such as SPECFEM3D. The ability to interface with external solvers lends flexibility, and the choice of SPECFEM3D as a default option provides optional GPU acceleration and other useful capabilities. Through support for massively parallel solvers and interfaces for high-performance computing (HPC) systems, inversions with thousands of seismic traces and billions of model parameters can be performed. So far, SeisFlows has run on clusters managed by the Department of Defense, Chevron Corp., Total S.A., Princeton University, and the University of Alaska, Fairbanks.

The aquamet Package for R: A Tool for Use with the National Rivers and Streams Assessment

EPA Science Inventory

The use of R software in environmental data analysis has become increasingly common because it is very powerful, versatile and available free of charge, with hundreds of contributed add-on packages available that perform almost every conceivable type of analysis or task. The Envi...

Calibrated models as management tools for stream-aquifer systems: the case of central Kansas, USA

NASA Astrophysics Data System (ADS)

Sophocleous, Marios; Perkins, Samuel P.

1993-12-01

We address the problem of declining streamflows in interconnected stream-aquifer systems and explore possible management options to address the problem for two areas of central Kansas: the Arkansas River valley from Kinsley to Great Bend and the lower Rattlesnake Creek-Quivira National Wildlife Refuge area. The approach we followed implements, calibrates, and partially validates for the study areas a stream-aquifer numerical model combined with a parameter estimation package and sensitivity analysis. Hydrologic budgets for both predevelopment and developed conditions indicate significant differences in the hydrologic components of the study areas resulting from development. The predevelopment water budgets give an estimate of natural ground-water recharge, whereas the budgets for developed conditions give an estimate of induced recharge, indicating that major ground-water development changes the recharge-discharge regime of the model areas with time. Such stream-aquifer models serve to link proposed actions to hydrologic effects, as is clearly demonstrated by the effects of various management alternatives on the streamflows of the Arkansas River and Rattlesnake Creek. Thus we show that a possible means of restoring specified streamflows in the area is to implement protective stream corridors with restricted ground-water extraction.

Calibrated models as management tools for stream-aquifer systems: the case of central Kansas, USA

USGS Publications Warehouse

Sophocleous, M.; Perkins, S.P.

1993-01-01

We address the problem of declining streamflows in interconnected stream-aquifer systems and explore possible management options to address the problem for two areas of central Kansas: the Arkansas River valley from Kinsley to Great Bend and the lower Rattlesnake Creek-Quivira National Wildlife Refuge area. The approach we followed implements, calibrates, and partially validates for the study areas a stream-aquifer numerical model combined with a parameter estimation package and sensitivity analysis. Hydrologic budgets for both predevelopment and developed conditions indicate significant differences in the hydrologic components of the study areas resulting from development. The predevelopment water budgets give an estimate of natural ground-water recharge, whereas the budgets for developed conditions give an estimate of induced recharge, indicating that major ground-water development changes the recharge-discharge regime of the model areas with time. Such stream-aquifer models serve to link proposed actions to hydrologic effects, as is clearly demonstrated by the effects of various management alternatives on the streamflows of the Arkansas River and Rattlesnake Creek. Thus we show that a possible means of restoring specified streamflows in the area is to implement protective stream corridors with restricted ground-water extraction. ?? 1993.

Rtop - an R package for interpolation along the stream network

NASA Astrophysics Data System (ADS)

Skøien, J. O.

2009-04-01

Rtop - an R package for interpolation along the stream network Geostatistical methods have been used to a limited extent for estimation along stream networks, with a few exceptions(Gottschalk, 1993; Gottschalk, et al., 2006; Sauquet, et al., 2000; Skøien, et al., 2006). Interpolation of runoff characteristics are more complicated than the traditional random variables estimated by geostatistical methods, as the measurements have a more complicated support, and many catchments are nested. Skøien et al. (2006) presented the model Top-kriging which takes these effects into account for interpolation of stream flow characteristics (exemplified by the 100 year flood). The method has here been implemented as a package in the statistical environment R (R Development Core Team, 2004). Taking advantage of the existing methods in R for working with spatial objects, and the extensive possibilities for visualizing the result, this makes it considerably easier to apply the method on new data sets, in comparison to earlier implementation of the method. Gottschalk, L. 1993. Interpolation of runoff applying objective methods. Stochastic Hydrology and Hydraulics, 7, 269-281. Gottschalk, L., I. Krasovskaia, E. Leblois, and E. Sauquet. 2006. Mapping mean and variance of runoff in a river basin. Hydrology and Earth System Sciences, 10, 469-484. R Development Core Team. 2004. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. Sauquet, E., L. Gottschalk, and E. Leblois. 2000. Mapping average annual runoff: a hierarchical approach applying a stochastic interpolation scheme. Hydrological Sciences Journal, 45 (6), 799-815. Skøien, J. O., R. Merz, and G. Blöschl. 2006. Top-kriging - geostatistics on stream networks. Hydrology and Earth System Sciences, 10, 277-287.

The Islamic State Battle Plan: Press Release Natural Language Processing

DTIC Science & Technology

2016-06-01

Processing, text mining , corpus, generalized linear model, cascade, R Shiny, leaflet, data visualization 15. NUMBER OF PAGES 83 16. PRICE CODE...Terrorism and Responses to Terrorism TDM Term Document Matrix TF Term Frequency TF-IDF Term Frequency-Inverse Document Frequency tm text mining (R...package=leaflet. Feinerer I, Hornik K (2015) Text Mining Package “tm,” Version 0.6-2. (Jul 3) https://cran.r-project.org/web/packages/tm/tm.pdf

POTENTIAL IMPACTS OF ORGANIC WASTES ON SMALL STREAM WATER QUALITY

EPA Science Inventory

We monitored concentrations of dissolved organic carbon (DOC), dissolved oxygen (DO) and other parameters in 17 small streams of the South Fork Broad River (SFBR) watershed on a monthly basis for 15 months. Our monthly monitoring results showed a strong inverse relationship betwe...

FABRICATION AND DEPLOYMENT OF THE 9979 TYPE AF RADIOACTIVE WASTE PACKAGING FOR THE DEPARTMENT OF ENERGY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blanton, P.; Eberl, K.

2013-10-10

This paper summarizes the development, testing, and certification of the 9979 Type A Fissile Packaging that replaces the UN1A2 Specification Shipping Package eliminated from Department of Transportation (DOT) 49 CFR 173. The DOT Specification Package was used for many decades by the U.S. nuclear industry as a fissile waste container until its removal as an authorized container by DOT. This paper will discuss stream lining procurement of high volume radioactive material packaging manufacturing, such as the 9979, to minimize packaging production costs without sacrificing Quality Assurance. The authorized content envelope (combustible and non-combustible) as well as planned content envelope expansionmore » will be discussed.« less

Analysis of groundwater flow and stream depletion in L-shaped fluvial aquifers

NASA Astrophysics Data System (ADS)

Lin, Chao-Chih; Chang, Ya-Chi; Yeh, Hund-Der

2018-04-01

Understanding the head distribution in aquifers is crucial for the evaluation of groundwater resources. This article develops a model for describing flow induced by pumping in an L-shaped fluvial aquifer bounded by impermeable bedrocks and two nearly fully penetrating streams. A similar scenario for numerical studies was reported in Kihm et al. (2007). The water level of the streams is assumed to be linearly varying with distance. The aquifer is divided into two subregions and the continuity conditions of the hydraulic head and flux are imposed at the interface of the subregions. The steady-state solution describing the head distribution for the model without pumping is first developed by the method of separation of variables. The transient solution for the head distribution induced by pumping is then derived based on the steady-state solution as initial condition and the methods of finite Fourier transform and Laplace transform. Moreover, the solution for stream depletion rate (SDR) from each of the two streams is also developed based on the head solution and Darcy's law. Both head and SDR solutions in the real time domain are obtained by a numerical inversion scheme called the Stehfest algorithm. The software MODFLOW is chosen to compare with the proposed head solution for the L-shaped aquifer. The steady-state and transient head distributions within the L-shaped aquifer predicted by the present solution are compared with the numerical simulations and measurement data presented in Kihm et al. (2007).

DOE Office of Scientific and Technical Information (OSTI.GOV)

"rsed" is an R package that contains tools for stream editing: manipulating text files by making insertions, replacements, deletions, substitutions, or commenting. It hails from the powerful Unix command, "sed". While the "rsed" package is not nearly as powerful as "see", it is much simpler to use. R programmers often write scripts that may require simple manipulation of text files. "rsed" addresses that need.

WinXSPRO, a channel cross section analyzer, User's Manual, Version 3.0

Treesearch

Thomas Hardy; Palavi Panja; Dean Mathias

2005-01-01

WinXSPRO is an interactive Windows software package designed to analyze stream channel cross section data for geometric, hydraulic, and sediment transport parameters. WinXSPRO was specifically developed for use in high-gradient streams (gradient > 0.01) and supports four alternative resistance equations for computing boundary roughness and resistance to flow. Cross...

Feeding kinematics and performance of Hawaiian stream gobies, Awaous guamensis and Lentipes concolor: linkage of functional morphology and ecology.

PubMed

Maie, Takashi; Wilson, Megan P; Schoenfuss, Heiko L; Blob, Richard W

2009-03-01

Distributions of Hawaiian stream fishes are typically interrupted by waterfalls that divide streams into multiple segments. Larvae hatch upstream, are flushed into the ocean, and must climb these waterfalls to reach adult habitats when returning back to freshwater as part of an amphidromous life cycle. Stream surveys and studies of climbing performance show that Lentipes concolor Gill can reach fast-flowing upper stream segments but that Awaous guamensis Valenciennes reaches only slower, lower stream segments. Gut content analyses for these two species indicate considerable overlap in diet, suggesting that feeding kinematics and performance of these two species might be comparable. Alternatively, feeding kinematics and performance of these species might be expected to differ in relation to the different flow regimes in their habitat (feeding in faster stream currents for L. concolor versus in slower currents for A. guamensis). To test these alternative hypotheses, we compared food capturing kinematics and performance during suction feeding behaviors of A. guamensis and L. concolor using morphological data and high-speed video. Lentipes concolor showed both a significantly larger gape angle and faster jaw opening than A. guamensis. Geometric models calculated that despite the inverse relationship of gape size and suction pressure generation, the fast jaw motions of L. concolor allow it to achieve higher pressure differentials than A. guamensis. Such elevated suction pressure would enhance the ability of L. concolor to successfully capture food in the fast stream reaches it typically inhabits. Differences in jaw morphology may contribute to these differences in performance, as the lever ratio for jaw opening is about 10% lower in L. concolor compared with A. guamensis, suiting the jaws of L. concolor better for fast opening. Copyright 2008 Wiley-Liss, Inc.

VS2DI: Model use, calibration, and validation

USGS Publications Warehouse

Healy, Richard W.; Essaid, Hedeff I.

2012-01-01

VS2DI is a software package for simulating water, solute, and heat transport through soils or other porous media under conditions of variable saturation. The package contains a graphical preprocessor for constructing simulations, a postprocessor for displaying simulation results, and numerical models that solve for flow and solute transport (VS2DT) and flow and heat transport (VS2DH). Flow is described by the Richards equation, and solute and heat transport are described by advection-dispersion equations; the finite-difference method is used to solve these equations. Problems can be simulated in one, two, or three (assuming radial symmetry) dimensions. This article provides an overview of calibration techniques that have been used with VS2DI; included is a detailed description of calibration procedures used in simulating the interaction between groundwater and a stream fed by drainage from agricultural fields in central Indiana. Brief descriptions of VS2DI and the various types of problems that have been addressed with the software package are also presented.

Cytogenetic analysis of five Hypostomus species (Siluriformes, Loricariidae)

PubMed Central

Martinez, Emanuel Ricardo Monteiro; Zawadzki, Claudio Henrique; Foresti, Fausto; Oliveira, Claudio

2011-01-01

In this work, we analyzed the karyotypes of five Hypostomus species. Hypostomus cf. heraldoi, from the Mogi-Guaçu River, had 2n = 72 chromosomes, with a nucleolar organizer region (NOR) in one chromosomal pair. Hypostomus regani, from the Mogi-Guaçu River had 2n = 72 chromosomes with NORs in two chromosomal pairs. Hypostomus sp., from the Mogi-Guaçu River basin, had 2n = 68 chromosomes, with NORs in two chromosomal pairs. Hypostomus aff. agna, from Cavalo Stream, had 2n = 74 chromosomes with NORs in two chromosomal pairs. Hypostomus cf. topavae, from Carrapato Stream, had 2n = 80 chromosomes, with NORs in two chromosomal pairs. Hypostomus species showed marked diversity in the karyotypic formula, which suggested the occurrence of several Robertsonian rearrangements and pericentric inversions during the evolutionary history of this genus. This hypothesis was supported by the occurrence of a large number of uniarmed chromosomes and multiple NORs in a terminal position in most species and may be a derived condition in the Loricariidae. PMID:22215958

HT2DINV: A 2D forward and inverse code for steady-state and transient hydraulic tomography problems

NASA Astrophysics Data System (ADS)

Soueid Ahmed, A.; Jardani, A.; Revil, A.; Dupont, J. P.

2015-12-01

Hydraulic tomography is a technique used to characterize the spatial heterogeneities of storativity and transmissivity fields. The responses of an aquifer to a source of hydraulic stimulations are used to recover the features of the estimated fields using inverse techniques. We developed a 2D free source Matlab package for performing hydraulic tomography analysis in steady state and transient regimes. The package uses the finite elements method to solve the ground water flow equation for simple or complex geometries accounting for the anisotropy of the material properties. The inverse problem is based on implementing the geostatistical quasi-linear approach of Kitanidis combined with the adjoint-state method to compute the required sensitivity matrices. For undetermined inverse problems, the adjoint-state method provides a faster and more accurate approach for the evaluation of sensitivity matrices compared with the finite differences method. Our methodology is organized in a way that permits the end-user to activate parallel computing in order to reduce the computational burden. Three case studies are investigated demonstrating the robustness and efficiency of our approach for inverting hydraulic parameters.

Advanced Sensor Arrays and Packaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ryter, John Wesley; Romero, Christopher J.; Ramaiyan, Kannan

2016-08-11

Novel sensor packaging elements were designed, fabricated, and tested in order to facilitate the transition of electrochemical mixed-potential sensors toward commercialization. Of the two designs completed, the first is currently undergoing field trials, taking direct measurements within vehicle exhaust streams, while the second is undergoing preliminary laboratory testing. The sensors’ optimal operating conditions, sensitivity to hydrogen, and long-­term baseline stability were also investigated. The sensing capabilities of lanthanum chromite (La 0.8Sr 0.2CrO 3) and indium-­doped tin oxide (ITO) working electrodes were compared, and the ITO devices were selected for pre-­commercial field trials testing at a hydrogen fuel cell vehicle fuelingmore » station in California. Previous data from that fueling station were also analyzed, and the causes of anomalous baseline drift were identified.« less

Discharge of New Subglacial Lake on Whillians Ice Stream: Implication for Ice Stream Flow Dynamics.

NASA Astrophysics Data System (ADS)

Sergienko, O. V.; Fricker, H. A.; Bindschadler, R. A.; Vornberger, P. L.; Macayeal, D. R.

2006-12-01

One of the surprise discoveries made possible by the ICESat laser altimeter mission of 2004-2006 is the presence of a large subglacial lake below the grounding zone of Whillians Ice Stream (dubbed here `Lake Helen' after the discoverer, Helen Fricker). What is even more surprising is the fact that this lake discharged a substantial portion of its volume during the ICESat mission, and changes in lake volume and surface elevation of the ice stream are documented in exquisite detail [Fricker et al., in press]. The presence and apparent dynamism of large subglacial lakes in the grounding zone of a major ice stream raises questions about their effects on ice-stream dynamics. Being liquid and movable, water modifies basal friction spatially and temporally. Melting due to shear heating and geothermal flux reduces basal traction, making the ice stream move fast. However, when water collects in a depression to form a lake, it potentially deprives the surrounding bed of lubricating water, and additionally makes the ice surface flat, thereby locally decreasing the ice stream driving stress. We study the effect of formation and discharge of a subglacial lake at the mouth of and ice stream using a two dimensional, vertically integrated, ice-stream model. The model is forced by the basal friction, ice thickness and surface elevation. The basal friction is obtained by inversion of the ice surface velocity, ice thickness and surface elevation come from observations. To simulate the lake formation we introduce zero basal friction and "inflate" the basal elevation of the ice stream at the site of the lake. Sensitivity studies of the response of the surrounding ice stream and ice shelf flow are performed to delineate the influence of near-grounding-line subglacial water storage for ice streams in general.

Final Report: Efficient Databases for MPC Microdata

DOE Office of Scientific and Technical Information (OSTI.GOV)

Michael A. Bender; Martin Farach-Colton; Bradley C. Kuszmaul

2011-08-31

The purpose of this grant was to develop the theory and practice of high-performance databases for massive streamed datasets. Over the last three years, we have developed fast indexing technology, that is, technology for rapidly ingesting data and storing that data so that it can be efficiently queried and analyzed. During this project we developed the technology so that high-bandwidth data streams can be indexed and queried efficiently. Our technology has been proven to work data sets composed of tens of billions of rows when the data streams arrives at over 40,000 rows per second. We achieved these numbers evenmore » on a single disk driven by two cores. Our work comprised (1) new write-optimized data structures with better asymptotic complexity than traditional structures, (2) implementation, and (3) benchmarking. We furthermore developed a prototype of TokuFS, a middleware layer that can handle microdata I/O packaged up in an MPI-IO abstraction.« less

Computation of records of streamflow at control structures

USGS Publications Warehouse

Collins, Dannie L.

1977-01-01

Traditional methods of computing streamflow records on large, low-gradient streams require a continuous record of water-surface slope over a natural channel reach. This slope must be of sufficient magnitude to be accuratly measured with available stage measuring devices. On highly regulated streams, this slope approaches zero during periods of low flow and accurate measurement is difficult. Methods are described to calibrate multipurpose regulating control structures to more accurately compute streamflow records on highly-regulated streams. Hydraulic theory, assuming steady, uniform flow during a computational interval, is described for five different types of flow control. The controls are: Tainter gates, hydraulic turbines, fixed spillways, navigation locks, and crest gates. Detailed calibration procedures are described for the five different controls as well as for several flow regimes for some of the controls. The instrumentation package and computer programs necessary to collect and process the field data are discussed. Two typical calibration procedures and measurement data are presented to illustrate the accuracy of the methods. (Woodard-USGS)

Recovery, reuse and recycling by the United States wood packaging industry: 1993-2006

Treesearch

Robert J. Bush; Philip A. Araman; E. Bradley Hager

2007-01-01

The packaging industry is an important market for wood materials, especially low grade hardwoods. Approximately one-third of U.S. hardwood lumber production is utilized in the production of pallets and containers. The industry recovers significant volumes of pallets and containers from the waste stream for re-use, repair, and recycling. Industry by-products (both wood...

JPARSS: A Java Parallel Network Package for Grid Computing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Jie; Akers, Walter; Chen, Ying

2002-03-01

The emergence of high speed wide area networks makes grid computinga reality. However grid applications that need reliable data transfer still have difficulties to achieve optimal TCP performance due to network tuning of TCP window size to improve bandwidth and to reduce latency on a high speed wide area network. This paper presents a Java package called JPARSS (Java Parallel Secure Stream (Socket)) that divides data into partitions that are sent over several parallel Java streams simultaneously and allows Java or Web applications to achieve optimal TCP performance in a grid environment without the necessity of tuning TCP window size.more » This package enables single sign-on, certificate delegation and secure or plain-text data transfer using several security components based on X.509 certificate and SSL. Several experiments will be presented to show that using Java parallelstreams is more effective than tuning TCP window size. In addition a simple architecture using Web services« less

Streamflow loss quantification for groundwater flow modeling using a wading-rod-mounted acoustic Doppler current profiler in a headwater stream

NASA Astrophysics Data System (ADS)

Pflügl, Christian; Hoehn, Philipp; Hofmann, Thilo

2017-04-01

Irrespective of the availability of various field measurement and modeling approaches, the quantification of interactions between surface water and groundwater systems remains associated with high uncertainty. Such uncertainties on stream-aquifer interaction have a high potential to misinterpret the local water budget and water quality significantly. Due to typically considerable temporal variation of stream discharge rates, it is desirable for the measurement of streamflow to reduce the measuring duration while reducing uncertainty. Streamflow measurements, according to the velocity-area method, have been performed along reaches of a losing-disconnected, subalpine headwater stream using a 2-dimensional, wading-rod-mounted acoustic Doppler current profiler (ADCP). The method was chosen, with stream morphology not allowing for boat-mounted setups, to reduce uncertainty compared to conventional, single-point streamflow measurements of similar measurement duration. Reach-averaged stream loss rates were subsequently quantified between 12 cross sections. They enabled the delineation of strongly infiltrating stream reaches and their differentiation from insignificantly infiltrating reaches. Furthermore, a total of 10 near-stream observation wells were constructed and/or equipped with pressure and temperature loggers. The time series of near-stream groundwater temperature data were cross-correlated with stream temperature time series to yield supportive qualitative information on the delineation of infiltrating reaches. Subsequently, as a reference parameterization, the hydraulic conductivity and specific yield of a numerical, steady-state model of groundwater flow, in the unconfined glaciofluvial aquifer adjacent to the stream, were inversely determined incorporating the inferred stream loss rates. Applying synthetic sets of infiltration rates, resembling increasing levels of uncertainty associated with single-point streamflow measurements of comparable duration, the same inversion procedure was run. The volume-weighted mean of the respective parameter distribution within 200 m of stream periphery deviated increasingly from the reference parameterization at increasing deviation of infiltration rates.

Fire Streams. Fire Service Certification Series. Unit FSCS-FF-10-80.

ERIC Educational Resources Information Center

Pribyl, Paul F.

This training unit on fire streams is part of a 17-unit course package written to aid instructors in the development, teaching, and evaluation of fire fighters in the Wisconsin Fire Service Certification Series. The purpose stated for the 8-hour unit is to provide the fire fighters with an understanding of the characteristics, use, and application…

Lessons Learned in the Design and Use of IP1 / IP2 Flexible Packaging - 13621

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanchez, Mike; Reeves, Wendall; Smart, Bill

2013-07-01

For many years in the USA, Low Level Radioactive Waste (LLW), contaminated soils and construction debris, have been transported, interim stored, and disposed of, using IP1 / IP2 metal containers. The performance of these containers has been more than adequate, with few safety occurrences. The containers are used under the regulatory oversight of the US Department of Transportation (DOT), 49 Code of Federal Regulations (CFR). In the late 90's the introduction of flexible packaging for the transport, storage, and disposal of low level contaminated soils and construction debris was introduced. The development of flexible packaging came out of a needmore » for a more cost effective package, for the large volumes of waste generated by the decommissioning of many of the US Department of Energy (DOE) legacy sites across the US. Flexible packaging had to be designed to handle a wide array of waste streams, including soil, gravel, construction debris, and fine particulate dust migration. The design also had to meet all of the IP1 requirements under 49CFR 173.410, and be robust enough to pass the IP2 testing 49 CFR 173.465 required for many LLW shipments. Tens of thousands of flexible packages have been safely deployed and used across the US nuclear industry as well as for hazardous non-radioactive applications, with no recorded release of radioactive materials. To ensure that flexible packages are designed properly, the manufacturer must use lessons learned over the years, and the tests performed to provide evidence that these packages are suitable for transporting low level radioactive wastes. The design and testing of flexible packaging for LLW, VLLW and other hazardous waste streams must be as strict and stringent as the design and testing of metal containers. The design should take into consideration the materials being loaded into the package, and should incorporate the right materials, and manufacturing methods, to provide a quality, safe product. Flexible packaging can be shown to meet the criteria for safe and fit for purpose packaging, by meeting the US DOT regulations, and the IAEA Standards for IP-1 and IP-2 including leak tightness. (authors)« less

Automating calibration, sensitivity and uncertainty analysis of complex models using the R package Flexible Modeling Environment (FME): SWAT as an example

USGS Publications Warehouse

Wu, Y.; Liu, S.

2012-01-01

Parameter optimization and uncertainty issues are a great challenge for the application of large environmental models like the Soil and Water Assessment Tool (SWAT), which is a physically-based hydrological model for simulating water and nutrient cycles at the watershed scale. In this study, we present a comprehensive modeling environment for SWAT, including automated calibration, and sensitivity and uncertainty analysis capabilities through integration with the R package Flexible Modeling Environment (FME). To address challenges (e.g., calling the model in R and transferring variables between Fortran and R) in developing such a two-language coupling framework, 1) we converted the Fortran-based SWAT model to an R function (R-SWAT) using the RFortran platform, and alternatively 2) we compiled SWAT as a Dynamic Link Library (DLL). We then wrapped SWAT (via R-SWAT) with FME to perform complex applications including parameter identifiability, inverse modeling, and sensitivity and uncertainty analysis in the R environment. The final R-SWAT-FME framework has the following key functionalities: automatic initialization of R, running Fortran-based SWAT and R commands in parallel, transferring parameters and model output between SWAT and R, and inverse modeling with visualization. To examine this framework and demonstrate how it works, a case study simulating streamflow in the Cedar River Basin in Iowa in the United Sates was used, and we compared it with the built-in auto-calibration tool of SWAT in parameter optimization. Results indicate that both methods performed well and similarly in searching a set of optimal parameters. Nonetheless, the R-SWAT-FME is more attractive due to its instant visualization, and potential to take advantage of other R packages (e.g., inverse modeling and statistical graphics). The methods presented in the paper are readily adaptable to other model applications that require capability for automated calibration, and sensitivity and uncertainty analysis.

Evaluation of trade-offs in costs and environmental impacts for returnable packaging implementation

NASA Astrophysics Data System (ADS)

Jarupan, Lerpong; Kamarthi, Sagar V.; Gupta, Surendra M.

2004-02-01

The main thrust of returnable packaging these days is to provide logistical services through transportation and distribution of products and be environmentally friendly. Returnable packaging and reverse logistics concepts have converged to mitigate the adverse effect of packaging materials entering the solid waste stream. Returnable packaging must be designed by considering the trade-offs between costs and environmental impact to satisfy manufacturers and environmentalists alike. The cost of returnable packaging entails such items as materials, manufacturing, collection, storage and disposal. Environmental impacts are explicitly linked with solid waste, air pollution, and water pollution. This paper presents a multi-criteria evaluation technique to assist decision-makers for evaluating the trade-offs in costs and environmental impact during the returnable packaging design process. The proposed evaluation technique involves a combination of multiple objective integer linear programming and analytic hierarchy process. A numerical example is used to illustrate the methodology.

Accommodating Chromosome Inversions in Linkage Analysis

PubMed Central

Chen, Gary K.; Slaten, Erin; Ophoff, Roel A.; Lange, Kenneth

2006-01-01

This work develops a population-genetics model for polymorphic chromosome inversions. The model precisely describes how an inversion changes the nature of and approach to linkage equilibrium. The work also describes algorithms and software for allele-frequency estimation and linkage analysis in the presence of an inversion. The linkage algorithms implemented in the software package Mendel estimate recombination parameters and calculate the posterior probability that each pedigree member carries the inversion. Application of Mendel to eight Centre d'Étude du Polymorphisme Humain pedigrees in a region containing a common inversion on 8p23 illustrates its potential for providing more-precise estimates of the location of an unmapped marker or trait gene. Our expanded cytogenetic analysis of these families further identifies inversion carriers and increases the evidence of linkage. PMID:16826515

Modelling stream aquifer seepage in an alluvial aquifer: an improved loosing-stream package for MODFLOW

NASA Astrophysics Data System (ADS)

Osman, Yassin Z.; Bruen, Michael P.

2002-07-01

Seepage from a stream, which partially penetrates an unconfined alluvial aquifer, is studied for the case when the water table falls below the streambed level. Inadequacies are identified in current modelling approaches to this situation. A simple and improved method of incorporating such seepage into groundwater models is presented. This considers the effect on seepage flow of suction in the unsaturated part of the aquifer below a disconnected stream and allows for the variation of seepage with water table fluctuations. The suggested technique is incorporated into the saturated code MODFLOW and is tested by comparing its predictions with those of a widely used variably saturated model, SWMS_2D simulating water flow and solute transport in two-dimensional variably saturated media. Comparisons are made of both seepage flows and local mounding of the water table. The suggested technique compares very well with the results of variably saturated model simulations. Most currently used approaches are shown to underestimate the seepage and associated local water table mounding, sometimes substantially. The proposed method is simple, easy to implement and requires only a small amount of additional data about the aquifer hydraulic properties.

Delivering Unidata Technology via the Cloud

NASA Astrophysics Data System (ADS)

Fisher, Ward; Oxelson Ganter, Jennifer

2016-04-01

Over the last two years, Docker has emerged as the clear leader in open-source containerization. Containerization technology provides a means by which software can be pre-configured and packaged into a single unit, i.e. a container. This container can then be easily deployed either on local or remote systems. Containerization is particularly advantageous when moving software into the cloud, as it simplifies the process. Unidata is adopting containerization as part of our commitment to migrate our technologies to the cloud. We are using a two-pronged approach in this endeavor. In addition to migrating our data-portal services to a cloud environment, we are also exploring new and novel ways to use cloud-specific technology to serve our community. This effort has resulted in several new cloud/Docker-specific projects at Unidata: "CloudStream," "CloudIDV," and "CloudControl." CloudStream is a docker-based technology stack for bringing legacy desktop software to new computing environments, without the need to invest significant engineering/development resources. CloudStream helps make it easier to run existing software in a cloud environment via a technology called "Application Streaming." CloudIDV is a CloudStream-based implementation of the Unidata Integrated Data Viewer (IDV). CloudIDV serves as a practical example of application streaming, and demonstrates how traditional software can be easily accessed and controlled via a web browser. Finally, CloudControl is a web-based dashboard which provides administrative controls for running docker-based technologies in the cloud, as well as providing user management. In this work we will give an overview of these three open-source technologies and the value they offer to our community.

Waste Generator Instructions: Key to Successful Implementation of the US DOE's 435.1 for Transuranic Waste Packaging Instructions (LA-UR-12-24155) - 13218

DOE Office of Scientific and Technical Information (OSTI.GOV)

French, David M.; Hayes, Timothy A.; Pope, Howard L.

In times of continuing fiscal constraints, a management and operation tool that is straightforward to implement, works as advertised, and virtually ensures compliant waste packaging should be carefully considered and employed wherever practicable. In the near future, the Department of Energy (DOE) will issue the first major update to DOE Order 435.1, Radioactive Waste Management. This update will contain a requirement for sites that do not have a Waste Isolation Pilot Plant (WIPP) waste certification program to use two newly developed technical standards: Contact-Handled Defense Transuranic Waste Packaging Instructions and Remote-Handled Defense Transuranic Waste Packaging Instructions. The technical standards aremore » being developed from the DOE O 435.1 Notice, Contact-Handled and Remote-Handled Transuranic Waste Packaging, approved August 2011. The packaging instructions will provide detailed information and instruction for packaging almost every conceivable type of transuranic (TRU) waste for disposal at WIPP. While providing specificity, the packaging instructions leave to each site's own discretion the actual mechanics of how those Instructions will be functionally implemented at the floor level. While the Technical Standards are designed to provide precise information for compliant packaging, the density of the information in the packaging instructions necessitates a type of Rosetta Stone that translates the requirements into concise, clear, easy to use and operationally practical recipes that are waste stream and facility specific for use by both first line management and hands-on operations personnel. The Waste Generator Instructions provide the operator with step-by-step instructions that will integrate the sites' various operational requirements (e.g., health and safety limits, radiological limits or dose limits) and result in a WIPP certifiable waste and package that can be transported to and emplaced at WIPP. These little known but widely productive Waste Generator Instructions (WGIs) have been used occasionally in the past at large sites for treatment and packaging of TRU waste. The WGIs have resulted in highly efficient waste treatment, packaging and certification for disposal of TRU waste at WIPP. For example, a single WGI at LANL, combined with an increase in gram loading, resulted in a mind boggling 6,400% increase in waste loading for {sup 238}Pu heat source waste. In fact, the WGI combined with a new Contact Handled (CH) TRU Waste Content (TRUCON) Code provided a massive increase in shippable wattage per Transuranic Package Transporter-II (TRUPACT-II) over the previously used and more restrictive TRUCON Code that have been used previously for the heat source waste. In fact, the use of the WGI process at LANL's TA-55 facility reduced non-compliant drums for WIPP certification and disposal from a 13% failure rate down to a 0.5% failure rate and is expected to further reduce the failure rate to zero drums per year. The inherent value of the WGI is that it can be implemented in a site's current procedure issuance process and it provides documented proof of what actions were taken for each waste stream packaged. The WGI protocol provides a key floor-level operational component to achieve goal alignment between actual site operations, the WIPP TRU waste packaging instructions, and DOE O 435.1. (authors)« less

Inverse design of near unity efficiency perfectly vertical grating couplers

NASA Astrophysics Data System (ADS)

Michaels, Andrew; Yablonovitch, Eli

2018-02-01

Efficient coupling between integrated optical waveguides and optical fibers is essential to the success of integrated photonics. While many solutions exist, perfectly vertical grating couplers which scatter light out of a waveguide in the direction normal to the waveguide's top surface are an ideal candidate due to their potential to reduce packaging complexity. Designing such couplers with high efficiency, however, has proven difficult. In this paper, we use electromagnetic inverse design techniques to optimize a high efficiency two-layer perfectly vertical silicon grating coupler. Our base design achieves a chip-to-fiber coupling efficiency of over 99% (-0.04 dB) at 1550 nm. Using this base design, we apply subsequent constrained optimizations to achieve vertical couplers with over 96% efficiency which are fabricable using a 65 nm process.

Identifying relationships between baseflow geochemistry and land use with synoptic sampling and R-Mode factor analysis

USGS Publications Warehouse

Wayland, Karen G.; Long, David T.; Hyndman, David W.; Pijanowski, Bryan C.; Woodhams, Sarah M.; Haak, Sheridan K.

2003-01-01

The relationship between land use and stream chemistry is often explored through synoptic sampling rivers at baseflow condition. However, base flow chemistry is likely to vary temporally and spatially with land use. The purpose of our study is to examine the usefulness of the synoptic sampling approach for identifying the relationship between complex land use configurations and stream water quality. This study compares biogeochemical data from three synoptic sampling events representing the temporal variability of baseflow chemistry and land use using R-mode factor analysis. Separate R-mode factor analyses of the data from individual sampling events yielded only two consistent factors. Agricultural activity was associated with elevated levels of Ca2+, Mg2+, alkalinity, and frequently K+, SO42-, and NO3-. Urban areas were associated with higher concentrations of Na+, K+, and Cl-. Other retained factors were not  consistent among sampling events, and some factors were difficult to interpret in the context of biogeochemical sources and processes. When all data were combined, further associations were revealed such as an inverse relationship between the proportion of wetlands and stream nitrate concentrations. We also found that barren lands were associated with elevated sulfate levels. This research suggests that an individual sampling event is unlikely to characterize adequately the complex processes controlling interactions between land uses and stream chemistry. Combining data collected over two years during three synoptic sampling events appears to enhance our ability to understand processes linking stream chemistry and land use.  

Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection

PubMed Central

Keller, Nicholas; Berndsen, Zachary T.; Jardine, Paul J.; Smith, Douglas E.

2018-01-01

We compare forces resisting DNA packaging in bacteriophage phi29 inferred from optical tweezers studies with forces driving DNA ejection inferred from osmotic pressure studies. Ejection forces from 0–80% filling are consistent with a model that assumes a repulsive DNA-DNA interaction potential derived from DNA condensation studies and predicts an inverse spool DNA conformation. Forces resisting packaging from ~80–100% filling are also consistent with this model. However, that electron microscopy does not reveal a spool conformation suggests that this model overestimates bending rigidity and underestimates repulsion. Below 80% filling, inferred ejection forces are higher than those resisting packaging. Although unexpected, this suggests that most force that builds during packaging is available to drive DNA ejection. PMID:28618627

4DCAPTURE: a general purpose software package for capturing and analyzing two- and three-dimensional motion data acquired from video sequences

NASA Astrophysics Data System (ADS)

Walton, James S.; Hodgson, Peter; Hallamasek, Karen; Palmer, Jake

2003-07-01

4DVideo is creating a general purpose capability for capturing and analyzing kinematic data from video sequences in near real-time. The core element of this capability is a software package designed for the PC platform. The software ("4DCapture") is designed to capture and manipulate customized AVI files that can contain a variety of synchronized data streams -- including audio, video, centroid locations -- and signals acquired from more traditional sources (such as accelerometers and strain gauges.) The code includes simultaneous capture or playback of multiple video streams, and linear editing of the images (together with the ancilliary data embedded in the files). Corresponding landmarks seen from two or more views are matched automatically, and photogrammetric algorithms permit multiple landmarks to be tracked in two- and three-dimensions -- with or without lens calibrations. Trajectory data can be processed within the main application or they can be exported to a spreadsheet where they can be processed or passed along to a more sophisticated, stand-alone, data analysis application. Previous attempts to develop such applications for high-speed imaging have been limited in their scope, or by the complexity of the application itself. 4DVideo has devised a friendly ("FlowStack") user interface that assists the end-user to capture and treat image sequences in a natural progression. 4DCapture employs the AVI 2.0 standard and DirectX technology which effectively eliminates the file size limitations found in older applications. In early tests, 4DVideo has streamed three RS-170 video sources to disk for more than an hour without loss of data. At this time, the software can acquire video sequences in three ways: (1) directly, from up to three hard-wired cameras supplying RS-170 (monochrome) signals; (2) directly, from a single camera or video recorder supplying an NTSC (color) signal; and (3) by importing existing video streams in the AVI 1.0 or AVI 2.0 formats. The latter is particularly useful for high-speed applications where the raw images are often captured and stored by the camera before being downloaded. Provision has been made to synchronize data acquired from any combination of these video sources using audio and visual "tags." Additional "front-ends," designed for digital cameras, are anticipated.

PAD_AUDIT -- PAD Auditing Package

NASA Astrophysics Data System (ADS)

Clayton, C. A.

The PAD (Packet Assembler Disassembler) utility is the part of the VAX/VMS Coloured Book Software (CBS) which allows a user to log onto remote computers from a local VAX. Unfortunately, logging into a computer via either the Packet SwitchStream (PSS) or the International Packet SwitchStream (IPSS) costs real money. Some users either do not appreciate this or do not care and have been known to clock up rather large quarterly bills. This software package allows a system manager to determine who has used PAD to call where and (most importantly) how much it has cost. The system manager can then take appropriate action - either charging the individuals, warning them to use the facility with more care or even denying access to a greedy user to one or more sites.

Correcting Classifiers for Sample Selection Bias in Two-Phase Case-Control Studies

PubMed Central

Theis, Fabian J.

2017-01-01

Epidemiological studies often utilize stratified data in which rare outcomes or exposures are artificially enriched. This design can increase precision in association tests but distorts predictions when applying classifiers on nonstratified data. Several methods correct for this so-called sample selection bias, but their performance remains unclear especially for machine learning classifiers. With an emphasis on two-phase case-control studies, we aim to assess which corrections to perform in which setting and to obtain methods suitable for machine learning techniques, especially the random forest. We propose two new resampling-based methods to resemble the original data and covariance structure: stochastic inverse-probability oversampling and parametric inverse-probability bagging. We compare all techniques for the random forest and other classifiers, both theoretically and on simulated and real data. Empirical results show that the random forest profits from only the parametric inverse-probability bagging proposed by us. For other classifiers, correction is mostly advantageous, and methods perform uniformly. We discuss consequences of inappropriate distribution assumptions and reason for different behaviors between the random forest and other classifiers. In conclusion, we provide guidance for choosing correction methods when training classifiers on biased samples. For random forests, our method outperforms state-of-the-art procedures if distribution assumptions are roughly fulfilled. We provide our implementation in the R package sambia. PMID:29312464

Prospects for application of post-consumer used plastics in food packaging.

PubMed

Miltz, J; Ram, A; Nir, M M

1997-01-01

The two most widely used polymers in packaging in recent years are polyethylene terephthalate (PET) and polyethylene (PE). The biggest fractions of these polymers are not re-utilized, in spite of the fact that they possess excellent properties even after their first application. The ban on using recycled polymers in food packaging applications and the lack of good value outlets for these materials causes them to end up in landfills. The high cost nylon, used in packaging primarily as high gas barrier laminates with PE, also finds its way to landfills. In this case, the reason is the difficulty of recycling different polymers that are incompatible. Thus, the Municipal Solid Waste (MSW) stream transferred to landfills contains many plastic packages. These packages are being blamed as a major pollutant of the environment in spite of the fact that all plastics contribute only a small percentage to the weight of the garbage in landfills. If proper and cost effective applications for the recycled polymers could be developed, the waste related to their disposal could be limited. In addition, the contribution of plastic packages to the environmental problem could be diminished. In the present paper, the possibility of sandwiching a contaminated PET layer between two layers of the virgin material was studied. The aim of the study was to determine whether such an operation could lower the migration level of contaminants from a multilayer structure (containing a recycled layer of PET) to values below the limits required by regulatory agencies. The diffusion coefficients (required to determine migration) of four organic liquids in PET were determined. As a result of the sandwiching operation, the amount of pollutant (toluene) migrating into the food simulant was reduced by two orders of magnitude. The properties of PE/nylon blends were also studied. It was found that the high gas barrier properties of nylon are preserved in the blend when proper processing conditions are used. Therefore, the recycled material could be used as a centre layer in a multilayer structure providing good gas barrier properties to this structure.

Design and reliability analysis of high-speed and continuous data recording system based on disk array

NASA Astrophysics Data System (ADS)

Jiang, Changlong; Ma, Cheng; He, Ning; Zhang, Xugang; Wang, Chongyang; Jia, Huibo

2002-12-01

In many real-time fields the sustained high-speed data recording system is required. This paper proposes a high-speed and sustained data recording system based on the complex-RAID 3+0. The system consists of Array Controller Module (ACM), String Controller Module (SCM) and Main Controller Module (MCM). ACM implemented by an FPGA chip is used to split the high-speed incoming data stream into several lower-speed streams and generate one parity code stream synchronously. It also can inversely recover the original data stream while reading. SCMs record lower-speed streams from the ACM into the SCSI disk drivers. In the SCM, the dual-page buffer technology is adopted to implement speed-matching function and satisfy the need of sustainable recording. MCM monitors the whole system, controls ACM and SCMs to realize the data stripping, reconstruction, and recovery functions. The method of how to determine the system scale is presented. At the end, two new ways Floating Parity Group (FPG) and full 2D-Parity Group (full 2D-PG) are proposed to improve the system reliability and compared with the Traditional Parity Group (TPG). This recording system can be used conveniently in many areas of data recording, storing, playback and remote backup with its high-reliability.

Identification of polymorphic inversions from genotypes

PubMed Central

2012-01-01

Background Polymorphic inversions are a source of genetic variability with a direct impact on recombination frequencies. Given the difficulty of their experimental study, computational methods have been developed to infer their existence in a large number of individuals using genome-wide data of nucleotide variation. Methods based on haplotype tagging of known inversions attempt to classify individuals as having a normal or inverted allele. Other methods that measure differences between linkage disequilibrium attempt to identify regions with inversions but unable to classify subjects accurately, an essential requirement for association studies. Results We present a novel method to both identify polymorphic inversions from genome-wide genotype data and classify individuals as containing a normal or inverted allele. Our method, a generalization of a published method for haplotype data [1], utilizes linkage between groups of SNPs to partition a set of individuals into normal and inverted subpopulations. We employ a sliding window scan to identify regions likely to have an inversion, and accumulation of evidence from neighboring SNPs is used to accurately determine the inversion status of each subject. Further, our approach detects inversions directly from genotype data, thus increasing its usability to current genome-wide association studies (GWAS). Conclusions We demonstrate the accuracy of our method to detect inversions and classify individuals on principled-simulated genotypes, produced by the evolution of an inversion event within a coalescent model [2]. We applied our method to real genotype data from HapMap Phase III to characterize the inversion status of two known inversions within the regions 17q21 and 8p23 across 1184 individuals. Finally, we scan the full genomes of the European Origin (CEU) and Yoruba (YRI) HapMap samples. We find population-based evidence for 9 out of 15 well-established autosomic inversions, and for 52 regions previously predicted by independent experimental methods in ten (9+1) individuals [3,4]. We provide efficient implementations of both genotype and haplotype methods as a unified R package inveRsion. PMID:22321652

Magnetic thermometry in the aseptic processing of foods containing particulates (abstract)

NASA Astrophysics Data System (ADS)

Ghiron, Kenneth; Litchfield, Bruce

1997-04-01

Aseptic processing of foods has many advantages over canning, including higher efficiency, lighter packaging, better taste, and higher nutritional value. Aseptic processing is different from canning where the food and container are sterilized together. Instead, a thin stream of food is heated and the packaging is independently sterilized before the food is placed in the package. However, no aseptic processes have been successfully filed with the FDA for foods containing sizable solid particles because of uncertainties in the thermal sterilization of the particles (e.g., soup). We have demonstrated that by inserting small paramagnetic particles in the interior of the simulated and real food particles, the local temperature can be measured. With this information, any questions about the adequate sterilization of the particles can be resolved. The measurements were done by directing the food stream through a magnetic field and sensing the voltages induced in a pickup coil by the motion of the magnetized particles. Details of the equipment design and data analysis will be discussed along with an introduction to the aseptic processing of foods.

PLA coated paper containing active inorganic nanoparticles: Material characterization and fate of nanoparticles in the paper recycling process.

PubMed

Zhang, Hai; Bussini, Daniele; Hortal, Mercedes; Elegir, Graziano; Mendes, Joana; Jordá Beneyto, Maria

2016-06-01

For paper and paperboard packaging, recyclability plays an important role in conserving the resources and reducing the environmental impacts. Therefore, when it comes to the nano-enabled paper packaging material, the recyclability issue should be properly addressed. This study represents our first report on the fate of nanomaterials in paper recycling process. The packaging material of concern is a PLA (Polylactic Acid) coated paper incorporating zinc oxide nanoparticles in the coating layer. The material was characterised and assessed in a lab-scale paper recycling line. The recyclability test was based on a method adapted from ATICELCA MC501-13, which enabled to recover over 99% of the solids material. The mass balance result indicates that 86-91% zinc oxide nanoparticles ended up in the rejected material stream, mostly embedded within the polymer coating; whereas 7-16% nanoparticles ended up in the accepted material stream. Besides, the tensile strength of the recycled handsheets suggests that the nano-enabled coating had no negative impacts on the recovered fibre quality. Copyright © 2016 Elsevier Ltd. All rights reserved.

Euler Calculations at Off-Design Conditions for an Inlet of Inward Turning RBCC-SSTO Vehicle

NASA Technical Reports Server (NTRS)

Takashima, N.; Kothari, A. P.

1998-01-01

The inviscid performance of an inward turning inlet design is calculated computationally for the first time. Hypersonic vehicle designs based on the inward turning inlets have been shown analytically to have increased effective specific impulse and lower heat load than comparably designed vehicles with two-dimensional inlets. The inward turning inlets are designed inversely from inviscid stream surfaces of known flow fields. The computational study is performed on a Mach 12 inlet design to validate the performance predicted by the design code (HAVDAC) and calculate its off-design Mach number performance. The three-dimensional Euler equations are solved for Mach 4, 8, and 12 using a software package called SAM, which consists of an unstructured mesh generator (SAMmesh), a three-dimensional unstructured mesh flow solver (SAMcfd), and a CAD-based software (SAMcad). The computed momentum averaged inlet throat pressure is within 6% of the design inlet throat pressure. The mass-flux at the inlet throat is also within 7 % of the value predicted by the design code thereby validating the accuracy of the design code. The off-design Mach number results show that flow spillage is minimal, and the variation in the mass capture ratio with Mach number is comparable to an ideal 2-D inlet. The results from the inviscid flow calculations of a Mach 12 inward turning inlet indicate that the inlet design has very good on and off-design performance which makes it a promising design candidate for future air-breathing hypersonic vehicles.

GEOPAC

USGS Publications Warehouse

Godson, Richard H.

1974-01-01

GEOPAC .consists of a series of subroutines to primarily process potential-field geophysical data but other types of data can also be used with the program. The package contains routines to reduce, store, process and display information in two-dimensional or three-dimensional form. Input and output formats are standardized and temporary disk storage permits data sets to be processed by several subroutines in one job step. The subroutines are link-edited in an overlay mode to form one program and they can be executed by submitting a card containing the subroutine name in the input stream.

Prevention policies addressing packaging and packaging waste: Some emerging trends.

PubMed

Tencati, Antonio; Pogutz, Stefano; Moda, Beatrice; Brambilla, Matteo; Cacia, Claudia

2016-10-01

Packaging waste is a major issue in several countries. Representing in industrialized countries around 30-35% of municipal solid waste yearly generated, this waste stream has steadily grown over the years even if, especially in Europe, specific recycling and recovery targets have been fixed. Therefore, an increasing attention starts to be devoted to prevention measures and interventions. Filling a gap in the current literature, this explorative paper is a first attempt to map the increasingly important phenomenon of prevention policies in the packaging sector. Through a theoretical sampling, 11 countries/states (7 in and 4 outside Europe) have been selected and analyzed by gathering and studying primary and secondary data. Results show evidence of three specific trends in packaging waste prevention policies: fostering the adoption of measures directed at improving packaging design and production through an extensive use of the life cycle assessment; raising the awareness of final consumers by increasing the accountability of firms; promoting collaborative efforts along the packaging supply chains. Copyright © 2016 Elsevier Ltd. All rights reserved.

The pattern of acropetal and basipetal cytoplasmic streaming velocities in Chara rhizoids and protonemata, and gravity effect on the pattern as measured by laser-Doppler-velocimetry.

PubMed

Ackers, D; Buchen, B; Hejnowicz, Z; Sievers, A

2000-06-01

The spatial pattern of acropetal and basipetal cytoplasmic streaming velocities has been studied by laser-Doppler-velocimetry (LDV) in the positively gravitropic (downward growing) rhizoids of Chara globularis Thuill. and for the first time in the negatively gravitropic (upward growing) protonemata. The LDV method proved to be precise and yielded reproducible results even when tiny differences in velocities were measured. In the apical parts of the streaming regions of both cell types, acropetal streaming was faster than basipetal streaming. Starting at the apical reversal point of streaming, the velocity increased basipetally with the distance from that point and became fairly constant close to the basal reversal point; subsequently, the velocity decreased slightly acropetally as the apical reversal point was again approached. There was no change in velocity at the basal reversal point. However, at the apical reversal point there was an abrupt decrease in velocity. The pattern of the ratio of acropetal to basipetal streaming velocity (VR) was a function of the relative distance of the site of measurement from the apical reversal point rather than a function of the absolute distance. Upon inversion of the rhizoids, the VR decreased on average by 3.8% (+/- 0.4%), indicating that the effect of gravity on the streaming velocity was merely physical and without a physiological amplification. Rhizoids that had developed on the slowly rotating horizontal axis of a clinostat, and had never experienced a constant gravity vector, were similar to normally grown rhizoids with respect to VR pattern. In protonemata, the VR pattern was not significantly different from that in rhizoids although the direction of growth was inverse. In rhizoids, oryzalin caused the polar organization of the cell to disappear and nullified the differences in streaming velocities, and cytochalasin D decreased the velocity of basipetal streaming slightly more than that of acropetal streaming. Cyclopiazonic acid, known as an inhibitor of the Ca2+-ATPase of the endoplasmic reticulum, also reduced the streaming velocities in rhizoids, but had slightly more effect on the acropetal stream. It is possible that the endogenous difference in streaming velocities in both rhizoids and protonemata is caused by differences in the cytoskeletal organization of the opposing streams and/or loading of inhibitors (like Ca2+) from the apical/subapical zone into the basipetally streaming endoplasm.

Highly-optimized TWSM software package for seismic diffraction modeling adapted for GPU-cluster

NASA Astrophysics Data System (ADS)

Zyatkov, Nikolay; Ayzenberg, Alena; Aizenberg, Arkady

2015-04-01

Oil producing companies concern to increase resolution capability of seismic data for complex oil-and-gas bearing deposits connected with salt domes, basalt traps, reefs, lenses, etc. Known methods of seismic wave theory define shape of hydrocarbon accumulation with nonsufficient resolution, since they do not account for multiple diffractions explicitly. We elaborate alternative seismic wave theory in terms of operators of propagation in layers and reflection-transmission at curved interfaces. Approximation of this theory is realized in the seismic frequency range as the Tip-Wave Superposition Method (TWSM). TWSM based on the operator theory allows to evaluate of wavefield in bounded domains/layers with geometrical shadow zones (in nature it can be: salt domes, basalt traps, reefs, lenses, etc.) accounting for so-called cascade diffraction. Cascade diffraction includes edge waves from sharp edges, creeping waves near concave parts of interfaces, waves of the whispering galleries near convex parts of interfaces, etc. The basic algorithm of TWSM package is based on multiplication of large-size matrices (make hundreds of terabytes in size). We use advanced information technologies for effective realization of numerical procedures of the TWSM. In particular, we actively use NVIDIA CUDA technology and GPU accelerators allowing to significantly improve the performance of the TWSM software package, that is important in using it for direct and inverse problems. The accuracy, stability and efficiency of the algorithm are justified by numerical examples with curved interfaces. TWSM package and its separate components can be used in different modeling tasks such as planning of acquisition systems, physical interpretation of laboratory modeling, modeling of individual waves of different types and in some inverse tasks such as imaging in case of laterally inhomogeneous overburden, AVO inversion.

Direct NOE simulation from long MD trajectories.

PubMed

Chalmers, G; Glushka, J N; Foley, B L; Woods, R J; Prestegard, J H

2016-04-01

A software package, MD2NOE, is presented which calculates Nuclear Overhauser Effect (NOE) build-up curves directly from molecular dynamics (MD) trajectories. It differs from traditional approaches in that it calculates correlation functions directly from the trajectory instead of extracting inverse sixth power distance terms as an intermediate step in calculating NOEs. This is particularly important for molecules that sample conformational states on a timescale similar to molecular reorientation. The package is tested on sucrose and results are shown to differ in small but significant ways from those calculated using an inverse sixth power assumption. Results are also compared to experiment and found to be in reasonable agreement despite an expected underestimation of water viscosity by the water model selected. Copyright © 2016 Elsevier Inc. All rights reserved.

Electrostatic plasma simulation by Particle-In-Cell method using ANACONDA package

NASA Astrophysics Data System (ADS)

Blandón, J. S.; Grisales, J. P.; Riascos, H.

2017-06-01

Electrostatic plasma is the most representative and basic case in plasma physics field. One of its main characteristics is its ideal behavior, since it is assumed be in thermal equilibrium state. Through this assumption, it is possible to study various complex phenomena such as plasma oscillations, waves, instabilities or damping. Likewise, computational simulation of this specific plasma is the first step to analyze physics mechanisms on plasmas, which are not at equilibrium state, and hence plasma is not ideal. Particle-In-Cell (PIC) method is widely used because of its precision for this kind of cases. This work, presents PIC method implementation to simulate electrostatic plasma by Python, using ANACONDA packages. The code has been corroborated comparing previous theoretical results for three specific phenomena in cold plasmas: oscillations, Two-Stream instability (TSI) and Landau Damping(LD). Finally, parameters and results are discussed.

Streaming fragment assignment for real-time analysis of sequencing experiments

PubMed Central

Roberts, Adam; Pachter, Lior

2013-01-01

We present eXpress, a software package for highly efficient probabilistic assignment of ambiguously mapping sequenced fragments. eXpress uses a streaming algorithm with linear run time and constant memory use. It can determine abundances of sequenced molecules in real time, and can be applied to ChIP-seq, metagenomics and other large-scale sequencing data. We demonstrate its use on RNA-seq data, showing greater efficiency than other quantification methods. PMID:23160280

Determination of stream reaeration coefficients by use of tracers

USGS Publications Warehouse

Kilpatrick, F.A.; Rathbun, R.E.; Yotsukura, N.; Parker, G.W.; DeLong, L.L.

1987-01-01

Stream reaeration is the physical absorption of oxygen from the atmosphere by a flowing stream. This is the primary process by which a stream replenishes the oxygen consumed in the biodegradation of organic wastes.Prior to 1965, reaeration rate coefficients could be estimated only by indirect methods. In 1965, a direct method of measuring stream reaeration coefficients was developed in which a radioactive tracer gas was injected into a stream--the tracer gas being desorbed from the stream inversely to how oxygen would be absorbed. The technique has since been modified by substituting hydrocarbon gases for the radioactive tracer gas.This manual describes the slug-injection and constant-rate injection methods of performing gas-tracer desorption measurements. Emphasis is on the use of rhodamine WT dye as a relatively conservative tracer and propane as the nonconservative gas tracer, on planning field tests, methods of injection, sampling and analysis, and computational techniques to compute desorption and reaeration coefficients.

Distribution of model uncertainty across multiple data streams

NASA Astrophysics Data System (ADS)

Wutzler, Thomas

2014-05-01

When confronting biogeochemical models with a diversity of observational data streams, we are faced with the problem of weighing the data streams. Without weighing or multiple blocked cost functions, model uncertainty is allocated to the sparse data streams and possible bias in processes that are strongly constraint is exported to processes that are constrained by sparse data streams only. In this study we propose an approach that aims at making model uncertainty a factor of observations uncertainty, that is constant over all data streams. Further we propose an implementation based on Monte-Carlo Markov chain sampling combined with simulated annealing that is able to determine this variance factor. The method is exemplified both with very simple models, artificial data and with an inversion of the DALEC ecosystem carbon model against multiple observations of Howland forest. We argue that the presented approach is able to help and maybe resolve the problem of bias export to sparse data streams.

Fish community dynamics following dam removal in a fragmented agricultural stream

USGS Publications Warehouse

Kornis, Matthew; Weidel, Brian C.; Powers, Stephens; Diebel, Matthew W.; Cline, Timpthy; Fox, Justin; Kitchell, James F.

2014-01-01

Habitat fragmentation impedes dispersal of aquatic fauna, and barrier removal is increasingly used to increase stream network connectivity and facilitate fish dispersal. Improved understanding of fish community response to barrier removal is needed, especially in fragmented agricultural streams where numerous antiquated dams are likely destined for removal. We examined post-removal responses in two distinct fish communities formerly separated by a small aging mill dam. The dam was removed midway through the 6 year study, enabling passage for downstream fishes affiliated with a connected reservoir into previously inaccessible habitat, thus creating the potential for taxonomic homogenization between upstream and downstream communities. Both communities changed substantially post-removal. Two previously excluded species (white sucker, yellow perch) established substantial populations upstream of the former dam, contributing to a doubling of total fish biomass. Meanwhile, numerical density of pre-existing upstream fishes declined. Downstream, largemouth bass density was inversely correlated with prey fish density throughout the study, while post-removal declines in bluegill density coincided with cooler water temperature and increased suspended and benthic fine sediment. Upstream and downstream fish communities became more similar post-removal, represented by a shift in Bray-Curtis index from 14 to 41 % similarity. Our findings emphasize that barrier removal in highly fragmented stream networks can facilitate the unintended and possibly undesirable spread of species into headwater streams, including dispersal of species from remaining reservoirs. We suggest that knowledge of dispersal patterns for key piscivore and competitor species in both the target system and neighboring systems may help predict community outcomes following barrier removal.

Analysis of multi drug resistant tuberculosis (MDR-TB) financial protection policy: MDR-TB health insurance schemes, in Chhattisgarh state, India.

PubMed

Kundu, Debashish; Sharma, Nandini; Chadha, Sarabjit; Laokri, Samia; Awungafac, George; Jiang, Lai; Asaria, Miqdad

2018-01-27

There are significant financial barriers to access treatment for multi drug resistant tuberculosis (MDR-TB) in India. To address these challenges, Chhattisgarh state in India has established a MDR-TB financial protection policy by creating MDR-TB benefit packages as part of the universal health insurance scheme that the state has rolled out in their effort towards attaining Universal Health Coverage for all its residents. In these schemes the state purchases health insurance against set packages of services from third party health insurance agencies on behalf of all its residents. Provider payment reform by strategic purchasing through output based payments (lump sum fee is reimbursed as per the MDR-TB benefit package rates) to the providers - both public and private health facilities empanelled under the insurance scheme was the key intervention. To understand the implementation gap between policy and practice of the benefit packages with respect to equity in utilization of package claims by the poor patients in public and private sector. Data from primary health insurance claims from January 2013 to December 2015, were analysed using an extension of 'Kingdon's multiple streams for policy implementation framework' to explain the implementation gap between policy and practice of the MDR-TB benefit packages. The total number of claims for MDR-TB benefit packages increased over the study period mainly from poor patients treated in public facilities, particularly for the pre-treatment evaluation and hospital stay packages. Variations and inequities in utilizing the packages were observed between poor and non-poor beneficiaries in public and private sector. Private providers participation in the new MDR-TB financial protection mechanism through the universal health insurance scheme was observed to be much lower than might be expected given their share of healthcare provision overall in India. Our findings suggest that there may be an implementation gap due to weak coupling between the problem and the policy streams, reflecting weak coordination between state nodal agency and the state TB department. There is a pressing need to build strong institutional capacity of the public and private sector for improving service delivery to MDR-TB patients through this new health insurance mechanism.

Various Approaches to Forward and Inverse Wide-Angle Seismic Modelling Tested on Data from DOBRE-4 Experiment

NASA Astrophysics Data System (ADS)

Janik, Tomasz; Środa, Piotr; Czuba, Wojciech; Lysynchuk, Dmytro

2016-12-01

The interpretation of seismic refraction and wide angle reflection data usually involves the creation of a velocity model based on an inverse or forward modelling of the travel times of crustal and mantle phases using the ray theory approach. The modelling codes differ in terms of model parameterization, data used for modelling, regularization of the result, etc. It is helpful to know the capabilities, advantages and limitations of the code used compared to others. This work compares some popular 2D seismic modelling codes using the dataset collected along the seismic wide-angle profile DOBRE-4, where quite peculiar/uncommon reflected phases were observed in the wavefield. The 505 km long profile was realized in southern Ukraine in 2009, using 13 shot points and 230 recording stations. Double PMP phases with a different reduced time (7.5-11 s) and a different apparent velocity, intersecting each other, are observed in the seismic wavefield. This is the most striking feature of the data. They are interpreted as reflections from strongly dipping Moho segments with an opposite dip. Two steps were used for the modelling. In the previous work by Starostenko et al. (2013), the trial-and-error forward model based on refracted and reflected phases (SEIS83 code) was published. The interesting feature is the high-amplitude (8-17 km) variability of the Moho depth in the form of downward and upward bends. This model is compared with results from other seismic inversion methods: the first arrivals tomography package FAST based on first arrivals; the JIVE3D code, which can also use later refracted arrivals and reflections; and the forward and inversion code RAYINVR using both refracted and reflected phases. Modelling with all the codes tested showed substantial variability of the Moho depth along the DOBRE-4 profile. However, SEIS83 and RAYINVR packages seem to give the most coincident results.

Comprehensive seismic monitoring of the Cascadia megathrust with real-time GPS

NASA Astrophysics Data System (ADS)

Melbourne, T. I.; Szeliga, W. M.; Santillan, V. M.; Scrivner, C. W.; Webb, F.

2013-12-01

We have developed a comprehensive real-time GPS-based seismic monitoring system for the Cascadia subduction zone based on 1- and 5-second point position estimates computed within the ITRF08 reference frame. A Kalman filter stream editor that uses a geometry-free combination of phase and range observables to speed convergence while also producing independent estimation of carrier phase biases and ionosphere delay pre-cleans raw satellite measurements. These are then analyzed with GIPSY-OASIS using satellite clock and orbit corrections streamed continuously from the International GNSS Service (IGS) and the German Aerospace Center (DLR). The resulting RMS position scatter is less than 3 cm, and typical latencies are under 2 seconds. Currently 31 coastal Washington, Oregon, and northern California stations from the combined PANGA and PBO networks are analyzed. We are now ramping up to include all of the remaining 400+ stations currently operating throughout the Cascadia subduction zone, all of which are high-rate and telemetered in real-time to CWU. These receivers span the M9 megathrust, M7 crustal faults beneath population centers, several active Cascades volcanoes, and a host of other hazard sources. To use the point position streams for seismic monitoring, we have developed an inter-process client communication package that captures, buffers and re-broadcasts real-time positions and covariances to a variety of seismic estimation routines running on distributed hardware. An aggregator ingests, re-streams and can rebroadcast up to 24 hours of point-positions and resultant seismic estimates derived from the point positions to application clients distributed across web. A suite of seismic monitoring applications has also been written, which includes position time series analysis, instantaneous displacement vectors, and peak ground displacement contouring and mapping. We have also implemented a continuous estimation of finite-fault slip along the Cascadia megathrust using a NIF-type approach. This currently operates on the terrestrial GPS data streams, but could readily be expanded to use real-time offshore geodetic measurements as well. The continuous slip distributions are used in turn to compute tsunami excitation and, when convolved with pre-computed, hydrodynamic Green functions calculated using the COMCOT tsunami modeling software, run-up estimates for the entire Cascadia coastal margin. Finally, a suite of data visualization tools has been written to allow interaction with the real-time position streams and seismic estimates based on them, including time series plotting, instantaneous offset vectors, peak ground deformation contouring, finite-fault inversions, and tsunami run-up. This suite is currently bundled within a single client written in JAVA, called ';GPS Cockpit,' which is available for download.

Pilot Study on the Applicability of Variance Reduction Techniques to the Simulation of a Stochastic Combat Model

DTIC Science & Technology

1987-09-01

inverse transform method to obtain unit-mean exponential random variables, where Vi is the jth random number in the sequence of a stream of uniform random...numbers. The inverse transform method is discussed in the simulation textbooks listed in the reference section of this thesis. X(b,c,d) = - P(b,c,d...Defender ,C * P(b,c,d) We again use the inverse transform method to obtain the conditions for an interim event to occur and to induce the change in

Effects of land use on the water quality and biota of three streams in the Piedmont province of North Carolina

USGS Publications Warehouse

Crawford, J.K.; Lenat, D.R.

1989-01-01

Three small streams in North Carolina 's northern Piedmont were studied to compare the effects of land use in their watersheds on water quality characteristics and aquatic biota. Devil 's Cradle Creek (agricultural watershed) had more than two times the sediment yield of Smith Creek (forested watershed) (0.34 tons/acre compared to 0.13 tons/acre), and Marsh Creek (urban watershed) had more than four times the yield of Smith Creek (0.59 tons/acre). Concentrations of nutrients were consistently highest in Devil 's Craddle Creek. Concentrations of total copper, iron, and lead in samples from each of the three streams at times exceeded State water quality standards as did concentrations of total zinc in samples from both Smith and Marsh Creeks. Successively lower aquatic invertebrate taxa richness was found in the forested, the agricultural, and the urban watershed streams. Invertebrate biota in Smith Creek was dominated by insects, such as Ephemeroptera, that are intolerant to stress from pollution, whereas Devil 's Cradle Creek was dominated by the more tolerant Diptera, and Marsh Creek was dominated by the most pollution-tolerant group, the Oligochaeta. Fish communities in the forested and agricultural watershed streams were characterized by more species and more individuals of each species, relative to a limited community in urban Marsh Creek. Three independent variables closely linked to land use--suspended-sediment yield, suspended-sediment load, and total lead concentrations in stream water--are inversely associated with the biological communities of the streams.

Changes in streambed sediment characteristics and solute transport in the headwaters of Valley Creek, an urbanizing watershed

NASA Astrophysics Data System (ADS)

Ryan, Robert J.; Packman, Aaron I.

2006-05-01

Changes in streambed sediments were monitored in conjunction with Q series of conservative solute tracer injections over a 2-year period to assess the effects of urbanization on two streams in the Valley Creek watershed, located in Chester County, Pennsylvania approximately 30 km west of Philadelphia. The modeling package OTIS was used to analyze the solute transport behavior. Comparison of the results from the two streams demonstrates that the fine sediment fraction of the streambed controls hydraulic conductivity and transient storage exchange in this gravel- and cobble-bed Piedmont system. One site had a narrow (10-40 m) riparian corridor of mowed lawn and woody brush. At this site, the silt-clay fraction ( d<50 μm) of the fine sediment ( d<2 mm) increased from 6 to 25% during the course of the study. The relationship between sediment characteristics and transient storage exchange was evaluated using the method of Wörman et al. [Wörman, A., Packman, A.I., Johansson, H., Jonsson, K., 2002a. Effect of flow-induced exchange in hyporheic zones on longitudinal transport of solutes in streams and rivers. Water Resources Research 38. doi: 10.1029/2001WR000769], who showed that the hyporheic residence time, scaled by the hydraulic conductivity and stream depth, is a function of stream velocity and physical channel characteristics. This analysis indicated that the observed change in fine sediment composition caused a two-fold reduction in the hydraulic conductivity, a four-fold reduction in the transient storage area, and an order of magnitude reduction in the exchange coefficient. The second study site had a wide (100-300 m) riparian corridor of deciduous forest. During the study period, a parcel of woodland encompassing 11% of the drainage area was cleared and nine homes were constructed on the site. Despite this prominent development of the watershed, there was no significant change in sediment characteristics or solute transport during the study period. The model-derived transient storage exchange parameters in our urbanizing study sites were found to be statistically similar to the values for forested mountain streams given in the literature. Thus, the relationship between urbanization and transient storage should be determined by examining the temporal change in the characteristics of individual stream reaches rather than by comparing the solute transport parameters obtained in different types of streams.

A new approach to integrate GPU-based Monte Carlo simulation into inverse treatment plan optimization for proton therapy.

PubMed

Li, Yongbao; Tian, Zhen; Song, Ting; Wu, Zhaoxia; Liu, Yaqiang; Jiang, Steve; Jia, Xun

2017-01-07

Monte Carlo (MC)-based spot dose calculation is highly desired for inverse treatment planning in proton therapy because of its accuracy. Recent studies on biological optimization have also indicated the use of MC methods to compute relevant quantities of interest, e.g. linear energy transfer. Although GPU-based MC engines have been developed to address inverse optimization problems, their efficiency still needs to be improved. Also, the use of a large number of GPUs in MC calculation is not favorable for clinical applications. The previously proposed adaptive particle sampling (APS) method can improve the efficiency of MC-based inverse optimization by using the computationally expensive MC simulation more effectively. This method is more efficient than the conventional approach that performs spot dose calculation and optimization in two sequential steps. In this paper, we propose a computational library to perform MC-based spot dose calculation on GPU with the APS scheme. The implemented APS method performs a non-uniform sampling of the particles from pencil beam spots during the optimization process, favoring those from the high intensity spots. The library also conducts two computationally intensive matrix-vector operations frequently used when solving an optimization problem. This library design allows a streamlined integration of the MC-based spot dose calculation into an existing proton therapy inverse planning process. We tested the developed library in a typical inverse optimization system with four patient cases. The library achieved the targeted functions by supporting inverse planning in various proton therapy schemes, e.g. single field uniform dose, 3D intensity modulated proton therapy, and distal edge tracking. The efficiency was 41.6  ±  15.3% higher than the use of a GPU-based MC package in a conventional calculation scheme. The total computation time ranged between 2 and 50 min on a single GPU card depending on the problem size.

A new approach to integrate GPU-based Monte Carlo simulation into inverse treatment plan optimization for proton therapy

NASA Astrophysics Data System (ADS)

Li, Yongbao; Tian, Zhen; Song, Ting; Wu, Zhaoxia; Liu, Yaqiang; Jiang, Steve; Jia, Xun

2017-01-01

Monte Carlo (MC)-based spot dose calculation is highly desired for inverse treatment planning in proton therapy because of its accuracy. Recent studies on biological optimization have also indicated the use of MC methods to compute relevant quantities of interest, e.g. linear energy transfer. Although GPU-based MC engines have been developed to address inverse optimization problems, their efficiency still needs to be improved. Also, the use of a large number of GPUs in MC calculation is not favorable for clinical applications. The previously proposed adaptive particle sampling (APS) method can improve the efficiency of MC-based inverse optimization by using the computationally expensive MC simulation more effectively. This method is more efficient than the conventional approach that performs spot dose calculation and optimization in two sequential steps. In this paper, we propose a computational library to perform MC-based spot dose calculation on GPU with the APS scheme. The implemented APS method performs a non-uniform sampling of the particles from pencil beam spots during the optimization process, favoring those from the high intensity spots. The library also conducts two computationally intensive matrix-vector operations frequently used when solving an optimization problem. This library design allows a streamlined integration of the MC-based spot dose calculation into an existing proton therapy inverse planning process. We tested the developed library in a typical inverse optimization system with four patient cases. The library achieved the targeted functions by supporting inverse planning in various proton therapy schemes, e.g. single field uniform dose, 3D intensity modulated proton therapy, and distal edge tracking. The efficiency was 41.6  ±  15.3% higher than the use of a GPU-based MC package in a conventional calculation scheme. The total computation time ranged between 2 and 50 min on a single GPU card depending on the problem size.

A New Approach to Integrate GPU-based Monte Carlo Simulation into Inverse Treatment Plan Optimization for Proton Therapy

PubMed Central

Li, Yongbao; Tian, Zhen; Song, Ting; Wu, Zhaoxia; Liu, Yaqiang; Jiang, Steve; Jia, Xun

2016-01-01

Monte Carlo (MC)-based spot dose calculation is highly desired for inverse treatment planning in proton therapy because of its accuracy. Recent studies on biological optimization have also indicated the use of MC methods to compute relevant quantities of interest, e.g. linear energy transfer. Although GPU-based MC engines have been developed to address inverse optimization problems, their efficiency still needs to be improved. Also, the use of a large number of GPUs in MC calculation is not favorable for clinical applications. The previously proposed adaptive particle sampling (APS) method can improve the efficiency of MC-based inverse optimization by using the computationally expensive MC simulation more effectively. This method is more efficient than the conventional approach that performs spot dose calculation and optimization in two sequential steps. In this paper, we propose a computational library to perform MC-based spot dose calculation on GPU with the APS scheme. The implemented APS method performs a non-uniform sampling of the particles from pencil beam spots during the optimization process, favoring those from the high intensity spots. The library also conducts two computationally intensive matrix-vector operations frequently used when solving an optimization problem. This library design allows a streamlined integration of the MC-based spot dose calculation into an existing proton therapy inverse planning process. We tested the developed library in a typical inverse optimization system with four patient cases. The library achieved the targeted functions by supporting inverse planning in various proton therapy schemes, e.g. single field uniform dose, 3D intensity modulated proton therapy, and distal edge tracking. The efficiency was 41.6±15.3% higher than the use of a GPU-based MC package in a conventional calculation scheme. The total computation time ranged between 2 and 50 min on a single GPU card depending on the problem size. PMID:27991456

Soft plastic bread packaging: lead content and reuse by families.

PubMed

Weisel, C; Demak, M; Marcus, S; Goldstein, B D

1991-06-01

The presence of lead in labels painted on soft plastic bread packaging was evaluated. Lead was detected on the outside of 17 of 18 soft plastic bread bags that were analyzed, with an average of 26 +/- 6 mg per bag with lead. Of 106 families questioned, 16 percent of respondents reported turning the bags inside out before reusing for food storage, thus putting food in contact with the lead paint. We estimate that a weak acid, such as vinegar, could readily leach 100 micrograms of lead from a painted plastic bag within 10 minutes. Further, lead and other metals painted on food packaging of any type becomes part of the municipal waste stream subject to incineration and to land-filling. The use of lead in packaging presents an unnecessary risk to public health.

Temporal and spatial patterns of wetland sedimentation, West Tennessee

USGS Publications Warehouse

Hupp, C.R.; Bazemore, D.E.

1993-01-01

Dendrogeomorphic techniques were used to describe and interpret patterns of sedimentation rates at two forested wetland sites in West Tennessee. Fifty-five sampling stations were established along transects upstream and downstream from bridge structures, and 515 trees were examined for depth of sediment accretion and cored for age determination. Temporal variation in sedimentation rate may be related more to stream channelization and agricultural activity than to bridge and causeway construction. Sedimentation rates have increased substantially in the last 28 years, although channelized streams may have overall lower rates than unchannelized streams. Comparisons of sedimentation rates from deposition over artificial markers (short term) with those determined from tree-ring analysis (long-term) indicate that trends are similar where hydrogeomorphic conditions have not been altered substantially. No tendency for increased sedimentation upstream from bridges was observed. Deposition rates were inversely correlated with elevation and degree of ponding. Downstream deposition of sand splays appears to be related to flow constrictions and may be extensive. Mean overall rates of sedimentation (between 0.24 and 0.28 cm year-1), determined dendrogeomorphically, are comparable with other published rates. ?? 1993.

Common-midpoint radar surveys of ice sheets: a tool for better ice and bed property inversions

NASA Astrophysics Data System (ADS)

Holschuh, N.; Christianson, K.; Anandakrishnan, S.; Alley, R. B.; Jacobel, R. W.

2016-12-01

In response to the demand for observationally derived boundary conditions in ice-sheet models, geophysicists are striving to more quantitatively interpret the reflection amplitudes of ice penetrating radar data. Inversions for ice-flow parameters and basal properties typically use common-offset radar data, which contain a single observation of bed reflection amplitude at each location in the survey; however, the radar equation has more than one unknown - ice temperature, subglacial water content, and bedrock roughness cannot be uniquely determined without additional constraints. In this study, we adapt traditional seismic property inversion techniques to radar data, using additional information collected with a common-midpoint (CMP) radar survey geometry (which varies the source-receiver offset for each subsurface target). Using two of the first common-midpoint ice-penetrating radar data sets collected over thick ice in Antarctica and Greenland, we test the hypothesis that these data can be used to disentangle the contributions of ice conductivity and bed permittivity to the received reflection amplitudes. We focus specifically on the corrections for the angular dependence of antenna gain and surface reflectivity, refractive focusing effects, and surface scattering losses. Inferred temperature profiles, derived from the constrained ice conductivities at Kamb Ice Stream and the North East Greenland Ice Stream, suggest higher than expected depth-integrated temperatures, as well as non-physical depth trends (with elevated temperatures near the surface). We hypothesize that this is driven in part by offset-dependent interferences between the sub-wavelength layers that make up a single nadir reflection, and present a convolutional model that describes how this interference might systematically reduce reflection power with offset (thereby elevating the inferred attenuation rate). If these additional offset-dependent power losses can be isolated and removed, common-midpoint profiles could provide a promising new way to calibrate property inversions that use the more laterally extensive, airborne, common-offset radar surveys.

Modularized seismic full waveform inversion based on waveform sensitivity kernels - The software package ASKI

NASA Astrophysics Data System (ADS)

Schumacher, Florian; Friederich, Wolfgang; Lamara, Samir; Gutt, Phillip; Paffrath, Marcel

2015-04-01

We present a seismic full waveform inversion concept for applications ranging from seismological to enineering contexts, based on sensitivity kernels for full waveforms. The kernels are derived from Born scattering theory as the Fréchet derivatives of linearized frequency-domain full waveform data functionals, quantifying the influence of elastic earth model parameters and density on the data values. For a specific source-receiver combination, the kernel is computed from the displacement and strain field spectrum originating from the source evaluated throughout the inversion domain, as well as the Green function spectrum and its strains originating from the receiver. By storing the wavefield spectra of specific sources/receivers, they can be re-used for kernel computation for different specific source-receiver combinations, optimizing the total number of required forward simulations. In the iterative inversion procedure, the solution of the forward problem, the computation of sensitivity kernels and the derivation of a model update is held completely separate. In particular, the model description for the forward problem and the description of the inverted model update are kept independent. Hence, the resolution of the inverted model as well as the complexity of solving the forward problem can be iteratively increased (with increasing frequency content of the inverted data subset). This may regularize the overall inverse problem and optimizes the computational effort of both, solving the forward problem and computing the model update. The required interconnection of arbitrary unstructured volume and point grids is realized by generalized high-order integration rules and 3D-unstructured interpolation methods. The model update is inferred solving a minimization problem in a least-squares sense, resulting in Gauss-Newton convergence of the overall inversion process. The inversion method was implemented in the modularized software package ASKI (Analysis of Sensitivity and Kernel Inversion), which provides a generalized interface to arbitrary external forward modelling codes. So far, the 3D spectral-element code SPECFEM3D (Tromp, Komatitsch and Liu, 2008) and the 1D semi-analytical code GEMINI (Friederich and Dalkolmo, 1995) in both, Cartesian and spherical framework are supported. The creation of interfaces to further forward codes is planned in the near future. ASKI is freely available under the terms of the GPL at www.rub.de/aski . Since the independent modules of ASKI must communicate via file output/input, large storage capacities need to be accessible conveniently. Storing the complete sensitivity matrix to file, however, permits the scientist full manual control over each step in a customized procedure of sensitivity/resolution analysis and full waveform inversion. In the presentation, we will show some aspects of the theory behind the full waveform inversion method and its practical realization by the software package ASKI, as well as synthetic and real-data applications from different scales and geometries.

SISYPHUS: A high performance seismic inversion factory

NASA Astrophysics Data System (ADS)

Gokhberg, Alexey; Simutė, Saulė; Boehm, Christian; Fichtner, Andreas

2016-04-01

In the recent years the massively parallel high performance computers became the standard instruments for solving the forward and inverse problems in seismology. The respective software packages dedicated to forward and inverse waveform modelling specially designed for such computers (SPECFEM3D, SES3D) became mature and widely available. These packages achieve significant computational performance and provide researchers with an opportunity to solve problems of bigger size at higher resolution within a shorter time. However, a typical seismic inversion process contains various activities that are beyond the common solver functionality. They include management of information on seismic events and stations, 3D models, observed and synthetic seismograms, pre-processing of the observed signals, computation of misfits and adjoint sources, minimization of misfits, and process workflow management. These activities are time consuming, seldom sufficiently automated, and therefore represent a bottleneck that can substantially offset performance benefits provided by even the most powerful modern supercomputers. Furthermore, a typical system architecture of modern supercomputing platforms is oriented towards the maximum computational performance and provides limited standard facilities for automation of the supporting activities. We present a prototype solution that automates all aspects of the seismic inversion process and is tuned for the modern massively parallel high performance computing systems. We address several major aspects of the solution architecture, which include (1) design of an inversion state database for tracing all relevant aspects of the entire solution process, (2) design of an extensible workflow management framework, (3) integration with wave propagation solvers, (4) integration with optimization packages, (5) computation of misfits and adjoint sources, and (6) process monitoring. The inversion state database represents a hierarchical structure with branches for the static process setup, inversion iterations, and solver runs, each branch specifying information at the event, station and channel levels. The workflow management framework is based on an embedded scripting engine that allows definition of various workflow scenarios using a high-level scripting language and provides access to all available inversion components represented as standard library functions. At present the SES3D wave propagation solver is integrated in the solution; the work is in progress for interfacing with SPECFEM3D. A separate framework is designed for interoperability with an optimization module; the workflow manager and optimization process run in parallel and cooperate by exchanging messages according to a specially designed protocol. A library of high-performance modules implementing signal pre-processing, misfit and adjoint computations according to established good practices is included. Monitoring is based on information stored in the inversion state database and at present implements a command line interface; design of a graphical user interface is in progress. The software design fits well into the common massively parallel system architecture featuring a large number of computational nodes running distributed applications under control of batch-oriented resource managers. The solution prototype has been implemented on the "Piz Daint" supercomputer provided by the Swiss Supercomputing Centre (CSCS).

Simulating the impacts of groundwater pumping on stream aquifer dynamics in semiarid northwestern Oklahoma, USA

NASA Astrophysics Data System (ADS)

Zume, Joseph; Tarhule, Aondover

2008-06-01

Visual MODFLOW, a numerical groundwater flow model, was used to evaluate the impacts of groundwater exploitation on streamflow depletion in the Alluvium and Terrace aquifer of the Beaver-North Canadian River (BNCR) in northwestern Oklahoma, USA. Water demand in semi-arid northwestern Oklahoma is projected to increase by 53% during the next five decades, driven primarily by irrigation, public water supply, and agricultural demand. Using MODFLOW’s streamflow routing package, pumping-induced changes in baseflow and stream leakage were analyzed to estimate streamflow depletion in the BNCR system. Simulation results indicate groundwater pumping has reduced baseflow to streams by approximately 29% and has also increased stream leakage into the aquifer by 18% for a net streamflow loss of 47%. The magnitude and intensity of streamflow depletion, however, varies for different stream segments, ranging from 0 to 20,804 m3/d. The method provides a framework for isolating and quantifying impacts of aquifer pumping on stream function in semiarid alluvial environments.

Introducing Python tools for magnetotellurics: MTpy

NASA Astrophysics Data System (ADS)

Krieger, L.; Peacock, J.; Inverarity, K.; Thiel, S.; Robertson, K.

2013-12-01

Within the framework of geophysical exploration techniques, the magnetotelluric method (MT) is relatively immature: It is still not as widely spread as other geophysical methods like seismology, and its processing schemes and data formats are not thoroughly standardized. As a result, the file handling and processing software within the academic community is mainly based on a loose collection of codes, which are sometimes highly adapted to the respective local specifications. Although tools for the estimation of the frequency dependent MT transfer function, as well as inversion and modelling codes, are available, the standards and software for handling MT data are generally not unified throughout the community. To overcome problems that arise from missing standards, and to simplify the general handling of MT data, we have developed the software package "MTpy", which allows the handling, processing, and imaging of magnetotelluric data sets. It is written in Python and the code is open-source. The setup of this package follows the modular approach of successful software packages like GMT or Obspy. It contains sub-packages and modules for various tasks within the standard MT data processing and handling scheme. Besides pure Python classes and functions, MTpy provides wrappers and convenience scripts to call external software, e.g. modelling and inversion codes. Even though still under development, MTpy already contains ca. 250 functions that work on raw and preprocessed data. However, as our aim is not to produce a static collection of software, we rather introduce MTpy as a flexible framework, which will be dynamically extended in the future. It then has the potential to help standardise processing procedures and at same time be a versatile supplement for existing algorithms. We introduce the concept and structure of MTpy, and we illustrate the workflow of MT data processing utilising MTpy on an example data set collected over a geothermal exploration site in South Australia. Workflow of MT data processing. Within the structural diagram, the MTpy sub-packages are shown in red (time series data processing), green (handling of EDI files and impedance tensor data), yellow (connection to modelling/inversion algorithms), black (impedance tensor interpretation, e.g. by Phase Tensor calculations), and blue (generation of visual representations, e.g pseudo sections or resistivity models).

Resonant TMR inversion in LiF/EuS based spin-filter tunnel junctions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Fen; Chen, Aixi; Institute for Quantum Computing & Department of Electrical and Computer Engineering, University of Waterloo, Waterloo, ON N2L 3G1 Canada

Resonant tunneling can lead to inverse tunnel magnetoresistance when impurity levels rather than direct tunneling dominate the transport process. We fabricated hybrid magnetic tunnel junctions of CoFe/LiF/EuS/Ti, with an epitaxial LiF energy barrier joined with a polycrystalline EuS spin-filter barrier. Due to the water solubility of LiF, the devices were fully packaged in situ. The devices showed sizeable positive TMR up to 16% at low bias voltages but clearly inverted TMR at higher bias voltages. The TMR inversion depends sensitively on the thickness of LiF, and the tendency of inversion disappears when LiF gets thick enough and recovers its intrinsicmore » properties.« less

Life history characteristics and vital rates of Yellowstone Cutthroat Trout in two headwater basins

USGS Publications Warehouse

Uthe, Patrick; Al-Chokhachy, Robert K.; Zale, Alexander V.; Shepard, Bradley B.; McMahon, Thomas E.; Stephens, Tracy

2016-01-01

The Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri is native to the Rocky Mountains and has declined in abundance and distribution as a result of habitat degradation and introduced salmonid species. Many of its remaining strongholds are in headwater basins with minimal human disturbances. Understanding the life histories, vital rates, and behaviors of Yellowstone Cutthroat Trout within headwater stream networks remains limited yet is critical for effective management and conservation. We estimated annual relative growth in length and weight, annual survival rates, and movement patterns of Yellowstone Cutthroat Trout from three tributaries of Spread Creek, Wyoming, and two tributaries of Shields River, Montana, from 2011 through 2013 using PIT tag antennas within a mark–recapture framework. Mean annual growth rates varied among tributaries and size-classes, but were slow compared with populations of Yellowstone Cutthroat Trout from large, low-elevation streams. Survival rates were relatively high compared with those of other Cutthroat Trout subspecies, but we found an inverse relationship between survival and size, a pattern contrary to what has been reported for Cutthroat Trout in large streams. Mean annual survival rates ranged from 0.32 (SE = 0.04) to 0.68 (SE = 0.05) in the Spread Creek basin and from 0.30 (SE = 0.07) to 0.69 (SE = 0.10) in the Shields River basin. Downstream movements from tributaries were substantial, with as much as 26.5% of a tagging cohort leaving over the course of the study. Integrating our growth, survival, and movement results demonstrates the importance of considering strategies to enhance headwater stream habitats and highlights the importance of connectivity with larger stream networks.

Determination of stream reaeration coefficients by use of tracers

USGS Publications Warehouse

Kilpatrick, F.A.; Rathbun, R.E.; Yotsukura, Nobuhiro; Parker, G.W.; DeLong, L.L.

1989-01-01

Stream reaeration is the physical absorption of oxygen from the atmosphere by a flowing stream. This is the primary process by which a stream replenishes the oxygen consumed in the biodegradation of organic wastes. Prior to 1965, reaeration rate coefficients could be estimated only by indirect methods. In 1965, a direct method of measuring stream reaeration coefficients was developed whereby a radioactive tracer gas was injected into a stream-the principle being that the tracer gas would be desorbed from the stream inversely to how oxygen would be absorbed. The technique has since been modified by substituting hydrocarbon gases for the radioactive tracer gas. This manual describes the slug-injection and constant-rate-injection methods of measuring gas-tracer desorption. Emphasis is on the use of rhodamine WT dye as a relatively conservative tracer and propane as the nonconservative gas tracer, on planning field tests, on methods of injection, sampling, and analysis, and on techniques for computing desorption and reaeration coefficients.

Temporal characteristics of electrostatic surface waves in a cold complex plasma containing collision-dominated ion flow

NASA Astrophysics Data System (ADS)

Lee, Myoung-Jae; Jung, Young-Dae

2017-03-01

The influence of electron-ion collision frequency and dust charge on the growth rate of two-stream instability of the electrostatic surface wave propagating at the interface of semi-infinite complex plasma whose constituents are electrons, negatively charged dust, and streaming ions. It is found that the surface wave can be unstable if the multiplication of wave number and ion flow velocity is greater than the total plasma frequency of electrons and dusts. The analytical solution of the growth rate is derived as a function of collision frequency, dust charge, and ion-to-electron density ratio. It is found that the growth rate is inversely proportional to the collision rate, but it is enhanced as the number of electrons residing on the dust grain surface is increased. The growth rate of surface wave is compared to that of the bulk wave.

Using tidal streams to investigate the rotation of the Milky Way's dark matter halo

NASA Astrophysics Data System (ADS)

Valluri, Monica; Snyder, Sarah Jean; Price-Whelan, Adrian M.

2017-06-01

The dark matter halos surrounding Milky Way-like galaxies that are formed in cosmological simulations are triaxial. These simulated triaxial halos are expected to be slowly rotating with log-normal distribution of pattern speeds centered on ~0.148h km/s/kpc (Bailin & Steinmetz 2004, ApJ., 616, 27). Stellar streams arising from a satellite experiencing tidal disruption inside such a slowly rotating triaxial halo are expected to be subject to additional forces (e.g. Coriolis forces) that affect the structure of the tidal streams. Using the Python Galaxy dynamics package Gala (Price-Whelan, http://gala.adrian.pw) we have generated simulations of tidal streams in a range of triaxial potentials to explore how the structure of Milky Way's tidal streams, especially the structure of stream bifurcations and the stream orbital plane, are altered by a slow figure rotation of the triaxial dark matter halo. We investigate what can be inferred about halo rotation from current and future data including upcoming data from Gaia. This work is supported by NASA-ATP award NNX15AK79G to the University of Michigan.

FINIFLUX: An implicit finite element model for quantification of groundwater fluxes and hyporheic exchange in streams and rivers using radon

NASA Astrophysics Data System (ADS)

Frei, S.; Gilfedder, B. S.

2015-08-01

A quantitative understanding of groundwater-surface water interactions is vital for sustainable management of water quantity and quality. The noble gas radon-222 (Rn) is becoming increasingly used as a sensitive tracer to quantify groundwater discharge to wetlands, lakes, and rivers: a development driven by technical and methodological advances in Rn measurement. However, quantitative interpretation of these data is not trivial, and the methods used to date are based on the simplest solutions to the mass balance equation (e.g., first-order finite difference and inversion). Here we present a new implicit numerical model (FINIFLUX) based on finite elements for quantifying groundwater discharge to streams and rivers using Rn surveys at the reach scale (1-50 km). The model is coupled to a state-of-the-art parameter optimization code Parallel-PEST to iteratively solve the mass balance equation for groundwater discharge and hyporheic exchange. The major benefit of this model is that it is programed to be very simple to use, reduces nonuniqueness, and provides numerically stable estimates of groundwater fluxes and hyporheic residence times from field data. FINIFLUX was tested against an analytical solution and then implemented on two German rivers of differing magnitude, the Salzach (˜112 m3 s-1) and the Rote Main (˜4 m3 s-1). We show that using previous inversion techniques numerical instability can lead to physically impossible negative values, whereas the new model provides stable positive values for all scenarios. We hope that by making FINIFLUX freely available to the community that Rn might find wider application in quantifying groundwater discharge to streams and rivers and thus assist in a combined management of surface and groundwater systems.

Soft plastic bread packaging: lead content and reuse by families.

PubMed Central

Weisel, C; Demak, M; Marcus, S; Goldstein, B D

1991-01-01

The presence of lead in labels painted on soft plastic bread packaging was evaluated. Lead was detected on the outside of 17 of 18 soft plastic bread bags that were analyzed, with an average of 26 +/- 6 mg per bag with lead. Of 106 families questioned, 16 percent of respondents reported turning the bags inside out before reusing for food storage, thus putting food in contact with the lead paint. We estimate that a weak acid, such as vinegar, could readily leach 100 micrograms of lead from a painted plastic bag within 10 minutes. Further, lead and other metals painted on food packaging of any type becomes part of the municipal waste stream subject to incineration and to land-filling. The use of lead in packaging presents an unnecessary risk to public health. PMID:2029047

Soft plastic bread packaging: lead content and reuse by families

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weisel, C.; Demak, M.; Marcus, S.

The presence of lead in labels painted on soft plastic bread packaging was evaluated. Lead was detected on the outside of 17 of 18 soft plastic bread bags that were analyzed, with an average of 26 +/- 6 mg per bag with lead. Of 106 families questioned, 16 percent of respondents reported turning the bags inside out before reusing for food storage, thus putting food in contact with the lead paint. We estimate that a weak acid, such as vinegar, could readily leach 100 micrograms of lead from a painted plastic bag within 10 minutes. Further, lead and other metalsmore » painted on food packaging of any type becomes part of the municipal waste stream subject to incineration and to land-filling. The use of lead in packaging presents an unnecessary risk to public health.« less

A measurement system for continuous observations of CO2, CH4, H2O and CO onboard passenger aircraft

NASA Astrophysics Data System (ADS)

Gerbig, Christoph; Filges, Annette; Franke, Harald; Klaus, Christoph; Chen, Huilin

2013-04-01

Improved quantification and understanding of surface-atmosphere exchange fluxes of greenhouse gases (GHGs) caused by natural as well as anthropogenic processes is of paramount importance in a world of a changing climate and ever increasing emissions. Top-down estimation of GHG fluxes is traditionally done by inverse transport modeling, using GHG observations from a global network of stations. Uncertainties in modeled vertical transport rates (moist convection, turbulent mixing, stratosphere-troposphere exchange) however greatly affect the quality of flux estimates. More recently, remote sensing of vertical column mole fractions of GHGs have become available for inverse modeling, reducing the impact of vertical transport uncertainties to first order. However, those need validation against in-situ observations. A strategy for regular, global in-situ atmospheric profiling of GHGs, covering at least the troposphere, is thus needed to provide validation of remote sensing and of forward transport modeling of GHGs, to serve as input for inverse modeling, and to reduce the impact of transport uncertainties. IAGOS-ERI (In-service Aircraft for a Global Observing System - European Research Infrastructure) exploits the synergy between globally operating civil aviation and the need for long-term monitoring of atmospheric composition. Within the framework of IAGOS-ERI a cavity ring-down spectroscopy (CRDS) based measurement system for greenhouse gases was designed, tested, and qualified for deployment on commercial airliners. The design meets requirements regarding physical dimensions (size, weight), performance (long-term stability, low maintenance, robustness, full automation) and safety issues (fire prevention regulations, airworthiness). The system uses components of a commercially available CRDS instrument (G2401-m, Picarro Inc.) mounted into a frame suitable for integration in the avionics bay of the Airbus A-340. The first of the IAGOS GHG packages is scheduled for integration in mid 2013. The aim is to have seven systems operational within four years, providing for long-term GHG observations with near-global coverage. To enable robust and automated operation of the IAGOS GHG package over six-month deployment periods, numerous technical issues had to be addressed. An inlet system, designed as virtual impactor to eliminate sampling of larger aerosols, ice particles, and water droplets, provides additional positive ram-pressure to ensure operation without an upstream sampling pump. Furthermore, no sample drying is required, as the simultaneously measured water vapor mole fraction is used to correct for dilution and spectroscopic effects. This also enables the collection of science-quality water vapor measurements throughout the atmosphere. To allow for trace gas measurements to be fully traceable to WMO scales, a two-standard calibration system has been designed and tested that periodically provides calibration gas to the instrument during flight and on ground for each six-month deployment period. We present results from recent test flights and laboratory tests that document the performance for GHG and water vapor measurements. Furthermore, future applications of the IAGOS-GHG data stream, provided in near-real-time via SatCom to the weather prediction centres, will be discussed.

GP Workbench Manual: Technical Manual, User's Guide, and Software Guide

USGS Publications Warehouse

Oden, Charles P.; Moulton, Craig W.

2006-01-01

GP Workbench is an open-source general-purpose geophysical data processing software package written primarily for ground penetrating radar (GPR) data. It also includes support for several USGS prototype electromagnetic instruments such as the VETEM and ALLTEM. The two main programs in the package are GP Workbench and GP Wave Utilities. GP Workbench has routines for filtering, gridding, and migrating GPR data; as well as an inversion routine for characterizing UXO (unexploded ordinance) using ALLTEM data. GP Workbench provides two-dimensional (section view) and three-dimensional (plan view or time slice view) processing for GPR data. GP Workbench can produce high-quality graphics for reports when Surfer 8 or higher (Golden Software) is installed. GP Wave Utilities provides a wide range of processing algorithms for single waveforms, such as filtering, correlation, deconvolution, and calculating GPR waveforms. GP Wave Utilities is used primarily for calibrating radar systems and processing individual traces. Both programs also contain research features related to the calibration of GPR systems and calculating subsurface waveforms. The software is written to run on the Windows operating systems. GP Workbench can import GPR data file formats used by major commercial instrument manufacturers including Sensors and Software, GSSI, and Mala. The GP Workbench native file format is SU (Seismic Unix), and subsequently, files generated by GP Workbench can be read by Seismic Unix as well as many other data processing packages.

Stream macroinvertebrate communities across a gradient of natural gas development in the Fayetteville Shale.

PubMed

Johnson, Erica; Austin, Bradley J; Inlander, Ethan; Gallipeau, Cory; Evans-White, Michelle A; Entrekin, Sally

2015-10-15

Oil and gas extraction in shale plays expanded rapidly in the U.S. and is projected to expand globally in the coming decades. Arkansas has doubled the number of gas wells in the state since 2005 mostly by extracting gas from the Fayetteville Shale with activity concentrated in mixed pasture-deciduous forests. Concentrated well pads in close proximity to streams could have adverse effects on stream water quality and biota if sedimentation associated with developing infrastructure or contamination from fracturing fluid and waste occurs. Cumulative effects of gas activity and local habitat conditions on macroinvertebrate communities were investigated across a gradient of gas well activity (0.2-3.6 wells per km(2)) in ten stream catchments in spring 2010 and 2011. In 2010, macroinvertebrate density was positively related to well pad inverse flowpath distance from streams (r=0.84, p<0.001). Relatively tolerant mayflies Baetis and Caenis (r=0.64, p=0.04), filtering hydropsychid caddisflies (r=0.73, p=0.01), and chironomid midge densities (r=0.79, p=0.008) also increased in streams where more well pads were closer to stream channels. Macroinvertebrate trophic structure reflected environmental conditions with greater sediment and primary production in streams with more gas activity close to streams. However, stream water turbidity (r=0.69, p=0.02) and chlorophyll a (r=0.89, p<0.001) were the only in-stream variables correlated with gas well activities. In 2011, a year with record spring flooding, a different pattern emerged where mayfly density (p=0.74, p=0.01) and mayfly, stonefly, and caddisfly richness (r=0.78, p=0.008) increased in streams with greater well density and less silt cover. Hydrology and well pad placement in a catchment may interact to result in different relationships between biota and catchment activity between the two sample years. Our data show evidence of different macroinvertebrate communities expressed in catchments with different levels of gas activity that reinforce the need for more quantitative analyses of cumulative freshwater-effects from oil and gas development. Copyright © 2015 Elsevier B.V. All rights reserved.

Effects of peatland burning on hydrology, water quality and aquatic ecosystems

NASA Astrophysics Data System (ADS)

Brown, L. E.; Holden, J.; Palmer, S. M.

2009-04-01

Controlled burning is used worldwide for the management of vegetation, yet there is serious concern about the environmental implications of such practices. Across the UK many peatlands are burned to encourage and maintain heather growth. However, detailed evaluations of the costs, benefits and sustainability of burning are hampered by a lack of basic scientific data. This paper will present the outline of a new three year NERC-funded project called EMBER which provides the first co-ordinated evaluation of vegetation burning on peatland hydrological and ecological processes. Case study sites influenced by prescribed burns will be established in internationally important sites in the Peak District and North Pennines, UK. EMBER will increase understanding of the processes linking prescribed peat vegetation fires, hydrology, water quality and stream invertebrate communities in upland peat dominated catchments. Four work packages will aim to: 1) increase understanding of the effects of moorland patch burning on the hydrology and physicochemistry of peat, through examination of changes in soil hydrology and water quality; 2) provide a better understanding of the effects of moorland patch burning on basin runoff quantity and quality, through examination of river flow regimes, suspended sediment concentration and water chemistry; 3) assess the influence of changes in stream hydrology, water quality and sediment fluxes on stream ecosystems through examination of stream invertebrate community biodiversity and fish abundance and 4) gain a more fundamental understanding of some environmental drivers of upland aquatic community response to burning by experimentally manipulating fine sediment flux under controlled conditions using a series of streamside mesocosms. Taken together these packages will provide a holistic patch- to basin-scale evaluation of burning from the perspective of peat hydrology, chemistry, river water quantity and quality, and stream ecosystems, thus providing the balanced knowledge base which is currently lacking for peatlands.

Salvus: A flexible open-source package for waveform modelling and inversion from laboratory to global scales

NASA Astrophysics Data System (ADS)

Afanasiev, M.; Boehm, C.; van Driel, M.; Krischer, L.; May, D.; Rietmann, M.; Fichtner, A.

2016-12-01

Recent years have been witness to the application of waveform inversion to new and exciting domains, ranging from non-destructive testing to global seismology. Often, each new application brings with it novel wave propagation physics, spatial and temporal discretizations, and models of variable complexity. Adapting existing software to these novel applications often requires a significant investment of time, and acts as a barrier to progress. To combat these problems we introduce Salvus, a software package designed to solve large-scale full-waveform inverse problems, with a focus on both flexibility and performance. Based on a high order finite (spectral) element discretization, we have built Salvus to work on unstructured quad/hex meshes in both 2 or 3 dimensions, with support for P1-P3 bases on triangles and tetrahedra. A diverse (and expanding) collection of wave propagation physics are supported (i.e. coupled solid-fluid). With a focus on the inverse problem, functionality is provided to ease integration with internal and external optimization libraries. Additionally, a python-based meshing package is included to simplify the generation and manipulation of regional to global scale Earth models (quad/hex), with interfaces available to external mesh generators for complex engineering-scale applications (quad/hex/tri/tet). Finally, to ensure that the code remains accurate and maintainable, we build upon software libraries such as PETSc and Eigen, and follow modern software design and testing protocols. Salvus bridges the gap between research and production codes with a design based on C++ mixins and Python wrappers that separates the physical equations from the numerical core. This allows domain scientists to add new equations using a high-level interface, without having to worry about optimized implementation details. Our goal in this presentation is to introduce the code, show several examples across the scales, and discuss some of the extensible design points.

Salvus: A flexible high-performance and open-source package for waveform modelling and inversion from laboratory to global scales

NASA Astrophysics Data System (ADS)

Afanasiev, Michael; Boehm, Christian; van Driel, Martin; Krischer, Lion; May, Dave; Rietmann, Max; Fichtner, Andreas

2017-04-01

Recent years have been witness to the application of waveform inversion to new and exciting domains, ranging from non-destructive testing to global seismology. Often, each new application brings with it novel wave propagation physics, spatial and temporal discretizations, and models of variable complexity. Adapting existing software to these novel applications often requires a significant investment of time, and acts as a barrier to progress. To combat these problems we introduce Salvus, a software package designed to solve large-scale full-waveform inverse problems, with a focus on both flexibility and performance. Currently based on an abstract implementation of high order finite (spectral) elements, we have built Salvus to work on unstructured quad/hex meshes in both 2 or 3 dimensions, with support for P1-P3 bases on triangles and tetrahedra. A diverse (and expanding) collection of wave propagation physics are supported (i.e. viscoelastic, coupled solid-fluid). With a focus on the inverse problem, functionality is provided to ease integration with internal and external optimization libraries. Additionally, a python-based meshing package is included to simplify the generation and manipulation of regional to global scale Earth models (quad/hex), with interfaces available to external mesh generators for complex engineering-scale applications (quad/hex/tri/tet). Finally, to ensure that the code remains accurate and maintainable, we build upon software libraries such as PETSc and Eigen, and follow modern software design and testing protocols. Salvus bridges the gap between research and production codes with a design based on C++ template mixins and Python wrappers that separates the physical equations from the numerical core. This allows domain scientists to add new equations using a high-level interface, without having to worry about optimized implementation details. Our goal in this presentation is to introduce the code, show several examples across the scales, and discuss some of the extensible design points.

Selected inversion as key to a stable Langevin evolution across the QCD phase boundary

NASA Astrophysics Data System (ADS)

Bloch, Jacques; Schenk, Olaf

2018-03-01

We present new results of full QCD at nonzero chemical potential. In PRD 92, 094516 (2015) the complex Langevin method was shown to break down when the inverse coupling decreases and enters the transition region from the deconfined to the confined phase. We found that the stochastic technique used to estimate the drift term can be very unstable for indefinite matrices. This may be avoided by using the full inverse of the Dirac operator, which is, however, too costly for four-dimensional lattices. The major breakthrough in this work was achieved by realizing that the inverse elements necessary for the drift term can be computed efficiently using the selected inversion technique provided by the parallel sparse direct solver package PARDISO. In our new study we show that no breakdown of the complex Langevin method is encountered and that simulations can be performed across the phase boundary.

Use of symbolic computation in robotics education

NASA Technical Reports Server (NTRS)

Vira, Naren; Tunstel, Edward

1992-01-01

An application of symbolic computation in robotics education is described. A software package is presented which combines generality, user interaction, and user-friendliness with the systematic usage of symbolic computation and artificial intelligence techniques. The software utilizes MACSYMA, a LISP-based symbolic algebra language, to automatically generate closed-form expressions representing forward and inverse kinematics solutions, the Jacobian transformation matrices, robot pose error-compensation models equations, and Lagrange dynamics formulation for N degree-of-freedom, open chain robotic manipulators. The goal of such a package is to aid faculty and students in the robotics course by removing burdensome tasks of mathematical manipulations. The software package has been successfully tested for its accuracy using commercially available robots.

New Case Studies of Citizen Action

ERIC Educational Resources Information Center

Tanner, Thomas

1977-01-01

Describes a six-unit case study curriculum package designed for secondary and college-level courses relating to environmental education. The units deal with nuclear power, stream channelization, a river dam project, overgrazing of public lands, agribusiness versus the family farm, and swamp preservation. (Author/DB)

The radiation budget of stratocumulus clouds measured by tethered balloon instrumentation: Variability of flux measurements

NASA Technical Reports Server (NTRS)

Duda, David P.; Stephens, Graeme L.; Cox, Stephen K.

1990-01-01

Measurements of longwave and shortwave radiation were made using an instrument package on the NASA tethered balloon during the FIRE Marine Stratocumulus experiment. Radiation data from two pairs of pyranometers were used to obtain vertical profiles of the near-infrared and total solar fluxes through the boundary layer, while a pair of pyrgeometers supplied measurements of the longwave fluxes in the cloud layer. The radiation observations were analyzed to determine heating rates and to measure the radiative energy budget inside the stratocumulus clouds during several tethered balloon flights. The radiation fields in the cloud layer were also simulated by a two-stream radiative transfer model, which used cloud optical properties derived from microphysical measurements and Mie scattering theory.

Integrated Observations From Fixed and AUV Platforms in the Littoral Zone at the SFOMC Coastal Ocean Observatory

NASA Astrophysics Data System (ADS)

Dhanak, M. R.

2001-12-01

A 12-hour survey of the coastal waters off the east coast of Florida at the South Florida Ocean Measurement Center (SFOMC) coastal ocean observatory, during summer 1999, is described to illustrate the observatory's capabilities for ocean observation. The facility is located close to the Gulf Stream, the continental shelf break being only 3 miles from shore and is therefore influenced by the Gulf Stream meanders and the instability of the horizontal shear layer at its edge. As a result, both cross-shelf and along-shelf components of currents in the littoral zone can undergo dramatic +/- 0.5 m/s oscillations. Observations of surface currents from an OSCR, and of subsurface structure from an autonomous underwater vehicle (AUV) platform, a bottom-mounted ADCP and CT-chain arrays during the survey will be described and compared. The AUV on-board sensors included upward and downward looking 1200kHz ADCP, a CTD package and a small-scale turbulence package, consisting of two shear probes and a fast-response thermistor. Prevailing atmospheric conditions were recorded at an on-site buoy. The combined observations depict flows over a range of scales. Acknowledgements: The observations from the OSCR are due to Nick Shay and Tom Cook (University of Miami), and from the bottom-mounted ADCP, CT chain arrays and the surface buoy are due to Alex Soloviev (Nova Southeastern University) and Mark Luther and Bob Weisberg (University of South Florida).

Development of a comprehensive watershed model applied to study stream yield under drought conditions

USGS Publications Warehouse

Perkins, S.P.; Sophocleous, M.

1999-01-01

We developed a model code to simulate a watershed's hydrology and the hydraulic response of an interconnected stream-aquifer system, and applied the model code to the Lower Republican River Basin in Kansas. The model code links two well-known computer programs: MODFLOW (modular 3-D flow model), which simulates ground water flow and stream-aquifer interaction; and SWAT (soil water assessment tool), a soil water budget simulator for an agricultural watershed. SWAT represents a basin as a collection of subbasins in terms of soil, land use, and weather data, and simulates each subbasin on a daily basis to determine runoff, percolation, evaporation, irrigation, pond seepages and crop growth. Because SWAT applies a lumped hydrologic model to each subbasin, spatial heterogeneities with respect to factors such as soil type and land use are not resolved geographically, but can instead be represented statistically. For the Republican River Basin model, each combination of six soil types and three land uses, referred to as a hydrologic response unit (HRU), was simulated with a separate execution of SWAT. A spatially weighted average was then taken over these results for each hydrologic flux and time step by a separate program, SWBAVG. We wrote a package for MOD-FLOW to associate each subbasin with a subset of aquifer grid cells and stream reaches, and to distribute the hydrologic fluxes given for each subbasin by SWAT and SWBAVG over MODFLOW's stream-aquifer grid to represent tributary flow, surface and ground water diversions, ground water recharge, and evapotranspiration from ground water. The Lower Republican River Basin model was calibrated with respect to measured ground water levels, streamflow, and reported irrigation water use. The model was used to examine the relative contributions of stream yield components and the impact on stream yield and base flow of administrative measures to restrict irrigation water use during droughts. Model results indicate that tributary flow is the dominant component of stream yield and that reduction of irrigation water use produces a corresponding increase in base flow and stream yield. However, the increase in stream yield resulting from reduced water use does not appear to be of sufficient magnitude to restore minimum desirable streamflows.

Mercury cycling in stream ecosystems. 2. Benthic methylmercury production and bed sediment-pore water partitioning.

PubMed

Marvin-Dipasquale, Mark; Lutz, Michelle A; Brigham, Mark E; Krabbenhoft, David P; Aiken, George R; Orem, William H; Hall, Britt D

2009-04-15

Mercury speciation, controls on methylmercury (MeHg) production, and bed sediment-pore water partitioning of total Hg (THg) and MeHg were examined in bed sediment from eight geochemically diverse streams where atmospheric deposition was the predominant Hg input. Across all streams, sediment THg concentrations were best described as a combined function of sediment percent fines (%fines; particles < 63 microm) and organic content. MeHg concentrations were best described as a combined function of organic content and the activity of the Hg(II)-methylating microbial community and were comparable to MeHg concentrations in streams with Hg inputs from industrial and mining sources. Whole sediment tin-reducible inorganic reactive Hg (Hg(II)R) was used as a proxy measure for the Hg(II) pool available for microbial methylation. In conjunction with radiotracer-derived rate constants of 203Hg(II) methylation, Hg(II)R was used to calculate MeHg production potential rates and to explain the spatial variability in MeHg concentration. The %Hg(II)R (of THg) was low (2.1 +/- 5.7%) and was inversely related to both microbial sulfate reduction rates and sediment total reduced sulfur concentration. While sediment THg concentrations were higher in urban streams, %MeHg and %Hg(II)R were higher in nonurban streams. Sediment pore water distribution coefficients (log Kd's) for both THg and MeHg were inversely related to the log-transformed ratio of pore water dissolved organic carbon (DOC) to bed sediment %fines. The stream with the highest drainage basin wetland density also had the highest pore water DOC concentration and the lowest log Kd's for both THg and MeHg. No significant relationship existed between overlying water MeHg concentrations and those in bed sediment or pore water, suggesting upstream sources of MeHg production may be more important than local streambed production as a driver of water column MeHg concentration in drainage basins that receive Hg inputs primarily from atmospheric sources.

An interpolation method for stream habitat assessments

USGS Publications Warehouse

Sheehan, Kenneth R.; Welsh, Stuart A.

2015-01-01

Interpolation of stream habitat can be very useful for habitat assessment. Using a small number of habitat samples to predict the habitat of larger areas can reduce time and labor costs as long as it provides accurate estimates of habitat. The spatial correlation of stream habitat variables such as substrate and depth improves the accuracy of interpolated data. Several geographical information system interpolation methods (natural neighbor, inverse distance weighted, ordinary kriging, spline, and universal kriging) were used to predict substrate and depth within a 210.7-m2 section of a second-order stream based on 2.5% and 5.0% sampling of the total area. Depth and substrate were recorded for the entire study site and compared with the interpolated values to determine the accuracy of the predictions. In all instances, the 5% interpolations were more accurate for both depth and substrate than the 2.5% interpolations, which achieved accuracies up to 95% and 92%, respectively. Interpolations of depth based on 2.5% sampling attained accuracies of 49–92%, whereas those based on 5% percent sampling attained accuracies of 57–95%. Natural neighbor interpolation was more accurate than that using the inverse distance weighted, ordinary kriging, spline, and universal kriging approaches. Our findings demonstrate the effective use of minimal amounts of small-scale data for the interpolation of habitat over large areas of a stream channel. Use of this method will provide time and cost savings in the assessment of large sections of rivers as well as functional maps to aid the habitat-based management of aquatic species.

Primary weathering rates, water transit times and concentration-discharge relations: A theoretical analysis for the critical zone

NASA Astrophysics Data System (ADS)

Ameli, Ali; Erlandsson, Martin; Beven, Keith; Creed, Irena; McDonnell, Jeffrey; Bishop, Kevin

2017-04-01

The permeability architecture of the critical zone exerts a major influence on the hydrogeochemistry of the critical zone. Water flowpath dynamics drive the spatio-temporal pattern of geochemical evolution and resulting streamflow concentration-discharge (C-Q) relation, but these flowpaths are complex and difficult to map quantitatively. Here, we couple a new integrated flow and particle tracking transport model with a general reversible Transition-State-Theory style dissolution rate-law to explore theoretically how C-Q relations and concentration in the critical zone respond to decline in saturated hydraulic conductivity (Ks) with soil depth. We do this for a range of flow rates and mineral reaction kinetics. Our results show that for minerals with a high ratio of equilibrium concentration to intrinsic weathering rate, vertical heterogeneity in Ks enhances the gradient of weathering-derived solute concentration in the critical zone and strengthens the inverse stream C-Q relation. As the ratio of equilibrium concentration to intrinsic weathering rate decreases, the spatial distribution of concentration in the critical zone becomes more uniform for a wide range of flow rates, and stream C-Q relation approaches chemostatic behaviour, regardless of the degree of vertical heterogeneity in Ks. These findings suggest that the transport-controlled mechanisms in the hillslope can lead to chemostatic C-Q relations in the stream while the hillslope surface reaction-controlled mechanisms are associated with an inverse stream C-Q relation. In addition, as the ratio of equilibrium concentration to intrinsic weathering rate decreases, the concentration in the critical zone and stream become less dependent on groundwater age (or transit time)

Primary weathering rates, water transit times, and concentration-discharge relations: A theoretical analysis for the critical zone

NASA Astrophysics Data System (ADS)

Ameli, Ali A.; Beven, Keith; Erlandsson, Martin; Creed, Irena F.; McDonnell, Jeffrey J.; Bishop, Kevin

2017-01-01

The permeability architecture of the critical zone exerts a major influence on the hydrogeochemistry of the critical zone. Water flow path dynamics drive the spatiotemporal pattern of geochemical evolution and resulting streamflow concentration-discharge (C-Q) relation, but these flow paths are complex and difficult to map quantitatively. Here we couple a new integrated flow and particle tracking transport model with a general reversible Transition State Theory style dissolution rate law to explore theoretically how C-Q relations and concentration in the critical zone respond to decline in saturated hydraulic conductivity (Ks) with soil depth. We do this for a range of flow rates and mineral reaction kinetics. Our results show that for minerals with a high ratio of equilibrium concentration (Ceq) to intrinsic weathering rate (Rmax), vertical heterogeneity in Ks enhances the gradient of weathering-derived solute concentration in the critical zone and strengthens the inverse stream C-Q relation. As CeqRmax decreases, the spatial distribution of concentration in the critical zone becomes more uniform for a wide range of flow rates, and stream C-Q relation approaches chemostatic behavior, regardless of the degree of vertical heterogeneity in Ks. These findings suggest that the transport-controlled mechanisms in the hillslope can lead to chemostatic C-Q relations in the stream while the hillslope surface reaction-controlled mechanisms are associated with an inverse stream C-Q relation. In addition, as CeqRmax decreases, the concentration in the critical zone and stream become less dependent on groundwater age (or transit time).

A general theory of two- and three-dimensional rotational flow in subsonic and transonic turbomachines

NASA Technical Reports Server (NTRS)

Wu, Chung-Hua

1993-01-01

This report represents a general theory applicable to axial, radial, and mixed flow turbomachines operating at subsonic and supersonic speeds with a finite number of blades of finite thickness. References reflect the evolution of computational methods used, from the inception of the theory in the 50's to the high-speed computer era of the 90's. Two kinds of relative stream surfaces, S(sub 1) and S(sub 2), are introduced for the purpose of obtaining a three-dimensional flow solution through the combination of two-dimensional flow solutions. Nonorthogonal curvilinear coordinates are used for the governing equations. Methods of computing transonic flow along S(sub 1) and S(sub 2) stream surfaces are given for special cases as well as for fully three-dimensional transonic flows. Procedures pertaining to the direct solutions and inverse solutions are presented. Information on shock wave locations and shapes needed for computations are discussed. Experimental data from a Deutsche Forschungs- und Versuchsanstalt fur Luft- und Raumfahrt e.V. (DFVLR) rotor and from a Chinese Academy of Sciences (CAS) transonic compressor rotor are compared with the computed flow properties.

Creating Methane from Plastics: Recycling at a Lunar Outpost

NASA Technical Reports Server (NTRS)

Captain, Janine; Santiago, Eddie; Wheeler, Ray; Strayer, RIchard; Garland, Jay; Parrish, Clyde

2010-01-01

The high cost of re-supply from Earth demands resources to be utilized to the fullest extent for exploration missions. Recycling is a key technology that maximizes the available resources by converting waste products into useful commodities. One example of this is to convert crew member waste such as plastic packaging, food scraps, and human waste, into fuel. The ability to refuel on the lunar surface would reduce the vehicle mass during launch and provide excess payload capability. The goal of this project is to determine the feasibility of recycling waste into methane on the lunar outpost by performing engineering assessments and lab demonstrations of the technology. The first goal of the project was to determine how recycling could influence lunar exploration. Table I shows an estimation of the typical dried waste stream generated each day for a crew of four. Packaging waste accounts for nearly 86% of the dry waste stream and is a significant source of carbon on the lunar surface. This is important because methane (CH4) can be used as fuel and no other source of carbon is available on the lunar surface. With the initial assessment indicating there is sufficient resources in the waste stream to provide refueling capabilities, the project was designed to examine the conversion of plastics into methane.

Modeling Air Temperature/Water Temperature Relations Along a Small Mountain Stream Under Increasing Urban Influence

NASA Astrophysics Data System (ADS)

Fedders, E. R.; Anderson, W. P., Jr.; Hengst, A. M.; Gu, C.

2017-12-01

Boone Creek is a headwater stream of low to moderate gradient located in Boone, North Carolina, USA. Total impervious surface coverage in the 5.2 km2 catchment drained by the 1.9 km study reach increases from 13.4% in the upstream half of the reach to 24.3% in the downstream half. Other markers of urbanization, including culverting, lack of riparian shade vegetation, and bank armoring also increase downstream. Previous studies have shown the stream to be prone to temperature surges on short timescales (minutes to hours) caused by summer runoff from the urban hardscaping. This study investigates the effects of urbanization on the stream's thermal regime at daily to yearly timescales. To do this, we developed an analytical model of daily average stream temperatures based on daily average air temperatures. We utilized a two-part model comprising annual and biannual components and a daily component consisting of a 3rd-order Markov process in order to fit the thermal dynamics of our small, gaining stream. Optimizing this model at each of our study sites in each studied year (78 total site-years of data) yielded annual thermal exchange coefficients (K) for each site. These K values quantify the strength of the relationship between stream and air temperature, or inverse thermal stability. In a uniform, pristine catchment environment, K values are expected to decrease downstream as the stream gains discharge volume and, therefore, thermal inertia. Interannual average K values for our study reach, however, show an overall increase from 0.112 furthest upstream to 0.149 furthest downstream, despite a near doubling of stream discharge between these monitoring points. K values increase only slightly in the upstream, less urban, half of the reach. A line of best fit through these points on a plot of reach distance versus K value has a slope of 2E-6. But the K values of downstream, more urbanized sites increase at a rate of 2E-5 per meter of reach distance, an order of magnitude greater. This indicates a possible tipping point in the stream temperature-water temperature relationship at which increased urbanization overpowers increasing stream thermal inertia.

Diel cycles in dissolved metal concentrations in streams: Occurrence and possible causes

USGS Publications Warehouse

Nimick, David A.; Gammons, Christopher H.; Cleasby, Thomas E.; Madison, James P.; Skaar, Don; Brick, Christine M.

2003-01-01

Substantial diel (24‐hour) cycles in dissolved (0.1‐μm filtration) metal concentrations were observed during low flow for 18 sampling episodes at 14 sites on 12 neutral and alkaline streams draining historical mining areas in Montana and Idaho. At some sites, concentrations of Cd, Mn, Ni, and Zn increased as much as 119, 306, 167, and 500%, respectively, from afternoon minimum values to maximum values shortly after sunrise. Arsenic concentrations exhibited the inverse temporal pattern with increases of up to 54%. Variations in Cu concentrations were small and inconsistent. Diel metal cycles are widespread and persistent, occur over a wide range of metal concentrations, and likely are caused primarily by instream geochemical processes. Adsorption is the only process that can explain the inverse temporal patterns of As and the divalent metals. Diel metal cycles have important implications for many types of water‐quality studies and for understanding trace‐metal mobility.

Statistical methods and computing for big data.

PubMed

Wang, Chun; Chen, Ming-Hui; Schifano, Elizabeth; Wu, Jing; Yan, Jun

2016-01-01

Big data are data on a massive scale in terms of volume, intensity, and complexity that exceed the capacity of standard analytic tools. They present opportunities as well as challenges to statisticians. The role of computational statisticians in scientific discovery from big data analyses has been under-recognized even by peer statisticians. This article summarizes recent methodological and software developments in statistics that address the big data challenges. Methodologies are grouped into three classes: subsampling-based, divide and conquer, and online updating for stream data. As a new contribution, the online updating approach is extended to variable selection with commonly used criteria, and their performances are assessed in a simulation study with stream data. Software packages are summarized with focuses on the open source R and R packages, covering recent tools that help break the barriers of computer memory and computing power. Some of the tools are illustrated in a case study with a logistic regression for the chance of airline delay.

Statistical methods and computing for big data

PubMed Central

Wang, Chun; Chen, Ming-Hui; Schifano, Elizabeth; Wu, Jing

2016-01-01

Big data are data on a massive scale in terms of volume, intensity, and complexity that exceed the capacity of standard analytic tools. They present opportunities as well as challenges to statisticians. The role of computational statisticians in scientific discovery from big data analyses has been under-recognized even by peer statisticians. This article summarizes recent methodological and software developments in statistics that address the big data challenges. Methodologies are grouped into three classes: subsampling-based, divide and conquer, and online updating for stream data. As a new contribution, the online updating approach is extended to variable selection with commonly used criteria, and their performances are assessed in a simulation study with stream data. Software packages are summarized with focuses on the open source R and R packages, covering recent tools that help break the barriers of computer memory and computing power. Some of the tools are illustrated in a case study with a logistic regression for the chance of airline delay. PMID:27695593

Bidirectional Energy Cascades and the Origin of Kinetic Alfvenic and Whistler Turbulence in the Solar Wind

NASA Technical Reports Server (NTRS)

Che, H.; Goldstein, M. L.; Vinas, A. F.

2014-01-01

The observed steep kinetic scale turbulence spectrum in the solar wind raises the question of how that turbulence originates. Observations of keV energetic electrons during solar quiet time suggest them as a possible source of free energy to drive kinetic turbulence. Using particle-in-cell simulations, we explore how the free energy released by an electron two-stream instability drives Weibel-like electromagnetic waves that excite wave-wave interactions. Consequently, both kinetic Alfvénic and whistler turbulence are excited that evolve through inverse and forward magnetic energy cascades.

Robot Would Reconfigure Modular Equipment

NASA Technical Reports Server (NTRS)

Purves, Lloyd R.

1993-01-01

Special-purpose sets of equipment, packaged in identical modules with identical interconnecting mechanisms, attached to or detached from each other by specially designed robot, according to proposal. Two-arm walking robot connects and disconnects modules, operating either autonomously or under remote supervision. Robot walks along row of connected modules by grasping successive attachment subassemblies in hand-over-hand motion. Intended application for facility or station in outer space; robot reconfiguration scheme makes it unnecessary for astronauts to venture outside spacecraft or space station. Concept proves useful on Earth in assembly, disassembly, or reconfiguration of equipment in such hostile environments as underwater, near active volcanoes, or in industrial process streams.

The inverse of winnowing: a FORTRAN subroutine and discussion of unwinnowing discrete data

USGS Publications Warehouse

Bracken, Robert E.

2004-01-01

This report describes an unwinnowing algorithm that utilizes a discrete Fourier transform, and a resulting Fortran subroutine that winnows or unwinnows a 1-dimensional stream of discrete data; the source code is included. The unwinnowing algorithm effectively increases (by integral factors) the number of available data points while maintaining the original frequency spectrum of a data stream. This has utility when an increased data density is required together with an availability of higher order derivatives that honor the original data.

Simulating ground water-lake interactions: Approaches and insights

USGS Publications Warehouse

Hunt, R.J.; Haitjema, H.M.; Krohelski, J.T.; Feinstein, D.T.

2003-01-01

Approaches for modeling lake-ground water interactions have evolved significantly from early simulations that used fixed lake stages specified as constant head to sophisticated LAK packages for MODFLOW. Although model input can be complex, the LAK package capabilities and output are superior to methods that rely on a fixed lake stage and compare well to other simple methods where lake stage can be calculated. Regardless of the approach, guidelines presented here for model grid size, location of three-dimensional flow, and extent of vertical capture can facilitate the construction of appropriately detailed models that simulate important lake-ground water interactions without adding unnecessary complexity. In addition to MODFLOW approaches, lake simulation has been formulated in terms of analytic elements. The analytic element lake package had acceptable agreement with a published LAK1 problem, even though there were differences in the total lake conductance and number of layers used in the two models. The grid size used in the original LAK1 problem, however, violated a grid size guideline presented in this paper. Grid sensitivity analyses demonstrated that an appreciable discrepancy in the distribution of stream and lake flux was related to the large grid size used in the original LAK1 problem. This artifact is expected regardless of MODFLOW LAK package used. When the grid size was reduced, a finite-difference formulation approached the analytic element results. These insights and guidelines can help ensure that the proper lake simulation tool is being selected and applied.

Development of habitat suitability indices for the Candy Darter, with cross-scale validation across representative populations

USGS Publications Warehouse

Dunn, Corey G.; Angermeier, Paul

2016-01-01

Understanding relationships between habitat associations for individuals and habitat factors that limit populations is a primary challenge for managers of stream fishes. Although habitat use by individuals can provide insight into the adaptive significance of selected microhabitats, not all habitat parameters will be significant at the population level, particularly when distributional patterns partially result from habitat degradation. We used underwater observation to quantify microhabitat selection by an imperiled stream fish, the Candy Darter Etheostoma osburni, in two streams with robust populations. We developed multiple-variable and multiple-life-stage habitat suitability indices (HSIs) from microhabitat selection patterns and used them to assess the suitability of available habitat in streams where Candy Darter populations were extirpated, localized, or robust. Next, we used a comparative framework to examine relationships among (1) habitat availability across streams, (2) projected habitat suitability of each stream, and (3) a rank for the likely long-term viability (robustness) of the population inhabiting each stream. Habitat selection was characterized by ontogenetic shifts from the low-velocity, slightly embedded areas used by age-0 Candy Darters to the swift, shallow areas with little fine sediment and complex substrate, which were used by adults. Overall, HSIs were strongly correlated with population rank. However, we observed weak or inverse relationships between predicted individual habitat suitability and population robustness for multiple life stages and variables. The results demonstrated that microhabitat selection by individuals does not always reflect population robustness, particularly when based on a single life stage or season, which highlights the risk of generalizing habitat selection that is observed during nonstressful periods or for noncritical resources. These findings suggest that stream fish managers may need to be cautious when implementing conservation measures based solely on observations of habitat selection by individuals and that detailed study at the individual and population levels may be necessary to identify habitat that limits populations.

Rtop - an R package for interpolation along the stream network

NASA Astrophysics Data System (ADS)

Skøien, J. O.; Laaha, G.; Koffler, D.; Blöschl, G.; Pebesma, E.; Parajka, J.; Viglione, A.

2012-04-01

Geostatistical methods have a long tradition within analysis of data that can be conceptualized as simple point data, such as soil properties, or for regular blocks, such as mining data. However, these methods have been used to a limited extent for estimation along stream networks. A few exceptions are given by (Gottschalk 1993, Sauquet et al. 2000, Gottschalk et al. 2006, Skøien et al. 2006), and an overview by Laaha and Blöschl (2011). Interpolation of runoff characteristics are more complicated than the traditional random variables estimated by geostatistical methods, as the measurements have a more complicated support, and many catchments are nested. Skøien et al. (2006) presented the model Top-kriging which takes these effects into account for interpolation of stream flow characteristics (exemplified by the 100 year flood). The method has here been implemented as a package in the open source statistical environment R (R Development Core Team 2011). Taking advantage of the existing methods in R for working with spatial objects, and the extensive possibilities for visualizing the result, this makes it considerably easier to apply the method on new data sets, in comparison to earlier implementation of the method. In addition to user feedback, the package has also been tested by colleagues whose only responsibility has been to search for bugs, inconsistencies and shortcomings of the documentation. The last part is often the part that gets the least attention in small open source projects, and we have solved this by acknowledging their effects as co-authors. The model will soon be uploaded to CRAN, but is in the meantime also available from R-forge and can be installed by: > install.packages("rtop", repos="http://R-Forge.R-project.org") Gottschalk, L., 1993. Interpolation of runoff applying objective methods. Stochastic Hydrology and Hydraulics, 7, 269-281. Gottschalk, L., Krasovskaia, I., Leblois, E. & Sauquet, E., 2006. Mapping mean and variance of runoff in a river basin. Hydrology and Earth System Sciences, 10, 469-484. Laaha, G. & Blöschl, G. 2011. Geostatistics on river networks - a reviewed. EGU General Assembly, Vienna, Austria. R Development Core Team, 2011. R: A language and environment for statistical computing. Vienna, Austria, ISBN 3-900051-07-0. Sauquet, E., Gottschalk, L. & Leblois, E., 2000. Mapping average annual runoff: A hierarchical approach applying a stochastic interpolation scheme. Hydrological Sciences Journal, 45 (6), 799-815. Skøien, J.O., Merz, R. & Blöschl, G., 2006. Top-kriging - geostatistics on stream networks. Hydrology and Earth System Sciences, 10, 277-287.

Effects of an Experimental Enrichment of Instream Habitat Heterogeneity on the Stream Bed Morphology and Chironomid Community of a Straightened Section in a Sandy Lowland Stream

NASA Astrophysics Data System (ADS)

Spänhoff, Bernd; Riss, Wolfgang; Jäkel, Paul; Dakkak, Nadja; Meyer, Elisabeth I.

2006-02-01

A straightened stream stretch with poor habitat heterogeneity was divided into a “control” section with a low amount of submerged woody debris and an experimentally “wood-enriched” downstream section to study the effect of enhanced habitat diversity on the benthic invertebrate community. The downstream section was enriched by fixing 25 wood packages constructed from 9-10 branches on the stream bottom. Succession processes occurring in the two stream sections were compared by chironomid exuviae drift from July to November 2000 and from April to August 2001. During the first sampling period, more drifting chironomid exuviae (medians of control vs. wood-enriched: 446 vs. 331, no significant difference) and total number of taxa (44 vs. 36, Wilcoxon signed-rank test P = 0.019) were recorded for the control section. Although species compositions of both stream sections were highly similar (Sørensen index: 0.83) the diversity in the wood-enriched section was distinctly lower compared to the control section (Shannon-Weaver index: 1.19 vs. 1.50). During the second sampling period, exuviae numbers remained higher in the control section (median: 326 vs. 166), but total numbers of taxa were nearly equal (51 vs. 49), as well as species diversity (Shannon-Weaver index: 1.67 vs. 1.64). The lower chironomid diversity observed during the first sampling period coincided with a gradual but significant change of the streambed morphology in the wood-enriched section. There, the initially more U-shaped profile (V/U = 0.81 ± 0.37) had turned into a pronounced V shape (V/U = 1.14 ± 0.21), whereas the control section retained its unaltered U shape (V/U = 0.62-0.75). This small-scale study on experimental of woody debris in sandy lowland streams showed that the negative impact of increased hydraulic disturbance of the existing streambed more than outweighed any positive impact resulting from the increase in woody debris.

Nitrogen retention in rivers: Model development and application to watersheds in the northeastern U.S.A.

USGS Publications Warehouse

Seitzinger, S.P.; Styles, R.V.; Boyer, E.W.; Alexander, R.B.; Billen, G.; Howarth, R.W.; Mayer, B.; Van Breemen, N.

2002-01-01

A regression model (RivR-N) was developed that predicts the proportion of N removed from streams and reservoirs as an inverse function of the water displacement time of the water body (ratio of water body depth to water time of travel). When applied to 16 drainage networks in the eastern U.S., the RivR-N model predicted that 37% to 76% of N input to these rivers is removed during transport through the river networks. Approximately half of that is removed in 1st through 4th order streams which account for 90% of the total stream length. The other half is removed in 5th order and higher rivers which account for only about 10% of the total stream length. Most N removed in these higher orders is predicted to originate from watershed loading to small and intermediate sized streams. The proportion of N removed from all streams in the watersheds (37-76%) is considerably higher than the proportion of N input to an individual reach that is removed in that reach (generally <20%) because of the cumulative effect of continued nitrogen removal along the entire flow path in downstream reaches. This generally has not been recognized in previous studies, but is critical to an evaluation of the total amount of N removed within a river network. At the river network scale, reservoirs were predicted to have a minimal effect on N removal. A fairly modest decrease (<10 percentage points) in the N removed at the river network scale was predicted when a third of the direct watershed loading was to the two highest orders compared to a uniform loading.

Inverse design of near unity efficiency perfectly vertical grating couplers.

PubMed

Michaels, Andrew; Yablonovitch, Eli

2018-02-19

Efficient coupling between integrated optical waveguides and optical fibers is essential to the success of silicon photonics. While many solutions exist, perfectly vertical grating couplers that scatter light out of a waveguide in the direction normal to the waveguide's top surface are an ideal candidate due to their potential to reduce packaging complexity. Designing such couplers with high efficiencies, however, has proven difficult. In this paper, we use inverse electromagnetic design techniques to optimize a high efficiency two-layer perfectly vertical silicon grating coupler. Our base design achieves a chip-to-fiber coupling efficiency of 99.2% (-0.035 dB) at 1550 nm. Using this base design as a starting point, we run subsequent constrained optimizations to realize vertical couplers with coupling efficiencies over 96% and back reflections of less than -40 dB which can be fabricated using 65 nm-resolution lithography. These results demonstrate a new path forward for designing fabrication-tolerant ultra high efficiency grating couplers.

Modeling and inversion Matlab algorithms for resistivity, induced polarization and seismic data

NASA Astrophysics Data System (ADS)

Karaoulis, M.; Revil, A.; Minsley, B. J.; Werkema, D. D.

2011-12-01

M. Karaoulis (1), D.D. Werkema (3), A. Revil (1,2), A., B. Minsley (4), (1) Colorado School of Mines, Dept. of Geophysics, Golden, CO, USA. (2) ISTerre, CNRS, UMR 5559, Université de Savoie, Equipe Volcan, Le Bourget du Lac, France. (3) U.S. EPA, ORD, NERL, ESD, CMB, Las Vegas, Nevada, USA . (4) USGS, Federal Center, Lakewood, 10, 80225-0046, CO. Abstract We propose 2D and 3D forward modeling and inversion package for DC resistivity, time domain induced polarization (IP), frequency-domain IP, and seismic refraction data. For the resistivity and IP case, discretization is based on rectangular cells, where each cell has as unknown resistivity in the case of DC modelling, resistivity and chargeability in the time domain IP modelling, and complex resistivity in the spectral IP modelling. The governing partial-differential equations are solved with the finite element method, which can be applied to both real and complex variables that are solved for. For the seismic case, forward modeling is based on solving the eikonal equation using a second-order fast marching method. The wavepaths are materialized by Fresnel volumes rather than by conventional rays. This approach accounts for complicated velocity models and is advantageous because it considers frequency effects on the velocity resolution. The inversion can accommodate data at a single time step, or as a time-lapse dataset if the geophysical data are gathered for monitoring purposes. The aim of time-lapse inversion is to find the change in the velocities or resistivities of each model cell as a function of time. Different time-lapse algorithms can be applied such as independent inversion, difference inversion, 4D inversion, and 4D active time constraint inversion. The forward algorithms are benchmarked against analytical solutions and inversion results are compared with existing ones. The algorithms are packaged as Matlab codes with a simple Graphical User Interface. Although the code is parallelized for multi-core cpus, it is not as fast as machine code. In the case of large datasets, someone should consider transferring parts of the code to C or Fortran through mex files. This code is available through EPA's website on the following link http://www.epa.gov/esd/cmb/GeophysicsWebsite/index.html Although this work was reviewed by EPA and approved for publication, it may not necessarily reflect official Agency policy.

Analytically based forward and inverse models of fluvial landscape evolution during temporally continuous climatic and tectonic variations

NASA Astrophysics Data System (ADS)

Goren, Liran; Petit, Carole

2017-04-01

Fluvial channels respond to changing tectonic and climatic conditions by adjusting their patterns of erosion and relief. It is therefore expected that by examining these patterns, we can infer the tectonic and climatic conditions that shaped the channels. However, the potential interference between climatic and tectonic signals complicates this inference. Within the framework of the stream power model that describes incision rate of mountainous bedrock rivers, climate variability has two effects: it influences the erosive power of the river, causing local slope change, and it changes the fluvial response time that controls the rate at which tectonically and climatically induced slope breaks are communicated upstream. Because of this dual role, the fluvial response time during continuous climate change has so far been elusive, which hinders our understanding of environmental signal propagation and preservation in the fluvial topography. An analytic solution of the stream power model during general tectonic and climatic histories gives rise to a new definition of the fluvial response time. The analytic solution offers accurate predictions for landscape evolution that are hard to achieve with classical numerical schemes and thus can be used to validate and evaluate the accuracy of numerical landscape evolution models. The analytic solution together with the new definition of the fluvial response time allow inferring either the tectonic history or the climatic history from river long profiles by using simple linear inversion schemes. Analytic study of landscape evolution during periodic climate change reveals that high frequency (10-100 kyr) climatic oscillations with respect to the response time, such as Milankovitch cycles, are not expected to leave significant fingerprints in the upstream reaches of fluvial channels. Linear inversion schemes are applied to the Tinee river tributaries in the southern French Alps, where tributary long profiles are used to recover the incision rate history of the Tinee main trunk. Inversion results show periodic, high incision rate pulses, which are correlated with interglacial episodes. Similar incision rate histories are recovered for the past 100 kyr when assuming constant climatic conditions or periodic climatic oscillations, in agreement with theoretical predictions.

GenomeDiagram: a python package for the visualization of large-scale genomic data.

PubMed

Pritchard, Leighton; White, Jennifer A; Birch, Paul R J; Toth, Ian K

2006-03-01

We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages. The package integrates with datatypes from the BioPython project, and is available for Windows, Linux and Mac OS X systems. GenomeDiagram is freely available as source code (under GNU Public License) at http://bioinf.scri.ac.uk/lp/programs.html, and requires Python 2.3 or higher, and recent versions of the ReportLab and BioPython packages. A user manual, example code and images are available at http://bioinf.scri.ac.uk/lp/programs.html.

Parallel Fortran-MPI software for numerical inversion of the Laplace transform and its application to oscillatory water levels in groundwater environments

USGS Publications Warehouse

Zhan, X.

2005-01-01

A parallel Fortran-MPI (Message Passing Interface) software for numerical inversion of the Laplace transform based on a Fourier series method is developed to meet the need of solving intensive computational problems involving oscillatory water level's response to hydraulic tests in a groundwater environment. The software is a parallel version of ACM (The Association for Computing Machinery) Transactions on Mathematical Software (TOMS) Algorithm 796. Running 38 test examples indicated that implementation of MPI techniques with distributed memory architecture speedups the processing and improves the efficiency. Applications to oscillatory water levels in a well during aquifer tests are presented to illustrate how this package can be applied to solve complicated environmental problems involved in differential and integral equations. The package is free and is easy to use for people with little or no previous experience in using MPI but who wish to get off to a quick start in parallel computing. ?? 2004 Elsevier Ltd. All rights reserved.

Biogeochemistry of a treeline watershed, northwestern Alaska

USGS Publications Warehouse

Stottlemyer, R.

2001-01-01

Since 1950, mean annual temperatures in northwestern Alaska have increased. Change in forest floor and soil temperature or moisture could alter N mineralization rates, production of dissolved organic carbon (DOC) and organic nitrogen (DON), and their export to the aquatic ecosystem. In 1990, we began study of nutrient cycles in the 800-ha Asik watershed, located at treeline in the Noatak National Preserve, northwestern Alaska. This paper summarizes relationships between topographic aspect, soil temperature and moisture, inorganic and organic N pools, C pools, CO2 efflux, growing season net N mineralization rates, and stream water chemistry. Forest floor (O2) C/N ratios, C pools, temperature, and moisture were greater on south aspects. More rapid melt of the soil active layer (zone of annual freeze-thaw) and permafrost accounted for the higher moisture. The O2 C and N content were correlated with moisture, inorganic N pools, CO2 efflux, and inversely with temperature. Inorganic N pools were correlated with temperature and CO2 efflux. Net N mineralization rates were positive in early summer, and correlated with O2 moisture, temperature, and C and N pools. Net nitrification rates were inversely correlated with moisture, total C and N. The CO2 efflux increased with temperature and moisture, and was greater on south aspects. Stream ion concentrations declined and DOC increased with discharge. Stream inorganic nitrogen (DIN) output exceeded input by 70%. Alpine stream water nitrate (NO-3) and DOC concentrations indicated substantial contributions to the watershed DIN and DOC budgets.

Biogeochemistry of a treeline watershed, northwestern Alaska.

PubMed

Stottlemyer, R

2001-01-01

Since 1950, mean annual temperatures in northwestern Alaska have increased. Change in forest floor and soil temperature or moisture could alter N mineralization rates, production of dissolved organic carbon (DOC) and organic nitrogen (DON), and their export to the aquatic ecosystem. In 1990, we began study of nutrient cycles in the 800-ha Asik watershed, located at treeline in the Noatak National Preserve, northwestern Alaska. This paper summarizes relationships between topographic aspect, soil temperature and moisture, inorganic and organic N pools, C pools, CO2 efflux, growing season net N mineralization rates, and stream water chemistry. Forest floor (O2) C/N ratios, C pools, temperature, and moisture were greater on south aspects. More rapid melt of the soil active layer (zone of annual freeze-thaw) and permafrost accounted for the higher moisture. The O2 C and N content were correlated with moisture, inorganic N pools, CO2 efflux, and inversely with temperature. Inorganic N pools were correlated with temperature and CO2 efflux. Net N mineralization rates were positive in early summer, and correlated with O2 moisture, temperature, and C and N pools. Net nitrification rates were inversely correlated with moisture, total C and N. The CO2 efflux increased with temperature and moisture, and was greater on south aspects. Stream ion concentrations declined and DOC increased with discharge. Stream inorganic nitrogen (DIN) output exceeded input by 70%. Alpine stream water nitrate (NO3-) and DOC concentrations indicated substantial contributions to the watershed DIN and DOC budgets.

Characterizing Milky Way Tidal Streams and Dark Matter with MilkyWay@home

NASA Astrophysics Data System (ADS)

Newberg, Heidi Jo; Shelton, Siddhartha; Weiss, Jake

2018-01-01

MilkyWay@home is a 0.5 PetaFLOPS volunteer computing platform that is mapping out the density substructure of the Sagittarius Dwarf Tidal Stream, the so-called bifurcated portion of the Sagittarius Stream, and the Virgo Overdensity, using turnoff stars from the Sloan Digital Sky Survey. It is also using the density of stars along tidal streams such as the Orphan Stream to constrain properties of the dwarf galaxy progenitor of this stream, including the dark matter portion. Both of these programs are enabled by a specially-built optimization package that uses differential evolution or particle swarm methods to find the optimal model parameters to fit a set of data. To fit the density of tidal streams, 20 parameters are simultaneously fit to each 2.5-degree-wide stripe of SDSS data. Five parameters describing the stellar and dark matter profile of the Orphan Stream progenitor and the time that the dwarf galaxy has been evolved through the Galactic potential are used in an n-body simulation that is then fit to observations of the Orphan Stream. New results from MilkyWay@home will be presented. This project was supported by NSF grant AST 16-15688, the NASA/NY Space Grant fellowship, and contributions made by The Marvin Clan, Babette Josephs, Manit Limlamai, and the 2015 Crowd Funding Campaign to Support Milky Way Research.

Documentation for the State Variables Package for the Groundwater-Management Process of MODFLOW-2005 (GWM-2005)

USGS Publications Warehouse

Ahlfeld, David P.; Barlow, Paul M.; Baker, Kristine M.

2011-01-01

Many groundwater-management problems are concerned with the control of one or more variables that reflect the state of a groundwater-flow system or a coupled groundwater/surface-water system. These system state variables include the distribution of heads within an aquifer, streamflow rates within a hydraulically connected stream, and flow rates into or out of aquifer storage. This report documents the new State Variables Package for the Groundwater-Management Process of MODFLOW-2005 (GWM-2005). The new package provides a means to explicitly represent heads, streamflows, and changes in aquifer storage as state variables in a GWM-2005 simulation. The availability of these state variables makes it possible to include system state in the objective function and enhances existing capabilities for constructing constraint sets for a groundwater-management formulation. The new package can be used to address groundwater-management problems such as the determination of withdrawal strategies that meet water-supply demands while simultaneously maximizing heads or streamflows, or minimizing changes in aquifer storage. Four sample problems are provided to demonstrate use of the new package for typical groundwater-management applications.

Symbolic inversion of control relationships in model-based expert systems

NASA Technical Reports Server (NTRS)

Thomas, Stan

1988-01-01

Symbolic inversion is examined from several perspectives. First, a number of symbolic algebra and mathematical tool packages were studied in order to evaluate their capabilities and methods, specifically with respect to symbolic inversion. Second, the KATE system (without hardware interface) was ported to a Zenith Z-248 microcomputer running Golden Common Lisp. The interesting thing about the port is that it allows the user to have measurements vary and components fail in a non-deterministic manner based upon random value from probability distributions. Third, INVERT was studied as currently implemented in KATE, its operation documented, some of its weaknesses identified, and corrections made to it. The corrections and enhancements are primarily in the way that logical conditions involving AND's and OR's and inequalities are processed. In addition, the capability to handle equalities was also added. Suggestions were also made regarding the handling of ranges in INVERT. Last, other approaches to the inversion process were studied and recommendations were made as to how future versions of KATE should perform symbolic inversion.

Production patterns of packaging waste categories generated at typical Mediterranean residential building worksites.

PubMed

González Pericot, N; Villoria Sáez, P; Del Río Merino, M; Liébana Carrasco, O

2014-11-01

The construction sector is responsible for around 28% of the total waste volume generated in Europe, which exceeds the amount of household waste. This has led to an increase of different research studies focusing on construction waste quantification. However, within the research studies made, packaging waste has been analyzed to a limited extent. This article focuses on the packaging waste stream generated in the construction sector. To this purpose current on-site waste packaging management has been assessed by monitoring ten Mediterranean residential building works. The findings of the experimental data collection revealed that the incentive measures implemented by the construction company to improve on-site waste sorting failed to achieve the intended purpose, showing low segregation ratios. Subsequently, through an analytical study the generation patterns for packaging waste are established, leading to the identification of the prevailing kinds of packaging and the products responsible for their generation. Results indicate that plastic waste generation maintains a constant trend throughout the whole construction process, while cardboard becomes predominant towards the end of the construction works with switches and sockets from the electricity stage. Understanding the production patterns of packaging waste will be beneficial for adapting waste management strategies to the identified patterns for the specific nature of packaging waste within the context of construction worksites. Copyright © 2014 Elsevier Ltd. All rights reserved.

Role of brown bears (Ursus arctos) in the flow of marine nitrogen into a terrestrial ecosystem.

PubMed

Hilderbrand, G V; Hanley, Thomas A; Robbins, Charles T; Schwartz, C C

1999-12-01

We quantified the amount, spatial distribution, and importance of salmon (Oncorhynchus spp.)-derived nitrogen (N) by brown bears (Ursus arctos) on the Kenai Peninsula, Alaska. We tested and confirmed the hypothesis that the stable isotope signature (δ 15 N) of N in foliage of white spruce (Picea glauca) was inversely proportional to the distance from salmon-spawning streams (r=-0.99 and P<0.05 in two separate watersheds). Locations of radio-collared brown bears, relative to their distance from a stream, were highly correlated with δ 15 N depletion of foliage across the same gradient (r=-0.98 and -0.96 and P<0.05 in the same two separate watersheds). Mean rates of redistribution of salmon-derived N by adult female brown bears were 37.2±2.9 kg/year per bear (range 23.1-56.3), of which 96% (35.7±2.7 kg/year per bear) was excreted in urine, 3% (1.1±0.1 kg/year per bear) was excreted in feces, and <1% (0.3± 0.1 kg/year per bear) was retained in the body. On an area basis, salmon-N redistribution rates were as high as 5.1±0.7 mg/m 2 per year per bear within 500 m of the stream but dropped off greatly with increasing distance. We estimated that 15.5-17.8% of the total N in spruce foliage within 500 m of the stream was derived from salmon. Of that, bears had distributed 83-84%. Thus, brown bears can be an important vector of salmon-derived N into riparian ecosystems, but their effects are highly variable spatially and a function of bear density.

Role of brown bears (Ursus arctos) in the flow of marine nitrogen into a terrestrial ecosystem

USGS Publications Warehouse

Hilderbrand, Grant V.; Hanley, Thomas A.; Robbins, Charles T.; Schwartz, C.C.

1999-01-01

We quantified the amount, spatial distribution, and importance of salmon (Oncorhynchus spp.)-derived nitrogen (N) by brown bears (Ursus arctos) on the Kenai Peninsula, Alaska. We tested and confirmed the hypothesis that the stable isotope signature (δ15N) of N in foliage of white spruce (Picea glauca) was inversely proportional to the distance from salmon-spawning streams (r=–0.99 and P<0.05 in two separate watersheds). Locations of radio-collared brown bears, relative to their distance from a stream, were highly correlated with δ15N depletion of foliage across the same gradient (r=–0.98 and –0.96 and P<0.05 in the same two separate watersheds). Mean rates of redistribution of salmon-derived N by adult female brown bears were 37.2±2.9 kg/year per bear (range 23.1–56.3), of which 96% (35.7±2.7 kg/year per bear) was excreted in urine, 3% (1.1±0.1 kg/year per bear) was excreted in feces, and <1% (0.3± 0.1 kg/year per bear) was retained in the body. On an area basis, salmon-N redistribution rates were as high as 5.1±0.7 mg/m2 per year per bear within 500 m of the stream but dropped off greatly with increasing distance. We estimated that 15.5–17.8% of the total N in spruce foliage within 500 m of the stream was derived from salmon. Of that, bears had distributed 83–84%. Thus, brown bears can be an important vector of salmon-derived N into riparian ecosystems, but their effects are highly variable spatially and a function of bear density.

FAC: Flexible Atomic Code

NASA Astrophysics Data System (ADS)

Gu, Ming Feng

2018-02-01

FAC calculates various atomic radiative and collisional processes, including radiative transition rates, collisional excitation and ionization by electron impact, energy levels, photoionization, and autoionization, and their inverse processes radiative recombination and dielectronic capture. The package also includes a collisional radiative model to construct synthetic spectra for plasmas under different physical conditions.

Circular economy of plastic packaging: Current practice and perspectives in Austria.

PubMed

Van Eygen, Emile; Laner, David; Fellner, Johann

2018-02-01

Plastics, especially from packaging, have gained increasing attention in waste management, driving many policy initiatives to improve the circularity of these materials in the economy to increase resource efficiency. In this context, the EU has proposed increasing targets to encourage the recycling of (plastic) packaging. To accurately calculate the recycling rates, detailed information on the flows of plastic packaging is needed. Therefore, the aim of this paper is to quantitatively and qualitatively investigate the waste management system for plastic packaging in Austria in 2013 using material flow analysis, taking into account the used product types and the polymer composition. The results show that 300,000 ± 3% t/a (35 kg/cap·a) of waste plastic packaging were produced, mainly composed of large and small films and small hollow bodies, including PET bottles. Correspondingly, the polymer composition of the waste stream was dominated by LDPE (46% ± 6%), PET (19% ± 4%) and PP (14% ± 6%). 58% ± 3% was collected separately, and regarding the final treatment, 26% ± 7% of the total waste stream was recovered as re-granulates, whereas the rest was thermally recovered in waste-to-energy plants (40% ± 3%) and the cement industry (33% ± 6%). The targets set by the EU and Austria were reached comfortably, although to reach the proposed future target major technological steps regarding collection and sorting will be needed. However, the current calculation point of the targets, i.e. on the input side of the recycling plant, is not deemed to be fully in line with the overall objective of the circular economy, namely to keep materials in the economy and prevent losses. It is therefore recommended that the targets be calculated with respect to the actual output of the recycling process, provided that the quality of the output products is maintained, to accurately assess the performance of the waste management system. Copyright © 2017 Elsevier Ltd. All rights reserved.

Estimating soil hydraulic parameters from transient flow experiments in a centrifuge using parameter optimization technique

USGS Publications Warehouse

Šimůnek, Jirka; Nimmo, John R.

2005-01-01

A modified version of the Hydrus software package that can directly or inversely simulate water flow in a transient centrifugal field is presented. The inverse solver for parameter estimation of the soil hydraulic parameters is then applied to multirotation transient flow experiments in a centrifuge. Using time‐variable water contents measured at a sequence of several rotation speeds, soil hydraulic properties were successfully estimated by numerical inversion of transient experiments. The inverse method was then evaluated by comparing estimated soil hydraulic properties with those determined independently using an equilibrium analysis. The optimized soil hydraulic properties compared well with those determined using equilibrium analysis and steady state experiment. Multirotation experiments in a centrifuge not only offer significant time savings by accelerating time but also provide significantly more information for the parameter estimation procedure compared to multistep outflow experiments in a gravitational field.

Full 40 km crustal reflection seismic datasets in several Indonesian basins

NASA Astrophysics Data System (ADS)

Dinkelman, M. G.; Granath, J. W.; Christ, J. M.; Emmet, P. A.; Bird, D. E.

2010-12-01

Long offset, deep penetration regional 2D seismic data sets have been acquired since 2002 by GX Technology in a number of regions worldwide (www.iongeo.com/Data_Libraries/Spans/). Typical surveys consist of 10+ lines located to image specific critical aspects of basin structure. Early surveys were processed to 20 km, but more recent ones have extended to 40-45 km from 16 sec records. Pre-stack time migration is followed by pre-stack depth migration using gravity and in some cases magnetic modeling to constrain the velocity structure. We illustrate several cases in the SE Asian and Australasian area. In NatunaSPAN™ two generations of inversion can be distinguished, one involving Paleogene faults with Neogene inversion and one involving strike slip-related uplift in the West Natuna Basin. Crustal structure in the very deep Neogene East Natuna Basin has also been imaged. The JavaSPAN™ program traced Paleogene sediments onto oceanic crust of the Flores Sea, thus equating back arc spreading there to the widespread Eocene extension. It also imaged basement in the Makassar Strait beneath as much as 6 km of Cenozoic sedimentary rocks that accumulated Eocene rift basins (the North and South Makassar basins) on the edge of Sundaland, the core of SE Asia. The basement is seismically layered: a noisy upper crust overlies a prominent 10 km thick transparent zone, the base of which marks another change to slightly noisier reflectivity. Eocene normal faults responsible for the opening of extensional basins root in the top of the transparent layer which may be Moho or a brittle-ductile transition within the extended continental crust. Of particular significance is the first image of thick Precambrian basins comprising the bulk of continental crust under the Arafura Sea in the ArafuraSPAN™ program. Four lines some 1200 km long located between Australia and New Guinea on the Arafura platform image a thin Phanerozoic section overlying a striking Precambrian basement composed of sedimentary and burial metamorphosed sedimentary rock that we divide into two packages on the basis of seismic character. The upper is 8-15 km of undeformed late Precambrian sediments the top of which ties Eocambrian rocks in wells in offshore New Guinea. This package appears to correlate to the Wessel Group in northern Australia. The lower package is composed of 10-15 km of strongly bedded, presumably burial metamorphosed rocks that make up the bulk of the lower crust. These may equate to any of a number of northern Australian Mesoproterozoic basins. This lower package offlaps ‘pods’ of seismically transparent basement (?Paleoproterozoic or Archean) that make up at most the lowermost 15 km of the 40 km PSDM line. Both Precambrian packages appear to be craton-margin sedimentary wedges, the younger overlapping the older. The SE extent of the lowermost package is deformed in a thrust system which may mark the event that detached it from its original underlying oceanic or transitional crust during cratonization. The SPAN programs are important new data sets to clarify and in some cases solve outstanding problems in basin architecture and tectonic evolution.

Packaging stiff polymers in small containers: A molecular dynamics study

NASA Astrophysics Data System (ADS)

Rapaport, D. C.

2016-09-01

The question of how stiff polymers are able to pack into small containers is particularly relevant to the study of DNA packaging in viruses. A reduced version of the problem based on coarse-grained representations of the main components of the system—the DNA polymer and the spherical viral capsid—has been studied by molecular dynamics simulation. The results, involving longer polymers than in earlier work, show that as polymers become more rigid there is an increasing tendency to self-organize as spools that wrap from the inside out, rather than the inverse direction seen previously. In the final state, a substantial part of the polymer is packed into one or more coaxial spools, concentrically layered with different orientations, a form of packaging achievable without twisting the polymer.

Analytic approximations to the modon dispersion relation. [in oceanography

NASA Technical Reports Server (NTRS)

Boyd, J. P.

1981-01-01

Three explicit analytic approximations are given to the modon dispersion relation developed by Flierl et al. (1980) to describe Gulf Stream rings and related phenomena in the oceans and atmosphere. The solutions are in the form of k(q), and are developed in the form of a power series in q for small q, an inverse power series in 1/q for large q, and a two-point Pade approximant. The low order Pade approximant is shown to yield a solution for the dispersion relation with a maximum relative error for the lowest branch of the function equal to one in 700 in the q interval zero to infinity.

Numerical Solutions for Supersonic Flow of an Ideal Gas Around Blunt Two-Dimensional Bodies

NASA Technical Reports Server (NTRS)

Fuller, Franklyn B.

1961-01-01

The method described is an inverse one; the shock shape is chosen and the solution proceeds downstream to a body. Bodies blunter than circular cylinders are readily accessible, and any adiabatic index can be chosen. The lower limit to the free-stream Mach number available in any case is determined by the extent of the subsonic field, which in turn depends upon the body shape. Some discussion of the stability of the numerical processes is given. A set of solutions for flows about circular cylinders at several Mach numbers and several values of the adiabatic index is included.

Mercury cycling in stream ecosystems. 2. Benthic methylmercury production and bed sediment - Pore water partitioning

USGS Publications Warehouse

Marvin-DiPasquale, Mark; Lutz, Michelle A; Brigham, Mark E.; Krabbenhoft, David P.; Aiken, George R.; Orem, William H.; Hall, Britt D.

2009-01-01

Mercury speciation, controls on methylmercury (MeHg) production, and bed sediment−pore water partitioning of total Hg (THg) and MeHg were examined in bed sediment from eight geochemically diverse streams where atmospheric deposition was the predominant Hg input. Across all streams, sediment THg concentrations were best described as a combined function of sediment percent fines (%fines; particles < 63 μm) and organic content. MeHg concentrations were best described as a combined function of organic content and the activity of the Hg(II)-methylating microbial community and were comparable to MeHg concentrations in streams with Hg inputs from industrial and mining sources. Whole sediment tin-reducible inorganic reactive Hg (Hg(II)R) was used as a proxy measure for the Hg(II) pool available for microbial methylation. In conjunction with radiotracer-derived rate constants of 203Hg(II) methylation, Hg(II)R was used to calculate MeHg production potential rates and to explain the spatial variability in MeHg concentration. The %Hg(II)R (of THg) was low (2.1 ± 5.7%) and was inversely related to both microbial sulfate reduction rates and sediment total reduced sulfur concentration. While sediment THg concentrations were higher in urban streams, %MeHg and %Hg(II)R were higher in nonurban streams. Sediment pore water distribution coefficients (log Kd’s) for both THg and MeHg were inversely related to the log-transformed ratio of pore water dissolved organic carbon (DOC) to bed sediment %fines. The stream with the highest drainage basin wetland density also had the highest pore water DOC concentration and the lowest log Kd’s for both THg and MeHg. No significant relationship existed between overlying water MeHg concentrations and those in bed sediment or pore water, suggesting upstream sources of MeHg production may be more important than local streambed production as a driver of water column MeHg concentration in drainage basins that receive Hg inputs primarily from atmospheric sources.

A 2D forward and inverse code for streaming potential problems

NASA Astrophysics Data System (ADS)

Soueid Ahmed, A.; Jardani, A.; Revil, A.

2013-12-01

The self-potential method corresponds to the passive measurement of the electrical field in response to the occurrence of natural sources of current in the ground. One of these sources corresponds to the streaming current associated with the flow of the groundwater. We can therefore apply the self- potential method to recover non-intrusively some information regarding the groundwater flow. We first solve the forward problem starting with the solution of the groundwater flow problem, then computing the source current density, and finally solving a Poisson equation for the electrical potential. We use the finite-element method to solve the relevant partial differential equations. In order to reduce the number of (petrophysical) model parameters required to solve the forward problem, we introduced an effective charge density tensor of the pore water, which can be determined directly from the permeability tensor for neutral pore waters. The second aspect of our work concerns the inversion of the self-potential data using Tikhonov regularization with smoothness and weighting depth constraints. This approach accounts for the distribution of the electrical resistivity, which can be independently and approximately determined from electrical resistivity tomography. A numerical code, SP2DINV, has been implemented in Matlab to perform both the forward and inverse modeling. Three synthetic case studies are discussed.

Bringing Legacy Visualization Software to Modern Computing Devices via Application Streaming

NASA Astrophysics Data System (ADS)

Fisher, Ward

2014-05-01

Planning software compatibility across forthcoming generations of computing platforms is a problem commonly encountered in software engineering and development. While this problem can affect any class of software, data analysis and visualization programs are particularly vulnerable. This is due in part to their inherent dependency on specialized hardware and computing environments. A number of strategies and tools have been designed to aid software engineers with this task. While generally embraced by developers at 'traditional' software companies, these methodologies are often dismissed by the scientific software community as unwieldy, inefficient and unnecessary. As a result, many important and storied scientific software packages can struggle to adapt to a new computing environment; for example, one in which much work is carried out on sub-laptop devices (such as tablets and smartphones). Rewriting these packages for a new platform often requires significant investment in terms of development time and developer expertise. In many cases, porting older software to modern devices is neither practical nor possible. As a result, replacement software must be developed from scratch, wasting resources better spent on other projects. Enabled largely by the rapid rise and adoption of cloud computing platforms, 'Application Streaming' technologies allow legacy visualization and analysis software to be operated wholly from a client device (be it laptop, tablet or smartphone) while retaining full functionality and interactivity. It mitigates much of the developer effort required by other more traditional methods while simultaneously reducing the time it takes to bring the software to a new platform. This work will provide an overview of Application Streaming and how it compares against other technologies which allow scientific visualization software to be executed from a remote computer. We will discuss the functionality and limitations of existing application streaming frameworks and how a developer might prepare their software for application streaming. We will also examine the secondary benefits realized by moving legacy software to the cloud. Finally, we will examine the process by which a legacy Java application, the Integrated Data Viewer (IDV), is to be adapted for tablet computing via Application Streaming.

Electric and magnetic galvanic distortion decomposition of tensor CSAMT data. Application to data from the Buchans Mine (Newfoundland, Canada)

NASA Astrophysics Data System (ADS)

Garcia, Xavier; Boerner, David; Pedersen, Laust B.

2003-09-01

We have developed a Marquardt-Levenberg inversion algorithm incorporating the effects of near-surface galvanic distortion into the electromagnetic (EM) response of a layered earth model. Different tests on synthetic model responses suggest that for the grounded source method, the magnetic distortion does not vanish for low frequencies. Including this effect is important, although to date it has been neglected. We have inverted 10 stations of controlled-source audio-magnetotellurics (CSAMT) data recorded near the Buchans Mine, Newfoundland, Canada. The Buchans Mine was one of the richest massive sulphide deposits in the world, and is situated in a highly resistive volcanogenic environment, substantially modified by thrust faulting. Preliminary work in the area demonstrated that the EM fields observed at adjacent stations show large differences due to the existence of mineralized fracture zones and variable overburden thickness. Our inversion results suggest a three-layered model that is appropriate for the Buchans Mine. The resistivity model correlates with the seismic reflection interpretation that documents the existence of two thrust packages. The distortion parameters obtained from the inversion concur with the synthetic studies that galvanic magnetic distortion is required to interpret the Buchans data since the magnetic component of the galvanic distortion does not vanish at low frequency.

Application of stochastic inversion in auroral tomography

NASA Astrophysics Data System (ADS)

Nygrén, T.; Markkanen, M.; Lehtinen, M.; Kaila, K.

1996-11-01

A software package originally developed for satellite radio tomography is briefly introduced and its use in two-dimensional auroral tomography is described. The method is based on stochastic inversion, i.e. finding the most probable values of the unknown volume emission rates once the optical measurements are made using either a scanning photometer or an auroral camera. A set of simulation results is shown for a different number and separations of optical instruments at ground level. It is observed that arcs with a thickness of a few kilometers and separated by a few tens of kilometers are easily reconstructed. The maximum values of the inversion results, however, are often weaker than in the model. The most obvious reason for this is the grid size, which cannot be much smaller than the arc thickness. The grid necessarily generates a spatial averaging effect broadening the arc cross-sections and reducing the peak values. Finally, results from TV-camera observations at Tromsø and Esrange are shown. Although these sites are separated by more than 200 km, arcs close to Tromsø have been successfully reconstructed. Acknowledgements. The work done by P. Henelius and E. Vilenius in programme development is gratefully acknowledged. Topical Editor D. Alcayde thanks I. Pryse and A. Vallance-Jones for their help in evaluating this paper.--> Correspondence to: T. Nygrén-->

Keep It Simple: A Lesson in Linking Teens to Health Care

ERIC Educational Resources Information Center

Eisler, Alexandra; Avellino, Lia; Chilcoat, Deborah; Schlanger, Karen

2016-01-01

The "Keep It Simple" package, which includes a short animated film (available online for streaming or download), a lesson plan, and supporting materials, was designed to be used with adolescents ages 15-19 to empower them to seek sexual and reproductive health care, and emphasize the availability of long-acting reversible contraception…

The learning of aquaponics practice in university

NASA Astrophysics Data System (ADS)

Agustina, T. W.; Rustaman, N. Y.; Riandi; Purwianingsih, W.

2018-05-01

This study aims to obtain a description of the perfomance capabilities of aquaponic technology and the assessment of product and packaging of harvest kale. The aquaponic practice used a STREAM (Science Technology Religion Art Matematics) approach. The method was explanatory sequential mixed method. The research was conducted on one class of Biology Education students in 6th semester. The sample was chosen purposively with 49 students. The study instruments are student worksheet, observation sheet, rubric performance and product assessment, interview sheet and field notes. The indicator of performance rubrics on the manufacture of aquaponic technology consisted of the product rubric, cultivation criteria and packing method of kale. The interview rubric is in the form of student constraints on the manufacture of aquaponics. Based on the results, most students have performance in designing technology that is categorized as enough up to good. Almost all students produce a very good kale harvest. Most of the students produce kale packaging products that are categorized as enough. The implications of this research are the learning of aquaponic with the STREAM approach can equip student’s performance and product capabilities.

Mobile Bay, Alabama area seen in Skylab 4 Earth Resources Experiment Package

NASA Technical Reports Server (NTRS)

1974-01-01

A near vertical view of the Mobile Bay, Alabama area seen in this Skylab 4 Earth Resources Experiment Package S190-B (five-inch earth terrain camera) photograph taken from the Skylab space station in earth orbit. North of Mobile the Tombigbee and Alabama Rivers join to form the Mobile River. Detailed configuration of the individual stream channels and boundaries can be defined as the Mobile River flows into Mobile Bay and into the Gulf of Mexico. The Mobile River Valley with its numerous stream channels is a distinct light shade in contrast to the dark green shade of the adjacent areas. The red coloration of Mobile Bay reflects the sediment load carried into the bay by the rivers. The westerly movement of the shore currents at the mouth of Mobile Bay is shown by the contrasting light blue of the sediment-laden current the the blue of the Gulf. Agricultural areas east and west of Mobile Bay are characterized by a rectangular pattern in green to white shades. Color variations may reflect

Pyrolysis of plastic packaging waste: A comparison of plastic residuals from material recovery facilities with simulated plastic waste.

PubMed

Adrados, A; de Marco, I; Caballero, B M; López, A; Laresgoiti, M F; Torres, A

2012-05-01

Pyrolysis may be an alternative for the reclamation of rejected streams of waste from sorting plants where packing and packaging plastic waste is separated and classified. These rejected streams consist of many different materials (e.g., polyethylene (PE), polypropylene (PP), polystyrene (PS), polyvinyl chloride (PVC), polyethylene terephthalate (PET), acrylonitrile butadiene styrene (ABS), aluminum, tetra-brik, and film) for which an attempt at complete separation is not technically possible or economically viable, and they are typically sent to landfills or incinerators. For this study, a simulated plastic mixture and a real waste sample from a sorting plant were pyrolyzed using a non-stirred semi-batch reactor. Red mud, a byproduct of the aluminum industry, was used as a catalyst. Despite the fact that the samples had a similar volume of material, there were noteworthy differences in the pyrolysis yields. The real waste sample resulted, after pyrolysis, in higher gas and solid yields and consequently produced less liquid. There were also significant differences noted in the compositions of the compared pyrolysis products. Copyright © 2011 Elsevier Ltd. All rights reserved.

Retrieving Single Scattering Albedos and Temperatures from CRISM Hyperspectral Data Using Neural Networks

NASA Astrophysics Data System (ADS)

He, L.; Arvidson, R. E.; O'Sullivan, J. A.

2018-04-01

We use a neural network (NN) approach to simultaneously retrieve surface single scattering albedos and temperature maps for CRISM data from 1.40 to 3.85 µm. It approximates the inverse of DISORT which simulates solar and emission radiative streams.

MATCH package for the ANL three-view geometry program. [For matching particle tracks from various views to obtain proper input for TVGP

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gieraltowski, G.F.

1976-02-01

The ANL MATCH package consists of a set of 13 subroutines which are linked to the current 12-foot and 15-foot versions of the ANL TVGP program. Their purpose is to match the tracks from the various measured views to obtain a proper matched set of tracks to be processed by TVGP. The MATCH package can effectively handle up to 20 tracks per event measured in 2 or 3 views and, in cases of ambiguous match solutions, allow up to 10 match ambiguities. A basic assumption made is that the same number of tracks is measured in each view. MATCH canmore » work in either two or three measured views with the assumption that, if only two views are measured, the last point measured on each track is a good representation of the true end-point of the track. This is not to say that, if this assumption is false, that MATCH cannot obtain a match solution. It is true, however, that the probability of obtaining a match solution is inversely proportional both to the number of tracks per vertex and to the momentum of the tracks. Current uses of MATCH are in obtaining match solutions for two-view K/sup -/p (6.5 GeV/c) events measured on POLLY III and in obtaining match solutions for events with large numbers of tracks (3 to 10) produced by an anti ..nu.. p interaction in the FNAL 15-foot bubble chamber with a spectrum of momentum values ranging from 5 to 25 Gev/c. (RWR)« less

Geographic variability in elevation and topographic constraints on the distribution of native and nonnative trout in the Great Basin

USGS Publications Warehouse

Warren, Dana R.; Dunham, Jason B.; Hockman-Wert, David

2014-01-01

Understanding local and geographic factors influencing species distributions is a prerequisite for conservation planning. Our objective in this study was to model local and geographic variability in elevations occupied by native and nonnative trout in the northwestern Great Basin, USA. To this end, we analyzed a large existing data set of trout presence (5,156 observations) to evaluate two fundamental factors influencing occupied elevations: climate-related gradients in geography and local constraints imposed by topography. We applied quantile regression to model upstream and downstream distribution elevation limits for each trout species commonly found in the region (two native and two nonnative species). With these models in hand, we simulated an upstream shift in elevation limits of trout distributions to evaluate potential consequences of habitat loss. Downstream elevation limits were inversely associated with latitude, reflecting regional gradients in temperature. Upstream limits were positively related to maximum stream elevation as expected. Downstream elevation limits were constrained topographically by valley bottom elevations in northern streams but not in southern streams, where limits began well above valley bottoms. Elevation limits were similar among species. Upstream shifts in elevation limits for trout would lead to more habitat loss in the north than in the south, a result attributable to differences in topography. Because downstream distributions of trout in the north extend into valley bottoms with reduced topographic relief, trout in more northerly latitudes are more likely to experience habitat loss associated with an upstream shift in lower elevation limits. By applying quantile regression to relatively simple information (species presence, elevation, geography, topography), we were able to identify elevation limits for trout in the Great Basin and explore the effects of potential shifts in these limits that could occur in response to changing climate conditions that alter streams directly (e.g., through changes in temperature and precipitation) or indirectly (e.g., through changing water use).

Regularized two-step brain activity reconstruction from spatiotemporal EEG data

NASA Astrophysics Data System (ADS)

Alecu, Teodor I.; Voloshynovskiy, Sviatoslav; Pun, Thierry

2004-10-01

We are aiming at using EEG source localization in the framework of a Brain Computer Interface project. We propose here a new reconstruction procedure, targeting source (or equivalently mental task) differentiation. EEG data can be thought of as a collection of time continuous streams from sparse locations. The measured electric potential on one electrode is the result of the superposition of synchronized synaptic activity from sources in all the brain volume. Consequently, the EEG inverse problem is a highly underdetermined (and ill-posed) problem. Moreover, each source contribution is linear with respect to its amplitude but non-linear with respect to its localization and orientation. In order to overcome these drawbacks we propose a novel two-step inversion procedure. The solution is based on a double scale division of the solution space. The first step uses a coarse discretization and has the sole purpose of globally identifying the active regions, via a sparse approximation algorithm. The second step is applied only on the retained regions and makes use of a fine discretization of the space, aiming at detailing the brain activity. The local configuration of sources is recovered using an iterative stochastic estimator with adaptive joint minimum energy and directional consistency constraints.

A secure transmission scheme of streaming media based on the encrypted control message

NASA Astrophysics Data System (ADS)

Li, Bing; Jin, Zhigang; Shu, Yantai; Yu, Li

2007-09-01

As the use of streaming media applications increased dramatically in recent years, streaming media security becomes an important presumption, protecting the privacy. This paper proposes a new encryption scheme in view of characteristics of streaming media and the disadvantage of the living method: encrypt the control message in the streaming media with the high security lever and permute and confuse the data which is non control message according to the corresponding control message. Here the so-called control message refers to the key data of the streaming media, including the streaming media header and the header of the video frame, and the seed key. We encrypt the control message using the public key encryption algorithm which can provide high security lever, such as RSA. At the same time we make use of the seed key to generate key stream, from which the permutation list P responding to GOP (group of picture) is derived. The plain text of the non-control message XORs the key stream and gets the middle cipher text. And then obtained one is permutated according to P. In contrast the decryption process is the inverse process of the above. We have set up a testbed for the above scheme and found our scheme is six to eight times faster than the conventional method. It can be applied not only between PCs but also between handheld devices.

NASA 60 GHz intersatellite communication link definition study. Baseline document

NASA Technical Reports Server (NTRS)

1986-01-01

The overall system and component concepts for a 60 GHz intersatellite communications link system (ICLS) are described. The ICLS was designed to augment the capabilities of the current Tracking and Data Relay Satellite System (TDRSS), providing a data rate capacity large enough to accommodate the expected rates for user satellites (USAT's) in the post-1995 timeframe. The use of 60 GHz for the anticipated successor to TDRSS, the Tracking and Data Acquisition System (TDAS), was selected because of current technology development that will enable multigigibit data rates. Additionally, the attenuation of the earth's atmosphere at 60 GHz means that there is virtually no possibility of terrestrially generated interference (intentional or accidental) or terrestrially based intercept. The ICLS includes the following functional areas: (1) the ICLS payload package on the GEO TDAS satellite that communicates simultaneously with up to five LEO USAT's; (2) the payload package on the USAT that communicates with the TDAS satellite; and (3) the crosslink payload package on the TDAS satellite that communicates with another TDAS satellite. Two methods of data relay on-board the TDAS spacecraft were addressed. One is a complete baseband system (demod and remod) with a bi-directional 2 Gbps data stream; the other is a channelized system wherein some of the channels are baseband and others are merely frequency translated before re-transmission. Descriptions of the TDAS antenna, transmitter, receiver, and mechanical designs are presented.

Interactive numerical flow visualization using stream surfaces

NASA Technical Reports Server (NTRS)

Hultquist, J. P. M.

1990-01-01

Particle traces and ribbons are often used to depict the structure of three-dimensional flowfields, but images produced using these models can be ambiguous. Stream surfaces offer a more visually intuitive method for the depiction of flowfields, but interactive response is needed to allow the user to place surfaces which reveal the essential features of a given flowfield. FLORA, a software package which supports the interactive calculation and display of stream surfaces on silicon graphics workstations, is described. Alternative methods for the integration of particle traces are examined, and calculation through computational space is found to provide rapid results with accuracy adequate for most purposes. Rapid calculation of traces is teamed with progressive refinement of appoximated surfaces. An initial approximation provides immediate user feedback, and subsequent improvement of the surface ensures that the final image is an accurate representation of the flowfield.

Comparison of Cortical and Subcortical Measurements in Normal Older Adults across Databases and Software Packages

PubMed Central

Rane, Swati; Plassard, Andrew; Landman, Bennett A.; Claassen, Daniel O.; Donahue, Manus J.

2017-01-01

This work explores the feasibility of combining anatomical MRI data across two public repositories namely, the Alzheimer’s Disease Neuroimaging Initiative (ADNI) and the Progressive Parkinson’s Markers Initiative (PPMI). We compared cortical thickness and subcortical volumes in cognitively normal older adults between datasets with distinct imaging parameters to assess if they would provide equivalent information. Three distinct datasets were identified. Major differences in data were scanner manufacturer and the use of magnetization inversion to enhance tissue contrast. Equivalent datasets, i.e., those providing similar volumetric measurements in cognitively normal controls, were identified in ADNI and PPMI. These were datasets obtained on the Siemens scanner with TI = 900 ms. Our secondary goal was to assess the agreement between subcortical volumes that are obtained with different software packages. Three subcortical measurement applications (FSL, FreeSurfer, and a recent multi-atlas approach) were compared. Our results show significant agreement in the measurements of caudate, putamen, pallidum, and hippocampus across the packages and poor agreement between measurements of accumbens and amygdala. This is likely due to their smaller size and lack of gray matter-white matter tissue contrast for accurate segmentation. This work provides a segue to combine imaging data from ADNI and PPMI to increase statistical power as well as to interrogate common mechanisms in disparate pathologies such as Alzheimer’s and Parkinson’s diseases. It lays the foundation for comparison of anatomical data acquired with disparate imaging parameters and analyzed with disparate software tools. Furthermore, our work partly explains the variability in the results of studies using different software packages. PMID:29756095

Comparison of Cortical and Subcortical Measurements in Normal Older Adults across Databases and Software Packages.

PubMed

Rane, Swati; Plassard, Andrew; Landman, Bennett A; Claassen, Daniel O; Donahue, Manus J

2017-01-01

This work explores the feasibility of combining anatomical MRI data across two public repositories namely, the Alzheimer's Disease Neuroimaging Initiative (ADNI) and the Progressive Parkinson's Markers Initiative (PPMI). We compared cortical thickness and subcortical volumes in cognitively normal older adults between datasets with distinct imaging parameters to assess if they would provide equivalent information. Three distinct datasets were identified. Major differences in data were scanner manufacturer and the use of magnetization inversion to enhance tissue contrast. Equivalent datasets, i.e., those providing similar volumetric measurements in cognitively normal controls, were identified in ADNI and PPMI. These were datasets obtained on the Siemens scanner with TI = 900 ms. Our secondary goal was to assess the agreement between subcortical volumes that are obtained with different software packages. Three subcortical measurement applications (FSL, FreeSurfer, and a recent multi-atlas approach) were compared. Our results show significant agreement in the measurements of caudate, putamen, pallidum, and hippocampus across the packages and poor agreement between measurements of accumbens and amygdala. This is likely due to their smaller size and lack of gray matter-white matter tissue contrast for accurate segmentation. This work provides a segue to combine imaging data from ADNI and PPMI to increase statistical power as well as to interrogate common mechanisms in disparate pathologies such as Alzheimer's and Parkinson's diseases. It lays the foundation for comparison of anatomical data acquired with disparate imaging parameters and analyzed with disparate software tools. Furthermore, our work partly explains the variability in the results of studies using different software packages.

Air Quality Monitor

NASA Technical Reports Server (NTRS)

1996-01-01

The Stak-Tracker CEM (Continuous Emission Monitor) Gas Analyzer is an air quality monitor capable of separating the various gases in a bulk exhaust stream and determining the amounts of individual gases present within the stream. The monitor is produced by GE Reuter- Stokes, a subsidiary of GE Corporate Research & Development Center. The Stak-Tracker uses a Langley Research Center software package which measures the concentration of a target gas by determining the degree to which molecules of that gas absorb an infrared beam. The system is environmental-friendly, fast and has relatively low installation and maintenance costs. It is applicable to gas turbines and various industries including glass, paper and cement.

Definition and solution of a stochastic inverse problem for the Manning's n parameter field in hydrodynamic models.

PubMed

Butler, T; Graham, L; Estep, D; Dawson, C; Westerink, J J

2015-04-01

The uncertainty in spatially heterogeneous Manning's n fields is quantified using a novel formulation and numerical solution of stochastic inverse problems for physics-based models. The uncertainty is quantified in terms of a probability measure and the physics-based model considered here is the state-of-the-art ADCIRC model although the presented methodology applies to other hydrodynamic models. An accessible overview of the formulation and solution of the stochastic inverse problem in a mathematically rigorous framework based on measure theory is presented. Technical details that arise in practice by applying the framework to determine the Manning's n parameter field in a shallow water equation model used for coastal hydrodynamics are presented and an efficient computational algorithm and open source software package are developed. A new notion of "condition" for the stochastic inverse problem is defined and analyzed as it relates to the computation of probabilities. This notion of condition is investigated to determine effective output quantities of interest of maximum water elevations to use for the inverse problem for the Manning's n parameter and the effect on model predictions is analyzed.

Definition and solution of a stochastic inverse problem for the Manning's n parameter field in hydrodynamic models

NASA Astrophysics Data System (ADS)

Butler, T.; Graham, L.; Estep, D.; Dawson, C.; Westerink, J. J.

2015-04-01

The uncertainty in spatially heterogeneous Manning's n fields is quantified using a novel formulation and numerical solution of stochastic inverse problems for physics-based models. The uncertainty is quantified in terms of a probability measure and the physics-based model considered here is the state-of-the-art ADCIRC model although the presented methodology applies to other hydrodynamic models. An accessible overview of the formulation and solution of the stochastic inverse problem in a mathematically rigorous framework based on measure theory is presented. Technical details that arise in practice by applying the framework to determine the Manning's n parameter field in a shallow water equation model used for coastal hydrodynamics are presented and an efficient computational algorithm and open source software package are developed. A new notion of "condition" for the stochastic inverse problem is defined and analyzed as it relates to the computation of probabilities. This notion of condition is investigated to determine effective output quantities of interest of maximum water elevations to use for the inverse problem for the Manning's n parameter and the effect on model predictions is analyzed.

Fallon, Nevada FORGE Gravity and Magnetics Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blankenship, Doug; Witter, Jeff; Carpenter, Thomas

This package contains principal facts for new gravity data collected September - November 2017 in support of the Fallon FORGE project. Also included are rock core density and magnetic susceptibility data for key core intervals, used in modeling 2D and 3D gravity inversions. Individual metadata summaries are provided as .pdf within each attached archive.

Model Variational Inverse Problems Governed by Partial Differential Equations

DTIC Science & Technology

2011-03-01

COMSOL Multiphysics [10], deal.II [4], dune [5], the FEniCS project [11, 20] and Sundance, a package from the Trilinos project [17]. These toolkits...Dupont, J. Hoffman, C. Johnson, R. Kirby, M. Larson, A. Logg, and R. Scott, The FEniCS project, tech. rep., 2003. [12] S. C. Eisenstat and H. F

Management of packaging waste in Poland--development agenda and accession to the EU.

PubMed

Grodzińska-Jurczak, Małgorzata; Zakowska, Hanna; Read, Adam

2004-06-01

In recent years the issue of the municipal waste in Poland has become increasingly topical, with a considerable rise in the waste generation, much of which can be attributed to a boom in product packaging (mainly plastic). The annual production of plastics packaging has been constantly increasing over the last 20 to 30 years, and now exceeds 3.7 million tons. Due to a lack of processing technologies and poorly developed selective segregation system, packaging waste is still treated as a part of the municipal solid waste (MSW) stream, most of which is landfilled. As a result of Poland's access to the European Union, previous legal regulations governing municipal waste management have been harmonized with those binding on the member countries. One of the main changes, the most revolutionary one, is to make entrepreneurs liable for environmental risks resulting from the introduction of packaging to the market, and for its recycling. In practice, all entrepreneurs are to ensure recovery, and recycling, of used packaging from products introduced to the market at the required level. In recent year, the required recycling levels were fulfilled for all types of materials but mainly by large institutions using grouped and transport packaging waste for that matter. Household packaging gathered in the selective segregation system at the municipalities was practically left alone. This paper is an attempt to describe the system and assess the first year of functioning of the new, revamped system of packaging waste management in Poland. Recommendations are made relating to those features that need to be included in packaging waste management systems in order to maximize their sustainability and harmonization with the EU legal system.

2D magnetotelluric inversion using reflection seismic images as constraints and application in the COSC project

NASA Astrophysics Data System (ADS)

Kalscheuer, Thomas; Yan, Ping; Hedin, Peter; Garcia Juanatey, Maria d. l. A.

2017-04-01

We introduce a new constrained 2D magnetotelluric (MT) inversion scheme, in which the local weights of the regularization operator with smoothness constraints are based directly on the envelope attribute of a reflection seismic image. The weights resemble those of a previously published seismic modification of the minimum gradient support method introducing a global stabilization parameter. We measure the directional gradients of the seismic envelope to modify the horizontal and vertical smoothness constraints separately. An appropriate choice of the new stabilization parameter is based on a simple trial-and-error procedure. Our proposed constrained inversion scheme was easily implemented in an existing Gauss-Newton inversion package. From a theoretical perspective, we compare our new constrained inversion to similar constrained inversion methods, which are based on image theory and seismic attributes. Successful application of the proposed inversion scheme to the MT field data of the Collisional Orogeny in the Scandinavian Caledonides (COSC) project using constraints from the envelope attribute of the COSC reflection seismic profile (CSP) helped to reduce the uncertainty of the interpretation of the main décollement. Thus, the new model gave support to the proposed location of a future borehole COSC-2 which is supposed to penetrate the main décollement and the underlying Precambrian basement.

The Global Ozone and Aerosol Profiles and Aerosol Hygroscopic Effect and Absorption Optical Depth (GOA2HEAD) Network Initiative

NASA Astrophysics Data System (ADS)

Gao, R. S.; Elkins, J. W.; Frost, G. J.; McComiskey, A. C.; Murphy, D. M.; Ogren, J. A.; Petropavlovskikh, I. V.; Rosenlof, K. H.

2014-12-01

Inverse modeling using measurements of ozone (O3) and aerosol is a powerful tool for deriving pollutant emissions. Because they have relatively long lifetimes, O3 and aerosol are transported over large distances. Frequent and globally spaced vertical profiles rather than ground-based measurements alone are therefore highly desired. Three requirements necessary for a successful global monitoring program are: Low equipment cost, low operation cost, and reliable measurements of known uncertainty. Conventional profiling using aircraft provides excellent data, but is cost prohibitive on a large scale. Here we describe a new platform and instruments meeting all three global monitoring requirements. The platform consists of a small balloon and an auto-homing glider. The glider is released from the balloon at about 5 km altitude, returning the light instrument package to the launch location, and allowing for consistent recovery of the payload. Atmospheric profiling can be performed either during ascent or descent (or both) depending on measurement requirements. We will present the specifications for two instrument packages currently under development. The first measures O3, RH, p, T, dry aerosol particle number and size distribution, and aerosol optical depth. The second measures dry aerosol particle number and size distribution, and aerosol absorption coefficient. Other potential instrument packages and the desired spatial/temporal resolution for the GOA2HEAD monitoring initiative will also be discussed.

Risk perception and communication: lessons for the food and food packaging industry.

PubMed

Renn, O

2005-10-01

Health risks are front-page news. Be it bovine spongiform encephalitis (BSE), surface ozone, or radiation from transmitter stations or mobile phones, the popular press puts out a constant stream of risk warnings and sensational reports about potential health threats. This paper examines how the general public perceives and assesses such information when it comes to food and food packaging risks. In the first part, the basic components of food risks are discussed and then compared with the perceptions of these risks. The main emphasis is on the risks from food packaging. The term 'perception' as used in cognitive psychology applies to the mental processes through which a person takes in, deals with and assesses information from the environment (physical and communicative) via the senses. The last part of the paper deals with the consequences of risk assessment and risk perception for risk management and risk communication.

Real-time inverse kinematics for the upper limb: a model-based algorithm using segment orientations.

PubMed

Borbély, Bence J; Szolgay, Péter

2017-01-17

Model based analysis of human upper limb movements has key importance in understanding the motor control processes of our nervous system. Various simulation software packages have been developed over the years to perform model based analysis. These packages provide computationally intensive-and therefore off-line-solutions to calculate the anatomical joint angles from motion captured raw measurement data (also referred as inverse kinematics). In addition, recent developments in inertial motion sensing technology show that it may replace large, immobile and expensive optical systems with small, mobile and cheaper solutions in cases when a laboratory-free measurement setup is needed. The objective of the presented work is to extend the workflow of measurement and analysis of human arm movements with an algorithm that allows accurate and real-time estimation of anatomical joint angles for a widely used OpenSim upper limb kinematic model when inertial sensors are used for movement recording. The internal structure of the selected upper limb model is analyzed and used as the underlying platform for the development of the proposed algorithm. Based on this structure, a prototype marker set is constructed that facilitates the reconstruction of model-based joint angles using orientation data directly available from inertial measurement systems. The mathematical formulation of the reconstruction algorithm is presented along with the validation of the algorithm on various platforms, including embedded environments. Execution performance tables of the proposed algorithm show significant improvement on all tested platforms. Compared to OpenSim's Inverse Kinematics tool 50-15,000x speedup is achieved while maintaining numerical accuracy. The proposed algorithm is capable of real-time reconstruction of standardized anatomical joint angles even in embedded environments, establishing a new way for complex applications to take advantage of accurate and fast model-based inverse kinematics calculations.

Quantifying watershed-scale groundwater loading and in-stream fate of nitrate using high-frequency water quality data

USGS Publications Warehouse

Miller, Matthew P.; Tesoriero, Anthony J.; Capel, Paul D.; Pellerin, Brian A.; Hyer, Kenneth E.; Burns, Douglas A.

2016-01-01

We describe a new approach that couples hydrograph separation with high-frequency nitrate data to quantify time-variable groundwater and runoff loading of nitrate to streams, and the net in-stream fate of nitrate at the watershed-scale. The approach was applied at three sites spanning gradients in watershed size and land use in the Chesapeake Bay watershed. Results indicate that 58-73% of the annual nitrate load to the streams was groundwater-discharged nitrate. Average annual first order nitrate loss rate constants (k) were similar to those reported in both modelling and in-stream process-based studies, and were greater at the small streams (0.06 and 0.22 d-1) than at the large river (0.05 d-1), but 11% of the annual loads were retained/lost in the small streams, compared with 23% in the large river. Larger streambed area to water volume ratios in small streams result in greater loss rates, but shorter residence times in small streams result in a smaller fraction of nitrate loads being removed than in larger streams. A seasonal evaluation of k values suggests that nitrate was retained/lost at varying rates during the growing season. Consistent with previous studies, streamflow and nitrate concentration were inversely related to k. This new approach for interpreting high-frequency nitrate data and the associated findings furthers our ability to understand, predict, and mitigate nitrate impacts on streams and receiving waters by providing insights into temporal nitrate dynamics that would be difficult to obtain using traditional field-based studies.

Ultrasonic simulation—Imagine3D and SimScan: Tools to solve the inverse problem for complex turbine components

NASA Astrophysics Data System (ADS)

Mair, H. D.; Ciorau, P.; Owen, D.; Hazelton, T.; Dunning, G.

2000-05-01

Two ultrasonic simulation packages: Imagine 3D and SIMSCAN have specifically been developed to solve the inverse problem for blade root and rotor steeple of low-pressure turbine. The software was integrated with the 3D drawing of the inspected parts, and with the dimensions of linear phased-array probes. SIMSCAN simulates the inspection scenario in both optional conditions: defect location and probe movement/refracted angle range. The results are displayed into Imagine 3-D, with a variety of options: rendering, display 1:1, grid, generated UT beam. The results are very useful for procedure developer, training and to optimize the phased-array probe inspection sequence. A spreadsheet is generated to correlate the defect coordinates with UT data (probe position, skew and refracted angle, UT path, and probe movement). The simulation models were validated during experimental work with phased-array systems. The accuracy in probe position is ±1 mm, and the refracted/skew angle is within ±0.5°. Representative examples of phased array focal laws/probe movement for a specific defect location, are also included.

On the recovery of gravity anomalies from high precision altimeter data

NASA Technical Reports Server (NTRS)

Lelgemann, D.

1976-01-01

A model for the recovery of gravity anomalies from high precision altimeter data is derived which consists of small correction terms to the inverse Stokes' formula. The influence of unknown sea surface topography in the case of meandering currents such as the Gulf Stream is discussed. A formula was derived in order to estimate the accuracy of the gravity anomalies from the known accuracy of the altimeter data. It is shown that for the case of known harmonic coefficients of lower order the range of integration in Stokes inverse formula can be reduced very much.

Towards Full-Waveform Ambient Noise Inversion

NASA Astrophysics Data System (ADS)

Sager, Korbinian; Ermert, Laura; Afanasiev, Michael; Boehm, Christian; Fichtner, Andreas

2017-04-01

Noise tomography usually works under the assumption that the inter-station ambient noise correlation is equal to a scaled version of the Green function between the two receivers. This assumption, however, is only met under specific conditions, e.g. wavefield diffusivity and equipartitioning, or the isotropic distribution of both mono- and dipolar uncorrelated noise sources. These assumptions are typically not satisfied in the Earth. This inconsistency inhibits the exploitation of the full waveform information contained in noise correlations in order to constrain Earth structure and noise generation. To overcome this limitation, we attempt to develop a method that consistently accounts for the distribution of noise sources, 3D heterogeneous Earth structure and the full seismic wave propagation physics. This is intended to improve the resolution of tomographic images, to refine noise source distribution, and thereby to contribute to a better understanding of both Earth structure and noise generation. First, we develop an inversion strategy based on a 2D finite-difference code using adjoint techniques. To enable a joint inversion for noise sources and Earth structure, we investigate the following aspects: i) the capability of different misfit functionals to image wave speed anomalies and source distribution and ii) possible source-structure trade-offs, especially to what extent unresolvable structure can be mapped into the inverted noise source distribution and vice versa. In anticipation of real-data applications, we present an extension of the open-source waveform modelling and inversion package Salvus (http://salvus.io). It allows us to compute correlation functions in 3D media with heterogeneous noise sources at the surface and the corresponding sensitivity kernels for the distribution of noise sources and Earth structure. By studying the effect of noise sources on correlation functions in 3D, we validate the aforementioned inversion strategy and prepare the workflow necessary for the first application of full waveform ambient noise inversion to a global dataset, for which a model for the distribution of noise sources is already available.

An explicit canopy BRDF model and inversion. [Bidirectional Reflectance Distribution Function

NASA Technical Reports Server (NTRS)

Liang, Shunlin; Strahler, Alan H.

1992-01-01

Based on a rigorous canopy radiative transfer equation, the multiple scattering radiance is approximated by the asymptotic theory, and the single scattering radiance calculation, which requires an numerical intergration due to considering the hotspot effect, is simplified. A new formulation is presented to obtain more exact angular dependence of the sky radiance distribution. The unscattered solar radiance and single scattering radiance are calculated exactly, and the multiple scattering is approximated by the delta two-stream atmospheric radiative transfer model. The numerical algorithms prove that the parametric canopy model is very accurate, especially when the viewing angles are smaller than 55 deg. The Powell algorithm is used to retrieve biospheric parameters from the ground measured multiangle observations.

Rapid identification of transience in streambed conductance by inversion of floodwave responses

NASA Astrophysics Data System (ADS)

Gianni, Guillaume; Richon, Julien; Perrochet, Pierre; Vogel, Alexandre; Brunner, Philip

2016-04-01

Streambed conductance controls the interaction between surface and groundwater. However, the streambed conductance is often subject to transience. Directly measuring hydraulic properties in a river yields only point values, is time-consuming and therefore not suited to detect transience of physical properties. Here, we present a method to continuously monitor transience in streambed conductance. Input data are time series of stream stage and near stream hydraulic head. The method is based on the inversion of floodwave responses. The analytical model consists of three parameters: x, the distance between streambank and an observation well, α, the aquifer diffusivity, and a the retardation coefficient that is inversely proportional to the streambed conductance. Estimation of a is carried out over successive time steps in order to identify transience in streambed conductance. The method is tested using synthetic data and is applied to field data from the Rhône River and its alluvial aquifer (Switzerland). The synthetic method demonstrated the robustness of the proposed methodology. Application of the method to the field data allowed identifying transience in streambed properties, following flood events in the Rhône. This method requires transience in the surface water, and the river should not change its width significantly with a rising water level. If these conditions are fulfilled, this method allows for a rapid and effective identification of transience in streambed conductance.

Imaging with cross-hole seismoelectric tomography

USGS Publications Warehouse

Araji, A.H.; Revil, A.; Jardani, A.; Minsley, Burke J.; Karaoulis, M.

2012-01-01

We propose a cross-hole imaging approach based on seismoelectric conversions (SC) associated with the transmission of seismic waves from seismic sources located in a borehole to receivers (electrodes) located in a second borehole. The seismoelectric (seismic-to-electric) problem is solved using Biot theory coupled with a generalized Ohm's law with an electrokinetic streaming current contribution. The components of the displacement of the solid phase, the fluid pressure, and the electrical potential are solved using a finite element approach with Perfect Match Layer (PML) boundary conditions for the seismic waves and boundary conditions mimicking an infinite material for the electrostatic problem. We develop an inversion algorithm using the electrical disturbances recorded in the second borehole to localize the position of the heterogeneities responsible for the SC. Because of the ill-posed nature of the inverse problem (inherent to all potential-field problems), regularization is used to constrain the solution at each time in the SC-time window comprised between the time of the seismic shot and the time of the first arrival of the seismic waves in the second borehole. All the inverted volumetric current source densities are aggregated together to produce an image of the position of the heterogeneities between the two boreholes. Two simple synthetic case studies are presented to test this concept. The first case study corresponds to a vertical discontinuity between two homogeneous sub-domains. The second case study corresponds to a poroelastic inclusion (partially saturated by oil) embedded into an homogenous poroelastic formation. In both cases, the position of the heterogeneity is recovered using only the electrical disturbances associated with the SC. That said, a joint inversion of the seismic and seismoelectric data could improve these results.

Finite Element Modeling and Analysis of Powder Stream in Low Pressure Cold Spray Process

NASA Astrophysics Data System (ADS)

Goyal, Tarun; Walia, Ravinderjit Singh; Sharma, Prince; Sidhu, Tejinder Singh

2016-07-01

Low pressure cold gas dynamic spray (LPCGDS) is a coating process that utilize low pressure gas (5-10 bars instead of 25-30 bars) and the radial injection of powder instead of axial injection with the particle range (1-50 μm). In the LPCGDS process, pressurized compressed gas is accelerated to the critical velocity, which depends on length of the divergent section of nozzle, the propellant gas and particle characteristics, and the diameters ratio of the inlet and outer diameters. This paper presents finite element modeling (FEM) of powder stream in supersonic nozzle wherein adiabatic gas flow and expansion of gas occurs in uniform manner and the same is used to evaluate the resultant temperature and velocity contours during coating process. FEM analyses were performed using commercial finite volume package, ANSYS CFD FLUENT. The results are helpful to predict the characteristics of powder stream at the exit of the supersonic nozzle.

Genetic assessment of the effects of streamscape succession on coho salmon Oncorhynchus kisutch colonization in recently deglaciated streams

USGS Publications Warehouse

Scribner, Kim T.; Soiseth, Chad; McGuire, Jeffrey J.; Sage, Kevin; Thorsteinson, Lyman K.; Nielsen, J. L.; Knudsen, E.

2017-01-01

Measures of genetic diversity within and among populations and historical geomorphological data on stream landscapes were used in model simulations based on approximate Bayesian computation (ABC) to examine hypotheses of the relative importance of stream features (geomorphology and age) associated with colonization events and gene flow for coho salmon Oncorhynchus kisutch breeding in recently deglaciated streams (50–240 years b.p.) in Glacier Bay National Park (GBNP), Alaska. Population estimates of genetic diversity including heterozygosity and allelic richness declined significantly and monotonically from the oldest and largest to youngest and smallest GBNP streams. Interpopulation variance in allele frequency increased with increasing distance between streams (r = 0·435, P < 0·01) and was inversely related to stream age (r = –0·281, P < 0·01). The most supported model of colonization involved ongoing or recent (<10 generations before sampling) colonization originating from large populations outside Glacier Bay proper into all other GBNP streams sampled. Results here show that sustained gene flow from large source populations is important to recently established O. kisutch metapopulations. Studies that document how genetic and demographic characteristics of newly founded populations vary associated with successional changes in stream habitat are of particular importance to and have significant implications for, restoration of declining or repatriation of extirpated populations in other regions of the species' native range.

Use of the Inverse Approach for the Manufacture and Decoration of Food Cans

NASA Astrophysics Data System (ADS)

Duffett, G. A.; Forgas, A.; Neamtu, L.; Naceur, H.; Batoz, J. L.; Guo, Y. Q.

2005-08-01

Innovation is a key objective in the metal packaging industry in order to produce new concepts, designs, shapes and printing. Simulation technology now allows both the can design as well as the manufacturing process to be carefully analysed before any physical prototypes or dies have been manufactured. These simulations are traditionally carried out using incremental simulation methodologies. However, much information may also be attained by using the inverse approach: the initial blank format for the can body as well as its lid may be optimised much faster, the actual decoration of the can may be evaluated and even calculated when deformation printing techniques are utilised. This paper presents some of the technical details relating to the inverse approach employed in Stampack to carry out simulations important for the manufacture of food cans that are shown via industrial.

Soil plutonium and cesium in stream channels and banks of Los Alamos liquid effluent-receiving areas.

PubMed

Nyhan, J W; White, G C; Trujillo, G

1982-10-01

Stream channel sediments and adjacent bank soils found in three intermittent streams used for treated liquid effluent disposal at Los Alamos, New Mexico were sampled to determine the distribution of 238Pu, 239,240Pu and 137Cs. Radionuclide concentrations and inventories were determined as functions of distance downstream from the waste outfall and from the center of the stream channel, soil sampling depth, stream channel-bank physiography, and the waste use history of each disposal area. Radionuclide concentrations in channel sediments were inversely related to distances up to 10 km downstream from the outfalls. For sites receiving appreciable waste effluent additions, contaminant concentrations in bank soils decreased with perpendicular distances greater than 0.38 m from the stream channel, and with stream bank sampling depths greater than 20-40 cm. Concentrations and total inventories of radionuclides in stream bank soils generally decreased as stream bank height increased. Inventory estimates of radionuclides in channel sediments exhibited coefficients of variation that ranged 0.41-2.6, reflecting the large variation in radionuclide concentrations at each site. Several interesting temporal relationships of these radionuclides in intermittent streams were gleaned from the varying waste use histories of the three effluent-receiving areas. Eleven yr after liquid wastes were added to one canyon, the major radionuclide inventories were found in the stream bank soils, unlike most of the other currently-used receiving areas. A period of time greater than 6 yr seems to be required before the plutonium in liquid wastes currently added to the canyon is approximately equilibrated with the plutonium in the bank soils. These observations are discussed relative to waste management practices in these southwestern intermittent streams.

Backwards compatible high dynamic range video compression

NASA Astrophysics Data System (ADS)

Dolzhenko, Vladimir; Chesnokov, Vyacheslav; Edirisinghe, Eran A.

2014-02-01

This paper presents a two layer CODEC architecture for high dynamic range video compression. The base layer contains the tone mapped video stream encoded with 8 bits per component which can be decoded using conventional equipment. The base layer content is optimized for rendering on low dynamic range displays. The enhancement layer contains the image difference, in perceptually uniform color space, between the result of inverse tone mapped base layer content and the original video stream. Prediction of the high dynamic range content reduces the redundancy in the transmitted data while still preserves highlights and out-of-gamut colors. Perceptually uniform colorspace enables using standard ratedistortion optimization algorithms. We present techniques for efficient implementation and encoding of non-uniform tone mapping operators with low overhead in terms of bitstream size and number of operations. The transform representation is based on human vision system model and suitable for global and local tone mapping operators. The compression techniques include predicting the transform parameters from previously decoded frames and from already decoded data for current frame. Different video compression techniques are compared: backwards compatible and non-backwards compatible using AVC and HEVC codecs.

Impingement of water droplets on wedges and double-wedge airfoils at supersonic speeds

NASA Technical Reports Server (NTRS)

Serafini, John S

1954-01-01

An analytical solution has been obtained for the equations of motion of water droplets impinging on a wedge in a two-dimensional supersonic flow field with a shock wave attached to the wedge. The closed-form solution yields analytical expressions for the equation of the droplet trajectory, the local rate of impingement and the impingement velocity at any point on the wedge surface, and the total rate of impingement. The analytical expressions are utilized to determine the impingement on the forward surfaces of diamond airfoils in supersonic flow fields with attached shock waves. The results presented include the following conditions: droplet diameters from 2 to 100 microns, pressure altitudes from sea level to 30,000 feet, free-stream static temperatures from 420 degrees r, free stream Mach numbers from 1.1 to 2.0, semiapex angles for the wedge from 1.14 degrees to 7.97 degrees, thickness-to-chord ratios for the diamond airfoil from 0.02 to 0.14, chord lengths from 1 to 20 feet, and angles of attack from zero to the inverse tangent of the airfoil thickness-to-chord ratio.

Si-rich SiNx based Kerr switch enables optical data conversion up to 12 Gbit/s

PubMed Central

Lin, Gong-Ru; Su, Sheng-Pin; Wu, Chung-Lun; Lin, Yung-Hsiang; Huang, Bo-Ji; Wang, Huai-Yung; Tsai, Cheng-Ting; Wu, Chih-I; Chi, Yu-Chieh

2015-01-01

Silicon photonic interconnection on chip is the emerging issue for next-generation integrated circuits. With the Si-rich SiNx micro-ring based optical Kerr switch, we demonstrate for the first time the wavelength and format conversion of optical on-off-keying data with a bit-rate of 12 Gbit/s. The field-resonant nonlinear Kerr effect enhances the transient refractive index change when coupling the optical data-stream into the micro-ring through the bus waveguide. This effectively red-shifts the notched dip wavelength to cause the format preserved or inversed conversion of data carried by the on-resonant or off-resonant probe, respectively. The Si quantum dots doped Si-rich SiNx strengthens its nonlinear Kerr coefficient by two-orders of magnitude higher than that of bulk Si or Si3N4. The wavelength-converted and cross-amplitude-modulated probe data-stream at up to 12-Gbit/s through the Si-rich SiNx micro-ring with penalty of −7 dB on transmission has shown very promising applicability to all-optical communication networks. PMID:25923653

Si-rich SiNx based Kerr switch enables optical data conversion up to 12 Gbit/s.

PubMed

Lin, Gong-Ru; Su, Sheng-Pin; Wu, Chung-Lun; Lin, Yung-Hsiang; Huang, Bo-Ji; Wang, Huai-Yung; Tsai, Cheng-Ting; Wu, Chih-I; Chi, Yu-Chieh

2015-04-29

Silicon photonic interconnection on chip is the emerging issue for next-generation integrated circuits. With the Si-rich SiNx micro-ring based optical Kerr switch, we demonstrate for the first time the wavelength and format conversion of optical on-off-keying data with a bit-rate of 12 Gbit/s. The field-resonant nonlinear Kerr effect enhances the transient refractive index change when coupling the optical data-stream into the micro-ring through the bus waveguide. This effectively red-shifts the notched dip wavelength to cause the format preserved or inversed conversion of data carried by the on-resonant or off-resonant probe, respectively. The Si quantum dots doped Si-rich SiNx strengthens its nonlinear Kerr coefficient by two-orders of magnitude higher than that of bulk Si or Si3N4. The wavelength-converted and cross-amplitude-modulated probe data-stream at up to 12-Gbit/s through the Si-rich SiNx micro-ring with penalty of -7 dB on transmission has shown very promising applicability to all-optical communication networks.

The Ocean Observatories Initiative: Data Acquisition Functions and Its Built-In Automated Python Modules

NASA Astrophysics Data System (ADS)

Smith, M. J.; Vardaro, M.; Crowley, M. F.; Glenn, S. M.; Schofield, O.; Belabbassi, L.; Garzio, L. M.; Knuth, F.; Fram, J. P.; Kerfoot, J.

2016-02-01

The Ocean Observatories Initiative (OOI), funded by the National Science Foundation, provides users with access to long-term datasets from a variety of oceanographic sensors. The Endurance Array in the Pacific Ocean consists of two separate lines off the coasts of Oregon and Washington. The Oregon line consists of 7 moorings, two cabled benthic experiment packages and 6 underwater gliders. The Washington line comprises 6 moorings and 6 gliders. Each mooring is outfitted with a variety of instrument packages. The raw data from these instruments are sent to shore via satellite communication and in some cases, via fiber optic cable. Raw data is then sent to the cyberinfrastructure (CI) group at Rutgers where it is aggregated, parsed into thousands of different data streams, and integrated into a software package called uFrame. The OOI CI delivers the data to the general public via a web interface that outputs data into commonly used scientific data file formats such as JSON, netCDF, and CSV. The Rutgers data management team has developed a series of command-line Python tools that streamline data acquisition in order to facilitate the QA/QC review process. The first step in the process is querying the uFrame database for a list of all available platforms. From this list, a user can choose a specific platform and automatically download all available datasets from the specified platform. The downloaded dataset is plotted using a generalized Python netcdf plotting routine that utilizes a data visualization toolbox called matplotlib. This routine loads each netCDF file separately and outputs plots by each available parameter. These Python tools have been uploaded to a Github repository that is openly available to help facilitate OOI data access and visualization.

MIDAS: Software for the detection and analysis of lunar impact flashes

NASA Astrophysics Data System (ADS)

Madiedo, José M.; Ortiz, José L.; Morales, Nicolás; Cabrera-Caño, Jesús

2015-06-01

Since 2009 we are running a project to identify flashes produced by the impact of meteoroids on the surface of the Moon. For this purpose we are employing small telescopes and high-sensitivity CCD video cameras. To automatically identify these events a software package called MIDAS was developed and tested. This package can also perform the photometric analysis of these flashes and estimate the value of the luminous efficiency. Besides, we have implemented in MIDAS a new method to establish which is the likely source of the meteoroids (known meteoroid stream or sporadic background). The main features of this computer program are analyzed here, and some examples of lunar impact events are presented.

A Semi-Analytical Solution to Time Dependent Groundwater Flow Equation Incorporating Stream-Wetland-Aquifer Interactions

NASA Astrophysics Data System (ADS)

Boyraz, Uǧur; Melek Kazezyılmaz-Alhan, Cevza

2017-04-01

Groundwater is a vital element of hydrologic cycle and the analytical & numerical solutions of different forms of groundwater flow equations play an important role in understanding the hydrological behavior of subsurface water. The interaction between groundwater and surface water bodies can be determined using these solutions. In this study, new hypothetical approaches are implemented to groundwater flow system in order to contribute to the studies on surface water/groundwater interactions. A time dependent problem is considered in a 2-dimensional stream-wetland-aquifer system. The sloped stream boundary is used to represent the interaction between stream and aquifer. The rest of the aquifer boundaries are assumed as no-flux boundary. In addition, a wetland is considered as a surface water body which lies over the whole aquifer. The effect of the interaction between the wetland and the aquifer is taken into account with a source/sink term in the groundwater flow equation and the interaction flow is calculated by using Darcy's approach. A semi-analytical solution is developed for the 2-dimensional groundwater flow equation in 5 steps. First, Laplace and Fourier cosine transforms are employed to obtain the general solution in Fourier and Laplace domain. Then, the initial and boundary conditions are applied to obtain the particular solution. Finally, inverse Fourier transform is carried out analytically and inverse Laplace transform is carried out numerically to obtain the final solution in space and time domain, respectively. In order to verify the semi-analytical solution, an explicit finite difference algorithm is developed and analytical and numerical solutions are compared for synthetic examples. The comparison of the analytical and numerical solutions shows that the analytical solution gives accurate results.

Production patterns of packaging waste categories generated at typical Mediterranean residential building worksites

DOE Office of Scientific and Technical Information (OSTI.GOV)

González Pericot, N., E-mail: natalia.gpericot@upm.es; Villoria Sáez, P., E-mail: paola.villoria@upm.es; Del Río Merino, M., E-mail: mercedes.delrio@upm.es

2014-11-15

Highlights: • On-site segregation level: 1.80%; training and motivation strategies were not effective. • 70% Cardboard waste: from switches and sockets during the building services stage. • 40% Plastic waste: generated during structures and partition works due to palletizing. • >50% Wood packaging waste, basically pallets, generated during the envelope works. - Abstract: The construction sector is responsible for around 28% of the total waste volume generated in Europe, which exceeds the amount of household waste. This has led to an increase of different research studies focusing on construction waste quantification. However, within the research studies made, packaging waste hasmore » been analyzed to a limited extent. This article focuses on the packaging waste stream generated in the construction sector. To this purpose current on-site waste packaging management has been assessed by monitoring ten Mediterranean residential building works. The findings of the experimental data collection revealed that the incentive measures implemented by the construction company to improve on-site waste sorting failed to achieve the intended purpose, showing low segregation ratios. Subsequently, through an analytical study the generation patterns for packaging waste are established, leading to the identification of the prevailing kinds of packaging and the products responsible for their generation. Results indicate that plastic waste generation maintains a constant trend throughout the whole construction process, while cardboard becomes predominant towards the end of the construction works with switches and sockets from the electricity stage. Understanding the production patterns of packaging waste will be beneficial for adapting waste management strategies to the identified patterns for the specific nature of packaging waste within the context of construction worksites.« less

Data package for the Low-Level Waste Disposal Development and Demonstration Program environmental impact statement: Volume 2, Appendices E-O

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ketelle, R.H.

1988-09-01

This volume contains 11 appendices to the main document in Volume 1. Topics in Volume 2 include hydrologic data for a proposed solid waste storage area, soil characterizations, well logs, surface water discharge data, water quality data, atmospheric precipitation and stream flow, a small mammal survey, and general ecological information. (TEM)

Evaluation of rotor axial vibrations in a turbo pump unit equipped with an automatic unloading machine

NASA Astrophysics Data System (ADS)

Martsynkovskyy, V. A.; Deineka, A.; Kovalenko, V.

2017-08-01

The article presents forced axial vibrations of the rotor with an automatic unloading machine in an oxidizer pump. A feature of the design is the use in the autoloading system of slotted throttles with mutually inverse throttling. Their conductivity is determined by a numerical experiment in the ANSYS CFX software package.

[Electrochemical methods of control of iodine contents in drinks].

PubMed

Zakharova, E A; Slepchenko, G B; Kolpakova, E Iu

2001-01-01

The simple and express methods of determination of iodide ions (0.01-0.20 mg/decimeter3) in iodine-enriched drinks by potentiometry and inversion voltamperometry were developed. The studies on influencing a storage time hermetically packaged carbonated beverages, a storage time of the depressurized drinks, stuff of ware on the contents of iodine in drinks are held.

Data from selected U.S. Geological Survey national stream water-quality monitoring networks (WQN) on CD-ROM

USGS Publications Warehouse

Alexander, R.B.; Ludtke, A.S.; Fitzgerald, K.K.; Schertz, T.L.

1996-01-01

Data from two U.S. Geological Survey (USGS) national stream water-quality monitoring networks, the National Stream Quality Accounting Network (NASQAN) and the Hydrologic Benchmark Network (HBN), are now available in a two CD-ROM set. These data on CD-ROM are collectively referred to as WQN, water-quality networks. Data from these networks have been used at the national, regional, and local levels to estimate the rates of chemical flux from watersheds, quantify changes in stream water quality for periods during the past 30 years, and investigate relations between water quality and streamflow as well as the relations of water quality to pollution sources and various physical characteristics of watersheds. The networks include 679 monitoring stations in watersheds that represent diverse climatic, physiographic, and cultural characteristics. The HBN includes 63 stations in relatively small, minimally disturbed basins ranging in size from 2 to 2,000 square miles with a median drainage basin size of 57 square miles. NASQAN includes 618 stations in larger, more culturally-influenced drainage basins ranging in size from one square mile to 1.2 million square miles with a median drainage basin size of about 4,000 square miles. The CD-ROMs contain data for 63 physical, chemical, and biological properties of water (122 total constituents including analyses of dissolved and water suspended-sediment samples) collected during more than 60,000 site visits. These data approximately span the periods 1962-95 for HBN and 1973-95 for NASQAN. The data reflect sampling over a wide range of streamflow conditions and the use of relatively consistent sampling and analytical methods. The CD-ROMs provide ancillary information and data-retrieval tools to allow the national network data to be properly and efficiently used. Ancillary information includes the following: descriptions of the network objectives and history, characteristics of the network stations and water-quality data, historical records of important changes in network sample collection and laboratory analytical methods, water reference sample data for estimating laboratory measurement bias and variability for 34 dissolved constituents for the period 1985-95, discussions of statistical methods for using water reference sample data to evaluate the accuracy of network stream water-quality data, and a bibliography of scientific investigations using national network data and other publications relevant to the networks. The data structure of the CD-ROMs is designed to allow users to efficiently enter the water-quality data to user-supplied software packages including statistical analysis, modeling, or geographic information systems. On one disc, all data are stored in ASCII form accessible from any computer system with a CD-ROM driver. The data also can be accessed using DOS-based retrieval software supplied on a second disc. This software supports logical queries of the water-quality data based on constituent concentrations, sample- collection date, river name, station name, county, state, hydrologic unit number, and 1990 population and 1987 land-cover characteristics for station watersheds. User-selected data may be output in a variety of formats including dBASE, flat ASCII, delimited ASCII, or fixed-field for subsequent use in other software packages.

Six easy steps on how to create a lean sigma value stream map for a multidisciplinary clinical operation.

PubMed

Lee, Emily; Grooms, Richard; Mamidala, Soumya; Nagy, Paul

2014-12-01

Value stream mapping (VSM) is a very useful technique to visualize and quantify the complex workflows often seen in clinical environments. VSM brings together multidisciplinary teams to identify parts of processes, collect data, and develop interventional ideas. An example involving pediatric MRI with general anesthesia VSM is outlined. As the process progresses, the map shows a large delay between the fax referral and the date of the scheduled and registered appointment. Ideas for improved efficiency and metrics were identified to measure improvement within a 6-month period, and an intervention package was developed for the department. Copyright © 2014. Published by Elsevier Inc.

Evidence for acid-precipitation-induced trends in stream chemistry at hydrologic bench-mark stations

USGS Publications Warehouse

Smith, Richard A.; Alexander, Richard B.

1983-01-01

Ten- to 15-year water-quality records from a network of headwater sampling stations show small declines in stream sulfate concentrations at stations in the northeastern quarter of the Nation and small increases in sulfate at most southeastern and western sites. The regional pattern of stream sulfate trends is similar to that reported for trends in S02 emissions to the atmosphere during the same period. Trends in the ratio of alkalinity to total major cation concentrations at the stations follow an inverse pattern of small increases in the Northeast and small, but widespread decreases elsewhere. The undeveloped nature of the sampled basins and the magnitude and direction of observed changes in relation to SO2 emissions support the hypothesis that the observed patterns in water quality trends reflect regional changes in the rates of acid deposition.

Introducing an R-package for calculating channel width and other basic metrics for irregular river polygons

NASA Astrophysics Data System (ADS)

Golly, Antonius; Turowski, Jens

2017-04-01

The width of fluvial streams and channel beds is an important metric for a large number of hydraulic, geomorphic and ecologic applications. For example, for a given discharge the local channel width determines the water flow velocity and thus the sediment transport capacity of a reach. Since streams often have irregular shapes with uneven channel banks, the channel width strongly varies along the channel. Although, the geometry of streams or their beds can be measured easily in the field (e.g. with a Total Station or GPS) or from maps or aerial images in a GIS, the width of the stream cannot be identified objectively without further data processing, since the results are more or less irregular polygons with sometimes bended shapes. An objective quantification of the channel width and other metrics requires automated algorithms that are applicable over a range of channel shapes and spatial scales. Here, we present a lightweight software suite with a small number of functions that process 2D or 3D geometrical data of channels or channel beds. The software, written as an R-package, accepts various text data formats and can be configured through five parameters. It creates interactive overview plots (if desired) and produces three basic channel metrics: the centerline, the channel width along the centerline and the slope along the centerline. The centerline is an optimized line that minimizes the distances to both channel banks. This centerline gives also a measure for the real length and slope of the channel. From this centerline perpendicular transects are generated which allow for the calculation of the channel width where they intersect with the channel banks. Briefly, we present an example and demonstrate the importance of these metrics in a use case of a steep stream, the Erlenbach stream in Switzerland. We were motivated to develop and publish the algorithm in an open-source framework, since only proprietary solutions were available at that time. The software is developed in R and is published under GNU GPL meaning it is free to use, edit and copy. This makes the software available also to users who do not own a MATLAB or ARCMAP license for which similar products exist.

Hydrology and Alkalinity Regulation of Soft Florida Waters: An Integrated Assessment

NASA Astrophysics Data System (ADS)

Stauffer, Robert E.; Canfield, Daniel E., Jr.

1992-06-01

Natural waters in ridge provinces of Florida and southeast Georgia were classified geographically, by degrees of cultural disturbance, and according to the dominant hydrologic and biogeochemical processes controlling chemistry. The ionic composition of lakes, upland streams, and surficial aquifer (water table) springs in relatively undeveloped catchments reflects the geographic variations in bulk deposition corrected for evapotranspiration (Na, Cl), plus a slight gain (net watershed mobilization) of Mg, and partial to nearly complete losses (net retention) of nitrate, sulfate, Ca, and K. Recharge to the Floridan aquifer in infertile, forested, sandy ridge provinces of northern Florida contains 360-580 μmol CO2. On the basis of indirect geochemical evidence, sulfate retention appears less important in lake sediments than in the region's highly weathered, ferruginous, kaolinitic, sand soils. Silica concentrations in upland streams and water table springs closely reflect the predicted equilibrium between kaolinite and gibbsite. Along with other evidence, the Si concentrations in ridge lakes indicate that seepage inflow is much more important than assumed in Baker et al.'s (1988) regional model. Lakes and streams are acidified either by humic acids or nonmarine sulfate but rarely by both, as reflected by the significant inverse correlation between these two components. Contrary to previous reports, there is no significant difference in alkalinity for culturally undisturbed lakes in the northern Trail versus southern Highlands Ridge areas.

Dynamic chirp control of all-optical format-converted pulsed data from a multi-wavelength inverse-optical-comb injected semiconductor optical amplifier.

PubMed

Lin, Gong-Ru; Pan, Ci-Ling; Yu, Kun-Chieh

2007-10-01

By spectrally and temporally reshaping the gain-window of a traveling-wave semiconductor optical amplifier (TWSOA) with a backward injected multi- or single-wavelength inverse-optical-comb, we theoretically and experimentally investigate the dynamic frequency chirp of the all-optical 10GBit/s Return-to-Zero (RZ) data-stream format-converted from the TWSOA under strong cross-gain depletion scheme. The multi-wavelength inverse-optical-comb injection effectively depletes the TWSOA gain spectrally and temporally, remaining a narrow gain-window and a reduced spectral linewidth and provide a converted RZ data with a smaller peak-to-peak frequency chirp of 6.7 GHz. Even at high inverse-optical-comb injection power and highly biased current condition for improving the operational bit-rate, the chirp of the multi-wavelength-injection converted RZ pulse is still 2.1-GHz smaller than that obtained by using single-wavelength injection at a cost of slight pulse-width broadening by 1 ps.

Influences of spatial and temporal variation on fish-habitat relationships defined by regression quantiles

USGS Publications Warehouse

Dunham, J.B.; Cade, B.S.; Terrell, J.W.

2002-01-01

We used regression quantiles to model potentially limiting relationships between the standing crop of cutthroat trout Oncorhynchus clarki and measures of stream channel morphology. Regression quantile models indicated that variation in fish density was inversely related to the width:depth ratio of streams but not to stream width or depth alone. The spatial and temporal stability of model predictions were examined across years and streams, respectively. Variation in fish density with width:depth ratio (10th-90th regression quantiles) modeled for streams sampled in 1993-1997 predicted the variation observed in 1998-1999, indicating similar habitat relationships across years. Both linear and nonlinear models described the limiting relationships well, the latter performing slightly better. Although estimated relationships were transferable in time, results were strongly dependent on the influence of spatial variation in fish density among streams. Density changes with width:depth ratio in a single stream were responsible for the significant (P < 0.10) negative slopes estimated for the higher quantiles (>80th). This suggests that stream-scale factors other than width:depth ratio play a more direct role in determining population density. Much of the variation in densities of cutthroat trout among streams was attributed to the occurrence of nonnative brook trout Salvelinus fontinalis (a possible competitor) or connectivity to migratory habitats. Regression quantiles can be useful for estimating the effects of limiting factors when ecological responses are highly variable, but our results indicate that spatiotemporal variability in the data should be explicitly considered. In this study, data from individual streams and stream-specific characteristics (e.g., the occurrence of nonnative species and habitat connectivity) strongly affected our interpretation of the relationship between width:depth ratio and fish density.

The Breakup of Temperature Inversions In Steep Valleys

NASA Astrophysics Data System (ADS)

Colette, A.; Street, R.

The purpose of this research is to model and provide a better understanding of tem- perature inversions breakup in steep valleys. The Advanced Regional Prediction Sys- tem (ARPS), a three-dimensional, compressible, and non-hydrostatic modeling tool developed by the Center for Analysis and Prediction of Storms at the University of Oklahoma was used. Many field studies indicate that the evolution of the convective and inversion layers are strongly dependant on the surrounding topography. In relatively open valleys, the convective boundary layer usually grows from the bottom of the valley while in steeper cases, the upslope morning winds affects the dynamic of the mixing layer resulting in the destruction of the inversion from its bottom and its top (see Whiteman 1980). ARPS allows one to perform accurate simulation of such situations. First, written in terrain following coordinates, it handles steep topographies; then its extensive radi- ation and surface flux packages provide a good treatment of land related processes. Moreover, ARPS accounts for the incidence angle of sunrays, differencing the ex- posed and non-exposed mountain slopes. However, it neglects the topographic shade which can delay the sunrise of a hour or more in steep valleys. A new subroutine described by Colette etal. 2002 is thus used to compute the projected shade on the surrounding topography. Simulations of temperature inversion breakup for various two-dimensional valleys are presented. The time scale of evolution of the mixing layer is in good agreement with field studies and, as expected, the convective boundary layer shows an asymmetry between east and west facing slopes. The different patterns of inversion breakup doc- umented by Whiteman are also reproduced. These simulations of idealized cases give a better understanding of inversion breakup in steep valleys. Our code is now being applied to a real case: the study of a peculiar wind, la Ora del Garda, caused by the interaction between a lake breeze and a valley wind in the Garda Valley (Northern Italy). Preliminary simulations will be presented. The support of AC by TotalFinaElf and RS by the Physical Meteorology Program of NSF and the VTMX Program of DoE is appreciated.

RSEIS and RFOC: Seismic Analysis in R

NASA Astrophysics Data System (ADS)

Lees, J. M.

2015-12-01

Open software is essential for reproducible scientific exchange. R-packages provide a platform for development of seismological investigation software that can be properly documented and traced for data processing. A suite of R packages designed for a wide range of seismic analysis is currently available in the free software platform called R. R is a software platform based on the S-language developed at Bell Labs decades ago. Routines in R can be run as standalone function calls, or developed in object-oriented mode. R comes with a base set of routines, and thousands of user developed packages. The packages developed at UNC include subroutines and interactive codes for processing seismic data, analyzing geographic information (GIS) and inverting data involved in a variety of geophysical applications. On CRAN (Comprehensive R Archive Network, http://www.r-project.org/) currently available packages related to seismic analysis are RSEIS, Rquake, GEOmap, RFOC, zoeppritz, RTOMO, and geophys, Rwave, PEIP, hht, rFDSN. These include signal processing, data management, mapping, earthquake location, deconvolution, focal mechanisms, wavelet transforms, Hilbert-Huang Transforms, tomographic inversion, and Mogi deformation among other useful functionality. All software in R packages is required to have detailed documentation, making the exchange and modification of existing software easy. In this presentation, I will focus on packages RSEIS and RFOC, showing examples from a variety of seismic analyses. The R approach has similarities to the popular (and expensive) MATLAB platform, although R is open source and free to down load.

Community-based benchmarking of the CMIP DECK experiments

NASA Astrophysics Data System (ADS)

Gleckler, P. J.

2015-12-01

A diversity of community-based efforts are independently developing "diagnostic packages" with little or no coordination between them. A short list of examples include NCAR's Climate Variability Diagnostics Package (CVDP), ORNL's International Land Model Benchmarking (ILAMB), LBNL's Toolkit for Extreme Climate Analysis (TECA), PCMDI's Metrics Package (PMP), the EU EMBRACE ESMValTool, the WGNE MJO diagnostics package, and CFMIP diagnostics. The full value of these efforts cannot be realized without some coordination. As a first step, a WCRP effort has initiated a catalog to document candidate packages that could potentially be applied in a "repeat-use" fashion to all simulations contributed to the CMIP DECK (Diagnostic, Evaluation and Characterization of Klima) experiments. Some coordination of community-based diagnostics has the additional potential to improve how CMIP modeling groups analyze their simulations during model-development. The fact that most modeling groups now maintain a "CMIP compliant" data stream means that in principal without much effort they could readily adopt a set of well organized diagnostic capabilities specifically designed to operate on CMIP DECK experiments. Ultimately, a detailed listing of and access to analysis codes that are demonstrated to work "out of the box" with CMIP data could enable model developers (and others) to select those codes they wish to implement in-house, potentially enabling more systematic evaluation during the model development process.

Effect of Free-Stream Turbulence Intensity on Transonic Airfoil with Shock Wave

NASA Astrophysics Data System (ADS)

Lutsenko, I.; Serikbay, M.; Akiltayev, A.; Rojas-Solórzano, L. R.; Zhao, Y.

2017-09-01

Airplanes regularly operate switching between various flight modes such as take-off, climb, cruise, descend and landing. During these flight conditions the free-stream approaching the wings undergo fundamental changes. In transonic flow conditions, typically in the military or aerospace applications, existence of nonlinear and unsteady effects of the airflow stream significantly alters the performance of an airfoil. This paper presents the influence of free-stream turbulence intensity on transonic flow over an airfoil in the presence of a weak shock wave. In particular, NACA 0012 airfoil performance at Ma∞ = 0.7 is considered in terms of drag, lift, turbulence kinetic energy, and turbulence eddy dissipation parameters under the influence of varying angle of attacks and free-stream turbulence. The finite volume method in a commercial CFD package ANSYS-CFX is used to perform the numerical analysis of the flow. Mesh refinement using a mesh-adaption technique based on velocity gradient is presented for more accurate prediction of shocks and boundary layers. A Shear Stress Transport (SST) turbulence model is validated against experimental data available in the literature. Numerical simulations were performed, with free stream turbulence intensity ranging from low (1%), medium (5%) to high (10%) levels. Results revealed that drag and lift coefficients are approximately the same at every aforementioned value of turbulence intensity. However, turbulence kinetic energy and eddy dissipation contours vary as turbulence intensity changes, but their changes are disproportionally small, compared with values adopted for free-stream turbulence.

LFSTAT - An R-Package for Low-Flow Analysis

NASA Astrophysics Data System (ADS)

Koffler, D.; Laaha, G.

2012-04-01

When analysing daily streamflow data focusing on low flow and drought, the state of the art is well documented in the Manual on Low-Flow Estimation and Prediction [1] published by the WMO. While it is clear what has to be done, it is not so clear how to preform the analysis and make the calculation as reproducible as possible. Our software solution expands the high preforming statistical open source software package R to analyse daily stream flow data focusing on low-flows. As command-line based programs are not everyone's preference, we also offer a plug-in for the R-Commander, an easy to use graphical user interface (GUI) to analyse data in R. Functionality includes estimation of the most important low-flow indices. Beside standardly used flow indices also BFI and Recession constants can be computed. The main applications of L-moment based Extreme value analysis and regional frequency analysis (RFA) are available. Calculation of streamflow deficits is another important feature. The most common graphics are prepared and can easily be modified according to the users preferences. Graphics include hydrographs for different periods, flexible streamflow deficit plots, baseflow visualisation, flow duration curves as well as double mass curves just to name a few. The package uses a S3-class called lfobj (low-flow objects). Once this objects are created, analysis can be preformed by mouse-click, and a script can be saved to make the analysis easy reproducible. At the moment we are offering implementation of all major methods proposed in the WMO manual on Low-flow Estimation and Predictions. Future plans include e.g. report export in odt-file using odf-weave. We hope to offer a tool to ease and structure the analysis of stream flow data focusing on low-flows and to make analysis transparent and communicable. The package is designed for hydrological research and water management practice, but can also be used in teaching students the first steps in low-flow hydrology.

Combined free and forced convection heat transfer in magneto fluid mechanic pipe flow

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gardner, R.A.; Lo, Y.T.

1977-01-01

A study is made of fully developed, laminar, free-and-forced convection heat transfer in an electrically conducting fluid flowing in an electrically insulated, horizontal, circular pipe in a vertical transverse magnetic field. The normalized magnetofluidmechanic and energy equations are reduced to three coupled partial differential equations by the introduction of a stream function of the secondary flow. A perturbation solution is generated in inverse powers of the Lykoudis number, Ly = M/sup 2//..sqrt..Gr, which yields the influence of the magnetic field on the stream function of the secondary flow, axial velocity profiles, temperature profiles, and Nusselt number. 6 figures, 1 table.

A study of high density bit transition requirements versus the effects on BCH error correcting coding

NASA Technical Reports Server (NTRS)

Ingels, F.; Schoggen, W. O.

1981-01-01

Several methods for increasing bit transition densities in a data stream are summarized, discussed in detail, and compared against constraints imposed by the 2 MHz data link of the space shuttle high rate multiplexer unit. These methods include use of alternate pulse code modulation waveforms, data stream modification by insertion, alternate bit inversion, differential encoding, error encoding, and use of bit scramblers. The psuedo-random cover sequence generator was chosen for application to the 2 MHz data link of the space shuttle high rate multiplexer unit. This method is fully analyzed and a design implementation proposed.

MendelianRandomization: an R package for performing Mendelian randomization analyses using summarized data.

PubMed

Yavorska, Olena O; Burgess, Stephen

2017-12-01

MendelianRandomization is a software package for the R open-source software environment that performs Mendelian randomization analyses using summarized data. The core functionality is to implement the inverse-variance weighted, MR-Egger and weighted median methods for multiple genetic variants. Several options are available to the user, such as the use of robust regression, fixed- or random-effects models and the penalization of weights for genetic variants with heterogeneous causal estimates. Extensions to these methods, such as allowing for variants to be correlated, can be chosen if appropriate. Graphical commands allow summarized data to be displayed in an interactive graph, or the plotting of causal estimates from multiple methods, for comparison. Although the main method of data entry is directly by the user, there is also an option for allowing summarized data to be incorporated from the PhenoScanner database of genotype-phenotype associations. We hope to develop this feature in future versions of the package. The R software environment is available for download from [https://www.r-project.org/]. The MendelianRandomization package can be downloaded from the Comprehensive R Archive Network (CRAN) within R, or directly from [https://cran.r-project.org/web/packages/MendelianRandomization/]. Both R and the MendelianRandomization package are released under GNU General Public Licenses (GPL-2|GPL-3). © The Author 2017. Published by Oxford University Press on behalf of the International Epidemiological Association.

Definition and solution of a stochastic inverse problem for the Manning’s n parameter field in hydrodynamic models

DOE PAGES

Butler, Troy; Graham, L.; Estep, D.; ...

2015-02-03

The uncertainty in spatially heterogeneous Manning’s n fields is quantified using a novel formulation and numerical solution of stochastic inverse problems for physics-based models. The uncertainty is quantified in terms of a probability measure and the physics-based model considered here is the state-of-the-art ADCIRC model although the presented methodology applies to other hydrodynamic models. An accessible overview of the formulation and solution of the stochastic inverse problem in a mathematically rigorous framework based on measure theory is presented in this paper. Technical details that arise in practice by applying the framework to determine the Manning’s n parameter field in amore » shallow water equation model used for coastal hydrodynamics are presented and an efficient computational algorithm and open source software package are developed. A new notion of “condition” for the stochastic inverse problem is defined and analyzed as it relates to the computation of probabilities. Finally, this notion of condition is investigated to determine effective output quantities of interest of maximum water elevations to use for the inverse problem for the Manning’s n parameter and the effect on model predictions is analyzed.« less

OceanCubes: An Affordable Cabled Observatory System for Integrated Long-Term, High Frequency Biological, Chemical, and Physical Measurements for Understanding Coastal Ecosystems

NASA Astrophysics Data System (ADS)

Gallager, S. M.

2016-02-01

Understanding how coastal ocean processes are forcing and/or responding to ecosystem change is a central premise in current oceanographic research and monitoring. A distributed, high capacity observing capability is necessary to address biological processes requiring high frequency observations on short ( turbulence, internal waves), moderate (typhoons), and decadal time scales (e.g., NAO, El Nino-SO, PDO). The current belief that ocean observing systems need to be expensive, large, difficult to deploy and limited in capacity was tested by developing OceanCubes, an end-to-end cabled observational system with real-time telemetry, state-of-the-art sensor packages, high level of expandability, and diver maintained to reduce operating costs. A modular approach allows for a scalable system that can grow over time to accommodate budgets. The control volume design allows for measurement of material flux and energy from the water column to the benthos at a rate of s-1. The sensor package is connected by electro-optical cable to shore providing the capability for internet-based teleoperation by scientists world-wide. The central node provides underwater mateable connections for > 22 serial and Ethernet-based sensors (CTD, four ADCPs, chlorophyll and CDOM fluorescence, O2, nitrate, pCO2, pH, a bio-optical package, a Continuous Plankton Imaging and Classification Sensor (CPICS) for mesoplankton, a pan and tilt webcam, and two stereo cameras to observe and track fish communities. ADCPs and temperature strings mark the corners of the 162,000 m3 control volume. Disparate data streams are remotely archived, correlated, and analyzed while plankton and fish are identified using state-of-the-art machine vision and learning techniques. Two OceanCubes have been installed in Japan (Okinawa and Oshima Island, Tokyo) and have survived several typhoon seasons. Two additional systems are planned for either side of the Panamanian Isthmus. Results of these systems will be discussed.

GENENG 2: A program for calculating design and off-design performance of two- and three-spool turbofans with as many as three nozzles

NASA Technical Reports Server (NTRS)

Fishbach, L. H.; Koenig, R. W.

1972-01-01

A computer program which calculates steady-state design and off-design jet engine performance for two- or three-spool turbofans with one, two, or three nozzles is described. Included in the report are complete FORTRAN 4 listings of the program with sample results for nine basic turbofan engines that can be calculated: (1) three-spool, three-stream engine; (2) two-spool, three-stream, boosted-fan engine; (3) two-spool, three-stream, supercharged-compressor engine; (4) three-spool, two-stream engine; (5) two-spool, two-stream engine; (6) three-spool, three-stream, aft-fan engine; (7) two-spool, three-stream, aft-fan engine; (8) two-spool, two-stream, aft-engine; and (9) three-spool, two-stream, aft-fan engine. The simulation of other engines by using logical variables built into the program is also described.

ERBE Geographic Scene and Monthly Snow Data

NASA Technical Reports Server (NTRS)

Coleman, Lisa H.; Flug, Beth T.; Gupta, Shalini; Kizer, Edward A.; Robbins, John L.

1997-01-01

The Earth Radiation Budget Experiment (ERBE) is a multisatellite system designed to measure the Earth's radiation budget. The ERBE data processing system consists of several software packages or sub-systems, each designed to perform a particular task. The primary task of the Inversion Subsystem is to reduce satellite altitude radiances to fluxes at the top of the Earth's atmosphere. To accomplish this, angular distribution models (ADM's) are required. These ADM's are a function of viewing and solar geometry and of the scene type as determined by the ERBE scene identification algorithm which is a part of the Inversion Subsystem. The Inversion Subsystem utilizes 12 scene types which are determined by the ERBE scene identification algorithm. The scene type is found by combining the most probable cloud cover, which is determined statistically by the scene identification algorithm, with the underlying geographic scene type. This Contractor Report describes how the geographic scene type is determined on a monthly basis.

Evaluation of optimal reservoir prospectivity using acoustic-impedance model inversion: A case study of an offshore field, western Niger Delta, Nigeria

NASA Astrophysics Data System (ADS)

Oyeyemi, Kehinde D.; Olowokere, Mary T.; Aizebeokhai, Ahzegbobor P.

2017-12-01

The evaluation of economic potential of any hydrocarbon field involves the understanding of the reservoir lithofacies and porosity variations. This in turns contributes immensely towards subsequent reservoir management and field development. In this study, integrated 3D seismic data and well log data were employed to assess the quality and prospectivity of the delineated reservoirs (H1-H5) within the OPO field, western Niger Delta using a model-based seismic inversion technique. The model inversion results revealed four distinct sedimentary packages based on the subsurface acoustic impedance properties and shale contents. Low acoustic impedance model values were associated with the delineated hydrocarbon bearing units, denoting their high porosity and good quality. Application of model-based inverted velocity, density and acoustic impedance properties on the generated time slices of reservoirs also revealed a regional fault and prospects within the field.

The formation and early evolution of meteoroid streams

NASA Astrophysics Data System (ADS)

Moorhead, Althea

2018-04-01

Meteor showers occur when the Earth encounters a stream of particles liberated from the surface of a comet or, more rarely, an asteroid. Initially, meteoroids follow a trajectory that is similar to that of their parent comet but modified by both the outward flow of gas from the nucleus and radiation pressure. Sublimating gases impart an “ejection velocity” to solid particles in the coma; this ejection velocity is larger for smaller particles but cannot exceed the speed of the gas itself. Radiation pressure provides a repulsive force that, like gravity, follows an inverse square law, and thus effectively reduces the central potential experienced by small particles. Depending on the optical properties of the particle, the speed of the particle may exceed its effective escape velocity; such particles will be unbound and hence excluded from meteoroid streams and meteor showers. These processes also modify the heliocentric distance at which meteoroid orbits cross the ecliptic plane, and can thus move portions of the stream out of range of the Earth. This talk presents recent work on these components of the early evolution of meteoroid streams and their implications for the meteoroid environment seen at Earth.

Validation Test Report for the Automated Optical Processing System (AOPS) Version 4.12

DTIC Science & Technology

2015-09-03

NPP) with the VIIRS sensor package as well as data from the Geostationary Ocean Color Imager (GOCI) sensor, aboard the Communication Ocean and...capability • Prepare the NRT Geostationary Ocean Color Imager (GOCI) data stream for integration into operations. • Improvements in sensor...Navy (DON) Environmental Data Records (EDRs) Expeditionary Warfare (EXW) Geostationary Ocean Color Imager (GOCI) Gulf of Mexico (GOM) Hierarchical

Langevin Dynamics Simulations of Genome Packing in Bacteriophage

PubMed Central

Forrey, Christopher; Muthukumar, M.

2006-01-01

We use Langevin dynamics simulations to study the process by which a coarse-grained DNA chain is packaged within an icosahedral container. We focus our inquiry on three areas of interest in viral packing: the evolving structure of the packaged DNA condensate; the packing velocity; and the internal buildup of energy and resultant forces. Each of these areas has been studied experimentally, and we find that we can qualitatively reproduce experimental results. However, our findings also suggest that the phage genome packing process is fundamentally different than that suggested by the inverse spool model. We suggest that packing in general does not proceed in the deterministic fashion of the inverse-spool model, but rather is stochastic in character. As the chain configuration becomes compressed within the capsid, the structure, energy, and packing velocity all become dependent upon polymer dynamics. That many observed features of the packing process are rooted in condensed-phase polymer dynamics suggests that statistical mechanics, rather than mechanics, should serve as the proper theoretical basis for genome packing. Finally we suggest that, as a result of an internal protein unique to bacteriophage T7, the T7 genome may be significantly more ordered than is true for bacteriophage in general. PMID:16617089

Langevin dynamics simulations of genome packing in bacteriophage.

PubMed

Forrey, Christopher; Muthukumar, M

2006-07-01

We use Langevin dynamics simulations to study the process by which a coarse-grained DNA chain is packaged within an icosahedral container. We focus our inquiry on three areas of interest in viral packing: the evolving structure of the packaged DNA condensate; the packing velocity; and the internal buildup of energy and resultant forces. Each of these areas has been studied experimentally, and we find that we can qualitatively reproduce experimental results. However, our findings also suggest that the phage genome packing process is fundamentally different than that suggested by the inverse spool model. We suggest that packing in general does not proceed in the deterministic fashion of the inverse-spool model, but rather is stochastic in character. As the chain configuration becomes compressed within the capsid, the structure, energy, and packing velocity all become dependent upon polymer dynamics. That many observed features of the packing process are rooted in condensed-phase polymer dynamics suggests that statistical mechanics, rather than mechanics, should serve as the proper theoretical basis for genome packing. Finally we suggest that, as a result of an internal protein unique to bacteriophage T7, the T7 genome may be significantly more ordered than is true for bacteriophage in general.

Flame Structure of Vitiated Fuel-Rich Inverse Diffusion Flames in a Cross-Flow (Postprint)

DTIC Science & Technology

2011-12-01

downstream of the slot. The flame length increases as the blowing ratio increases as a result of the greater mass of air which reacts. Ignition of...attributed to the greater penetration of the jet into the cross-stream. It is noted that the flame lengths are similar for the different blowing ratios

Inverting Residual Self-Potential Data for Redox Potentials of Contaminant Plumes

NASA Astrophysics Data System (ADS)

Linde, N.; Revil, A.

2007-05-01

Self-potential (SP) data can be separated into a streaming potential component that is associated with pore water flow and a redox potential component, which is sensitive to differences in the redox potentials of organic-rich contaminant plumes and the surroundings. This work presents the first inversion method that uses residual SP (i.e., corrected for the streaming potential component) to invert for the redox potentials of contaminant plumes. We consider a two-layered electrical conductivity structure, where the boundary corresponds to the water table. We assume that the electrical dipole sources are associated with microbial breakdown of contaminants at the water table. This geobattery model is hypothesized to exist (1) because the water table is associated with a strong redox gradient between highly reducing conditions within the contaminated groundwater (due to biodegradation and oxygen depletion) and the oxidized vadose zone, and (2) because the microbial biofilms and precipitation of metallic particles can provide an electron conductor to complete the circuit required for the geobattery. The inverse method was applied to residual SP estimated from SP measurements collected at the ground surface in the vicinity of the Entressen landfill, South of France. The estimated redox potentials correlate well with in situ measurements (correlation coefficient is 0.93) and the estimated amplitudes of the redox potentials are similar to those measured in situ. A sensitivity analysis reveals that meaningful estimates of the redox potential can be derived even if the electrical conductivity structure is only known within an order of magnitude. These results provide further evidence that the SP method can be useful to monitor the spreading of contaminants around landfills and to evaluate the efficiency of remediation programs.

STOCK: Structure mapper and online coarse-graining kit for molecular simulations

DOE PAGES

Bevc, Staš; Junghans, Christoph; Praprotnik, Matej

2015-03-15

We present a web toolkit STructure mapper and Online Coarse-graining Kit for setting up coarse-grained molecular simulations. The kit consists of two tools: structure mapping and Boltzmann inversion tools. The aim of the first tool is to define a molecular mapping from high, e.g. all-atom, to low, i.e. coarse-grained, resolution. Using a graphical user interface it generates input files, which are compatible with standard coarse-graining packages, e.g. VOTCA and DL_CGMAP. Our second tool generates effective potentials for coarse-grained simulations preserving the structural properties, e.g. radial distribution functions, of the underlying higher resolution model. The required distribution functions can be providedmore » by any simulation package. Simulations are performed on a local machine and only the distributions are uploaded to the server. The applicability of the toolkit is validated by mapping atomistic pentane and polyalanine molecules to a coarse-grained representation. Effective potentials are derived for systems of TIP3P (transferable intermolecular potential 3 point) water molecules and salt solution. The presented coarse-graining web toolkit is available at http://stock.cmm.ki.si.« less

GneimoSim: A Modular Internal Coordinates Molecular Dynamics Simulation Package

PubMed Central

Larsen, Adrien B.; Wagner, Jeffrey R.; Kandel, Saugat; Salomon-Ferrer, Romelia; Vaidehi, Nagarajan; Jain, Abhinandan

2014-01-01

The Generalized Newton Euler Inverse Mass Operator (GNEIMO) method is an advanced method for internal coordinates molecular dynamics (ICMD). GNEIMO includes several theoretical and algorithmic advancements that address longstanding challenges with ICMD simulations. In this paper we describe the GneimoSim ICMD software package that implements the GNEIMO method. We believe that GneimoSim is the first software package to include advanced features such as the equipartition principle derived for internal coordinates, and a method for including the Fixman potential to eliminate systematic statistical biases introduced by the use of hard constraints. Moreover, by design, GneimoSim is extensible and can be easily interfaced with third party force field packages for ICMD simulations. Currently, GneimoSim includes interfaces to LAMMPS, OpenMM, Rosetta force field calculation packages. The availability of a comprehensive Python interface to the underlying C++ classes and their methods provides a powerful and versatile mechanism for users to develop simulation scripts to configure the simulation and control the simulation flow. GneimoSim has been used extensively for studying the dynamics of protein structures, refinement of protein homology models, and for simulating large scale protein conformational changes with enhanced sampling methods. GneimoSim is not limited to proteins and can also be used for the simulation of polymeric materials. PMID:25263538

GneimoSim: a modular internal coordinates molecular dynamics simulation package.

PubMed

Larsen, Adrien B; Wagner, Jeffrey R; Kandel, Saugat; Salomon-Ferrer, Romelia; Vaidehi, Nagarajan; Jain, Abhinandan

2014-12-05

The generalized Newton-Euler inverse mass operator (GNEIMO) method is an advanced method for internal coordinates molecular dynamics (ICMD). GNEIMO includes several theoretical and algorithmic advancements that address longstanding challenges with ICMD simulations. In this article, we describe the GneimoSim ICMD software package that implements the GNEIMO method. We believe that GneimoSim is the first software package to include advanced features such as the equipartition principle derived for internal coordinates, and a method for including the Fixman potential to eliminate systematic statistical biases introduced by the use of hard constraints. Moreover, by design, GneimoSim is extensible and can be easily interfaced with third party force field packages for ICMD simulations. Currently, GneimoSim includes interfaces to LAMMPS, OpenMM, and Rosetta force field calculation packages. The availability of a comprehensive Python interface to the underlying C++ classes and their methods provides a powerful and versatile mechanism for users to develop simulation scripts to configure the simulation and control the simulation flow. GneimoSim has been used extensively for studying the dynamics of protein structures, refinement of protein homology models, and for simulating large scale protein conformational changes with enhanced sampling methods. GneimoSim is not limited to proteins and can also be used for the simulation of polymeric materials. © 2014 Wiley Periodicals, Inc.

Numerosity processing in early visual cortex.

PubMed

Fornaciai, Michele; Brannon, Elizabeth M; Woldorff, Marty G; Park, Joonkoo

2017-08-15

While parietal cortex is thought to be critical for representing numerical magnitudes, we recently reported an event-related potential (ERP) study demonstrating selective neural sensitivity to numerosity over midline occipital sites very early in the time course, suggesting the involvement of early visual cortex in numerosity processing. However, which specific brain area underlies such early activation is not known. Here, we tested whether numerosity-sensitive neural signatures arise specifically from the initial stages of visual cortex, aiming to localize the generator of these signals by taking advantage of the distinctive folding pattern of early occipital cortices around the calcarine sulcus, which predicts an inversion of polarity of ERPs arising from these areas when stimuli are presented in the upper versus lower visual field. Dot arrays, including 8-32dots constructed systematically across various numerical and non-numerical visual attributes, were presented randomly in either the upper or lower visual hemifields. Our results show that neural responses at about 90ms post-stimulus were robustly sensitive to numerosity. Moreover, the peculiar pattern of polarity inversion of numerosity-sensitive activity at this stage suggested its generation primarily in V2 and V3. In contrast, numerosity-sensitive ERP activity at occipito-parietal channels later in the time course (210-230ms) did not show polarity inversion, indicating a subsequent processing stage in the dorsal stream. Overall, these results demonstrate that numerosity processing begins in one of the earliest stages of the cortical visual stream. Copyright © 2017 Elsevier Inc. All rights reserved.

A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy

DOE PAGES

Pryor, Alan; Ophus, Colin; Miao, Jianwei

2017-10-25

Simulation of atomic-resolution image formation in scanning transmission electron microscopy can require significant computation times using traditional methods. A recently developed method, termed plane-wave reciprocal-space interpolated scattering matrix (PRISM), demonstrates potential for significant acceleration of such simulations with negligible loss of accuracy. In this paper, we present a software package called Prismatic for parallelized simulation of image formation in scanning transmission electron microscopy (STEM) using both the PRISM and multislice methods. By distributing the workload between multiple CUDA-enabled GPUs and multicore processors, accelerations as high as 1000 × for PRISM and 15 × for multislice are achieved relative to traditionalmore » multislice implementations using a single 4-GPU machine. We demonstrate a potentially important application of Prismatic, using it to compute images for atomic electron tomography at sufficient speeds to include in the reconstruction pipeline. Prismatic is freely available both as an open-source CUDA/C++ package with a graphical user interface and as a Python package, PyPrismatic.« less

A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy.

PubMed

Pryor, Alan; Ophus, Colin; Miao, Jianwei

2017-01-01

Simulation of atomic-resolution image formation in scanning transmission electron microscopy can require significant computation times using traditional methods. A recently developed method, termed plane-wave reciprocal-space interpolated scattering matrix (PRISM), demonstrates potential for significant acceleration of such simulations with negligible loss of accuracy. Here, we present a software package called Prismatic for parallelized simulation of image formation in scanning transmission electron microscopy (STEM) using both the PRISM and multislice methods. By distributing the workload between multiple CUDA-enabled GPUs and multicore processors, accelerations as high as 1000 × for PRISM and 15 × for multislice are achieved relative to traditional multislice implementations using a single 4-GPU machine. We demonstrate a potentially important application of Prismatic , using it to compute images for atomic electron tomography at sufficient speeds to include in the reconstruction pipeline. Prismatic is freely available both as an open-source CUDA/C++ package with a graphical user interface and as a Python package, PyPrismatic .

A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pryor, Alan; Ophus, Colin; Miao, Jianwei

Simulation of atomic-resolution image formation in scanning transmission electron microscopy can require significant computation times using traditional methods. A recently developed method, termed plane-wave reciprocal-space interpolated scattering matrix (PRISM), demonstrates potential for significant acceleration of such simulations with negligible loss of accuracy. In this paper, we present a software package called Prismatic for parallelized simulation of image formation in scanning transmission electron microscopy (STEM) using both the PRISM and multislice methods. By distributing the workload between multiple CUDA-enabled GPUs and multicore processors, accelerations as high as 1000 × for PRISM and 15 × for multislice are achieved relative to traditionalmore » multislice implementations using a single 4-GPU machine. We demonstrate a potentially important application of Prismatic, using it to compute images for atomic electron tomography at sufficient speeds to include in the reconstruction pipeline. Prismatic is freely available both as an open-source CUDA/C++ package with a graphical user interface and as a Python package, PyPrismatic.« less

Modeling and forecasting foreign exchange daily closing prices with normal inverse Gaussian

NASA Astrophysics Data System (ADS)

Teneng, Dean

2013-09-01

We fit the normal inverse Gaussian(NIG) distribution to foreign exchange closing prices using the open software package R and select best models by Käärik and Umbleja (2011) proposed strategy. We observe that daily closing prices (12/04/2008 - 07/08/2012) of CHF/JPY, AUD/JPY, GBP/JPY, NZD/USD, QAR/CHF, QAR/EUR, SAR/CHF, SAR/EUR, TND/CHF and TND/EUR are excellent fits while EGP/EUR and EUR/GBP are good fits with a Kolmogorov-Smirnov test p-value of 0.062 and 0.08 respectively. It was impossible to estimate normal inverse Gaussian parameters (by maximum likelihood; computational problem) for JPY/CHF but CHF/JPY was an excellent fit. Thus, while the stochastic properties of an exchange rate can be completely modeled with a probability distribution in one direction, it may be impossible the other way around. We also demonstrate that foreign exchange closing prices can be forecasted with the normal inverse Gaussian (NIG) Lévy process, both in cases where the daily closing prices can and cannot be modeled by NIG distribution.

Towards Full-Waveform Ambient Noise Inversion

NASA Astrophysics Data System (ADS)

Sager, K.; Ermert, L. A.; Boehm, C.; Fichtner, A.

2016-12-01

Noise tomography usually works under the assumption that the inter-station ambient noise correlation is equal to a scaled version of the Green function between the two receivers. This assumption, however, is only met under specific conditions, e.g. wavefield diffusivity and equipartitioning, or the isotropic distribution of both mono- and dipolar uncorrelated noise sources. These assumptions are typically not satisfied in the Earth. This inconsistency inhibits the exploitation of the full waveform information contained in noise correlations in order to constrain Earth structure and noise generation. To overcome this limitation, we attempt to develop a method that consistently accounts for the distribution of noise sources, 3D heterogeneous Earth structure and the full seismic wave propagation physics. This is intended to improve the resolution of tomographic images, to refine noise source location, and thereby to contribute to a better understanding of noise generation. We introduce an operator-based formulation for the computation of correlation functions and apply the continuous adjoint method that allows us to compute first and second derivatives of misfit functionals with respect to source distribution and Earth structure efficiently. Based on these developments we design an inversion scheme using a 2D finite-difference code. To enable a joint inversion for noise sources and Earth structure, we investigate the following aspects: The capability of different misfit functionals to image wave speed anomalies and source distribution. Possible source-structure trade-offs, especially to what extent unresolvable structure can be mapped into the inverted noise source distribution and vice versa. In anticipation of real-data applications, we present an extension of the open-source waveform modelling and inversion package Salvus, which allows us to compute correlation functions in 3D media with heterogeneous noise sources at the surface.

A Bayesian methodological framework for accommodating interannual variability of nutrient loading with the SPARROW model

NASA Astrophysics Data System (ADS)

Wellen, Christopher; Arhonditsis, George B.; Labencki, Tanya; Boyd, Duncan

2012-10-01

Regression-type, hybrid empirical/process-based models (e.g., SPARROW, PolFlow) have assumed a prominent role in efforts to estimate the sources and transport of nutrient pollution at river basin scales. However, almost no attempts have been made to explicitly accommodate interannual nutrient loading variability in their structure, despite empirical and theoretical evidence indicating that the associated source/sink processes are quite variable at annual timescales. In this study, we present two methodological approaches to accommodate interannual variability with the Spatially Referenced Regressions on Watershed attributes (SPARROW) nonlinear regression model. The first strategy uses the SPARROW model to estimate a static baseline load and climatic variables (e.g., precipitation) to drive the interannual variability. The second approach allows the source/sink processes within the SPARROW model to vary at annual timescales using dynamic parameter estimation techniques akin to those used in dynamic linear models. Model parameterization is founded upon Bayesian inference techniques that explicitly consider calibration data and model uncertainty. Our case study is the Hamilton Harbor watershed, a mixed agricultural and urban residential area located at the western end of Lake Ontario, Canada. Our analysis suggests that dynamic parameter estimation is the more parsimonious of the two strategies tested and can offer insights into the temporal structural changes associated with watershed functioning. Consistent with empirical and theoretical work, model estimated annual in-stream attenuation rates varied inversely with annual discharge. Estimated phosphorus source areas were concentrated near the receiving water body during years of high in-stream attenuation and dispersed along the main stems of the streams during years of low attenuation, suggesting that nutrient source areas are subject to interannual variability.

LFSTAT - Low-Flow Analysis in R

NASA Astrophysics Data System (ADS)

Koffler, Daniel; Laaha, Gregor

2013-04-01

The calculation of characteristic stream flow during dry conditions is a basic requirement for many problems in hydrology, ecohydrology and water resources management. As opposed to floods, a number of different indices are used to characterise low flows and streamflow droughts. Although these indices and methods of calculation have been well documented in the WMO Manual on Low-flow Estimation and Prediction [1], a comprehensive software was missing which enables a fast and standardized calculation of low flow statistics. We present the new software package lfstat to fill in this obvious gap. Our software package is based on the statistical open source software R, and expands it to analyse daily stream flow data records focusing on low-flows. As command-line based programs are not everyone's preference, we also offer a plug-in for the R-Commander, an easy to use graphical user interface (GUI) provided for R which is based on tcl/tk. The functionality of lfstat includes estimation methods for low-flow indices, extreme value statistics, deficit characteristics, and additional graphical methods to control the computation of complex indices and to illustrate the data. Beside the basic low flow indices, the baseflow index and recession constants can be computed. For extreme value statistics, state-of-the-art methods for L-moment based local and regional frequency analysis (RFA) are available. The tools for deficit characteristics include various pooling and threshold selection methods to support the calculation of drought duration and deficit indices. The most common graphics for low flow analysis are available, and the plots can be modified according to the user preferences. Graphics include hydrographs for different periods, flexible streamflow deficit plots, baseflow visualisation, recession diagnostic, flow duration curves as well as double mass curves, and many more. From a technical point of view, the package uses a S3-class called lfobj (low-flow objects). This objects are usual R-data-frames including date, flow, hydrological year and possibly baseflow information. Once these objects are created, analysis can be performed by mouse-click and a script can be saved to make the analysis easily reproducible. At the moment we are offering implementation of all major methods proposed in the WMO manual on Low-flow Estimation and Predictions [1]. Future plans include a dynamic low flow report in odt-file format using odf-weave which allows automatic updates if data or analysis change. We hope to offer a tool to ease and structure the analysis of stream flow data focusing on low-flows and to make analysis transparent and communicable. The package can also be used in teaching students the first steps in low-flow hydrology. The software packages can be installed from CRAN (latest stable) and R-Forge: http://r-forge.r-project.org (development version). References: [1] Gustard, Alan; Demuth, Siegfried, (eds.) Manual on Low-flow Estimation and Prediction. Geneva, Switzerland, World Meteorological Organization, (Operational Hydrology Report No. 50, WMO-No. 1029).

Adapting Better Interpolation Methods to Model Amphibious MT Data Along the Cascadian Subduction Zone.

NASA Astrophysics Data System (ADS)

Parris, B. A.; Egbert, G. D.; Key, K.; Livelybrooks, D.

2016-12-01

Magnetotellurics (MT) is an electromagnetic technique used to model the inner Earth's electrical conductivity structure. MT data can be analyzed using iterative, linearized inversion techniques to generate models imaging, in particular, conductive partial melts and aqueous fluids that play critical roles in subduction zone processes and volcanism. For example, the Magnetotelluric Observations of Cascadia using a Huge Array (MOCHA) experiment provides amphibious data useful for imaging subducted fluids from trench to mantle wedge corner. When using MOD3DEM(Egbert et al. 2012), a finite difference inversion package, we have encountered problems inverting, particularly, sea floor stations due to the strong, nearby conductivity gradients. As a work-around, we have found that denser, finer model grids near the land-sea interface produce better inversions, as characterized by reduced data residuals. This is partly to be due to our ability to more accurately capture topography and bathymetry. We are experimenting with improved interpolation schemes that more accurately track EM fields across cell boundaries, with an eye to enhancing the accuracy of the simulated responses and, thus, inversion results. We are adapting how MOD3DEM interpolates EM fields in two ways. The first seeks to improve weighting functions for interpolants to better address current continuity across grid boundaries. Electric fields are interpolated using a tri-linear spline technique, where the eight nearest electrical field estimates are each given weights determined by the technique, a kind of weighted average. We are modifying these weights to include cross-boundary conductivity ratios to better model current continuity. We are also adapting some of the techniques discussed in Shantsev et al (2014) to enhance the accuracy of the interpolated fields calculated by our forward solver, as well as to better approximate the sensitivities passed to the software's Jacobian that are used to generate a new forward model during each iteration of the inversion.

Effects of urban development in the Puget Lowland, Washington, on interannual streamflow patterns: Consequences for channel form and streambed disturbance

USGS Publications Warehouse

Konrad, Christopher P.; Booth, Derek B.; Burges, Stephen J.

2005-01-01

Recovery and protection of streams in urban areas depend on a comprehensive understanding of how human activities affect stream ecosystems. The hydrologic effects of urban development and the consequences for stream channel form and streambed stability were examined in 16 streams in the Puget Lowland, Washington, using three streamflow metrics that integrate storm‐scale effects of urban development over annual to decadal timescales: the fraction of time that streamflow exceeds the mean streamflow (TQmean), the coefficient of variation of annual maximum streamflow (CVAMF), and the fraction of time that streamflow exceeds the 0.5‐year flood (T0.5). Urban streams had low interannual variability in annual maximum streamflow and brief duration of frequent high flows, as indicated by significant correlations between road density and both CVAMFand T0.5. The broader distribution of streamflow indicated by TQmean may be affected by urban development, but differences in TQmean between streams are also likely a result of other physiographic factors. The increase in the magnitude of frequent high flows due to urban development but not their cumulative duration has important consequences for channel form and bed stability in gravel bed streams because geomorphic equilibrium depends on moderate duration streamflow (e.g., exceeded 10% of the time). Streams with low values of TQmean and T0.5 are narrower than expected from hydraulic geometry. Dimensionless boundary shear stress (t*) for the 0.5‐year flood was inversely related to T0.5 among the streams, indicating frequent and extensive bed disturbance in streams with low values of T0.5. Although stream channels expand and the size of bed material increases in response to urban streamflow patterns, these adjustments may be insufficient to reestablish the disturbance regime in urban streams because of the differential increase in the magnitude of frequent high flows causing disturbance relative to any changes in longer duration, moderate flows that establish a stable channel.

Water quality of streams and springs, Green River Basin, Wyoming

USGS Publications Warehouse

DeLong, L.L.

1986-01-01

Data concerning salinity, phosphorus, and trace elements in streams and springs within the Green River Basin in Wyoming are summarized. Relative contributions of salinity are shown through estimates of annual loads and average concentrations at 11 water quality measurements sites for the 1970-77 water years. A hypothetical diversion of 20 cu ft/sec from the Big Sandy River was found to lower dissolved solids concentration in the Green River at Green River, Wyoming. This effect was greatest during the winter months, lowering dissolved solids concentration as much as 13%. Decrease in dissolved solids concentrations during the remainder of the year was generally less than 2%. Unlike the dilution effect that overland runoff has on perennial streams, runoff in ephemeral and intermittent streams within the basin was found to be enriched by the flushing of salts from normally dry channels and basin surfaces. Relative concentrations of sodium and sulfate in streams within the basin appear to be controlled by solubility. A downstream trend of increasing relative concentrations of sodium, sulfate, or both with increasing dissolved solids concentration was evident in all streams sampled. Estimates of total phosphorus concentration at water quality measurement sites indicate that phosphorus is removed from the Green River water as it passes through Fontenelle and Flaming Gorge Reservoirs. Total phosphorus concentration at some stream sites is directly or inversely related to streamflow, but at most sites a simple relation between concentration and streamflow is not discernable. (USGS)

Flow profiling of a surface-acoustic-wave nanopump.

PubMed

Guttenberg, Z; Rathgeber, A; Keller, S; Rädler, J O; Wixforth, A; Kostur, M; Schindler, M; Talkner, P

2004-11-01

The flow profile in a capillary gap and the pumping efficiency of an acoustic micropump employing surface acoustic waves is investigated both experimentally and theoretically. Ultrasonic surface waves on a piezoelectric substrate strongly couple to a thin liquid layer and generate a quadrupolar streaming pattern within the fluid. We use fluorescence correlation spectroscopy and fluorescence microscopy as complementary tools to investigate the resulting flow profile. The velocity was found to depend on the applied power approximately linearly and to decrease with the inverse third power of the distance from the ultrasound generator on the chip. The found properties reveal acoustic streaming as a promising tool for the controlled agitation during microarray hybridization.

Flow profiling of a surface-acoustic-wave nanopump

NASA Astrophysics Data System (ADS)

Guttenberg, Z.; Rathgeber, A.; Keller, S.; Rädler, J. O.; Wixforth, A.; Kostur, M.; Schindler, M.; Talkner, P.

2004-11-01

The flow profile in a capillary gap and the pumping efficiency of an acoustic micropump employing surface acoustic waves is investigated both experimentally and theoretically. Ultrasonic surface waves on a piezoelectric substrate strongly couple to a thin liquid layer and generate a quadrupolar streaming pattern within the fluid. We use fluorescence correlation spectroscopy and fluorescence microscopy as complementary tools to investigate the resulting flow profile. The velocity was found to depend on the applied power approximately linearly and to decrease with the inverse third power of the distance from the ultrasound generator on the chip. The found properties reveal acoustic streaming as a promising tool for the controlled agitation during microarray hybridization.

Inversion of Attributes and Full Waveforms of Ground Penetrating Radar Data Using PEST

NASA Astrophysics Data System (ADS)

Jazayeri, S.; Kruse, S.; Esmaeili, S.

2015-12-01

We seek to establish a method, based on freely available software, for inverting GPR signals for the underlying physical properties (electrical permittivity, magnetic permeability, target geometries). Such a procedure should be useful for classroom instruction and for analyzing surface GPR surveys over simple targets. We explore the applicability of the PEST parameter estimation software package for GPR inversion (www.pesthomepage.org). PEST is designed to invert data sets with large numbers of parameters, and offers a variety of inversion methods. Although primarily used in hydrogeology, the code has been applied to a wide variety of physical problems. The PEST code requires forward model input; the forward model of the GPR signal is done with the GPRMax package (www.gprmax.com). The problem of extracting the physical characteristics of a subsurface anomaly from the GPR data is highly nonlinear. For synthetic models of simple targets in homogeneous backgrounds, we find PEST's nonlinear Gauss-Marquardt-Levenberg algorithm is preferred. This method requires an initial model, for which the weighted differences between model-generated data and those of the "true" synthetic model (the objective function) are calculated. In order to do this, the Jacobian matrix and the derivatives of the observation data in respect to the model parameters are computed using a finite differences method. Next, the iterative process of building new models by updating the initial values starts in order to minimize the objective function. Another measure of the goodness of the final acceptable model is the correlation coefficient which is calculated based on the method of Cooley and Naff. An accepted final model satisfies both of these conditions. Models to date show that physical properties of simple isolated targets against homogeneous backgrounds can be obtained from multiple traces from common-offset surface surveys. Ongoing work examines the inversion capabilities with more complex target geometries and heterogeneous soils.

Definition of two-phase flow behaviors for spacecraft design

NASA Technical Reports Server (NTRS)

Reinarts, Thomas R.; Best, Frederick R.; Miller, Katherine M.; Hill, Wayne S.

1991-01-01

Two-phase flow, thermal management systems are currently being considered as an alternative to conventional, single phase systems for future space missions because of their potential to reduce overall system mass, size, and pumping power requirements. Knowledge of flow regime transitions, heat transfer characteristics, and pressure drop correlations is necessary to design and develop two-phase systems. A boiling and condensing experiment was built in which R-12 was used as the working fluid. A two-phase pump was used to circulate a freon mixture and allow separate measurements of the vapor and liquid flow streams. The experimental package was flown five times aboard the NASA KC-135 aircraft which simulates zero-g conditions by its parabolic flight trajectory. Test conditions included stratified and annual flow regimes in 1-g which became bubbly, slug, or annular flow regimes on 0-g. A portion of this work is the analysis of adiabatic flow regimes. The superficial velocities of liquid and vapor have been obtained from the measured flow rates and are presented along with the observed flow regimes.

Projected ground-water development, ground-water levels, and stream-aquifer leakage in the South Fork Solomon River Valley between Webster Reservoir and Waconda Lake, north-central Kansas, 1979-2020

USGS Publications Warehouse

Kume, Jack; Lindgren, R.J.; Stullken, L.E.

1985-01-01

A two-dimensional finite difference computer model was used to project changes in the potentiometric surface, saturated thickness, and stream aquifer leakage in an alluvial aquifer resulting from four instances of projected groundwater development. The alluvial aquifer occurs in the South Fork Solomon River valley between Webster Reservoir and Waconda Lake in north-central Kansas. In the first two projections, pumpage for irrigation was held constant at 1978 rates throughout the projection period (1979-2020). In the second two projections, the 1978 pumpage was progressively increased each yr through 2020. In the second and fourth projections, surface water diversions in the Osborne Irrigation Canal were decreased by 50 %. For the third and fourth projections, each grid-block in the modeled area was classified initially as one of six types according to whether it represented irrigable or nonirrigable land, to its saturated thickness, to its location inside or outside the canal-river area, and to its pumping rate. The projected base-flow rates (leakage from the aquifer to the river) were lower during the irrigation season (June, July, and August) than during the other months of the yr because of the decline in hydraulic head produced by groundwater pumpage. Stream depletion, calculated as a decrease below the average (1970-78) estimated winter base-flow rate of 16.5 cu ft/sec, varied inversely with base flow. For the first two projections, a constant annual cycle of well pumpage and recharge was used throughout the projection period. Aquifer leakage to the river was nearly constant by the mid-to-late 1990's, implying that flow conditions had attained a stabilized annual cycle. The third and fourth projections never attained an annual stabilized cycle because the irrigation pumpage rate was increased each year. By the early 1980's, the hydraulic head had fallen below river stage, reversing the hydraulic gradient at the stream-aquifer interface and resulting in net leakage from the river to the aquifer during the summer months. By the early 1990 's, the projected potentiometric surface of the aquifer was lower than the river stage even during the winter and spring months. (Author 's abstract)

R package CityWaterBalance | Science Inventory | US EPA

EPA Pesticide Factsheets

CityWaterBalance provides a reproducible workflow for studying an urban water system. The network of urban water flows and storages can be modeled and visualized. Any city may be modeled with preassembled data, but data for US cities can be gathered via web services using this package and dependencies, geoknife and dataRetrieval. Urban water flows are difficult to comprehensively quantify. Although many important data sources are openly available, they are published by a variety of agencies in different formats, units, spatial and temporal resolutions. Increasingly, open data are made available via web services, which allow for automated, current retrievals. Integrating data streams and estimating the values of unmeasured urban water flows, however, remains needlessly time-consuming. In order to streamline a reproducible analysis, we have developed the CityWaterBalance package for the open source R language. The CityWaterBalance package for R is based on a simple model of the network of urban water flows and storages. The model may be run with data that has been pre-assembled by the user, or data can be retrieved by functions in CityWaterBalance and dependencies. CityWaterBalance can be used to quickly assemble a quantitative portrait of any urban water system. The systemic effects of water management decisions can be readily explored. Much of the data acquisition process for US cities can already be automated, while the package serves as a place-hold

Himawari Support In The CSPP-GEO Direct Broadcast Package

NASA Astrophysics Data System (ADS)

Cureton, G. P.; Martin, G.

2016-12-01

The Cooperative Institute for Meteorological Satellite Studies (CIMSS) has a long history of supporting the Direct Broadcast (DB) community for various sensors, recently with the International MODIS/AIRS Processing Package (IMAPP) for the NASA EOS polar orbiters Terra and Aqua, and the Community Satellite Processing Package (CSPP) for the NOAA polar orbiter Suomi-NPP. CSPP has been significant in encouraging the early usage of Suomi-NPP data by US and international weather agencies, and it is hoped that a new package, CSPP-GEO, will similarly encourage usage of DB data from GOES-R, Himawari, and other geostationary satellites. The support of Himawari-8 provides several challenges for the CSPP-GEO-Geocat package, which generally revolve around the greatly increased data rate associated with the subsatellite point footprint approaching 1km. CSPP-GEO-Geocat takes advantage of python shared-memory multiprocessor support to divide Himawari data into managable pieces, which are then farmed out to indvidual cores for processing by the underlying geocat code. The resulting product segments are then stitched together to make the final product NetCDF4 files. CSPP-GEO-Geocat will support high-data-rate HRIT input, as well as the reduced resolution HimwariCast direct broadcast data stream. Products supported by CSPP-GEO-Geocat include the level-1 reflective and emissive bands, as well as level-2 products like cloud mask, cloud type, optical depth and particle size, cloud top temperature and pressure.

Model-Based Feasibility Assessment of Membrane Biofilm Reactor to Achieve Simultaneous Ammonium, Dissolved Methane, and Sulfide Removal from Anaerobic Digestion Liquor

PubMed Central

Chen, Xueming; Liu, Yiwen; Peng, Lai; Yuan, Zhiguo; Ni, Bing-Jie

2016-01-01

In this study, the membrane biofilm reactor (MBfR) is proposed to achieve simultaneous removal of ammonium, dissolved methane, and sulfide from main-stream and side-stream anaerobic digestion liquors. To avoid dissolved methane stripping, oxygen is introduced through gas-permeable membranes, which also from the substratum for the growth of a biofilm likely comprising ammonium oxidizing bacteria (AOB), anaerobic ammonium oxidation (Anammox) bacteria, denitrifying anaerobic methane oxidation (DAMO) microorganisms, aerobic methane oxidizing bacteria (MOB), and sulfur oxidizing bacteria (SOB). A mathematical model is developed and applied to assess the feasibility of such a system and the associated microbial community structure under different operational conditions. The simulation studies demonstrate the feasibility of achieving high-level (>97.0%), simultaneous removal of ammonium, dissolved methane, and sulfide in the MBfRs from both main-stream and side-stream anaerobic digestion liquors through adjusting the influent surface loading (or hydraulic retention time (HRT)) and the oxygen surface loading. The optimal HRT was found to be inversely proportional to the corresponding oxygen surface loading. Under the optimal operational conditions, AOB, DAMO bacteria, MOB, and SOB dominate the biofilm of the main-stream MBfR, while AOB, Anammox bacteria, DAMO bacteria, and SOB coexist in the side-stream MBfR to remove ammonium, dissolved methane, and sulfide simultaneously. PMID:27112502

Evaluation of coal-mining impacts using numerical classification of benthic invertebrate data from streams draining a heavily mined basin in eastern Tennessee

USGS Publications Warehouse

Bradfield, A.D.

1986-01-01

Coal-mining impacts on Smoky Creek, eastern Tennessee were evaluated using water quality and benthic invertebrate data. Data from mined sites were also compared with water quality and invertebrate fauna found at Crabapple Branch, an undisturbed stream in a nearby basin. Although differences in water quality constituent concentrations and physical habitat conditions at sampling sites were apparent, commonly used measures of benthic invertebrate sample data such as number of taxa, sample diversity, number of organisms, and biomass were inadequate for determining differences in stream environments. Clustering algorithms were more useful in determining differences in benthic invertebrate community structure and composition. Normal (collections) and inverse (species) analyses based on presence-absence data of species of Ephemeroptera, Plecoptera, and Tricoptera were compared using constancy, fidelity, and relative abundance of species found at stations with similar fauna. These analyses identified differences in benthic community composition due to seasonal variations in invertebrate life histories. When data from a single season were examined, sites on tributary streams generally clustered separately from sites on Smoky Creek. These analyses compared with differences in water quality, stream size, and substrate characteristics between tributary sites and the more degraded main stem sites, indicated that numerical classification of invertebrate data can provide discharge-independent information useful in rapid evaluations of in-stream environmental conditions. (Author 's abstract)

A Paradox within the Time Value of Money: A Critical Thinking Exercise for Finance Students

ERIC Educational Resources Information Center

Delaney, Charles J.; Rich, Steven P.; Rose, John T.

2016-01-01

This study presents a paradox within the time value of money (TVM), namely, that the interest-principal sequence embedded in the payment stream of an amortized loan is exactly the opposite of the interest-principal sequence implicit in the present value of a matching annuity. We examine this inverse sequence, both mathematically and intuitively,…

Systolic VLSI Reed-Solomon Decoder

NASA Technical Reports Server (NTRS)

Shao, H. M.; Truong, T. K.; Deutsch, L. J.; Yuen, J. H.

1986-01-01

Decoder for digital communications provides high-speed, pipelined ReedSolomon (RS) error-correction decoding of data streams. Principal new feature of proposed decoder is modification of Euclid greatest-common-divisor algorithm to avoid need for time-consuming computations of inverse of certain Galois-field quantities. Decoder architecture suitable for implementation on very-large-scale integrated (VLSI) chips with negative-channel metaloxide/silicon circuitry.

Estimating parameters of a forest ecosystem C model with measurements of stocks and fluxes as joint constraints

Treesearch

Andrew D. Richardson; Mathew Williams; David Y. Hollinger; David J.P. Moore; D. Bryan Dail; Eric A. Davidson; Neal A. Scott; Robert S. Evans; Holly. Hughes

2010-01-01

We conducted an inverse modeling analysis, using a variety of data streams (tower-based eddy covariance measurements of net ecosystem exchange, NEE, of CO2, chamber-based measurements of soil respiration, and ancillary ecological measurements of leaf area index, litterfall, and woody biomass increment) to estimate parameters and initial carbon (C...

Stochastic approach for radionuclides quantification

NASA Astrophysics Data System (ADS)

Clement, A.; Saurel, N.; Perrin, G.

2018-01-01

Gamma spectrometry is a passive non-destructive assay used to quantify radionuclides present in more or less complex objects. Basic methods using empirical calibration with a standard in order to quantify the activity of nuclear materials by determining the calibration coefficient are useless on non-reproducible, complex and single nuclear objects such as waste packages. Package specifications as composition or geometry change from one package to another and involve a high variability of objects. Current quantification process uses numerical modelling of the measured scene with few available data such as geometry or composition. These data are density, material, screen, geometric shape, matrix composition, matrix and source distribution. Some of them are strongly dependent on package data knowledge and operator backgrounds. The French Commissariat à l'Energie Atomique (CEA) is developing a new methodology to quantify nuclear materials in waste packages and waste drums without operator adjustment and internal package configuration knowledge. This method suggests combining a global stochastic approach which uses, among others, surrogate models available to simulate the gamma attenuation behaviour, a Bayesian approach which considers conditional probability densities of problem inputs, and Markov Chains Monte Carlo algorithms (MCMC) which solve inverse problems, with gamma ray emission radionuclide spectrum, and outside dimensions of interest objects. The methodology is testing to quantify actinide activity in different kind of matrix, composition, and configuration of sources standard in terms of actinide masses, locations and distributions. Activity uncertainties are taken into account by this adjustment methodology.

An inverse inviscid method for the design of quasi-three dimensional rotating turbomachinery cascades

NASA Technical Reports Server (NTRS)

Bonataki, E.; Chaviaropoulos, P.; Papailiou, K. D.

1991-01-01

A new inverse inviscid method suitable for the design of rotating blade sections lying on an arbitrary axisymmetric stream-surface with varying streamtube width is presented. The geometry of the axisymmetric stream-surface and the streamtube width variation with meridional distance, the number of blades, the inlet flow conditions, the rotational speed and the suction and pressure side velocity distributions as functions of the normalized arc-length are given. The flow is considered irrotational in the absolute frame of reference and compressible. The output of the computation is the blade section that satisfies the above data. The method solves the flow equations on a (phi 1, psi) potential function-streamfunction plane for the velocity modulus, W and the flow angle beta; the blade section shape can then be obtained as part of the physical plane geometry by integrating the flow angle distribution along streamlines. The (phi 1, psi) plane is defined so that the monotonic behavior of the potential function is guaranteed, even in cases with high peripheral velocities. The method is validated on a rotating turbine case and used to design new blades. To obtain a closed blade, a set of closure conditions were developed and referred.

Impingement of water droplets on wedges and diamond airfoils at supersonic speeds

NASA Technical Reports Server (NTRS)

Serafini, John S

1953-01-01

An analytical solution has been obtained for the equations of motion of water droplets impinging on a wedge in a two-dimensional supersonic flow field with a shock wave attached to the wedge. The closed-form solution yields analytical expressions for the equation of the droplet trajectory, the local rate of impingement and the impingement velocity at any point on the wedge surface, and the total rate of impingement. The analytical expressions are utilized to determine the impingement on the forward surfaces of diamond airfoils in supersonic flow fields with attached shock waves. The results presented include the following conditions: droplet diameters from 2 to 100 microns, pressure altitudes from sea level to 30,000 feet, free-stream static temperatures from 420 degrees to 460 degrees R. Also, free-stream Mach numbers from 1.1 to 2.0, semi-apex angles for the wedge from 1.14 degrees to 7.97 degrees, thickness-to-chord ratios for the diamond airfoil from 0.02 to 0.14, chord lengths from 1 to 20 feet, and angles of attack from zero to the inverse tangent of the airfoil thickness-to-chord ratio.

Computer program for simulation of variable recharge with the U. S. Geological Survey modular finite-difference ground-water flow model (MODFLOW)

USGS Publications Warehouse

Kontis, A.L.

2001-01-01

The Variable-Recharge Package is a computerized method designed for use with the U.S. Geological Survey three-dimensional finitedifference ground-water flow model (MODFLOW-88) to simulate areal recharge to an aquifer. It is suitable for simulations of aquifers in which the relation between ground-water levels and land surface can affect the amount and distribution of recharge. The method is based on the premise that recharge to an aquifer cannot occur where the water level is at or above land surface. Consequently, recharge will vary spatially in simulations in which the Variable- Recharge Package is applied, if the water levels are sufficiently high. The input data required by the program for each model cell that can potentially receive recharge includes the average land-surface elevation and a quantity termed ?water available for recharge,? which is equal to precipitation minus evapotranspiration. The Variable-Recharge Package also can be used to simulate recharge to a valley-fill aquifer in which the valley fill and the adjoining uplands are explicitly simulated. Valley-fill aquifers, which are the most common type of aquifer in the glaciated northeastern United States, receive much of their recharge from upland sources as channeled and(or) unchanneled surface runoff and as lateral ground-water flow. Surface runoff in the uplands is generated in the model when the applied water available for recharge is rejected because simulated water levels are at or above land surface. The surface runoff can be distributed to other parts of the model by (1) applying the amount of the surface runoff that flows to upland streams (channeled runoff) to explicitly simulated streams that flow onto the valley floor, and(or) (2) applying the amount that flows downslope toward the valley- fill aquifer (unchanneled runoff) to specified model cells, typically those near the valley wall. An example model of an idealized valley- fill aquifer is presented to demonstrate application of the method and the type of information that can be derived from its use. Documentation of the Variable-Recharge Package is provided in the appendixes and includes listings of model code and of program variables. Comment statements in the program listings provide a narrative of the code. Input-data instructions and printed model output for the package are included.

Stream primary producers relate positively to watershed natural gas measures in north-central Arkansas streams.

PubMed

Austin, Bradley J; Hardgrave, Natalia; Inlander, Ethan; Gallipeau, Cory; Entrekin, Sally; Evans-White, Michelle A

2015-10-01

Construction of unconventional natural gas (UNG) infrastructure (e.g., well pads, pipelines) is an increasingly common anthropogenic stressor that increases potential sediment erosion. Increased sediment inputs into nearby streams may decrease autotrophic processes through burial and scour, or sediment bound nutrients could have a positive effect through alleviating potential nutrient limitations. Ten streams with varying catchment UNG well densities (0-3.6 wells/km(2)) were sampled during winter and spring of 2010 and 2011 to examine relationships between landscape scale disturbances associated with UNG activity and stream periphyton [chlorophyll a (Chl a)] and gross primary production (GPP). Local scale variables including light availability and water column physicochemical variables were measured for each study site. Correlation analyses examined the relationships of autotrophic processes and local scale variables with the landscape scale variables percent pasture land use and UNG metrics (well density and well pad inverse flow path length). Both GPP and Chl a were primarily positively associated with the UNG activity metrics during most sample periods; however, neither landscape variables nor response variables correlated well with local scale factors. These positive correlations do not confirm causation, but they do suggest that it is possible that UNG development can alleviate one or more limiting factors on autotrophic production within these streams. A secondary manipulative study was used to examine the link between nutrient limitation and algal growth across a gradient of streams impacted by natural gas activity. Nitrogen limitation was common among minimally impacted stream reaches and was alleviated in streams with high UNG activity. These data provide evidence that UNG may stimulate the primary production of Fayetteville shale streams via alleviation of N-limitation. Restricting UNG activities from the riparian zone along with better enforcement of best management practices should help reduce these possible impacts of UNG activities on stream autotrophic processes. Copyright © 2015 Elsevier B.V. All rights reserved.

Prioritizing Road Treatments using the Geomorphic Roads Analysis and Inventory Package (GRAIP) to Improve Watershed Conditions in the Wall Creek Watershed, Oregon

NASA Astrophysics Data System (ADS)

Day, K. T.; Black, T.; Clifton, C.; Luce, C.; McCune, S.; Nelson, N.

2010-12-01

Wall Creek, tributary to the North Fork John Day River in eastern Oregon, was identified as a priority watershed by the Umatilla National Forest for restoration in 2002. Most streams in this 518 km2 multi-ownership watershed are designated critical habitat for threatened steelhead. Eight streams are listed on the Oregon 303(d) list for elevated temperatures and excess sedimentation. Over 1000 km of public and private roads in the watershed present a major source of potential water quality and habitat impairment. We conducted a watershed-wide inventory of roads using the Geomorphic Roads Analysis and Inventory Package (GRAIP) in 2009 to quantify sediment contributions from roads to streams. GRAIP is a field and GIS-based model developed by the Forest Service Rocky Mountain Research Station and Utah State University that georeferences and quantifies road hydrologic connectivity, sediment production and delivery, mass wasting, and risk of diversion and plugging at stream crossings. Field survey and modeling produced data for 6,473 drainage locations on 726 km of road (most of the publically owned roads) quantifying the location and mass of sediment produced and delivered to streams. Findings indicate a relatively small subset of roads deliver the majority of road-produced fine sediment; 12 percent of the road length delivers 90 percent of the total fine sediment to streams. Overall fine sediment production in the watershed is relatively low (with an estimated background erosion rate of 518,000 kg/yr for the watershed) and sediment produced and delivered from the road system appears to be a modest addition. Road surfaces produce approximately 81,455 kg of fine sediment per year, with 20,976 kg/year delivered to the stream network. Fifty-nine gullies were observed, 41 of which received road runoff. Sixteen road-related landslides were also observed. The excavated volume of these features totals 3,922,000 kg which is equivalent to 175 years of fine sediment delivery at the current rate. These data are being used by the Umatilla National Forest to prioritize road rehabilitation activities including storm risk reduction and road decommissioning, and to move toward an ecologically and economically sustainable road system. The highest sediment-delivering road segments were evaluated in 2010 to prioritize stabilization and storm damage risk reduction projects. Approximately 30 km of hydrologically connected road segments will be proposed for treatments including closure, decommissioning, and stabilization activities. Once complete, these improvements would result in the reduction of about 7,000 kg/year of fine sediment delivered to the fluvial system from the road network, or a third of the total road contribution to stream sedimentation. Methods and results presented are part of federal land management agency involvement in Total Maximum Daily Load development in the John Day Basin. The project is a collaborative effort with funding and support from the Environmental Protection Agency, Bureau of Land Management, and Oregon Department of Environmental Quality.

The Influence of Plasma Effects of Pair Beams on the Intergalactic Cascade Emission of Blazars

NASA Astrophysics Data System (ADS)

Menzler, Ulf; Schlickeiser, Reinhard

2014-03-01

The attenuation of TeV γ-rays from distant blazars by the extragalactic background light (EBL) produces relativistic electron-positron pair beams. It has been shown by Broderick et. al. (2012) and Schlickeiser et. al (2012) that a pair beam traversing the intergalactic medium is unstable to linear two-stream instabilities of both electrostatic and electromagnetic nature. While for strong blazars all free pair energy is dissipated in heating the intergalactic medium and a potential electromagnetic cascade via inverse-Compton scattering with the cosmic microwave background is suppressed, we investigate the case of weak blazars where the back reaction of generated electrostatic turbulence leads to a plateauing of the electron energy spectrum. In the ultra-relativistic Thomson limit we analytically calculate the inverse-Compton spectral energy distribution for both an unplateaued and a plateaued beam scenario, showing a peak reduction factor of Rpeak ≈ 0.345. This is consistent with the FERMI non-measurements of a GeV excess in the spectrum of EBL attenuated TeV blazars. Claims on the lower bound of the intergalactic magnetic field strengths, made by several authors neglecting plasma effects, are thus put into question.

Reconstruction of the 3-D Dynamics From Surface Variables in a High-Resolution Simulation of North Atlantic

NASA Astrophysics Data System (ADS)

Fresnay, S.; Ponte, A. L.; Le Gentil, S.; Le Sommer, J.

2018-03-01

Several methods that reconstruct the three-dimensional ocean dynamics from sea level are presented and evaluated in the Gulf Stream region with a 1/60° realistic numerical simulation. The use of sea level is motivated by its better correlation with interior pressure or quasi-geostrophic potential vorticity (PV) compared to sea surface temperature and sea surface salinity, and, by its observability via satellite altimetry. The simplest method of reconstruction relies on a linear estimation of pressure at depth from sea level. Another method consists in linearly estimating PV from sea level first and then performing a PV inversion. The last method considered, labeled SQG for surface quasi-geostrophy, relies on a PV inversion but assumes no PV anomalies. The first two methods show comparable skill at levels above -800 m. They moderately outperform SQG which emphasizes the difficulty of estimating interior PV from surface variables. Over the 250-1,000 m depth range, the three methods skillfully reconstruct pressure at wavelengths between 500 and 200 km whereas they exhibit a rapid loss of skill between 200 and 100 km wavelengths. Applicability to a real case scenario and leads for improvements are discussed.

Evaluating radiative transfer schemes treatment of vegetation canopy architecture in land surface models

NASA Astrophysics Data System (ADS)

Braghiere, Renato; Quaife, Tristan; Black, Emily

2016-04-01

Incoming shortwave radiation is the primary source of energy driving the majority of the Earth's climate system. The partitioning of shortwave radiation by vegetation into absorbed, reflected, and transmitted terms is important for most of biogeophysical processes, including leaf temperature changes and photosynthesis, and it is currently calculated by most of land surface schemes (LSS) of climate and/or numerical weather prediction models. The most commonly used radiative transfer scheme in LSS is the two-stream approximation, however it does not explicitly account for vegetation architectural effects on shortwave radiation partitioning. Detailed three-dimensional (3D) canopy radiative transfer schemes have been developed, but they are too computationally expensive to address large-scale related studies over long time periods. Using a straightforward one-dimensional (1D) parameterisation proposed by Pinty et al. (2006), we modified a two-stream radiative transfer scheme by including a simple function of Sun zenith angle, so-called "structure factor", which does not require an explicit description and understanding of the complex phenomena arising from the presence of vegetation heterogeneous architecture, and it guarantees accurate simulations of the radiative balance consistently with 3D representations. In order to evaluate the ability of the proposed parameterisation in accurately represent the radiative balance of more complex 3D schemes, a comparison between the modified two-stream approximation with the "structure factor" parameterisation and state-of-art 3D radiative transfer schemes was conducted, following a set of virtual scenarios described in the RAMI4PILPS experiment. These experiments have been evaluating the radiative balance of several models under perfectly controlled conditions in order to eliminate uncertainties arising from an incomplete or erroneous knowledge of the structural, spectral and illumination related canopy characteristics typical of model comparisons with in-situ observations. The structure factor parameters were obtained for each canopy structure through the inversion against direct and diffuse fraction of absorbed photosynthetically active radiation (fAPAR), and albedo PAR. Overall, the modified two-stream approximation consistently showed a good agreement with the RAMI4PILPS reference values under direct and diffuse illumination conditions. It is an efficient and accurate tool to derive PAR absorptance and reflectance for scenarios with different canopy densities, leaf densities and soil background albedos, with especial attention to brighter backgrounds, i.e., snowy. The major difficulty of its applicability in the real world is to acquire the parameterisation parameters from in-situ observations. The derivation of parameters from Digital Hemispherical Photographs (DHP) is highly promising at forest stands scales. DHP provide a permanent record and are a valuable information source for position, size, density, and distribution of canopy gaps. The modified two-stream approximation parameters were derived from gap probability data extracted from DHP obtained in a woody savannah in California, USA. Values of fAPAR and albedo PAR were evaluated against a tree-based vegetation canopy model, MAESPA, which used airborne LiDAR data to define the individual-tree locations, and extract structural information such as tree height and crown diameter. The parameterisation improved the performance of a two-stream approximation by making it achieves comparable results to complex 3D model calculations under observed conditions.

Relating road salt to exceedances of the water quality standard for chloride in New Hampshire streams.

PubMed

Trowbridge, Philip R; Kahl, J Steve; Sassan, Dari A; Heath, Douglas L; Walsh, Edward M

2010-07-01

Six watersheds in New Hampshire were studied to determine the effects of road salt on stream water quality. Specific conductance in streams was monitored every 15 min for one year using dataloggers. Chloride concentrations were calculated from specific conductance using empirical relationships. Stream chloride concentrations were directly correlated with development in the watersheds and were inversely related to streamflow. Exceedances of the EPA water quality standard for chloride were detected in the four watersheds with the most development. The number of exceedances during a year was linearly related to the annual average concentration of chloride. Exceedances of the water quality standard were not predicted for streams with annual average concentrations less than 102 mg L(-1). Chloride was imported into three of the watersheds at rates ranging from 45 to 98 Mg Cl km(-2) yr(-1). Ninety-one percent of the chloride imported was road salt for deicing roadways and parking lots. A simple, mass balance equation was shown to predict annual average chloride concentrations from streamflow and chloride import rates to the watershed. This equation, combined with the apparent threshold for exceedances of the water quality standard, can be used for screening-level TMDLs for road salt in impaired watersheds.

DOE Office of Scientific and Technical Information (OSTI.GOV)

SADE is a software package for rapidly assembling analytic pipelines to manipulate data. The packages consists of the engine that manages the data and coordinates the movement of data between the tasks performing a function? a set of core libraries consisting of plugins that perform common tasks? and a framework to extend the system supporting the development of new plugins. Currently through configuration files, a pipeline can be defined that maps the routing of data through a series of plugins. Pipelines can be run in a batch mode or can process streaming data? they can be executed from the commandmore » line or run through a Windows background service. There currently exists over a hundred plugins, over fifty pipeline configurations? and the software is now being used by about a half-dozen projects.« less

Upper-tropospheric inversion and easterly jet in the tropics

NASA Astrophysics Data System (ADS)

Fujiwara, M.; Xie, S.-P.; Shiotani, M.; Hashizume, H.; Hasebe, F.; VöMel, H.; Oltmans, S. J.; Watanabe, T.

2003-12-01

Shipboard radiosonde measurements revealed a persistent temperature inversion layer with a thickness of ˜200 m at 12-13 km in a nonconvective region over the tropical eastern Pacific, along 2°N, in September 1999. Simultaneous relative humidity measurements indicated that the thin inversion layer was located at the top of a very wet layer with a thickness of 3-4 km, which was found to originate from the intertropical convergence zone (ITCZ) to the north. Radiative transfer calculations suggested that this upper tropospheric inversion (UTI) was produced and maintained by strong longwave cooling in this wet layer. A strong easterly jet stream was also observed at 12-13 km, centered around 4°-5°N. This easterly jet was in the thermal wind balance, with meridional temperature gradients produced by the cloud and radiative processes in the ITCZ and the wet outflow. Furthermore, the jet, in turn, acted to spread inversions further downstream through the transport of radiatively active water vapor. This feedback mechanism may explain the omnipresence of temperature inversions and layering structures in trace gases in the tropical troposphere. Examination of high-resolution radiosonde data at other sites in the tropical Pacific indicates that similar UTIs often appear around 12-15 km. The UTI around 12-15 km may thus be characterized as one of the "climatological" inversions in the tropical troposphere, forming the lower boundary of the so-called tropical tropopause layer, where the tropospheric air is processed photochemically and microphysically before entering the stratosphere.

Ad Hoc Selection of Voice over Internet Streams

NASA Technical Reports Server (NTRS)

Macha, Mitchell G. (Inventor); Bullock, John T. (Inventor)

2014-01-01

A method and apparatus for a communication system technique involving ad hoc selection of at least two audio streams is provided. Each of the at least two audio streams is a packetized version of an audio source. A data connection exists between a server and a client where a transport protocol actively propagates the at least two audio streams from the server to the client. Furthermore, software instructions executable on the client indicate a presence of the at least two audio streams, allow selection of at least one of the at least two audio streams, and direct the selected at least one of the at least two audio streams for audio playback.

Ad Hoc Selection of Voice over Internet Streams

NASA Technical Reports Server (NTRS)

Macha, Mitchell G. (Inventor); Bullock, John T. (Inventor)

2008-01-01

A method and apparatus for a communication system technique involving ad hoc selection of at least two audio streams is provided. Each of the at least two audio streams is a packetized version of an audio source. A data connection exists between a server and a client where a transport protocol actively propagates the at least two audio streams from the server to the client. Furthermore, software instructions executable on the client indicate a presence of the at least two audio streams, allow selection of at least one of the at least two audio streams, and direct the selected at least one of the at least two audio streams for audio playback.

User’s guide for the Delaware River Basin Streamflow Estimator Tool (DRB-SET)

USGS Publications Warehouse

Stuckey, Marla H.; Ulrich, James E.

2016-06-09

IntroductionThe Delaware River Basin Streamflow Estimator Tool (DRB-SET) is a tool for the simulation of streamflow at a daily time step for an ungaged stream location in the Delaware River Basin. DRB-SET was developed by the U.S. Geological Survey (USGS) and funded through WaterSMART as part of the National Water Census, a USGS research program on national water availability and use that develops new water accounting tools and assesses water availability at the regional and national scales. DRB-SET relates probability exceedances at a gaged location to those at an ungaged stream location. Once the ungaged stream location has been identified by the user, an appropriate streamgage is automatically selected in DRB-SET using streamflow correlation (map correlation method). Alternately, the user can manually select a different streamgage or use the closest streamgage. A report file is generated documenting the reference streamgage and ungaged stream location information, basin characteristics, any warnings, baseline (minimally altered) and altered (affected by regulation, diversion, mining, or other anthropogenic activities) daily mean streamflow, and the mean and median streamflow. The estimated daily flows for the ungaged stream location can be easily exported as a text file that can be used as input into a statistical software package to determine additional streamflow statistics, such as flow duration exceedance or streamflow frequency statistics.

Tracing the spatial and temporal variability of different water sources in a glacierized Alpine catchment (Eastern Italian Alps)

NASA Astrophysics Data System (ADS)

Engel, Michael; Penna, Daniele; Comiti, Francesco; Vignoli, Gianluca; Simoni, Silvia; Dinale, Roberto

2016-04-01

Glacierized catchments are important sources of fresh water. Although recent tracer-based studies have been carried out in these environments, more investigations are needed to understand more in detail the complex dynamics of snowmelt, glacier melt and groundwater contributions to stream water, the spatial and temporal variability of these sources of runoff and suspended sediment. In this study we used stable isotopes of water and electrical conductivity (EC) as tracers to identify the origin of different waters in the glacierized Sulden/Solda catchment (130 km², Eastern Italian Alps). The site ranges in elevation between 1112 and 3905 m a.s.l. and includes two major sub-catchments. Rainfall samples were taken from bulk collectors placed along an elevation gradient (905-2585 m a.s.l.). Winter-integrated snowmelt samples were collected from passive capillary samplers installed at different elevations (1600-2825 m a.s.l.), whereas snowmelt was sampled from dripping snow patches. Glacier melt samples were taken in summer from small rivulets on the glacier surface. Samples from the two main streams were collected monthly in 2014 and 2015 at different stream sections, major tributaries and springs. At the outlet, stream water was sampled daily by an automatic sampler, and EC, turbidity and water stage were measured every 5 minutes. Meteorological data were measured by two weather stations at 1600 and 2825 m a.s.l.. Manual samples were taken from February 2014 to November 2015 while the automatic sampling at the outlet was carried out from May to October 2014 and 2015. Results indicate that precipitation originated from air masses coming from the Atlantic Ocean, with limited influence of Mediterrean air masses. Snowmelt showed a pronounced isotopic enrichment during summer, which was also found for glacier melt, but less strong. Spring water from both sub-catchments seemed to be affected by infiltrating snowmelt during summer and represented the major stream component during winter baseflow. The tracer-based comparison of stream locations in both sub-catchments showed similar isotopic and EC dynamics during summer, highlighting that meltwater dynamics may hide the hydrochemical impact of different geology in both sub-catchments. However, EC dynamics in the left sub-catchment during winter indicated a spatial gradient of increasing solute concentrations along the stream. In contrast, an inverse spatial gradient of solute concentrations was found in the right sub-catchment, revealing a different geological setting and highlighting the impact of intensive subglacial weathering. At the outlet, EC and isotopic composition could identify clear seasonal melt water dynamics with periods of pronounced snowmelt contributions in early summer followed by dominant glacier melt contributions. Rainfall events seemed to play a major role on stream water composition in autumn. Also the impact of early snowfall and its melting in autumn 2015 could be traced and well distinguished from early summer snowmelt water. Turbidity showed strong oscillations at the daily scale during summer melt periods and markedly responded to rainfall events, which could be attributed to rapid mobilization of fine sediments and suspended sediment transport in the study catchment.

Groundwater flow and solute transport modelling from within R: Development of the RMODFLOW and RMT3DMS packages.

NASA Astrophysics Data System (ADS)

Rogiers, Bart

2015-04-01

Since a few years, an increasing number of contributed R packages is becoming available, in the field of hydrology. Hydrological time series analysis packages, lumped conceptual rainfall-runoff models, distributed hydrological models, weather generators, and different calibration and uncertainty estimation methods are all available. Also a few packages are available for solving partial differential equations. Subsurface hydrological modelling is however still seldomly performed in R, or with codes interfaced with R, despite the fact that excellent geostatistical packages, model calibration/inversion options and state-of-the-art visualization libraries are available. Moreover, other popular scientific programming languages like matlab and python have packages for pre- and post-processing files of MODFLOW (Harbaugh 2005) and MT3DMS (Zheng 2010) models. To fill this gap, we present here the development versions of the RMODFLOW and RMT3DMS packages, which allow pre- and post-processing MODFLOW and MT3DMS input and output files from within R. File reading and writing functions are currently available for different packages, and plotting functions are foreseen making use of the ggplot2 package (plotting system based on the grammar of graphics; Wickham 2009). The S3 generic-function object oriented programming style is used for this. An example is provided, making modifications to an existing model, and visualization of the model output. References Harbaugh, A. (2005). MODFLOW-2005: The US Geological Survey Modular Ground-water Model--the Ground-water Flow Process, U.S. Geological Survey Techniques and Methods 6-A16 (p. 253). Wickham, H. (2009). ggplot2: elegant graphics for data analysis. Springer New York, 2009. Zheng, C. (2010). MT3DMS v5.3, a modular three-dimensional multispecies transport model for simulation of advection, dispersion and chemical reactions of contaminants in groundwater systems. Supplemental User's Guide. (p. 56).

Dynamical Competition of IC-Industry Clustering from Taiwan to China

NASA Astrophysics Data System (ADS)

Tsai, Bi-Huei; Tsai, Kuo-Hui

2009-08-01

Most studies employ qualitative approach to explore the industrial clusters; however, few research has objectively quantified the evolutions of industry clustering. The purpose of this paper is to quantitatively analyze clustering among IC design, IC manufacturing as well as IC packaging and testing industries by using the foreign direct investment (FDI) data. The Lotka-Volterra system equations are first adopted here to capture the competition or cooperation among such three industries, thus explaining their clustering inclinations. The results indicate that the evolution of FDI into China for IC design industry significantly inspire the subsequent FDI of IC manufacturing as well as IC packaging and testing industries. Since IC design industry lie in the upstream stage of IC production, the middle-stream IC manufacturing and downstream IC packing and testing enterprises tend to cluster together with IC design firms, in order to sustain a steady business. Finally, Taiwan IC industry's FDI amount into China is predicted to cumulatively increase, which supports the industrial clustering tendency for Taiwan IC industry. Particularly, the FDI prediction of Lotka-Volterra model performs superior to that of the conventional Bass model after the forecast accuracy of these two models are compared. The prediction ability is dramatically improved as the industrial mutualism among each IC production stage is taken into account.

Variety and complexity in the mound of sedimentary rock in Gale Crater, Mars

NASA Astrophysics Data System (ADS)

Edgett, K. S.; Malin, M. C.

2011-12-01

NASA's Mars Science Laboratory rover, Curiosity, will be used to explore a portion of the lower stratigraphic record of the northwest side of a mound of layered rock ˜5 km thick in the 155 km-diameter Gale Crater. The rock materials are of a sedimentary origin, though the proportions of clastic sediment, tephra, and chemical precipitates are presently unknown. The mound is usually described as having lower and upper units separated by an erosional unconformity. However, some investigators recognize that it is considerably more complex. The stratigraphy displays vertical and lateral complexity; multiple erosional unconformities; filled, buried, interbedded, and exhumed or partly exhumed impact craters; evidence for deposition along the base of the mound followed by retreat of less-resistant rocks and abandonment of erosion-resistant materials shed from the mound; lithified sediments deposited at the mouths of streams that cut mound rock; inversion of intra-canyon stream channel sediment; and widening of canyons. On the northeast side of the mound there are landslide deposits, shed from the mound, that contain large blocks (10s to 100s of m) of layered rock in various orientations. The mound's highest feature does not exhibit layering and has been interpreted by some as being Gale's impact-generated central peak. However, its highest elevation exceeds that of most of the crater rim, an observation inconsistent with central peaks (where they occur at all) in martian craters of diameters similar to Gale. The layered materials that occur highest in the mound are also at elevations that exceed most of the crater rim; these exhibit repeated stratal packages that drape previously-eroded mound topography; they produce boulders as they erode, attesting to their lithified nature and requiring that a lithification process occurred in materials located ≥ 5 km above the deepest part of Gale. The lower mound strata, including the Curiosity field site, are diverse materials; they include strata of differing thickness, erosional expression, and tone. Resistant rocks form cliffs that shed boulders, less resistant rocks form shallow slopes. One relatively thin, dark unit, interpreted to be a marker bed that outcrops at various places across the lower mound (doi:10.1029/2009GL041870), is more resistant to erosion than sub- and superjacent beds and retains many small impact craters. Some of the lower mound rocks are cross-cut by channel or cavern fills; others are cut by reticulated patterns of filled cracks or ridges formed by inversion of these cracks. These reticulated features might be evidence of interaction between the lower mound rocks and groundwater; we anticipate the Curiosity team will find abundant evidence for dissolution and precipitation of minerals in these rock outcrops.

The Mississippi Embayment Regional Aquifer Study (MERAS): Documentation of a Groundwater-Flow Model Constructed to Assess Water Availability in the Mississippi Embayment

USGS Publications Warehouse

Clark, Brian R.; Hart, Rheannon M.

2009-01-01

The Mississippi Embayment Regional Aquifer Study (MERAS) was conducted with support from the Groundwater Resources Program of the U.S. Geological Survey Office of Groundwater. This report documents the construction and calibration of a finite-difference groundwater model for use as a tool to quantify groundwater availability within the Mississippi embayment. To approximate the differential equation, the MERAS model was constructed with the U.S. Geological Survey's modular three-dimensional finite-difference code, MODFLOW-2005; the preconditioned conjugate gradient solver within MODFLOW-2005 was used for the numerical solution technique. The model area boundary is approximately 78,000 square miles and includes eight States with approximately 6,900 miles of simulated streams, 70,000 well locations, and 10 primary hydrogeologic units. The finite-difference grid consists of 414 rows, 397 columns, and 13 layers. Each model cell is 1 square mile with varying thickness by cell and by layer. The simulation period extends from January 1, 1870, to April 1, 2007, for a total of 137 years and 69 stress periods. The first stress period is simulated as steady state to represent predevelopment conditions. Areal recharge is applied throughout the MERAS model area using the MODFLOW-2005 Recharge Package. Irrigation, municipal, and industrial wells are simulated using the Multi-Node Well Package. There are 43 streams simulated by the MERAS model. Each stream or river in the model area was simulated using the Streamflow-Routing Package. The perimeter of the model area and the base of the flow system are represented as no-flow boundaries. The downgradient limit of each model layer is a no-flow boundary, which approximates the extent of water with less than 10,000 milligrams per liter of dissolved solids. The MERAS model was calibrated by making manual changes to parameter values and examining residuals for hydraulic heads and streamflow. Additional calibration was achieved through alternate use of UCODE-2005 and PEST. Simulated heads were compared to 55,786 hydraulic-head measurements from 3,245 wells in the MERAS model area. Values of root mean square error between simulated and observed hydraulic heads of all observations ranged from 8.33 feet in 1919 to 47.65 feet in 1951, though only six root mean square error values are greater than 40 feet for the entire simulation period. Simulated streamflow generally is lower than measured streamflow for streams with streamflow less than 1,000 cubic feet per second, and greater than measured streamflow for streams with streamflow more than 1,000 cubic feet per second. Simulated streamflow is underpredicted for 18 observations and overpredicted for 10 observations in the model. These differences in streamflow illustrate the large uncertainty in model inputs such as predevelopment recharge, overland flow, pumpage (from stream and aquifer), precipitation, and observation weights. The groundwater-flow budget indicates changes in flow into (inflows) and out of (outflows) the model area during the pregroundwater-irrigation period (pre-1870) to 2007. Total flow (sum of inflows or outflows) through the model ranged from about 600 million gallons per day prior to development to 18,197 million gallons per day near the end of the simulation. The pumpage from wells represents the largest outflow components with a net rate of 18,197 million gallons per day near the end of the model simulation in 2006. Groundwater outflows are offset primarily by inflow from aquifer storage and recharge.

Secondary Waste Form Down-Selection Data Package—Fluidized Bed Steam Reforming Waste Form

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qafoku, Nikolla; Westsik, Joseph H.; Strachan, Denis M.

2011-09-12

The Hanford Site in southeast Washington State has 56 million gallons of radioactive and chemically hazardous wastes stored in 177 underground tanks (ORP 2010). The U.S. Department of Energy (DOE), Office of River Protection (ORP), through its contractors, is constructing the Hanford Tank Waste Treatment and Immobilization Plant (WTP) to convert the radioactive and hazardous wastes into stable glass waste forms for disposal. Within the WTP, the pretreatment facility will receive the retrieved waste from the tank farms and separate it into two treated process streams. These waste streams will be vitrified, and the resulting waste canisters will be sentmore » to offsite (high-level waste [HLW]) and onsite (immobilized low-activity waste [ILAW]) repositories. As part of the pretreatment and ILAW processing, liquid secondary wastes will be generated that will be transferred to the Effluent Treatment Facility (ETF) on the Hanford Site for further treatment. These liquid secondary wastes will be converted to stable solid waste forms that will be disposed of in the Integrated Disposal Facility (IDF). To support the selection of a waste form for the liquid secondary wastes from WTP, Washington River Protection Solutions (WRPS) has initiated secondary waste form testing work at Pacific Northwest National Laboratory (PNNL). In anticipation of a down-selection process for a waste form for the Solidification Treatment Unit to be added to the ETF, PNNL is developing data packages to support that down-selection. The objective of the data packages is to identify, evaluate, and summarize the existing information on the four waste forms being considered for stabilizing and solidifying the liquid secondary wastes. At the Hanford Site, the FBSR process is being evaluated as a supplemental technology for treating and immobilizing Hanford LAW radioactive tank waste and for treating secondary wastes from the WTP pretreatment and LAW vitrification processes.« less

Numerical simulation of two-dimensional flow over a heated carbon surface with coupled heterogeneous and homogeneous reactions

NASA Astrophysics Data System (ADS)

Johnson, Ryan Federick; Chelliah, Harsha Kumar

2017-01-01

For a range of flow and chemical timescales, numerical simulations of two-dimensional laminar flow over a reacting carbon surface were performed to understand further the complex coupling between heterogeneous and homogeneous reactions. An open-source computational package (OpenFOAM®) was used with previously developed lumped heterogeneous reaction models for carbon surfaces and a detailed homogeneous reaction model for CO oxidation. The influence of finite-rate chemical kinetics was explored by varying the surface temperatures from 1800 to 2600 K, while flow residence time effects were explored by varying the free-stream velocity up to 50 m/s. The reacting boundary layer structure dependence on the residence time was analysed by extracting the ratio of chemical source and species diffusion terms. The important contributions of radical species reactions on overall carbon removal rate, which is often neglected in multi-dimensional simulations, are highlighted. The results provide a framework for future development and validation of lumped heterogeneous reaction models based on multi-dimensional reacting flow configurations.

Inverse Flush Air Data System (FADS) for Real Time Simulations

NASA Astrophysics Data System (ADS)

Madhavanpillai, Jayakumar; Dhoaya, Jayanta; Balakrishnan, Vidya Saraswathi; Narayanan, Remesh; Chacko, Finitha Kallely; Narayanan, Shyam Mohan

2017-12-01

Flush Air Data Sensing System (FADS) forms a mission critical sub system in future reentry vehicles. FADS makes use of surface pressure measurements from the nose cap of the vehicle for deriving the air data parameters of the vehicle such as angle of attack, angle of sideslip, Mach number, etc. These parameters find use in the flight control and guidance systems, and also assist in the overall mission management. The FADS under consideration in this paper makes use of nine pressure ports located in the nose cap of a technology demonstrator vehicle. In flight, the air data parameters are obtained from the FADS estimation algorithm using the pressure data at the nine pressure ports. But, these pressure data will not be available, for testing the FADS package during ground simulation. So, an inverse software to FADS which estimates the pressure data at the pressure ports for a given flight condition is developed. These pressure data at the nine ports will go as input to the FADS package during ground simulation. The software is run to generate the pressure data for the descent phase trajectory of the technology demonstrator. This data is used again to generate the air data parameters from FADS algorithm. The computed results from FADS algorithm match well with the trajectory data.

Singularity and Nonnormality in the Classification of Compositional Data

USGS Publications Warehouse

Bohling, Geoffrey C.; Davis, J.C.; Olea, R.A.; Harff, Jan

1998-01-01

Geologists may want to classify compositional data and express the classification as a map. Regionalized classification is a tool that can be used for this purpose, but it incorporates discriminant analysis, which requires the computation and inversion of a covariance matrix. Covariance matrices of compositional data always will be singular (noninvertible) because of the unit-sum constraint. Fortunately, discriminant analyses can be calculated using a pseudo-inverse of the singular covariance matrix; this is done automatically by some statistical packages such as SAS. Granulometric data from the Darss Sill region of the Baltic Sea is used to explore how the pseudo-inversion procedure influences discriminant analysis results, comparing the algorithm used by SAS to the more conventional Moore-Penrose algorithm. Logratio transforms have been recommended to overcome problems associated with analysis of compositional data, including singularity. A regionalized classification of the Darss Sill data after logratio transformation is different only slightly from one based on raw granulometric data, suggesting that closure problems do not influence severely regionalized classification of compositional data.

Bayesian ISOLA: new tool for automated centroid moment tensor inversion

NASA Astrophysics Data System (ADS)

Vackář, Jiří; Burjánek, Jan; Gallovič, František; Zahradník, Jiří; Clinton, John

2017-08-01

We have developed a new, fully automated tool for the centroid moment tensor (CMT) inversion in a Bayesian framework. It includes automated data retrieval, data selection where station components with various instrumental disturbances are rejected and full-waveform inversion in a space-time grid around a provided hypocentre. A data covariance matrix calculated from pre-event noise yields an automated weighting of the station recordings according to their noise levels and also serves as an automated frequency filter suppressing noisy frequency ranges. The method is tested on synthetic and observed data. It is applied on a data set from the Swiss seismic network and the results are compared with the existing high-quality MT catalogue. The software package programmed in Python is designed to be as versatile as possible in order to be applicable in various networks ranging from local to regional. The method can be applied either to the everyday network data flow, or to process large pre-existing earthquake catalogues and data sets.

ActiveSeismoPick3D - automatic first arrival determination for large active seismic arrays

NASA Astrophysics Data System (ADS)

Paffrath, Marcel; Küperkoch, Ludger; Wehling-Benatelli, Sebastian; Friederich, Wolfgang

2016-04-01

We developed a tool for automatic determination of first arrivals in active seismic data based on an approach, that utilises higher order statistics (HOS) and the Akaike information criterion (AIC), commonly used in seismology, but not in active seismics. Automatic picking is highly desirable in active seismics as the number of data provided by large seismic arrays rapidly exceeds of what an analyst can evaluate in a reasonable amount of time. To bring the functionality of automatic phase picking into the context of active data, the software package ActiveSeismoPick3D was developed in Python. It uses a modified algorithm for the determination of first arrivals which searches for the HOS maximum in unfiltered data. Additionally, it offers tools for manual quality control and postprocessing, e.g. various visualisation and repicking functionalities. For flexibility, the tool also includes methods for the preparation of geometry information of large seismic arrays and improved interfaces to the Fast Marching Tomography Package (FMTOMO), which can be used for the prediction of travel times and inversion for subsurface properties. Output files are generated in the VTK format, allowing the 3D visualization of e.g. the inversion results. As a test case, a data set consisting of 9216 traces from 64 shots was gathered, recorded at 144 receivers deployed in a regular 2D array of a size of 100 x 100 m. ActiveSeismoPick3D automatically checks the determined first arrivals by a dynamic signal to noise ratio threshold. From the data a 3D model of the subsurface was generated using the export functionality of the package and FMTOMO.

Upgrade to MODFLOW-GUI; addition of MODPATH, ZONEBDGT, and additional MODFLOW packages to the U.S. Geological Survey MODFLOW-96 Graphical-User Interface

USGS Publications Warehouse

Winston, R.B.

1999-01-01

This report describes enhancements to a Graphical-User Interface (GUI) for MODFLOW-96, the U.S. Geological Survey (USGS) modular, three-dimensional, finitedifference ground-water flow model, and MOC3D, the USGS three-dimensional, method-ofcharacteristics solute-transport model. The GUI is a plug-in extension (PIE) for the commercial program Argus ONEe. The GUI has been modified to support MODPATH (a particle tracking post-processing package for MODFLOW), ZONEBDGT (a computer program for calculating subregional water budgets), and the Stream, Horizontal-Flow Barrier, and Flow and Head Boundary packages in MODFLOW. Context-sensitive help has been added to make the GUI easier to use and to understand. In large part, the help consists of quotations from the relevant sections of this report and its predecessors. The revised interface includes automatic creation of geospatial information layers required for the added programs and packages, and menus and dialog boxes for input of parameters for simulation control. The GUI creates formatted ASCII files that can be read by MODFLOW-96, MOC3D, MODPATH, and ZONEBDGT. All four programs can be executed within the Argus ONEe application (Argus Interware, Inc., 1997). Spatial results of MODFLOW-96, MOC3D, and MODPATH can be visualized within Argus ONEe. Results from ZONEBDGT can be visualized in an independent program that can also be used to view budget data from MODFLOW, MOC3D, and SUTRA. Another independent program extracts hydrographs of head or drawdown at individual cells from formatted MODFLOW head and drawdown files. A web-based tutorial on the use of MODFLOW with Argus ONE has also been updated. The internal structure of the GUI has been modified to make it possible for advanced users to easily customize the GUI. Two additional, independent PIE?s were developed to allow users to edit the positions of nodes and to facilitate exporting the grid geometry to external programs.

Radiative transfer through terrestrial atmosphere and ocean: Software package SCIATRAN

NASA Astrophysics Data System (ADS)

Rozanov, V. V.; Rozanov, A. V.; Kokhanovsky, A. A.; Burrows, J. P.

2014-01-01

SCIATRAN is a comprehensive software package for the modeling of radiative transfer processes in the terrestrial atmosphere and ocean in the spectral range from the ultraviolet to the thermal infrared (0.18 - 40 μm) including multiple scattering processes, polarization, thermal emission and ocean-atmosphere coupling. The software is capable of modeling spectral and angular distributions of the intensity or the Stokes vector of the transmitted, scattered, reflected, and emitted radiation assuming either a plane-parallel or a spherical atmosphere. Simulations are done either in the scalar or in the vector mode (i.e. accounting for the polarization) for observations by space-, air-, ship- and balloon-borne, ground-based, and underwater instruments in various viewing geometries (nadir, off-nadir, limb, occultation, zenith-sky, off-axis). All significant radiative transfer processes are accounted for. These are, e.g. the Rayleigh scattering, scattering by aerosol and cloud particles, absorption by gaseous components, and bidirectional reflection by an underlying surface including Fresnel reflection from a flat or roughened ocean surface. The software package contains several radiative transfer solvers including finite difference and discrete-ordinate techniques, an extensive database, and a specific module for solving inverse problems. In contrast to many other radiative transfer codes, SCIATRAN incorporates an efficient approach to calculate the so-called Jacobians, i.e. derivatives of the intensity with respect to various atmospheric and surface parameters. In this paper we discuss numerical methods used in SCIATRAN to solve the scalar and vector radiative transfer equation, describe databases of atmospheric, oceanic, and surface parameters incorporated in SCIATRAN, and demonstrate how to solve some selected radiative transfer problems using the SCIATRAN package. During the last decades, a lot of studies have been published demonstrating that SCIATRAN is a valuable tool for a wide range of remote sensing applications. Here, we present some selected comparisons of SCIATRAN simulations to published benchmark results, independent radiative transfer models, and various measurements from satellite, ground-based, and ship instruments. Methods for solving inverse problems related to remote sensing of the Earth's atmosphere using the SCIATRAN software are outside the scope of this study and will be discussed in a follow-up paper. The SCIATRAN software package along with a detailed User's Guide is freely available for non-commercial use via the webpage of the Institute of Environmental Physics (IUP), University of Bremen: http://www.iup.physik.uni-bremen.de/sciatran.

Coupled oxygen-carbon dioxide modelling to partition potential external contribution to stream carbon dioxide concentrations.

NASA Astrophysics Data System (ADS)

Butman, D. E.; Holtgrieve, G. W.

2017-12-01

Recent modelling studies in large catchments have estimated that in excess of 74% of the dissolved carbon dioxide found in first and second order streams originate from allochthonous sources. Stable isotopes of carbon-13 in carbon dioxide have been used to identify ground water seeps in stream systems, where decreases in δ13CO2 occur along gaining stream reaches, suggesting that carbon dioxide in ground water is more depleted than what is found in surface water due to fractionation of CO2 during emissions across the air water interface. Although isotopes represent a chemical tracer in stream systems for potential groundwater contribution, the temporal resolution of discrete samples make partitioning allochthonous versus autochthonous sources of CO2 difficult on hydrologically relevant time scales. Here we show results of field deployments of high frequent dissolved CO2, O2, PAR, Temperature and pH from the Thornton Creek Watershed, the largest urban watershed in Seattle, WA. We present an exploration into using high resolution time series of dissolved oxygen and carbon dioxide in a dual gas approach to separate the contribution of in stream respiration from external sources. We extend upon previous efforts to model stream metabolism across diel cycles by incorporating simultaneous direct measurements of dissolved oxygen, PCO2, and pH within an inverse modeling framework and Bayesian parameter estimation. With an initial assumption of a stoichiometric ratio of 1:1 for O2 and CO2 for autochthonous driven metabolism, we investigate positive or negative departures from this ratio as an indicator of external CO2 to the stream (terrestrial or atmospheric) and factors contributing to this flux.

Invertebrate and fish assemblage relations to dissolved Oxygen minima in lowland streams of southwestern Louisiana

USGS Publications Warehouse

Justus, B.G.; Mize, Scott V.; Kroes, Daniel; Wallace, James E.

2012-01-01

Dissolved oxygen (DO) concentrations in lowland streams are naturally lower than those in upland streams; however, in some regions where monitoring data are lacking, DO criteria originally established for upland streams have been applied to lowland streams. This study investigated the DO concentrations at which fish and invertebrate assemblages at 35 sites located on lowland streams in southwestern Louisiana began to demonstrate biological thresholds.Average threshold values for taxa richness, diversity and abundance metrics were 2.6 and 2.3 mg/L for the invertebrate and fish assemblages, respectively. These thresholds are approximately twice the DO concentration that some native fish species are capable of tolerating and are comparable with DO criteria that have been recently applied to some coastal streams in Louisiana and Texas. DO minima >2.5 mg/L were favoured for all but extremely tolerant taxa. Extremely tolerant taxa had respiratory adaptations that gave them a competitive advantage, and their success when DO minima were <2 mg/L could be related more to reductions in competition or predation than to DO concentration directly.DO generally had an inverse relation to the amount of agriculture in the buffer area; however, DO concentrations at sites with both low and high amounts of agriculture (including three least-disturbed sites) declined to <2.5 mg/L. Thus, although DO fell below a concentration that was identified as an approximate biological threshold, sources of this condition were sometimes natural (allochthonous material) and had little relation to anthropogenic activity.

New insights into the inversion history of the West Natuna Basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ginger, D.C.; Pothecary, J.; Hedley, R.J.

1994-07-01

Late Eocene to mid-Oligocene transtensional rifting created a complex network of graben in the West Natuna and Malay basins. From the earliest Miocene, the grabens were inverted to form folds and wrench zones as a result of a right-lateral stress regime. The nature of the inversion is strongly controlled by the orientation of underlying rift faults with respect to the principal stress, [sigma][sub 1]. Rift basins with a strike oriented at a high angle to the principal stress form folds through reactivation of graben-bounding faults. In these rifts the synrift graben fill is inverted over the graben footwall, often alongmore » a fault with a convex upward geometry. The magnitude of inversion is closely correlated to the heave of the initial extensional faults; large extensional faults often have large inversion folds associated with them and vice versa. Within any one graben, inversion appears to commence at younger ages away from these large faults. The mechanisms of inversion fold development have been investigated using detailed interpretations of modern seismic data and a section balancing and restoration computer software package. Results of this work are presented in support of the conclusions documented in this paper. The original grabens were formed through extension of basement equivalent to [beta] = 1.05 to 1.30. In most grabens, at least some of the extension was removed by the subsequent inversion. Amounts of shortening range from 2 to 18%, equivalent to removal of between 40 and 100% of the original graben extension.« less

Integration of Electrical Resistivity and Seismic Refraction using Combine Inversion for Detecting Material Deposits of Impact Crater at Bukit Bunuh, Lenggong, Perak

NASA Astrophysics Data System (ADS)

Yusoh, R.; Saad, R.; Saidin, M.; Muhammad, S. B.; Anda, S. T.

2018-04-01

Both electrical resistivity and seismic refraction profiling has become a common method in pre-investigations for visualizing subsurface structure. The encouragement to use these methods is that combined of both methods can decrease the obscure inherent to the distinctive use of these methods. Both method have their individual software packages for data inversion, but potential to combine certain geophysical methods are restricted; however, the research algorithms that have this functionality was exists and are evaluated personally. The interpretation of subsurface were improve by combining inversion data from both method by influence each other models using closure coupling; thus, by implementing both methods to support each other which could improve the subsurface interpretation. These methods were applied on a field dataset from a pre-investigation for archeology in finding the material deposits of impact crater. There were no major changes in the inverted model by combining data inversion for this archetype which probably due to complex geology. The combine data analysis shows the deposit material start from ground surface to 20 meter depth which the class separation clearly separate the deposit material.

Approaches in highly parameterized inversion: bgaPEST, a Bayesian geostatistical approach implementation with PEST: documentation and instructions

USGS Publications Warehouse

Fienen, Michael N.; D'Oria, Marco; Doherty, John E.; Hunt, Randall J.

2013-01-01

The application bgaPEST is a highly parameterized inversion software package implementing the Bayesian Geostatistical Approach in a framework compatible with the parameter estimation suite PEST. Highly parameterized inversion refers to cases in which parameters are distributed in space or time and are correlated with one another. The Bayesian aspect of bgaPEST is related to Bayesian probability theory in which prior information about parameters is formally revised on the basis of the calibration dataset used for the inversion. Conceptually, this approach formalizes the conditionality of estimated parameters on the specific data and model available. The geostatistical component of the method refers to the way in which prior information about the parameters is used. A geostatistical autocorrelation function is used to enforce structure on the parameters to avoid overfitting and unrealistic results. Bayesian Geostatistical Approach is designed to provide the smoothest solution that is consistent with the data. Optionally, users can specify a level of fit or estimate a balance between fit and model complexity informed by the data. Groundwater and surface-water applications are used as examples in this text, but the possible uses of bgaPEST extend to any distributed parameter applications.

Parallel interconnect for a novel system approach to short distance high information transfer data links

NASA Astrophysics Data System (ADS)

Raskin, Glenn; Lebby, Michael S.; Carney, F.; Kazakia, M.; Schwartz, Daniel B.; Gaw, Craig A.

1997-04-01

The OPTOBUSTM family of products provides for high performance parallel interconnection utilizing optical links in a 10-bit wide bi-directional configuration. The link is architected to be 'transparent' in that it is totally asynchronous and dc coupled so that it can be treated as a perfect cable with extremely low skew and no losses. An optical link consists of two identical transceiver modules and a pair of connectorized 62.5 micrometer multi mode fiber ribbon cables. The OPTOBUSTM I link provides bi- directional functionality at 4 Gbps (400 Mbps per channel), while the OPTOBUSTM II link will offer the same capability at 8 Gbps (800 Mbps per channel). The transparent structure of the OPTOBUSTM links allow for an arbitrary data stream regardless of its structure. Both the OPTOBUSTM I and OPTOBUSTM II transceiver modules are packaged as partially populated 14 by 14 pin grid arrays (PGA) with optical receptacles on one side of the module. The modules themselves are composed of several elements; including passives, integrated circuits optoelectronic devices and optical interface units (OIUs) (which consist of polymer waveguides and a specially designed lead frame). The initial offering of the modules electrical interface utilizes differential CML. The CML line driver sinks 5 mA of current into one of two pins. When terminated with 50 ohm pull-up resistors tied to a voltage between VCC and VCC-2, the result is a differential swing of plus or minus 250 mV, capable of driving standard PECL I/Os. Future offerings of the OPTOBUSTM links will incorporate LVDS and PECL interfaces as well as CML. The integrated circuits are silicon based. For OPTOBUSTM I links, a 1.5 micrometer drawn emitter NPN bipolar process is used for the receiver and an enhanced 0.8 micrometer CMOS process for the laser driver. For OPTOBUSTM II links, a 0.8 micrometer drawn emitter NPN bipolar process is used for the receiver and the driver IC utilizes 0.8 micrometer BiCMOS technology. The OPTOBUSTM architecture uses AlGaAs vertical cavity surface emitting lasers (VCSELs) at 850 nm in conjunction with unique opto-electronic packaging concepts. Most laser based transmitter subsystems are incapable of carrying an arbitrary NRZ data stream at high data rates. The receiver subsystem utilizes a conventional GaAs PIN photo-detector. In parallel interconnect systems. The design must take into account the simultaneous switching noise from the neighboring systems. If not well controlled, the high density of the multiple interconnects can limit the sensitivity and therefore the performance of the system. The packaging approach of the VCSEL and PIN arrays allow for high bandwidths and provide the coupling mechanisms necessary to interface to the 62.5 micrometer multi mode fiber. To allow for extremely high electrical signals the OPTOBUSTM package utilizes a multilayer tape automated bonded (TAB) lead frame. The lead frame contains separate signal and ground layers. The ground layer successfully provides for a pseudo-coaxial environment (low inductance and effective signal coupling to the ground plane).

A generic multibody simulation

NASA Technical Reports Server (NTRS)

Hopping, K. A.; Kohn, W.

1986-01-01

Described is a dynamic simulation package which can be configured for orbital test scenarios involving multiple bodies. The rotational and translational state integration methods are selectable for each individual body and may be changed during a run if necessary. Characteristics of the bodies are determined by assigning components consisting of mass properties, forces, and moments, which are the outputs of user-defined environmental models. Generic model implementation is facilitated by a transformation processor which performs coordinate frame inversions. Transformations are defined in the initialization file as part of the simulation configuration. The simulation package includes an initialization processor, which consists of a command line preprocessor, a general purpose grammar, and a syntax scanner. These permit specifications of the bodies, their interrelationships, and their initial states in a format that is not dependent on a particular test scenario.

D-GENIES: dot plot large genomes in an interactive, efficient and simple way.

PubMed

Cabanettes, Floréal; Klopp, Christophe

2018-01-01

Dot plots are widely used to quickly compare sequence sets. They provide a synthetic similarity overview, highlighting repetitions, breaks and inversions. Different tools have been developed to easily generated genomic alignment dot plots, but they are often limited in the input sequence size. D-GENIES is a standalone and web application performing large genome alignments using minimap2 software package and generating interactive dot plots. It enables users to sort query sequences along the reference, zoom in the plot and download several image, alignment or sequence files. D-GENIES is an easy-to-install, open-source software package (GPL) developed in Python and JavaScript. The source code is available at https://github.com/genotoul-bioinfo/dgenies and it can be tested at http://dgenies.toulouse.inra.fr/.

High-speed landslide mechanism extracted from long-period surface waves

NASA Astrophysics Data System (ADS)

Zhao, Juan

2016-04-01

Long-period seismic signals gathered at stations far from landslide area can be used to recover the landslide source force applied on ground during the rapid sliding process. This force history is helpful to improve our ability to deduce the characteristics of the event as well as the dynamic properties of bulk motion. We use source mechanism inversion to analyse two different large landslides. Seismic waves generated by these two events have been recorded respectively by more than 5 stations, with the distance range from 69km to 1325km. The first event is the sudden failure happened at Qianjiangping village (30.97°N, 110.61°E) on 13 July 2003, on the bank of the Qinggan river. The landslide flow brought about 20 million cubic meters rock and soil masses right into the river in a short time. It moved about 250 meters in the main sliding direction of S45°E before stopped by the opposite bank. It is a typical reservoir landslide, which has been compared to the 1963 Vaiont landslide in Italy. The other event is the Xiaolin (120.64°E; 23.16°N) deep-seated landslide, located in southwestern Taiwan and had volume of about 27 million cubic meters. The landslide moved in the westward direction, divided into two streams at about the middle of the run-out, because there had been a small ridge and two valleys extended from the west side of the ridge. The deposit spreading length of this landslide is about 2300 meters. We discuss the different characteristics of the two events in both geological structure and movement mode based on the field survey. Then we show that those differences are also revealed by the source force-time functions from inversion.

Analytical Models of Exoplanetary Atmospheres. IV. Improved Two-stream Radiative Transfer for the Treatment of Aerosols

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heng, Kevin; Kitzmann, Daniel, E-mail: kevin.heng@csh.unibe.ch, E-mail: daniel.kitzmann@csh.unibe.ch

We present a novel generalization of the two-stream method of radiative transfer, which allows for the accurate treatment of radiative transfer in the presence of strong infrared scattering by aerosols. We prove that this generalization involves only a simple modification of the coupling coefficients and transmission functions in the hemispheric two-stream method. This modification originates from allowing the ratio of the first Eddington coefficients to depart from unity. At the heart of the method is the fact that this ratio may be computed once and for all over the entire range of values of the single-scattering albedo and scattering asymmetrymore » factor. We benchmark our improved two-stream method by calculating the fraction of flux reflected by a single atmospheric layer (the reflectivity) and comparing these calculations to those performed using a 32-stream discrete-ordinates method. We further compare our improved two-stream method to the two-stream source function (16 streams) and delta-Eddington methods, demonstrating that it is often more accurate at the order-of-magnitude level. Finally, we illustrate its accuracy using a toy model of the early Martian atmosphere hosting a cloud layer composed of carbon dioxide ice particles. The simplicity of implementation and accuracy of our improved two-stream method renders it suitable for implementation in three-dimensional general circulation models. In other words, our improved two-stream method has the ease of implementation of a standard two-stream method, but the accuracy of a 32-stream method.« less

Floral ecology and insect visitation in riparian Tamarix sp. (saltcedar)

USGS Publications Warehouse

Andersen, D.C.; Nelson, S.M.

2013-01-01

Climate change projections for semiarid and arid North America include reductions in stream discharge that could adversely affect riparian plant species dependent on stream-derived ground water. In order to better understand this potential impact, we used a space-for-time substitution to test the hypotheses that increasing depth-to-groundwater (DGW) is inversely related to Tamarix sp. (saltcedar) flower abundance (F) and nectar production per flower (N). We also assessed whether DGW affected the richness or abundance of insects visiting flowers. We examined Tamarix floral attributes and insect visitation patterns during 2010 and 2011 at three locations along a deep DWG gradient (3.2–4.1 m) on a floodplain terrace adjacent to Las Vegas Wash, an effluent-dominated Mojave Desert stream. Flower abundance and insect visitation patterns differed between years, but no effect from DGW on either F or N was detected. An eruption of a novel non-native herbivore, the splendid tamarisk weevil (Coniatus splendidulus), likely reduced flower production in 2011.

BWR ASSEMBLY SOURCE TERMS FOR WASTE PACKAGE DESIGN

DOE Office of Scientific and Technical Information (OSTI.GOV)

T.L. Lotz

1997-02-15

This analysis is prepared by the Mined Geologic Disposal System (MGDS) Waste Package Development Department (WPDD) to provide boiling water reactor (BWR) assembly radiation source term data for use during Waste Package (WP) design. The BWR assembly radiation source terms are to be used for evaluation of radiolysis effects at the WP surface, and for personnel shielding requirements during assembly or WP handling operations. The objectives of this evaluation are to generate BWR assembly radiation source terms that bound selected groupings of BWR assemblies, with regard to assembly average burnup and cooling time, which comprise the anticipated MGDS BWR commercialmore » spent nuclear fuel (SNF) waste stream. The source term data is to be provided in a form which can easily be utilized in subsequent shielding/radiation dose calculations. Since these calculations may also be used for Total System Performance Assessment (TSPA), with appropriate justification provided by TSPA, or radionuclide release rate analysis, the grams of each element and additional cooling times out to 25 years will also be calculated and the data included in the output files.« less

Workflows for Full Waveform Inversions

NASA Astrophysics Data System (ADS)

Boehm, Christian; Krischer, Lion; Afanasiev, Michael; van Driel, Martin; May, Dave A.; Rietmann, Max; Fichtner, Andreas

2017-04-01

Despite many theoretical advances and the increasing availability of high-performance computing clusters, full seismic waveform inversions still face considerable challenges regarding data and workflow management. While the community has access to solvers which can harness modern heterogeneous computing architectures, the computational bottleneck has fallen to these often manpower-bounded issues that need to be overcome to facilitate further progress. Modern inversions involve huge amounts of data and require a tight integration between numerical PDE solvers, data acquisition and processing systems, nonlinear optimization libraries, and job orchestration frameworks. To this end we created a set of libraries and applications revolving around Salvus (http://salvus.io), a novel software package designed to solve large-scale full waveform inverse problems. This presentation focuses on solving passive source seismic full waveform inversions from local to global scales with Salvus. We discuss (i) design choices for the aforementioned components required for full waveform modeling and inversion, (ii) their implementation in the Salvus framework, and (iii) how it is all tied together by a usable workflow system. We combine state-of-the-art algorithms ranging from high-order finite-element solutions of the wave equation to quasi-Newton optimization algorithms using trust-region methods that can handle inexact derivatives. All is steered by an automated interactive graph-based workflow framework capable of orchestrating all necessary pieces. This naturally facilitates the creation of new Earth models and hopefully sparks new scientific insights. Additionally, and even more importantly, it enhances reproducibility and reliability of the final results.

Use of stream chemistry for monitoring acidic deposition effects in the Adirondack region of New York

USGS Publications Warehouse

Lawrence, G.B.; Momen, B.; Roy, K.M.

2004-01-01

Acid-neutralizing capacity (ANC) and pH were measured weekly from October 1991 through September 2001 in three streams in the western Adirondack Mountain region of New York to identify trends in stream chemistry that might be related to changes in acidic deposition. A decreasing trend in atmospheric deposition of SO42- was observed within the region over the 10-yr period, although most of the decrease occurred between 1991 and 1995. Both ANC and pH were inversely related to flow in all streams; therefore, a trend analysis was conducted on (i) the measured values of ANC and pH and (ii) the residuals of the concentration-discharge relations. In Buck Creek, ANC increased significantly (p 0.10). In Bald Mountain Brook, ANC and residuals of ANC increased significantly (p < 0.01), although the trend was diatonic-a distinct decrease from 1991 to 1996 was followed by a distinct increase from 1996 to 2001. In Fly Pond outlet, ANC and residuals of ANC increased over the study period (p < 0.01), although the trend of the residuals resulted largely from an abrupt increase in 1997. In general, the trends observed in the three streams are similar to results presented for Adirondack lakes in a previous study, and are consistent with the declining trend in atmospheric deposition for this region, although the observed trends in ANC and pH in streams could not be directly attributed to the trends in acidic deposition.

[Methodology for Identification of Inverse Drug Distribution, Spain].

PubMed

López Pérez, M Arantzazu; Muñoz Arias, Mariano; Vázquez Mourelle, Raquel

2016-04-04

The phenomenon of reverse drug trafficking in the legal supply chain is an unlawful practice to serious risks to public health. The aims was to identify proactively pharmacies that carry out these illegal activities. An analysis was performed through the crossing billing data to SAS of 52 million packs of medicines for the 496 pharmacies in the province over a period of 29 months with the drug packaging data supplied by the distribution entities of the province with the implementation of specific indicator defined called 'percentage overbought' allows us to detect those pharmacies at high risk of being involved in this illicit trade. It was tested in two pharmacies one rural and other urban a detour of 5.130 medicine containers and an illicit profit obtained from € 9,591.78 for the first and 9.982 packaging and € 26,885.11 for the second; they had gone unnoticed in previous inspections. The methodology implemented to define a profile of infringing pharmacies high risk in these illicit practices, identify new ones that had not been sanctioned, weigh the drugs for illegal trade and to identify new drugs subject to diversion; also added as a challenge, it helps to adjust accurately and effectively calculate the illicit profit obtained.

Can a one-layer optical skin model including melanin and inhomogeneously distributed blood explain spatially resolved diffuse reflectance spectra?

NASA Astrophysics Data System (ADS)

Karlsson, Hanna; Pettersson, Anders; Larsson, Marcus; Strömberg, Tomas

2011-02-01

Model based analysis of calibrated diffuse reflectance spectroscopy can be used for determining oxygenation and concentration of skin chromophores. This study aimed at assessing the effect of including melanin in addition to hemoglobin (Hb) as chromophores and compensating for inhomogeneously distributed blood (vessel packaging), in a single-layer skin model. Spectra from four humans were collected during different provocations using a twochannel fiber optic probe with source-detector separations 0.4 and 1.2 mm. Absolute calibrated spectra using data from either a single distance or both distances were analyzed using inverse Monte Carlo for light transport and Levenberg-Marquardt for non-linear fitting. The model fitting was excellent using a single distance. However, the estimated model failed to explain spectra from the other distance. The two-distance model did not fit the data well at either distance. Model fitting was significantly improved including melanin and vessel packaging. The most prominent effect when fitting data from the larger separation compared to the smaller separation was a different light scattering decay with wavelength, while the tissue fraction of Hb and saturation were similar. For modeling spectra at both distances, we propose using either a multi-layer skin model or a more advanced model for the scattering phase function.

DE-1 observations of polar O(+) stream bulk parameters and comparison with a model of the centrifugally-accelerated polar wind

NASA Technical Reports Server (NTRS)

Ho, C. Wing; Horwitz, J. L.

1995-01-01

A survey of bulk parameters of analyzable O(+) outward streams in the mid-altitude (3-4.7 R(sub E) geocentric distance) polar cap magnetosphere is obtained from measurements by the Retarding Ion Mass Spectrometer (RIMS) aboard the Dynamics Explorer-1 (DE-1) spacecraft. There is wide scatter in the obtained densities, but they do display discernible trends: the average O(+) density in these streams decreases from about 60 ions/cc at 3.5 R(sub E) to about 1 ion/cc at 4.6 R(sub E). The streaming velocities are somewhat more defined, and their average increases from about 8 km/s at 3.5 R(sub E) to about 12 km/s at 4.6 R(sub E). The densities and bulk velocities are inversely correlated. We have further compared these observational trends with model profiles for the centrifugally-accelerated polar wind as recently described by Horwitz et al. (1994). The large outflow velocities observed can be understood in part as centrifugally-driven by convection with ionospheric electric field magnitudes of the order 50-70 mV/m, perhaps including plasma expansion effects.

Program Instrumentation and Trace Analysis

NASA Technical Reports Server (NTRS)

Havelund, Klaus; Goldberg, Allen; Filman, Robert; Rosu, Grigore; Koga, Dennis (Technical Monitor)

2002-01-01

Several attempts have been made recently to apply techniques such as model checking and theorem proving to the analysis of programs. This shall be seen as a current trend to analyze real software systems instead of just their designs. This includes our own effort to develop a model checker for Java, the Java PathFinder 1, one of the very first of its kind in 1998. However, model checking cannot handle very large programs without some kind of abstraction of the program. This paper describes a complementary scalable technique to handle such large programs. Our interest is turned on the observation part of the equation: How much information can be extracted about a program from observing a single execution trace? It is our intention to develop a technology that can be applied automatically and to large full-size applications, with minimal modification to the code. We present a tool, Java PathExplorer (JPaX), for exploring execution traces of Java programs. The tool prioritizes scalability for completeness, and is directed towards detecting errors in programs, not to prove correctness. One core element in JPaX is an instrumentation package that allows to instrument Java byte code files to log various events when executed. The instrumentation is driven by a user provided script that specifies what information to log. Examples of instructions that such a script can contain are: 'report name and arguments of all called methods defined in class C, together with a timestamp'; 'report all updates to all variables'; and 'report all acquisitions and releases of locks'. In more complex instructions one can specify that certain expressions should be evaluated and even that certain code should be executed under various conditions. The instrumentation package can hence be seen as implementing Aspect Oriented Programming for Java in the sense that one can add functionality to a Java program without explicitly changing the code of the original program, but one rather writes an aspect and compiles it into the original program using the instrumentation. Another core element of JPaX is an observation package that supports the analysis of the generated event stream. Two kinds of analysis are currently supported. In temporal analysis the execution trace is evaluated against formulae written in temporal logic. We have implemented a temporal logic evaluator on finite traces using the Maude rewriting system from SRI International, USA. Temporal logic is defined in Maude by giving its syntax as a signature and its semantics as rewrite equations. The resulting semantics is extremely efficient and can handle event streams of hundreds of millions events in few minutes. Furthermore, the implementation is very succinct. The second form of even stream analysis supported is error pattern analysis where an execution trace is analyzed using various error detection algorithms that can identify error-prone programming practices that may potentially lead to errors in some different executions. Two such algorithms focusing on concurrency errors have been implemented in JPaX, one for deadlocks and the other for data races. It is important to note, that a deadlock or data race potential does not need to occur in order for its potential to be detected with these algorithms. This is what makes them very scalable in practice. The data race algorithm implemented is the Eraser algorithm from Compaq, however adopted to Java. The tool is currently being applied to a code base for controlling a spacecraft by the developers of that software in order to evaluate its applicability.

Wide Area Recovery and Resiliency Program (WARRP) Knowledge Enhancement Events: Waste Management Workshop After Action Report

DTIC Science & Technology

2012-03-01

approximately 2,300 curies of 137Cs (CsCl), and 1.5 tons of Ammonium nitrate / Fuel oil (ANFO). The explosive and the shielded CsCl sources are packaged into...previous findings. Experts also presented case studies on Hurricane Katrina, The British Petroleum (BP) Oil Spill, Fukushima Japan, Foot and Mouth...containers, conduct environmental monitoring. The waste streams were very organized into distinct categories. 1) oil , gasoline, pesticides, 2) batteries

Skylab program earth resouces experiment package. Volume 4: Sensor performance evaluation (S193 R/S). [radiometer/scatterometer

NASA Technical Reports Server (NTRS)

Kenney, G. P.

1975-01-01

The results of the sensor performance evaluation of the 13.9 GHz radiometer/scatterometer, which was part of the earth resources experiment package on Skylab. Findings are presented in the areas of housekeeping parameters, antenna gain and scanning performance, dynamic range, linearity, precision, resolution, stability, integration time, and transmitter output. Supplementary analyses covering performance anomalies, data stream peculiarities, aircraft sensor data comparisons, scatterometer saturation characteristics, and RF heating effects are reported. Results of the evaluation show that instrument performance was generally as expected, but capability degradations were observed to result from three major anomalies. Conclusions are drawn from the evaluation results, and recommendations for improving the effectiveness of a future program are offered. An addendum describes the special evaluation techniques developed and applied in the sensor performance evaluation tasks.

A new full-Stokes model as a tool for basal inversions.

NASA Astrophysics Data System (ADS)

Kyrke-Smith, Teresa M.; Hilmar Gudmundsson, G.; Farrell, Patrick E.

2016-04-01

High resolution models of ice sheet dynamics are required to make accurate predictions of the future mass balance of ice sheets. These require knowledge of flow conditions at the bed of the ice, however, the inaccessibility of the bed means there exist few observational constraints. Inverse methods are therefore commonly used to obtain information about the nature of basal control using given surface observations. We present a new 3D Stokes solver written using FEniCS with the potential to carry out second-order inversions for basal slipperiness. We will be applying the model to Pine Island Glacier, Antarctica. Pine Island Glacier is one of the fastest flowing and most rapidly changing ice streams in Antarctica, and is currently contributing to sea-level rise at an increasing rate. Recent field seasons as part of the iSTAR project have acquired high-resolution in-situ geophysical measurements; results from our model will be compared with these to try and increase understanding about the conditions at the bed of Pine Island Glacier.

GenoMatrix: A Software Package for Pedigree-Based and Genomic Prediction Analyses on Complex Traits.

PubMed

Nazarian, Alireza; Gezan, Salvador Alejandro

2016-07-01

Genomic and pedigree-based best linear unbiased prediction methodologies (G-BLUP and P-BLUP) have proven themselves efficient for partitioning the phenotypic variance of complex traits into its components, estimating the individuals' genetic merits, and predicting unobserved (or yet-to-be observed) phenotypes in many species and fields of study. The GenoMatrix software, presented here, is a user-friendly package to facilitate the process of using genome-wide marker data and parentage information for G-BLUP and P-BLUP analyses on complex traits. It provides users with a collection of applications which help them on a set of tasks from performing quality control on data to constructing and manipulating the genomic and pedigree-based relationship matrices and obtaining their inverses. Such matrices will be then used in downstream analyses by other statistical packages. The package also enables users to obtain predicted values for unobserved individuals based on the genetic values of observed related individuals. GenoMatrix is available to the research community as a Windows 64bit executable and can be downloaded free of charge at: http://compbio.ufl.edu/software/genomatrix/. © The American Genetic Association. 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Scilab software as an alternative low-cost computing in solving the linear equations problem

NASA Astrophysics Data System (ADS)

Agus, Fahrul; Haviluddin

2017-02-01

Numerical computation packages are widely used both in teaching and research. These packages consist of license (proprietary) and open source software (non-proprietary). One of the reasons to use the package is a complexity of mathematics function (i.e., linear problems). Also, number of variables in a linear or non-linear function has been increased. The aim of this paper was to reflect on key aspects related to the method, didactics and creative praxis in the teaching of linear equations in higher education. If implemented, it could be contribute to a better learning in mathematics area (i.e., solving simultaneous linear equations) that essential for future engineers. The focus of this study was to introduce an additional numerical computation package of Scilab as an alternative low-cost computing programming. In this paper, Scilab software was proposed some activities that related to the mathematical models. In this experiment, four numerical methods such as Gaussian Elimination, Gauss-Jordan, Inverse Matrix, and Lower-Upper Decomposition (LU) have been implemented. The results of this study showed that a routine or procedure in numerical methods have been created and explored by using Scilab procedures. Then, the routine of numerical method that could be as a teaching material course has exploited.

Inverse analysis of water profile in starch by non-contact photopyroelectric method

NASA Astrophysics Data System (ADS)

Frandas, A.; Duvaut, T.; Paris, D.

2000-07-01

The photopyroelectric (PPE) method in a non-contact configuration was proposed to study water migration in starch sheets used for biodegradable packaging. A 1-D theoretical model was developed, allowing the study of samples having a water profile characterized by an arbitrary continuous function. An experimental setup was designed or this purpose which included the choice of excitation source, detection of signals, signal and data processing, and cells for conditioning the samples. We report here the development of an inversion procedure allowing for the determination of the parameters that influence the PPE signal. This procedure led to the optimization of experimental conditions in order to identify the parameters related to the water profile in the sample, and to monitor the dynamics of the process.

[Implication of inverse-probability weighting method in the evaluation of diagnostic test with verification bias].

PubMed

Kang, Leni; Zhang, Shaokai; Zhao, Fanghui; Qiao, Youlin

2014-03-01

To evaluate and adjust the verification bias existed in the screening or diagnostic tests. Inverse-probability weighting method was used to adjust the sensitivity and specificity of the diagnostic tests, with an example of cervical cancer screening used to introduce the Compare Tests package in R software which could be implemented. Sensitivity and specificity calculated from the traditional method and maximum likelihood estimation method were compared to the results from Inverse-probability weighting method in the random-sampled example. The true sensitivity and specificity of the HPV self-sampling test were 83.53% (95%CI:74.23-89.93)and 85.86% (95%CI: 84.23-87.36). In the analysis of data with randomly missing verification by gold standard, the sensitivity and specificity calculated by traditional method were 90.48% (95%CI:80.74-95.56)and 71.96% (95%CI:68.71-75.00), respectively. The adjusted sensitivity and specificity under the use of Inverse-probability weighting method were 82.25% (95% CI:63.11-92.62) and 85.80% (95% CI: 85.09-86.47), respectively, whereas they were 80.13% (95%CI:66.81-93.46)and 85.80% (95%CI: 84.20-87.41) under the maximum likelihood estimation method. The inverse-probability weighting method could effectively adjust the sensitivity and specificity of a diagnostic test when verification bias existed, especially when complex sampling appeared.

Summer water use by mixed-age and young forest stands, Mattole River, northern California, U.S.A

Treesearch

Andrew Stubblefield; Max Kaufman; Greg Blomstrom; John Rogers

2012-01-01

Resource managers have noted a decline in summer flow levels in the last decade in the Mattole River watershed, Humboldt County, California. Reduced river flows pose a threat to endangered coho and chinook salmon in the watershed, as stream heating is inversely proportional to discharge. While the cause of the reduced flow is unclear, several factors have been cited:...

The role of Coulomb collisions in limiting differential flow and temperature differences in the solar wind

NASA Technical Reports Server (NTRS)

Neugebauer, M.

1976-01-01

Data obtained by OGO 5 are used to confirm IMP 6 observations of an inverse dependence of the helium-to-hydrogen temperature ratio in the solar wind on the ratio of solar-wind expansion time to the Coulomb-collision equipartition time. The analysis is then extended to determine the relation of the difference between the hydrogen and helium bulk velocities (the differential flow vector) with the ratio between the solar-wind expansion time and the time required for Coulomb collisions to slow down a beam of ions passing through a plasma. It is found that the magnitude of the differential flow vector varies inversely with the time ratio when the latter is small and approaches zero when it is large. These results are shown to suggest a model of continuous preferential heating and acceleration of helium (or cooling and deceleration of hydrogen), which is cancelled or limited by Coulomb collisions by the time the plasma has reached 1 AU. Since the average dependence of the differential flow vector on the time ratio cannot explain all the systematic variations of the vector observed in corotating high-velocity streams, it is concluded that additional helium acceleration probably occurs on the leading edge of such streams.

A Matlab toolkit for three-dimensional electrical impedance tomography: a contribution to the Electrical Impedance and Diffuse Optical Reconstruction Software project

NASA Astrophysics Data System (ADS)

Polydorides, Nick; Lionheart, William R. B.

2002-12-01

The objective of the Electrical Impedance and Diffuse Optical Reconstruction Software project is to develop freely available software that can be used to reconstruct electrical or optical material properties from boundary measurements. Nonlinear and ill posed problems such as electrical impedance and optical tomography are typically approached using a finite element model for the forward calculations and a regularized nonlinear solver for obtaining a unique and stable inverse solution. Most of the commercially available finite element programs are unsuitable for solving these problems because of their conventional inefficient way of calculating the Jacobian, and their lack of accurate electrode modelling. A complete package for the two-dimensional EIT problem was officially released by Vauhkonen et al at the second half of 2000. However most industrial and medical electrical imaging problems are fundamentally three-dimensional. To assist the development we have developed and released a free toolkit of Matlab routines which can be employed to solve the forward and inverse EIT problems in three dimensions based on the complete electrode model along with some basic visualization utilities, in the hope that it will stimulate further development. We also include a derivation of the formula for the Jacobian (or sensitivity) matrix based on the complete electrode model.

Dragonfly: an implementation of the expand-maximize-compress algorithm for single-particle imaging.

PubMed

Ayyer, Kartik; Lan, Ti-Yen; Elser, Veit; Loh, N Duane

2016-08-01

Single-particle imaging (SPI) with X-ray free-electron lasers has the potential to change fundamentally how biomacromolecules are imaged. The structure would be derived from millions of diffraction patterns, each from a different copy of the macromolecule before it is torn apart by radiation damage. The challenges posed by the resultant data stream are staggering: millions of incomplete, noisy and un-oriented patterns have to be computationally assembled into a three-dimensional intensity map and then phase reconstructed. In this paper, the Dragonfly software package is described, based on a parallel implementation of the expand-maximize-compress reconstruction algorithm that is well suited for this task. Auxiliary modules to simulate SPI data streams are also included to assess the feasibility of proposed SPI experiments at the Linac Coherent Light Source, Stanford, California, USA.

Space robot simulator vehicle

NASA Technical Reports Server (NTRS)

Cannon, R. H., Jr.; Alexander, H.

1985-01-01

A Space Robot Simulator Vehicle (SRSV) was constructed to model a free-flying robot capable of doing construction, manipulation and repair work in space. The SRSV is intended as a test bed for development of dynamic and static control methods for space robots. The vehicle is built around a two-foot-diameter air-cushion vehicle that carries batteries, power supplies, gas tanks, computer, reaction jets and radio equipment. It is fitted with one or two two-link manipulators, which may be of many possible designs, including flexible-link versions. Both the vehicle body and its first arm are nearly complete. Inverse dynamic control of the robot's manipulator has been successfully simulated using equations generated by the dynamic simulation package SDEXACT. In this mode, the position of the manipulator tip is controlled not by fixing the vehicle base through thruster operation, but by controlling the manipulator joint torques to achieve the desired tip motion, while allowing for the free motion of the vehicle base. One of the primary goals is to minimize use of the thrusters in favor of intelligent control of the manipulator. Ways to reduce the computational burden of control are described.

Package Design Affects Accuracy Recognition for Medications.

PubMed

Endestad, Tor; Wortinger, Laura A; Madsen, Steinar; Hortemo, Sigurd

2016-12-01

Our aim was to test if highlighting and placement of substance name on medication package have the potential to reduce patient errors. An unintentional overdose of medication is a large health issue that might be linked to medication package design. In two experiments, placement, background color, and the active ingredient of generic medication packages were manipulated according to best human factors guidelines to reduce causes of labeling-related patient errors. In two experiments, we compared the original packaging with packages where we varied placement of the name, dose, and background of the active ingredient. Age-relevant differences and the effect of color on medication recognition error were tested. In Experiment 1, 59 volunteers (30 elderly and 29 young students), participated. In Experiment 2, 25 volunteers participated. The most common error was the inability to identify that two different packages contained the same active ingredient (young, 41%, and elderly, 68%). This kind of error decreased with the redesigned packages (young, 8%, and elderly, 16%). Confusion errors related to color design were reduced by two thirds in the redesigned packages compared with original generic medications. Prominent placement of substance name and dose with a band of high-contrast color support recognition of the active substance in medications. A simple modification including highlighting and placing the name of the active ingredient in the upper right-hand corner of the package helps users realize that two different packages can contain the same active substance, thus reducing the risk of inadvertent medication overdose. © 2016, Human Factors and Ergonomics Society.

Package Design Affects Accuracy Recognition for Medications

PubMed Central

Endestad, Tor; Wortinger, Laura A.; Madsen, Steinar; Hortemo, Sigurd

2016-01-01

Objective: Our aim was to test if highlighting and placement of substance name on medication package have the potential to reduce patient errors. Background: An unintentional overdose of medication is a large health issue that might be linked to medication package design. In two experiments, placement, background color, and the active ingredient of generic medication packages were manipulated according to best human factors guidelines to reduce causes of labeling-related patient errors. Method: In two experiments, we compared the original packaging with packages where we varied placement of the name, dose, and background of the active ingredient. Age-relevant differences and the effect of color on medication recognition error were tested. In Experiment 1, 59 volunteers (30 elderly and 29 young students), participated. In Experiment 2, 25 volunteers participated. Results: The most common error was the inability to identify that two different packages contained the same active ingredient (young, 41%, and elderly, 68%). This kind of error decreased with the redesigned packages (young, 8%, and elderly, 16%). Confusion errors related to color design were reduced by two thirds in the redesigned packages compared with original generic medications. Conclusion: Prominent placement of substance name and dose with a band of high-contrast color support recognition of the active substance in medications. Application: A simple modification including highlighting and placing the name of the active ingredient in the upper right-hand corner of the package helps users realize that two different packages can contain the same active substance, thus reducing the risk of inadvertent medication overdose. PMID:27591209

Relative merits of polystyrene foam and paper in hot drink cups: Implications for packaging

NASA Astrophysics Data System (ADS)

Hocking, Martin B.

1991-11-01

An analysis of the overall relative merits of the use of uncoated paper vs molded polystyrene bead foam in single-use 8-oz cups is described here as a manageable example of the use of paper vs plastics in packaging. In raw material requirements the paper cup required about 2.5 times its finished weight of raw wood and about the same hydrocarbon fueling requirement as is needed for the polystyrene foam cup. To process the raw materials about six times as much steam, 13 times as much electric power, and twice as much cooling water are consumed to produce the paper cup as compared to the polystyrene foam cup. Emission rates to air are similar and to water are generally higher for the paper cup. Virtually all primary use factors favor polystyrene foam over paper. Once used both cup types may be recycled. Landfill disposal of the two items under dry conditions will occupy similar landfill volumes after compaction and will confer similarly slow to nonexistent decomposition to either option. Under wet conditions polystyrene foam will not readily degrade, but may help other materials to do so. Paper under wet conditions will biodegrade to produce methane, a significant greenhouse gas, biochemical oxygen demand to any leachate, and instability to the land surface during the process. Both materials can be incinerated cleanly in a municipal waste stream with the option of energy recovery, to yield an ash volume of 2% 5% of the incoming waste volume. Overall this analysis would suggest that polystyrene foam, with an extension to plastics in general, should be given more evenhanded consideration relative to paper in packaging applications than is currently the case.

Tests of potential functional barriers for laminated multilayer food packages. Part I: Low molecular weight permeants.

PubMed

Simal-Gándara, J; Sarria-Vidal, M; Koorevaar, A; Rijk, R

2000-08-01

The advent of the functional barrier concept in food packaging has brought with it a requirement for fast tests of permeation through potential barrier materials. In such tests it would be convenient for both foodstuffs and materials below the functional barrier (sub-barrier materials) to be represented by standard simulants. By means of inverse gas chromatography, liquid paraffin spiked with appropriate permeants was considered as a potential simulant of sub-barrier materials based on polypropylene (PP) or similar polyolefins. Experiments were performed to characterize the kinetics of the permeation of low molecular weight model permeants (octene, toluene and isopropanol) from liquid paraffin, through a surrogate potential functional barrier (25 microns-thick oriented PP) into the food stimulants olive oil and 3% (w/v) acetic acid. These permeation results were interpreted in terms of three permeation kinetic models regarding the solubility of a particular model permeant in the post-barrier medium (i.e. the food simulant). The results obtained justify the development and evaluation of liquid sub-barrier simulants that would allow flexible yet rigorous testing of new laminated multilayer packaging materials.

Naima: a Python package for inference of particle distribution properties from nonthermal spectra

NASA Astrophysics Data System (ADS)

Zabalza, V.

2015-07-01

The ultimate goal of the observation of nonthermal emission from astrophysical sources is to understand the underlying particle acceleration and evolution processes, and few tools are publicly available to infer the particle distribution properties from the observed photon spectra from X-ray to VHE gamma rays. Here I present naima, an open source Python package that provides models for nonthermal radiative emission from homogeneous distribution of relativistic electrons and protons. Contributions from synchrotron, inverse Compton, nonthermal bremsstrahlung, and neutral-pion decay can be computed for a series of functional shapes of the particle energy distributions, with the possibility of using user-defined particle distribution functions. In addition, naima provides a set of functions that allow to use these models to fit observed nonthermal spectra through an MCMC procedure, obtaining probability distribution functions for the particle distribution parameters. Here I present the models and methods available in naima and an example of their application to the understanding of a galactic nonthermal source. naima's documentation, including how to install the package, is available at http://naima.readthedocs.org.

Waterborne spectral induced polarization imaging to investigate stream-aquifer exchange

NASA Astrophysics Data System (ADS)

Hoehn, Philipp; Flores Orozco, Adrián; Hofmann, Thilo

2017-04-01

Detailed information about the geometrical and hydraulic properties of a streambed's colmation layer is critical for accurate numerical modelling of stream-aquifer exchange, which in turn is of pivotal importance for adequate groundwater management at bank filtration sites. Inverse methods in numerical groundwater modeling tend to bear high spatial uncertainty and existing methods are limited, e.g. fiber-optic distributed temperature sensing (FO-DTS) by its unidirectional sensitivity towards groundwater discharge. To overcome such deficiencies we propose the application of high resolution spectral induced polarization (SIP) imaging. The objective was to elucidate its capability to provide spatial estimates of parameters of a Cauchy-type boundary condition in groundwater flow modeling, namely hydraulic conductivity and thickness of potentially colmated substream sediment as well as stream stage. SIP measurements were collected along selected reaches of a losing-disconnected subalpine stream in a broad frequency bandwidth (0.063-225 Hz) using an array of 32 electrodes (at 1 m spacing), which was fully submerged at the stream bottom, while the equipment was mounted on a stationary-positioned inflatable rubber boat. A total of 32 transient infiltration tests, using an open-bottom standpipe (4.2 cm inner diameter), were performed to determine vertical hydraulic conductivity (kv) of the streambed at discrete positions along the electrical arrays. Imaging results of the real component of the complex electrical conductivity (σ') permitted to delineate stream stage and the general substream architecture; whereas the imaginary component (σ") revealed larger variability within the substream sediment, likely related to changes in the textural parameters. The kv dataset confirms the textural variability with values varying between 3•10-2 and 5•10-7 ms-1. The electrical imaging results exhibit the strongest polarization response at 75 Hz, suggesting that fine grains, as the dominating length scale, are enhancing the polarization response. The relationship between σ" and kv reveals an inverse linear relationship, in accordance with laboratory studies, with higher correlation observed at 75 Hz. Yet, the σ"-kv correlation is rather weak, likely due to (i) the differences in the volume of investigation considering the given 4-electrode array in the SIP data (3m) and the punctual kv measurements (0.042 m) and (ii) sample disturbance when installing standpipes in streambed sediment. Nevertheless, in the frequency range around 75 Hz, patterns of the first derivatives of σ" as a function of depth suggest the possibility to extract the distribution of stream stage in agreement with measured values. Furthermore, SIP imaging results permitted to delineate the geometry of an immediate sub-stream layer, associated to the strongest polarization effect, as expected of a streambed colmation layer, commonly related to lower hydraulic conductivity compared to the underlying aquifer material. Our results demonstrate the potential of SIP images to improve groundwater flow modeling by providing necessary estimates for Cauchy-type boundary conditions at longer stream-aquifer interfaces; yet, the quantification of hydraulic conductivity based on SIP images at the field scale remains an open area of research.

Two-stream instability with time-dependent drift velocity

DOE PAGES

Qin, Hong; Davidson, Ronald C.

2014-06-26

The classical two-stream instability driven by a constant relative drift velocity between two plasma components is extended to the case with time-dependent drift velocity. A solution method is developed to rigorously define and calculate the instability growth rate for linear perturbations relative to the time-dependent unperturbed two-stream motions. The stability diagrams for the oscillating two-stream instability are presented over a large region of parameter space. It is shown that the growth rate for the classical two-stream instability can be significantly reduced by adding an oscillatory component to the relative drift velocity.

SCHEMA computational design of virus capsid chimeras: calibrating how genome packaging, protection, and transduction correlate with calculated structural disruption.

PubMed

Ho, Michelle L; Adler, Benjamin A; Torre, Michael L; Silberg, Jonathan J; Suh, Junghae

2013-12-20

Adeno-associated virus (AAV) recombination can result in chimeric capsid protein subunits whose ability to assemble into an oligomeric capsid, package a genome, and transduce cells depends on the inheritance of sequence from different AAV parents. To develop quantitative design principles for guiding site-directed recombination of AAV capsids, we have examined how capsid structural perturbations predicted by the SCHEMA algorithm correlate with experimental measurements of disruption in seventeen chimeric capsid proteins. In our small chimera population, created by recombining AAV serotypes 2 and 4, we found that protection of viral genomes and cellular transduction were inversely related to calculated disruption of the capsid structure. Interestingly, however, we did not observe a correlation between genome packaging and calculated structural disruption; a majority of the chimeric capsid proteins formed at least partially assembled capsids and more than half packaged genomes, including those with the highest SCHEMA disruption. These results suggest that the sequence space accessed by recombination of divergent AAV serotypes is rich in capsid chimeras that assemble into 60-mer capsids and package viral genomes. Overall, the SCHEMA algorithm may be useful for delineating quantitative design principles to guide the creation of libraries enriched in genome-protecting virus nanoparticles that can effectively transduce cells. Such improvements to the virus design process may help advance not only gene therapy applications but also other bionanotechnologies dependent upon the development of viruses with new sequences and functions.

SCHEMA computational design of virus capsid chimeras: calibrating how genome packaging, protection, and transduction correlate with calculated structural disruption

PubMed Central

Ho, Michelle L.; Adler, Benjamin A.; Torre, Michael L.; Silberg, Jonathan J.; Suh, Junghae

2013-01-01

Adeno-associated virus (AAV) recombination can result in chimeric capsid protein subunits whose ability to assemble into an oligomeric capsid, package a genome, and transduce cells depends on the inheritance of sequence from different AAV parents. To develop quantitative design principles for guiding site-directed recombination of AAV capsids, we have examined how capsid structural perturbations predicted by the SCHEMA algorithm correlate with experimental measurements of disruption in seventeen chimeric capsid proteins. In our small chimera population, created by recombining AAV serotypes 2 and 4, we found that protection of viral genomes and cellular transduction were inversely related to calculated disruption of the capsid structure. Interestingly, however, we did not observe a correlation between genome packaging and calculated structural disruption; a majority of the chimeric capsid proteins formed at least partially assembled capsids and more than half packaged genomes, including those with the highest SCHEMA disruption. These results suggest that the sequence space accessed by recombination of divergent AAV serotypes is rich in capsid chimeras that assemble into 60-mer capsids and package viral genomes. Overall, the SCHEMA algorithm may be useful for delineating quantitative design principles to guide the creation of libraries enriched in genome-protecting virus nanoparticles that can effectively transduce cells. Such improvements to the virus design process may help advance not only gene therapy applications, but also other bionanotechnologies dependent upon the development of viruses with new sequences and functions. PMID:23899192

Estimation of baseline daily mean streamflows for ungaged locations on Pennsylvania streams, water years 1960-2008

USGS Publications Warehouse

Stuckey, Marla H.; Koerkle, Edward H.; Ulrich, James E.

2012-01-01

BaSE uses the map correlation method and flow-duration exceedance probability regression equations to estimate baseline daily mean streamflow for an ungaged location. The output from BaSE is a Microsoft Excel® report file that summarizes the reference streamgage and ungaged location information, including basin characteristics, percent difference in basin characteristics between the two locations, any warning associated with the basin characteristics, mean and median streamflow for the ungaged location, and a daily hydrograph of streamflow for water years 1960–2008 for the ungaged location. The daily mean streamflow for the ungaged location can be exported as a text file to be used as input into other statistical software packages. BaSE estimates daily mean streamflow for baseline conditions only, and any alterations to streamflow from regulation, large water use, or substantial mining are not reflected in the estimated streamflow.

A comparison of cylindrical and row trenched cooling holes with alignment angle of 0 degree near the combustor endwall

NASA Astrophysics Data System (ADS)

Kianpour, E.; Nor Azwadi, C. S.; Golshokouh, I.

2013-12-01

We studied the effects of cylindrical and row trenched cooling holes with alignment angle of 0° at BR=3.18 on the film cooling performance near the endwall surface of a combustor simulator. In this research, a three-dimensional presentation of gas turbine engine was simulated and analyzed with a commercial finite volume package FLUENT 6.2.26 to gain fundamental data. The current study has been performed with Reynolds-averaged Navier-Stokes turbulence model (RANS) on internal cooling passages. This combustor simulator combined the interaction of two rows of dilution jets, which were staggered in the stream wise direction and aligned in the span wise direction. The entire findings of the study declared that with using the row trenched holes near the enwall surface; film cooling effectiveness is doubled compared to the cooling performance of baseline case.

A practical method to assess model sensitivity and parameter uncertainty in C cycle models

NASA Astrophysics Data System (ADS)

Delahaies, Sylvain; Roulstone, Ian; Nichols, Nancy

2015-04-01

The carbon cycle combines multiple spatial and temporal scales, from minutes to hours for the chemical processes occurring in plant cells to several hundred of years for the exchange between the atmosphere and the deep ocean and finally to millennia for the formation of fossil fuels. Together with our knowledge of the transformation processes involved in the carbon cycle, many Earth Observation systems are now available to help improving models and predictions using inverse modelling techniques. A generic inverse problem consists in finding a n-dimensional state vector x such that h(x) = y, for a given N-dimensional observation vector y, including random noise, and a given model h. The problem is well posed if the three following conditions hold: 1) there exists a solution, 2) the solution is unique and 3) the solution depends continuously on the input data. If at least one of these conditions is violated the problem is said ill-posed. The inverse problem is often ill-posed, a regularization method is required to replace the original problem with a well posed problem and then a solution strategy amounts to 1) constructing a solution x, 2) assessing the validity of the solution, 3) characterizing its uncertainty. The data assimilation linked ecosystem carbon (DALEC) model is a simple box model simulating the carbon budget allocation for terrestrial ecosystems. Intercomparison experiments have demonstrated the relative merit of various inverse modelling strategies (MCMC, ENKF) to estimate model parameters and initial carbon stocks for DALEC using eddy covariance measurements of net ecosystem exchange of CO2 and leaf area index observations. Most results agreed on the fact that parameters and initial stocks directly related to fast processes were best estimated with narrow confidence intervals, whereas those related to slow processes were poorly estimated with very large uncertainties. While other studies have tried to overcome this difficulty by adding complementary data streams or by considering longer observation windows no systematic analysis has been carried out so far to explain the large differences among results. We consider adjoint based methods to investigate inverse problems using DALEC and various data streams. Using resolution matrices we study the nature of the inverse problems (solution existence, uniqueness and stability) and show how standard regularization techniques affect resolution and stability properties. Instead of using standard prior information as a penalty term in the cost function to regularize the problems we constraint the parameter space using ecological balance conditions and inequality constraints. The efficiency and rapidity of this approach allows us to compute ensembles of solutions to the inverse problems from which we can establish the robustness of the variational method and obtain non Gaussian posterior distributions for the model parameters and initial carbon stocks.

Vortex breakdown simulation

NASA Technical Reports Server (NTRS)

Hafez, M.; Ahmad, J.; Kuruvila, G.; Salas, M. D.

1987-01-01

In this paper, steady, axisymmetric inviscid, and viscous (laminar) swirling flows representing vortex breakdown phenomena are simulated using a stream function-vorticity-circulation formulation and two numerical methods. The first is based on an inverse iteration, where a norm of the solution is prescribed and the swirling parameter is calculated as a part of the output. The second is based on direct Newton iterations, where the linearized equations, for all the unknowns, are solved simultaneously by an efficient banded Gaussian elimination procedure. Several numerical solutions for inviscid and viscous flows are demonstrated, followed by a discussion of the results. Some improvements on previous work have been achieved: first order upwind differences are replaced by second order schemes, line relaxation procedure (with linear convergence rate) is replaced by Newton's iterations (which converge quadratically), and Reynolds numbers are extended from 200 up to 1000.

Can we Relate Basal Ice Mechanics to Seismic Observations of the Bed?

NASA Astrophysics Data System (ADS)

Kyrke-Smith, T.; Gudmundsson, G. H.; Farrell, P. E.

2017-12-01

We compare results from two different methods of quanitfying basal ice conditions, by investigating correlations between seismically-derived estimates of basal acoustic impedance and basal slipperiness values obtained from a surface-to-bed inversion of a Stokes ice flow model. Using high-resolution measurements taken along several seismic profiles on Pine Island Glacier (PIG), we find no correlation between acoustic impedance and retrieved basal slipperiness wihtin each individual profile. However, there is a correlation when comparing averaged values across each distinct profile. Nevertheless, there is no clear way of incorporating seismic measurements of bed properties on ice streams into ice flow models. We conclude that more theoretical work needs done before constraints on mechanical conditions at the ice-bed interface from acoustic impedance measurements can be of direct use to ice sheet models.

The effect of topography and rock type on soil cation contents and stream solute and phosphorus concentrations of streams in the southwestern Brazilian Amazon basin.

NASA Astrophysics Data System (ADS)

Biggs, T. W.; Dunne, T.; Holmes, K.; Martinelli, L. A.

2001-12-01

Topography plays an important role in determining soil properties, stream solute concentrations and landscape denudation rates. Stallard (1985) suggested that catchment denudation rates should depend on soil thickness. Areas with low slopes are limited by the rate of transport of sediment, and typically contain thick soils that prevent interaction of stream waters with underlying bedrock [Stallard 1985]. Steep areas typically have thin soils, but a lower hydrologic residence time that may prevent soil water from coming into thermodynamic equilibrium with the soil-rock complex. In a survey of streams in the Brazilian Amazon basin, Biggs et al. (2001) found that stream solute concentrations correlate with soil cation contents in the humid tropics, but the mechanism underlying the correlation has not been determined. We combine chemical analyses of water samples from ~40 different streams with soil surveys, geology maps, and a 100m resolution DEM to examine the relationship between topography, rock type, soil cation contents, and stream solute concentrations in the Brazilian Amazon state of Rondônia. The basins are all more than 60% forested at the time of stream sampling and lie on granite-gneiss rocks, tertiary sediments, or sandstone. The catchment-averaged slope correlates positively with both soil cation contents and stream concentrations of P, Na, Ca, Mg, K, Si, ANC, and pH. Though we have no data about the relationship between soil depth and average slope, we assume an inverse correlation, so the data demonstrates that thick soils yield lower solute concentrations. Stream concentrations of Ca, Mg, ANC and pH reach a maximum at intermediate average slopes (3 degrees), suggesting that denudation rates may increase with slope up to a maximum, when the catchment becomes limited by the weathering rate of the basement rock. Catchments on mica-schists or mafic rocks have low average slopes and higher concentrations of Ca, Mg, Si, ANC, and pH than catchments on granite-gneiss, tertiary sediments or sandstone.

Role of surface-water and groundwater interactions on projected summertime streamflow in snow dominated regions : An integrated modeling approach

USGS Publications Warehouse

Huntington, Justin L.; Niswonger, Richard G.

2012-01-01

Previous studies indicate predominantly increasing trends in precipitation across the Western United States, while at the same time, historical streamflow records indicate decreasing summertime streamflow and 25th percentile annual flows. These opposing trends could be viewed as paradoxical, given that several studies suggest that increased annual precipitation will equate to increased annual groundwater recharge, and therefore increased summertime flow. To gain insight on mechanisms behind these potential changes, we rely on a calibrated, integrated surface and groundwater model to simulate climate impacts on surface water/groundwater interactions using 12 general circulation model projections of temperature and precipitation from 2010 to 2100, and evaluate the interplay between snowmelt timing and other hydrologic variables, including streamflow, groundwater recharge, storage, groundwater discharge, and evapotranspiration. Hydrologic simulations show that the timing of peak groundwater discharge to the stream is inversely correlated to snowmelt runoff and groundwater recharge due to the bank storage effect and reversal of hydraulic gradients between the stream and underlying groundwater. That is, groundwater flow to streams peaks following the decrease in stream depth caused by snowmelt recession, and the shift in snowmelt causes a corresponding shift in groundwater discharge to streams. Our results show that groundwater discharge to streams is depleted during the summer due to earlier drainage of shallow aquifers adjacent to streams even if projected annual precipitation and groundwater recharge increases. These projected changes in surface water/groundwater interactions result in more than a 30% decrease in the projected ensemble summertime streamflow. Our findings clarify causality of observed decreasing summertime flow, highlight important aspects of potential climate change impacts on groundwater resources, and underscore the need for integrated hydrologic models in climate change studies.

Effect of Agricultural Practices on Hydrology and Water Chemistry in a Small Irrigated Catchment, Yakima River Basin, Washington

USGS Publications Warehouse

McCarthy, Kathleen A.; Johnson, Henry M.

2009-01-01

The role of irrigation and artificial drainage in the hydrologic cycle and the transport of solutes in a small agricultural catchment in central Washington's Yakima Valley were explored using hydrologic, chemical, isotopic, age-dating, and mineralogical data from several environmental compartments, including stream water, ground water, overland flow, and streambed pore water. A conceptual understanding of catchment hydrology and solute transport was developed and an inverse end-member mixing analysis was used to further explore the effects of agriculture in this small catchment. The median concentrations of major solutes and nitrates were similar for the single field site and for the catchment outflow site, indicating that the net effects of transport processes for these constituents were similar at both scales. However, concentrations of nutrients were different at the two sites, suggesting that field-scale variations in agricultural practices as well as nearstream and instream biochemical processes are important components of agricultural chemical transformation and transport in this catchment. This work indicates that irrigation coupled with artificial drainage networks may exacerbate the ecological effects of agricultural runoff by increasing direct connectivity between fields and streams and minimizing potentially mitigating effects (denitrification and dilution, for example) of longer subsurface pathways.

Nonlinear development and secondary instability of Gortler vortices in hypersonic flows

NASA Technical Reports Server (NTRS)

Fu, Yibin B.; Hall, Philip

1991-01-01

In a hypersonic boundary layer over a wall of variable curvature, the region most susceptible to Goertler vortices is the temperature adjustment layer over which the basic state temperature decreases monotonically to its free stream value. Except for a special wall curvature distribution, the evolution of Goertler vortices trapped in the temperature adjustment layer will in general be strongly affected by the boundary layer growth through the O(M sup 3/2) curvature of the basic state, where M is the free stream Mach number. Only when the local wavenumber becomes as large as of order M sup 3/8, do nonparallel effects become negligible in the determination of stability properties. In the latter case, Goertler vortices will be trapped in a thin layer of O(epsilon sup 1/2) thickness which is embedded in the temperature adjustment layer; here epsilon is the inverse of the local wavenumber. A weakly nonlinear theory is presented in which the initial nonlinear development of Goertler vortices in the neighborhood of the neutral position is studied and two coupled evolution equations are derived. From these, it can be determined whether the vortices are decaying or growing depending on the sign of a constant which is related to wall curvature and the basic state temperature.

Whole-stream metabolism of a perennial spring-fed aufeis field in Alaska, with coincident surface and subsurface flow

NASA Astrophysics Data System (ADS)

Hendrickson, P. J.; Gooseff, M. N.; Huryn, A. D.

2017-12-01

Aufeis (icings or naleds) are seasonal arctic and sub-arctic features that accumulate through repeated overflow and freeze events of river or spring discharge. Aufeis fields, defined as the substrate on which aufeis form and the overlaying ice, have been studied to mitigate impacts on engineering structures; however, ecological characteristics and functions of aufeis fields are poorly understood. The perennial springs that supply warm water to aufeis fields create unique fluvial habitats, and are thought to act as winter and summer oases for biota. To investigate ecosystem function, we measured whole-stream metabolism at the Kuparuk River Aufeis (North Slope, AK), a large ( 5 km2) field composed of cobble substrate and predominately subsurface flow dynamics. The single-station open channel diel oxygen method was utilized at several dissolved oxygen (DO) stations located within and downstream of the aufeis field. DO loggers were installed in August 2016, and data downloaded summer 2017. Daily ecosystem respiration (ER), gross primary production (GPP) and reaeration rates were modeled using BASE, a package freely available in the open-source software R. Preliminary results support net heterotrophy during a two-week period of DO measurements in the fall season when minimum ice extent is observed. GPP, ER, and net metabolism are greater at the upstream reach near the spring source (P/R = 0.53), and decrease as flow moves downstream. As flow exits the aufeis field, surface and subsurface flow are incorporated into the metabolism model, and indicate the stream system becomes dependent on autochthonous production (P/R = 0.91). Current work is directed towards spring and summer discharge and metabolic parameter estimation, which is associated with maximum ice extent and rapid melting of the aufeis feature.

Development of low cost, high reliability sealing techniques for hybrid microcircuit packages. Phase 2, supplement 1: Moisture permeation of adhesive-sealed hybrid microcircuit packages

NASA Technical Reports Server (NTRS)

Perkins, K. L.; Licari, J. J.

1978-01-01

The susceptibility of adhesive-sealed ceramic packages to moisture permeation was investigated. The two adhesives, Ablebond 789-1 and Epo-Tek H77, were evaluated as package sealants. These adhesives were previously selected as the most promising candidates for this application from a group of ten adhesives. Ceramic packages sealed with these adhesives were exposed to temperature-humidity conditions of 25 C/98 percent RH, 50 C/60 percent RH, 50 C/98 percent RH, and 85 C/85 percent RH and their moisture contents using were monitored solid state moisture sensors sealed inside them. Five packages were tested at each of these exposures - two ceramic packages sealed with each of the two adhesives and one seam-sealed gold-plated Kovar package. This latter package was included to serve as a control. The results showed that the adhesive-sealed packages were not hermetic to moisture. The rates at which moisture entered the packages increased with the severity of the exposure environments (i.e., higher temperatures and higher moisture vapor pressures) with greater dependence on temperature than on moisture vapor pressure.

Community-based intervention packages for reducing maternal and neonatal morbidity and mortality and improving neonatal outcomes.

PubMed

Lassi, Zohra S; Haider, Batool A; Bhutta, Zulfiqar A

2010-11-10

While maternal, infant and under-five child mortality rates in developing countries have declined significantly in the past two to three decades, newborn mortality rates have reduced much more slowly. While it is recognised that almost half of the newborn deaths can be prevented by scaling up evidence-based available interventions such as tetanus toxoid immunisation to mothers; clean and skilled care at delivery; newborn resuscitation; exclusive breastfeeding; clean umbilical cord care; management of infections in newborns, many require facility based and outreach services. It has also been stated that a significant proportion of these mortalities and morbidities could also be potentially addressed by developing community-based packages interventions which should also be supplemented by developing and strengthening linkages with the local health systems. Some of the recent community-based studies of interventions targeting women of reproductive age have shown variable impacts on maternal outcomes and hence it is uncertain if these strategies have consistent benefit across the continuum of maternal and newborn care. To assess the effectiveness of community-based intervention packages in reducing maternal and neonatal morbidity and mortality; and improving neonatal outcomes. We searched The Cochrane Pregnancy and Childbirth Group's Trials Register (January 2010), World Bank's JOLIS (12 January 2010), BLDS at IDS and IDEAS database of unpublished working papers (12 January 2010), Google and Google Scholar (12 January 2010). All prospective randomised and quasi-experimental trials evaluating the effectiveness of community-based intervention packages in reducing maternal and neonatal mortality and morbidities; and improving neonatal outcomes. Two review authors independently assessed trial quality and extracted the data. The review included 18 cluster-randomised/quasi-randomised trials, covering a wide range of interventional packages, including two subsets from one trial. We incorporated data from these trials using generic inverse variance method in which logarithms of risk ratio estimates were used along with the standard error of the logarithms of risk ratio estimates. Our review did not show any reduction in maternal mortality (risk ratio (RR) 0.77; 95% confidence interval (CI) 0.59 to 1.02, random-effects (10 studies, n = 144,956), I² 39%, P value 0.10. However, significant reduction was observed in maternal morbidity (RR 0.75; 95% CI 0.61 to 0.92, random-effects (four studies, n = 138,290), I² 28%; neonatal mortality (RR 0.76; 95% CI 0.68 to 0.84, random-effects (12 studies, n = 136,425), I² 69%, P value < 0.001), stillbirths (RR 0.84; 95% CI 0.74 to 0.97, random-effects (11studies, n = 113,821), I² 66%, P value 0.001) and perinatal mortality (RR 0.80; 95% CI 0.71 to 0.91, random-effects (10 studies, n = 110,291), I² 82%, P value < 0.001) as a consequence of implementation of community-based interventional care packages. It also increased the referrals to health facility for pregnancy related complication by 40% (RR 1.40; 95% CI 1.19 to 1.65, fixed-effect (two studies, n = 22,800), I² 0%, P value 0.76), and improved the rates of early breastfeeding by 94% (RR 1.94; 95% CI 1.56 to 2.42, random-effects (six studies, n = 20,627), I² 97%, P value < 0.001). We assessed our primary outcomes for publication bias, but observed no such asymmetry on the funnel plot. Our review offers encouraging evidence of the value of integrating maternal and newborn care in community settings through a range of interventions which can be packaged effectively for delivery through a range of community health workers and health promotion groups. While the importance of skilled delivery and facility-based services for maternal and newborn care cannot be denied, there is sufficient evidence to scale up community-based care through packages which can be delivered by a range of community-based workers.

Dual-stream modulation failure: a novel hypothesis for the formation and maintenance of delusions in schizophrenia.

PubMed

Speechley, William J; Ngan, Elton T C

2008-01-01

Delusions, a cardinal feature of schizophrenia, are characterized by the development and preservation of false beliefs despite reason and evidence to the contrary. A number of cognitive models have made important contributions to our understanding of delusions, though it remains unclear which core cognitive processes are malfunctioning to enable individuals with delusions to form and maintain erroneous beliefs. We propose a modified dual-stream processing model that provides a viable and testable mechanism that can account for this debilitating symptom. Dual-stream models divide decision-making into two streams: a fast, intuitive and automatic form of processing (Stream 1); and a slower, conscious and deliberative process (Stream 2). Our novel model proposes two key influences on the way these streams interact in everyday decision-making: conflict and emotion. Conflict: in most decision-making scenarios one obvious answer presents itself and the two streams converge onto the same conclusion. However, in instances where there are competing alternative possibilities, an individual often experiences dissonance, or a sense of conflict. The detection of this conflict biases processing towards the more deliberative Stream 2. Emotion: highly emotional states can result in behavior that is reflexive and action-oriented. This may be due to the power of emotionally valenced stimuli to bias reasoning towards Stream 1. We propose that in schizophrenia, an abnormal response to these two influences results in a pathological schism between Stream 1 and Stream 2, enabling erroneous intuitive explanations to coexist with contrary logical explanations of the same event. Specifically, we suggest that delusions are the result of a failure to reconcile the two streams due to both a failure of conflict to bias decision-making towards Stream 2 and an accentuated emotional bias towards Stream 1.

Time-marching multi-grid seismic tomography

NASA Astrophysics Data System (ADS)

Tong, P.; Yang, D.; Liu, Q.

2016-12-01

From the classic ray-based traveltime tomography to the state-of-the-art full waveform inversion, because of the nonlinearity of seismic inverse problems, a good starting model is essential for preventing the convergence of the objective function toward local minima. With a focus on building high-accuracy starting models, we propose the so-called time-marching multi-grid seismic tomography method in this study. The new seismic tomography scheme consists of a temporal time-marching approach and a spatial multi-grid strategy. We first divide the recording period of seismic data into a series of time windows. Sequentially, the subsurface properties in each time window are iteratively updated starting from the final model of the previous time window. There are at least two advantages of the time-marching approach: (1) the information included in the seismic data of previous time windows has been explored to build the starting models of later time windows; (2) seismic data of later time windows could provide extra information to refine the subsurface images. Within each time window, we use a multi-grid method to decompose the scale of the inverse problem. Specifically, the unknowns of the inverse problem are sampled on a coarse mesh to capture the macro-scale structure of the subsurface at the beginning. Because of the low dimensionality, it is much easier to reach the global minimum on a coarse mesh. After that, finer meshes are introduced to recover the micro-scale properties. That is to say, the subsurface model is iteratively updated on multi-grid in every time window. We expect that high-accuracy starting models should be generated for the second and later time windows. We will test this time-marching multi-grid method by using our newly developed eikonal-based traveltime tomography software package tomoQuake. Real application results in the 2016 Kumamoto earthquake (Mw 7.0) region in Japan will be demonstrated.

gr-MRI: A software package for magnetic resonance imaging using software defined radios

NASA Astrophysics Data System (ADS)

Hasselwander, Christopher J.; Cao, Zhipeng; Grissom, William A.

2016-09-01

The goal of this work is to develop software that enables the rapid implementation of custom MRI spectrometers using commercially-available software defined radios (SDRs). The developed gr-MRI software package comprises a set of Python scripts, flowgraphs, and signal generation and recording blocks for GNU Radio, an open-source SDR software package that is widely used in communications research. gr-MRI implements basic event sequencing functionality, and tools for system calibrations, multi-radio synchronization, and MR signal processing and image reconstruction. It includes four pulse sequences: a single-pulse sequence to record free induction signals, a gradient-recalled echo imaging sequence, a spin echo imaging sequence, and an inversion recovery spin echo imaging sequence. The sequences were used to perform phantom imaging scans with a 0.5 Tesla tabletop MRI scanner and two commercially-available SDRs. One SDR was used for RF excitation and reception, and the other for gradient pulse generation. The total SDR hardware cost was approximately 2000. The frequency of radio desynchronization events and the frequency with which the software recovered from those events was also measured, and the SDR's ability to generate frequency-swept RF waveforms was validated and compared to the scanner's commercial spectrometer. The spin echo images geometrically matched those acquired using the commercial spectrometer, with no unexpected distortions. Desynchronization events were more likely to occur at the very beginning of an imaging scan, but were nearly eliminated if the user invoked the sequence for a short period before beginning data recording. The SDR produced a 500 kHz bandwidth frequency-swept pulse with high fidelity, while the commercial spectrometer produced a waveform with large frequency spike errors. In conclusion, the developed gr-MRI software can be used to develop high-fidelity, low-cost custom MRI spectrometers using commercially-available SDRs.

Next-generation acceleration and code optimization for light transport in turbid media using GPUs

PubMed Central

Alerstam, Erik; Lo, William Chun Yip; Han, Tianyi David; Rose, Jonathan; Andersson-Engels, Stefan; Lilge, Lothar

2010-01-01

A highly optimized Monte Carlo (MC) code package for simulating light transport is developed on the latest graphics processing unit (GPU) built for general-purpose computing from NVIDIA - the Fermi GPU. In biomedical optics, the MC method is the gold standard approach for simulating light transport in biological tissue, both due to its accuracy and its flexibility in modelling realistic, heterogeneous tissue geometry in 3-D. However, the widespread use of MC simulations in inverse problems, such as treatment planning for PDT, is limited by their long computation time. Despite its parallel nature, optimizing MC code on the GPU has been shown to be a challenge, particularly when the sharing of simulation result matrices among many parallel threads demands the frequent use of atomic instructions to access the slow GPU global memory. This paper proposes an optimization scheme that utilizes the fast shared memory to resolve the performance bottleneck caused by atomic access, and discusses numerous other optimization techniques needed to harness the full potential of the GPU. Using these techniques, a widely accepted MC code package in biophotonics, called MCML, was successfully accelerated on a Fermi GPU by approximately 600x compared to a state-of-the-art Intel Core i7 CPU. A skin model consisting of 7 layers was used as the standard simulation geometry. To demonstrate the possibility of GPU cluster computing, the same GPU code was executed on four GPUs, showing a linear improvement in performance with an increasing number of GPUs. The GPU-based MCML code package, named GPU-MCML, is compatible with a wide range of graphics cards and is released as an open-source software in two versions: an optimized version tuned for high performance and a simplified version for beginners (http://code.google.com/p/gpumcml). PMID:21258498

Interpolating of climate data using R

NASA Astrophysics Data System (ADS)

Reinhardt, Katja

2017-04-01

Interpolation methods are used in many different geoscientific areas, such as soil physics, climatology and meteorology. Thereby, unknown values are calculated by using statistical calculation approaches applied on known values. So far, the majority of climatologists have been using computer languages, such as FORTRAN or C++, but there is also an increasing number of climate scientists using R for data processing and visualization. Most of them, however, are still working with arrays and vector based data which is often associated with complex R code structures. For the presented study, I have decided to convert the climate data into geodata and to perform the whole data processing using the raster package, gstat and similar packages, providing a much more comfortable way for data handling. A central goal of my approach is to create an easy to use, powerful and fast R script, implementing the entire geodata processing and visualization into a single and fully automated R based procedure, which allows avoiding the necessity of using other software packages, such as ArcGIS or QGIS. Thus, large amount of data with recurrent process sequences can be processed. The aim of the presented study, which is located in western Central Asia, is to interpolate wind data based on the European reanalysis data Era-Interim, which are available as raster data with a resolution of 0.75˚ x 0.75˚ , to a finer grid. Therefore, various interpolation methods are used: inverse distance weighting, the geostatistical methods ordinary kriging and regression kriging, generalized additve model and the machine learning algorithms support vector machine and neural networks. Besides the first two mentioned methods, the methods are used with influencing factors, e.g. geopotential and topography.

Potential for 4-n-nonylphenol biodegradation in stream sediments

USGS Publications Warehouse

Bradley, P.M.; Barber, L.B.; Kolpin, D.W.; McMahon, P.B.; Chapelle, F.H.

2008-01-01

The potential for in situ biodegradation of 4-nonylphenol (4-NP) was investigated in three hydrologically distinct streams impacted by wastewater treatment plants (WWTPs) in the United States. Microcosms were prepared with sediments from each site and amended with [U-ring-14C]4-n-nonylphenol (4-n-NP) as a model test substrate. Microcosms prepared with sediment collected upstream of the WWTP outfalls and incubated under oxic conditions showed rapid and complete mineralization of [U-ring-14C]4- n-NP to 14CO2 in all three systems. In contrast, no mineralization of [U-ring-14C]4-n-NP was observed in these sediments under anoxic (methanogenic) conditions. The initial linear rate of [U-ring-14C]4-n-NP mineralization in sediments from upstream and downstream of the respective WWTP outfalls was inversely correlated with the biochemical oxygen demand (BOD) of the streambed sediments. These results suggest that the net supply of dissolved oxygen to streambed sediments is a key determinant of the rate and extent of 4-NP biodegradation in stream systems. In the stream systems considered by the present study, dissolved oxygen concentrations in the overlying water column (8–10 mg/L) and in the bed sediment pore water (1–3 mg/L at a depth of 10 cm below the sediment–water interface) were consistent with active in situ 4-NP biodegradation. These results suggest WWTP procedures that maximize the delivery of dissolved oxygen while minimizing the release of BOD to stream receptors favor efficient biodegradation of 4-NP contaminants in wastewater-impacted stream environments.

On the cross-stream spectral method for the Orr-Sommerfeld equation

NASA Technical Reports Server (NTRS)

Zorumski, William E.; Hodge, Steven L.

1993-01-01

Cross-stream models are defined as solutions to the Orr-Sommerfeld equation which are propagating normal to the flow direction. These models are utilized as a basis for a Hilbert space to approximate the spectrum of the Orr-Sommerfeld equation with plane Poiseuille flow. The cross-stream basis leads to a standard eigenvalue problem for the frequencies of Poiseuille flow instability waves. The coefficient matrix in the eigenvalue problem is shown to be the sum of a real matrix and a negative-imaginary diagonal matrix which represents the frequencies of the cross-stream modes. The real coefficient matrix is shown to approach a Toeplitz matrix when the row and column indices are large. The Toeplitz matrix is diagonally dominant, and the diagonal elements vary inversely in magnitude with diagonal position. The Poiseuille flow eigenvalues are shown to lie within Gersgorin disks with radii bounded by the product of the average flow speed and the axial wavenumber. It is shown that the eigenvalues approach the Gersgorin disk centers when the mode index is large, so that the method may be used to compute spectra with an essentially unlimited number of elements. When the mode index is large, the real part of the eigenvalue is the product of the axial wavenumber and the average flow speed, and the imaginary part of the eigen value is identical to the corresponding cross-stream mode frequency. The cross-stream method is numerically well-conditioned in comparison to Chebyshev based methods, providing equivalent accuracy for small mode indices and superior accuracy for large indices.

Temporal and spatial patterns of wetland extent influence variability of surface water connectivity in the Prairie Pothole Region, United States

USGS Publications Warehouse

Vanderhoof, Melanie; Alexander, Laurie C.; Todd, Jason

2016-01-01

Context. Quantifying variability in landscape-scale surface water connectivity can help improve our understanding of the multiple effects of wetlands on downstream waterways. Objectives. We examined how wetland merging and the coalescence of wetlands with streams varied both spatially (among ecoregions) and interannually (from drought to deluge) across parts of the Prairie Pothole Region. Methods. Wetland extent was derived over a time series (1990-2011) using Landsat imagery. Changes in landscape-scale connectivity, generated by the physical coalescence of wetlands with other surface water features, were quantified by fusing static wetland and stream datasets with Landsat-derived wetland extent maps, and related to multiple wetness indices. The usage of Landsat allows for decadal-scale analysis, but limits the types of surface water connections that can be detected. Results. Wetland extent correlated positively with the merging of wetlands and wetlands with streams. Wetness conditions, as defined by drought indices and runoff, were positively correlated with wetland extent, but less consistently correlated with measures of surface water connectivity. The degree of wetland-wetland merging was found to depend less on total wetland area or density, and more on climate conditions, as well as the threshold for how wetland/upland was defined. In contrast, the merging of wetlands with streams was positively correlated with stream density, and inversely related to wetland density. Conclusions. Characterizing the degree of surface water connectivity within the Prairie Pothole Region in North America requires consideration of 1) climate-driven variation in wetness conditions and 2) within-region variation in wetland and stream spatial arrangements.

Development of a Miniaturized and Portable Methane Analyzer for Natural Gas Leak Walking Surveys

NASA Astrophysics Data System (ADS)

Huang, Y. W.; Leen, J. B.; Gupta, M.; Baer, D. S.

2016-12-01

Traditional natural gas leak walking surveys have been conducted with devices that are based on technologies such as flame ionization detector (FID), IR-based spectrometer and IR camera. The sensitivity is typically on the ppm level. The low sensitivity means the device cannot pick up leaks far from it, and more time is spent surveying the area before pinpointing the leak location. A miniaturized methane analyzer has been developed to significantly improve the sensitivity of the device used in walking surveys to detect natural gas leaks at greater distance. ABB/LGR's patented Off-Axis Integrated Cavity Output Spectroscopy (OA-ICOS) is utilized to offer rugged and highly sensitive methane detection in a portable package. The miniaturized package weighs 13.5 lb, with a 4-hour rechargeable battery inside. The precision of the analyzer for methane is 2 ppb at 1 second. The analyzer operates at 10 Hz and its flow response time is 3 seconds for measurements through a 1-meter long sampling wand to registering on the data stream. The data can be viewed in real-time on a tablet or a smartphone. The compact and simplified package of the methane analyzer allows for more efficient walking surveys. It also allows for other applications that require low-power, low-weight and a portable package. We present data from walking surveys to demonstrate its ability to detect methane leaks.

49 CFR 178.905 - Large Packaging identification codes.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 49 Transportation 2 2010-10-01 2010-10-01 false Large Packaging identification codes. 178.905... FOR PACKAGINGS Large Packagings Standards § 178.905 Large Packaging identification codes. Large packaging code designations consist of: two numerals specified in paragraph (a) of this section; followed by...

How Does Decommissioning Forest Roads Effect Hydrologic and Geomorphic Risk?

NASA Astrophysics Data System (ADS)

Black, T.; Luce, C.; Cissel, R. M.; Nelson, N.; Staab, B.

2010-12-01

The US Forest Service is investigating road decommissioning projects to understand how treatments change hydrologic and geomorphic risks. Road treatment effect was measured using a before after control impact design (BACI), using the Geomorphic Road Analysis and Inventory Package (http://www.fs.fed.us/GRAIP). This suite of inventory and analysis tools evaluates: road-stream hydrologic connectivity, fine sediment production and delivery, shallow landslide risk, gully initiation risk, and risks associated with stream crossing failures. The Skokomish River study site is steep and wet and received a high intensity treatment including the removal of stream crossing pipes and fills, all ditch relief pipes and a full hillslope recontouring. Road to stream hydrologic connectivity was reduced by 70%. The treatments reduced fine sediment delivery by 21.8 tons or 81%. The removal of the stream crossing culverts and large associated road fills eliminated the risk of pipe plugging related failures and the eventual erosion of over 4,000 m3 of fill. The slope stability risk was assessed using a modified version of SINMAP (Pack et al, 2005). Risk below drain point locations on the original road was reduced as water was redistributed across the hillslope to waterbars and diffuse drainage. It is unclear; however, if landslide risk was reduced across the entire treated road length because treatments slightly increased risk in some areas where new concentrated drainage features were added above steep slopes. Similarly, values of a gully index ESI (Istanbulluoglu et al, 2003), were reduced at many of the original drainage points, however some new drainage was added. ESI values still exceed a predicted conservative initiation thresholds at some sites, therefore it is uncertain if gully risk will be changed. Mann Creek occupies a moderately steep mid-elevation site in Southern Idaho. The high intensity treatments removed all constructed road drainage features including stream crossing pipes and fills, and recontoured the hillslope. The length of road that was hydrologically connected to streams was reduced by 2,923 m, or 97%. The model predicts that fine sediment delivery was reduced by 98%, to 1.0 ton annually. The risk presented by stream crossings becoming plugged was eliminated. The potential for streamflow diversion onto roads and hillslopes was precluded. The slope stability risk below drain point locations on the original road was reduced as water was no longer concentrated and discharged through a single drainage feature. Treatments are predicted to return slope stability to near undisturbed levels. Gully initiation risks, already low prior to treatment, may be reduced to negligible values. Results from these two case studies suggest that high intensity road decommissioning can be effective at reducing the risk of road sediment delivery, hydrologic connectivity and failures associated with stream crossings. Post storm monitoring will help validate these predictions and reduce uncertainty around the hydrology of decommissioned roads. If decommissioned roads continue to concentrate water and discharge it onto steep slopes, landslides and gully risk may remain elevated.

Regression analysis of clustered failure time data with informative cluster size under the additive transformation models.

PubMed

Chen, Ling; Feng, Yanqin; Sun, Jianguo

2017-10-01

This paper discusses regression analysis of clustered failure time data, which occur when the failure times of interest are collected from clusters. In particular, we consider the situation where the correlated failure times of interest may be related to cluster sizes. For inference, we present two estimation procedures, the weighted estimating equation-based method and the within-cluster resampling-based method, when the correlated failure times of interest arise from a class of additive transformation models. The former makes use of the inverse of cluster sizes as weights in the estimating equations, while the latter can be easily implemented by using the existing software packages for right-censored failure time data. An extensive simulation study is conducted and indicates that the proposed approaches work well in both the situations with and without informative cluster size. They are applied to a dental study that motivated this study.

Model Package Report: Hanford Soil Inventory Model SIM v.2 Build 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nichols, Will E.; Zaher, U.; Mehta, S.

The Hanford Soil Inventory Model (SIM) is a tool for the estimation of inventory of contaminants that were released to soil from liquid discharges during the U.S. Department of Energy’s Hanford Site operations. This model package report documents the construction and development of a second version of SIM (SIM-v2) to support the needs of Hanford Site Composite Analysis. The SIM-v2 is implemented using GoldSim Pro®1 software with a new model architecture that preserves the uncertainty in inventory estimates while reducing the computational burden (compared to the previous version) and allowing more traceability and transparency in calculation methodology. The calculation architecturemore » is designed in such a manner that future updates to the waste stream composition along with addition or deletion of waste sites can be performed with relative ease. In addition, the new computational platform allows for continued hardware upgrade.« less

Yet Another Stream Search Among 2401 Photographic Meteors

NASA Technical Reports Server (NTRS)

Cook, A. F., II; Lindblad, B.; Marsden, B. G.; Mccrosky, R. E.; Posen, A.

1973-01-01

Two streams previously listed (one of them with a classification on Ceplecha's system in terms of beginning height) by Cook are shown probably not to exist, a possibility already pointed out by Cook. One stream that he questioned was revised as to membership and then classified. Four streams are added to the list and one of these is classified. Previous reports exist for three of these streams, while one is new. The two Piscid streams of Lindblad and his alpha Triangulid stream are regrouped into two streams, one already called the Andromedids by Cook and the other still called the Piscids; the alpha Triangulids are absorbed into the Andromedids. The Piscids are classified along with the iota Aquarids. The classifications of the Taurids and the Andromedids remain unchanged.

High coherence plane breaking packaging for superconducting qubits.

PubMed

Bronn, Nicholas T; Adiga, Vivekananda P; Olivadese, Salvatore B; Wu, Xian; Chow, Jerry M; Pappas, David P

2018-04-01

We demonstrate a pogo pin package for a superconducting quantum processor specifically designed with a nontrivial layout topology (e.g., a center qubit that cannot be accessed from the sides of the chip). Two experiments on two nominally identical superconducting quantum processors in pogo packages, which use commercially available parts and require modest machining tolerances, are performed at low temperature (10 mK) in a dilution refrigerator and both found to behave comparably to processors in standard planar packages with wirebonds where control and readout signals come in from the edges. Single- and two-qubit gate errors are also characterized via randomized benchmarking, exhibiting similar error rates as in standard packages, opening the possibility of integrating pogo pin packaging with extensible qubit architectures.

High coherence plane breaking packaging for superconducting qubits

NASA Astrophysics Data System (ADS)

Bronn, Nicholas T.; Adiga, Vivekananda P.; Olivadese, Salvatore B.; Wu, Xian; Chow, Jerry M.; Pappas, David P.

2018-04-01

We demonstrate a pogo pin package for a superconducting quantum processor specifically designed with a nontrivial layout topology (e.g., a center qubit that cannot be accessed from the sides of the chip). Two experiments on two nominally identical superconducting quantum processors in pogo packages, which use commercially available parts and require modest machining tolerances, are performed at low temperature (10 mK) in a dilution refrigerator and both found to behave comparably to processors in standard planar packages with wirebonds where control and readout signals come in from the edges. Single- and two-qubit gate errors are also characterized via randomized benchmarking, exhibiting similar error rates as in standard packages, opening the possibility of integrating pogo pin packaging with extensible qubit architectures.

The role of event water, a rapid shallow flow component, and catchment size in summer stormflow

USGS Publications Warehouse

Brown, V.A.; McDonnell, Jeffery J.; Burns, Douglas A.; Kendall, C.

1999-01-01

Seven nested headwater catchments (8 to 161 ha) were monitored during five summer rain events to evaluate storm runoff components and the effect of catchment size on water sources. Two-component isotopic hydrograph separation showed that event-water contributions near the time of peakflow ranged from 49% to 62% in the 7 catchments during the highest intensity event. The proportion of event water in stormflow was greater than could be accounted for by direct precipitation onto saturated areas. DOC concentrations in stormflow were strongly correlated with stream 18O composition. Bivariate mixing diagrams indicated that the large event water contributions were likely derived from flow through the soil O-horizon. Results from two-tracer, three-component hydrograph separations showed that the throughfall and O-horizon soil-water components together could account for the estimated contributions of event water to stormflow. End-member mixing analysis confirmed these results. Estimated event-water contributions were inversely related to catchment size, but the relation was significant for only the event with greatest rainfall intensity. Our results suggest that perched, shallow subsurface flow provides a substantial contribution to summer stormflow in these small catchments, but the relative contribution of this component decreases with catchment size.Seven nested headwater catchments (8 to 161 ha) were monitored during five summer rain events to evaluate storm runoff components and the effect of catchment size on water sources. Two-component isotopic hydrograph separation showed that event-water contributions near the time of peakflow ranged from 49% to 62% in the 7 catchments during the highest intensity event. The proportion of event water in stormflow was greater than could be accounted for by direct precipitation onto saturated areas. DOC concentrations in stormflow were strongly correlated with stream 18O composition. Bivariate mixing diagrams indicated that the large event water contributions were likely derived from flow through the soil O-horizon. Results from two-tracer, three-component hydrograph separations showed that the throughfall and O-horizon soil-water components together could account for the estimated contributions of event water to stormflow. End-member mixing analysis confirmed these results. Estimated event-water contributions were inversely related to catchment size, but the relation was significant for only the event with greatest rainfall intensity. Our results suggest that perched, shallow subsurface flow provides a substantial contribution to summer stormflow in these small catchments, but the relative contribution of this component decreases with catchment size.

Structural constraints in the packaging of bluetongue virus genomic segments

PubMed Central

Burkhardt, Christiane; Sung, Po-Yu; Celma, Cristina C.

2014-01-01

The mechanism used by bluetongue virus (BTV) to ensure the sorting and packaging of its 10 genomic segments is still poorly understood. In this study, we investigated the packaging constraints for two BTV genomic segments from two different serotypes. Segment 4 (S4) of BTV serotype 9 was mutated sequentially and packaging of mutant ssRNAs was investigated by two newly developed RNA packaging assay systems, one in vivo and the other in vitro. Modelling of the mutated ssRNA followed by biochemical data analysis suggested that a conformational motif formed by interaction of the 5′ and 3′ ends of the molecule was necessary and sufficient for packaging. A similar structural signal was also identified in S8 of BTV serotype 1. Furthermore, the same conformational analysis of secondary structures for positive-sense ssRNAs was used to generate a chimeric segment that maintained the putative packaging motif but contained unrelated internal sequences. This chimeric segment was packaged successfully, confirming that the motif identified directs the correct packaging of the segment. PMID:24980574

Quantifying effects of humans and climate on groundwater resources of Hawaii through sharp-interface modeling

NASA Astrophysics Data System (ADS)

Rotzoll, K.; Izuka, S. K.; Nishikawa, T.; Fienen, M. N.; El-Kadi, A. I.

2016-12-01

Some of the volcanic-rock aquifers of the islands of Hawaii are substantially developed, leading to concerns related to the effects of groundwater withdrawals on saltwater intrusion and stream base-flow reduction. A numerical modeling analysis using recent available information (e.g., recharge, withdrawals, hydrogeologic framework, and conceptual models of groundwater flow) advances current understanding of groundwater flow and provides insight into the effects of human activity and climate change on Hawaii's water resources. Three island-wide groundwater-flow models (Kauai, Oahu, and Maui) were constructed using MODFLOW 2005 coupled with the Seawater-Intrusion Package (SWI2), which simulates the transition between saltwater and freshwater in the aquifer as a sharp interface. This approach allowed coarse vertical discretization (maximum of two layers) without ignoring the freshwater-saltwater system at the regional scale. Model construction (FloPy3), parameter estimation (PEST), and analysis of results were streamlined using Python scripts. Model simulations included pre-development (1870) and recent (average of 2001-10) scenarios for each island. Additionally, scenarios for future withdrawals and climate change were simulated for Oahu. We present our streamlined approach and results showing estimated effects of human activity on the groundwater resource by quantifying decline in water levels, rise of the freshwater-saltwater interface, and reduction in stream base flow. Water-resource managers can use this information to evaluate consequences of groundwater development that can constrain future groundwater availability.

Hydrology of Channelized and Natural Headwater Streams

USDA-ARS?s Scientific Manuscript database

Understanding hydrology is paramount for optimal ecologic function and management of headwater streams. The objective of this study was to characterize and compare headwater streams within the Upper Big Walnut Creek watershed in Ohio. Two channelized and two unchannelized streams were instrumented w...

Implementation of lean manufacturing for frozen fish process at PT. XYZ

NASA Astrophysics Data System (ADS)

Setiyawan, D. T.; Pertiwijaya, H. R.; Effendi, U.

2018-03-01

PT. XYZ is a company specialized in the processing of fishery products particularly in frozen fish fillet. The purpose of this research was to identify the type of waste and determine the recommendations of minimizing waste Lean manufacturing approach was used in the identification of waste by describing the Value Stream Mapping (VSM) and selecting tools in the Value Stream Analysis Tools (VALSAT). The results of this research showed that the highest waste that generated was the defect of leak packaging on fillet products with an average of 1.21%. In addition to defect, other insufficiencies were found such as: unnecessary motion, unnecessary overhead, and waiting time. Recommendations for improvements that given include reduction of time at several stages of the process, making production schedules, and conducting regular machine maintenance. VSM analysis shows reduced lead time of 582.04 minutes to 572.01 minutes.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Singledecker, Steven John

The purpose of this document is to describe the waste stream from Z-Pinch Residual Waste Project that due to worker safety concerns and operational efficiency is a candidate for blending Transuranic and low level waste together and can be safely packaged as low-level waste consistent with DOE Order 435.1 requirements and NRC guidance 10 CFR 61.42. This waste stream consists of the Pu-ICE post-shot containment systems, including plutonium targets, generated from the Z Machine experiments requested by LANL and conducted by SNL/NM. In the past, this TRU waste was shipped back to LANL after Sandia sends the TRU data packagemore » to LANL to certify the characterization (by CCP), transport and disposition at WIPP (CBFO) per LANL MOU-0066. The Low Level Waste is managed, characterized, shipped and disposed of at NNSS by SNL/NM per Sandia MOU # 11-S-560.« less

Accidental Turbulent Discharge Rate Estimation from Videos

NASA Astrophysics Data System (ADS)

Ibarra, Eric; Shaffer, Franklin; Savaş, Ömer

2015-11-01

A technique to estimate the volumetric discharge rate in accidental oil releases using high speed video streams is described. The essence of the method is similar to PIV processing, however the cross correlation is carried out on the visible features of the efflux, which are usually turbulent, opaque and immiscible. The key step in the process is to perform a pixelwise time filtering on the video stream, in which the parameters are commensurate with the scales of the large eddies. The velocity field extracted from the shell of visible features is then used to construct an approximate velocity profile within the discharge. The technique has been tested on laboratory experiments using both water and oil jets at Re ~105 . The technique is accurate to 20%, which is sufficient for initial responders to deploy adequate resources for containment. The software package requires minimal user input and is intended for deployment on an ROV in the field. Supported by DOI via NETL.

Mercury in stream water at five Czech catchments across a Hg and S deposition gradient

USGS Publications Warehouse

Navrátil, Tomáš; Shanley, James B.; Rohovec, Jan; Oulehle, Filip; Krám, Pavel; Matoušková, Šárka; Tesař, Miroslav; Hojdová, Maria

2015-01-01

The Czech Republic was heavily industrialized in the second half of the 20th century but the associated emissions of Hg and S from coal burning were significantly reduced since the 1990s. We studied dissolved (filtered) stream water mercury (Hg) and dissolved organic carbon (DOC) concentrations at five catchments with contrasting Hg and S deposition histories in the Bohemian part of the Czech Republic. The median filtered Hg concentrations of stream water samples collected in hydrological years 2012 and 2013 from the five sites varied by an order of magnitude from 1.3 to 18.0 ng L− 1. The Hg concentrations at individual catchments were strongly correlated with DOC concentrations r from 0.64 to 0.93 and with discharge r from 0.48 to 0.75. Annual export fluxes of filtered Hg from individual catchments ranged from 0.11 to 13.3 μg m− 2 yr− 1 and were highest at sites with the highest DOC export fluxes. However, the amount of Hg exported per unit DOC varied widely; the mean Hg/DOC ratio in stream water at the individual sites ranged from 0.28 to 0.90 ng mg− 1. The highest stream Hg/DOC ratios occurred at sites Pluhův Bor and Jezeří which both are in the heavily polluted Black Triangle area. Stream Hg/DOC was inversely related to mineral and total soil pool Hg/C across the five sites. We explain this pattern by greater soil Hg retention due to inhibition of soil organic matter decomposition at the sites with low stream Hg/DOC and/or by precipitation of a metacinnabar (HgS) phase. Thus mobilization of Hg into streams from forest soils likely depends on combined effects of organic matter decomposition dynamics and HgS-like phase precipitation, which were both affected by Hg and S deposition histories.

The R-package eseis - A toolbox to weld geomorphic, seismologic, spatial, and time series analysis

NASA Astrophysics Data System (ADS)

Dietze, Michael

2017-04-01

Environmental seismology is the science of investigating the seismic signals that are emitted by Earth surface processes. This emerging field provides unique opportunities to identify, locate, track and inspect a wide range of the processes that shape our planet. Modern broadband seismometers are sensitive enough to detect signals from sources as weak as wind interacting with the ground and as powerful as collapsing mountains. This places the field of environmental seismology at the seams of many geoscientific disciplines and requires integration of a series of specialised analysis techniques. R provides the perfect environment for this challenge. The package eseis uses the foundations laid by a series of existing packages and data types tailored to solve specialised problems (e.g., signal, sp, rgdal, Rcpp, matrixStats) and thus provides access to efficiently handling large streams of seismic data (> 300 million samples per station and day). It supports standard data formats (mseed, sac), preparation techniques (deconvolution, filtering, rotation), processing methods (spectra, spectrograms, event picking, migration for localisation) and data visualisation. Thus, eseis provides a seamless approach to the entire workflow of environmental seismology and passes the output to related analysis fields with temporal, spatial and modelling focus in R.

77 FR 3386 - Export and Reexport License Requirements for Certain Microwave and Millimeter Wave Electronic...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-01-24

... electronic components. The two components are packaged high electron mobility transistors and packaged..., 2012, FR Doc. 2012- 135). The two components are packaged high electron mobility transistors (HEMT) and...

Recovery of Phytophthora species from drainage points and tributaries within two forest stream networks: a preliminary report

Treesearch

J. Hwang; S.W. Oak; S.N. Jeffers

2011-01-01

To evaluate the number of stream sample sites needed to effectively survey a given stream network for species of Phytophthora, two stream networks, Davidson River and Cathey's Creek, in western North Carolina (USA) were studied. One-litre water samples were collected from the terminal drainage points and most of the tributaries in each stream...

The effects of core-reflected waves on finite fault inversion with teleseismic body wave data

NASA Astrophysics Data System (ADS)

Qian, Y.; Ni, S.; Wei, S.

2016-12-01

Reliable estimation of rupture processes for a large earthquake is valuable for post-seismic rescue, tsunami alert, seismotectonic studies, as well as earthquake physics. Finite-fault inversion has been widely accepted to reconstruct the spatial-temporal distribution of rupture processes, which can be obtained by individual or jointly inversion of seismic, geodetic and tsunami data sets. Among the above observations, teleseismic (30° 90°) body waves, usually P and SH waves, have been used extensively in such inversions because their propagation are well understood and readily available for large earthquakes with good coverages of slowness and azimuth. However, finite fault inversion methods usually assume turning P and SH waves without inclusion of core-reflected waves when calculating the synthetic waveforms, which may result in systematic error in finite-fault inversions. For the core-reflected SH wave ScS, it is expected to be strong due to total reflection from Core-Mantle-Boundary. Moreover, the time interval between direct S and ScS could be smaller than the duration of large earthquakes for large epicentral distances. In order to improve the accuracy of finite fault inversion with teleseismic body waves, we develop a procedure named multitel3 to compute Greens' functions that contain both turning waves (P, pP, sP, S, sS et al.) and core-reflected phases (PcP and ScS) and apply it to finite fault inversions. This ray-based method can rapidly calculate teleseismic body wave synthetics with flexibility for path calibration of 3D mantle structure. The new Green's function is plugged into finite fault inversion package to replace the original Green's function with only turning P and SH waves. With the 2008 Mw7.9 Wenchuan earthquake as example, a series of numerical tests conducted on synthetic data are used to assess the performance of our approach. We also explore this new procedure's stability when there are discrepancies between the parameters of input model and the priori information of inverse model, such as strike, dip of finite fault and so on. With the quantified code, we apply it to study rupture process of the 2016 Mw7.8 Sumatra earthquake.

Linear Inverse Modeling and Scaling Analysis of Drainage Inventories.

NASA Astrophysics Data System (ADS)

O'Malley, C.; White, N. J.

2016-12-01

It is widely accepted that the stream power law can be used to describe the evolution of longitudinal river profiles. Over the last 5 years, this phenomenological law has been used to develop non-linear and linear inversion algorithms that enable uplift rate histories to be calculated by minimizing the misfit between observed and calculated river profiles. Substantial, continent-wide inventories of river profiles have been successfully inverted to yield uplift as a function of time and space. Erosional parameters can be determined by independent geological calibration. Our results help to illuminate empirical scaling laws that are well known to the geomorphological community. Here we present an analysis of river profiles from Asia. The timing and magnitude of uplift events across Asia, including the Himalayas and Tibet, have long been debated. River profile analyses have played an important role in clarifying the timing of uplift events. However, no attempt has yet been made to invert a comprehensive database of river profiles from the entire region. Asian rivers contain information which allows us to investigate putative uplift events quantitatively and to determine a cumulative uplift history for Asia. Long wavelength shapes of river profiles are governed by regional uplift and moderated by erosional processes. These processes are parameterised using the stream power law in the form of an advective-diffusive equation. Our non-negative, least-squares inversion scheme was applied to an inventory of 3722 Asian river profiles. We calibrate the key erosional parameters by predicting solid sedimentary flux for a set of Asian rivers and by comparing the flux predictions against published depositional histories for major river deltas. The resultant cumulative uplift history is compared with a range of published geological constraints for uplift and palaeoelevation. We have found good agreement for many regions across Asia. Surprisingly, single values of erosional constants can be shown to produce reliable uplift histories. However, these erosional constants appear to vary from continent to continent. Future work will investigate the global relationship between our inversion results, scaling laws, climate models, lithological variation and sedimentary flux.

Evolution of concentration-discharge relations revealed by high frequency diurnal sampling of stream water during spring snowmelt

NASA Astrophysics Data System (ADS)

Olshansky, Y.; White, A. M.; Thompson, M.; Moravec, B. G.; McIntosh, J. C.; Chorover, J.

2017-12-01

Concentration discharge (C-Q) relations contain potentially important information on critical zone (CZ) processes including: weathering reactions, water flow paths and nutrient export. To examine the C-Q relations in a small (3.3 km2) headwater catchment - La Jara Creek located in the Jemez River Basin Critical Zone Observatory, daily, diurnal stream water samples were collected during spring snow melt 2017, from two flumes located in outlets of the La Jara Creek and a high elevation zero order basin within this catchment. Previous studies from this site (McIntosh et al., 2017) suggested that high frequency sampling was needed to improve our interpretation of C-Q relations. The dense sampling covered two ascending and two descending limbs of the snowmelt hydrograph, from March 1 to May 15, 2017. While Na showed inverse correlation (dilution) with discharge, most other solutes (K, Mg, Fe, Al, dissolved organic carbon) exhibited positive (concentration) or chemostatic trends (Ca, Mn, Si, dissolved inorganic carbon and dissolved nitrogen). Hysteresis in the C-Q relation was most pronounced for bio-cycled cations (K, Mg) and for Fe, which exhibited concentration during the first ascending limb followed by a chemostatic trend. A pulsed increase in Si concentration immediately after the first ascending limb in both flumes suggests mixing of deep groundwater with surface water. A continual increase in Ge/Si concentrations followed by a rapid decrease after the second rising limb may suggest a fast transition between soil water to ground water dominating the stream flow. Fourier transform infrared spectroscopy of selected samples across the hydrograph demonstrated pronounced changes in dissolved organic matter molecular composition with the advancement of the spring snow melt. X-ray micro-spectroscopy of colloidal material isolated from the collected water samples indicated a significant role for organic matter in the transport of inorganic colloids. Analyses of high frequency diurnal sampling greatly improve our ability to probe rapid CZ changes occurring during spring snowmelt, and provide useful information for evaluation and modeling of CZ processes in other snow melt dominated regions.

Influences of upland and riparian land use patterns on stream biotic integrity

USGS Publications Warehouse

Snyder, C.D.; Young, J.A.; Villella, R.; Lemarie, D.P.

2003-01-01

We explored land use, fish assemblage structure, and stream habitat associations in 20 catchments in Opequon Creek watershed, West Virginia. The purpose was to determine the relative importance of urban and agriculture land use on stream biotic integrity, and to evaluate the spatial scale (i.e., whole-catchment vs riparian buffer) at which land use effects were most pronounced. We found that index of biological integrity (IBI) scores were strongly associated with extent of urban land use in individual catchments. Sites that received ratings of poor or very poor based on IBI scores had > 7% of urban land use in their respective catchments. Habitat correlations suggested that urban land use disrupted flow regime, reduced water quality, and altered stream channels. In contrast, we found no meaningful relationship between agricultural land use and IBI at either whole-catchment or riparian scales despite strong correlations between percent agriculture and several important stream habitat measures, including nitrate concentrations, proportion of fine sediments in riffles, and the abundance of fish cover. We also found that variation in gradient (channel slope) influenced responses of fish assemblages to land use. Urban land use was more disruptive to biological integrity in catchments with steeper channel slopes. Based on comparisons of our results in the topographically diverse Opequon Creek watershed with results from watersheds in flatter terrains, we hypothesize that the potential for riparian forests to mitigate effects of deleterious land uses in upland portions of the watershed is inversely related to gradient.

Ice stream behaviour in the western sector of the North Sea during the end of the last glacial cycle

NASA Astrophysics Data System (ADS)

Roberts, David; Evans, David; Clark, Chris; Bateman, Mark; Livingstone, Stephen; Medialdea, Alicia; Cofaigh, Colm O.; Grimoldi, Elena; Callard, Louise; Dove, Dayton; Stewart, Heather; Davies, Bethan; Chiverell, Richard

2016-04-01

During the last glacial cycle the East coast of the UK was overrun by the British-Irish Ice Sheet (BIIS) flowing eastwards and southwards. In recent years it has become evident that several ice streams including the Tweed, Tyne, and Stainmore Gap ice streams, as well as the late stage North Sea Lobe (NSL), all played a role in shaping the glacial landscape during this period, but understanding the flow phasing of these ice streams during advance and collapse has proved challenging. Here we present new data from the seafloor collected during recent work undertaken by the Britice Chrono and Glanam project teams during cruise JC123 in the North Sea. Sub-bottom seafloor data together with new swath data clearly show that the final phases of the collapse of the NSL were controlled by ice sourced from the Firth of Forth ice stream which deglaciated in a NNW trajectory. Other ice streams being fed from the west (e.g. Stainmore, Tyne, Tweed) were not influential in final phase ice retreat from the southern North Sea. The Forth ice imprint is characterised by several grounding zone/till wedges marking dynamic, oscillatory retreat of the ice as it retreated along an offshore corridor between North Yorkshire and Northumberland. Repeated packages of tills, ice marginal and glaciomarine sediments, which drape glacially scoured bedrock terrain and drumlins along this corridor, point to marine inundation accompanying ice retreat. New TCN ages suggest decoupling of the Tyne Gap ice stream and NSL between 17.8 and 16.5 ka and this coincides with rapid, regional collapse of the NSL between 17.2 and 16.0 ka along the Yorkshire and Durham coasts (new OSL ages; Britice Chrono). Hence, both the central and northern sectors of the BIIS were being strongly influenced by marine margin instability during the latter phases of the last glacial cycle.

Household hazardous waste quantification, characterization and management in China's cities: a case study of Suzhou.

PubMed

Gu, Binxian; Zhu, Weimo; Wang, Haikun; Zhang, Rongrong; Liu, Miaomiao; Chen, Yangqing; Wu, Yi; Yang, Xiayu; He, Sheng; Cheng, Rong; Yang, Jie; Bi, Jun

2014-11-01

A four-stage systematic tracking survey of 240 households was conducted from the summer of 2011 to the spring of 2012 in a Chinese city of Suzhou to determine the characteristics of household hazardous waste (HHW) generated by the city. Factor analysis and a regression model were used to study the major driving forces of HHW generation. The results indicate that the rate of HHW generation was 6.16 (0.16-31.74, 95% CI) g/person/day, which accounted for 2.23% of the household solid waste stream. The major waste categories contributing to total HHW were home cleaning products (21.33%), medicines (17.67%) and personal care products (15.19%). Packaging and containers (one-way) and products (single-use) accounted for over 80% of total HHW generation, implying a considerable potential to mitigate HHW generation by changing the packaging design and materials used by manufacturing enterprises. Strong correlations were observed between HHW generation (g/person/day) and the driving forces group of "household structure" and "consumer preferences" (among which the educational level of the household financial manager has the greatest impact). Furthermore, the HHW generation stream in Suzhou suggested the influence of another set of variables, such as local customs and culture, consumption patterns, and urban residential life-style. This study emphasizes that HHW should be categorized at its source (residential households) as an important step toward controlling the HHW hazards of Chinese cities. Copyright © 2014 Elsevier Ltd. All rights reserved.

A software simulation study of a (255,223) Reed-Solomon encoder-decoder

NASA Technical Reports Server (NTRS)

Pollara, F.

1985-01-01

A set of software programs which simulates a (255,223) Reed-Solomon encoder/decoder pair is described. The transform decoder algorithm uses a modified Euclid algorithm, and closely follows the pipeline architecture proposed for the hardware decoder. Uncorrectable error patterns are detected by a simple test, and the inverse transform is computed by a finite field FFT. Numerical examples of the decoder operation are given for some test codewords, with and without errors. The use of the software package is briefly described.

Predicting and Detecting Emerging Cyberattack Patterns Using StreamWorks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chin, George; Choudhury, Sutanay; Feo, John T.

2014-06-30

The number and sophistication of cyberattacks on industries and governments have dramatically grown in recent years. To counter this movement, new advanced tools and techniques are needed to detect cyberattacks in their early stages such that defensive actions may be taken to avert or mitigate potential damage. From a cybersecurity analysis perspective, detecting cyberattacks may be cast as a problem of identifying patterns in computer network traffic. Logically and intuitively, these patterns may take on the form of a directed graph that conveys how an attack or intrusion propagates through the computers of a network. Such cyberattack graphs could providemore » cybersecurity analysts with powerful conceptual representations that are natural to express and analyze. We have been researching and developing graph-centric approaches and algorithms for dynamic cyberattack detection. The advanced dynamic graph algorithms we are developing will be packaged into a streaming network analysis framework known as StreamWorks. With StreamWorks, a scientist or analyst may detect and identify precursor events and patterns as they emerge in complex networks. This analysis framework is intended to be used in a dynamic environment where network data is streamed in and is appended to a large-scale dynamic graph. Specific graphical query patterns are decomposed and collected into a graph query library. The individual decomposed subpatterns in the library are continuously and efficiently matched against the dynamic graph as it evolves to identify and detect early, partial subgraph patterns. The scalable emerging subgraph pattern algorithms will match on both structural and semantic network properties.« less

CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data.

PubMed

Maenhout, Steven; De Baets, Bernard; Haesaert, Geert

2009-10-15

Phenotypic data collected in breeding programs and marker-trait association studies are often analyzed by means of linear mixed models. In these models, the covariance between the genetic background effects of all genotypes under study is modeled by means of pairwise coefficients of coancestry. Several marker-based coancestry estimation procedures allow to estimate this covariance matrix, but generally introduce a certain amount of bias when the examined genotypes are part of a breeding program. CoCoa implements the most commonly used marker-based coancestry estimation procedures and as such, allows to select the best fitting covariance structure for the phenotypic data at hand. This better model fit translates into an increased power and improved type I error control in association studies and an improved accuracy in phenotypic prediction studies. The presented software package also provides an implementation of the new Weighted Alikeness in State (WAIS) estimator for use in hybrid breeding programs. Besides several matrix manipulation tools, CoCoa implements two different bending heuristics, in case the inverse of an ill-conditioned coancestry matrix estimate is needed. The software package CoCoa is freely available at http://webs.hogent.be/cocoa. Source code, manual, binaries for 32 and 64-bit Linux systems and an installer for Microsoft Windows are provided. The core components of CoCoa are written in C++, while the graphical user interface is written in Java.

Two different streams form the dorsal visual system: anatomy and functions.

PubMed

Rizzolatti, Giacomo; Matelli, Massimo

2003-11-01

There are two radically different views on the functional role of the dorsal visual stream. One considers it as a system involved in space perception. The other is of a system that codes visual information for action organization. On the basis of new anatomical data and a reconsideration of previous functional and clinical data, we propose that the dorsal stream and its recipient parietal areas form two distinct functional systems: the dorso-dorsal stream (d-d stream) and the ventro-dorsal stream (v-d stream). The d-d stream is formed by area V6 (main d-d extrastriate visual node) and areas V6A and MIP of the superior parietal lobule. Its major functional role is the control of actions "on line". Its damage leads to optic ataxia. The v-d stream is formed by area MT (main v-d extrastriate visual node) and by the visual areas of the inferior parietal lobule. As the d-d stream, v-d stream is responsible for action organization. It, however, also plays a crucial role in space perception and action understanding. The putative mechanisms linking action and perception in the v-d stream is discussed.

Double streams of protons in the distant geomagnetic tail

NASA Technical Reports Server (NTRS)

Villante, U.; Lazarus, A. J.

1975-01-01

Two intermingled streams of protons have been observed in the distant geomagnetic tail. The number densities of the two streams are comparable, and their velocity difference tends to lie along the field direction. The lower-velocity stream is probably composed of magnetosheath protons which have diffused through the boundary of the distant tail. The higher-velocity stream appears to originate in the field reversal region.

Integrative neural networks model for prediction of sediment rating curve parameters for ungauged basins

NASA Astrophysics Data System (ADS)

Atieh, M.; Mehltretter, S. L.; Gharabaghi, B.; Rudra, R.

2015-12-01

One of the most uncertain modeling tasks in hydrology is the prediction of ungauged stream sediment load and concentration statistics. This study presents integrated artificial neural networks (ANN) models for prediction of sediment rating curve parameters (rating curve coefficient α and rating curve exponent β) for ungauged basins. The ANN models integrate a comprehensive list of input parameters to improve the accuracy achieved; the input parameters used include: soil, land use, topographic, climatic, and hydrometric data sets. The ANN models were trained on the randomly selected 2/3 of the dataset of 94 gauged streams in Ontario, Canada and validated on the remaining 1/3. The developed models have high correlation coefficients of 0.92 and 0.86 for α and β, respectively. The ANN model for the rating coefficient α is directly proportional to rainfall erosivity factor, soil erodibility factor, and apportionment entropy disorder index, whereas it is inversely proportional to vegetation cover and mean annual snowfall. The ANN model for the rating exponent β is directly proportional to mean annual precipitation, the apportionment entropy disorder index, main channel slope, standard deviation of daily discharge, and inversely proportional to the fraction of basin area covered by wetlands and swamps. Sediment rating curves are essential tools for the calculation of sediment load, concentration-duration curve (CDC), and concentration-duration-frequency (CDF) analysis for more accurate assessment of water quality for ungauged basins.

Optical measurement of transverse molecular diffusion in a microchannel.

PubMed Central

Kamholz, A E; Schilling, E A; Yager, P

2001-01-01

Quantitative analysis of molecular diffusion is a necessity for the efficient design of most microfluidic devices as well as an important biophysical method in its own right. This study demonstrates the rapid measurement of diffusion coefficients of large and small molecules in a microfluidic device, the T-sensor, by means of conventional epifluorescence microscopy. Data were collected by monitoring the transverse flux of analyte from a sample stream into a second stream flowing alongside it. As indicated by the low Reynolds numbers of the system (< 1), flow is laminar, and molecular transport between streams occurs only by diffusion. Quantitative determinations were made by fitting data with predictions of a one-dimensional model. Analysis was made of the flow development and its effect on the distribution of diffusing analyte using a three-dimensional modeling software package. Diffusion coefficients were measured for four fluorescently labeled molecules: fluorescein-biotin, insulin, ovalbumin, and streptavidin. The resulting values differed from accepted results by an average of 2.4%. Microfluidic system parameters can be selected to achieve accurate diffusion coefficient measurements and to optimize other microfluidic devices that rely on precise transverse transport of molecules. PMID:11259309

Anthropogenic Carbon Pump in an Urbanized Estuary

NASA Astrophysics Data System (ADS)

Park, J. H.; Yoon, T. K.; Jin, H.; Begum, M. S.

2015-12-01

The importance of estuaries as a carbon source has been increasingly recognized over the recent decades. However, constraining sources of CO2 evasion from urbanized estuaries remains incomplete, particularly in densely populated river systems receiving high loads of organic carbon from anthropogenic sources. To account for major factors regulating carbon fluxes the tidal reach of the Han River estuary along the metropolitan Seoul, characterization of organic carbon in the main stem and major urban tributaries were combined with continuous, submersible sensor measurements of pCO2 at a mid-channel location over a year and continuous underway measurements using a submersible sensor and two equilibrator sytems across the estuarine section receiving urban streams. Single-site continuous measurements exhibited large seasonal and diurnal variations in pCO2, ranging from sub-ambient air levels to exceptionally high values approaching 10,000 ppm. Diurnal variations of pCO2 were pronounced in summer and had an inverse relationship with dissolved oxygen, pointing to a potential role of day-time algal consumption of CO2. Cruise measurements displayed sharp pCO2 pulses along the confluences of urban streams as compared with relatively low values along the upper estuary receiving low-CO2 outflows from upstream dams. Large downstream increases in pCO2, concurrent with increases in DOC concentrations and fluorescence intensities indicative of microbially processed organic components, imply a translocation and subsequent dilution of CO2 carried by urban streams and/or fast transformations of labile C during transit along downstream reaches. The unique combination of spatial and temporal continuous measurements of pCO2 provide insights on estuarine CO2 pulses that might have resulted from the interplay between high loads of CO2 and organic C of anthropogenic origin and their priming effects on estuarine microbial processing of terrigenous and algal organic matter.

Flows, droughts, and aliens: factors affecting the fish assemblage in a Sierra Nevada, California, stream.

PubMed

Kiernan, Joseph D; Moyle, Peter B

2012-06-01

The fishes of Martis Creek, in the Sierra Nevada of California (USA), were sampled at four sites annually over 30 years, 1979-2008. This long-term data set was used to examine (1) the persistence and stability of the Martis Creek fish assemblage in the face of environmental stochasticity; (2) whether native and alien fishes responded differently to a natural hydrologic regime (e.g., timing and magnitude of high and low flows); and (3) the importance of various hydrologic and physical habitat variables in explaining the abundances of native and alien fish species through time. Our results showed that fish assemblages were persistent at all sample sites, but individual species exhibited marked interannual variability in density, biomass, and relative abundance. The density and biomass of native fishes generally declined over the period of study, whereas most alien species showed no significant long-term trends. Only alien rainbow trout increased in both density and biomass at all sites over time. Redundancy analysis identified three hydrologic variables (annual 7-day minimum discharge, maximum winter discharge, and number of distinct winter floods) and two habitat variables (percentage of pool habitat and percentage of gravel substrate) that each explained a significant portion of the annual variation in fish assemblage structure. For alien taxa, their proportional contribution to the total fish assemblage was inversely related to mean annual streamflow, one-day maximum discharge in both winter and spring, and the frequency of springtime floods. Results of this study highlight the need for continuous annual monitoring of streams with highly variable flow regimes to evaluate shifts in fish community structure. Apparent successes or failures in stream management may appear differently depending on the time series of available data.

MPEG-1 low-cost encoder solution

NASA Astrophysics Data System (ADS)

Grueger, Klaus; Schirrmeister, Frank; Filor, Lutz; von Reventlow, Christian; Schneider, Ulrich; Mueller, Gerriet; Sefzik, Nicolai; Fiedrich, Sven

1995-02-01

A solution for real-time compression of digital YCRCB video data to an MPEG-1 video data stream has been developed. As an additional option, motion JPEG and video telephone streams (H.261) can be generated. For MPEG-1, up to two bidirectional predicted images are supported. The required computational power for motion estimation and DCT/IDCT, memory size and memory bandwidth have been the main challenges. The design uses fast-page-mode memory accesses and requires only one single 80 ns EDO-DRAM with 256 X 16 organization for video encoding. This can be achieved only by using adequate access and coding strategies. The architecture consists of an input processing and filter unit, a memory interface, a motion estimation unit, a motion compensation unit, a DCT unit, a quantization control, a VLC unit and a bus interface. For using the available memory bandwidth by the processing tasks, a fixed schedule for memory accesses has been applied, that can be interrupted for asynchronous events. The motion estimation unit implements a highly sophisticated hierarchical search strategy based on block matching. The DCT unit uses a separated fast-DCT flowgraph realized by a switchable hardware unit for both DCT and IDCT operation. By appropriate multiplexing, only one multiplier is required for: DCT, quantization, inverse quantization, and IDCT. The VLC unit generates the video-stream up to the video sequence layer and is directly coupled with an intelligent bus-interface. Thus, the assembly of video, audio and system data can easily be performed by the host computer. Having a relatively low complexity and only small requirements for DRAM circuits, the developed solution can be applied to low-cost encoding products for consumer electronics.

Runoff sources and flow paths dynamics in the Andean Páramo.

NASA Astrophysics Data System (ADS)

Correa, Alicia; Windhorst, David; Tetzlaff, Doerthe; Silva, Camila; Crespo, Patricio; Celleri, Rolando; Feyen, Jan; Breuer, Lutz

2017-04-01

The dynamics of runoff sources and flow paths in headwater catchments are still poorly understood. This is even more the case for remote areas such as the Páramo (Alpine grasslands) in the Andes, where these ecosystems act as water towers for a large fraction of the society. Temporal dynamics in water source areas, flow paths and relative age were assessed in a small catchment in the Ecuadorian Andes using data from the Zhurucay Ecohydrological Observatory (7.53 km2). We applied End Member Mixing Analysis, Hydrograph Separation and Inverse Transit Time Proxies to a multi-tracer set of solutes, stable isotopes, pH and electrical conductivity sampled from stream and twelve potential sources during two years. Rainfall, spring water and water from the bottom layers of Histosols (located at the foot of the hillslopes and in the riparian zone) and Andosols (located at the hillslopes) represented the dominant sources for runoff generation. Water coming from Histosols was the main contributor to stream water year-round, in line with a hydrological system that is dominated by pre-event water. Rainfall presented a uniform contribution during the year, while in drier conditions the spring water tripled in contribution. In wetter conditions, the relative age of stream water decreases, when the contributing area of the riparian zone expands, increasing the connectivity with lateral flow from hillslopes to the channel network. Being one of the earliest in the region, this multi-method study improved the understanding of the hydrological processes of headwater catchments and allowed to demonstrate that catchments with relatively homogeneous hydro-climatic conditions are characterized by inter-annual varying source contributions.

Lahar flow simulation using Laharz_py program: Application for the Mt. Halla volcano, Jeju, Korea

NASA Astrophysics Data System (ADS)

Chang, C.; Yun, S. H.; Yi, W.

2017-12-01

Lahar, one of catastrophic events, has the potential to cause the loss of life and damage to infrastructure over inhabited areas. This study using Laharz_py, was performed schematic prediction on the impact area of lahar hazards at the Mt. Halla volcano, Jeju island. In order to comprehensively address the impact of lahar for the Mt. Halla, two distinct parameters, H/L ratio and lahar volume, were selected to influence variable for Laharz_py simulation. It was carried out on the basis of numerical simulation by estimating a possible lahar volumes of 30,000, 50,000, 70,000, 100,000, 300,000, 500,000 m3 according to H/L ratios (0.20, 0.22 and 0.25) was applied. Based on the numerical simulations, the area of the proximal hazard zone boundary is gradually decreased with increasing H/L ratio. The number of streams which affected by lahar, tended to decrease with increasing H/L ratio. In the case of H/L ratio 0.20, three streams (Gwangryeong stream, Dogeun stream, Han stream) in the Jeju-si area and six streams (Gungsan stream, Hogeun stream, Seohong stream, Donghong stream, Bomok stream, Yeong stream-Hyodon stream) in the Seogwipo-si area are affected. In the case of H/L ratio 0.22, two streams (Gwangryeong stream and Han stream) in the Jeju-si area and five streams (Gungsan stream, Seohong stream, Donghong stream, Bomok stream, Yeong stream-Hyodon stream) in the Seogwipo-si area are affected. And in the case of H/L ratio 0.25, two streams (Gwangryeong stream and Han stream) in the Jeju-si area and one stream (Yeong stream-Hyodon stream) in the Seogwipo-si area are affected. The results of this study will be used as basic data to create a risk map for the direct damage that can be caused due to volcanic hazards arising from Mt. Halla. This research was supported by a grant [MPSS-NH-2015-81] through the Disaster and Safety Management Institute funded by Ministry of Public Safety and Security of Korean government.

Interpolation of Water Quality Along Stream Networks from Synoptic Data

NASA Astrophysics Data System (ADS)

Lyon, S. W.; Seibert, J.; Lembo, A. J.; Walter, M. T.; Gburek, W. J.; Thongs, D.; Schneiderman, E.; Steenhuis, T. S.

2005-12-01

Effective catchment management requires water quality monitoring that identifies major pollutant sources and transport and transformation processes. While traditional monitoring schemes involve regular sampling at fixed locations in the stream, there is an interest synoptic or `snapshot' sampling to quantify water quality throughout a catchment. This type of sampling enables insights to biogeochemical behavior throughout a stream network at low flow conditions. Since baseflow concentrations are temporally persistence, they are indicative of the health of the ecosystems. A major problem with snapshot sampling is the lack of analytical techniques to represent the spatially distributed data in a manner that is 1) easily understood, 2) representative of the stream network, and 3) capable of being used to develop land management scenarios. This study presents a kriging application using the landscape composition of the contributing area along a stream network to define a new distance metric. This allows for locations that are more `similar' to stay spatially close together while less similar locations `move' further apart. We analyze a snapshot sampling campaign consisting of 125 manually collected grab samples during a summer recession flow period in the Townbrook Research Watershed. The watershed is located in the Catskill region of New York State and represents the mixed forest-agriculture land uses of the region. Our initial analysis indicated that stream nutrients (nitrogen and phosphorus) and chemical (major cations and anions) concentrations are controlled by the composition of landscape characteristics (landuse classes and soil types) surrounding the stream. Based on these relationships, an intuitively defined distance metric is developed by combining the traditional distance between observations and the relative difference in composition of contributing area. This metric is used to interpolate between the sampling locations with traditional geostatistic techniques (semivariograms and ordinary kriging). The resulting interpolations provide continuous stream nutrient and chemical concentrations with reduced kriging RMSE (i.e., the interpolation fits the actual data better) performed without path restriction to the stream channel (i.e., the current default for most geostatistical packages) or performed with an in-channel, Euclidean distance metric (i.e., `as the fish swims' distance). In addition to being quantifiably better, the new metric also produces maps of stream concentrations that match expected continuous stream concentrations based on expert knowledge of the watershed. This analysis and its resulting stream concentration maps provide a representation of spatially distributed synoptic data that can be used to quantify water quality for more effective catchment management that focuses on pollutant sources and transport and transformation processes.

Relations of biological indicators to nutrient data for lakes and streams in Pennsylvania and West Virginia, 1990-98

USGS Publications Warehouse

Brightbill, Robin A.; Koerkle, Edward H.

2003-01-01

The Clean Water Action Plan of 1998 provides a blueprint for federal agencies to work with states, tribes, and other stakeholders to protect and restore the Nation's water resources. The plan includes an initiative that addresses the nutrient-enrichment problem of lakes and streams across the United States. The U.S. Environmental Protection Agency (USEPA) is working to set nutrient criteria by nationwide nutrient ecoregions that are an aggregation of the Omernik level III ecoregions. Because low levels of nutrients are necessary for healthy streams and elevated concentrations can cause algal blooms that deplete available oxygen and kill off aquatic organisms, criteria levels are to be set, in part, using the relation between chlorophyll a and concentrations of total nitrogen and total phosphorus.Data from Pennsylvania and West Virginia, collected between 1990 and 1998, were analyzed for relations between chlorophyll a, nutrients, and other explanatory variables. Both phytoplankton and periphyton chlorophyll a concentrations from lakes and streams were analyzed separately within each of the USEPA nutrient ecoregions located within the boundaries of the two states. These four nutrient ecoregions are VII (Mostly Glaciated Dairy), VIII (Nutrient Poor, Largely Glaciated Upper Midwest and Northeast), IX (Southeastern Temperate Forested Plains and Hills), and XI (Central and Eastern Forested Uplands).Phytoplankton chlorophyll a concentrations in lakes were related to total nitrogen, total phosphorus, Secchi depth, concentration of dissolved oxygen, pH, water temperature, and specific conductivity. In nutrient ecoregion VII, nutrients were not significant predictors of chlorophyll a concentrations. Total nitrogen, Secchi depth, and pH were significantly related to phytoplankton chlorophyll a concentrations in nutrient ecoregion IX. Lake periphyton chlorophyll a concentrations from nutrient ecoregion XI were related to total phosphorus rather than total nitrogen, Secchi depth, and pH. In all cases, Secchi depth was inversely related to the chlorophyll a concentrations in a lake. Nutrient ecoregion VIII had too few samples for any type of analysis.Streams within the different nutrient ecoregions had many variables that were significantly related to periphyton chlorophyll a concentrations. These variables consisted of total nitrogen, total phosphorus, drainage area, percent forest cover, several macroinvertebrate indices, pH, basin slope, total residue, total suspended solids, and water temperature. Nutrients were not significantly related to periphyton chlorophyll a in streams within nutrient ecoregions VII or IX but were in nutrient ecoregion XI. Drainage area, percent forest cover, and several invertebrate indices were significant variables in nutrient ecoregion VII. Percent forest cover and several invertebrate indices had a negative relation with chlorophyll a concentrations in these streams. Percent forest cover and basin slope had a negative effect on periphyton in nutrient ecoregion IX streams. Light availability was more critical to periphyton growth in streams than nutrients.Ecoregion XI had enough samples to do seasonal analyses. Summer-season periphyton chlorophyll a concentrations in nutrient ecoregion XI streams were positively related to total phosphorus and drainage area but negatively related to percent forest cover. Summer-season phytoplankton in streams was related to different variables within the same nutrient ecoregion. Both total nitrogen and total phosphorus were positively related with chlorophyll a concentrations as well as basin slope, total residue, and total suspended solids but negatively related to pH. The winter stream phytoplankton chlorophyll a concentrations were related to water temperature only.

Ash Tree Leaf Litter (Fraxinus excelsior L.) Breakdown in Two Different Biotopes and Streams

NASA Astrophysics Data System (ADS)

Fleituch, Tadeusz; Leichtfried, Maria

2004-11-01

Coarse (0.5 mm) and fine (0.1 mm) mesh size bag methodology was used for comparing the breakdown of ash tree leaves (Fraxinus excelsior L.) in two biotopes (dry - terrestrial and wet - overflown stream zones) in two low order streams (the Oberer Seebach (OSB), Lower Austria and the Brzezowka stream (BRZ), Beskidy Mountains, southern Poland). In total, 96 bags were exposed in autumn 2000. Ash-free dry mass (AFDM) ranged in dry zones of both streams from 94-62% (OSB) and 85-53% (BRZ) respectively. The decomposition process was faster in wet zones: 96-33% (OSB) and 56-11% (B) during the study period. Significant differences in ash breakdown and its chemical content between studied streams were found. Total organic carbon (TOC) and total nitrogen content (TN) of AFDM of litter showed increased differences with experiment duration between zones and between two bag types for both streams. The strongest increase of TOC and TN content (100% on average initial content) for bag types, zones, and streams was observed in the first two weeks of the experiment. These results confirm the importance of chemical compounds for microbiological processes (biofilms) in different ecosystem biotopes. (

The Effects of Elevated Specific Conductivity on the Chronic Toxicity of Mining Influenced Streams Using Ceriodaphnia dubia

PubMed Central

Armstead, Mindy Yeager; Bitzer-Creathers, Leah; Wilson, Mandee

2016-01-01

Salinization of freshwater ecosystems as a result of human activities has markedly increased in recent years. Much attention is currently directed at evaluating the effects of increased salinity on freshwater biota. In the Central Appalachian region of the eastern United States, specific conductance from alkaline discharges associated with mountain top mining practices has been implicated in macroinvertebrate community declines in streams receiving coal mining discharges. Whole effluent toxicity testing of receiving stream water was used to test the hypothesis that mine discharges are toxic to laboratory test organisms and further, that toxicity is related to ionic concentrations as indicated by conductivity. Chronic toxicity testing using Ceriodaphnia dubia was conducted by contract laboratories at 72 sites with a total of 129 tests over a 3.5 year period. The database was evaluated to determine the ionic composition of mine effluent dominated streams and whether discharge constituents were related to toxicity in C. dubia. As expected, sulfate was found to be the dominant anion in streams receiving mining discharges with bicarbonate variable and sometimes a substantial component of the dissolved solids. Overall, the temporal variability in conductance was low at each site which would indicate fairly stable water quality conditions. Results of the toxicity tests show no relationship between conductance and survival of C. dubia in the mining influenced streams with the traditional toxicity test endpoints. However, consideration of the entire dataset revealed a significant inverse relationship between conductivity and neonate production. While conductivity explained very little of the high variability in the offspring production (r2 = 0.1304), the average numbers of offspring were consistently less than 20 neonates at the highest conductivities. PMID:27814378

Interactions between dorsal and ventral streams for controlling skilled grasp

PubMed Central

van Polanen, Vonne; Davare, Marco

2015-01-01

The two visual systems hypothesis suggests processing of visual information into two distinct routes in the brain: a dorsal stream for the control of actions and a ventral stream for the identification of objects. Recently, increasing evidence has shown that the dorsal and ventral streams are not strictly independent, but do interact with each other. In this paper, we argue that the interactions between dorsal and ventral streams are important for controlling complex object-oriented hand movements, especially skilled grasp. Anatomical studies have reported the existence of direct connections between dorsal and ventral stream areas. These physiological interconnections appear to be gradually more active as the precision demands of the grasp become higher. It is hypothesised that the dorsal stream needs to retrieve detailed information about object identity, stored in ventral stream areas, when the object properties require complex fine-tuning of the grasp. In turn, the ventral stream might receive up to date grasp-related information from dorsal stream areas to refine the object internal representation. Future research will provide direct evidence for which specific areas of the two streams interact, the timing of their interactions and in which behavioural context they occur. PMID:26169317

Earth Core and Inner Core: What Can We Learn From a Bayesian Inversion of Combined Nutation and Surface Gravimetry Data?

NASA Astrophysics Data System (ADS)

Lambert, S. B.; Ziegler, Y.; Rosat, S.; Bizouard, C.

2017-12-01

Nutation time series derived from very long baseline interferometry (VLBI) and time varying surface gravity data recorded by superconducting gravimeters (SG) have long been used separately to assess the Earth's interior via the estimation of the free core and inner core resonance effects on nutation or tidal gravity. The results obtained from these two techniques have shown recently to be consistent, making relevant the combination of VLBI and SG observables and the estimation of Earth's interior parameters in a single inversion. We present here the results of combining nutation and surface gravity time series to improve estimates of the Earth's core and inner core resonant frequencies. We use VLBI nutation time series spanning 1984-2016 derived by several analysis centers affiliated to the International VLBI Service for Geodesy and Astrometry, together with surface gravity data from about 15 SG stations. We address the resonance model used for describing the Earth's interior response to tidal excitation, the data preparation consisting of the error recalibration and amplitude fitting to nutation data, and processing of SG time-varying gravity to remove any gaps, spikes, steps and other disturbances, followed by the tidal analysis with the ETERNA 3.4 software package. New estimates of the resonant periods are proposed and correlations between the parameters are investigated.

Development practices and lessons learned in developing SimPEG

NASA Astrophysics Data System (ADS)

Cockett, R.; Heagy, L. J.; Kang, S.; Rosenkjaer, G. K.

2015-12-01

Inverse modelling provides a mathematical framework for constructing a model of physical property distributions in the subsurface that are consistent with the data collected in geophysical surveys. The geosciences are increasingly moving towards the integration of geological, geophysical, and hydrological information to better characterize the subsurface. This integration must span disciplines and is not only challenging scientifically, but additionally the inconsistencies between conventions often makes implementations complicated, non­ reproducible, or inefficient. SimPEG is an open-source, multi-university effort aimed at providing a generalized framework for solving forward and inverse problems. SimPEG includes finite volume discretizations on structured and unstructured meshes, interfaces to standard numerical solver packages, convex optimization algorithms, model parameterizations, and visualization routines. The SimPEG package (http://simpeg.xyz) supports an ecosystem of forward and inverse modelling applications, including electromagnetics, vadose zone flow, seismic, and potential­ fields, that are all written with a common interface and toolbox. The goal of SimPEG is to support a community of researchers with well-tested, extensible tools, and encourage transparency and reproducibility both of the SimPEG software and the geoscientific research it is applied to. In this presentation, we will share some of the lessons we have learned in designing the modular infrastructure, testing and development practices of SimPEG. We will discuss our use of version control, extensive unit-testing, continuous integration, documentation, issue tracking, and resources that facilitate communication between existing team members and allows new researchers to get involved. These practices have enabled the use of SimPEG in research, industry, and education as well as the ability to support a growing number of dependent repositories and applications. We hope that sharing our practices and experiences will help other researchers who are creating communities around their own scientific software. As this session suggests, "software is critical to the success of science," but, it is the *communities* of researchers that must be supported as we strive to create top quality research tools.

Seep and stream nitrogen dynamics in two adjacent mixed land use watersheds

USDA-ARS?s Scientific Manuscript database

In many headwater catchments, stream flow originates from surface seeps and springs. The objective of this study was to determine the influence of seeps on nitrogen (N) dynamics within the stream and at the outlet of two adjacent mixed land use watersheds. Nitrogen concentrations in stream water wer...

A Subnano-g Electrostatic Force-Rebalanced Flexure Accelerometer for Gravity Gradient Instruments.

PubMed

Yan, Shitao; Xie, Yafei; Zhang, Mengqi; Deng, Zhongguang; Tu, Liangcheng

2017-11-18

A subnano-g electrostatic force-rebalanced flexure accelerometer is designed for the rotating accelerometer gravity gradient instrument. This accelerometer has a large proof mass, which is supported inversely by two pairs of parallel leaf springs and is centered between two fixed capacitor plates. This novel design enables the proof mass to move exactly along the sensitive direction and exhibits a high rejection ratio at its cross-axis directions. Benefiting from large proof mass, high vacuum packaging, and air-tight sealing, the thermal Brownian noise of the accelerometer is lowered down to less than 0.2 ng / Hz with a quality factor of 15 and a natural resonant frequency of about 7.4 Hz . The accelerometer's designed measurement range is about ±1 mg. Based on the correlation analysis between a commercial triaxial seismometer and our accelerometer, the demonstrated self-noise of our accelerometers is reduced to lower than 0.3 ng / Hz over the frequency ranging from 0.2 to 2 Hz, which meets the requirement of the rotating accelerometer gravity gradiometer.

A Subnano-g Electrostatic Force-Rebalanced Flexure Accelerometer for Gravity Gradient Instruments

PubMed Central

Yan, Shitao; Xie, Yafei; Zhang, Mengqi; Deng, Zhongguang

2017-01-01

A subnano-g electrostatic force-rebalanced flexure accelerometer is designed for the rotating accelerometer gravity gradient instrument. This accelerometer has a large proof mass, which is supported inversely by two pairs of parallel leaf springs and is centered between two fixed capacitor plates. This novel design enables the proof mass to move exactly along the sensitive direction and exhibits a high rejection ratio at its cross-axis directions. Benefiting from large proof mass, high vacuum packaging, and air-tight sealing, the thermal Brownian noise of the accelerometer is lowered down to less than 0.2 ng/Hz with a quality factor of 15 and a natural resonant frequency of about 7.4 Hz. The accelerometer’s designed measurement range is about ±1 mg. Based on the correlation analysis between a commercial triaxial seismometer and our accelerometer, the demonstrated self-noise of our accelerometers is reduced to lower than 0.3 ng/Hz over the frequency ranging from 0.2 to 2 Hz, which meets the requirement of the rotating accelerometer gravity gradiometer. PMID:29156587

A failure of conflict to modulate dual-stream processing may underlie the formation and maintenance of delusions.

PubMed

Speechley, W J; Murray, C B; McKay, R M; Munz, M T; Ngan, E T C

2010-03-01

Dual-stream information processing proposes that reasoning is composed of two interacting processes: a fast, intuitive system (Stream 1) and a slower, more logical process (Stream 2). In non-patient controls, divergence of these streams may result in the experience of conflict, modulating decision-making towards Stream 2, and initiating a more thorough examination of the available evidence. In delusional schizophrenia patients, a failure of conflict to modulate decision-making towards Stream 2 may reduce the influence of contradictory evidence, resulting in a failure to correct erroneous beliefs. Delusional schizophrenia patients and non-patient controls completed a deductive reasoning task requiring logical validity judgments of two-part conditional statements. Half of the statements were characterized by a conflict between logical validity (Stream 2) and content believability (Stream 1). Patients were significantly worse than controls in determining the logical validity of both conflict and non-conflict conditional statements. This between groups difference was significantly greater for the conflict condition. The results are consistent with the hypothesis that delusional schizophrenia patients fail to use conflict to modulate towards Stream 2 when the two streams of reasoning arrive at incompatible judgments. This finding provides encouraging preliminary support for the Dual-Stream Modulation Failure model of delusion formation and maintenance. 2009 Elsevier Masson SAS. All rights reserved.

PAF: A software tool to estimate free-geometry extended bodies of anomalous pressure from surface deformation data

NASA Astrophysics Data System (ADS)

Camacho, A. G.; Fernández, J.; Cannavò, F.

2018-02-01

We present a software package to carry out inversions of surface deformation data (any combination of InSAR, GPS, and terrestrial data, e.g., EDM, levelling) as produced by 3D free-geometry extended bodies with anomalous pressure changes. The anomalous structures are described as an aggregation of elementary cells (whose effects are estimated as coming from point sources) in an elastic half space. The linear inverse problem (considering some simple regularization conditions) is solved by means of an exploratory approach. This software represents the open implementation of a previously published methodology (Camacho et al., 2011). It can be freely used with large data sets (e.g. InSAR data sets) or with data coming from small control networks (e.g. GPS monitoring data), mainly in volcanic areas, to estimate the expected pressure bodies representing magmatic intrusions. Here, the software is applied to some real test cases.

Retrieving the aerosol complex refractive index using PyMieScatt: A Mie computational package with visualization capabilities

NASA Astrophysics Data System (ADS)

Sumlin, Benjamin J.; Heinson, William R.; Chakrabarty, Rajan K.

2018-01-01

The complex refractive index m = n + ik of a particle is an intrinsic property which cannot be directly measured; it must be inferred from its extrinsic properties such as the scattering and absorption cross-sections. Bohren and Huffman called this approach "describing the dragon from its tracks", since the inversion of Lorenz-Mie theory equations is intractable without the use of computers. This article describes PyMieScatt, an open-source module for Python that contains functionality for solving the inverse problem for complex m using extensive optical and physical properties as input, and calculating regions where valid solutions may exist within the error bounds of laboratory measurements. Additionally, the module has comprehensive capabilities for studying homogeneous and coated single spheres, as well as ensembles of homogeneous spheres with user-defined size distributions, making it a complete tool for studying the optical behavior of spherical particles.

Process for recovering organic components from liquid streams

DOEpatents

Blume, Ingo; Baker, Richard W.

1991-01-01

A separation process for recovering organic components from liquid streams. The process is a combination of pervaporation and decantation. In cases where the liquid stream contains the organic to be separated in dissolved form, the pervaporation step is used to concentrate the organic to a point above the solubility limit, so that a two-phase permeate is formed and then decanted. In cases where the liquid stream is a two-phase mixture, the decantation step is performed first, to remove the organic product phase, and the residue from the decanter is then treated by pervaporation. The condensed permeate from the pervaporation unit is sufficiently concentrated in the organic component to be fed back to the decanter. The process can be tailored to produce only two streams: an essentially pure organic product stream suitable for reuse, and a residue stream for discharge or reuse.

Effect of climate on the trophic structure of temperate forested streams. a comparison of Mediterranean and Atlantic streams.

PubMed

Sabater, Sergi; Elosegi, Arturo; Acuña, Vicenç; Basaguren, Ana; Muñoz, Isabel; Pozo, Jesús

2008-02-15

Climate affects many aspects of stream ecosystems, although the presence of riparian forests can buffer differences between streams in different climatic settings. In an attempt to measure the importance of climate, we compared the seasonal patterns of hydrology, input and storage of allochthonous organic matter, and the trophic structure (abundance of algae and macroinvertebrates) in two temperate forested streams, one Mediterranean, the other Atlantic. Hydrology played a leading role in shaping the trophic structure of both streams. Frequency and timing of floods and droughts determined benthic detritus storage. Inputs and retention of allochthonous organic matter were higher in the Atlantic stream, whereas chlorophyll concentration was lower because of stronger light limitation. Instead, light availability and scour of particulate organic matter during late winter favoured higher chlorophyll concentration in the Mediterranean stream. As a result, in the Mediterranean stream grazers were more prevalent and consumers showed a higher dependence on autotrophic materials. On the other hand, the Atlantic stream depended on allochthonous materials throughout the whole study period. The overall trophic structure showed much stronger seasonality in the Mediterranean than in the Atlantic stream, this being the most distinctive difference between these two types of temperate streams. The different patterns observed in the two streams are an indication that climatic differences should be incorporated in proper measurements of ecosystem health.

Reforming of fuel inside fuel cell generator

DOEpatents

Grimble, Ralph E.

1988-01-01

Disclosed is an improved method of reforming a gaseous reformable fuel within a solid oxide fuel cell generator, wherein the solid oxide fuel cell generator has a plurality of individual fuel cells in a refractory container, the fuel cells generating a partially spent fuel stream and a partially spent oxidant stream. The partially spent fuel stream is divided into two streams, spent fuel stream I and spent fuel stream II. Spent fuel stream I is burned with the partially spent oxidant stream inside the refractory container to produce an exhaust stream. The exhaust stream is divided into two streams, exhaust stream I and exhaust stream II, and exhaust stream I is vented. Exhaust stream II is mixed with spent fuel stream II to form a recycle stream. The recycle stream is mixed with the gaseous reformable fuel within the refractory container to form a fuel stream which is supplied to the fuel cells. Also disclosed is an improved apparatus which permits the reforming of a reformable gaseous fuel within such a solid oxide fuel cell generator. The apparatus comprises a mixing chamber within the refractory container, means for diverting a portion of the partially spent fuel stream to the mixing chamber, means for diverting a portion of exhaust gas to the mixing chamber where it is mixed with the portion of the partially spent fuel stream to form a recycle stream, means for injecting the reformable gaseous fuel into the recycle stream, and means for circulating the recycle stream back to the fuel cells.

Reforming of fuel inside fuel cell generator

DOEpatents

Grimble, R.E.

1988-03-08

Disclosed is an improved method of reforming a gaseous reformable fuel within a solid oxide fuel cell generator, wherein the solid oxide fuel cell generator has a plurality of individual fuel cells in a refractory container, the fuel cells generating a partially spent fuel stream and a partially spent oxidant stream. The partially spent fuel stream is divided into two streams, spent fuel stream 1 and spent fuel stream 2. Spent fuel stream 1 is burned with the partially spent oxidant stream inside the refractory container to produce an exhaust stream. The exhaust stream is divided into two streams, exhaust stream 1 and exhaust stream 2, and exhaust stream 1 is vented. Exhaust stream 2 is mixed with spent fuel stream 2 to form a recycle stream. The recycle stream is mixed with the gaseous reformable fuel within the refractory container to form a fuel stream which is supplied to the fuel cells. Also disclosed is an improved apparatus which permits the reforming of a reformable gaseous fuel within such a solid oxide fuel cell generator. The apparatus comprises a mixing chamber within the refractory container, means for diverting a portion of the partially spent fuel stream to the mixing chamber, means for diverting a portion of exhaust gas to the mixing chamber where it is mixed with the portion of the partially spent fuel stream to form a recycle stream, means for injecting the reformable gaseous fuel into the recycle stream, and means for circulating the recycle stream back to the fuel cells. 1 fig.

Visual and visuomotor processing of hands and tools as a case study of cross talk between the dorsal and ventral streams.

PubMed

Almeida, Jorge; Amaral, Lénia; Garcea, Frank E; Aguiar de Sousa, Diana; Xu, Shan; Mahon, Bradford Z; Martins, Isabel Pavão

2018-05-24

A major principle of organization of the visual system is between a dorsal stream that processes visuomotor information and a ventral stream that supports object recognition. Most research has focused on dissociating processing across these two streams. Here we focus on how the two streams interact. We tested neurologically-intact and impaired participants in an object categorization task over two classes of objects that depend on processing within both streams-hands and tools. We measured how unconscious processing of images from one of these categories (e.g., tools) affects the recognition of images from the other category (i.e., hands). Our findings with neurologically-intact participants demonstrated that processing an image of a hand hampers the subsequent processing of an image of a tool, and vice versa. These results were not present in apraxic patients (N = 3). These findings suggest local and global inhibitory processes working in tandem to co-register information across the two streams.

Laboratory Connections: Review of Two Commercial Interfacing Packages.

ERIC Educational Resources Information Center

Powers, Michael H.

1989-01-01

Evaluates two Apple II interfacing packages designed to measure pH: (1) "Experiments in Chemistry" by HRM Software and (2) "Voltage Plotter III" by Vernier Software. Provides characteristics and screen dumps of each package. Reports both systems are suitable for high school or beginning college laboratories. (MVL)

Real-Time GPS Monitoring for Earthquake Rapid Assessment in the San Francisco Bay Area

NASA Astrophysics Data System (ADS)

Guillemot, C.; Langbein, J. O.; Murray, J. R.

2012-12-01

The U.S. Geological Survey Earthquake Science Center has deployed a network of eight real-time Global Positioning System (GPS) stations in the San Francisco Bay area and is implementing software applications to continuously evaluate the status of the deformation within the network. Real-time monitoring of the station positions is expected to provide valuable information for rapidly estimating source parameters should a large earthquake occur in the San Francisco Bay area. Because earthquake response applications require robust data access, as a first step we have developed a suite of web-based applications which are now routinely used to monitor the network's operational status and data streaming performance. The web tools provide continuously updated displays of important telemetry parameters such as data latency and receive rates, as well as source voltage and temperature information within each instrument enclosure. Automated software on the backend uses the streaming performance data to mitigate the impact of outages, radio interference and bandwidth congestion on deformation monitoring operations. A separate set of software applications manages the recovery of lost data due to faulty communication links. Displacement estimates are computed in real-time for various combinations of USGS, Plate Boundary Observatory (PBO) and Bay Area Regional Deformation (BARD) network stations. We are currently comparing results from two software packages (one commercial and one open-source) used to process 1-Hz data on the fly and produce estimates of differential positions. The continuous monitoring of telemetry makes it possible to tune the network to minimize the impact of transient interruptions of the data flow, from one or more stations, on the estimated positions. Ongoing work is focused on using data streaming performance history to optimize the quality of the position, reduce drift and outliers by switching to the best set of stations within the network, and automatically select the "next best" station to use as reference. We are also working towards minimizing the loss of streamed data during concurrent data downloads by improving file management on the GPS receivers.

ESMPy and OpenClimateGIS: Python Interfaces for High Performance Grid Remapping and Geospatial Dataset Manipulation

NASA Astrophysics Data System (ADS)

O'Kuinghttons, Ryan; Koziol, Benjamin; Oehmke, Robert; DeLuca, Cecelia; Theurich, Gerhard; Li, Peggy; Jacob, Joseph

2016-04-01

The Earth System Modeling Framework (ESMF) Python interface (ESMPy) supports analysis and visualization in Earth system modeling codes by providing access to a variety of tools for data manipulation. ESMPy started as a Python interface to the ESMF grid remapping package, which provides mature and robust high-performance and scalable grid remapping between 2D and 3D logically rectangular and unstructured grids and sets of unconnected data. ESMPy now also interfaces with OpenClimateGIS (OCGIS), a package that performs subsetting, reformatting, and computational operations on climate datasets. ESMPy exposes a subset of ESMF grid remapping utilities. This includes bilinear, finite element patch recovery, first-order conservative, and nearest neighbor grid remapping methods. There are also options to ignore unmapped destination points, mask points on source and destination grids, and provide grid structure in the polar regions. Grid remapping on the sphere takes place in 3D Cartesian space, so the pole problem is not an issue as it can be with other grid remapping software. Remapping can be done between any combination of 2D and 3D logically rectangular and unstructured grids with overlapping domains. Grid pairs where one side of the regridding is represented by an appropriate set of unconnected data points, as is commonly found with observational data streams, is also supported. There is a developing interoperability layer between ESMPy and OpenClimateGIS (OCGIS). OCGIS is a pure Python, open source package designed for geospatial manipulation, subsetting, and computation on climate datasets stored in local NetCDF files or accessible remotely via the OPeNDAP protocol. Interfacing with OCGIS has brought GIS-like functionality to ESMPy (i.e. subsetting, coordinate transformations) as well as additional file output formats (i.e. CSV, ESRI Shapefile). ESMPy is distinguished by its strong emphasis on open source, community governance, and distributed development. The user base has grown quickly, and the package is integrating with several other software tools and frameworks. These include the Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT), Iris, PyFerret, cfpython, and the Community Surface Dynamics Modeling System (CSDMS). ESMPy minimum requirements include Python 2.6, Numpy 1.6.1 and an ESMF installation. Optional dependencies include NetCDF and OCGIS-related dependencies: GDAL, Shapely, and Fiona. ESMPy is regression tested nightly, and supported on Darwin, Linux and Cray systems with the GNU compiler suite and MPI communications. OCGIS is supported on Linux, and also undergoes nightly regression testing. Both packages are installable from Anaconda channels. Upcoming development plans for ESMPy involve development of a higher order conservative grid remapping method. Future OCGIS development will focus on mesh and location stream interoperability and streamlined access to ESMPy's MPI implementation.

Novel two stage bio-oxidation and chlorination process for high strength hazardous coal carbonization effluent.

PubMed

Manekar, Pravin; Biswas, Rima; Karthik, Manikavasagam; Nandy, Tapas

2011-05-15

Effluent generated from coal carbonization to coke was characterized with high organic content, phenols, ammonium nitrogen, and cyanides. A full scale effluent treatment plant (ETP) working on the principle of single stage carbon-nitrogen bio-oxidation process (SSCNBP) revealed competition between heterotrophic and autotrophic bacteria in the bio-degradation and nitrification process. The effluent was pretreated in a stripper and further combined with other streams to treat in the SSCNBP. Laboratory studies were carried on process and stripped effluents in a bench scale model of ammonia stripper and a two stage bio-oxidation process. The free ammonia removal efficiency of stripper was in the range 70-89%. Bench scale studies of the two stage bio-oxidation process achieved a carbon-nitrogen reduction at 6 days hydraulic retention time (HRT) operating in an extended aeration mode. This paper addresses the studies on selection of a treatment process for removal of organic matter, phenols, cyanide and ammonia nitrogen. The treatment scheme comprising ammonia stripping (pretreatment) followed by the two stage bio-oxidation and chlorination process met the Indian Standards for discharge into Inland Surface Waters. This treatment process package offers a techno-economically viable treatment scheme to neuter hazardous effluent generated from coal carbonization process. Copyright © 2011 Elsevier B.V. All rights reserved.

Trophic Interactions Between Insects and Stream-Associated Amphibians in Steep, Cobble-Bottom Streams of the Pacific Coast of North America

PubMed Central

Atwood, Trisha; Richardson, John S.

2012-01-01

Two native, stream-associated amphibians are found in coastal streams of the west coast of North America, the tailed frog and the coastal giant salamander, and each interacts with stream insects in contrasting ways. For tailed frogs, their tadpoles are the primary life stage found in steep streams and they consume biofilm from rock surfaces, which can have trophic and non-trophic effects on stream insects. By virtue of their size the tadpoles are relatively insensitive to stream insect larvae, and tadpoles are capable of depleting biofilm levels directly (exploitative competition), and may also “bulldoze” insect larvae from the surfaces of stones (interference competition). Coastal giant salamander larvae, and sometimes adults, are found in small streams where they prey primarily on stream insects, as well as other small prey. This predator-prey interaction with stream insects does not appear to result in differences in the stream invertebrate community between streams with and without salamander larvae. These two examples illustrate the potential for trophic and non-trophic interactions between stream-associated amphibians and stream insects, and also highlights the need for further research in these systems. PMID:26466536

Superamphiphobic Silicon-Nanowire-Embedded Microsystem and In-Contact Flow Performance of Gas and Liquid Streams.

PubMed

Ko, Dong-Hyeon; Ren, Wurong; Kim, Jin-Oh; Wang, Jun; Wang, Hao; Sharma, Siddharth; Faustini, Marco; Kim, Dong-Pyo

2016-01-26

Gas and liquid streams are invariably separated either by a solid wall or by a membrane for heat or mass transfer between the gas and liquid streams. Without the separating wall, the gas phase is present as bubbles in liquid or, in a microsystem, as gas plugs between slugs of liquid. Continuous and direct contact between the two moving streams of gas and liquid is quite an efficient way of achieving heat or mass transfer between the two phases. Here, we report a silicon nanowire built-in microsystem in which a liquid stream flows in contact with an underlying gas stream. The upper liquid stream does not penetrate into the lower gas stream due to the superamphiphobic nature of the silicon nanowires built into the bottom wall, thereby preserving the integrity of continuous gas and liquid streams, although they are flowing in contact. Due to the superamphiphobic nature of silicon nanowires, the microsystem provides the best possible interfacial mass transfer known to date between flowing gas and liquid phases, which can achieve excellent chemical performance in two-phase organic syntheses.

A coupled surface-water and ground-water flow model (MODBRANCH) for simulation of stream-aquifer interaction

USGS Publications Warehouse

Swain, Eric D.; Wexler, Eliezer J.

1996-01-01

Ground-water and surface-water flow models traditionally have been developed separately, with interaction between subsurface flow and streamflow either not simulated at all or accounted for by simple formulations. In areas with dynamic and hydraulically well-connected ground-water and surface-water systems, stream-aquifer interaction should be simulated using deterministic responses of both systems coupled at the stream-aquifer interface. Accordingly, a new coupled ground-water and surface-water model was developed by combining the U.S. Geological Survey models MODFLOW and BRANCH; the interfacing code is referred to as MODBRANCH. MODFLOW is the widely used modular three-dimensional, finite-difference ground-water model, and BRANCH is a one-dimensional numerical model commonly used to simulate unsteady flow in open- channel networks. MODFLOW was originally written with the River package, which calculates leakage between the aquifer and stream, assuming that the stream's stage remains constant during one model stress period. A simple streamflow routing model has been added to MODFLOW, but is limited to steady flow in rectangular, prismatic channels. To overcome these limitations, the BRANCH model, which simulates unsteady, nonuniform flow by solving the St. Venant equations, was restructured and incorporated into MODFLOW. Terms that describe leakage between stream and aquifer as a function of streambed conductance and differences in aquifer and stream stage were added to the continuity equation in BRANCH. Thus, leakage between the aquifer and stream can be calculated separately in each model, or leakages calculated in BRANCH can be used in MODFLOW. Total mass in the coupled models is accounted for and conserved. The BRANCH model calculates new stream stages for each time interval in a transient simulation based on upstream boundary conditions, stream properties, and initial estimates of aquifer heads. Next, aquifer heads are calculated in MODFLOW based on stream stages calculated by BRANCH, aquifer properties, and stresses. This process is repeated until convergence criteria are met for head and stage. Because time steps used in ground-water modeling can be much longer than time intervals used in surface- water simulations, provision has been made for handling multiple BRANCH time intervals within one MODFLOW time step. An option was also added to BRANCH to allow the simulation of channel drying and rewetting. Testing of the coupled model was verified by using data from previous studies; by comparing results with output from a simpler, four-point implicit, open-channel flow model linked with MODFLOW; and by comparison to field studies of L-31N canal in southern Florida.

Heuristic for Critical Machine Based a Lot Streaming for Two-Stage Hybrid Production Environment

NASA Astrophysics Data System (ADS)

Vivek, P.; Saravanan, R.; Chandrasekaran, M.; Pugazhenthi, R.

2017-03-01

Lot streaming in Hybrid flowshop [HFS] is encountered in many real world problems. This paper deals with a heuristic approach for Lot streaming based on critical machine consideration for a two stage Hybrid Flowshop. The first stage has two identical parallel machines and the second stage has only one machine. In the second stage machine is considered as a critical by valid reasons these kind of problems is known as NP hard. A mathematical model developed for the selected problem. The simulation modelling and analysis were carried out in Extend V6 software. The heuristic developed for obtaining optimal lot streaming schedule. The eleven cases of lot streaming were considered. The proposed heuristic was verified and validated by real time simulation experiments. All possible lot streaming strategies and possible sequence under each lot streaming strategy were simulated and examined. The heuristic consistently yielded optimal schedule consistently in all eleven cases. The identification procedure for select best lot streaming strategy was suggested.

Apparatus and method for two-stage oxidation of wastes

DOEpatents

Fleischman, Scott D.

1995-01-01

An apparatus and method for oxidizing wastes in a two-stage process. The apparatus includes an oxidation device, a gas-liquid contacting column and an electrocell. In the first stage of the process, wastes are heated in the presence of air to partially oxidize the wastes. The heated wastes produce an off-gas stream containing oxidizable materials. In the second stage, the off-gas stream is cooled and flowed through the contacting column, where the off-gas stream is contacted with an aqueous acid stream containing an oxidizing agent having at least two positive valence states. At least a portion of the oxidizable materials are transferred to the acid stream and destroyed by the oxidizing agent. During oxidation, the valence of the oxidizing agent is decreased from its higher state to its lower state. The acid stream is flowed to the electrocell, where an electric current is applied to the stream to restore the oxidizing agent to its higher valence state. The regenerated acid stream is recycled to the contacting column.

Tracking tracer breakthrough in the hyporheic zone using time‐lapse DC resistivity, Crabby Creek, Pennsylvania

USGS Publications Warehouse

Nyquist, Jonathan E.; Toran, Laura; Fang, Allison C.; Ryan, Robert J.; Rosenberry, Donald O.

2010-01-01

Characterization of the hyporheic zone is of critical importance for understanding stream ecology, contaminant transport, and groundwater‐surface water interaction. A salt water tracer test was used to probe the hyporheic zone of a recently re‐engineered portion of Crabby Creek, a stream located near Philadelphia, PA. The tracer solution was tracked through a 13.5 meter segment of the stream using both a network of 25 wells sampled every 5–15 minutes and time‐lapse electrical resistivity tomographs collected every 11 minutes for six hours, with additional tomographs collected every 100 minutes for an additional 16 hours. The comparison of tracer monitoring methods is of keen interest because tracer tests are one of the few techniques available for characterizing this dynamic zone, and logistically it is far easier to collect resistivity tomographs than to install and monitor a dense network of wells. Our results show that resistivity monitoring captured the essential shape of the breakthrough curve and may indicate portions of the stream where the tracer lingered in the hyporheic zone. Time‐lapse resistivity measurements, however, represent time averages over the period required to collect a tomographic data set, and spatial averages over a volume larger than captured by a well sample. Smoothing by the resistivity data inversion algorithm further blurs the resulting tomograph; consequently resistivity monitoring underestimates the degree of fine‐scale heterogeneity in the hyporheic zone.

Floodwater Chemistry in the Yolo Bypass during Winter and Spring 1998

USGS Publications Warehouse

Schemel, Laurence E.; Cox, Marisa H.

2007-01-01

A preliminary investigation of temporal and spatial variations in floodwater chemistry was conducted during winter and spring 1998 in the Yolo Bypass floodplain of the Sacramento River system. Samples were collected at locations along the eastern margin of the floodplain over the duration of the study and across the floodplain during major periods of inundation. Specific conductance and dissolved organic carbon concentrations along the eastern margin of the Yolo Bypass varied inversely with discharge. The Sacramento River was the greatest source of discharge to the floodplain during major periods of inundation. Increases in specific conductance and dissolved organic carbon were observed along the eastern margin during periods of lower discharge, when local streams accounted for a significant fraction of the total discharge through the Yolo Bypass. Apparent influences of local stream discharges also were observed in surface waters near the western margin of the floodplain during major periods of inundation. Although river and local stream sources of suspended particulate matter appeared important, in-floodplain processes were likely contributors to temporal and spatial variability in concentrations. Values for the C:N ratio of the particulate matter were lowest during periods of decreasing and low discharge through the floodplain, indicating production of phytoplankton in floodplain waters or supply to the floodplain by local stream sources. Phytoplankton discharged from the Yolo Bypass was detected by chlorophyll a monitors downstream in the Sacramento River during this study.

Electrokinetic energy conversion efficiency of viscoelastic fluids in a polyelectrolyte-grafted nanochannel.

PubMed

Jian, Yongjun; Li, Fengqin; Liu, Yongbo; Chang, Long; Liu, Quansheng; Yang, Liangui

2017-08-01

In order to conduct extensive investigation of energy harvesting capabilities of nanofluidic devices, we provide analytical solutions for streaming potential and electrokinetic energy conversion (EKEC) efficiency through taking the combined consequences of soft nanochannel, a rigid nanochannel whose surface is covered by charged polyelectrolyte layer, and viscoelastic rheology into account. The viscoelasticity of the fluid is considered by employing the Maxwell constitutive model when the forcing frequency of an oscillatory driving pressure flow matches with the inverse of the relaxation time scale of a typical viscoelastic fluid. We compare the streaming potential and EKEC efficiency with those of a rigid nanochannel, having zeta potential equal to the electrostatic potential at the solid-polyelectrolyte interface of the soft nanochannels. Within the present selected parameter ranges, it is shown that the different peaks of maximal streaming potential and EKEC efficiency for the rigid nanochannel are larger than those for the soft nanochannel when forcing frequencies of the driving pressure gradient are close to resonating frequencies. However, more enhanced streaming potential and EKEC efficiency for a soft nanochannel can be found in most of the regions away from these resonant frequencies. Moreover, the influence of several dimensionless parameters on EKEC efficiency is discussed in detail. Finally, within the given parametric regions, the maximum efficiency at some resonant frequency obtained in present analysis is about 25%. Copyright © 2017 Elsevier B.V. All rights reserved.

Robust inverse-consistent affine CT-MR registration in MRI-assisted and MRI-alone prostate radiation therapy.

PubMed

Rivest-Hénault, David; Dowson, Nicholas; Greer, Peter B; Fripp, Jurgen; Dowling, Jason A

2015-07-01

CT-MR registration is a critical component of many radiation oncology protocols. In prostate external beam radiation therapy, it allows the propagation of MR-derived contours to reference CT images at the planning stage, and it enables dose mapping during dosimetry studies. The use of carefully registered CT-MR atlases allows the estimation of patient specific electron density maps from MRI scans, enabling MRI-alone radiation therapy planning and treatment adaptation. In all cases, the precision and accuracy achieved by registration influences the quality of the entire process. Most current registration algorithms do not robustly generalize and lack inverse-consistency, increasing the risk of human error and acting as a source of bias in studies where information is propagated in a particular direction, e.g. CT to MR or vice versa. In MRI-based treatment planning where both CT and MR scans serve as spatial references, inverse-consistency is critical, if under-acknowledged. A robust, inverse-consistent, rigid/affine registration algorithm that is well suited to CT-MR alignment in prostate radiation therapy is presented. The presented method is based on a robust block-matching optimization process that utilises a half-way space definition to maintain inverse-consistency. Inverse-consistency substantially reduces the influence of the order of input images, simplifying analysis, and increasing robustness. An open source implementation is available online at http://aehrc.github.io/Mirorr/. Experimental results on a challenging 35 CT-MR pelvis dataset demonstrate that the proposed method is more accurate than other popular registration packages and is at least as accurate as the state of the art, while being more robust and having an order of magnitude higher inverse-consistency than competing approaches. The presented results demonstrate that the proposed registration algorithm is readily applicable to prostate radiation therapy planning. Copyright © 2015. Published by Elsevier B.V.

Child-resistant and tamper-resistant packaging: A systematic review to inform tobacco packaging regulation.

PubMed

Jo, Catherine L; Ambs, Anita; Dresler, Carolyn M; Backinger, Cathy L

2017-02-01

We aimed to investigate the effects of special packaging (child-resistant, adult-friendly) and tamper-resistant packaging on health and behavioral outcomes in order to identify research gaps and implications for packaging standards for tobacco products. We searched seven databases for keywords related to special and tamper-resistant packaging, consulted experts, and reviewed citations of potentially relevant studies. 733 unique papers were identified. Two coders independently screened each title and abstract for eligibility. They then reviewed the full text of the remaining papers for a second round of eligibility screening. Included studies investigated a causal relationship between type of packaging or packaging regulation and behavioral or health outcomes and had a study population composed of consumers. Studies were excluded on the basis of publication type, if they were not peer-reviewed, and if they had low external validity. Two reviewers independently coded each paper for study and methodological characteristics and limitations. Discrepancies were discussed and resolved. The review included eight studies: four assessing people's ability to access the contents of different packaging types and four evaluating the impact of packaging requirements on health-related outcomes. Child-resistant packaging was generally more difficult to open than non-child-resistant packaging. Child-resistant packaging requirements have been associated with reductions in child mortality. Child-resistant packaging holds the expectation to reduce tobacco product poisonings among children under six. Published by Elsevier Inc.

Child-resistant and tamper-resistant packaging: A systematic review to inform tobacco packaging regulation

PubMed Central

Jo, Catherine L.; Ambs, Anita; Dresler, Carolyn M.; Backinger, Cathy L.

2017-01-01

Objective We aimed to investigate the effects of special packaging (child-resistant, adult-friendly) and tamper-resistant packaging on health and behavioral outcomes in order to identify research gaps and implications for packaging standards for tobacco products. Methods We searched seven databases for keywords related to special and tamper-resistant packaging, consulted experts, and reviewed citations of potentially relevant studies. 733 unique papers were identified. Two coders independently screened each title and abstract for eligibility. They then reviewed the full text of the remaining papers for a second round of eligibility screening. Included studies investigated a causal relationship between type of packaging or packaging regulation and behavioral or health outcomes and had a study population composed of consumers. Studies were excluded on the basis of publication type, if they were not peer-reviewed, and if they had low external validity. Two reviewers independently coded each paper for study and methodological characteristics and limitations. Discrepancies were discussed and resolved. Results The review included eight studies: four assessing people’s ability to access the contents of different packaging types and four evaluating the impact of packaging requirements on health-related outcomes. Child-resistant packaging was generally more difficult to open than non-child-resistant packaging. Child-resistant packaging requirements have been associated with reductions in child mortality. Conclusions Child-resistant packaging holds the expectation to reduce tobacco product poisonings among children under six. PMID:27939602

Software to Control and Monitor Gas Streams

NASA Technical Reports Server (NTRS)

Arkin, C.; Curley, Charles; Gore, Eric; Floyd, David; Lucas, Damion

2012-01-01

This software package interfaces with various gas stream devices such as pressure transducers, flow meters, flow controllers, valves, and analyzers such as a mass spectrometer. The software provides excellent user interfacing with various windows that provide time-domain graphs, valve state buttons, priority- colored messages, and warning icons. The user can configure the software to save as much or as little data as needed to a comma-delimited file. The software also includes an intuitive scripting language for automated processing. The configuration allows for the assignment of measured values or calibration so that raw signals can be viewed as usable pressures, flows, or concentrations in real time. The software is based on those used in two safety systems for shuttle processing and one volcanic gas analysis system. Mass analyzers typically have very unique applications and vary from job to job. As such, software available on the market is usually inadequate or targeted on a specific application (such as EPA methods). The goal was to develop powerful software that could be used with prototype systems. The key problem was to generalize the software to be easily and quickly reconfigurable. At Kennedy Space Center (KSC), the prior art consists of two primary methods. The first method was to utilize Lab- VIEW and a commercial data acquisition system. This method required rewriting code for each different application and only provided raw data. To obtain data in engineering units, manual calculations were required. The second method was to utilize one of the embedded computer systems developed for another system. This second method had the benefit of providing data in engineering units, but was limited in the number of control parameters.

Acid-base characteristics of the Grass Pond watershed in the Adirondack Mountains of New York State, USA: interactions among soil, vegetation and surface waters

NASA Astrophysics Data System (ADS)

McEathron, K. M.; Mitchell, M. J.; Zhang, L.

2013-07-01

Grass Pond watershed is located within the southwestern Adirondack Mountain region of New York State, USA. This region receives some of the highest rates of acidic deposition in North America and is particularly sensitive to acidic inputs due to many of its soils having shallow depths and being generally base poor. Differences in soil chemistry and tree species between seven subwatersheds were examined in relation to acid-base characteristics of the seven major streams that drain into Grass Pond. Mineral soil pH, stream water BCS (base-cation surplus) and pH exhibited a positive correlation with sugar maple basal area (p = 0.055; 0.48 and 0.39, respectively). Black cherry basal area was inversely correlated with stream water BCS, ANC (acid neutralizing capacity)c and NO3- (p = 0.23; 0.24 and 0.20, respectively). Sugar maple basal areas were positively associated with watershed characteristics associated with the neutralization of atmospheric acidic inputs while in contrast, black cherry basal areas showed opposite relationships to these same watershed characteristics. Canonical correspondence analysis indicated that black cherry had a distinctive relationship with forest floor chemistry apart from the other tree species, specifically a strong positive association with forest floor NH4, while sugar maple had a distinctive relationship with stream chemistry variables, specifically a strong positive association with stream water ANCc, BCS and pH. Our results provide evidence that sugar maple is acid-intolerant or calciphilic tree species and also demonstrate that black cherry is likely an acid-tolerant tree species.

Hyporheic Passive Flux Meters Reveal Inverse Vertical Zonation and High Seasonality of Nitrogen Processing in an Anthropogenically Modified Stream (Holtemme, Germany)

NASA Astrophysics Data System (ADS)

Kunz, Julia Vanessa; Annable, Michael D.; Rao, Suresh; Rode, Michael; Borchardt, Dietrich

2017-12-01

Transformation and retention of nitrogen and other biologically reactive solutes in the hyporheic zones of running water contribute to an essential ecosystem service. However, the synoptic impact of intense agricultural or urban land-uses, elevated nutrient loading, flow alterations, riparian clear-cutting, and channelization on the source-sink behavior of solutes in hyporheic zones remains largely uncharacterized and unquantified. Therefore, we studied nutrient dynamics in a hydromorphologically and chemically modified stream reach using a new monitoring approach allowing the simultaneous measurement of nutrient and water flux through a screened area in the subsurface of rivers (hyporheic passive flux meter, HPFM). With HPFMs we directly assessed time-integrated lateral hyporheic nitrate fluxes during early spring and midsummer covering different temperature and discharge regimes. Contrary to our expectations, higher stream discharge coincided with substantially lower hyporheic exchange rates. While in streams featuring a natural morphology, bed form induced exchange commonly increases with surface flow, the influence of groundwater level was dominant in this reach. Furthermore, in contrast to less impacted environments, where progressive substrate depletion with depths reduces metabolic rates in the subsurface, we identified not the upper, but the intermediate layer of the hyporheic zone as hot spot of nutrient turnover. Overall, the hyporheic zone at the study site functioned partly as nitrate source, partly as a sink. Neither of the commonly used determinants redox state and residence time could explain this source or sink function. Our results give clear evidence to carefully transfer the knowledge of hyporheic zone processes from "natural" systems to anthropologically modified streams.

Automatic 3D Moment tensor inversions for southern California earthquakes

NASA Astrophysics Data System (ADS)

Liu, Q.; Tape, C.; Friberg, P.; Tromp, J.

2008-12-01

We present a new source mechanism (moment-tensor and depth) catalog for about 150 recent southern California earthquakes with Mw ≥ 3.5. We carefully select the initial solutions from a few available earthquake catalogs as well as our own preliminary 3D moment tensor inversion results. We pick useful data windows by assessing the quality of fits between the data and synthetics using an automatic windowing package FLEXWIN (Maggi et al 2008). We compute the source Fréchet derivatives of moment-tensor elements and depth for a recent 3D southern California velocity model inverted based upon finite-frequency event kernels calculated by the adjoint methods and a nonlinear conjugate gradient technique with subspace preconditioning (Tape et al 2008). We then invert for the source mechanisms and event depths based upon the techniques introduced by Liu et al 2005. We assess the quality of this new catalog, as well as the other existing ones, by computing the 3D synthetics for the updated 3D southern California model. We also plan to implement the moment-tensor inversion methods to automatically determine the source mechanisms for earthquakes with Mw ≥ 3.5 in southern California.

Green Packaging Management of Logistics Enterprises

NASA Astrophysics Data System (ADS)

Zhang, Guirong; Zhao, Zongjian

From the connotation of green logistics management, we discuss the principles of green packaging, and from the two levels of government and enterprises, we put forward a specific management strategy. The management of green packaging can be directly and indirectly promoted by laws, regulations, taxation, institutional and other measures. The government can also promote new investment to the development of green packaging materials, and establish specialized institutions to identify new packaging materials, standardization of packaging must also be accomplished through the power of the government. Business units of large scale through the packaging and container-based to reduce the use of packaging materials, develop and use green packaging materials and easy recycling packaging materials for proper packaging.

Development of Cloud and Precipitation Property Retrieval Algorithms and Measurement Simulators from ASR Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mace, Gerald G.

What has made the ASR program unique is the amount of information that is available. The suite of recently deployed instruments significantly expands the scope of the program (Mather and Voyles, 2013). The breadth of this information allows us to pose sophisticated process-level questions. Our ASR project, now entering its third year, has been about developing algorithms that use this information in ways that fully exploit the new capacity of the ARM data streams. Using optimal estimation (OE) and Markov Chain Monte Carlo (MCMC) inversion techniques, we have developed methodologies that allow us to use multiple radar frequency Doppler spectramore » along with lidar and passive constraints where data streams can be added or subtracted efficiently and algorithms can be reformulated for various combinations of hydrometeors by exchanging sets of empirical coefficients. These methodologies have been applied to boundary layer clouds, mixed phase snow cloud systems, and cirrus.« less

Overcoming equifinality: Leveraging long time series for stream metabolism estimation

USGS Publications Warehouse

Appling, Alison; Hall, Robert O.; Yackulic, Charles B.; Arroita, Maite

2018-01-01

The foundational ecosystem processes of gross primary production (GPP) and ecosystem respiration (ER) cannot be measured directly but can be modeled in aquatic ecosystems from subdaily patterns of oxygen (O2) concentrations. Because rivers and streams constantly exchange O2 with the atmosphere, models must either use empirical estimates of the gas exchange rate coefficient (K600) or solve for all three parameters (GPP, ER, and K600) simultaneously. Empirical measurements of K600 require substantial field work and can still be inaccurate. Three-parameter models have suffered from equifinality, where good fits to O2 data are achieved by many different parameter values, some unrealistic. We developed a new three-parameter, multiday model that ensures similar values for K600 among days with similar physical conditions (e.g., discharge). Our new model overcomes the equifinality problem by (1) flexibly relating K600 to discharge while permitting moderate daily deviations and (2) avoiding the oft-violated assumption that residuals in O2 predictions are uncorrelated. We implemented this hierarchical state-space model and several competitor models in an open-source R package, streamMetabolizer. We then tested the models against both simulated and field data. Our new model reduces error by as much as 70% in daily estimates of K600, GPP, and ER. Further, accuracy benefits of multiday data sets require as few as 3 days of data. This approach facilitates more accurate metabolism estimates for more streams and days, enabling researchers to better quantify carbon fluxes, compare streams by their metabolic regimes, and investigate controls on aquatic activity.

Joint inversions of two VTEM surveys using quasi-3D TDEM and 3D magnetic inversion algorithms

NASA Astrophysics Data System (ADS)

Kaminski, Vlad; Di Massa, Domenico; Viezzoli, Andrea

2016-05-01

In the current paper, we present results of a joint quasi-three-dimensional (quasi-3D) inversion of two versatile time domain electromagnetic (VTEM) datasets, as well as a joint 3D inversion of associated aeromagnetic datasets, from two surveys flown six years apart from one another (2007 and 2013) over a volcanogenic massive sulphide gold (VMS-Au) prospect in northern Ontario, Canada. The time domain electromagnetic (TDEM) data were inverted jointly using the spatially constrained inversion (SCI) approach. In order to increase the coherency in the model space, a calibration parameter was added. This was followed by a joint inversion of the total magnetic intensity (TMI) data extracted from the two surveys. The results of the inversions have been studied and matched with the known geology, adding some new valuable information to the ongoing mineral exploration initiative.

pulver: an R package for parallel ultra-rapid p-value computation for linear regression interaction terms.

PubMed

Molnos, Sophie; Baumbach, Clemens; Wahl, Simone; Müller-Nurasyid, Martina; Strauch, Konstantin; Wang-Sattler, Rui; Waldenberger, Melanie; Meitinger, Thomas; Adamski, Jerzy; Kastenmüller, Gabi; Suhre, Karsten; Peters, Annette; Grallert, Harald; Theis, Fabian J; Gieger, Christian

2017-09-29

Genome-wide association studies allow us to understand the genetics of complex diseases. Human metabolism provides information about the disease-causing mechanisms, so it is usual to investigate the associations between genetic variants and metabolite levels. However, only considering genetic variants and their effects on one trait ignores the possible interplay between different "omics" layers. Existing tools only consider single-nucleotide polymorphism (SNP)-SNP interactions, and no practical tool is available for large-scale investigations of the interactions between pairs of arbitrary quantitative variables. We developed an R package called pulver to compute p-values for the interaction term in a very large number of linear regression models. Comparisons based on simulated data showed that pulver is much faster than the existing tools. This is achieved by using the correlation coefficient to test the null-hypothesis, which avoids the costly computation of inversions. Additional tricks are a rearrangement of the order, when iterating through the different "omics" layers, and implementing this algorithm in the fast programming language C++. Furthermore, we applied our algorithm to data from the German KORA study to investigate a real-world problem involving the interplay among DNA methylation, genetic variants, and metabolite levels. The pulver package is a convenient and rapid tool for screening huge numbers of linear regression models for significant interaction terms in arbitrary pairs of quantitative variables. pulver is written in R and C++, and can be downloaded freely from CRAN at https://cran.r-project.org/web/packages/pulver/ .

Efficient realization of 3D joint inversion of seismic and magnetotelluric data with cross gradient structure constraint

NASA Astrophysics Data System (ADS)

Luo, H.; Zhang, H.; Gao, J.

2016-12-01

Seismic and magnetotelluric (MT) imaging methods are generally used to characterize subsurface structures at various scales. The two methods are complementary to each other and the integration of them is helpful for more reliably determining the resistivity and velocity models of the target region. Because of the difficulty in finding empirical relationship between resistivity and velocity parameters, Gallardo and Meju [2003] proposed a joint inversion method enforcing resistivity and velocity models consistent in structure, which is realized by minimizing cross gradients between two models. However, it is extremely challenging to combine two different inversion systems together along with the cross gradient constraints. For this reason, Gallardo [2007] proposed a joint inversion scheme that decouples the seismic and MT inversion systems by iteratively performing seismic and MT inversions as well as cross gradient minimization separately. This scheme avoids the complexity of combining two different systems together but it suffers the issue of balancing between data fitting and structure constraint. In this study, we have developed a new joint inversion scheme that avoids the problem encountered by the scheme of Gallardo [2007]. In the new scheme, seismic and MT inversions are still separately performed but the cross gradient minimization is also constrained by model perturbations from separate inversions. In this way, the new scheme still avoids the complexity of combining two different systems together and at the same time the balance between data fitting and structure consistency constraint can be enforced. We have tested our joint inversion algorithm for both 2D and 3D cases. Synthetic tests show that joint inversion better reconstructed the velocity and resistivity models than separate inversions. Compared to separate inversions, joint inversion can remove artifacts in the resistivity model and can improve the resolution for deeper resistivity structures. We will also show results applying the new joint seismic and MT inversion scheme to southwest China, where several MT profiles are available and earthquakes are very active.

75 FR 33637 - United States v. Bemis Company, Inc., et al.; Public Comments and Response on Proposed Final...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-14

... shredded natural cheese packaged for retail sale and flexible-packaging shrink bags for fresh meat in the..., production, and sale of flexible-packaging rollstock for chunk, sliced, and shredded natural cheese packaged..., sliced, and shredded natural cheese packaged for retail sale from two to one, would have eliminated...

StreamExplorer: A Multi-Stage System for Visually Exploring Events in Social Streams.

PubMed

Wu, Yingcai; Chen, Zhutian; Sun, Guodao; Xie, Xiao; Cao, Nan; Liu, Shixia; Cui, Weiwei

2017-10-18

Analyzing social streams is important for many applications, such as crisis management. However, the considerable diversity, increasing volume, and high dynamics of social streams of large events continue to be significant challenges that must be overcome to ensure effective exploration. We propose a novel framework by which to handle complex social streams on a budget PC. This framework features two components: 1) an online method to detect important time periods (i.e., subevents), and 2) a tailored GPU-assisted Self-Organizing Map (SOM) method, which clusters the tweets of subevents stably and efficiently. Based on the framework, we present StreamExplorer to facilitate the visual analysis, tracking, and comparison of a social stream at three levels. At a macroscopic level, StreamExplorer uses a new glyph-based timeline visualization, which presents a quick multi-faceted overview of the ebb and flow of a social stream. At a mesoscopic level, a map visualization is employed to visually summarize the social stream from either a topical or geographical aspect. At a microscopic level, users can employ interactive lenses to visually examine and explore the social stream from different perspectives. Two case studies and a task-based evaluation are used to demonstrate the effectiveness and usefulness of StreamExplorer.Analyzing social streams is important for many applications, such as crisis management. However, the considerable diversity, increasing volume, and high dynamics of social streams of large events continue to be significant challenges that must be overcome to ensure effective exploration. We propose a novel framework by which to handle complex social streams on a budget PC. This framework features two components: 1) an online method to detect important time periods (i.e., subevents), and 2) a tailored GPU-assisted Self-Organizing Map (SOM) method, which clusters the tweets of subevents stably and efficiently. Based on the framework, we present StreamExplorer to facilitate the visual analysis, tracking, and comparison of a social stream at three levels. At a macroscopic level, StreamExplorer uses a new glyph-based timeline visualization, which presents a quick multi-faceted overview of the ebb and flow of a social stream. At a mesoscopic level, a map visualization is employed to visually summarize the social stream from either a topical or geographical aspect. At a microscopic level, users can employ interactive lenses to visually examine and explore the social stream from different perspectives. Two case studies and a task-based evaluation are used to demonstrate the effectiveness and usefulness of StreamExplorer.

BoolFilter: an R package for estimation and identification of partially-observed Boolean dynamical systems.

PubMed

Mcclenny, Levi D; Imani, Mahdi; Braga-Neto, Ulisses M

2017-11-25

Gene regulatory networks govern the function of key cellular processes, such as control of the cell cycle, response to stress, DNA repair mechanisms, and more. Boolean networks have been used successfully in modeling gene regulatory networks. In the Boolean network model, the transcriptional state of each gene is represented by 0 (inactive) or 1 (active), and the relationship among genes is represented by logical gates updated at discrete time points. However, the Boolean gene states are never observed directly, but only indirectly and incompletely through noisy measurements based on expression technologies such as cDNA microarrays, RNA-Seq, and cell imaging-based assays. The Partially-Observed Boolean Dynamical System (POBDS) signal model is distinct from other deterministic and stochastic Boolean network models in removing the requirement of a directly observable Boolean state vector and allowing uncertainty in the measurement process, addressing the scenario encountered in practice in transcriptomic analysis. BoolFilter is an R package that implements the POBDS model and associated algorithms for state and parameter estimation. It allows the user to estimate the Boolean states, network topology, and measurement parameters from time series of transcriptomic data using exact and approximated (particle) filters, as well as simulate the transcriptomic data for a given Boolean network model. Some of its infrastructure, such as the network interface, is the same as in the previously published R package for Boolean Networks BoolNet, which enhances compatibility and user accessibility to the new package. We introduce the R package BoolFilter for Partially-Observed Boolean Dynamical Systems (POBDS). The BoolFilter package provides a useful toolbox for the bioinformatics community, with state-of-the-art algorithms for simulation of time series transcriptomic data as well as the inverse process of system identification from data obtained with various expression technologies such as cDNA microarrays, RNA-Seq, and cell imaging-based assays.

Using Synchrotron Radiation Microtomography to Investigate Multi-scale Three-dimensional Microelectronic Packages.

PubMed

Carlton, Holly D; Elmer, John W; Li, Yan; Pacheco, Mario; Goyal, Deepak; Parkinson, Dilworth Y; MacDowell, Alastair A

2016-04-13

Synchrotron radiation micro-tomography (SRµT) is a non-destructive three-dimensional (3D) imaging technique that offers high flux for fast data acquisition times with high spatial resolution. In the electronics industry there is serious interest in performing failure analysis on 3D microelectronic packages, many which contain multiple levels of high-density interconnections. Often in tomography there is a trade-off between image resolution and the volume of a sample that can be imaged. This inverse relationship limits the usefulness of conventional computed tomography (CT) systems since a microelectronic package is often large in cross sectional area 100-3,600 mm(2), but has important features on the micron scale. The micro-tomography beamline at the Advanced Light Source (ALS), in Berkeley, CA USA, has a setup which is adaptable and can be tailored to a sample's properties, i.e., density, thickness, etc., with a maximum allowable cross-section of 36 x 36 mm. This setup also has the option of being either monochromatic in the energy range ~7-43 keV or operating with maximum flux in white light mode using a polychromatic beam. Presented here are details of the experimental steps taken to image an entire 16 x 16 mm system within a package, in order to obtain 3D images of the system with a spatial resolution of 8.7 µm all within a scan time of less than 3 min. Also shown are results from packages scanned in different orientations and a sectioned package for higher resolution imaging. In contrast a conventional CT system would take hours to record data with potentially poorer resolution. Indeed, the ratio of field-of-view to throughput time is much higher when using the synchrotron radiation tomography setup. The description below of the experimental setup can be implemented and adapted for use with many other multi-materials.

How is a stream impacted by burial? Examining the spatial variation within urban buried streams in Cincinnati, OH

EPA Science Inventory

While the effects of urbanization on stream ecosystems have been well-documented, little is known regarding the impact of burying streams within culverts. Our project aims to explore the ecological impacts of stream burial at a fine spatial scale. Two culverted urban streams in C...

Addressing the computational cost of large EIT solutions.

PubMed

Boyle, Alistair; Borsic, Andrea; Adler, Andy

2012-05-01

Electrical impedance tomography (EIT) is a soft field tomography modality based on the application of electric current to a body and measurement of voltages through electrodes at the boundary. The interior conductivity is reconstructed on a discrete representation of the domain using a finite-element method (FEM) mesh and a parametrization of that domain. The reconstruction requires a sequence of numerically intensive calculations. There is strong interest in reducing the cost of these calculations. An improvement in the compute time for current problems would encourage further exploration of computationally challenging problems such as the incorporation of time series data, wide-spread adoption of three-dimensional simulations and correlation of other modalities such as CT and ultrasound. Multicore processors offer an opportunity to reduce EIT computation times but may require some restructuring of the underlying algorithms to maximize the use of available resources. This work profiles two EIT software packages (EIDORS and NDRM) to experimentally determine where the computational costs arise in EIT as problems scale. Sparse matrix solvers, a key component for the FEM forward problem and sensitivity estimates in the inverse problem, are shown to take a considerable portion of the total compute time in these packages. A sparse matrix solver performance measurement tool, Meagre-Crowd, is developed to interface with a variety of solvers and compare their performance over a range of two- and three-dimensional problems of increasing node density. Results show that distributed sparse matrix solvers that operate on multiple cores are advantageous up to a limit that increases as the node density increases. We recommend a selection procedure to find a solver and hardware arrangement matched to the problem and provide guidance and tools to perform that selection.

Health Occupations. Nursing Assistant.

ERIC Educational Resources Information Center

Megow, Joye G.

Materials contained in this package are designed for use with students interested in the occupation of nurses aide. The package has two sections, one which looks closely at the job and the student, and the other--the curriculum phase--which concerns actual student use of learning activity packages (LAPs). These two components together form a "job…

Development of esMOCA Biomechanic, Motion Capture Instrumentation for Biomechanics Analysis

NASA Astrophysics Data System (ADS)

Arendra, A.; Akhmad, S.

2018-01-01

This study aims to build motion capture instruments using inertial measurement unit sensors to assist in the analysis of biomechanics. Sensors used are accelerometer and gyroscope. Estimation of orientation sensors is done by digital motion processing in each sensor nodes. There are nine sensor nodes attached to the upper limbs. This sensor is connected to the pc via a wireless sensor network. The development of kinematics and inverse dynamamic models of the upper limb is done in simulink simmechanic. The kinematic model receives streaming data of sensor nodes mounted on the limbs. The output of the kinematic model is the pose of each limbs and visualized on display. The dynamic inverse model outputs the reaction force and reaction moment of each joint based on the limb motion input. Model validation in simulink with mathematical model of mechanical analysis showed results that did not differ significantly

Technical assessment of processing plants as exemplified by the sorting of beverage cartons from lightweight packaging wastes.

PubMed

Feil, A; Thoden van Velzen, E U; Jansen, M; Vitz, P; Go, N; Pretz, T

2016-02-01

The recovery of beverage cartons (BC) in three lightweight packaging waste processing plants (LP) was analyzed with different input materials and input masses in the area of 21-50Mg. The data was generated by gravimetric determination of the sorting products, sampling and sorting analysis. Since the particle size of beverage cartons is larger than 120mm, a modified sampling plan was implemented and targeted multiple sampling (3-11 individual samplings) and a total sample size of respectively 1200l (ca. 60kg) for the BC-products and of about 2400l (ca. 120kg) for material-heterogeneous mixed plastics (MP) and sorting residue products. The results infer that the quantification of the beverage carton yield in the process, i.e., by including all product-containing material streams, can be specified only with considerable fluctuation ranges. Consequently, the total assessment, regarding all product streams, is rather qualitative than quantitative. Irregular operation conditions as well as unfavorable sampling conditions and capacity overloads are likely causes for high confidence intervals. From the results of the current study, recommendations can basically be derived for a better sampling in LP-processing plants. Despite of the suboptimal statistical results, the results indicate very clear that the plants show definite optimisation potentials with regard to the yield of beverage cartons as well as the required product purity. Due to the test character of the sorting trials the plant parameterization was not ideal for this sorting task and consequently the results should be interpreted with care. Copyright © 2015 Elsevier Ltd. All rights reserved.

Watershed boundaries and digital elevation model of Oklahoma derived from 1:100,000-scale digital topographic maps

USGS Publications Warehouse

Cederstrand, J.R.; Rea, A.H.

1995-01-01

This document provides a general description of the procedures used to develop the data sets included on this compact disc. This compact disc contains watershed boundaries for Oklahoma, a digital elevation model, and other data sets derived from the digital elevation model. The digital elevation model was produced using the ANUDEM software package, written by Michael Hutchinson and licensed from the Centre for Resource and Environmental Studies at The Australian National University. Elevation data (hypsography) and streams (hydrography) from digital versions of the U.S. Geological Survey 1:100,000-scale topographic maps were used by the ANUDEM package to produce a hydrologically conditioned digital elevation model with a 60-meter cell size. This digital elevation model is well suited for drainage-basin delineation using automated techniques. Additional data sets include flow-direction, flow-accumulation, and shaded-relief grids, all derived from the digital elevation model, and the hydrography data set used in producing the digital elevation model. The watershed boundaries derived from the digital elevation model have been edited to be consistent with contours and streams from the U.S. Geological Survey 1:100,000-scale topographic maps. The watershed data set includes boundaries for 11-digit Hydrologic Unit Codes (watersheds) within Oklahoma, and 8-digit Hydrologic Unit Codes (cataloging units) outside Oklahoma. Cataloging-unit boundaries based on 1:250,000-scale maps outside Oklahoma for the Arkansas, Red, and White River basins are included. The other data sets cover Oklahoma, and where available, portions of 1:100,000-scale quadrangles adjoining Oklahoma.

New ArcGIS tools developed for stream network extraction and basin delineations using Python and java script

NASA Astrophysics Data System (ADS)

Omran, Adel; Dietrich, Schröder; Abouelmagd, Abdou; Michael, Märker

2016-09-01

Damages caused by flash floods hazards are an increasing phenomenon, especially in arid and semi-arid areas. Thus, the need to evaluate these areas based on their flash flood risk using maps and hydrological models is also becoming more important. For ungauged watersheds a tentative analysis can be carried out based on the geomorphometric characteristics of the terrain. To process regions with larger watersheds, where perhaps hundreds of watersheds have to be delineated, processed and classified, the overall process need to be automated. GIS packages such as ESRI's ArcGIS offer a number of sophisticated tools that help regarding such analysis. Yet there are still gaps and pitfalls that need to be considered if the tools are combined into a geoprocessing model to automate the complete assessment workflow. These gaps include issues such as i) assigning stream order according to Strahler theory, ii) calculating the threshold value for the stream network extraction, and iii) determining the pour points for each of the nodes of the Strahler ordered stream network. In this study a complete automated workflow based on ArcGIS Model Builder using standard tools will be introduced and discussed. Some additional tools have been implemented to complete the overall workflow. These tools have been programmed using Python and Java in the context of ArcObjects. The workflow has been applied to digital data from the southwestern Sinai Peninsula, Egypt. An optimum threshold value has been selected to optimize drainage configuration by statistically comparing all of the extracted stream configuration results from DEM with the available reference data from topographic maps. The code has succeeded in estimating the correct ranking of specific stream orders in an automatic manner without additional manual steps. As a result, the code has proven to save time and efforts; hence it's considered a very useful tool for processing large catchment basins.

Examination of shipping packages 9975-01641, 9975-01692, 9975-03373, 9975-02101 AND 9975-02713

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daugherty, W. L.

SRNL has assisted in the examination of five 9975 shipping packages following storage of nuclear material in K-Area Complex (KAC). Two packages (9975-01641 and -01692) with water intrusion resulting from a roof leak were selected for detailed examination after internal fiberboard degradation (mold) was observed. 9975-01692 contained regions of saturated fiberboard and significant mold, while the second package was less degraded. A third package (9975-03373) was removed from storage for routine surveillance activities, and set aside for further examination after a musty odor was noted inside. No additional degradation was noted in 9975-03373, but the lower assembly could not bemore » removed from the drum for detailed examination. Two additional packages (9975-02101 and -02713) identified for further examination were among a larger group selected for surveillance as part of a specific focus on high-wattage packages. These two packages displayed several non-conforming conditions, including the following: (1) the axial gap criterion was exceeded, (2) a significant concentration of moisture was found in the bottom fiberboard layers, with active mold in this area, (3) condensation and/or water stains were observed on internal components (drum, lid, air shield), and (4) both drums contained localized corrosion along the bottom lip. It is recommended that a new screening check be implemented for packages that are removed from storage, as well as high wattage packages remaining in storage. An initial survey for corrosion along the drum bottom lip of high wattage packages could identify potential degraded packages for future surveillance focus. In addition, after packages have been removed from storage (and unloaded), the drum bottom lip and underside should be inspected for corrosion. The presence of corrosion could signal the need to remove the lower fiberboard assembly for further inspection of the fiberboard and drum prior to recertification of the package.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trentadue, R.; Clemencic, M.; Dykstra, D.

The LCG Persistency Framework consists of three software packages (CORAL, COOL and POOL) that address the data access requirements of the LHC experiments in several different areas. The project is the result of the collaboration between the CERN IT Department and the three experiments (ATLAS, CMS and LHCb) that are using some or all of the Persistency Framework components to access their data. POOL is a hybrid technology store for C++ objects, using a mixture of streaming and relational technologies to implement both object persistency and object metadata catalogs and collections. CORAL is an abstraction layer with an SQL-free APImore » for accessing data stored using relational database technologies. COOL provides specific software components and tools for the handling of the time variation and versioning of the experiment conditions data. This presentation reports on the status and outlook in each of the three sub-projects at the time of the CHEP2012 conference, reviewing the usage of each package in the three LHC experiments.« less

Rigorous merging of two-stream and Buneman instabilities

NASA Astrophysics Data System (ADS)

Bret, A.

2011-12-01

Two-stream and Buneman instabilities are among the most well-known streaming plasma instabilities. In general, they occur within distinct ranges of wave vectors and can be treated separately in the linear regime. For symmetric counter-streams however, these modes overlap and even merge exactly for some wavelengths. The corresponding range can be expressed using Cardano's method for the resolution of the cubic equation.

Effects of variations of stage and flux at different frequencies on the estimates using river stage tomography

NASA Astrophysics Data System (ADS)

Wang, Y. L.; Yeh, T. C. J.; Wen, J. C.

2017-12-01

This study is to investigate the ability of river stage tomography to estimate the spatial distribution of hydraulic transmissivity (T), storage coefficient (S), and diffusivity (D) in groundwater basins using information of groundwater level variations induced by periodic variations of stream stage, and infiltrated flux from the stream boundary. In order to accomplish this objective, the sensitivity and correlation of groundwater heads with respect to the hydraulic properties is first conducted to investigate the spatial characteristics of groundwater level in response to the stream variations at different frequencies. Results of the analysis show that the spatial distributions of the sensitivity of heads at an observation well in response to periodic river stage variations are highly correlated despite different frequencies. On the other hand, the spatial patterns of the sensitivity of the observed head to river flux boundaries at different frequencies are different. Specifically, the observed head is highly correlated with T at the region between the stream and observation well when the high-frequency periodic flux is considered. On the other hand, it is highly correlated with T at the region between monitoring well and the boundary opposite to the stream when the low-frequency periodic flux is prescribed to the stream. We also find that the spatial distributions of the sensitivity of observed head to S variation are highly correlated with all frequencies in spite of heads or fluxes stream boundary. Subsequently, the differences of the spatial correlations of the observed heads to the hydraulic properties under the head and flux boundary conditions are further investigated by an inverse model (i.e., successive stochastic linear estimator). This investigation uses noise-free groundwater and stream data of a synthetic aquifer, where aquifer heterogeneity is known exactly. The ability of river stage tomography is then tested with these synthetic data sets to estimate T, S, and D distribution. The results reveal that boundary flux variations with different frequencies contain different information about the aquifer characteristics while the head boundary does not.

XAPiir: A recursive digital filtering package

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harris, D.

1990-09-21

XAPiir is a basic recursive digital filtering package, containing both design and implementation subroutines. XAPiir was developed for the experimental array processor (XAP) software package, and is written in FORTRAN. However, it is intended to be incorporated into any general- or special-purpose signal analysis program. It replaces the older package RECFIL, offering several enhancements. RECFIL is used in several large analysis programs developed at LLNL, including the seismic analysis package SAC, several expert systems (NORSEA and NETSEA), and two general purpose signal analysis packages (SIG and VIEW). This report is divided into two sections: the first describes the use ofmore » the subroutine package, and the second, its internal organization. In the first section, the filter design problem is briefly reviewed, along with the definitions of the filter design parameters and their relationship to the subroutine input parameters. In the second section, the internal organization is documented to simplify maintenance and extensions to the package. 5 refs., 9 figs.« less

YAMM - YET ANOTHER MENU MANAGER

NASA Technical Reports Server (NTRS)

Mazer, A. S.

1994-01-01

One of the most time-consuming yet necessary tasks of writing any piece of interactive software is the development of a user interface. Yet Another Menu Manager, YAMM, is an application independent menuing package, designed to remove much of the difficulty and save much of the time inherent in the implementation of the front ends for large packages. Written in C for UNIX-based operating systems, YAMM provides a complete menuing front end for a wide variety of applications, with provisions for terminal independence, user-specific configurations, and dynamic creation of menu trees. Applications running under the menu package consists of two parts: a description of the menu configuration and the body of application code. The menu configuration is used at runtime to define the menu structure and any non-standard keyboard mappings and terminal capabilities. Menu definitions define specific menus within the menu tree. The names used in a definition may be either a reference to an application function or the name of another menu defined within the menu configuration. Application parameters are entered using data entry screens which allow for required and optional parameters, tables, and legal-value lists. Both automatic and application-specific error checking are available. Help is available for both menu operation and specific applications. The YAMM program was written in C for execution on a Sun Microsystems workstation running SunOS, based on the Berkeley (4.2bsd) version of UNIX. During development, YAMM has been used on both 68020 and SPARC architectures, running SunOS versions 3.5 and 4.0. YAMM should be portable to most other UNIX-based systems. It has a central memory requirement of approximately 232K bytes. The standard distribution medium for this program is one .25 inch streaming magnetic tape cartridge in UNIX tar format. It is also available on a 3.5 inch diskette in UNIX tar format. YAMM was developed in 1988 and last updated in 1990. YAMM is a copyrighted work with all copyright vested in NASA.

Modular assembly of chimeric phi29 packaging RNAs that support DNA packaging.

PubMed

Fang, Yun; Shu, Dan; Xiao, Feng; Guo, Peixuan; Qin, Peter Z

2008-08-08

The bacteriophage phi29 DNA packaging motor is a protein/RNA complex that can produce strong force to condense the linear-double-stranded DNA genome into a pre-formed protein capsid. The RNA component, called the packaging RNA (pRNA), utilizes magnesium-dependent inter-molecular base-pairing interactions to form ring-shaped complexes. The pRNA is a class of non-coding RNA, interacting with phi29 motor proteins to enable DNA packaging. Here, we report a two-piece chimeric pRNA construct that is fully competent in interacting with partner pRNA to form ring-shaped complexes, in packaging DNA via the motor, and in assembling infectious phi29 virions in vitro. This is the first example of a fully functional pRNA assembled using two non-covalently interacting fragments. The results support the notion of modular pRNA architecture in the phi29 packaging motor.

Implementation and Analysis of Real-Time Streaming Protocols.

PubMed

Santos-González, Iván; Rivero-García, Alexandra; Molina-Gil, Jezabel; Caballero-Gil, Pino

2017-04-12

Communication media have become the primary way of interaction thanks to the discovery and innovation of many new technologies. One of the most widely used communication systems today is video streaming, which is constantly evolving. Such communications are a good alternative to face-to-face meetings, and are therefore very useful for coping with many problems caused by distance. However, they suffer from different issues such as bandwidth limitation, network congestion, energy efficiency, cost, reliability and connectivity. Hence, the quality of service and the quality of experience are considered the two most important issues for this type of communication. This work presents a complete comparative study of two of the most used protocols of video streaming, Real Time Streaming Protocol (RTSP) and the Web Real-Time Communication (WebRTC). In addition, this paper proposes two new mobile applications that implement those protocols in Android whose objective is to know how they are influenced by the aspects that most affect the streaming quality of service, which are the connection establishment time and the stream reception time. The new video streaming applications are also compared with the most popular video streaming applications for Android, and the experimental results of the analysis show that the developed WebRTC implementation improves the performance of the most popular video streaming applications with respect to the stream packet delay.

Fiberboard humidity data for 9975 shipping packages

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daugherty, W. L.

2015-07-31

The 9975 surveillance program is identifying a technical basis to support extending the storage period of 9975 packages in KAC beyond the currently approved 15 years. A key element of this effort is developing a better understanding of degradation of the fiberboard assembly under storage conditions. This degradation is influenced greatly by the moisture content of the fiberboard, which is not well characterized on an individual package basis.Two efforts have been undertaken to better understand the levels and behavior of moisture within the fiberboard assemblies of the 9975 shipping package. In the first effort, an initial survey of humidity andmore » temperature in the upper air space of 26 packages stored in KAC was made. The data collected within this first effort help to illustrate how the upper air space humidity varies with the local ambient temperature and package heat load. In the second effort, direct measurements of two test packages are providing a correlation between humidity and fiberboard moisture levels within the package, and variations in moisture throughout the fiberboard assembly. This effort has examined packages with cane fiberboard and internal heat levels of 5 and 10W to date. Additional testing is expected to include 15 and 19W heat levels, and then repeat the same four heat levels with softwood fiberboard assemblies. This report documents the data collected to date within these two efforts.« less

Fiberboard Humidity Data for 9975 Shipping Packages

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daugherty, W.

The 9975 surveillance program is identifying a technical basis to support extending the storage period of 9975 packages in KAC beyond the currently approved 15 years. A key element of this effort is developing a better understanding of degradation of the fiberboard assembly under storage conditions. This degradation is influenced greatly by the moisture content of the fiberboard, which is not well characterized on an individual package basis. Two efforts have been undertaken to better understand the levels and behavior of moisture within the fiberboard assemblies of the 9975 shipping package. In the first effort, an initial survey of humiditymore » and temperature in the upper air space of 26 packages stored in KAC was made. The data collected within this first effort help to illustrate how the upper air space humidity varies with the local ambient temperature and package heat load. In the second effort, direct measurements of two test packages are providing a correlation between humidity and fiberboard moisture levels within the package, and variations in moisture throughout the fiberboard assembly. This effort has examined packages with cane fiberboard and internal heat levels of 5 and 10W to date. Additional testing is expected to include 15 and 19W heat levels, and then repeat the same four heat levels with softwood fiberboard assemblies. This report documents the data collected to date within these two efforts« less

Fiberboard humidity data for 9975 shipping packages

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daugherty, W. L.

The 9975 surveillance program is identifying a technical basis to support extending the storage period of 9975 packages in KAC beyond the currently approved 15 years. A key element of this effort is developing a better understanding of degradation of the fiberboard assembly under storage conditions. This degradation is influenced greatly by the moisture content of the fiberboard, which is not well characterized on an individual package basis.Two efforts have been undertaken to better understand the levels and behavior of moisture within the fiberboard assemblies of the 9975 shipping package. In the first effort, an initial survey of humidity andmore » temperature in the upper air space of 26 packages stored in KAC was made. The data collected within this first effort help to illustrate how the upper air space humidity varies with the local ambient temperature and package heat load. In the second effort, direct measurements of two test packages are providing a correlation between humidity and fiberboard moisture levels within the package, and variations in moisture throughout the fiberboard assembly. This effort has examined packages with cane fiberboard and internal heat levels of 5 and 10W to date. Additional testing is expected to include 15 and 19W heat levels, and then repeat the same four heat levels with softwood fiberboard assemblies. This report documents the data collected to date within these two efforts.« less

Pushing Boreal Headwaters: Responses of Dissolved Organic Carbon to Increased Hydro-Meteorological Forcing by Forest Harvesting

NASA Astrophysics Data System (ADS)

Schelker, J.; Grabs, T. J.; Bishop, K. H.; Laudon, H.

2012-12-01

Concentrations of dissolved organic carbon (DOC) in stream water show large variations as a response to disturbances such as forestry operations. We used a paired catchment experiment in northern Sweden which shows well quantified increases of DOC concentrations and C-exports as a result of forest harvesting. To identify the drivers of these increases, a physically-based process model (Riparian Flow Integration Model, RIM) was used to inversely simulate the DOC availability in the peat-rich riparian soils of the catchments. DOC availability in soils followed a seasonal signal paralleling the seasonality of soil-temperatures (min: February; max: August) during 2005-2011. Further, high-frequency event sampling of DOC during spring and summer seasons of 2007, 2008 and 2009, respectively, revealed that event size acted as a secondary control of DOC in streams: Spring snowmelt events (as well as one major event in 2009) showed clockwise hysteresis, whereas minor runoff episodes during summer (when DOC availability in soils was highest) were characterized by a counterclockwise behavior. The higher hydro-meteorological forcing consisting of increases of soil temperature and soil moisture after the forest removal governed additional increases in DOC availability in soils. The higher DOC concentrations observed in streams after forest harvesting can therefore be ascribed to i) the increased climatic forcing comprising higher water flows through riparian soils, ii) increased soil temperatures and soil moisture, respectively, favoring an increased production of DOC, and iii) additional variation by event size. Overall these results underline the large impact of forestry operations on stream water quality as well as DOC exports leaving managed boreal forests. Simulated and measured soil water TOC concentration profiles within the three Balsjö catchments (CC-4 = clear-cut with 67% harvest; NO-5 = 35% harvest; NR-7 = northern reference). The simulated curves represent the inversely modeled soil profiles using the average f-parameter calculated for August 2009 for each catchment. Measured values represent TOC concentrations of soil water sampled in mid August 2009. Sample numbers (soil depth in bracket) are given as: n (-0.2m) = 16; n (-0.6m) = 17; n (-0.9m) = 15. Horizontal whiskers indicate the standard deviation of measured values for each soil depth.

tscvh R Package: Computational of the two samples test on microarray-sequencing data

NASA Astrophysics Data System (ADS)

Fajriyah, Rohmatul; Rosadi, Dedi

2017-12-01

We present a new R package, a tscvh (two samples cross-variance homogeneity), as we called it. This package is a software of the cross-variance statistical test which has been proposed and introduced by Fajriyah ([3] and [4]), based on the cross-variance concept. The test can be used as an alternative test for the significance difference between two means when sample size is small, the situation which is usually appeared in the bioinformatics research. Based on its statistical distribution, the p-value can be also provided. The package is built under a homogeneity of variance between samples.

Effect on moisture permeability of typewriting on unit dose package surfaces.

PubMed

Rackson, J T; Zellhofer, M J; Birmingham, P H

1984-10-01

The effects of typewriting on labels of two unit dose packages with respect to moisture permeability were examined. Using an electric typewriter, a standard label format was imprinted on two different types of class A unit dose packages: (1) a heat-sealed paper-backed foil and cellofilm strip pouch, and (2) a copolyester and polyethylene multiple-cup blister with a heat-sealed paper-backed foil and cellofilm cover. The labels were typed at various typing-element impact settings. The official USP test for water permeation was then performed on typed packages and untyped control packages. The original untyped packages were confirmed to be USP class A quality. The packages for which successively harder impact settings were used showed a corresponding increase in moisture permeability. This resulted in a lowering of USP package ratings from class A to class B and D, some of which would be unsuitable for use in any unit dose system under current FDA repackaging standards. Typing directly onto the label of a unit dose package before it is sealed will most likely damage the package and possibly make it unfit for use. Pharmacists who must type labels for the unit dose packages studied should use the lowest possible typewriter impact setting and test for damage using the USP moisture-permeation test.

Uranium resource assessment through statistical analysis of exploration geochemical and other data. Final report. [Codes EVAL, SURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koch, G.S. Jr.; Howarth, R.J.; Schuenemeyer, J.H.

1981-02-01

We have developed a procedure that can help quadrangle evaluators to systematically summarize and use hydrogeochemical and stream sediment reconnaissance (HSSR) and occurrence data. Although we have not provided an independent estimate of uranium endowment, we have devised a methodology that will provide this independent estimate when additional calibration is done by enlarging the study area. Our statistical model for evaluation (system EVAL) ranks uranium endowment for each quadrangle. Because using this model requires experience in geology, statistics, and data analysis, we have also devised a simplified model, presented in the package SURE, a System for Uranium Resource Evaluation. Wemore » have developed and tested these models for the four quadrangles in southern Colorado that comprise the study area; to investigate their generality, the models should be applied to other quandrangles. Once they are calibrated with accepted uranium endowments for several well-known quadrangles, the models can be used to give independent estimates for less-known quadrangles. The point-oriented models structure the objective comparison of the quandrangles on the bases of: (1) Anomalies (a) derived from stream sediments, (b) derived from waters (stream, well, pond, etc.), (2) Geology (a) source rocks, as defined by the evaluator, (b) host rocks, as defined by the evaluator, and (3) Aerial radiometric anomalies.« less

Healthy e-health? Think 'environmental e-health'!

PubMed

Scott, Richard E; Saunders, Chad; Palacios, Moné; Nguyen, Duyen Thi Kim; Ali, Sajid

2010-01-01

The Environmental e-Health Research and Training Program has completed its scoping study to understand the breadth of a new field of research: Environmental e-Health. Nearly every aspect of modern life is associated, directly or indirectly, with application of technology, from a cup of coffee, through transportation to and from work, to appliances in the home and industrial activities. In recent decades the rapidly increasing application of information and communications technologies (ICT) has added to the cacophony of technological 'noise' around us. Research has shown that technology use, including ICTs, has impact upon the environment. Studying environmental impact in such a complex global setting is daunting. e-Health is now being used as a convenient microcosm of ICT application within which to study these impacts, and is particularly poignant given that e-Health's environmental harms conflict with its noble goals of 'doing no harm'. The study has identified impacts, both benefits and harms in all three life-cycle phases for e-Health: up-stream (materials extraction, manufacturing, packaging, distribution), mid-stream (use period), and down-stream (end-of-life processes--disposal, recycling). In addition the literature shows that a holistic 'Life Cycle Assessment' approach is essential to understand the complexity of the setting, and determine the true balance between total harms and total benefits, and for whom.

Streaming support for data intensive cloud-based sequence analysis.

PubMed

Issa, Shadi A; Kienzler, Romeo; El-Kalioby, Mohamed; Tonellato, Peter J; Wall, Dennis; Bruggmann, Rémy; Abouelhoda, Mohamed

2013-01-01

Cloud computing provides a promising solution to the genomics data deluge problem resulting from the advent of next-generation sequencing (NGS) technology. Based on the concepts of "resources-on-demand" and "pay-as-you-go", scientists with no or limited infrastructure can have access to scalable and cost-effective computational resources. However, the large size of NGS data causes a significant data transfer latency from the client's site to the cloud, which presents a bottleneck for using cloud computing services. In this paper, we provide a streaming-based scheme to overcome this problem, where the NGS data is processed while being transferred to the cloud. Our scheme targets the wide class of NGS data analysis tasks, where the NGS sequences can be processed independently from one another. We also provide the elastream package that supports the use of this scheme with individual analysis programs or with workflow systems. Experiments presented in this paper show that our solution mitigates the effect of data transfer latency and saves both time and cost of computation.

An Experiment to Evaluate Skylab Earth Resources Sensors for Detection of the Gulf Stream. [Straits of Florida

NASA Technical Reports Server (NTRS)

Maul, G. A. (Principal Investigator); Gordon, H. R.; Baig, S. R.; Mccaslin, M.; Devivo, R. J.

1976-01-01

The author has identified the following significant results. An experiment to evaluate the Skylab earth resources package for observing ocean currents was performed in the Straits of Florida in January 1974. Data from the S190 photographic facility, S191 spectroradiometer and S192 multispectral scanner, were compared with surface observations. The anticyclonic edge of the Gulf Stream could be identified in the Skylab S190A and B photographs, but the cyclonic edge was obscured by clouds. The aircraft photographs were judged not useful for spectral analysis because vignetting caused the blue/green ratios to be dependent on the position in the photograph. The spectral measurement technique could not identify the anticyclonic front, but mass of Florida Bay water which was in the process of flowing into the Straits could be identified and classified. Monte Carlo simulations of the visible spectrum showed that the aerosol concentration could be estimated and a correction technique was devised.

Materials in the U.S. Municipal Waste Stream, 1960 to 2012 (in tons)

EPA Pesticide Factsheets

The U.S. Environmental Protection Agency (EPA) has collected and reported data on the generation and disposal of waste in the United States for more than 30 years. We use this information to measure the success of waste reduction and recycling programs across the country. Our trash, or municipal solid waste (MSW), is made up of the things we commonly use and then throw away. These materials include items such as packaging, food scraps, grass clippings, sofas, computers, tires, and refrigerators. MSW does not include industrial, hazardous, or construction waste. The data in Materials and Products in the Municipal Waste Stream, 1960 to 2012, provides estimated data in thousands of tons discarded after recycling and compost recovery for the years 1960, 1970, 1980, 1990, 2000, 2005, 2008, 2010, 2011, and 2012. In this data set, discards include combustion with energy recovery. This data table does not include construction & demolition debris, industrial process wastes, or certain other wastes. Details may not add to totals due to rounding.

Development of an e-VLBI Data Transport Software Suite with VDIF

NASA Technical Reports Server (NTRS)

Sekido, Mamoru; Takefuji, Kazuhiro; Kimura, Moritaka; Hobiger, Thomas; Kokado, Kensuke; Nozawa, Kentarou; Kurihara, Shinobu; Shinno, Takuya; Takahashi, Fujinobu

2010-01-01

We have developed a software library (KVTP-lib) for VLBI data transmission over the network with the VDIF (VLBI Data Interchange Format), which is the newly proposed standard VLBI data format designed for electronic data transfer over the network. The software package keeps the application layer (VDIF frame) and the transmission layer separate, so that each layer can be developed efficiently. The real-time VLBI data transmission tool sudp-send is an application tool based on the KVTP-lib library. sudp-send captures the VLBI data stream from the VSI-H interface with the K5/VSI PC-board and writes the data to file in standard Linux file format or transmits it to the network using the simple- UDP (SUDP) protocol. Another tool, sudp-recv , receives the data stream from the network and writes the data to file in a specific VLBI format (K5/VSSP, VDIF, or Mark 5B). This software system has been implemented on the Wettzell Tsukuba baseline; evaluation before operational employment is under way.

Comparative Effects of Two Modes of Computer-Assisted Instructional Package on Solid Geometry Achievement

ERIC Educational Resources Information Center

Gambari, Isiaka Amosa; Ezenwa, Victoria Ifeoma; Anyanwu, Romanus Chogozie

2014-01-01

The study examined the effects of two modes of computer-assisted instructional package on solid geometry achievement amongst senior secondary school students in Minna, Niger State, Nigeria. Also, the influence of gender on the performance of students exposed to CAI(AT) and CAI(AN) packages were examined. This study adopted a pretest-posttest…

Validation of eDNA markers for New Zealand mudsnail surveillance and initial eDNA monitoring at Mississippi River Basin sites

USGS Publications Warehouse

Merkes, Christopher; Turnquist, Keith N.; Rees, Christopher B.; Amberg, Jon J.

2015-01-01

The duplex assay was chosen as the most efficient assay and was used at the Upper Midwest Environmental Sciences Center to analyze triplicate samples from 29 streams in Wisconsin, 8 streams in Illinois, and 8 streams in Iowa. In order to verify results, additional triplicate samples were collected from two of the streams in Iowa and two of the streams in Wisconsin for analysis at the Molecular Conservation Genetics Laboratory. All samples at all sites were negative for NZMS DNA.

Face perception is tuned to horizontal orientation in the N170 time window.

PubMed

Jacques, Corentin; Schiltz, Christine; Goffaux, Valerie

2014-02-07

The specificity of face perception is thought to reside both in its dramatic vulnerability to picture-plane inversion and its strong reliance on horizontally oriented image content. Here we asked when in the visual processing stream face-specific perception is tuned to horizontal information. We measured the behavioral performance and scalp event-related potentials (ERP) when participants viewed upright and inverted images of faces and cars (and natural scenes) that were phase-randomized in a narrow orientation band centered either on vertical or horizontal orientation. For faces, the magnitude of the inversion effect (IE) on behavioral discrimination performance was significantly reduced for horizontally randomized compared to vertically or nonrandomized images, confirming the importance of horizontal information for the recruitment of face-specific processing. Inversion affected the processing of nonrandomized and vertically randomized faces early, in the N170 time window. In contrast, the magnitude of the N170 IE was much smaller for horizontally randomized faces. The present research indicates that the early face-specific neural representations are preferentially tuned to horizontal information and offers new perspectives for a description of the visual information feeding face-specific perception.

Jump-and-return sandwiches: A new family of binomial-like selective inversion sequences with improved performance

NASA Astrophysics Data System (ADS)

Brenner, Tom; Chen, Johnny; Stait-Gardner, Tim; Zheng, Gang; Matsukawa, Shingo; Price, William S.

2018-03-01

A new family of binomial-like inversion sequences, named jump-and-return sandwiches (JRS), has been developed by inserting a binomial-like sequence into a standard jump-and-return sequence, discovered through use of a stochastic Genetic Algorithm optimisation. Compared to currently used binomial-like inversion sequences (e.g., 3-9-19 and W5), the new sequences afford wider inversion bands and narrower non-inversion bands with an equal number of pulses. As an example, two jump-and-return sandwich 10-pulse sequences achieved 95% inversion at offsets corresponding to 9.4% and 10.3% of the non-inversion band spacing, compared to 14.7% for the binomial-like W5 inversion sequence, i.e., they afforded non-inversion bands about two thirds the width of the W5 non-inversion band.

Effects of groundwater pumping in the lower Apalachicola-Chattahoochee-Flint River basin

USGS Publications Warehouse

Jones, L. Elliott

2012-01-01

USGS developed a groundwater-flow model of the Upper Floridan aquifer in lower Apalachicola-Chattahoochee-Flint River basin in southwest Georgia and adjacent parts of Alabama and Florida to determine the effect of agricultural groundwater pumping on aquifer/stream flow within the basin. Aquifer/stream flow is the sum of groundwater outflow to and inflow from streams, and is an important consideration for water managers in the development of water-allocation and operating plans. Specifically, the model was used to evaluate how agricultural pumping relates to 7Q10 low streamflow, a statistical low flow indicative of drought conditions that would occur during seven consecutive days, on average, once every 10 years. Argus ONETM, a software package that combines a geographic information system (GIS) and numerical modeling in an Open Numerical Environment, facilitated the design of a detailed finite-element mesh to represent the complex geometry of the stream system in the lower basin as a groundwater-model boundary. To determine the effects on aquifer/stream flow of pumping at different locations within the model area, a pumping rate equivalent to a typical center-pivot irrigation system (50,000 ft3/d) was applied individually at each of the 18,951 model nodes in repeated steady-state simulations that were compared to a base case representing drought conditions during October 1999. Effects of nodal pumping on aquifer/stream flow and other boundary flows, as compared with the base-case simulation, were computed and stored in a response matrix. Queries to the response matrix were designed to determine the sensitivity of targeted stream reaches to agricultural pumping. Argus ONE enabled creation of contour plots of query results to illustrate the spatial variation across the model area of simulated aquifer/streamflow reductions, expressed as a percentage of the long-term 7Q10 low streamflow at key USGS gaging stations in the basin. These results would enable water managers to assess the relative impact of agricultural pumping and drought conditions on streamflow throughout the basin, and to develop mitigation strategies to conserve water resources and preserve aquatic habitat.

Two Visual Pathways in Primates Based on Sampling of Space: Exploitation and Exploration of Visual Information.

PubMed

Sheth, Bhavin R; Young, Ryan

2016-01-01

Evidence is strong that the visual pathway is segregated into two distinct streams-ventral and dorsal. Two proposals theorize that the pathways are segregated in function: The ventral stream processes information about object identity, whereas the dorsal stream, according to one model, processes information about either object location, and according to another, is responsible in executing movements under visual control. The models are influential; however recent experimental evidence challenges them, e.g., the ventral stream is not solely responsible for object recognition; conversely, its function is not strictly limited to object vision; the dorsal stream is not responsible by itself for spatial vision or visuomotor control; conversely, its function extends beyond vision or visuomotor control. In their place, we suggest a robust dichotomy consisting of a ventral stream selectively sampling high-resolution/ focal spaces, and a dorsal stream sampling nearly all of space with reduced foveal bias. The proposal hews closely to the theme of embodied cognition: Function arises as a consequence of an extant sensory underpinning. A continuous, not sharp, segregation based on function emerges, and carries with it an undercurrent of an exploitation-exploration dichotomy. Under this interpretation, cells of the ventral stream, which individually have more punctate receptive fields that generally include the fovea or parafovea, provide detailed information about object shapes and features and lead to the systematic exploitation of said information; cells of the dorsal stream, which individually have large receptive fields, contribute to visuospatial perception, provide information about the presence/absence of salient objects and their locations for novel exploration and subsequent exploitation by the ventral stream or, under certain conditions, the dorsal stream. We leverage the dichotomy to unify neuropsychological cases under a common umbrella, account for the increased prevalence of multisensory integration in the dorsal stream under a Bayesian framework, predict conditions under which object recognition utilizes the ventral or dorsal stream, and explain why cells of the dorsal stream drive sensorimotor control and motion processing and have poorer feature selectivity. Finally, the model speculates on a dynamic interaction between the two streams that underscores a unified, seamless perception. Existing theories are subsumed under our proposal.

Inverse coupling of DOC and nitrate export from soils and streams

NASA Astrophysics Data System (ADS)

Goodale, Christine

2013-04-01

Over the last two decades, nitrate concentrations in surface waters have decreased across the Northeastern United States and parts of northern Europe. Many hypotheses have been proposed to explain this decrease, but the cause remains unclear. One control may be associated with increasing abundance of dissolved organic carbon (DOC), which in turn may be a result of soil recovery from acidification. Compared across catchments, surface water NO3- decreases sharply with increasing DOC concentration. Here, we used measurements of soil and solution nitrate, DOC, and their isotopic composition (13C-DOC, 15N- and 18O-NO3) to test several related hypotheses that changing acidification affects the release of DOC and bio-available DOC (bDOC) from soil, and that variation in stocks of soil C and release of bDOC partly control NO3- export from forested catchments in New York State, USA. We examined whether DOC and NO3- are both driven by soil C processes that produce inverse coupling at the scale of soil cores as well as across catchments, through comparison of soil and surface water chemistry across nine catchments selected from long-term monitoring networks in the Catskill and Adirondack Mountains. In addition, we conducted a series of soil core leaching experiments to examine the role of acidification and recovery in driving the net production of DOC and NO3- from soils. Over 8 months, soil cores were leached biweekly with simulated rainfall solutions of varying pH (3.6 to 7.0) from additions of H2SO4, CaCO3 and NaOH. These experiments did not yield a pH-induced change in DOC quantity, but did show a change in DOC quality, in that acidified cores released more bio-available DOC with less depleted 13C-DOC than cores with experimentally increased pH. All cores leached substantial amounts of nitrate. Together, these lab- and field comparisons are being used to identify the role of soil production and consumption processes in driving cross-watershed differences in DOC and NO3- loss, or whether other factors (e.g., riparian, in-stream or hydrologic processes) likely explain this relationship.

78 FR 32686 - Final Supplemental Environmental Impact Statement on the Issuance of Annual Regulations...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-31

... process. (2) Frequency of review and adoption of duck regulatory packages. Duck regulatory packages are the set of framework regulations that apply to the general duck hunting seasons. Packages include..., we present two alternatives regarding how frequently duck regulatory packages should be reviewed and...

MATHEMATICAL ROUTINES FOR ENGINEERS AND SCIENTISTS

NASA Technical Reports Server (NTRS)

Kantak, A. V.

1994-01-01

The purpose of this package is to provide the scientific and engineering community with a library of programs useful for performing routine mathematical manipulations. This collection of programs will enable scientists to concentrate on their work without having to write their own routines for solving common problems, thus saving considerable amounts of time. This package contains sixteen subroutines. Each is separately documented with descriptions of the invoking subroutine call, its required parameters, and a sample test program. The functions available include: maxima, minima, and sort of vectors; factorials; random number generator (uniform or Gaussian distribution); complimentary error function; fast Fourier Transformation; Simpson's Rule integration; matrix determinate and inversion; Bessel function (J Bessel function for any order, and modified Bessel function for zero order); roots of a polynomial; roots of non-linear equation; and the solution of first order ordinary differential equations using Hamming's predictor-corrector method. There is also a subroutine for using a dot matrix printer to plot a given set of y values for a uniformly increasing x value. This package is written in FORTRAN 77 (Super Soft Small System FORTRAN compiler) for batch execution and has been implemented on the IBM PC computer series under MS-DOS with a central memory requirement of approximately 28K of 8 bit bytes for all subroutines. This program was developed in 1986.

Quantum supercharger library: hyper-parallelism of the Hartree-Fock method.

PubMed

Fernandes, Kyle D; Renison, C Alicia; Naidoo, Kevin J

2015-07-05

We present here a set of algorithms that completely rewrites the Hartree-Fock (HF) computations common to many legacy electronic structure packages (such as GAMESS-US, GAMESS-UK, and NWChem) into a massively parallel compute scheme that takes advantage of hardware accelerators such as Graphical Processing Units (GPUs). The HF compute algorithm is core to a library of routines that we name the Quantum Supercharger Library (QSL). We briefly evaluate the QSL's performance and report that it accelerates a HF 6-31G Self-Consistent Field (SCF) computation by up to 20 times for medium sized molecules (such as a buckyball) when compared with mature Central Processing Unit algorithms available in the legacy codes in regular use by researchers. It achieves this acceleration by massive parallelization of the one- and two-electron integrals and optimization of the SCF and Direct Inversion in the Iterative Subspace routines through the use of GPU linear algebra libraries. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

Thermal conductivity and emissivity measurements of uranium carbides

NASA Astrophysics Data System (ADS)

Corradetti, S.; Manzolaro, M.; Andrighetto, A.; Zanonato, P.; Tusseau-Nenez, S.

2015-10-01

Thermal conductivity and emissivity measurements on different types of uranium carbide are presented, in the context of the ActiLab Work Package in ENSAR, a project within the 7th Framework Program of the European Commission. Two specific techniques were used to carry out the measurements, both taking place in a laboratory dedicated to the research and development of materials for the SPES (Selective Production of Exotic Species) target. In the case of thermal conductivity, estimation of the dependence of this property on temperature was obtained using the inverse parameter estimation method, taking as a reference temperature and emissivity measurements. Emissivity at different temperatures was obtained for several types of uranium carbide using a dual frequency infrared pyrometer. Differences between the analyzed materials are discussed according to their compositional and microstructural properties. The obtainment of this type of information can help to carefully design materials to be capable of working under extreme conditions in next-generation ISOL (Isotope Separation On-Line) facilities for the generation of radioactive ion beams.

Which community care for patients with schizophrenic disorders? Packages of care provided by Departments of Mental Health in Lombardy (Italy).

PubMed

Lora, Antonio; Cosentino, Ugo; Gandini, Anna; Zocchetti, Carlo

2007-01-01

The treatment of schizophrenic disorders is the most important challenge for community care. The analysis focuses on packages of care provided to 23.602 patients with a ICD-10 diagnosis of schizophrenic disorder and treated in 2001 by the Departments of Mental Health in Lombardy, Italy. Packages of care refer to a mix of treatments provided to each patient during the year by different settings. Direct costs of the packages were calculated. Linear Discriminant Analysis has been used to link socio-demographic and diagnostic sub-groups of the patients to packages of care. People with schizophrenic disorders received relatively few care packages: only four packages involved more than 5%. Two thirds of the patients received only care provided by Community Mental Health Centres. In the other two packages with a percentage over 5%, the activity was provided by CMHCs, jointly with General Hospitals or Day Care Facilities. Complex care packages were rare (only 6%). As well as the intensity, also the variety of care provided by CMHCs increased with the complexity of care packages. In Lombardy more than half of the resources were spent for schizophrenia. The range of the costs per package was very wide. LDA failed to link characteristics of the patients to packages of care. Care packages are useful tools to understand better how mental health system works, how resources have been spent and to point out problems in the quality of care.

An image-processing software package: UU and Fig for optical metrology applications

NASA Astrophysics Data System (ADS)

Chen, Lujie

2013-06-01

Modern optical metrology applications are largely supported by computational methods, such as phase shifting [1], Fourier Transform [2], digital image correlation [3], camera calibration [4], etc, in which image processing is a critical and indispensable component. While it is not too difficult to obtain a wide variety of image-processing programs from the internet; few are catered for the relatively special area of optical metrology. This paper introduces an image-processing software package: UU (data processing) and Fig (data rendering) that incorporates many useful functions to process optical metrological data. The cross-platform programs UU and Fig are developed based on wxWidgets. At the time of writing, it has been tested on Windows, Linux and Mac OS. The userinterface is designed to offer precise control of the underline processing procedures in a scientific manner. The data input/output mechanism is designed to accommodate diverse file formats and to facilitate the interaction with other independent programs. In terms of robustness, although the software was initially developed for personal use, it is comparably stable and accurate to most of the commercial software of similar nature. In addition to functions for optical metrology, the software package has a rich collection of useful tools in the following areas: real-time image streaming from USB and GigE cameras, computational geometry, computer vision, fitting of data, 3D image processing, vector image processing, precision device control (rotary stage, PZT stage, etc), point cloud to surface reconstruction, volume rendering, batch processing, etc. The software package is currently used in a number of universities for teaching and research.

Innovations in the Assay of Un-Segregated Multi-Isotopic Grade TRU Waste Boxes with SuperHENC and FRAM Technology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Simpson, A. P.; Barber, S.; Abdurrahman, N. M.

2006-07-01

The Super High Efficiency Neutron Coincidence Counter (SuperHENC) was originally developed by BIL Solutions Inc., Los Alamos National Laboratory (LANL) and Rocky Flats Environmental Technology Site (RFETS) for assay of transuranic (TRU) waste in Standard Waste Boxes (SWB) at Rocky Flats. This mobile system was a key component in the shipment of over 4,000 SWBs to the Waste Isolation Pilot Plant (WIPP) in Carlsbad, New Mexico. The system was WIPP certified in 2001 and operated at the site for four years. The success of this system, a passive neutron coincidence counter combined with high resolution gamma spectroscopy, led to themore » order of two new units, delivered to Hanford in 2004. Several new challenges were faced at Hanford: For example, the original RFETS system was calibrated for segregated waste streams such that metals, plastics, wet combustibles and dry combustibles were separated by 'Item Description Codes' prior to assay. Furthermore, the RFETS mission of handling only weapons grade plutonium, enabled the original SuperHENC to benefit from the use of known Pu isotopics. Operations at Hanford, as with most other DOE sites, generate un-segregated waste streams, with a wide diversity of Pu isotopics. Consequently, the new SuperHENCs are required to deal with new technical challenges. The neutron system's software and calibration methodology have been modified to encompass these new requirements. In addition, PC-FRAM software has been added to the gamma system, providing a robust isotopic measurement capability. Finally a new software package has been developed that integrates the neutron and gamma data to provide a final assay results and analysis report. The new system's performance has been rigorously tested and validated against WIPP quality requirements. These modifications, together with the mobile platform, make the new SuperHENC far more versatile in handling diverse waste streams and allow for rapid redeployment around the DOE complex. (authors)« less

Evaluation of Impinging Stream Vortex Chamber Concepts for Liquid Rocket Engine Applications

NASA Technical Reports Server (NTRS)

Trinh, Huu P.; Bullard, Brad; Kopicz, Charles; Michaels, Scott; Turner, James (Technical Monitor)

2001-01-01

To pursue technology developments for future launch vehicles, NASA/Marshall Space Flight Center (MSFC) is examining vortex chamber concepts for liquid rocket engine applications. Past studies indicated that the vortex chamber schemes potentially have a number of advantages over conventional chamber methods. Due to the nature of the vortex flow, relatively cooler propellant streams tend to flow along the chamber wall. Hence, the thruster chamber can be operated without the need of any cooling techniques. This vortex flow also creates strong turbulence, which promotes the propellant mixing process. Consequently, the subject chamber concepts not only offer the system simplicity, but they also would enhance the combustion performance. The test results showed that the chamber performance was markedly high even at a low chamber length-to-diameter ratio (L/D). This incentive can be translated to a convenience in the thrust chamber packaging. Variations of the vortex chamber concepts have been introduced in the past few decades. These investigations include an ongoing work at Orbital Technologies Corporation (ORBITEC). By injecting the oxidizer tangentially at the chamber convergence and fuel axially at the chamber head end, Knuth et al. were able to keep the wall relatively cold. A recent investigation of the low L/D vortex chamber concept for gel propellants was conducted by Michaels. He used both triplet (two oxidizer and one fuel orifices) and unlike impinging schemes to inject propellants tangentially along the chamber wall. Michaels called the subject injection scheme as Impinging Stream Vortex Chamber (ISVC). His preliminary tests showed that high performance, with an Isp efficiency of 92%, can be obtained. MSFC and the U.S. Army are jointly investigating an application of the ISVC concept for the cryogenic oxygen/hydrocarbon propellant system. This vortex chamber concept is currently tested with gel propellants at AMCOM at Redstone Arsenal, Alabama. A version of this concept for the liquid oxygen (LOX)/hydrocarbon fuel (RPM) system has been derived from the one for the gel propellant.

Nitrification-driven forms of nitrogen metabolism in microbial mat communities thriving along an ammonium-enriched subsurface geothermal stream

NASA Astrophysics Data System (ADS)

Nishizawa, Manabu; Koba, Keisuke; Makabe, Akiko; Yoshida, Naohiro; Kaneko, Masanori; Hirao, Shingo; Ishibashi, Jun-ichiro; Yamanaka, Toshiro; Shibuya, Takazo; Kikuchi, Tohru; Hirai, Miho; Miyazaki, Junichi; Nunoura, Takuro; Takai, Ken

2013-07-01

We report here the concurrence and interaction among forms of nitrogen metabolism in thermophilic microbial mat communities that developed in an ammonium-abundant subsurface geothermal stream. First, the physical and chemical conditions of the stream water at several representative microbial mat habitats (including upper, middle and downstream sites) were characterized. A thermodynamic calculation using these physical and chemical conditions predicted that nitrification consisting of ammonia and nitrite oxidations would provide one of the largest energy yields of chemolithotrophic metabolisms. Second, near-complete prokaryotic 16S rRNA gene clone analysis was conducted for representative microbial mat communities at the upper, middle and downstream sites. The results indicated a dynamic shift in the 16S rRNA gene phylotype composition through physical and chemical variations of the stream water. The predominant prokaryotic components varied from phylotypes related to hydrogeno (H2)- and thio (S)-trophic Aquificales, thermophilic methanotrophs and putative ammonia-oxidizing Archaea (AOA) located upstream (72 °C) to the phylotypes affiliated with putative AOA and nitrite-oxidizing bacteria (NOB) located at the middle and downstream sites (65 and 57 °C, respectively). In addition, the potential in situ metabolic activities of different forms of nitrogen metabolism were estimated through laboratory experiments using bulk microbial mat communities. Finally, the compositional and isotopic variation in nitrogen compounds was investigated in the stream water flowing over the microbial mats and in the interstitial water inside the mats. Although the stream water was characterized by a gradual decrease in the total ammonia concentration (ΣNH3: the sum of ammonia and ammonium concentrations) and a gradual increase in the total concentration of nitrite and nitrate (NO2- + NO3-), the total inorganic nitrogen concentration (TIN: the sum of ΣNH3, NO2- and NO3- concentrations) was nearly constant (250 μM) throughout the stream. Based on the level of detectable dissolved molecular oxygen (O2) of the stream water (⩾38 μM) along with metabolic measurements, it was predicted that nitrification by thermophilic AOA and NOB components in the microbial mats that were exposed to the stream water would constrain the concentrations and isotopic ratios of ΣNH3, NO2- and NO3- of the stream water. The δ15N value of ΣNH3 increased from 0‰ to 7‰ with decreasing concentration, which was consistent with the previously reported isotopic fractionation for microbial ΣNH3 oxidation. In contrast, the δ15N value of NO2- was 22‰ lighter than that of NO3- in the steam water at the same site, indicating an inverse isotopic fractionation for microbial NO2- oxidation. The variation in concentrations and δ15N values of ΣNH3, NO2- and NO3- was largely explained using a two-step nitrification model, and the apparent nitrogen isotopic fractionations of ΣNH3 oxidation and NO2- oxidation were estimated to be 0.986 and 1.020, respectively. In the interstitial water within the microbial mats, the compositional and isotopic properties of TIN at the downstream site indicated potential denitrification by the anaerobic microbial components. The geochemically deduced transition of microbial nitrogen metabolism was substantiated through cultivation-independent microbiological analyses.

Using a commercial mathematics software package for on-line analysis at the BNL Accelerator Test Facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Malone, R.; Wang, X.J.

BY WRITING BOTH A CUSTOM WINDOWS(NTTM) DYNAMIC LINK LIBRARY AND GENERIC COMPANION SERVER SOFTWARE, THE INTRINSIC FUNCTIONS OF MATHSOFT MATHCAD(TM) HAVE BEEN EXTENDED WITH NEW CAPABILITIES WHICH PERMIT DIRECT ACCESS TO THE CONTROL SYSTEM DATABASES OF BROOKHAVEN NATIONAL LABORATORY ACCELERATOR TEST FACILITY. UNDER THIS SCHEME, A MATHCAD WORKSHEET EXECUTING ON A PERSONAL COMPUTER BECOMES A CLIENT WHICH CAN BOTH IMPORT AND EXPORT DATA TO A CONTROL SYSTEM SERVER VIA A NETWORK STREAM SOCKET CONNECTION. THE RESULT IS AN ALTERNATIVE, MATHEMATICALLY ORIENTED VIEW OF CONTROLLING THE ACCELERATOR INTERACTIVELY.

HepSim: A repository with predictions for high-energy physics experiments

DOE PAGES

Chekanov, S. V.

2015-02-03

A file repository for calculations of cross sections and kinematic distributions using Monte Carlo generators for high-energy collisions is discussed. The repository is used to facilitate effective preservation and archiving of data from theoretical calculations and for comparisons with experimental data. The HepSim data library is publicly accessible and includes a number of Monte Carlo event samples with Standard Model predictions for current and future experiments. The HepSim project includes a software package to automate the process of downloading and viewing online Monte Carlo event samples. Data streaming over a network for end-user analysis is discussed.

Evaluation of Standard Loose Plastic Packaging for the Management of Rhyzopertha dominica (F.) (Coleoptera: Bostrichidae) and Tribolium castaneum (Herbst) (Coleoptera: Tenebriondiae)

PubMed Central

Hassan, Muhammad Waqar; Gulraize; Ali, Usman; Ur Rehman, Fazal; Najeeb, Hafsa; Sohail, Maryam; Irsa, Bakhtawar; Muzaffar, Zubaria; Chaudhry, Muhammad Shafiq

2016-01-01

Three standard foodstuff plastic packaging namely polyethylene (PE), polypropylene (PP), and polyvinylchloride (PVC) were evaluated for management of lesser grain borer Rhyzopertha dominica (F.) (Coleoptera: Bostrichidae) and red flour beetle Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae). Resistance parameters in packaging were recorded as punctures, holes, penetrations, sealing defects, and invasions with two thicknesses and tested for two lengths of time. Damages like punctures, holes and penetrations by both insects were more in PE packaging however R. dominica made more penetrations in PP than in PE. For both insects sealing defects and invasions were predominant in PVC than in others. Thickness did not affect significantly damage types but significantly more holes and penetrations by R. dominica were in less thickness. Punctures and holes by R. dominica were more after less time period but other damages in packaging were more after more time period. However for T. castaneum all sorts of damages were seen more after more time period. Overall categorization between two insects showed R. dominica made more penetrations and T. castaneum made more invasions compared with their counterparts. Pictures were taken under camera fitted microscope to magnify punctures and holes in different packaging and thicknesses. Insect mortality due to phosphine was more in PP and PE packaging and least in PVC packaging and thickness effect was marginal. T. castaneum mortality was significantly more after 48 h than after 24 h. Damages extent in packaging and fumigation results showed PP to be the best of three packaging materials to manage these insects. PMID:27638958

Exploiting spatial degrees of freedom for high data rate ultrasound communication with implantable devices

NASA Astrophysics Data System (ADS)

Wang, Max L.; Arbabian, Amin

2017-09-01

We propose and demonstrate an ultrasonic communication link using spatial degrees of freedom to increase data rates for deeply implantable medical devices. Low attenuation and millimeter wavelengths make ultrasound an ideal communication medium for miniaturized low-power implants. While a small spectral bandwidth has drastically limited achievable data rates in conventional ultrasonic implants, a large spatial bandwidth can be exploited by using multiple transducers in a multiple-input/multiple-output system to provide spatial multiplexing gain without additional power, larger bandwidth, or complicated packaging. We experimentally verify the communication link in mineral oil with a transmitter and a receiver 5 cm apart, each housing two custom-designed mm-sized piezoelectric transducers operating at the same frequency. Two streams of data modulated with quadrature phase-shift keying at 125 kbps are simultaneously transmitted and received on both channels, effectively doubling the data rate to 250 kbps with a measured bit error rate below 10-4. We also evaluate the performance and robustness of the channel separation network by testing the communication link after introducing position offsets. These results demonstrate the potential of spatial multiplexing to enable more complex implant applications requiring higher data rates.

Evaluating Penetration Ability of Plodia interpunctella (Hübner) (Lepidoptera: Pyralidae) Larvae into Multilayer Polypropylene Packages.

PubMed

Scheff, Deanna S; Sehgal, Blossom; Subramanyam, Bhadriraju

2018-04-18

The larvae of the Indian meal moth, Plodia interpunctella (Hübner), can invade or penetrate packaging materials and infest food products. Energy bars with three polypropylene packaging types were challenged with eggs (first instars), third instars, and fifth instars of P. interpunctella to determine package resistance at 28 °C and 65% r.h. The packing types were also challenged with two male and two female pupae of P. interpunctella under similar conditions in order to determine which package provided the greatest protection against larval penetration. Samples infested with eggs, third instars, and pupae were evaluated after 21 days and 42 days to count the number of larvae, pupae, and adults found inside the packages. Packages challenged with fifth instars were observed after 21 days to count the number of larvae, pupae, and adults inside each package. The number and diameter of the holes were determined in each package, followed by the amount of damage sustained to the energy bar. Third and fifth instars showed a higher tendency to penetrate all of the packaging types. First instars showed a reduction in package penetration ability compared with third and fifth instars. The increase in exposure time resulted in an increase in the damage sustained to the energy bars. Among packaging types, the thickest package (Test A) was most resilient to penetration by all of the larval stages. In conclusion, energy bar manufacturers need to invest more effort into improving packaging designs, creating thicker gauge films, or advancing odor barrier technology, in order to prevent penetration and infestation by P. interpunctella larvae.

gr-MRI: A software package for magnetic resonance imaging using software defined radios.

PubMed

Hasselwander, Christopher J; Cao, Zhipeng; Grissom, William A

2016-09-01

The goal of this work is to develop software that enables the rapid implementation of custom MRI spectrometers using commercially-available software defined radios (SDRs). The developed gr-MRI software package comprises a set of Python scripts, flowgraphs, and signal generation and recording blocks for GNU Radio, an open-source SDR software package that is widely used in communications research. gr-MRI implements basic event sequencing functionality, and tools for system calibrations, multi-radio synchronization, and MR signal processing and image reconstruction. It includes four pulse sequences: a single-pulse sequence to record free induction signals, a gradient-recalled echo imaging sequence, a spin echo imaging sequence, and an inversion recovery spin echo imaging sequence. The sequences were used to perform phantom imaging scans with a 0.5Tesla tabletop MRI scanner and two commercially-available SDRs. One SDR was used for RF excitation and reception, and the other for gradient pulse generation. The total SDR hardware cost was approximately $2000. The frequency of radio desynchronization events and the frequency with which the software recovered from those events was also measured, and the SDR's ability to generate frequency-swept RF waveforms was validated and compared to the scanner's commercial spectrometer. The spin echo images geometrically matched those acquired using the commercial spectrometer, with no unexpected distortions. Desynchronization events were more likely to occur at the very beginning of an imaging scan, but were nearly eliminated if the user invoked the sequence for a short period before beginning data recording. The SDR produced a 500kHz bandwidth frequency-swept pulse with high fidelity, while the commercial spectrometer produced a waveform with large frequency spike errors. In conclusion, the developed gr-MRI software can be used to develop high-fidelity, low-cost custom MRI spectrometers using commercially-available SDRs. Copyright © 2016. Published by Elsevier Inc.

A menu-driven software package of Bayesian nonparametric (and parametric) mixed models for regression analysis and density estimation.

PubMed

Karabatsos, George

2017-02-01

Most of applied statistics involves regression analysis of data. In practice, it is important to specify a regression model that has minimal assumptions which are not violated by data, to ensure that statistical inferences from the model are informative and not misleading. This paper presents a stand-alone and menu-driven software package, Bayesian Regression: Nonparametric and Parametric Models, constructed from MATLAB Compiler. Currently, this package gives the user a choice from 83 Bayesian models for data analysis. They include 47 Bayesian nonparametric (BNP) infinite-mixture regression models; 5 BNP infinite-mixture models for density estimation; and 31 normal random effects models (HLMs), including normal linear models. Each of the 78 regression models handles either a continuous, binary, or ordinal dependent variable, and can handle multi-level (grouped) data. All 83 Bayesian models can handle the analysis of weighted observations (e.g., for meta-analysis), and the analysis of left-censored, right-censored, and/or interval-censored data. Each BNP infinite-mixture model has a mixture distribution assigned one of various BNP prior distributions, including priors defined by either the Dirichlet process, Pitman-Yor process (including the normalized stable process), beta (two-parameter) process, normalized inverse-Gaussian process, geometric weights prior, dependent Dirichlet process, or the dependent infinite-probits prior. The software user can mouse-click to select a Bayesian model and perform data analysis via Markov chain Monte Carlo (MCMC) sampling. After the sampling completes, the software automatically opens text output that reports MCMC-based estimates of the model's posterior distribution and model predictive fit to the data. Additional text and/or graphical output can be generated by mouse-clicking other menu options. This includes output of MCMC convergence analyses, and estimates of the model's posterior predictive distribution, for selected functionals and values of covariates. The software is illustrated through the BNP regression analysis of real data.

Microscopic and low Reynolds number flows between two intersecting permeable walls

NASA Astrophysics Data System (ADS)

Egashira, R.; Fujikawa, T.; Yaguchi, H.; Fujikawa, S.

2018-06-01

Two-dimensional Navier–Stokes equations are solved in an analytical way to clarify characteristics of low-Re flows in a microscopic channel consisting of two intersecting permeable walls, the intersection of which is supposed to be a sink or a source. Such flows are, therefore, considered to be an extension of the so-called Jeffery–Hamel flow to the permeable wall case. A set of nonlinear forth-order ordinary differential equations are obtained, and their solutions are sought for the small permeable velocity compared with the main flow one by a perturbation method. The solutions contain the solutions found in the past, such as the flow between two parallel permeable walls studied by Berman and the Jeffery–Hamel flow between the impermeable walls as special cases. Velocity distribution and friction loss in pressure along the main stream are represented in the explicit manner and compared with those of the Jeffery–Hamel flow. Numerical examples show that the wall permeability has a great influence on the friction loss. Furthermore, it is shown that the convergent main flow accompanied with the fluid addition through the walls is inversely directed away from the origin due to the balance of the main flow and the permeable one, while the flow accompanied with fluid suction is just directed toward the origin regardless of conditions.

Basin Hydrology and Substrate Controls on Mountain Stream Morphology: Highlands of Southeastern West Virginia

NASA Astrophysics Data System (ADS)

Burks, T. W.; Springer, G. S.

2004-12-01

Evolution of mountain drainage basins across a broad spectrum of geologic, tectonic, and climatic conditions is an active area of investigation in the field of fluvial geomorphology. Mountain streams are typified by steep channel gradients (>0.002), high channel roughness, rapid changes in drainage area, and high spatial and low temporal variability in channel morphology, leading to complexities in landscape modeling relative to their lowland counterparts. Factors driving this recent investigative trend are the refinement and generation of digital topographic data and terrain analysis software, and more importantly, the demand for a multidiscipline approach to the assessment, restoration, and management of entire watersheds. A significant volume of research has been conducted in mountain drainage basins of the western United States, with particular attention paid to tectonically active regions of the Pacific Northwest, which also contain federally listed threatened and endangered salmonid populations. Brook trout (Salvelinus fontinalis), native to the highlands of the eastern margin of the Appalachian Plateau are impacted by acid rain deposition; however, geomorphic research into landscape modeling, applicable to restoration and management of lotic ecosystems of the eastern United States, is comparatively lacking. This current research explores the potential for modeling channel morphology in mountain streams; specifically, how downstream trends in channel substrate resistance and unit stream power effect the partitioning of mountain stream morphology along and downstream of the fluvial/colluvial transition. In order to address this issue, two mountain drainage basins in the headwaters of the Gauley River watershed on the Appalachian Plateau of southeastern West Virginia were chosen. The westerly flowing Cranberry (250 sqkm) and Cherry (429 sqkm) rivers incise gently northwestward dipping Carboniferous-aged strata (shale, minor coal, siltstone, sandstone, and conglomerate), with a large percentage of both drainages managed as the Monongahela National Forest. A total of 68 reach-scale (10-20 channel widths) channel surveys were completed in which reach gradient, average bankfull channel widths, and bed surface grain size data were determined. This information was synthesized with data extracted from 10-meter digital elevation models using both RiverTools v. 2.4 and ArcGIS Desktop 8.3 terrain analysis software packages. Surveyed channel reach gradients range from (0.002-0.150 m/m) and are characterized by pool-riffle to cascade and step-pool morphologies, though observed morphology succession is atypical of an equilibrated system. Partitioning in channel morphology succession correlates with both changes in lithology (e.g. siltstone to conglomerate) and the extent of headwater debris flow activity, which reflects a shift in the balance between driving and resisting forces as stream size increases.

New exact solutions for a discrete electrical lattice using the analytical methods

NASA Astrophysics Data System (ADS)

Manafian, Jalil; Lakestani, Mehrdad

2018-03-01

This paper retrieves soliton solutions to an equation in nonlinear electrical transmission lines using the semi-inverse variational principle method (SIVPM), the \\exp(-Ω(ξ)) -expansion method (EEM) and the improved tan(φ/2) -expansion method (ITEM), with the aid of the symbolic computation package Maple. As a result, the SIVPM, EEM and ITEM methods are successfully employed and some new exact solitary wave solutions are acquired in terms of kink-singular soliton solution, hyperbolic solution, trigonometric solution, dark and bright soliton solutions. All solutions have been verified back into their corresponding equations with the aid of the Maple package program. We depicted the physical explanation of the extracted solutions with the choice of different parameters by plotting some 2D and 3D illustrations. Finally, we show that the used methods are robust and more efficient than other methods. More importantly, the solutions found in this work can have significant applications in telecommunication systems where solitons are used to codify data.

Jump-and-return sandwiches: A new family of binomial-like selective inversion sequences with improved performance.

PubMed

Brenner, Tom; Chen, Johnny; Stait-Gardner, Tim; Zheng, Gang; Matsukawa, Shingo; Price, William S

2018-03-01

A new family of binomial-like inversion sequences, named jump-and-return sandwiches (JRS), has been developed by inserting a binomial-like sequence into a standard jump-and-return sequence, discovered through use of a stochastic Genetic Algorithm optimisation. Compared to currently used binomial-like inversion sequences (e.g., 3-9-19 and W5), the new sequences afford wider inversion bands and narrower non-inversion bands with an equal number of pulses. As an example, two jump-and-return sandwich 10-pulse sequences achieved 95% inversion at offsets corresponding to 9.4% and 10.3% of the non-inversion band spacing, compared to 14.7% for the binomial-like W5 inversion sequence, i.e., they afforded non-inversion bands about two thirds the width of the W5 non-inversion band. Copyright © 2018 Elsevier Inc. All rights reserved.