Ontology- and graph-based similarity assessment in biological networks.

PubMed

Wang, Haiying; Zheng, Huiru; Azuaje, Francisco

2010-10-15

A standard systems-based approach to biomarker and drug target discovery consists of placing putative biomarkers in the context of a network of biological interactions, followed by different 'guilt-by-association' analyses. The latter is typically done based on network structural features. Here, an alternative analysis approach in which the networks are analyzed on a 'semantic similarity' space is reported. Such information is extracted from ontology-based functional annotations. We present SimTrek, a Cytoscape plugin for ontology-based similarity assessment in biological networks. http://rosalind.infj.ulst.ac.uk/SimTrek.html francisco.azuaje@crp-sante.lu Supplementary data are available at Bioinformatics online.

78 FR 5801 - Operating Industries, Inc. Superfund Site, Monterey Park, CA; Notice of Proposed CERCLA...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-01-28

..., Inc., Los Feliz Car Wash, Margus Auto Electric Exchange, Inc., Midway Drilling & Pump Company, MK...: American Marble & Onyx Company, Inc., Arroyo Car Wash Corporation, Bay Cities Container Corporation, Brett... Corporation, George J. Peckham, Jr., H.W. Hull & Sons, Inc., Hacienda Car Wash, Inc., Hiro's Transmission, Inc...

Tephrostratigraphy of a Lateglacial lake sediment sequence at Węgliny, southwest Poland

NASA Astrophysics Data System (ADS)

Housley, Rupert A.; MacLeod, Alison; Nalepka, Dorota; Jurochnik, Aleksandra; Masojć, Mirosław; Davies, Lauren; Lincoln, Paul C.; Bronk Ramsey, Christopher; Gamble, Clive S.; Lowe, J. John

2013-10-01

This paper presents the first late Quaternary locality in the present-day territories of Poland where multiple cryptotephra layers have been identified. Located near Węgliny in southwest Poland, study of the Lateglacial gyttja deposits reveals the presence of at least four non-visible tephra horizons. Electron microprobe and laser-ablation ICPMS analysis of glass shards suggests products from at least two Icelandic volcanic centres: Katla and Snæsfellsness. Of particular importance is the discovery of two eruptions believed to originate from the east Eifel volcanic field within the Allerød chronozone. One correlates with the well documented Laacher See Tephra (LST) but the second horizon, herein designated T642/T655 would appear to represent an earlier precursor eruption. The chemical composition of the LST and the precursor tephra both appear to match to the Upper Laacher See Tephra (ULST) phase, which previously was thought to have dispersed not to the northeast but in a southerly direction, towards the Alpine foreland. This indicates the eruption dynamics of the Laacher See are more complex than hitherto recognised.

Tracing the Laacher See Tephra in the varved sediment record of the Trzechowskie palaeolake in central Northern Poland

NASA Astrophysics Data System (ADS)

Wulf, Sabine; Ott, Florian; Słowiński, Michał; Noryśkiewicz, Agnieszka M.; Dräger, Nadine; Martin-Puertas, Celia; Czymzik, Markus; Neugebauer, Ina; Dulski, Peter; Bourne, Anna J.; Błaszkiewicz, Mirosław; Brauer, Achim

2013-09-01

Tephrochronological studies of partly varved sediments of Trzechowskie palaeolake in central Northern Poland led to the finding of the Late Allerød Laacher See Tephra (LST) from the Eifel Volcanic Field for the first time in a very distal site ca 840 km ENE from its volcanic source. The detection of glass shards of the LST involved a comprehensive combination of techniques, i.e. biostratigraphical constrains, high-resolution μ-XRF core scanning and areal μ-XRF mapping of impregnated sediment slabs as well as detailed visual inspection of sediments. The major element chemistry of volcanic glass confirmed the Laacher See Tephra composition in Trzechowskie palaeolake sediments suggesting a deposition from the Middle Laacher See Tephra (MLST-C) or Upper Laacher See Tephra (ULST) dispersal fans. The finding of the LST in this palaeolake enables direct synchronisation with other high-resolution archives in north-central Europe (i.e., Lake Meerfelder Maar, Rehwiese palaeolake) to investigate regional variations of environmental responses at the onset of the Younger Dryas along a West-East transect through north-central Europe.