REVIEWS OF TOPICAL PROBLEMS The quark-gluon medium

NASA Astrophysics Data System (ADS)

Dremin, Igor M.; Leonidov, Andrei V.

2011-02-01

The properties of the quark-gluon medium observed in high-energy nucleus-nucleus collisions are discussed. The main experimental facts about these collisions are briefly described and compared with data about proton-proton collisions. Both microscopic and macroscopic approaches to their description are reviewed. The chromodynamics of the quark-gluon medium at high energies is mainly considered. The energy loss of partons moving in this medium is treated. The principal conclusion is that the medium possesses some collective properties which are crucial for understanding the experimental observations.

The organic universe

NASA Astrophysics Data System (ADS)

2017-10-01

Our inventory of the molecular universe is continually progressing. Our understanding of the astrochemistry behind it will flourish if we are mindful of funding experimental and theoretical efforts as well as observational.

Event-shape fluctuations and flow correlations in ultra-relativistic heavy-ion collisions

DOE PAGES

Jia, Jiangyong

2014-12-01

I review recent measurements of a large set of flow observables associated with event-shape fluctuations and collective expansion in heavy ion collisions. First, these flow observables are classified and experiment methods are introduced. The experimental results for each type of observables are then presented and compared to theoretical calculations. A coherent picture of initial condition and collective flow based on linear and non-linear hydrodynamic responses is derived, which qualitatively describe most experimental results. I discuss new types of fluctuation measurements that can further our understanding of the event-shape fluctuations and collective expansion dynamics.

On the tunneling splitting in a cyclic water trimer

NASA Astrophysics Data System (ADS)

Mandziuk, Margaret

2016-09-01

We propose an alternative explanation of the "bifurcation" splittings observed for the water trimer in the VRT experiments of Saykally's group [Chem. Rev. 103 (2003) 2533]. In our interpretation, the splittings originate from the quantum delocalization of hydrogen bonded protons in the mean field potential between two oxygen neighbors. The pattern and the order of our calculated splittings is in the range of experimentally observed values. Consequently, quantum delocalization of protons should be considered seriously as the origin of experimentally observed fine splittings. The presented model can be extended to a water pentamer and, hopefully, advance our understanding of liquid water.

A model to investigate intention understanding in autism?. Comment on "Seeing mental states: An experimental strategy for measuring the observability of other minds" by Cristina Becchio et al.

NASA Astrophysics Data System (ADS)

Forbes, Paul A. G.; Hamilton, Antonia F. de C.

2018-03-01

Becchio et al. [2] specify the conditions under which mental states are observable in the kinematics of other agents. Given that autistic people display differences in their understanding of other's mental states [1] and show an insensitivity to the kinematics of co-actors' movements [5,10], what are the implications of Becchio et al.'s strategy for the study of autism?

Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes

NASA Astrophysics Data System (ADS)

Endy, Drew; You, Lingchong; Yin, John; Molineux, Ian J.

2000-05-01

We created a simulation based on experimental data from bacteriophage T7 that computes the developmental cycle of the wild-type phage and also of mutants that have an altered genome order. We used the simulation to compute the fitness of more than 105 mutants. We tested these computations by constructing and experimentally characterizing T7 mutants in which we repositioned gene 1, coding for T7 RNA polymerase. Computed protein synthesis rates for ectopic gene 1 strains were in moderate agreement with observed rates. Computed phage-doubling rates were close to observations for two of four strains, but significantly overestimated those of the other two. Computations indicate that the genome organization of wild-type T7 is nearly optimal for growth: only 2.8% of random genome permutations were computed to grow faster, the highest 31% faster, than wild type. Specific discrepancies between computations and observations suggest that a better understanding of the translation efficiency of individual mRNAs and the functions of qualitatively "nonessential" genes will be needed to improve the T7 simulation. In silico representations of biological systems can serve to assess and advance our understanding of the underlying biology. Iteration between computation, prediction, and observation should increase the rate at which biological hypotheses are formulated and tested.

Classical analogs for Rabi-oscillations, Ramsey-fringes, and spin-echo in Josephson junctions

NASA Astrophysics Data System (ADS)

Marchese, J. E.; Cirillo, M.; Grønbech-Jensen, N.

2007-08-01

We investigate the results of recently published experiments on the quantum behavior of Josephson circuits in terms of the classical modeling based on the resistively and capacitively-shunted (RCSJ) junction model. Our analysis shows evidence for a close analogy between the nonlinear behavior of a pulsed microwave-driven Josephson junction at low temperature and low dissipation and the experimental observations reported for the Josephson circuits. Specifically, we demonstrate that Rabi-oscillations, Ramsey-fringes, and spin-echo observations are not phenomena with a unique quantum interpretation. In fact, they are natural consequences of transients to phase-locking in classical nonlinear dynamics and can be observed in a purely classical model of a Josephson junction when the experimental recipe for the application of microwaves is followed and the experimental detection scheme followed. We therefore conclude that classical nonlinear dynamics can contribute to the understanding of relevant experimental observations of Josephson response to various microwave perturbations at very low temperature and low dissipation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yokosawa, A.

Experimental data concerning S = O dibaryon resonances are reviewed, with an emphasis on the nucleon-nucelon system. Structures observed in the ..gamma..d channel, the ..pi..d elastic scattering, pp ..-->.. ..pi..d channel, and other channels are discussed. Experimental data are compared with various theories. The short-range forces can be represented by dibaryon resonances. Further measurements to clarify the understanding of dibaryons are also discussed. 53 refs., 24 figs.

The relationship between experimental geometry, heat rate, and ultrasound wave speed measurement while observing phase changes in highly attenuative materials

NASA Astrophysics Data System (ADS)

Moore, David G.; Stair, Sarah L.; Jack, David A.

2018-04-01

Ultrasound techniques are capable of monitoring changes in the time-of-flight as a material is exposed to different thermal environments. The focus of the present study is to identify the phase of a material via ultrasound compression wave measurements in a through transmission experimental setup as the material is heated from a solid to a liquid and then allowed to re-solidify. The present work seeks to expand upon the authors' previous research, which proved this through transmission phase monitoring technique was possible, by considering different experimental geometries. The relationship between geometry, the measured speed of sound, and the temperature profile is presented. The use of different volumes helps in establishing a baseline understanding of which aspects of the experiment are geometry dependent and which are independent. The present study also investigates the relationship between the heating rate observed in the experiment and the measured speed of sound. The trends identified between the experimental geometry, heat rate and ultrasound wave speed measurement assist in providing a baseline understanding of the applicability of this technique to various industries, including the polymer industry and the oil industry.

The Relationship Between Experimental Geometry Heat Rate and Ultrasound Wave Speed Measurement While Observing Phase Changes in Highly Attenuative Materials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moore, David G.; Stair, Sarah Louise; Jack, David A.

Ultrasound techniques are capable of monitoring changes in the time-of-flight as a material is exposed to different thermal environments. The focus of the present study is to identify the phase of a material via ultrasound compression wave measurements in a through transmission experimental setup as the material is heated from a solid to a liquid and then allowed to re-solidify. The present work seeks to expand upon the authors’ previous research, which proved this through transmission phase monitoring technique was possible, by considering different experimental geometries. The relationship between geometry, the measured speed of sound, and the temperature profile ismore » presented. The use of different volumes helps in establishing a baseline understanding of which aspects of the experiment are geometry dependent and which are independent. The present study also investigates the relationship between the heating rate observed in the experiment and the measured speed of sound. Lastly, the trends identified between the experimental geometry, heat rate and ultrasound wave speed measurement assist in providing a baseline understanding of the applicability of this technique to various industries, including the polymer industry and the oil industry.« less

The Relationship Between Experimental Geometry Heat Rate and Ultrasound Wave Speed Measurement While Observing Phase Changes in Highly Attenuative Materials

DOE PAGES

Moore, David G.; Stair, Sarah Louise; Jack, David A.

2018-04-01

Ultrasound techniques are capable of monitoring changes in the time-of-flight as a material is exposed to different thermal environments. The focus of the present study is to identify the phase of a material via ultrasound compression wave measurements in a through transmission experimental setup as the material is heated from a solid to a liquid and then allowed to re-solidify. The present work seeks to expand upon the authors’ previous research, which proved this through transmission phase monitoring technique was possible, by considering different experimental geometries. The relationship between geometry, the measured speed of sound, and the temperature profile ismore » presented. The use of different volumes helps in establishing a baseline understanding of which aspects of the experiment are geometry dependent and which are independent. The present study also investigates the relationship between the heating rate observed in the experiment and the measured speed of sound. Lastly, the trends identified between the experimental geometry, heat rate and ultrasound wave speed measurement assist in providing a baseline understanding of the applicability of this technique to various industries, including the polymer industry and the oil industry.« less

Interaction of laser pulse with confined plasma during exit surface nanosecond laser damage

NASA Astrophysics Data System (ADS)

Rubenchik, Alexander M.; Feit, Michael D.; Demos, Stavros G.

2013-12-01

Interpretation of spatial and time resolved images of rear surface ns laser damage in dielectrics requires understanding of the dynamic interaction of the incoming laser beam with the confined expanding plasma in the material. The detailed kinetics of the plasma, involving both expansion and retraction, depends on details of reflection and absorption in the hot material. The growth of the hot region is treated using a model previously developed to understand laser peening. The pressure is found to scale as the square root of laser intensity and drops off slowly after energy deposition is complete. For the conditions of our experimental observations in fused silica, our model predicts a pressure of about 9 GPa and a surface expansion velocity of about 1.5 km/sec, in good agreement with experimental observation.

The Intersection of Theory and Application in Elucidating Pattern Formation in Developmental Biology

PubMed Central

Othmer, Hans G.; Painter, Kevin; Umulis, David; Xue, Chuan

2009-01-01

We discuss theoretical and experimental approaches to three distinct developmental systems that illustrate how theory can influence experimental work and vice-versa. The chosen systems – Drosophila melanogaster, bacterial pattern formation, and pigmentation patterns – illustrate the fundamental physical processes of signaling, growth and cell division, and cell movement involved in pattern formation and development. These systems exemplify the current state of theoretical and experimental understanding of how these processes produce the observed patterns, and illustrate how theoretical and experimental approaches can interact to lead to a better understanding of development. As John Bonner said long ago ‘We have arrived at the stage where models are useful to suggest experiments, and the facts of the experiments in turn lead to new and improved models that suggest new experiments. By this rocking back and forth between the reality of experimental facts and the dream world of hypotheses, we can move slowly toward a satisfactory solution of the major problems of developmental biology.’ PMID:19844610

Emergence of airway smooth muscle mechanical behavior through dynamic reorganization of contractile units and force transmission pathways

PubMed Central

2014-01-01

Airway hyperresponsiveness (AHR) in asthma remains poorly understood despite significant research effort to elucidate relevant underlying mechanisms. In particular, a significant body of experimental work has focused on the effect of tidal fluctuations on airway smooth muscle (ASM) cells, tissues, lung slices, and whole airways to understand the bronchodilating effect of tidal breathing and deep inspirations. These studies have motivated conceptual models that involve dynamic reorganization of both cytoskeletal components as well as contractile machinery. In this article, a biophysical model of the whole ASM cell is presented that combines 1) crossbridge cycling between actin and myosin; 2) actin-myosin disconnectivity, under imposed length changes, to allow dynamic reconfiguration of “force transmission pathways”; and 3) dynamic parallel-to-serial transitions of contractile units within these pathways that occur through a length fluctuation. Results of this theoretical model suggest that behavior characteristic of experimentally observed force-length loops of maximally activated ASM strips can be explained by interactions among the three mechanisms. Crucially, both sustained disconnectivity and parallel-to-serial transitions are necessary to explain the nature of hysteresis and strain stiffening observed experimentally. The results provide strong evidence that dynamic rearrangement of contractile machinery is a likely mechanism underlying many of the phenomena observed at timescales associated with tidal breathing. This theoretical cell-level model captures many of the salient features of mechanical behavior observed experimentally and should provide a useful starting block for a bottom-up approach to understanding tissue-level mechanical behavior. PMID:24481961

Experimental study of nuclear fusion reactions in muonic molecular systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bogdanova, L. N., E-mail: ludmila@itep.ru

2013-03-15

Since the pioneering discovery of the muon catalysis by Alvarez [L. W. Alvarez, K. Brander, F. S. Crawford, et al., Phys. Rev. 105, 1127 (1957)], considerable efforts were aimed at observation of various fusion processes. Results of these studies facilitated understanding the properties of lightest nuclei and dynamics of low-energy fusion reactions. There still remain unsolved theoretical and experimental problems, especially in case of pt fusion.

Perspective: researching the transition from non-living to the first microorganisms: methods and experiments are major challenges.

PubMed

Trevors, J T

2010-06-01

Methods to research the origin of microbial life are limited. However, microorganisms were the first organisms on the Earth capable of cell growth and division, and interactions with their environment, other microbial cells, and eventually with diverse eukaryotic organisms. The origin of microbial life and the supporting scientific evidence are both an enigma and a scientific priority. Numerous hypotheses have been proposed, scenarios imagined, speculations presented in papers, insights shared, and assumptions made without supporting experimentation, which have led to limited progress in understanding the origin of microbial life. The use of the human imagination to envision the origin of life events, without supporting experimentation, observation and independently replicated experiments required for science, is a significant constraint. The challenge remains how to better understand the origin of microbial life using observations and experimental methods as opposed to speculation, assumptions, scenarios, envisioning events and un-testable hypotheses. This is not an easy challenge as experimental design and plausible hypothesis testing are difficult. Since past approaches have been inconclusive in providing evidence for the origin of microbial life mechanisms and the manner in which genetic instructions was encoded into DNA/RNA, it is reasonable and logical to propose that progress will be made when testable, plausible hypotheses and methods are used in the origin of microbial life research, and the experimental observations are, or are not reproduced in independent laboratories. These perspectives will be discussed in this article as well as the possibility that a pre-biotic film preceded a microbial biofilm as a possible micro-location for the origin of microbial cells capable of growth and division. 2010 Elsevier B.V. All rights reserved.

Experimental results on current-driven turbulence in plasmas - a survey

NASA Astrophysics Data System (ADS)

de Kluiver, H.; Perepelkin, N. F.; Hirose, A.

1991-01-01

The experimental consequences of plasma turbulence driven by a current parallel to a magnetic field and concurrent anomalous plasma heating are reviewed, with an attempt to deduce universalities in key parameters such as the anomalous electrical conductivities observed in diverse devices. It has been found that the nature of plasma turbulence and turbulent heating depends on several parameters including the electric field, current and magnetic fields. A classification of turbulence regimes based on these parameters has been made. Experimental observations of the anomalous electrical conductivity, plasma heating, skin effect, runaway electron braking and turbulent fluctuations are surveyed, and current theoretical understanding is briefly reviewed. Experimental results recently obtained in stellarators (SIRIUS, URAGAN at Kharkov), and in tokamaks (TORTUR at Nieuwegein, STOR-1M at Saskatoon) are presented in some detail in the light of investigating the feasibility of using turbulent heating as a means of injecting a large power into toroidal devices.

Watching novice action degrades expert motor performance: Causation between action production and outcome prediction of observed actions by humans

PubMed Central

Ikegami, Tsuyoshi; Ganesh, Gowrishankar

2014-01-01

Our social skills are critically determined by our ability to understand and appropriately respond to actions performed by others. However despite its obvious importance, the mechanisms enabling action understanding in humans have remained largely unclear. A popular but controversial belief is that parts of the motor system contribute to our ability to understand observed actions. Here, using a novel behavioral paradigm, we investigated this belief by examining a causal relation between action production, and a component of action understanding - outcome prediction, the ability of a person to predict the outcome of observed actions. We asked dart experts to watch novice dart throwers and predict the outcome of their throws. We modulated the feedbacks provided to them, caused a specific improvement in the expert's ability to predict watched actions while controlling the other experimental factors, and exhibited that a change (improvement) in their outcome prediction ability results in a progressive and proportional deterioration in the expert's own darts performance. This causal relationship supports involvement of the motor system in outcome prediction by humans of actions observed in others. PMID:25384755

Experimental observation of the asymmetric instability of intermediate-reduced-volume vesicles in extensional flow.

PubMed

Dahl, Joanna B; Narsimhan, Vivek; Gouveia, Bernardo; Kumar, Sanjay; Shaqfeh, Eric S G; Muller, Susan J

2016-04-20

Vesicles provide an attractive model system to understand the deformation of living cells in response to mechanical forces. These simple, enclosed lipid bilayer membranes are suitable for complementary theoretical, numerical, and experimental analysis. A recent study [Narsimhan, Spann, Shaqfeh, J. Fluid Mech., 2014, 750, 144] predicted that intermediate-aspect-ratio vesicles extend asymmetrically in extensional flow. Upon infinitesimal perturbation to the vesicle shape, the vesicle stretches into an asymmetric dumbbell with a cylindrical thread separating the two ends. While the symmetric stretching of high-aspect-ratio vesicles in extensional flow has been observed and characterized [Kantsler, Segre, Steinberg, Phys. Rev. Lett., 2008, 101, 048101] as well as recapitulated in numerical simulations by Narsimhan et al., experimental observation of the asymmetric stretching has not been reported. In this work, we present results from microfluidic cross-slot experiments observing this instability, along with careful characterization of the flow field, vesicle shape, and vesicle bending modulus. The onset of this shape transition depends on two non-dimensional parameters: reduced volume (a measure of vesicle asphericity) and capillary number (ratio of viscous to bending forces). We observed that every intermediate-reduced-volume vesicle that extends forms a dumbbell shape that is indeed asymmetric. For the subset of the intermediate-reduced-volume regime we could capture experimentally, we present an experimental phase diagram for asymmetric vesicle stretching that is consistent with the predictions of Narsimhan et al.

Quantum Monte Carlo study of the phase diagram of solid molecular hydrogen at extreme pressures

PubMed Central

Drummond, N. D.; Monserrat, Bartomeu; Lloyd-Williams, Jonathan H.; Ríos, P. López; Pickard, Chris J.; Needs, R. J.

2015-01-01

Establishing the phase diagram of hydrogen is a major challenge for experimental and theoretical physics. Experiment alone cannot establish the atomic structure of solid hydrogen at high pressure, because hydrogen scatters X-rays only weakly. Instead, our understanding of the atomic structure is largely based on density functional theory (DFT). By comparing Raman spectra for low-energy structures found in DFT searches with experimental spectra, candidate atomic structures have been identified for each experimentally observed phase. Unfortunately, DFT predicts a metallic structure to be energetically favoured at a broad range of pressures up to 400 GPa, where it is known experimentally that hydrogen is non-metallic. Here we show that more advanced theoretical methods (diffusion quantum Monte Carlo calculations) find the metallic structure to be uncompetitive, and predict a phase diagram in reasonable agreement with experiment. This greatly strengthens the claim that the candidate atomic structures accurately model the experimentally observed phases. PMID:26215251

Understanding the Femtosecond Laser-Solid Interaction Near and Beyond the Material Damage Threshold

DTIC Science & Technology

2016-05-23

study of the fundamentals of femtosecond laser damage as a function of various parameters, laser wavelength, pulsewidth, pulse number, experimental ... experimental observation without any free parameters. The brand new FSD Lab constructed under the BRI grant in the Physics Research Building at the Ohio... studied across a range of band-gaps for s- and p-polarized light and it is found that conventional theoretical prediction on laser damage threshold

Ab Initio Studies of Stratospheric Ozone Depletion Chemistry

NASA Technical Reports Server (NTRS)

Lee, Timothy J.; Head-Gordon, Martin; Langhoff, Stephen R. (Technical Monitor)

1995-01-01

An overview of the current understanding of ozone depletion chemistry, particularly with regards the formation of the so-called Antarctic ozone hole, will be presented together with an outline as to how ab initio quantum chemistry can be used to further our understanding of stratospheric chemistry. The ability of modern state-of-the art ab initio quantum chemical techniques to characterize reliably the gas-phase molecular structure, vibrational spectrum, electronic spectrum, and thermal stability of fluorine, chlorine, bromine and nitrogen oxide species will be demonstrated by presentation of some example studies. The ab initio results will be shown to be in excellent agreement with the available experimental data, and where the experimental data are either not known or are inconclusive, the theoretical results are shown to fill in the gaps and to resolve experimental controversies. In addition, ab initio studies in which the electronic spectra and the characterization of excited electronic states of halogen oxide species will also be presented. Again where available, the ab initio results are compared to experimental observations, and are used to aid in the interpretation of experimental studies.

The Science of Filming Science

NASA Astrophysics Data System (ADS)

Harned, D.

2016-12-01

Filmmaking is a science. It is observation, data collection, analysis, experimentation, structure, and presentation. Filmmaking is a process that is familiar to scientists. Observation - what we know is gained from observation of the world around us. Film allows us to focus this observation, to pick out details, to understand nuance, to direct seeing. Filmmaking is a tool for learning about the world. Data collection - to study what we observe we must see what it is now, and how it is changing. This element of filmmaking is collecting images, video, documenting events, and gathering information. Analysis - to understand the film data we have collected we must understand connections, correlations, and cause and effect. We ask questions. We discover. Experimentation - film allows us to experiment with different scenarios, to test observations and make models. Structure - what we find or what we want to present must be sorted into a structured format using the tools of writing, filming, and editing. Presentation - the final film is the result of what we observe, what observations we collect, what we learn from those observations, how we test what we've learned, and how we organize and show what we find. Online video is transforming the way we see the world. We now have easy access to lectures by the famous and the obscure; we can observe lab experiments, documentaries of field expeditions, and actually see recent research results. Video is omnipresent in our culture and supplements or even replaces writing in many applications. We can easily present our own scientific results to new and important audiences. Video can do a lot for science and scientists: It can provide an expanded audience for scientific news and information, educate thousands, spread the word about scientific developments, help frame controversial science issues, show real scientists at work in the real world, promote interest in scientific publications, and report on science-agency programs. It can also interest young people in future science careers.

Can the problem of the observability of other minds be solved in the lab?. Comment on "Seeing mental states: An experimental strategy for measuring the observability of other minds" by Cristina Becchio et al.

NASA Astrophysics Data System (ADS)

Puusepp, Vivian

2018-03-01

In the area of social cognition, several questions that were first discussed by philosophers, have inspired empirical scientists to invent new experimental paradigms in order to tackle related issues. The results of experiments conducted within these paradigms have in turn contributed to theoretical discussions. For example, the first false belief task [1] was developed after three philosophers, Dennett, Bennett, and Harman [2-4] independently argued that possession of the concept of belief is crucial to understanding others' mental states.

Fluctuations and QCD phase structure

NASA Astrophysics Data System (ADS)

Kitazawa, Masakiyo

2014-11-01

Fluctuation observables are invaluable tools in relativistic heavy ion collisions to investigate primordial thermodynamics of fireballs. Active experimental measurements have been performed at RHIC and LHC. In particular, interesting experimental results were recently reported on the electric charge fluctuation at ALICE and on the higher order cumulants at STAR, which show nontrivial behaviors reflecting non-hadronic and/or non-thermal physics. We argue that more detailed understanding on these observables are needed to use them effectively in the analysis of QCD phase structure. We suggest that the measurement of various cumulants of conserved charges including baryon number and their rapidity window dependence will provide important information needed for making progress in this subject.

Virtual experiments, physical validation: dental morphology at the intersection of experiment and theory

PubMed Central

Anderson, P. S. L.; Rayfield, E. J.

2012-01-01

Computational models such as finite-element analysis offer biologists a means of exploring the structural mechanics of biological systems that cannot be directly observed. Validated against experimental data, a model can be manipulated to perform virtual experiments, testing variables that are hard to control in physical experiments. The relationship between tooth form and the ability to break down prey is key to understanding the evolution of dentition. Recent experimental work has quantified how tooth shape promotes fracture in biological materials. We present a validated finite-element model derived from physical compression experiments. The model shows close agreement with strain patterns observed in photoelastic test materials and reaction forces measured during these experiments. We use the model to measure strain energy within the test material when different tooth shapes are used. Results show that notched blades deform materials for less strain energy cost than straight blades, giving insights into the energetic relationship between tooth form and prey materials. We identify a hypothetical ‘optimal’ blade angle that minimizes strain energy costs and test alternative prey materials via virtual experiments. Using experimental data and computational models offers an integrative approach to understand the mechanics of tooth morphology. PMID:22399789

Effective nucleon mass and the nuclear caloric curve

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shetty, D. V.; Souliotis, G. A.; Galanopoulos, S.

2009-03-15

Assuming a schematic form of the nucleon effective mass as a function of nuclear excitation energy and mass, we provide a simple explanation for understanding the experimentally observed mass dependence of the nuclear caloric curve. It is observed that the excitation energy at which the caloric curve enters into a plateau region could be sensitive to the nuclear mass evolution of the effective nucleon mass.

Laboratory model of the cardiovascular system for experimental demonstration of pulse wave propagation

NASA Astrophysics Data System (ADS)

Stojadinović, Bojana; Nestorović, Zorica; Djurić, Biljana; Tenne, Tamar; Zikich, Dragoslav; Žikić, Dejan

2017-03-01

The velocity by which a disturbance moves through the medium is the wave velocity. Pulse wave velocity is among the key parameters in hemodynamics. Investigation of wave propagation through the fluid-filled elastic tube has a great importance for the proper biophysical understanding of the nature of blood flow through the cardiovascular system. Here, we present a laboratory model of the cardiovascular system. We have designed an experimental setup which can help medical and nursing students to properly learn and understand basic fluid hemodynamic principles, pulse wave and the phenomenon of wave propagation in blood vessels. Demonstration of wave propagation allowed a real time observation of the formation of compression and expansion waves by students, thus enabling them to better understand the difference between the two waves, and also to measure the pulse wave velocity for different fluid viscosities. The laboratory model of the cardiovascular system could be useful as an active learning methodology and a complementary tool for understanding basic principles of hemodynamics.

Geochemical Constraints on Core Formation in the Earth

NASA Technical Reports Server (NTRS)

Jones, John H.; Drake, Michael J.

1986-01-01

New experimental data on the partitioning of siderophile and chalcophile elements among metallic and silicate phases may be used to constrain hypotheses of core formation in the Earth. Three current hypotheses can explain gross features of mantle geochemistry, but none predicts siderophile and chalcophile element abundances to within a factor of two of observed values. Either our understanding of metal-silicate interactions and/or our understanding of the early Earth requires revision.

Understanding heat and fluid flow in linear GTA welds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zacharia, T.; David, S.A.; Vitek, J.M.

1992-01-01

A transient heat flow and fluid flow model was used to predict the development of gas tungsten arc (GTA) weld pools in 1.5 mm thick AISI 304 SS. The welding parameters were chosen so as to correspond to an earlier experimental study which produced high-resolution surface temperature maps. The motivation of the present study was to verify the predictive capability of the computational model. Comparison of the numerical predictions and experimental observations indicate good agreement.

Understanding heat and fluid flow in linear GTA welds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zacharia, T.; David, S.A.; Vitek, J.M.

1992-12-31

A transient heat flow and fluid flow model was used to predict the development of gas tungsten arc (GTA) weld pools in 1.5 mm thick AISI 304 SS. The welding parameters were chosen so as to correspond to an earlier experimental study which produced high-resolution surface temperature maps. The motivation of the present study was to verify the predictive capability of the computational model. Comparison of the numerical predictions and experimental observations indicate good agreement.

An Overhead Demonstration of Some Descriptive Chemistry of the Halogens and LeChatelier's Principle.

ERIC Educational Resources Information Center

Hansen, Robert C.

1988-01-01

Describes a demonstration procedure using controlled reduction potentials to predict observed color changes which are then experimentally verified. Demonstrates the usefulness of this procedure in helping students understand LeChatelier's principle and the solubilit rule "like dissolves like." (CW)

Understanding the Role of Solvation Forces on the Preferential Attachment of Nanoparticles in Liquid

DOE PAGES

Welch, David A.; Woehl, Taylor J.; Park, Chiwoo; ...

2015-11-20

We discuss optimization of colloidal nanoparticle synthesis techniques, which requires an understanding of underlying particle growth mechanisms. Nonclassical growth mechanisms are particularly important as they affect nanoparticle size and shape distributions, which in turn influence functional properties. For example, preferential attachment of nanoparticles is known to lead to the formation of mesocrystals, although the formation mechanism is currently not well-understood. Here we employ in situ liquid cell scanning transmission electron microscopy and steered molecular dynamics (SMD) simulations to demonstrate that the experimentally observed preference for end-to-end attachment of silver nanorods is a result of weaker solvation forces occurring at rodmore » ends. In conclusion, SMD reveals that when the side of a nanorod approaches another rod, perturbation in the surface-bound water at the nanorod surface creates significant energy barriers to attachment. Additionally, rod morphology (i.e., facet shape) effects can explain the majority of the side attachment effects that are observed experimentally.« less

Understanding the Role of Solvation Forces on the Preferential Attachment of Nanoparticles in Liquid

DOE Office of Scientific and Technical Information (OSTI.GOV)

Welch, David A.; Woehl, Taylor J.; Park, Chiwoo

We discuss optimization of colloidal nanoparticle synthesis techniques, which requires an understanding of underlying particle growth mechanisms. Nonclassical growth mechanisms are particularly important as they affect nanoparticle size and shape distributions, which in turn influence functional properties. For example, preferential attachment of nanoparticles is known to lead to the formation of mesocrystals, although the formation mechanism is currently not well-understood. Here we employ in situ liquid cell scanning transmission electron microscopy and steered molecular dynamics (SMD) simulations to demonstrate that the experimentally observed preference for end-to-end attachment of silver nanorods is a result of weaker solvation forces occurring at rodmore » ends. In conclusion, SMD reveals that when the side of a nanorod approaches another rod, perturbation in the surface-bound water at the nanorod surface creates significant energy barriers to attachment. Additionally, rod morphology (i.e., facet shape) effects can explain the majority of the side attachment effects that are observed experimentally.« less

Understanding the Role of Solvation Forces on the Preferential Attachment of Nanoparticles in Liquid

DOE Office of Scientific and Technical Information (OSTI.GOV)

Welch, David A.; Woehl, Taylor J.; Park, Chiwoo

Optimization of colloidal nanoparticle synthesis techniques requires an understanding of underlying particle growth mechanisms. Non-classical growth mechanisms are particularly important as they affect nanoparticle size and shape distributions which in turn influence functional properties. For example, preferential attachment of nanoparticles is known to lead to the formation of mesocrystals, although the formation mechanism is currently not well understood. Here we employ in situ liquid cell scanning transmission electron microscopy (STEM) and steered molecular dynamics (SMD) simulations to demonstrate that the experimentally observed preference for end-to-end attachment of silver nanorods is a result of weaker solvation forces occurring at rod ends.more » SMD reveals that when the side of a nanorod approaches another rod, perturbation in the surface bound water at the nanorod surface creates significant energy barriers to attachment. Additionally, rod morphology (i.e. facet shape) effects can explain the majority of the side attachment effects that are observed experimentally.« less

Inherited secondary nephrogenic diabetes insipidus: concentrating on humans.

PubMed

Bockenhauer, D; Bichet, D G

2013-04-15

The study of human physiology is paramount to understanding disease and developing rational and targeted treatments. Conversely, the study of human disease can teach us a lot about physiology. Investigations into primary inherited nephrogenic diabetes insipidus (NDI) have contributed enormously to our understanding of the mechanisms of urinary concentration and identified the vasopressin receptor AVPR2, as well as the water channel aquaporin-2 (AQP2), as key players in water reabsorption in the collecting duct. Yet, there are also secondary forms of NDI, for instance as a complication of lithium treatment. The focus of this review is secondary NDI associated with inherited human diseases, such as Bartter syndrome or apparent mineralocorticoid excess. Currently, the underlying pathophysiology of this inherited secondary NDI is unclear, but there appears to be true AQP2 deficiency. To better understand the underlying mechanism(s), collaboration between clinical and experimental physiologists is essential to further investigate these observations in appropriate experimental models.

The Development of Experimentation and Evidence Evaluation Skills at Preschool Age

NASA Astrophysics Data System (ADS)

Piekny, Jeanette; Grube, Dietmar; Maehler, Claudia

2014-01-01

Researchers taking a domain-general approach to the development of scientific reasoning long thought that the ability to engage in scientific reasoning did not develop until adolescence. However, more recent studies have shown that preschool children already have a basic ability to evaluate evidence and a basic understanding of experimentation. Data providing insights into when exactly in the preschool years significant gains in these abilities occur are scarce. Drawing on a sample of 138 preschool children, this longitudinal study therefore examined how children's ability to evaluate evidence and their understanding of experimentation develop between the ages of four and six. Findings showed that the ability to evaluate evidence was already well developed at age four and increased steadily and significantly over time as long as the pattern of covariation was perfect. In the case of imperfect covariation, the proportion of correct answers was low over the period of observation, but showed a significant increase between the ages of four and five. If the data did not allow relationship between variables to be inferred, the proportion of correct answers was low, with a significant increase between the ages of five and six. The children's understanding of experimentation increased significantly between the ages of five and six. The implications of these findings for age-appropriate science programs in preschool are discussed.

Modeling of coherent ultrafast magneto-optical experiments: Light-induced molecular mean-field model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hinschberger, Y.; Hervieux, P.-A.

2015-12-28

We present calculations which aim to describe coherent ultrafast magneto-optical effects observed in time-resolved pump-probe experiments. Our approach is based on a nonlinear semi-classical Drude-Voigt model and is used to interpret experiments performed on nickel ferromagnetic thin film. Within this framework, a phenomenological light-induced coherent molecular mean-field depending on the polarizations of the pump and probe pulses is proposed whose microscopic origin is related to a spin-orbit coupling involving the electron spins of the material sample and the electric field of the laser pulses. Theoretical predictions are compared to available experimental data. The model successfully reproduces the observed experimental trendsmore » and gives meaningful insight into the understanding of magneto-optical rotation behavior in the ultrafast regime. Theoretical predictions for further experimental studies are also proposed.« less

Numerical and Experimental Investigations of Humping Phenomena in Laser Micro Welding

NASA Astrophysics Data System (ADS)

Otto, Andreas; Patschger, Andreas; Seiler, Michael

The Humping effect is a phenomenon which is observed approximately since 50 years in various welding procedures and is characterized by droplets due to a pile-up of the melt pool. It occurs within a broad range of process parameters. Particularly during micro welding, humping effect is critical due to typically high feed rates. In the past, essentially two approaches (fluid-dynamic approach of streaming melt within the molten pool and the Plateau-Rayleigh instability of a liquid jet) were discussed in order to explain the occurrence of the humping effect. But none of both can fully explain all observed effects. For this reason, experimental studies in micro welding of thin metal foils were performed in order to determine the influence of process parameters on the occurrence of humping effects. The experimental observations were compared with results from numerical multi-physical simulations (incorporating beam propagation, incoupling, heat transfer, fluid dynamics etc.) to provide a deeper understanding of the causes for hump formation.

Observation of two-dimensional Faraday waves in extremely shallow depth.

PubMed

Li, Xiaochen; Yu, Zhengyue; Liao, Shijun

2015-09-01

A family of two-dimensional Faraday waves in extremely shallow depth (1 mm to 2 mm) of absolute ethanol are observed experimentally using a Hele-Shaw cell that vibrates vertically. The same phenomena are not observed by means of water, ethanol solution, and silicone oil. These Faraday waves are quite different from the traditional ones. These phenomena are helpful to deepen and enrich our understandings about Faraday waves, and besides provide a challenging problem for computational fluid dynamics.

Need for Initiatives to Promote Procedural Understanding in Physics among School Teachers

NASA Astrophysics Data System (ADS)

Khaparde, Rajesh B.

2010-07-01

It is believed that there are three essential abilities which a student develops through a set of introductory physics laboratory courses. These abilities include 1) conceptual understanding, 2) experimental skills, and 3) procedural understanding. While the first two are well accepted, the third one is often implicit and goes behind the planning and execution of experimental physics. Procedural understanding has been described by a number of researchers including R. Gott and S. Duggan [1], and R. Roberts [2]. The author in his work [3] has adopted the approach of these researchers and extended it to physics laboratory training at the university level. Procedural understanding is the understanding of a set of ideas or concepts related to the `knowing how' of science and needed to put science into practice. It is the understanding of `concepts of evidence' like variable identification, sample size, variable types, relative scale, range, interval, choice of instruments, repeatability, graph type, etc. It is the thinking behind the doing and is a kind of cognitive understanding in its own right. It has been observed that while school (Grade 1-12) teachers are reasonably prepared to help students with respect to the development of conceptual understanding and experimental skills, a few are aware of the contents, methods and strategies related to the development of procedural understanding. It is felt that school teachers can play a very important role in helping students to develop procedural understanding at an early stage of their education and before students enter university courses. A need was felt to initiate and promote well-planned teacher improvement programmes at various levels of school education, with an objective to develop procedural understanding and understand the strategies of teaching suitable for various regions and learning environments. The author has initiated one such programme in India and will present details of a workshop organized at Mumbai, India.

Effects of food limitation and emigration on self-thinning in experimental minnow cohorts

USGS Publications Warehouse

Dunham, J.B.; Dickerson, B. R.; Beever, E.; Duncan, R. D.; Vinyard, G.L.

2000-01-01

5. Most of the support for FST in mobile animals comes from observational data on mean body mass and population density. Potentially important mechanisms, including the manner in which individuals are lost or retained in populations, are usually not investigated directly. Such tests of FST can only provide equivocal support. Detailed observational study and controlled experiments are needed to understand casual mechanisms.

AN IN SILICO INVESTIGATION OF THE ENANTIOSELECTIVE METABOLISM RATES OF TRIAZOLE FUGICIDES

EPA Science Inventory

The objective of this work is to use in silico methods such as ab initio quantum and classical force-field methods to explore and develop an understanding for the enantioselective metabolism rates experimentally observed in the triazole fungicide bromuconazole. This directed stud...

Observational learning from a radical-behavioristic viewpoint

PubMed Central

Deguchi, Hikaru

1984-01-01

Bandura (1972, 1977b) has argued that observational learning has some distinctive features that set it apart from the operant paradigm: (1) acquisition simply through observation, (2) delayed performance through cognitive mediation, and (3) vicarious reinforcement. The present paper first redefines those three features at the descriptive level, and then adopts a radical-behavioristic viewpoint to show how those redefined distinctive features can be explained and tested experimentally. Finally, the origin of observational learning is discussed in terms of recent data of neonatal imitation. The present analysis offers a consistent theoretical and practical understanding of observational learning from a radical-behavioristic viewpoint. PMID:22478602

Experimental history: swinging pendulums and melting shellac.

PubMed

Palmieri, Paolo

2009-09-01

Four hundred years ago Galileo Galilei aimed a telescope at the sky. He revolutionized astronomy. Equally revolutionary were his experiments in physics. Unlike his astronomical observations the experiments remain difficult to understand and replicate even today. Two centuries after Galileo, Augustin Coulomb demonstrated experimentally the law of electrostatic force. It has never been successfully replicated. Yet both Galileo and Coulomb were exquisite experimentalists. The fact is that revolutionary experiments in physics are never finished. They are open for investigation for generations to come.

Polarization observables in few nucleon systems with CLAS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zachariou, Nicholas

The CEBAF Large Acceptance Spectrometer (CLAS), housed in Hall-B at the Thomas Jefferson National Accelerator Facility provides us with the experimental tools to study strongly-interacting matter and its dynamics in the transition from hadronic to partonic degrees of freedom in nuclear interactions. In this paper we discuss the progress made in understanding the relevant degrees of freedom using polarisation observables of deuteron photodisintegration in the few-GeV photon-energy region. We also address progress made in studying the interaction between Hyperons and Nucleons via polarisation observables, utilising high-statistics experiments that provided us with the large data samples needed to study final-state interactions,more » as well as perform detailed studies on initial-state effects. The polarisation observables presented here provide us with unique experimental tools to study the underlying dynamics of both initial and final-state interactions, as well as the information needed to disentangle signal from background contributions.« less

Polarization observables in few nucleon systems with CLAS

DOE PAGES

Zachariou, Nicholas

2017-12-01

The CEBAF Large Acceptance Spectrometer (CLAS), housed in Hall-B at the Thomas Jefferson National Accelerator Facility provides us with the experimental tools to study strongly-interacting matter and its dynamics in the transition from hadronic to partonic degrees of freedom in nuclear interactions. In this paper we discuss the progress made in understanding the relevant degrees of freedom using polarisation observables of deuteron photodisintegration in the few-GeV photon-energy region. We also address progress made in studying the interaction between Hyperons and Nucleons via polarisation observables, utilising high-statistics experiments that provided us with the large data samples needed to study final-state interactions,more » as well as perform detailed studies on initial-state effects. The polarisation observables presented here provide us with unique experimental tools to study the underlying dynamics of both initial and final-state interactions, as well as the information needed to disentangle signal from background contributions.« less

Micro-channel filling flow considering surface tension effect

NASA Astrophysics Data System (ADS)

Kim, Dong Sung; Lee, Kwang-Cheol; Kwon, Tai Hun; Lee, Seung S.

2002-05-01

Understanding filling flow into micro-channels is important in designing micro-injection molding, micro-fluidic devices and an MIMIC (micromolding in capillaries) process. In this paper, we investigated, both experimentally and numerically, 'transient filling' flow into micro-channels, which differs from steady-state completely 'filled' flow in micro-channels. An experimental flow visualization system was devised to facilitate observation of flow characteristics in filling into micro-channels. Three sets of micro-channels of various widths of different thicknesses (20, 30, and 40 μm) were fabricated using SU-8 on the silicon substrate to find a geometric effect with regard to pressure gradient, viscous force and, in particular, surface tension. A numerical analysis system has also been developed taking into account the surface tension effect with a contact angle concept. Experimental observations indicate that surface tension significantly affects the filling flow to such an extent that even a flow blockage phenomenon was observed at channels of small width and thickness. A numerical analysis system also confirms that the flow blockage phenomenon could take place due to the flow hindrance effect of surface tension, which is consistent with experimental observation. For proper numerical simulations, two correction factors have also been proposed to correct the conventional hydraulic radius for the filling flow in rectangular cross-sectioned channels.

Understanding THz spectra of aqueous solutions: glycine in light and heavy water.

PubMed

Sun, Jian; Niehues, Gudrun; Forbert, Harald; Decka, Dominique; Schwaab, Gerhard; Marx, Dominik; Havenith, Martina

2014-04-02

THz spectroscopy of aqueous solutions has been established as of recently to be a valuable and complementary experimental tool to provide direct insights into the solute-solvent coupling due to hydrogen-bond dynamics involving interfacial water. Despite much experimental progress, understanding THz spectra in terms of molecular motions, akin to mid-infrared spectra, still remains elusive. Here, using the osmoprotectant glycine as a showcase, we demonstrate how this can be achieved by combining THz absorption spectroscopy and ab initio molecular dynamics. The experimental THz spectrum is characterized by broad yet clearly discernible peaks. Based on substantial extensions of available mode-specific decomposition schemes, the experimental spectrum can be reproduced by theory and assigned on an essentially quantitative level. This joint effort reveals an unexpectedly clear picture of the individual contributions of molecular motion to the THz absorption spectrum in terms of distinct modes stemming from intramolecular vibrations, rigid-body-like hindered rotational and translational motion, and specific couplings to interfacial water molecules. The assignment is confirmed by the peak shifts observed in the THz spectrum of deuterated glycine in heavy water, which allow us to separate the distinct modes experimentally.

CO adsorption on the “29” Cu xO/Cu(111) surface: An integrated DFT, STM, and TPD study

DOE PAGES

Hensley, Alyssa J. R.; Therrien, Andrew J.; Zhang, Renqin; ...

2016-10-04

The elucidation of an accurate atomistic model of surface structures is crucial for the design and understanding of effective catalysts, a process requiring a close collaboration between experimental observations and theoretical models. Any developed surface theoretical model must agree with experimental results for the surface when both clean and adsorbate covered. Here, we present a detailed study of the adsorption of CO on the “29” Cu xO/ Cu(111) surface, which is important in the understanding of ubiquitous Cubased catalysis. This study uses scanning tunneling microscopy, temperatureprogrammed desorption, and density functional theory to analyze CO adsorption on the “29” Cu xO/Cu(111)more » surface. From the experimental scanning tunneling microscopy images, CO was found to form six different ordered structures on the “29” Cu xO/Cu(111) surface depending on the surface CO coverage. By modeling the adsorption of CO on our atomistic model of the “29” Cu xO/Cu(111) surface at different coverages, we were able to match the experimentally observed CO ordered structures to specific combinations of sites on the “29” Cu xO/Cu(111) surface. Lastly, the high degree of agreement seen here between experiment and theory for the adsorption of CO on the “29” Cu xO/Cu(111) surface at various CO coverages provides further support that our atomistic model of the “29” Cu xO/Cu(111) surface is experimentally accurate.« less

Ultra High Mode Mix in NIF NIC Implosions

NASA Astrophysics Data System (ADS)

Scott, Robbie; Garbett, Warren

2017-10-01

This work re-examines a sub-set of the low adiabat implosions from the National Ignition Campaign in an effort to better understand potential phenomenological sources of `excess' mix observed experimentally. An extensive effort has been made to match both shock-timing and backlit radiography (Con-A) implosion data in an effort to reproduce the experimental conditions as accurately as possible. Notably a 30% reduction in ablation pressure at peak drive is required to match the experimental data. The reduced ablation pressure required to match the experimental data allows the ablator to decompress, in turn causing the DT ice-ablator interface to go Rayleigh-Taylor unstable early in the implosion acceleration phase. Post-processing the runs with various mix models indicates high-mode mix from the DT ice-ablator interface may penetrate deep into the hotspot. This work offers a potential explanation of why these low-adiabat implosions exhibited significantly higher levels of mix than expected from high-fidelity multi-dimensional simulations. Through this new understanding, a possible route forward for low-adiabat implosions on NIF is suggested.

Modeling an Excitable Biosynthetic Tissue with Inherent Variability for Paired Computational-Experimental Studies.

PubMed

Gokhale, Tanmay A; Kim, Jong M; Kirkton, Robert D; Bursac, Nenad; Henriquez, Craig S

2017-01-01

To understand how excitable tissues give rise to arrhythmias, it is crucially necessary to understand the electrical dynamics of cells in the context of their environment. Multicellular monolayer cultures have proven useful for investigating arrhythmias and other conduction anomalies, and because of their relatively simple structure, these constructs lend themselves to paired computational studies that often help elucidate mechanisms of the observed behavior. However, tissue cultures of cardiomyocyte monolayers currently require the use of neonatal cells with ionic properties that change rapidly during development and have thus been poorly characterized and modeled to date. Recently, Kirkton and Bursac demonstrated the ability to create biosynthetic excitable tissues from genetically engineered and immortalized HEK293 cells with well-characterized electrical properties and the ability to propagate action potentials. In this study, we developed and validated a computational model of these excitable HEK293 cells (called "Ex293" cells) using existing electrophysiological data and a genetic search algorithm. In order to reproduce not only the mean but also the variability of experimental observations, we examined what sources of variation were required in the computational model. Random cell-to-cell and inter-monolayer variation in both ionic conductances and tissue conductivity was necessary to explain the experimentally observed variability in action potential shape and macroscopic conduction, and the spatial organization of cell-to-cell conductance variation was found to not impact macroscopic behavior; the resulting model accurately reproduces both normal and drug-modified conduction behavior. The development of a computational Ex293 cell and tissue model provides a novel framework to perform paired computational-experimental studies to study normal and abnormal conduction in multidimensional excitable tissue, and the methodology of modeling variation can be applied to models of any excitable cell.

Numerical simulations of quasi-perpendicular collisionless shocks

NASA Technical Reports Server (NTRS)

Goodrich, C. C.

1985-01-01

Numerical simulations of collisionless quasi-perpendicular shock waves are reviewed. The strengths and limitations of these simulations are discussed and their experimental (laboratory and spacecraft) context is given. Recent simulation results are emphasized that, with ISEE bow shock observations, are responsible for recent progress in understanding quasi-steady shock structure.

Continuous adaptive monitoring of status and trends in ecosystem conditions

Treesearch

R. L. Czaplewski

1996-01-01

Adaptive management uses an experimental approach in the stewardship of our natural resources. This paper advocates the complementary concept of "adaptive monitoring" to observe and evaluate the outcomes of these experiments. Adaptive management acknowledges that decisions must be made in spite of imperfect understanding of their consequences;...

Asymmetrical Capacitors for Propulsion and the ISR Asymmetrical Capacitator Thruster, Experimental Results and Improved Designs

NASA Technical Reports Server (NTRS)

Canning, Francis; Winet, Ed; Ice, Bob; Melcher, Cory; Pesavento, Phil; Holmes, Alan; Butler, Carey; Cole, John; Campbell, Jonathan

2004-01-01

The outline of this viewgraph presentation on asymmetrical capacitor thruster development includes: 1) Test apparatus; 2) Devices tested; 3) Circuits used; 4) Data collected (Time averaged, Time resolved); 5) Patterns observed; 6) Force calculation; 7) Electrostatic modeling; 8) Understand it all.

Thermodynamics and Kinetics of Ligand Binding to Vitamin B-12a: A Laboratory Experiment

ERIC Educational Resources Information Center

Sweigart, D. A.

1975-01-01

Describes an open-ended experiment involving a bioinorganic system that provides the student a direct link between thermodynamics and kinetics. It utilizes a rapid reaction technique and requires one to clearly understand the relationship of experimental observable (absorbance) to a mechanism. (GS)

Mass properties measurement system: Dynamics and statics measurements

NASA Technical Reports Server (NTRS)

Doty, Keith L.

1993-01-01

This report presents and interprets experimental data obtained from the Mass Properties Measurement System (MPMS). Statics measurements yield the center-of-gravity of an unknown mass and dynamics measurements yield its inertia matrix. Observations of the MPMS performance has lead us to specific design criteria and an understanding of MPMS limitations.

First steps in experimental cancer evolution

PubMed Central

Taylor, Tiffany B; Johnson, Louise J; Jackson, Robert W; Brockhurst, Michael A; Dash, Philip R

2013-01-01

Evolutionary processes play a central role in the development, progression and response to treatment of cancers. The current challenge facing researchers is to harness evolutionary theory to further our understanding of the clinical progression of cancers. Central to this endeavour will be the development of experimental systems and approaches by which theories of cancer evolution can be effectively tested. We argue here that the experimental evolution approach – whereby evolution is observed in real time and which has typically employed microorganisms – can be usefully applied to cancer. This approach allows us to disentangle the ecological causes of natural selection, identify the genetic basis of evolutionary changes and determine their repeatability. Cell cultures used in cancer research share many of the desirable traits that make microorganisms ideal for studying evolution. As such, experimental cancer evolution is feasible and likely to give great insight into the selective pressures driving the evolution of clinically destructive cancer traits. We highlight three areas of evolutionary theory with importance to cancer biology that are amenable to experimental evolution: drug resistance, social evolution and resource competition. Understanding the diversity, persistence and evolution of cancers is vital for treatment and drug development, and an experimental evolution approach could provide strategic directions and focus for future research. PMID:23745144

Transport of nano-objects in narrow channels: influence of Brownian diffusion, confinement and particle nature

NASA Astrophysics Data System (ADS)

Liot, O.; Socol, M.; Garcia, L.; Thiéry, J.; Figarol, A.; Mingotaud, A. F.; Joseph, P.

2018-06-01

This paper presents experimental results about transport of dilute suspensions of nano-objects in silicon-glass micrometric and sub-micrometric channels. Two kinds of objects are used: solid, rigid latex beads and spherical capsule-shaped, soft polymersomes. They are tracked using fluorescence microscopy. Three aspects are studied: confinement (ratio between particle diameter and channel depth), Brownian diffusion and particle nature. The aim of this work is to understand how these different aspects affect the transport of suspensions in narrow channels and to understand the different mechanisms at play. Concerning the solid beads we observe the appearance of two regimes, one where the experimental mean velocity is close to the expected one and another where this velocity is lower. This is directly related to a competition between confinement, Brownian diffusion and advection. These two regimes are shown to be linked to the inhomogeneity of particles distribution in the channel depth, which we experimentally deduce from velocity distributions. This inhomogeneity appears during the entrance process into the sub-micrometric channels, as for hydrodynamic separation or deterministic lateral displacement. Concerning the nature of the particles we observed a shift of transition towards the second regime likely due to the relationships between shear stress and polymersomes mechanical properties which could reduce the inhomogeneity imposed by the geometry of our device.

Transport of nano-objects in narrow channels: influence of Brownian diffusion, confinement and particle nature.

PubMed

Liot, O; Socol, M; Garcia, L; Thiéry, J; Figarol, A; Mingotaud, A F; Joseph, P

2018-06-13

This paper presents experimental results about transport of dilute suspensions of nano-objects in silicon-glass micrometric and sub-micrometric channels. Two kinds of objects are used: solid, rigid latex beads and spherical capsule-shaped, soft polymersomes. They are tracked using fluorescence microscopy. Three aspects are studied: confinement (ratio between particle diameter and channel depth), Brownian diffusion and particle nature. The aim of this work is to understand how these different aspects affect the transport of suspensions in narrow channels and to understand the different mechanisms at play. Concerning the solid beads we observe the appearance of two regimes, one where the experimental mean velocity is close to the expected one and another where this velocity is lower. This is directly related to a competition between confinement, Brownian diffusion and advection. These two regimes are shown to be linked to the inhomogeneity of particles distribution in the channel depth, which we experimentally deduce from velocity distributions. This inhomogeneity appears during the entrance process into the sub-micrometric channels, as for hydrodynamic separation or deterministic lateral displacement. Concerning the nature of the particles we observed a shift of transition towards the second regime likely due to the relationships between shear stress and polymersomes mechanical properties which could reduce the inhomogeneity imposed by the geometry of our device.

Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling.

PubMed

Berthier, Ludovic; Charbonneau, Patrick; Coslovich, Daniele; Ninarello, Andrea; Ozawa, Misaki; Yaida, Sho

2017-10-24

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, because of the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally relevant timescales. In this work, we not only close the colossal gap between experiments and simulations but manage to create in silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation. Published under the PNAS license.

Breaking the glass ceiling: Configurational entropy measurements in extremely supercooled liquids

NASA Astrophysics Data System (ADS)

Berthier, Ludovic

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, due to the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally-relevant timescales. In this work we not only close the colossal gap between experiments and simulations but manage to create in-silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four independent estimates of their configurational entropy. These measurements consistently indicate that the steep entropy decrease observed in experiments is found in simulations even beyond the experimental glass transition. Our numerical results thus open a new observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation.

Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling

PubMed Central

Berthier, Ludovic; Charbonneau, Patrick; Coslovich, Daniele; Ninarello, Andrea; Ozawa, Misaki

2017-01-01

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, because of the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally relevant timescales. In this work, we not only close the colossal gap between experiments and simulations but manage to create in silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation. PMID:29073056

Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling

NASA Astrophysics Data System (ADS)

Berthier, Ludovic; Charbonneau, Patrick; Coslovich, Daniele; Ninarello, Andrea; Ozawa, Misaki; Yaida, Sho

2017-10-01

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, because of the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally relevant timescales. In this work, we not only close the colossal gap between experiments and simulations but manage to create in silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation.

In-Situ Observation of Horizontal Centrifugal Casting using a High-Speed Camera

NASA Astrophysics Data System (ADS)

Esaka, Hisao; Kawai, Kohsuke; Kaneko, Hiroshi; Shinozuka, Kei

2012-07-01

In order to understand the solidification process of horizontal centrifugal casting, experimental equipment for in-situ observation using transparent organic substance has been constructed. Succinonitrile-1 mass% water alloy was filled in the round glass cell and the glass cell was completely sealed. To observe the movement of equiaxed grains more clearly and to understand the effect of movement of free surface, a high-speed camera has been installed on the equipment. The most advantageous point of this equipment is that the camera rotates with mold, so that one can observe the same location of the glass cell. Because the recording rate could be increased up to 250 frames per second, the quality of movie was dramatically modified and this made easier and more precise to pursue the certain equiaxed grain. The amplitude of oscillation of equiaxed grain ( = At) decreased as the solidification proceeded.

The influence of two imidazolium-based ionic liquids on the structure and activity of glucose oxidase: Experimental and theoretical studies.

PubMed

Janati-Fard, Fatemeh; Housaindokht, Mohammad Reza; Monhemi, Hassan; Esmaeili, Abbas Ali; Nakhaei Pour, Ali

2018-07-15

The search for ionic liquids (ILs) with biochemical and biomedical applications has recently gained great attention. IL containing solvents can change the structure, stability and function of proteins. The study of protein conformation in ILs is important to understand enzymatic activity. In this work, conformational stability and activity of the enzyme in two imidazolium-based ILs (1-butyl 3-methyl-imidozolium and 1-hexyl 3-methyl-imidozoliumbromides) were investigated. We treated glucose oxidase as dimer-active enzyme in different IL concentration and seen that GOx activity was inhibited in the presence of ILs. Our experimental data showed that inhibition of activity and reduction of enzyme tertiary structure are more for hexyl than butyl derivative. These experimental results are in agreement with foregoing observations. To find a possible mechanism, a series of molecular dynamics simulation of the enzyme were performed at different IL concentration. The structure parameters obtained from MD simulation showed that conformational changes at the active site and FAD-binding site support the hypothesis of enzyme inhibition at the presence of ILs. Root mean square deviation and fluctuation calculations indicated that the enzyme has stable conformation at higher IL concentration, in agreement with experimental observation. But hexyl derivative has a much stronger stabilization effect on the protein structure. In summary, the present study could improve our understanding of the molecular mechanism about the ionic liquid effects on the structure and activity of proteins. Copyright © 2018 Elsevier B.V. All rights reserved.

Velocity changes at Volcán de Colima: Seismic and Experimental observations

NASA Astrophysics Data System (ADS)

Lamb, Oliver; Lavallée, Yan; De Angelis, Silvio; Varley, Nick; Reyes-Dávila, Gabriel; Arámbula-Mendoza, Raúl; Hornby, Adrian; Wall, Richard; Kendrick, Jackie

2016-04-01

Immediately prior to dome-building eruptions, volcano-seismic swarms are a direct consequence of strain localisation in the ascending magma. A deformation mechanism map of magma subjected to strain localisation will help develop accurate numerical models, which, coupled to an understanding of the mechanics driving monitored geophysical signals prior to lava eruption, will enhance forecasts. Here we present how seismic data from Volcán de Colima, Mexico, is combined with experimental work to give insights into fracturing in and around magma. Volcán de Colima is a dome-forming volcano that has been almost-continuously erupting since November 1998. We use coda-wave interferometry to quantify small changes in seismic velocity structure between pairs of similar earthquakes, employing waveforms from clusters of repeating earthquakes. The changes in all pairs of events were then used together to create a continuous function of velocity change at all stations within 7 km of the volcano from October to December 1998. We complement our seismic data with acoustic emission data from tensional experiments using samples collected at Volcán de Colima. Decreases in velocity and frequency reflect changes in the sample properties prior to failure. By comparing experimental and seismic observations, we may place constraints on the conditions of the natural seismogenic processes. Using a combination of field and experimental data promises a greater understanding of the processes affecting the rise of magma during an eruption. This will help with the challenge of forecasting and hazard mitigation during dome-forming eruptions worldwide.

Aerobiology: Experimental Considerations, Observations, and Future Tools

PubMed Central

Haddrell, Allen E.

2017-01-01

ABSTRACT Understanding airborne survival and decay of microorganisms is important for a range of public health and biodefense applications, including epidemiological and risk analysis modeling. Techniques for experimental aerosol generation, retention in the aerosol phase, and sampling require careful consideration and understanding so that they are representative of the conditions the bioaerosol would experience in the environment. This review explores the current understanding of atmospheric transport in relation to advances and limitations of aerosol generation, maintenance in the aerosol phase, and sampling techniques. Potential tools for the future are examined at the interface between atmospheric chemistry, aerosol physics, and molecular microbiology where the heterogeneity and variability of aerosols can be explored at the single-droplet and single-microorganism levels within a bioaerosol. The review highlights the importance of method comparison and validation in bioaerosol research and the benefits that the application of novel techniques could bring to increasing the understanding of aerobiological phenomena in diverse research fields, particularly during the progression of atmospheric transport, where complex interdependent physicochemical and biological processes occur within bioaerosol particles. PMID:28667111

Investigating and Modeling Ecosystem Response to an Experimental and a Natural Ice Storm

NASA Astrophysics Data System (ADS)

Fakhraei, H.; Driscoll, C. T.; Rustad, L.; Campbell, J. L.; Groffman, P.; Fahey, T.; Likens, G.; Swaminathan, R.

2017-12-01

Our understanding of ecosystem response to the extreme events is generally limited to rare observations from the natural historical events. However, investigating extreme events under controlled conditions can improve our understanding of these natural phenomena. A novel field experiment was conducted in a northern hardwood forest at the Hubbard Brook Experimental Forest in New Hampshire in the northeastern United States to quantify the influence of ice storms on the ecological processes. During subfreezing conditions in the winters of 2016 and 2017, water from a nearby stream was pumped and sprayed on the canopy of eight experimental plots to accrete ice to a targeted thickness on the canopy. The experiment was conducted at three levels of icing thickness (0.25, 0.5, 0.75 in.) in 2016 comparable to the naturally occurring 1998 ice storm and a second 0.5 in. treatment 2017 which were compared with reference plots. The most notable response of the icing treatments was a marked increase in fine and course litter fall which increased exponentially with increases in the icing thickness. Post-treatment openings in the canopy caused short-term increases in soil temperature in the ice-treatment plots compared to the reference plots. No response from the ice storm treatments were detected for soil moisture, net N mineralization, net nitrification, or denitrification after both natural and experimental ice storm. In contrast to the marked increase in the stream water nitrate after the natural occurring 1998 ice storm, we have not observed any significant change in soil solution N concentrations in the experimental ice storm treatments. Inconsistency in the response between the natural and experimental ice storm is likely due to differences in geophysical characteristics of the study sites including slope and lateral uptake of nutrient by the trees outside the experimental plots. In order to evaluate the long-term impacts of ice storms on northern hardwood forests, we used the biogeochemical model, PnET-BGC. The model was calibrated to the study watersheds using observations from the natural and experimental ice storms. Future projections for ice storm events were estimated from an advanced climate model and applied to the calibrated PnET-BGC model to simulate future impacts of ice storms on the northern hardwood forests.

Experimentally Observed Electrical Durability of 4H-SiC JFET ICs Operating from 500 C to 700 C

NASA Technical Reports Server (NTRS)

Neudeck, Philip G.; Spry, David J.; Chen, Liangyu; Lukco, Dorothy; Chang, Carl W.; Beheim, Glenn M.

2016-01-01

This ECSCRM 2016 submission presents further electrical testing and microscopic post-failure studies aimed at more comprehensive understanding of the durability limits of this extreme temperature IC technology. The results summarized represent an unprecedented combination of T 500 C semiconductor IC durability and functionality.

The Beaks of Finches & the Tool Analogy: Use with Care

ERIC Educational Resources Information Center

Milne, Catherine

2008-01-01

Analogies are an integral feature of scientific theories, like evolution. They are developed to support explanations, proposed on the basis of evidence collected from experimental studies, field studies, and other observational studies. They map a known source or process to an unknown or target with the goal of helping educators understand the…

Enhancing the Introductory Astronomical Experience with the Use of a Tablet and Telescope

ERIC Educational Resources Information Center

Gill, Robert M.; Burin, Michael J.

2013-01-01

College and university general education (GE) classes are designed to broaden the understanding of all college and university students in areas outside their major interest. However, most GE classes are lecture type and do not facilitate hands-on experimental or observational activities related to the specific subject matter. Utilizing astronomy…

Facilitating Preschoolers' Scientific Knowledge Construction via Computer Games Regarding Light and Shadow: The Effect of the Prediction-Observation-Explanation (POE) Strategy

NASA Astrophysics Data System (ADS)

Hsu, Chung-Yuan; Tsai, Chin-Chung; Liang, Jyh-Chong

2011-10-01

Educational researchers have suggested that computer games have a profound influence on students' motivation, knowledge construction, and learning performance, but little empirical research has targeted preschoolers. Thus, the purpose of the present study was to investigate the effects of implementing a computer game that integrates the prediction-observation-explanation (POE) strategy (White and Gunstone in Probing understanding. Routledge, New York, 1992) on facilitating preschoolers' acquisition of scientific concepts regarding light and shadow. The children's alternative conceptions were explored as well. Fifty participants were randomly assigned into either an experimental group that played a computer game integrating the POE model or a control group that played a non-POE computer game. By assessing the students' conceptual understanding through interviews, this study revealed that the students in the experimental group significantly outperformed their counterparts in the concepts regarding "shadow formation in daylight" and "shadow orientation." However, children in both groups, after playing the games, still expressed some alternative conceptions such as "Shadows always appear behind a person" and "Shadows should be on the same side as the sun."

DFT:B3LYP/3-21G theoretical insights on the confocal Raman experimental observations in skin dermis of healthy young, healthy elderly, and diabetic elderly women

NASA Astrophysics Data System (ADS)

Téllez Soto, Claudio Alberto; Pereira, Liliane; dos Santos, Laurita; Rajasekaran, Ramu; Fávero, Priscila; Martin, Airton Abrahão

2016-12-01

In the confocal Raman spectra of skin dermis, the band area in the spectral region of proline and hydroxyproline varies according to the age and health condition of the volunteers, classified as healthy young women, healthy elderly women, and diabetic elderly women. Another observation refers to the intensity variation and negative Raman shift of the amide I band. To understand these effects, we adopted a model system using the DFT/B3LYP:3-21G procedure, considering the amino acid chain formed by glycine, hydroxyproline, proline, and alanine, which interacts with two and six water molecules. Through these systems, polarizability variations were analyzed to correlate its values with the observed Raman intensities of the three groups of volunteers and to assign the vibrational spectra of the skin dermis. As a way to correlate other experimental trends, we propose a model of chemical reaction of water interchange between the bonding amino acids, in which water molecules are attached with glucose by hydrogen bonds. The theoretical results are in accordance with the observed experimental trends.

The Dynamic Architectural and Epigenetic Nuclear Landscape: Developing the Genomic Almanac of Biology and Disease

PubMed Central

Tai, Phillip W. L.; Zaidi, Sayyed K.; Wu, Hai; Grandy, Rodrigo A.; Montecino, Martin M.; van Wijnen, André J.; Lian, Jane B.; Stein, Gary S.; Stein, Janet L.

2014-01-01

Compaction of the eukaryotic genome into the confined space of the cell nucleus must occur faithfully throughout each cell cycle to retain gene expression fidelity. For decades, experimental limitations to study the structural organization of the interphase nucleus restricted our understanding of its contributions towards gene regulation and disease. However, within the past few years, our capability to visualize chromosomes in vivo with sophisticated fluorescence microscopy, and to characterize chromosomal regulatory environments via massively-parallel sequencing methodologies have drastically changed how we currently understand epigenetic gene control within the context of three-dimensional nuclear structure. The rapid rate at which information on nuclear structure is unfolding brings challenges to compare and contrast recent observations with historic findings. In this review, we discuss experimental breakthroughs that have influenced how we understand and explore the dynamic structure and function of the nucleus, and how we can incorporate historical perspectives with insights acquired from the ever-evolving advances in molecular biology and pathology. PMID:24242872

Observation of Multimode Quantum Correlations in Fiber Optical Solitons

NASA Astrophysics Data System (ADS)

Spälter, S.; Korolkova, N.; König, F.; Sizmann, A.; Leuchs, G.

1998-07-01

Quantum correlations of photon numbers in different spectral components of ultrashort optical solitons have been observed experimentally. These correlations are crucial for the understanding and characterization of the internal quantum structure of soliton pulses and contribute significantly to soliton squeezing by spectral filtering. The accessible information on the nonclassical state of the correlated spectral components is discussed with the example of two modes. The method may be generalized to obtain a complete quantum description of a multimode field.

The impact of recent advances in laboratory astrophysics on our understanding of the cosmos.

PubMed

Savin, D W; Brickhouse, N S; Cowan, J J; Drake, R P; Federman, S R; Ferland, G J; Frank, A; Gudipati, M S; Haxton, W C; Herbst, E; Profumo, S; Salama, F; Ziurys, L M; Zweibel, E G

2012-03-01

An emerging theme in modern astrophysics is the connection between astronomical observations and the underlying physical phenomena that drive our cosmos. Both the mechanisms responsible for the observed astrophysical phenomena and the tools used to probe such phenomena-the radiation and particle spectra we observe-have their roots in atomic, molecular, condensed matter, plasma, nuclear and particle physics. Chemistry is implicitly included in both molecular and condensed matter physics. This connection is the theme of the present report, which provides a broad, though non-exhaustive, overview of progress in our understanding of the cosmos resulting from recent theoretical and experimental advances in what is commonly called laboratory astrophysics. This work, carried out by a diverse community of laboratory astrophysicists, is increasingly important as astrophysics transitions into an era of precise measurement and high fidelity modeling.

Experimental human influenza: observations from studies of influenza antivirals.

PubMed

Hayden, Frederick G

2012-01-01

Randomized, placebo-controlled trials have been conducted for nearly five decades in experimentally induced human influenza infections to assess the effectiveness, tolerability and pharmacological properties of influenza antivirals. The results of such studies have not only provided key proof-of-concept data to facilitate drug development but also contributed to our understanding of influenza pathogenesis and transmission. The lack of availability of contemporary, safety-tested virus inoculation pools in recent years needs to be resolved in order to avoid hindering the development of new drugs and vaccines.

Numerical modeling of experimental observations on gas formation and multi-phase flow of carbon dioxide in subsurface formations

NASA Astrophysics Data System (ADS)

Pawar, R.; Dash, Z.; Sakaki, T.; Plampin, M. R.; Lassen, R. N.; Illangasekare, T. H.; Zyvoloski, G.

2011-12-01

One of the concerns related to geologic CO2 sequestration is potential leakage of CO2 and its subsequent migration to shallow groundwater resources leading to geochemical impacts. Developing approaches to monitor CO2 migration in shallow aquifer and mitigate leakage impacts will require improving our understanding of gas phase formation and multi-phase flow subsequent to CO2 leakage in shallow aquifers. We are utilizing an integrated approach combining laboratory experiments and numerical simulations to characterize the multi-phase flow of CO2 in shallow aquifers. The laboratory experiments involve a series of highly controlled experiments in which CO2 dissolved water is injected in homogeneous and heterogeneous soil columns and tanks. The experimental results are used to study the effects of soil properties, temperature, pressure gradients and heterogeneities on gas formation and migration. We utilize the Finite Element Heat and Mass (FEHM) simulator (Zyvoloski et al, 2010) to numerically model the experimental results. The numerical models capture the physics of CO2 exsolution, multi-phase fluid flow as well as sand heterogeneity. Experimental observations of pressure, temperature and gas saturations are used to develop and constrain conceptual models for CO2 gas-phase formation and multi-phase CO2 flow in porous media. This talk will provide details of development of conceptual models based on experimental observation, development of numerical models for laboratory experiments and modelling results.

Effect of doping of tin on optoelectronic properties of indium oxide: DFT study

NASA Astrophysics Data System (ADS)

Tripathi, Madhvendra Nath

2015-06-01

Indium tin oxide is widely used transparent conductor. Experimentally observed that 6% tin doping in indium oxide is suitable for optoelectronic applications and more doping beyond this limit degrades the optoelectronic property. The stoichiometry (In32-xSnxO48+x/2; x=0-6) is taken to understand the change in lattice parameter, electronic structure, and optical property of ITO. It is observed that lattice parameter increases and becomes constant after 6% tin doping that is in good agreement of the experimental observation. The electronic structure calculation shows that the high tin doping in indium oxide adversely affects the dispersive nature of the bottom of conduction band of pure indium oxide and decreases the carrier mobility. Optical calculations show that transmittance goes down upto 60% for the tin concentration more than 6%. The present paper shows that how more than 6% tin doping in indium oxide adversely affects the optoelectronic property of ITO.

Dynamic fluctuation of proteins watched in real time

PubMed Central

Ormos, Pál

2008-01-01

The dynamic nature of protein function is a fundamental concept in the physics of proteins. Although the basic general ideas are well accepted most experimental evidence has an indirect nature. The detailed characterization of the dynamics is necessary for the understanding in detail. The dynamic fluctuations thought crucial for the function span an extremely broad time, starting from the picosecond regime. Recently, a few new experimental techniques emerged that permit the observation of dynamical phenomena directly. Notably, pulsed infrared (IR) spectroscopy has been applied with great success to observe structural changes with picosecond time resolution. Using two-dimensional-IR vibrational echo chemical exchange spectroscopy Ishikawa and co-workers [Ishikawa et al. (2008), Proc. Natl. Acad. Sci. U.S.A. 101, 14402–14407] managed to observe the transition between well defined conformational substrates of carbonmonoxy myoglobin directly. This is an important step in improving our insight into the details of protein function. PMID:19436491

Understanding the effect of side groups in ionic liquids on carbon-capture properties: a combined experimental and theoretical effort

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, Fangyong; Lartey, Michael; Damodaran, Krishnan

2013-01-01

Ionic liquids are an emerging class of materials with applications in a variety of fields. Steady progress has been made in the creation of ionic liquids tailored to specific applications. However, the understanding of the underlying structure–property relationships has been slower to develop. As a step in the effort to alleviate this deficiency, the influence of side groups on ionic liquid properties has been studied through an integrated approach utilizing synthesis, experimental determination of properties, and simulation techniques. To achieve this goal, a classical force field in the framework of OPLS/Amber force fields has been developed to predict ionic liquidmore » properties accurately. Cu(I)-catalyzed click chemistry was employed to synthesize triazolium-based ionic liquids with diverse side groups. Values of densities were predicted within 3% of experimental values, whereas self-diffusion coefficients were underestimated by about an order of magnitude though the trends were in excellent agreement, the activation energy calculated in simulation correlates well with experimental values. The predicted Henry coefficient for CO{sub 2} solubility reproduced the experimentally observed trends. This study highlights the importance of integrating experimental and computational approaches in property prediction and materials development, which is not only useful in the development of ionic liquids for CO{sub 2} capture but has application in many technological fields.« less

Understanding the effect of side groups in ionic liquids on carbon-capture properties: a combined experimental and theoretical effort

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, Fangyong; Lartey, Michael; Damodaran, Krishnan

Ionic liquids are an emerging class of materials with applications in a variety of fields. Steady progress has been made in the creation of ionic liquids tailored to specific applications. However, the understanding of the underlying structure–property relationships has been slower to develop. As a step in the effort to alleviate this deficiency, the influence of side groups on ionic liquid properties has been studied through an integrated approach utilizing synthesis, experimental determination of properties, and simulation techniques. To achieve this goal, a classical force field in the framework of OPLS/Amber force fields has been developed to predict ionic liquidmore » properties accurately. Cu(I)-catalyzed click chemistry was employed to synthesize triazolium-based ionic liquids with diverse side groups. Values of densities were predicted within 3% of experimental values, whereas self-diffusion coefficients were underestimated by about an order of magnitude though the trends were in excellent agreement, the activation energy calculated in simulation correlates well with experimental values. The predicted Henry coefficient for CO{sub 2} solubility reproduced the experimentally observed trends. This study highlights the importance of integrating experimental and computational approaches in property prediction and materials development, which is not only useful in the development of ionic liquids for CO{sub 2} capture but has application in many technological fields.« less

Multi-code analysis of scrape-off layer filament dynamics in MAST

NASA Astrophysics Data System (ADS)

Militello, F.; Walkden, N. R.; Farley, T.; Gracias, W. A.; Olsen, J.; Riva, F.; Easy, L.; Fedorczak, N.; Lupelli, I.; Madsen, J.; Nielsen, A. H.; Ricci, P.; Tamain, P.; Young, J.

2016-11-01

Four numerical codes are employed to investigate the dynamics of scrape-off layer filaments in tokamak relevant conditions. Experimental measurements were taken in the MAST device using visual camera imaging, which allows the evaluation of the perpendicular size and velocity of the filaments, as well as the combination of density and temperature associated with the perturbation. A new algorithm based on the light emission integrated along the field lines associated with the position of the filament is developed to ensure that it is properly detected and tracked. The filaments are found to have velocities of the order of 1~\\text{km}~{{\\text{s}}-1} , a perpendicular diameter of around 2-3 cm and a density amplitude 2-3.5 times the background plasma. 3D and 2D numerical codes (the STORM module of BOUT++, GBS, HESEL and TOKAM3X) are used to reproduce the motion of the observed filaments with the purpose of validating the codes and of better understanding the experimental data. Good agreement is found between the 3D codes. The seeded filament simulations are also able to reproduce the dynamics observed in experiments with accuracy up to the experimental errorbar levels. In addition, the numerical results showed that filaments characterised by similar size and light emission intensity can have quite different dynamics if the pressure perturbation is distributed differently between density and temperature components. As an additional benefit, several observations on the dynamics of the filaments in the presence of evolving temperature fields were made and led to a better understanding of the behaviour of these coherent structures.

Understanding the Doppler effect by analysing spectrograms of the sound of a passing vehicle

NASA Astrophysics Data System (ADS)

Lubyako, Dmitry; Martinez-Piedra, Gordon; Ushenin, Arthur; Denvir, Patrick; Dunlop, John; Hall, Alex; Le Roux, Gus; van Someren, Laurence; Weinberger, Harvey

2017-11-01

The purpose of this paper is to demonstrate how the Doppler effect can be analysed to deduce information about a moving source of sound waves. Specifically, we find the speed of a car and the distance of its closest approach to an observer using sound recordings from smartphones. A key focus of this paper is how this can be achieved in a classroom, both theoretically and experimentally, to deepen students’ understanding of the Doppler effect. Included are our own experimental data (48 sound recordings) to allow others to reproduce the analysis, if they cannot repeat the whole experiment themselves. In addition to its educational purpose, this paper examines the percentage errors in our results. This enabled us to determine sources of error, allowing those conducting similar future investigations to optimize their accuracy.

Decision dynamics of departure times: Experiments and modeling

NASA Astrophysics Data System (ADS)

Sun, Xiaoyan; Han, Xiao; Bao, Jian-Zhang; Jiang, Rui; Jia, Bin; Yan, Xiaoyong; Zhang, Boyu; Wang, Wen-Xu; Gao, Zi-You

2017-10-01

A fundamental problem in traffic science is to understand user-choice behaviors that account for the emergence of complex traffic phenomena. Despite much effort devoted to theoretically exploring departure time choice behaviors, relatively large-scale and systematic experimental tests of theoretical predictions are still lacking. In this paper, we aim to offer a more comprehensive understanding of departure time choice behaviors in terms of a series of laboratory experiments under different traffic conditions and feedback information provided to commuters. In the experiment, the number of recruited players is much larger than the number of choices to better mimic the real scenario, in which a large number of commuters will depart simultaneously in a relatively small time window. Sufficient numbers of rounds are conducted to ensure the convergence of collective behavior. Experimental results demonstrate that collective behavior is close to the user equilibrium, regardless of different scales and traffic conditions. Moreover, the amount of feedback information has a negligible influence on collective behavior but has a relatively stronger effect on individual choice behaviors. Reinforcement learning and Fermi learning models are built to reproduce the experimental results and uncover the underlying mechanism. Simulation results are in good agreement with the experimentally observed collective behaviors.

Fast self-diffusion of ions in CH 3 NH 3 PbI 3 : the interstiticaly mechanism versus vacancy-assisted mechanism

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Ji-Hui; Yin, Wan-Jian; Park, Ji-Sang

2016-01-01

The stability of organic-inorganic halide perovskites is a major challenge for their applications and has been extensively studied. Among the possible underlying reasons, ion self-diffusion has been inferred to play important roles. While theoretical studies congruously support that iodine is more mobile, experimental studies only observe the direct diffusion of the MA ion and possible diffusion of iodine. The discrepancy may result from the incomplete understanding of ion diffusion mechanisms. With the help of first-principles calculations, we studied ion diffusion in CH3NH3PbI3 (MAPbI3) through not only the vacancy-assisted mechanisms presumed in previous theoretical studies, but also the neglected interstiticaly mechanisms.more » We found that compared to the diffusion through the vacancy-assisted mechanism, MA ion diffusion through the interstiticaly mechanism has a much smaller barrier which could explain experimental observations. For iodine diffusion, both mechanisms can yield relatively small barriers. Depending on the growth conditions, defect densities of vacancies and interstitials can vary and so do the diffusion species as well as diffusion mechanisms. Our work thus supports that both MA and iodine ion diffusion could contribute to the performance instability of MAPbI3. While being congruous with experimental results, our work fills the research gap by providing a full understanding of ion diffusion in halide perovskites.« less

Measurements of Ground-Level Muons at Two Geomagnetic Locations

NASA Astrophysics Data System (ADS)

Kremer, J.; Boezio, M.; Ambriola, M. L.; Barbiellini, G.; Bartalucci, S.; Bellotti, R.; Bergström, D.; Bravar, U.; Cafagna, F.; Carlson, P.; Casolino, M.; Castellano, M.; Ciacio, F.; Circella, M.; de Marzo, C.; de Pascale, M. P.; Francke, T.; Finetti, N.; Golden, R. L.; Grimani, C.; Hof, M.; Menn, W.; Mitchell, J. W.; Morselli, A.; Ormes, J. F.; Papini, P.; Piccardi, S.; Picozza, P.; Ricci, M.; Schiavon, P.; Simon, M.; Sparvoli, R.; Spillantini, P.; Stephens, S. A.; Stochaj, S. J.; Streitmatter, R. E.; Suffert, M.; Vacchi, A.; Weber, N.; Zampa, N.

1999-11-01

We report new measurements of the muon spectra and the muon charge ratio at ground level in the momentum range from 200 MeV/c to 120 GeV/c for two different geomagnetic locations. Above 0.9 GeV/c the absolute spectra measured in the two locations are in good agreement and are about 10% to 15% lower than previous experimental results. At lower momenta the data show latitude dependent geomagnetic effects. These observations are important for the understanding of the observed neutrino anomaly.

Neoclassical Theory and Its Applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shaing, Ker-Chung

2015-11-20

The grant entitled Neoclassical Theory and Its Applications started on January 15 2001 and ended on April 14 2015. The main goal of the project is to develop neoclassical theory to understand tokamak physics, and employ it to model current experimental observations and future thermonuclear fusion reactors. The PI had published more than 50 papers in refereed journals during the funding period.

Polymers and Cross-Linking: A CORE Experiment to Help Students Think on the Submicroscopic Level

ERIC Educational Resources Information Center

Bruce, Mitchell R. M.; Bruce, Alice E.; Avargil, Shirly; Amar, Francois G.; Wemyss, Thomas M.; Flood, Virginia J.

2016-01-01

The Polymers and Cross-Linking experiment is presented via a new three phase learning cycle: CORE (Chemical Observations, Representations, Experimentation), which is designed to model productive chemical inquiry and to promote a deeper understanding about the chemistry operating at the submicroscopic level. The experiment is built on two familiar…

Implementation of cooperative learning model type STAD with RME approach to understanding of mathematical concept student state junior high school in Pekanbaru

NASA Astrophysics Data System (ADS)

Nurhayati, Dian Mita; Hartono

2017-05-01

This study aims to determine whether there is a difference in the ability of understanding the concept of mathematics between students who use cooperative learning model Student Teams Achievement Division type with Realistic Mathematic Education approach and students who use regular learning in seventh grade SMPN 35 Pekanbaru. This study was quasi experiments with Posttest-only Control Design. The populations in this research were all the seventh grade students in one of state junior high school in Pekanbaru. The samples were a class that is used as the experimental class and one other as the control class. The process of sampling is using purposive sampling technique. Retrieval of data in this study using the documentation, observation sheets, and test. The test use t-test formula to determine whether there is a difference in student's understanding of mathematical concepts. Before the t-test, should be used to test the homogeneity and normality. Based in the analysis of these data with t0 = 2.9 there is a difference in student's understanding of mathematical concepts between experimental and control class. Percentage of students experimental class with score more than 65 was 76.9% and 56.4% of students control class. Thus be concluded, the ability of understanding mathematical concepts students who use the cooperative learning model type STAD with RME approach better than students using the regular learning. So that cooperative learning model type STAD with RME approach is well used in learning process.

Anomalous magnetotransport behavior in Fe-doped MnNiGe alloys

NASA Astrophysics Data System (ADS)

Dutta, P.; Pramanick, S.; Singh, Vijay; Major, Dan Thomas; Das, D.; Chatterjee, S.

2016-04-01

The electrical dc transport properties of hexagonal magnetic equiatomic alloys of nominal composition Mn1 -xFexNiGe (x =0.2 and0.25 ) have been investigated experimentally as well as theoretically using first-principles electronic structure calculations. Thermal hysteresis in the magnetization data indicates that the alloys undergo a first-order martensitic transition. Both the alloys show unusual nonmetallic resistivity behavior and a noticeable amount of training effect in resistivity when thermally cycled through the first-order martensitic transition. We observe moderate negative magnetoresistance (˜-11.5 % for 150 kOe) at 5 K (well below the martensitic transition temperature) associated with clear virgin line effect for both the alloys. We have adapted different flavors of density functional theory approach to understand the experimentally observed nonmetallic transport behavior.

The effects of a technology-enhanced inquiry instructional model on students' understanding of science in Thailand

NASA Astrophysics Data System (ADS)

Lertwanasiriwan, Chaiwuti

The study examined the effects of a technology-enhanced inquiry instructional model on students' understanding of science in Thailand. A mixed quantitative research design was selected for the research design. A pretest-posttest control-group design was implemented for the experimental research. A causal-comparative design using questionnaire and classroom observation was employed for the non-experimental research. Two sixth-grade classrooms at a medium-sized public school in Bangkok, Thailand were randomly selected for the study - one as the control group and the other as the experimental group. The 34 students in the control group only received the inquiry instructional model, while the 35 students in the experimental group received the technology-enhanced inquiry instructional model. Both groups of students had been taught by the same science teacher for 15 weeks (three periods per week). The results and findings from the study seemed to indicate that both the technology-enhanced inquiry instructional model and the inquiry instructional model significantly improve students' understanding of science. However, it might be claimed that students receiving the technology-enhanced inquiry instructional model gain more than students only receiving the inquiry instructional model. In addition, the technology-enhanced inquiry instructional model seemed to support the assessment during the 5E Model's evaluation stage. Most students appeared to have very good attitudes toward using it in the science classroom suggesting that the technology-enhanced inquiry instructional model motivates students to learn science.

Synthetic electromagnetic knot in a three-dimensional skyrmion

PubMed Central

Lee, Wonjae; Gheorghe, Andrei H.; Tiurev, Konstantin; Ollikainen, Tuomas; Möttönen, Mikko; Hall, David S.

2018-01-01

Classical electromagnetism and quantum mechanics are both central to the modern understanding of the physical world and its ongoing technological development. Quantum simulations of electromagnetic forces have the potential to provide information about materials and systems that do not have conveniently solvable theoretical descriptions, such as those related to quantum Hall physics, or that have not been physically observed, such as magnetic monopoles. However, quantum simulations that simultaneously implement all of the principal features of classical electromagnetism have thus far proved elusive. We experimentally realize a simulation in which a charged quantum particle interacts with the knotted electromagnetic fields peculiar to a topological model of ball lightning. These phenomena are induced by precise spatiotemporal control of the spin field of an atomic Bose-Einstein condensate, simultaneously creating a Shankar skyrmion—a topological excitation that was theoretically predicted four decades ago but never before observed experimentally. Our results reveal the versatile capabilities of synthetic electromagnetism and provide the first experimental images of topological three-dimensional skyrmions in a quantum system. PMID:29511735

Numerical modeling of the early interaction of a planar shock with a dense particle field

NASA Astrophysics Data System (ADS)

Regele, Jonathan; Blanquart, Guillaume

2011-11-01

Dense compressible multiphase flows are of interest for multiphase turbomachinary and energetic material detonations. Still, there is little understanding of the detailed interaction mechanisms between shock waves and dense (particle volume fraction αd > 0 . 001) particle fields. A recent experimental study [Wagner et al, AIAA Aero. Sci., Orlando, 2011-188] has focused on the impingement of a planar shock wave on a dense particle curtain. In the present work, numerical solutions of the Euler equations in one and two dimensions are performed for a planar shock wave impinging on a fixed particle curtain and are compared to the experimental data for early times. Comparison of the one- and two-dimensional results demonstrate that the one-dimensional description captures the large scale flow behavior, but is inadequate to capture all the details observed in the experiments. The two-dimensional solutions are shown to reproduce the experimentally observed flow structures and provide insight into how these details originate.

Solid iron-hydrogen alloys under high pressure by first principles

NASA Astrophysics Data System (ADS)

Umemoto, K.; Hirose, K.

2016-12-01

Hydrogen and iron are two of major constituents of the Earth and planetary interiors. The crystal structure of solid FeHx is one of the most fundamental information in order to understand properties of planetary cores. It is well known that FeH takes closed-packed structures: dhcp, hcp, and fcc. Recently, hydrogen-rich phases, FeH2 and FeH3, were experimentally synthesized [1]. Although a tetragonal structure of FeH2 was proposed, it could not explain experimental observations, energetic stability and compression curve. Here we propose a new crystal structure of FeH2. The symmetry of the new structure is completely identical to that in originally proposed one, but the hydrogen sublattice which cannot be directly determined by XRD experiments is different. It will be demonstrated by first principles that the new structure can be fully consistent with experimental observations. [1] C. M. Pépin, A. Dewaele, G. Geneste, P. Loubeyre, and M. Mezouar, Phys. Rev. Lett. 113, 265504 (2014).

Enhancing undergraduate students' chemistry understanding through project-based learning in an IT environment

NASA Astrophysics Data System (ADS)

Barak, Miri; Dori, Yehudit Judy

2005-01-01

Project-based learning (PBL), which is increasingly supported by information technologies (IT), contributes to fostering student-directed scientific inquiry of problems in a real-world setting. This study investigated the integration of PBL in an IT environment into three undergraduate chemistry courses, each including both experimental and control students. Students in the experimental group volunteered to carry out an individual IT-based project, whereas the control students solved only traditional problems. The project included constructing computerized molecular models, seeking information on scientific phenomena, and inquiring about chemistry theories. The effect of the PBL was examined both quantitatively and qualitatively. The quantitative analysis was based on a pretest, a posttest, and a final examination, which served for comparing the learning gains of the two research groups. For the qualitative analysis, we looked into the experimental students' performance, as reflected by the projects they had submitted. In addition, think alou interviews and observations helped us gain insight into the students' conceptual understanding of molecular structures. Students who participated in the IT-enhanced PBL performed significantly better than their control classmates not only on their posttest but also on their course final examination. Analyzing the qualitative findings, we concluded that the construction of computerized models and Web-based inquiry activities helped promote students' ability of mentally traversing the four levels of chemistry understanding: symbolic, macroscopic, microscopic, and process. More generally, our results indicated that incorporating IT-rich PBL into freshmen courses can enhance students' understanding of chemical concepts, theories, and molecular structures.

[Fractal research of neurite growth in immunofluorescent images].

PubMed

Tang, Min; Wang, Huinan

2008-12-01

Fractal dimension has been widely used in medical images processing and analysis. The neurite growth of cultured dorsal root ganglion (DRG) was detected by fluorescent immunocytochemistry treated with nerve regeneration factor (0.1, 0.5, 2.0 mg/L). A novel method based on triangular prism surface area (TPSA) was introduced and adopted to calculate the fractal dimension of the two-dimensional immunofluorescent images. Experimental results demonstrate that this method is easy to understand and convenient to operate, and the quantititve results are concordant with the observational findings under microscope. This method can be guidelines for analyzing and deciding experimental results.

Mechanics of plant fruit hooks

PubMed Central

Chen, Qiang; Gorb, Stanislav N.; Gorb, Elena; Pugno, Nicola

2013-01-01

Hook-like surface structures, observed in some plant species, play an important role in the process of plant growth and seed dispersal. In this study, we developed an elastic model and further used it to investigate the mechanical behaviour of fruit hooks in four plant species, previously measured in an experimental study. Based on Euler–Bernoulli beam theory, the force–displacement relationship is derived, and its Young's modulus is obtained. The result agrees well with the experimental data. The model aids in understanding the mechanics of hooks, and could be used in the development of new bioinspired Velcro-like materials. PMID:23365190

Compressive Loading and Modeling of Stitched Composite Stiffeners

NASA Technical Reports Server (NTRS)

Leone, Frank A., Jr.; Jegley, Dawn C.; Linton, Kim A.

2016-01-01

A series of single-frame and single-stringer compression tests were conducted at NASA Langley Research Center on specimens harvested from a large panel built using the Pultruded Rod Stitched Efficient Unitized Structure (PRSEUS) concept. Different frame and stringer designs were used in fabrication of the PRSEUS panel. In this paper, the details of the experimental testing of single-frame and single-stringer compression specimens are presented, as well as discussions on the performance of the various structural configurations included in the panel. Nonlinear finite element models were developed to further understand the failure processes observed during the experimental campaign.

Numerical modelling and experimental study of liquid evaporation during gel formation

NASA Astrophysics Data System (ADS)

Pokusaev, B. G.; Khramtsov, D. P.

2017-11-01

Gels are promising materials in biotechnology and medicine as a medium for storing cells for bioprinting applications. Gel is a two-phase system consisting of solid medium and liquid phase. Understanding of a gel structure evolution and gel aging during liquid evaporation is a crucial step in developing new additive bioprinting technologies. A numerical and experimental study of liquid evaporation was performed. In experimental study an evaporation process of an agarose gel layer located on Petri dish was observed and mass difference was detected using electronic scales. Numerical model was based on a smoothed particle hydrodynamics method. Gel in a model was represented as a solid-liquid system and liquid evaporation was modelled due to capillary forces and heat transfer. Comparison of experimental data and numerical results demonstrated that model can adequately represent evaporation process in agarose gel.

Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche

PubMed Central

2010-01-01

Background Recent experimental work has uncovered some of the genetic components required to maintain the Arabidopsis thaliana root stem cell niche (SCN) and its structure. Two main pathways are involved. One pathway depends on the genes SHORTROOT and SCARECROW and the other depends on the PLETHORA genes, which have been proposed to constitute the auxin readouts. Recent evidence suggests that a regulatory circuit, composed of WOX5 and CLE40, also contributes to the SCN maintenance. Yet, we still do not understand how the niche is dynamically maintained and patterned or if the uncovered molecular components are sufficient to recover the observed gene expression configurations that characterize the cell types within the root SCN. Mathematical and computational tools have proven useful in understanding the dynamics of cell differentiation. Hence, to further explore root SCN patterning, we integrated available experimental data into dynamic Gene Regulatory Network (GRN) models and addressed if these are sufficient to attain observed gene expression configurations in the root SCN in a robust and autonomous manner. Results We found that an SCN GRN model based only on experimental data did not reproduce the configurations observed within the root SCN. We developed several alternative GRN models that recover these expected stable gene configurations. Such models incorporate a few additional components and interactions in addition to those that have been uncovered. The recovered configurations are stable to perturbations, and the models are able to recover the observed gene expression profiles of almost all the mutants described so far. However, the robustness of the postulated GRNs is not as high as that of other previously studied networks. Conclusions These models are the first published approximations for a dynamic mechanism of the A. thaliana root SCN cellular pattering. Our model is useful to formally show that the data now available are not sufficient to fully reproduce root SCN organization and genetic profiles. We then highlight some experimental holes that remain to be studied and postulate some novel gene interactions. Finally, we suggest the existence of a generic dynamical motif that can be involved in both plant and animal SCN maintenance. PMID:20920363

Thin liquid film in polymer tubing : dynamics and dewetting in partial wetting condition

NASA Astrophysics Data System (ADS)

Hayoun, Pascaline; Letailleur, Alban; Teisseire, Jérémie; Verneuil, Emilie; Lequeux, François; Barthel, Etienne

2015-11-01

Polymers such as PVC and Silicone are low cost materials widely used in industry to produce tubing for fluid transport. Most of these applications involve repeated, intermittent flow of liquids which can lead to unwanted contamination. This study aims at better understanding contamination mechanisms during intermittent flow in polymer tubing, and at elucidating the relation between flow, wetting and contamination. We experimentally and theoretically investigate, flow regimes as well as dewetting process at the triple line induced by gravity flow of a vertical liquid slug in a cylindrical geometry. Our results for Newtonian fluids evidence a succession of thick film formation, hydraulic jump creation in the thickness profile, oscillatory regime and destabilization leading to substrate contamination. In order to understand theoretically the flow, one crucial quantity to assess is the film thickness in the inside of the tube. Based on an absorption measurement method, we provide explanations for behaviors and flow regimes observed experimentally.

A mathematical basis for plant patterning derived from physico-chemical phenomena.

PubMed

Beleyur, Thejasvi; Abdul Kareem, Valiya Kadavu; Shaji, Anil; Prasad, Kalika

2013-04-01

The position of leaves and flowers along the stem axis generates a specific pattern, known as phyllotaxis. A growing body of evidence emerging from recent computational modeling and experimental studies suggests that regulators controlling phyllotaxis are chemical, e.g. the plant growth hormone auxin and its dynamic accumulation pattern by polar auxin transport, and physical, e.g. mechanical properties of the cell. Here we present comprehensive views on how chemical and physical properties of cells regulate the pattern of leaf initiation. We further compare different computational modeling studies to understand their scope in reproducing the observed patterns. Despite a plethora of experimental studies on phyllotaxis, understanding of molecular mechanisms of pattern initiation in plants remains fragmentary. Live imaging of growth dynamics and physicochemical properties at the shoot apex of mutants displaying stable changes from one pattern to another should provide mechanistic insights into organ initiation patterns. Copyright © 2013 WILEY Periodicals, Inc.

Towards the Physics of Calcium Signalling in Plants

PubMed Central

Vaz Martins, Teresa; Evans, Matthew J.; Woolfenden, Hugh C.; Morris, Richard J.

2013-01-01

Calcium is an abundant element with a wide variety of important roles within cells. Calcium ions are inter- and intra-cellular messengers that are involved in numerous signalling pathways. Fluctuating compartment-specific calcium ion concentrations can lead to localised and even plant-wide oscillations that can regulate downstream events. Understanding the mechanisms that give rise to these complex patterns that vary both in space and time can be challenging, even in cases for which individual components have been identified. Taking a systems biology approach, mathematical and computational techniques can be employed to produce models that recapitulate experimental observations and capture our current understanding of the system. Useful models make novel predictions that can be investigated and falsified experimentally. This review brings together recent work on the modelling of calcium signalling in plants, from the scale of ion channels through to plant-wide responses to external stimuli. Some in silico results that have informed later experiments are highlighted. PMID:27137393

Simulations and experiments on gas adsorption in novel microporous polymers

NASA Astrophysics Data System (ADS)

Larsen, Gregory Steven

Microporous materials represent a fascinating class of materials with a broad range of applications. The work presented here focuses on the use of a novel class of microporous material known as polymers of intrinsic micrioporosity, or PIMs, for use in gas separation and storage technologies. The aim of this research is to develop a detailed understanding of the relationship between the monomeric structure and the adsorptive performance of PIMs. First, a generalizable structure generation technique was developed such that simulation samples of PIM-1 recreated experimental densities, scattering, surface areas, pore size distributions, and adsorption isotherms. After validation, the simulations were applied as virtual experiments on several new PIMs with the intent to screen their capabilities as adsorbent materials and elucidate design principles for linear PIMs. The simulations are useful in understanding the unique properties such as pore size distribution and scattering observed experimentally.

Mathematical Models of Continuous Flow Electrophoresis

NASA Technical Reports Server (NTRS)

Saville, D. A.; Snyder, R. S.

1985-01-01

Development of high resolution continuous flow electrophoresis devices ultimately requires comprehensive understanding of the ways various phenomena and processes facilitate or hinder separation. A comprehensive model of the actual three dimensional flow, temperature and electric fields was developed to provide guidance in the design of electrophoresis chambers for specific tasks and means of interpreting test data on a given chamber. Part of the process of model development includes experimental and theoretical studies of hydrodynamic stability. This is necessary to understand the origin of mixing flows observed with wide gap gravitational effects. To insure that the model accurately reflects the flow field and particle motion requires extensive experimental work. Another part of the investigation is concerned with the behavior of concentrated sample suspensions with regard to sample stream stability particle-particle interactions which might affect separation in an electric field, especially at high field strengths. Mathematical models will be developed and tested to establish the roles of the various interactions.

Behavioral Assessment of Hearing in 2 to 4 Year-old Children: A Two-interval, Observer-based Procedure Using Conditioned Play-based Responses.

PubMed

Bonino, Angela Yarnell; Leibold, Lori J

2017-01-23

Collecting reliable behavioral data from toddlers and preschoolers is challenging. As a result, there are significant gaps in our understanding of human auditory development for these age groups. This paper describes an observer-based procedure for measuring hearing sensitivity with a two-interval, two-alternative forced-choice paradigm. Young children are trained to perform a play-based, motor response (e.g., putting a block in a bucket) whenever they hear a target signal. An experimenter observes the child's behavior and makes a judgment about whether the signal was presented during the first or second observation interval; the experimenter is blinded to the true signal interval, so this judgment is based solely on the child's behavior. These procedures were used to test 2 to 4 year-olds (n = 33) with no known hearing problems. The signal was a 1,000 Hz warble tone presented in quiet, and the signal level was adjusted to estimate a threshold corresponding to 71%-correct detection. A valid threshold was obtained for 82% of children. These results indicate that the two-interval procedure is both feasible and reliable for use with toddlers and preschoolers. The two-interval, observer-based procedure described in this paper is a powerful tool for evaluating hearing in young children because it guards against response bias on the part of the experimenter.

Climate Variability and Its Impact on Forest Hydrology on South Carolina Coastal Plain, USA

Treesearch

Zhaohua Dai; Devendra Amatya; Ge Sun; Carl Trettin; Changsheng Li; Harbin Li

2011-01-01

Understanding the changes in hydrology of coastal forested wetlands induced by climate change is fundamental for developing strategies to sustain their functions and services. This study examined 60 years of climatic observations and 30 years of hydrological data, collected at the Santee Experimental Forest (SEF) in coastal South Carolina. We also applied a physically-...

Five hydrologic studies conducted by or in cooperation with the Center for Forested Wetlands Research

Treesearch

Devendra M. Amatya; Carl C. Trettin; R. Wayne Skaggs; T.J. Callahan; Ge Sun; J.E. Nettles; J.E. Parsons; M. Miwa

2005-01-01

The U.S. Department of Agriculture Forest Service Center for Forested Wetlands Research has conducted or cooperated in studies designed to improve understanding of fundamental hydrologic and biogeochemical processes that link aquatic and terrestrial ecosystems. Five of these studies are discussed here. The first is based on observations made on long-term experimental...

The Use of Interactive Computer Animations Based on POE as a Presentation Tool in Primary Science Teaching

ERIC Educational Resources Information Center

Akpinar, Ercan

2014-01-01

This study investigates the effects of using interactive computer animations based on predict-observe-explain (POE) as a presentation tool on primary school students' understanding of the static electricity concepts. A quasi-experimental pre-test/post-test control group design was utilized in this study. The experiment group consisted of 30…

The lost research of early northeastern spruce-fir experimental forests: a tale of lost opportunities

Treesearch

Kate Berven; Laura Kenefic; Aaron Weiskittel; Mark Twery; Jeremy. Wilson

2013-01-01

Long-term research is critical to our understanding of forest dynamics. Observations made over decades or centuries provide valuable insight into the effects of natural and anthropogenic disturbances, and allow scientists and forest managers to determine which management regimes succeed and which ones fail in terms of desired objectives. Unfortunately, many long-term...

Fluid-Structure Interaction in Composite Structures

DTIC Science & Technology

2014-03-01

polymer composite structures. Some previous experimental observations were confirmed using the results from the computer simulations , which also...computer simulations , which also enhanced understanding the effect of FSI on dynamic responses of composite structures. vi THIS PAGE INTENTIONALLY...forces) are applied. A great amount of research has been made using the FEM to study and simulate the cases when the structures are surrounded by

Developmental Emergence of Self-Referential and Inhibition Mechanisms of Body Movements Underling Felicitous Behaviors

ERIC Educational Resources Information Center

Watanabe, Hama; Homae, Fumitaka; Taga, Gentaro

2011-01-01

In young infants, activation or inhibition of body movements on perception of environmental events is important to enable them to act on the world or understand the world. To reveal the development of this ability, we observed movement patterns in all four limbs under the two experimental conditions. Infants assigned to the interaction condition…

Investigation of the fluid flow dynamic parameters for Newtonian and non-Newtonian materials: an approach to understanding the fluid flow-like structures within fault zones

NASA Astrophysics Data System (ADS)

Tanaka, H.; Shiomi, Y.; Ma, K.-F.

2017-11-01

To understand the fault zone fluid flow-like structure, namely the ductile deformation structure, often observed in the geological field (e.g., Ramsay and Huber The techniques of modern structure geology, vol. 1: strain analysis, Academia Press, London, 1983; Hobbs and Ord Structure geology: the mechanics of deforming metamorphic rocks, Vol. I: principles, Elsevier, Amsterdam, 2015), we applied a theoretical approach to estimate the rate of deformation, the shear stress and the time to form a streak-line pattern in the boundary layer of viscous fluids. We model the dynamics of streak lines in laminar boundary layers for Newtonian and pseudoplastic fluids and compare the results to those obtained via laboratory experiments. The structure of deformed streak lines obtained using our model is consistent with experimental observations, indicating that our model is appropriate for understanding the shear rate, flow time and shear stress based on the profile of deformed streak lines in the boundary layer in Newtonian and pseudoplastic viscous materials. This study improves our understanding of the transportation processes in fluids and of the transformation processes in fluid-like materials. Further application of this model could facilitate understanding the shear stress and time history of the fluid flow-like structure of fault zones observed in the field.[Figure not available: see fulltext.

Evaporation residue cross-section measurements for 48Ti-induced reactions

NASA Astrophysics Data System (ADS)

Sharma, Priya; Behera, B. R.; Mahajan, Ruchi; Thakur, Meenu; Kaur, Gurpreet; Kapoor, Kushal; Rani, Kavita; Madhavan, N.; Nath, S.; Gehlot, J.; Dubey, R.; Mazumdar, I.; Patel, S. M.; Dhibar, M.; Hosamani, M. M.; Khushboo, Kumar, Neeraj; Shamlath, A.; Mohanto, G.; Pal, Santanu

2017-09-01

Background: A significant research effort is currently aimed at understanding the synthesis of heavy elements. For this purpose, heavy ion induced fusion reactions are used and various experimental observations have indicated the influence of shell and deformation effects in the compound nucleus (CN) formation. There is a need to understand these two effects. Purpose: To investigate the effect of proton shell closure and deformation through the comparison of evaporation residue (ER) cross sections for the systems involving heavy compound nuclei around the ZCN=82 region. Methods: A systematic study of ER cross-section measurements was carried out for the 48Ti+Nd,150142 , 144Sm systems in the energy range of 140 -205 MeV . The measurement has been performed using the gas-filled mode of the hybrid recoil mass analyzer present at the Inter University Accelerator Centre (IUAC), New Delhi. Theoretical calculations based on a statistical model were carried out incorporating an adjustable barrier scaling factor to fit the experimental ER cross section. Coupled-channel calculations were also performed using the ccfull code to obtain the spin distribution of the CN, which was used as an input in the calculations. Results: Experimental ER cross sections for 48Ti+Nd,150142 were found to be considerably smaller than the statistical model predictions whereas experimental and statistical model predictions for 48Ti+144Sm were of comparable magnitudes. Conclusion: Though comparison of experimental ER cross sections with statistical model predictions indicate considerable non-compound-nuclear processes for 48Ti+Nd,150142 reactions, no such evidence is found for the 48Ti+144Sm system. Further investigations are required to understand the difference in fusion probabilities of 48Ti+142Nd and 48Ti+144Sm systems.

An analysis of induced pressure fields in electroosmotic flows through microchannels.

PubMed

Zhang, Yonghao; Gu, Xiao-Jun; Barber, Robert W; Emerson, David R

2004-07-15

Induced pressure gradients are found to cause band-broadening effects which are important to the performance of microfluidic devices, such as capillary electrophoresis and capillary chromatography. An improved understanding of the underlying mechanisms causing an induced pressure gradient in electroosmotic flows is presented. The analysis shows that the induced pressure distribution is the key to understanding the experimentally observed phenomena of leakage flows. A novel way of determining the static pressures at the inlet and outlet of microchannels is also presented that takes account of the pressure losses due to flow contraction and expansion. These commonly neglected pressure losses at the channel entrance and outlet are shown to be important in accurately describing the flow. The important parameters that define the effect of induced pressure on the flows are discussed, which may facilitate the design of improved microfluidic devices. The present model clearly identifies the mechanism behind the experimentally observed leakage flows, which is further confirmed by numerical simulations. Not only can the leakage flow occur from the electric-field-free side channel to the main channel, but also the fluid in the main channel can be attracted into the side channel by the induced pressure gradient. Copyright 2004 Elsevier Inc.

Cross-study projections of genomic biomarkers: an evaluation in cancer genomics.

PubMed

Lucas, Joseph E; Carvalho, Carlos M; Chen, Julia Ling-Yu; Chi, Jen-Tsan; West, Mike

2009-01-01

Human disease studies using DNA microarrays in both clinical/observational and experimental/controlled studies are having increasing impact on our understanding of the complexity of human diseases. A fundamental concept is the use of gene expression as a "common currency" that links the results of in vitro controlled experiments to in vivo observational human studies. Many studies--in cancer and other diseases--have shown promise in using in vitro cell manipulations to improve understanding of in vivo biology, but experiments often simply fail to reflect the enormous phenotypic variation seen in human diseases. We address this with a framework and methods to dissect, enhance and extend the in vivo utility of in vitro derived gene expression signatures. From an experimentally defined gene expression signature we use statistical factor analysis to generate multiple quantitative factors in human cancer gene expression data. These factors retain their relationship to the original, one-dimensional in vitro signature but better describe the diversity of in vivo biology. In a breast cancer analysis, we show that factors can reflect fundamentally different biological processes linked to molecular and clinical features of human cancers, and that in combination they can improve prediction of clinical outcomes.

The mirror neuron system and treatment of stroke.

PubMed

Small, Steven L; Buccino, Giovanni; Solodkin, Ana

2012-04-01

Mirror neurons discharge during the execution of ecological goal-directed manual and oral actions, as well as during the observation of the same actions done by other individuals. These neurons were first identified in the ventral premotor cortex (PMv; area F5) and later on in the inferior parietal lobule (areas PF and PFG) of monkey brain, constituting a "mirror neuron" system. Several pieces of experimental data suggest that a mirror neuron system devoted to hand, mouth, and foot actions might also be present in humans. In the present paper, we review the experimental evidence on the role of the mirror neuron system in action understanding and imitation, both in hand motor function and speech. Based on the features of the mirror neuron system and its role in action understanding and imitation, we discuss the use of action observation and imitation as an approach for systematic training in the rehabilitation of patients with motor impairment of the upper limb and aphasia following stroke. We present the results of some preliminary studies to test this concept, and a discussion of network models as a measure of neurobiological change. Copyright © 2010 Wiley Periodicals, Inc.

Susceptibility to Yersinia pestis experimental infection in wild Rattus rattus, reservoir of plague in Madagascar.

PubMed

Tollenaere, C; Rahalison, L; Ranjalahy, M; Duplantier, J-M; Rahelinirina, S; Telfer, S; Brouat, C

2010-06-01

In Madagascar, the black rat, Rattus rattus, is the main reservoir of plague (Yersinia pestis infection), a disease still responsible for hundreds of cases each year in this country. This study used experimental plague challenge to assess susceptibility in wild-caught rats to better understand how R. rattus can act as a plague reservoir. An important difference in plague resistance between rat populations from the plague focus (central highlands) and those from the plague-free zone (low altitude area) was confirmed to be a widespread phenomenon. In rats from the plague focus, we observed that sex influenced plague susceptibility, with males slightly more resistant than females. Other individual factors investigated (weight and habitat of sampling) did not affect plague resistance. When infected at high bacterial dose (more than 10⁵ bacteria injected), rats from the plague focus died mainly within 3-5 days and produced specific antibodies, whereas after low-dose infection (< 5,000 bacteria), delayed mortality was observed and surviving seronegative rats were not uncommon. These results concerning plague resistance level and the course of infection in the black rat would contribute to a better understanding of plague circulation in Madagascar.

Breaking the rules: do infants have a true understanding of false belief?

PubMed

Yott, Jessica; Poulin-Dubois, Diane

2012-03-01

It has been suggested that infants' performance on the false belief task can be explained by the use of behavioural rules. To test this hypothesis, 18-month-old infants were trained to learn the new rule that an object that disappeared in location A could be found in location B. Infants were then administered a false belief task based on the violation of expectation (VOE) paradigm, an intention understanding task, and a modified detour-reaching task. Results revealed that infants looked significantly longer at the display when the experimenter looked for the toy in the full box (box with the toy) compared to infants who observed the experimenter search in the empty box (box without the toy). Results also revealed significant correlations between infants' looking time at the display and their scores on the intention task and on the detour-reaching task. Taken together, these findings suggest that infants possess an implicit understanding of false belief. In addition, they challenge the view that success on the implicit false belief task does not require executive functioning abilities. © 2011 The British Psychological Society.

Microscopic Structure and Solubility Predictions of Multifunctional Solids in Supercritical Carbon Dioxide: A Molecular Simulation Study.

PubMed

Noroozi, Javad; Paluch, Andrew S

2017-02-23

Molecular dynamics simulations were employed to both estimate the solubility of nonelectrolyte solids, such as acetanilide, acetaminophen, phenacetin, methylparaben, and lidocaine, in supercritical carbon dioxide and understand the underlying molecular-level driving forces. The solubility calculations involve the estimation of the solute's limiting activity coefficient, which may be computed using conventional staged free-energy calculations. For the case of lidocaine, wherein the infinite dilution approximation is not appropriate, we demonstrate how the activity coefficient at finite concentrations may be estimated without additional effort using the dilute solution approximation and how this may be used to further understand the solvation process. Combining with experimental pure-solid properties, namely, the normal melting point and enthalpy of fusion, solubilities were estimated. The results are in good quantitative agreement with available experimental data, suggesting that molecular simulations may be a powerful tool for understanding supercritical processes and the design of carbon dioxide-philic molecular systems. Structural analyses were performed to shed light on the microscopic details of the solvation of different functional groups by carbon dioxide and the observed solubility trends.

Experimental deformation of (Mg,Fe)O ferropericlase in a resistive-heated DAC at conditions of the Earth's lower mantle

NASA Astrophysics Data System (ADS)

Immoor, J.; Marquardt, H.; Miyagi, L. M.; Lin, F.; Speziale, S.; Merkel, S.; Liermann, H. P.

2017-12-01

Seismic anisotropy in Earth's lowermost mantle, resulting from crystallographic preferred orientation (CPO) of elastically anisotropic minerals, is the most promising observable to map mantle flow patterns. The shear wave anisotropy observed in the lowermost mantle might be caused by CPO of (Mg,Fe)O ferropericlase that is characterized by large elastic anisotropy in the deep lower mantle. However, our understanding of the slip system activities of ferropericlase at conditions of the lowermost mantle is still incomplete. Here, we present results of an experimental study designed to determine slip system activities in (Mg,Fe)O at P-T conditions of the lower mantle. In-situ deformation experiments on powders of (Mg0.8Fe0.2)O were conducted in a graphite heated diamond anvil cell (DAC) up to a temperature of 1400K. Synchrotron x-ray diffraction data were fit with the program MAUD (Materials Analysing Using Diffraction) to extract textures and lattice strains. The experimental results were modelled using the Elasto-Viscoplastic Self Consistent (EVPSC) code. Our data indicate a change in slip system activities from dominant {110} to increasing {100} slip at temperatures above 1150 K and pressures corresponding to the mid-lower mantle. Our findings indicate an effect of both pressure and temperature on the plasticity of (Mg,Fe)O and, hence, pave the way to a better understanding of with a potential change of dominant slip system between 40-60 GPa in MgO predicted from numerical models (Amodeo et al., 2012). We use the results to model the possible contribution of ferropericlase CPO to observed seismic anisotropy in the D'' layer in the lowermost mantle. Amodeo et al. (2012) Phil Mag, 92, 1523-1541

Understanding of impurity poloidal distribution in the edge pedestal by modelling

NASA Astrophysics Data System (ADS)

Rozhansky, V.; Kaveeva, E.; Molchanov, P.; Veselova, I.; Voskoboynikov, S.; Coster, D.; Fable, E.; Puetterich, T.; Viezzer, E.; Kukushkin, A. S.; Kirk, A.; the ASDEX Upgrade Team

2015-07-01

Simulation of an H-mode ASDEX Upgrade shot with boron impurity was done with the B2SOLPS5.2 transport code. Simulation results were compared with the unique experimental data available for the chosen shot: radial density, electron and ion temperature profiles in the equatorial midplanes, radial electric field profile, radial profiles of the parallel velocity of impurities at the low-field side (LFS) and high-field side (HFS), radial density profiles of impurity ions at LHS and HFS. Simulation results reproduce all available experimental data simultaneously. In particular strong poloidal HFS-LFS asymmetry of B5+ ions was predicted in accordance with the experiment. The simulated HFS B5+ density inside the edge transport barrier is twice larger than that at LFS. This is consistent with the experimental observations where even larger impurity density asymmetry was observed. A similar effect was predicted in the simulation done for the MAST H-mode. Here the HFS density of He2+ is predicted to be 4 times larger than that at LHS. Such a large predicted asymmetry is connected with a larger ratio of HFS and LFS magnetic fields which is typical for spherical tokamaks. The HFS/LFS asymmetry was not measured in the experiment, however modelling qualitatively reproduces the observed change of sign of He+parallel velocity to the counter-current direction at LFS. The understanding of the asymmetry is based on neoclassical effects in plasma with strong gradients. It is demonstrated that simulation results obtained with account of sources of ionization, realistic geometry and turbulent transport are consistent with the simplified analytical approach. Difference from the standard neoclassical theory is emphasized.

Large Amplitude Whistler Waves and Electron Acceleration in the Earth's Radiation Belts: A Review of STEREO and Wind Observations

NASA Technical Reports Server (NTRS)

Cattell, Cynthia; Breneman, A.; Goetz, K.; Kellogg, P.; Kersten, K.; Wygant, J.; Wilson, L. B., III; Looper, Mark D.; Blake, J. Bernard; Roth, I.

2012-01-01

One of the critical problems for understanding the dynamics of Earth's radiation belts is determining the physical processes that energize and scatter relativistic electrons. We review measurements from the Wind/Waves and STEREO S/Waves waveform capture instruments of large amplitude whistler-mode waves. These observations have provided strong evidence that large amplitude (100s mV/m) whistler-mode waves are common during magnetically active periods. The large amplitude whistlers have characteristics that are different from typical chorus. They are usually nondispersive and obliquely propagating, with a large longitudinal electric field and significant parallel electric field. We will also review comparisons of STEREO and Wind wave observations with SAMPEX observations of electron microbursts. Simulations show that the waves can result in energization by many MeV and/or scattering by large angles during a single wave packet encounter due to coherent, nonlinear processes including trapping. The experimental observations combined with simulations suggest that quasilinear theoretical models of electron energization and scattering via small-amplitude waves, with timescales of hours to days, may be inadequate for understanding radiation belt dynamics.

Integrating atomistic molecular dynamics simulations, experiments, and network analysis to study protein dynamics: strength in unity.

PubMed

Papaleo, Elena

2015-01-01

In the last years, we have been observing remarkable improvements in the field of protein dynamics. Indeed, we can now study protein dynamics in atomistic details over several timescales with a rich portfolio of experimental and computational techniques. On one side, this provides us with the possibility to validate simulation methods and physical models against a broad range of experimental observables. On the other side, it also allows a complementary and comprehensive view on protein structure and dynamics. What is needed now is a better understanding of the link between the dynamic properties that we observe and the functional properties of these important cellular machines. To make progresses in this direction, we need to improve the physical models used to describe proteins and solvent in molecular dynamics, as well as to strengthen the integration of experiments and simulations to overcome their own limitations. Moreover, now that we have the means to study protein dynamics in great details, we need new tools to understand the information embedded in the protein ensembles and in their dynamic signature. With this aim in mind, we should enrich the current tools for analysis of biomolecular simulations with attention to the effects that can be propagated over long distances and are often associated to important biological functions. In this context, approaches inspired by network analysis can make an important contribution to the analysis of molecular dynamics simulations.

An Overview of CC Coherent Pion Production

NASA Astrophysics Data System (ADS)

Williams, Zachary

2017-01-01

Neutrino cross-sections are a critical component to any neutrino measurement. With the modern neutrino experiments aiming to measure precision parameters, such as those in long-baseline oscillation experiments, the need for a detailed understanding of neutrino interactions has become even more important. Within this landscape remains a number of experimental challenges in the regime of low energy neutrino cross-sections. This talk will give an overview of recent publications on Charged Current-Coherent Pion Production (CC-Coh Pion) results from a number of experimental collaborations. Specifically, the lack of observation from the SciBooNE and T2K collaborations to observe CC-Coh Pion below one GeV in contrast to the observation of this signature at higher energies by other experiments. The work presented here is a part of the beginning steps to a reanalysis of the SciBooNE data using a modern neutrino generator in order to better understand the previous results. There will be included details of a liquid Argon purification system that is being built at UTA, and of plans for a ``Baby Time Projection Chamber (TPC)'' which will also be built at UTA, and the instrumentation and detector methods used in their construction. The closing is a look to the future for a new analysis at low neutrino energies utilizing Liquid Argon Time Projection Chambers (LArTPCs) based at Fermilab.

Self-Organized Patterns in Gas-Discharge: Particle-Like Behaviour and Dissipative Solitons

NASA Astrophysics Data System (ADS)

Purwins, H.-G.

2008-03-01

The understanding of self-organise patterns in spatially extended nonlinear dissipative systems (SOPs) is one of the most challenging subjects in modern natural sciences. In the last 20 years it turned out that research in the field of low temperature gas-discharge can help to obtain insight into important aspect of SOPs. At the same time, due to the practical relevance of plasma systems one might expect interesting applications. In the present paper the focus is on self-organised filamentary patterns in planar dc and ac systems with high ohmic and dielectric barrier, respectively. - In the discharge plane of these systems filaments show up as spots which are also referred to as dissipative solitons (DSs). In many respect experimentally detected DSs exhibit particle-like behaviour. Among other things, isolated stationary or travelling DSs, stationary, travelling or rotating "molecules" and various kinds of many-body systems have been observed. Also scattering, generation and annihilation of DSs are frequent phenomena. - At least some of these patterns can be described quantitatively in terms of a drift diffusion model. It is also demonstrated that a simple reaction diffusion model allows for an intuitive understanding of many of the observed phenomena. At the same time this model is the basis for a theoretical foundation of the particle picture and the experimentally observed universal behaviour of SOPs. - Finally some hypothetical applications are discussed.

Diffraction-Based Density Restraints for Membrane and Membrane-Peptide Molecular Dynamics Simulations

PubMed Central

Benz, Ryan W.; Nanda, Hirsh; Castro-Román, Francisco; White, Stephen H.; Tobias, Douglas J.

2006-01-01

We have recently shown that current molecular dynamics (MD) atomic force fields are not yet able to produce lipid bilayer structures that agree with experimentally-determined structures within experimental errors. Because of the many advantages offered by experimentally validated simulations, we have developed a novel restraint method for membrane MD simulations that uses experimental diffraction data. The restraints, introduced into the MD force field, act upon specified groups of atoms to restrain their mean positions and widths to values determined experimentally. The method was first tested using a simple liquid argon system, and then applied to a neat dioleoylphosphatidylcholine (DOPC) bilayer at 66% relative humidity and to the same bilayer containing the peptide melittin. Application of experiment-based restraints to the transbilayer double-bond and water distributions of neat DOPC bilayers led to distributions that agreed with the experimental values. Based upon the experimental structure, the restraints improved the simulated structure in some regions while introducing larger differences in others, as might be expected from imperfect force fields. For the DOPC-melittin system, the experimental transbilayer distribution of melittin was used as a restraint. The addition of the peptide caused perturbations of the simulated bilayer structure, but which were larger than observed experimentally. The melittin distribution of the simulation could be fit accurately to a Gaussian with parameters close to the observed ones, indicating that the restraints can be used to produce an ensemble of membrane-bound peptide conformations that are consistent with experiments. Such ensembles pave the way for understanding peptide-bilayer interactions at the atomic level. PMID:16950837

Neutron Scattering from Polymers: Five Decades of Developing Possibilities.

PubMed

Higgins, J S

2016-06-07

The first three decades of my research career closely map the development of neutron scattering techniques for the study of molecular behavior. At the same time, the theoretical understanding of organization and motion of polymer molecules, especially in the bulk state, was developing rapidly and providing many predictions crying out for experimental verification. Neutron scattering is an ideal technique for providing the necessary evidence. This autobiographical essay describes the applications by my research group and other collaborators of increasingly sophisticated neutron scattering techniques to observe and understand molecular behavior in polymeric materials. It has been a stimulating and rewarding journey.

New particle formation in China: Current knowledge and further directions.

PubMed

Wang, Zhibin; Wu, Zhijun; Yue, Dingli; Shang, Dongjie; Guo, Song; Sun, Junying; Ding, Aijun; Wang, Lin; Jiang, Jingkun; Guo, Hai; Gao, Jian; Cheung, Hing Cho; Morawska, Lidia; Keywood, Melita; Hu, Min

2017-01-15

New particle formation (NPF) studies have been conducted in China since 2004. Formation of new atmospheric aerosol particles has been observed to take place in diverse environments, even under the circumstances of high pre-existing particle loading, challenging the traditional and present understanding of the physicochemical nucleation mechanisms, which have been proposed based on the investigations in clean environments and under laboratory experimental conditions. This paper summarizes the present status and gaps in understanding NPF in China and discusses the main directions opening for future research. Copyright © 2016 Elsevier B.V. All rights reserved.

Assessment of Cable Aging Equipment, Status of Acquired Materials, and Experimental Matrix at the Pacific Northwest National Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fifield, Leonard S.; Westman, Matthew P.; Zwoster, Andy

2015-03-30

The need for increased understanding of the aging and degradation behavior for polymer components of nuclear power plant electrical cables is described in this report. The highest priority materials for study and the resources available at PNNL for these studies are also described. The anticipated outcomes of the PNNL work described are : improved understanding of appropriate accelerated aging conditions, improved knowledge of correlation between observable aging indicators and cable condition in support of advanced non-destructive evaluation methods, and practical knowledge of condition-based cable lifetime prediction.

Learning probability distributions from smooth observables and the maximum entropy principle: some remarks

NASA Astrophysics Data System (ADS)

Obuchi, Tomoyuki; Monasson, Rémi

2015-09-01

The maximum entropy principle (MEP) is a very useful working hypothesis in a wide variety of inference problems, ranging from biological to engineering tasks. To better understand the reasons of the success of MEP, we propose a statistical-mechanical formulation to treat the space of probability distributions constrained by the measures of (experimental) observables. In this paper we first review the results of a detailed analysis of the simplest case of randomly chosen observables. In addition, we investigate by numerical and analytical means the case of smooth observables, which is of practical relevance. Our preliminary results are presented and discussed with respect to the efficiency of the MEP.

Beyond human intentions and emotions

PubMed Central

Juan, Elsa; Frum, Chris; Bianchi-Demicheli, Francesco; Wang, Yi-Wen; Lewis, James W.; Cacioppo, Stephanie

2013-01-01

Although significant advances have been made in our understanding of the neural basis of action observation and intention understanding in the last few decades by studies demonstrating the involvement of a specific brain network (action observation network; AON), these have been largely based on experimental studies in which people have been considered as strictly isolated entities. However, we, as social species, spend much more of our time performing actions interacting with others. Research shows that a person's position along the continuum of perceived social isolation/bonding to others is associated with a variety of physical and mental health effects. Thus, there is a crucial need to better understand the neural basis of intention understanding performed in interpersonal and emotional contexts. To address this issue, we performed a meta-analysis using of functional magnetic resonance imaging (fMRI) studies over the past decade that examined brain and cortical network processing associated with understanding the intention of others actions vs. those associated with passionate love for others. Both overlapping and distinct cortical and subcortical regions were identified for intention and love, respectively. These findings provide scientists and clinicians with a set of brain regions that can be targeted for future neuroscientific studies on intention understanding, and help develop neurocognitive models of pair-bonding. PMID:23543838

What Drives Metal-Surface Step Bunching in Graphene Chemical Vapor Deposition?

NASA Astrophysics Data System (ADS)

Yi, Ding; Luo, Da; Wang, Zhu-Jun; Dong, Jichen; Zhang, Xu; Willinger, Marc-Georg; Ruoff, Rodney S.; Ding, Feng

2018-06-01

Compressive strain relaxation of a chemical vapor deposition (CVD) grown graphene overlayer has been considered to be the main driving force behind metal surface step bunching (SB) in CVD graphene growth. Here, by combining theoretical studies with experimental observations, we prove that the SB can occur even in the absence of a compressive strain, is enabled by the rapid diffusion of metal adatoms beneath the graphene and is driven by the release of the bending energy of the graphene overlayer in the vicinity of steps. Based on this new understanding, we explain a number of experimental observations such as the temperature dependence of SB, and how SB depends on the thickness of the graphene film. This study also shows that SB is a general phenomenon that can occur in all substrates covered by films of two-dimensional (2D) materials.

Mirror neurons and the understanding of behavioural symptoms in psychiatric disorders.

PubMed

Buccino, Giovanni; Amore, Mario

2008-05-01

Recent findings show that we can understand other people's actions, intentions and emotions through a mirror mechanism as if we performed the same actions and felt the same intentions or emotions (embodied simulation). The present paper reviews experimental evidence that this mechanism may be broken in some psychiatric disorders. A mirror neuron system has been described in both monkeys and humans that allows one to map an observed action on a correspondent motor representation in the observer's brain. This mechanism has been involved in many higher motor functions ranging from action understanding to imitation and intention coding. A mirror mechanism has also been invoked in empathy, through an embodied simulation. A dysfunction of the mirror neuron system may be at the root of the inability to empathize in patients with autism and may play a role in some negative and positive symptoms found in patients with schizophrenia. This opens up new perspectives in the interpretation of psychotic symptoms and possibly in developing therapeutic strategies.

Microbial oceanography and the Hawaii Ocean Time-series programme.

PubMed

Karl, David M; Church, Matthew J

2014-10-01

The Hawaii Ocean Time-series (HOT) programme has been tracking microbial and biogeochemical processes in the North Pacific Subtropical Gyre since October 1988. The near-monthly time series observations have revealed previously undocumented phenomena within a temporally dynamic ecosystem that is vulnerable to climate change. Novel microorganisms, genes and unexpected metabolic pathways have been discovered and are being integrated into our evolving ecological paradigms. Continued research, including higher-frequency observations and at-sea experimentation, will help to provide a comprehensive scientific understanding of microbial processes in the largest biome on Earth.

Hadron scattering, resonances, and QCD

NASA Astrophysics Data System (ADS)

Briceño, R. A.

2016-11-01

The non-perturbative nature of quantum chromodynamics (QCD) has historically left a gap in our understanding of the connection between the fundamental theory of the strong interactions and the rich structure of experimentally observed phenomena. For the simplest properties of stable hadrons, this is now circumvented with the use of lattice QCD (LQCD). In this talk I discuss a path towards a rigorous determination of few-hadron observables from LQCD. I illustrate the power of the methodology by presenting recently determined scattering amplitudes in the light-meson sector and their resonance content.

Impact-induced solidlike behavior and elasticity in concentrated colloidal suspensions

NASA Astrophysics Data System (ADS)

Chu, Baojin; Salem, David R.

2017-10-01

Modified drop weight impact tests were performed on Si O2 -ethylene glycol concentrated suspensions. Counterintuitive impact-induced solidlike behavior and elasticity, causing significant deceleration and rebound of the impactor, were observed. We provide evidence that the observed large deceleration force on the impactor mainly originates from the hydrodynamic force, and that the elasticity arises from the short-range repulsive force of a solvation layer on the particle surface. This study presents key experimental results to help understand the mechanisms underlying various stress-induced solidification phenomena.

Modeling of leishmaniasis infection dynamics: novel application to the design of effective therapies

PubMed Central

2012-01-01

Background The WHO considers leishmaniasis as one of the six most important tropical diseases worldwide. It is caused by parasites of the genus Leishmania that are passed on to humans and animals by the phlebotomine sandfly. Despite all of the research, there is still a lack of understanding on the metabolism of the parasite and the progression of the disease. In this study, a mathematical model of disease progression was developed based on experimental data of clinical symptoms, immunological responses, and parasite load for Leishmania amazonensis in BALB/c mice. Results Four biologically significant variables were chosen to develop a differential equation model based on the GMA power-law formalism. Parameters were determined to minimize error in the model dynamics and time series experimental data. Subsequently, the model robustness was tested and the model predictions were verified by comparing them with experimental observations made in different experimental conditions. The model obtained helps to quantify relationships between the selected variables, leads to a better understanding of disease progression, and aids in the identification of crucial points for introducing therapeutic methods. Conclusions Our model can be used to identify the biological factors that must be changed to minimize parasite load in the host body, and contributes to the design of effective therapies. PMID:22222070

Time-varying output performances of piezoelectric vibration energy harvesting under nonstationary random vibrations

NASA Astrophysics Data System (ADS)

Yoon, Heonjun; Kim, Miso; Park, Choon-Su; Youn, Byeng D.

2018-01-01

Piezoelectric vibration energy harvesting (PVEH) has received much attention as a potential solution that could ultimately realize self-powered wireless sensor networks. Since most ambient vibrations in nature are inherently random and nonstationary, the output performances of PVEH devices also randomly change with time. However, little attention has been paid to investigating the randomly time-varying electroelastic behaviors of PVEH systems both analytically and experimentally. The objective of this study is thus to make a step forward towards a deep understanding of the time-varying performances of PVEH devices under nonstationary random vibrations. Two typical cases of nonstationary random vibration signals are considered: (1) randomly-varying amplitude (amplitude modulation; AM) and (2) randomly-varying amplitude with randomly-varying instantaneous frequency (amplitude and frequency modulation; AM-FM). In both cases, this study pursues well-balanced correlations of analytical predictions and experimental observations to deduce the relationships between the time-varying output performances of the PVEH device and two primary input parameters, such as a central frequency and an external electrical resistance. We introduce three correlation metrics to quantitatively compare analytical prediction and experimental observation, including the normalized root mean square error, the correlation coefficient, and the weighted integrated factor. Analytical predictions are in an excellent agreement with experimental observations both mechanically and electrically. This study provides insightful guidelines for designing PVEH devices to reliably generate electric power under nonstationary random vibrations.

Experimental measurement of interparticle acoustic radiation force in the Rayleigh limit

NASA Astrophysics Data System (ADS)

Mohapatra, Abhishek Ray; Sepehrirahnama, Shahrokh; Lim, Kian-Meng

2018-05-01

Acoustophoresis is a form of contact-free particle manipulation in microfluidic devices. The precision of manipulation can be enhanced with better understanding of the acoustic radiation force. In this paper we present the measurements of interparticle radiation force between a pair of polystyrene beads in the Rayleigh limit. The study is conducted for three different sizes of beads and the experimental results are of the same order of magnitude when compared with theoretical predictions. However, the experimental values are larger than the theoretical values. The trend of a decrease in the magnitude of the interparticle radiation force with decreasing particle size and increasing center-to-center distance between the particles is also observed experimentally. The experiments are conducted in the specific scenario where the pair of beads are in close proximity, but not in contact with each other, and the beads are approaching the pressure nodal plane with the center-to-center line aligned perpendicular to the incident wave. This scenario minimizes the presence of the primary radiation force, allowing accurate measurement of the interparticle force. The attractive nature of the interparticle force is observed, consistent with theoretical predictions.

Impact of the front-of-pack 5-colour nutrition label (5-CNL) on the nutritional quality of purchases: an experimental study.

PubMed

Julia, Chantal; Blanchet, Olivier; Méjean, Caroline; Péneau, Sandrine; Ducrot, Pauline; Allès, Benjamin; Fezeu, Léopold K; Touvier, Mathilde; Kesse-Guyot, Emmanuelle; Singler, Eric; Hercberg, Serge

2016-09-20

Front-of-pack (FOP) nutrition labelling has received growing attention from public health authorities, as a tool to promote healthier diets in the population. Recently, the French Health law introduced the principle of implementing a FOP nutrition labelling system. A scientific proposal has put forward the 5-Colour Nutrition Label (5-CNL), a five-category colour-coded summary system supported by research suggesting that it is well perceived and understood in the population. Our objective was to investigate the impact of the 5-CNL on the nutritional quality of purchases in experimental supermarkets. Participants (n = 901) were recruited using quota sampling between September and December 2015 and evenly distributed in three experimental conditions: 1) control situation; 2) Application of the 5-CNL on all food products in three specific sections: breakfast cereals, sweet biscuits and appetizers; 3) introduction of the 5-CNL accompanied by consumer information on use and understanding of the label. Main outcome was the nutritional quality of the shopping cart in the three sections combined, measured using the United Kingdom Food Standards Agency nutrient profiling system (FSA score). Significantly higher mean nutritional quality of the purchased items per section were observed for the sweet biscuits category in the intervention combining the label + communication (overall FSA score 21.01 vs. 20.23, P = 0.02). No significant effects were observed for the general mean over the three sections combined or other food categories. The results observed on purchase may be related to the high level of recall, self-reported and objective understanding of the label that were observed in the intervention groups as they are pre-requisites for use of a label in purchasing situations. These results suggest that the 5-CNL FOP nutrition label may have a limited impact on purchases, leading to healthier food choices in some food categories such as sweet biscuits. The trial was registered on Clinicaltrials.gov under the number NCT02546505 .

Scientific thinking in elementary school: Children's social cognition and their epistemological understanding promote experimentation skills.

PubMed

Osterhaus, Christopher; Koerber, Susanne; Sodian, Beate

2017-03-01

Do social cognition and epistemological understanding promote elementary school children's experimentation skills? To investigate this question, 402 children (ages 8, 9, and 10) in 2nd, 3rd, and 4th grades were assessed for their experimentation skills, social cognition (advanced theory of mind [AToM]), epistemological understanding (understanding the nature of science), and general information-processing skills (inhibition, intelligence, and language abilities) in a whole-class testing procedure. A multiple indicators multiple causes model revealed a significant influence of social cognition (AToM) on epistemological understanding, and a McNemar test suggested that children's development of AToM is an important precursor for the emergence of an advanced, mature epistemological understanding. Children's epistemological understanding, in turn, predicted their experimentation skills. Importantly, this relation was independent of the common influences of general information processing. Significant relations between experimentation skills and inhibition, and between epistemological understanding, intelligence, and language abilities emerged, suggesting that general information processing contributes to the conceptual development that is involved in scientific thinking. The model of scientific thinking that was tested in this study (social cognition and epistemological understanding promote experimentation skills) fitted the data significantly better than 2 alternative models, which assumed nonspecific, equally strong relations between all constructs under investigation. Our results support the conclusion that social cognition plays a foundational role in the emergence of children's epistemological understanding, which in turn is closely related to the development of experimentation skills. Our findings have significant implications for the teaching of scientific thinking in elementary school and they stress the importance of children's epistemological understanding in scientific-thinking processes. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

Effect of doping of tin on optoelectronic properties of indium oxide: DFT study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tripathi, Madhvendra Nath, E-mail: ommadhav27@gmail.com

2015-06-24

Indium tin oxide is widely used transparent conductor. Experimentally observed that 6% tin doping in indium oxide is suitable for optoelectronic applications and more doping beyond this limit degrades the optoelectronic property. The stoichiometry (In{sub 32-x}Sn{sub x}O{sub 48+x/2}; x=0-6) is taken to understand the change in lattice parameter, electronic structure, and optical property of ITO. It is observed that lattice parameter increases and becomes constant after 6% tin doping that is in good agreement of the experimental observation. The electronic structure calculation shows that the high tin doping in indium oxide adversely affects the dispersive nature of the bottom ofmore » conduction band of pure indium oxide and decreases the carrier mobility. Optical calculations show that transmittance goes down upto 60% for the tin concentration more than 6%. The present paper shows that how more than 6% tin doping in indium oxide adversely affects the optoelectronic property of ITO.« less

Exploring parameter space effects on structure-property relationships of surfactants at liquid-liquid interfaces.

PubMed

Emborsky, Christopher P; Cox, Kenneth R; Chapman, Walter G

2011-08-28

The ubiquitous use of surfactants in commercial and industrial applications has led to many experimental, theoretical, and simulation based studies. These efforts seek to provide a molecular level understanding of the effects on structuring behavior and the corresponding impacts on observable properties (e.g., interfacial tension). With such physical detail, targeted system design can be improved over typical techniques of observational trends and phenomenological correlations by taking advantage of predictive system response. This research provides a systematic study of part of the broad parameter space effects on equilibrium microstructure and interfacial properties of amphiphiles at a liquid-liquid interface using the interfacial statistical associating fluid theory density functional theory as a molecular model for the system from the bulk to the interface. Insights into the molecular level physics and thermodynamics governing the system behavior are discussed as they relate to both predictions qualitatively consistent with experimental observations and extensions beyond currently available studies. © 2011 American Institute of Physics

Oscillations emerging from noise-driven steady state in networks with electrical synapses and subthreshold resonance

PubMed Central

Tchumatchenko, Tatjana; Clopath, Claudia

2014-01-01

Oscillations play a critical role in cognitive phenomena and have been observed in many brain regions. Experimental evidence indicates that classes of neurons exhibit properties that could promote oscillations, such as subthreshold resonance and electrical gap junctions. Typically, these two properties are studied separately but it is not clear which is the dominant determinant of global network rhythms. Our aim is to provide an analytical understanding of how these two effects destabilize the fluctuation-driven state, in which neurons fire irregularly, and lead to an emergence of global synchronous oscillations. Here we show how the oscillation frequency is shaped by single neuron resonance, electrical and chemical synapses.The presence of both gap junctions and subthreshold resonance are necessary for the emergence of oscillations. Our results are in agreement with several experimental observations such as network responses to oscillatory inputs and offer a much-needed conceptual link connecting a collection of disparate effects observed in networks. PMID:25405458

Observation and elimination of broken symmetry in L1{sub 0} FePt nanostructures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Quarterman, P.; Wang, Hao; Qiu, Jiao-Ming

2015-12-07

An unexplained surface anisotropy effect was observed and confirmed in the magnetization reversal process of both L1{sub 0} phase FePt nanoparticles with octahedral shape and (001) textured L1{sub 0} FePt thin films with island nanostructures. We suggest that the nature of the observed surface effect is caused by broken symmetry on the FePt surface, which results in weakened exchange coupling for surface atoms. Furthermore, we propose, and experimentally demonstrate, a method to repair the broken symmetry by capping the FePt islands with a Pt layer, which could prove invaluable in understanding fundamental limitations of magnetic nanostructures.

Absolute vacuum ultraviolet photoabsorption cross section studies of atomic and molecular species: Techniques and observational data

NASA Technical Reports Server (NTRS)

Judge, D. L.; Wu, C. Y. R.

1990-01-01

Absorption of a high energy photon (greater than 6 eV) by an isolated molecule results in the formation of highly excited quasi-discrete or continuum states which evolve through a wide range of direct and indirect photochemical processes. These are: photoionization and autoionization, photodissociation and predissociation, and fluorescence. The ultimate goal is to understand the dynamics of the excitation and decay processes and to quantitatively measure the absolute partial cross sections for all processes which occur in photoabsorption. Typical experimental techniques and the status of observational results of particular interest to solar system observations are presented.

An Experimental and Numerical Study on Cracking Behavior of Brittle Sandstone Containing Two Non-coplanar Fissures Under Uniaxial Compression

NASA Astrophysics Data System (ADS)

Yang, Sheng-Qi; Tian, Wen-Ling; Huang, Yan-Hua; Ranjith, P. G.; Ju, Yang

2016-04-01

To understand the fracture mechanism in all kinds of rock engineering, it is important to investigate the fracture evolution behavior of pre-fissured rock. In this research, we conducted uniaxial compression experiments to evaluate the influence of ligament angle on the strength, deformability, and fracture coalescence behavior of rectangular prismatic specimens (80 × 160 × 30 mm) of brittle sandstone containing two non-coplanar fissures. The experimental results show that the peak strength of sandstone containing two non-coplanar fissures depends on the ligament angle, but the elastic modulus is not closely related to the ligament angle. With the increase of ligament angle, the peak strength decreased at a ligament angle of 60°, before increasing up to our maximum ligament angle of 120°. Crack initiation, propagation, and coalescence were all observed and characterized from the inner and outer tips of pre-existing non-coplanar fissures using photographic monitoring. Based on the results, the sequence of crack evolution in sandstone containing two non-coplanar fissures was analyzed in detail. In order to fully understand the crack evolution mechanism of brittle sandstone, numerical simulations using PFC2D were performed for specimens containing two non-coplanar fissures under uniaxial compression. The results are in good agreement with the experimental results. By analyzing the stress field, the crack evolution mechanism in brittle sandstone containing two non-coplanar fissures under uniaxial compression is revealed. These experimental and numerical results are expected to improve the understanding of the unstable fracture mechanism of fissured rock engineering structures.

Promoting middle school students’ abstract-thinking ability through cognitive apprenticeship instruction in mathematics learning

NASA Astrophysics Data System (ADS)

Yusepa, B. G. P.; Kusumah, Y. S.; Kartasasmita, B. G.

2018-01-01

The aim of this study is to get an in-depth understanding of students’ abstract-thinking ability in mathematics learning. This study was an experimental research with pre-test and post-test control group design. The subject of this study was eighth-grade students from two junior high schools in Bandung. In each schools, two parallel groups were selected and assigned into control and experimental groups. The experimental group was exposed to Cognitive Apprenticeship Instruction (CAI) treatment, whereas the control group was exposed to conventional learning. The results showed that abstract-thinking ability of students in experimental group was better than that of those in control group in which it could be observed from the overall and school level. It could be concluded that CAI could be a good alternative learning model to enhance students’ abstract-thinking ability.

A Computational and Experimental Investigation of a Delta Wing with Vertical Tails

NASA Technical Reports Server (NTRS)

Krist. Sherrie L.; Washburn, Anthony E.; Visser, Kenneth D.

2004-01-01

The flow over an aspect ratio 1 delta wing with twin vertical tails is studied in a combined computational and experimental investigation. This research is conducted in an effort to understand the vortex and fin interaction process. The computational algorithm used solves both the thin-layer Navier-Stokes and the inviscid Euler equations and utilizes a chimera grid-overlapping technique. The results are compared with data obtained from a detailed experimental investigation. The laminar case presented is for an angle of attack of 20 and a Reynolds number of 500; 000. Good agreement is observed for the physics of the flow field, as evidenced by comparisons of computational pressure contours with experimental flow-visualization images, as well as by comparisons of vortex-core trajectories. While comparisons of the vorticity magnitudes indicate that the computations underpredict the magnitude in the wing primary-vortex-core region, grid embedding improves the computational prediction.

A computational and experimental investigation of a delta wing with vertical tails

NASA Technical Reports Server (NTRS)

Krist, Sherrie L.; Washburn, Anthony E.; Visser, Kenneth D.

1993-01-01

The flow over an aspect ratio 1 delta wing with twin vertical tails is studied in a combined computational and experimental investigation. This research is conducted in an effort to understand the vortex and fin interaction process. The computational algorithm used solves both the thin-layer Navier-Stokes and the inviscid Euler equations and utilizes a chimera grid-overlapping technique. The results are compared with data obtained from a detailed experimental investigation. The laminar case presented is for an angle of attack of 20 deg and a Reynolds number of 500,000. Good agreement is observed for the physics of the flow field, as evidenced by comparisons of computational pressure contours with experimental flow-visualization images, as well as by comparisons of vortex-core trajectories. While comparisons of the vorticity magnitudes indicate that the computations underpredict the magnitude in the wing primary-vortex-core region, grid embedding improves the computational prediction.

NASA/MSFC FY88 Global Scale Atmospheric Processes Research Program Review

NASA Technical Reports Server (NTRS)

Wilson, Greg S. (Editor); Leslie, Fred W. (Editor); Arnold, J. E. (Editor)

1989-01-01

Interest in environmental issues and the magnitude of the environmental changes continues. One way to gain more understanding of the atmosphere is to make measurements on a global scale from space. The Earth Observation System is a series of new sensors to measure globally atmospheric parameters. Analysis of satellite data by developing algorithms to interpret the radiance information improves the understanding and also defines requirements for these sensors. One measure of knowledge of the atmosphere lies in the ability to predict its behavior. Use of numerical and experimental models provides a better understanding of these processes. These efforts are described in the context of satellite data analysis and fundamental studies of atmospheric dynamics which examine selected processes important to the global circulation.

Understanding trends in electrochemical carbon dioxide reduction rates

DOE PAGES

Liu, Xinyan; Xiao, Jianping; Peng, Hongjie; ...

2017-05-22

Electrochemical carbon dioxide reduction to fuels presents one of the great challenges in chemistry. Herein we present an understanding of trends in electrocatalytic activity for carbon dioxide reduction over different metal catalysts that rationalize a number of experimental observations including the selectivity with respect to the competing hydrogen evolution reaction. We also identify two design criteria for more active catalysts. The understanding is based on density functional theory calculations of activation energies for electrochemical carbon monoxide reduction as a basis for an electrochemical kinetic model of the process. Furthermore, we develop scaling relations relating transition state energies to the carbonmore » monoxide adsorption energy and determine the optimal value of this descriptor to be very close to that of copper.« less

Understanding trends in electrochemical carbon dioxide reduction rates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Xinyan; Xiao, Jianping; Peng, Hongjie

Electrochemical carbon dioxide reduction to fuels presents one of the great challenges in chemistry. Herein we present an understanding of trends in electrocatalytic activity for carbon dioxide reduction over different metal catalysts that rationalize a number of experimental observations including the selectivity with respect to the competing hydrogen evolution reaction. We also identify two design criteria for more active catalysts. The understanding is based on density functional theory calculations of activation energies for electrochemical carbon monoxide reduction as a basis for an electrochemical kinetic model of the process. Furthermore, we develop scaling relations relating transition state energies to the carbonmore » monoxide adsorption energy and determine the optimal value of this descriptor to be very close to that of copper.« less

Validation of Lower Body Negative Pressure as an Experimental Model of Hemorrhage

DTIC Science & Technology

2013-12-19

saving intervention (15). Therefore it is important to develop a valid model for understanding the physiology of human hemorrhage especially during the...hemorrhage to investigate the physiological responses to hypovolemia (7). LBNP causes a reduction in pressure sur- rounding the lower extremities. As...from that observed with hemorrhage reflects the physiological mechanisms producing central hypovolemia. During LBNP, intravascular fluid shifts to the

Young Children's Understanding of Briefly versus Extremely Delayed Images of the Self: Emergence of the Autobiographical Stance.

ERIC Educational Resources Information Center

Povinelli, Daniel J.; Simon, Bridgett B.

1998-01-01

Videotaped preschoolers playing while experimenter covertly placed and later removed a large sticker on their head. Procedure was repeated one week later. Found that most four- and five-year-olds who observed video taken three minutes earlier reached for the sticker, but few who saw video taken a week earlier did so. Fewer than half of the…

Understanding magnetic remanence acquisition through combined synthetic sediment deposition experiments and numerical simulations.

NASA Astrophysics Data System (ADS)

Bilardello, D.

2014-12-01

Understanding depositional remanent magnetizations (DRMs) bears implications on interpreting paleomagnetic and paleointensity records extracted from sedimentary rocks. Laboratory deposition experiments have yielded DRMs with shallow remanent inclinations and revealed a field dependence of the magnetization (M), which is orders of magnitude lower than the saturation remanence. To investigate these observations further, experiments involving differently shaped particles were performed. Spherical particles confirmed the field dependence of both the inclination error and M and the fact that the DRM acquired experimentally is lower than saturation. A sediment concentration dependence of the inclination error was observed, indicating a dependance of the inclination error on the sediment load/burial depth or the sedimentation rate. Other outcome was the certainty that spherical particles alone can lead to substantial inclination shallowing. Numerical simulations of settling spherical particles indicated that DRM should be ~10 times lower than the saturation remanence and predicted that rolling of the grains on the sediment surface and particle interactions during settling can produce a substantial shallowing of the inclination and lowering of the remanence, bringing the simulations in close agreement to the experimental results. Experiments involving platy particles, instead allowed interesting comparisons and gave insight into the behavior of differently shaped particles, for instance yielding smaller amounts of shallowing than spheres, in contrast to general belief. Viewing DRM as an anisotropic process allows fitting the experimental results with tensors (kDRM). The ratios of kvertical over khorizontal are in good agreement to the ratios of M obtained in vertical over horizontal experimental fields, which should be equivalent to the widely used inclination shallowing factor f. Experimental results were highly repeatabile, however not always as repeatable for both M and inclination (direction) for both particle shapes, heighlighting that while a sediment might carry a stable remanent direction, it may not always be a particularily good paleointensity recorder.

Experimental Study on Ice Forming Process of Cryogenic Liquid Releasing underwater

NASA Astrophysics Data System (ADS)

Zhang, Bin; Wu, Wanqing; Zhang, Xingdong; Zhang, Yi; Zhang, Chuanlin; Zhang, Haoran; Wang, Peng

2017-11-01

Cryogenic liquid releasing into water would be a process combines hyperactive boiling with ice forming. There are still few researches on the experimental study on the environmental conditions for deciding ice forming speed and liquid surviving state. In this paper, to advance our understanding of ice forming deciding factors in the process of LN2 releasing underwater, a visualization experimental system is built. The results show that the pressure difference significantly influences the ice forming speed and liquid surviving distance, which is observed by the experiment and theoretically analysed by Kelvin-Helmholtz instability. Adding nucleating agent is helpful to provide ice nucleus which can accelerate the ice forming speed. Water flowing has some effect on changing pressure difference, which can affect the ice forming speed and liquid surviving distance.

Combustion of LOX with H2(sub g) under subcritical, critical, and supercritical conditions (Task 1) and experimental observation of dense spray and mixing of impinging jets (Task 2)

NASA Technical Reports Server (NTRS)

Kuo, K. K.; Hsieh, W. H.; Cheung, F. B.; Yang, A. S.; Brown, J. J.; Woodward, R. D.; Kline, M. C.; Burch, R. L.

1992-01-01

The objective was to achieve a better understanding of the combustion processes of liquid oxygen and gaseous hydrogen under broad range of pressure covering subcritical, critical, and supercritical conditions. The scope of the experimental work falls into the following areas: (1) design of the overall experimental setup; (2) modification of an existing windowed high pressure chamber; (3) design of the LOX feeding system; (4) provision of the safety features in the test rig design; (5) LOX cleanliness requirements; (6) cold shock testing; (7) implementation of data acquisition systems; (8) preliminary tests for system checkout; (9) modification of LOX feeding system; and (10) evaporation tests. Progress in each area is discussed.

Nondestructive evaluation of helicopter rotor blades using guided Lamb modes.

PubMed

Chakrapani, Sunil Kishore; Barnard, Daniel; Dayal, Vinay

2014-03-01

This paper presents an application for turning and direct modes in a complex composite laminate structure. The propagation and interaction of turning modes and fundamental Lamb modes are investigated in the skin, spar and web sections of a helicopter rotor blade. Finite element models were used to understand the various mode conversions at geometric discontinuities such as web-spar joints. Experimental investigation was carried out with the help of air coupled ultrasonic transducers. The turning and direct modes were confirmed with the help of particle displacements and velocities. Experimental B-Scans were performed on damaged and undamaged samples for qualitative and quantitative assessment of the structure. A strong correlation between the numerical and experimental results was observed and reported. Copyright © 2013 Elsevier B.V. All rights reserved.

Noise optimization of a regenerative automotive fuel pump

NASA Astrophysics Data System (ADS)

Wang, J. F.; Feng, H. H.; Mou, X. L.; Huang, Y. X.

2017-03-01

The regenerative pump used in automotive is facing a noise problem. To understand the mechanism in detail, Computational Fluid Dynamics (CFD) and Computational Acoustic Analysis (CAA) together were used to understand the fluid and acoustic characteristics of the fuel pump using ANSYS-CFX 15.0 and LMS Virtual. Lab Rev12, respectively. The CFD model and acoustical model were validated by mass flow rate test and sound pressure test, respectively. Comparing the computational and experimental results shows that sound pressure levels at the observer position are consistent at high frequencies, especially at blade passing frequency. After validating the models, several numerical models were analyzed in the study for noise improvement. It is observed that for configuration having greater number of impeller blades, noise level was significantly improved at blade passing frequency, when compared to that of the original model.

Venus Surface Composition Constrained by Observation and Experiment

NASA Astrophysics Data System (ADS)

Gilmore, Martha; Treiman, Allan; Helbert, Jörn; Smrekar, Suzanne

2017-11-01

New observations from the Venus Express spacecraft as well as theoretical and experimental investigation of Venus analogue materials have advanced our understanding of the petrology of Venus melts and the mineralogy of rocks on the surface. The VIRTIS instrument aboard Venus Express provided a map of the southern hemisphere of Venus at ˜1 μm allowing, for the first time, the definition of surface units in terms of their 1 μm emissivity and derived mineralogy. Tessera terrain has lower emissivity than the presumably basaltic plains, consistent with a more silica-rich or felsic mineralogy. Thermodynamic modeling and experimental production of melts with Venera and Vega starting compositions predict derivative melts that range from mafic to felsic. Large volumes of felsic melts require water and may link the formation of tesserae to the presence of a Venus ocean. Low emissivity rocks may also be produced by atmosphere-surface weathering reactions unlike those seen presently. High 1 μm emissivity values correlate to stratigraphically recent flows and have been used with theoretical and experimental predictions of basalt weathering to identify regions of recent volcanism. The timescale of this volcanism is currently constrained by the weathering of magnetite (higher emissivity) in fresh basalts to hematite (lower emissivity) in Venus' oxidizing environment. Recent volcanism is corroborated by transient thermal anomalies identified by the VMC instrument aboard Venus Express. The interpretation of all emissivity data depends critically on understanding the composition of surface materials, kinetics of rock weathering and their measurement under Venus conditions. Extended theoretical studies, continued analysis of earlier spacecraft results, new atmospheric data, and measurements of mineral stability under Venus conditions have improved our understanding atmosphere-surface interactions. The calcite-wollastonite CO2 buffer has been discounted due, among other things, to the rarity of wollastonite and instability of carbonate at the Venus surface. Sulfur in the Venus atmosphere has been shown experimentally to react with Ca in surface minerals to produce anhydrite. The extent of this SO2 buffer is constrained by the Ca content of surface rocks and sulfur content of the atmosphere, both of which are likely variable, perhaps due to active volcanism. Experimental work on a range of semiconductor and ferroelectric minerals is placing constraints on the cause(s) of Venus' anomalously radar bright highlands.

Cavitation nucleation in gelatin: Experiment and mechanism.

PubMed

Kang, Wonmo; Adnan, Ashfaq; O'Shaughnessy, Thomas; Bagchi, Amit

2018-02-01

Dynamic cavitation in soft materials is becoming increasingly relevant due to emerging medical implications such as the potential of cavitation-induced brain injury or cavitation created by therapeutic medical devices. However, the current understanding of dynamic cavitation in soft materials is still very limited, mainly due to lack of robust experimental techniques. To experimentally characterize cavitation nucleation under dynamic loading, we utilize a recently developed experimental instrument, the integrated drop tower system. This technique allows quantitative measurements of the critical acceleration (a cr ) that corresponds to cavitation nucleation while concurrently visualizing time evolution of cavitation. Our experimental results reveal that a cr increases with increasing concentration of gelatin in pure water. Interestingly, we have observed the distinctive transition from a sharp increase (pure water to 1% gelatin) to a much slower rate of increase (∼10× slower) between 1% and 7.5% gelatin. Theoretical cavitation criterion predicts the general trend of increasing a cr , but fails to explain the transition rates. As a likely mechanism, we consider concentration-dependent material properties and non-spherical cavitation nucleation sites, represented by pre-existing bubbles in gels, due to possible interplay between gelatin molecules and nucleation sites. This analysis shows that cavitation nucleation is very sensitive to the initial configuration of a bubble, i.e., a non-spherical bubble can significantly increase a cr . This conclusion matches well with the experimentally observed liquid-to-gel transition in the critical acceleration for cavitation nucleation. From a medical standpoint, understanding dynamic cavitation within soft materials, i.e., tissues, is important as there are both potential injury implications (blast-induced cavitation within the brain) as well as treatments utilizing the phenomena (lithotripsy). In this regard, the main results of the present work are (1) quantitative characterization of cavitation nucleation in gelatin samples as a function of gel concentration utilizing well-controlled mechanical impacts and (2) mechanistic understanding of complex coupling between cavitation and liquid-/solid-like material properties of gel. The new capabilities of testing soft gels, which can be tuned to mimic material properties of target organs, at high loading rate conditions and accurately predicting their cavitation behavior are an important step towards developing reliable cavitation criteria in the scope of their biomedical applications. Copyright © 2017 Acta Materialia Inc. All rights reserved.

Computational Modelling of Patella Femoral Kinematics During Gait Cycle and Experimental Validation

NASA Astrophysics Data System (ADS)

Maiti, Raman

2016-06-01

The effect of loading and boundary conditions on patellar mechanics is significant due to the complications arising in patella femoral joints during total knee replacements. To understand the patellar mechanics with respect to loading and motion, a computational model representing the patella femoral joint was developed and validated against experimental results. The computational model was created in IDEAS NX and simulated in MSC ADAMS/VIEW software. The results obtained in the form of internal external rotations and anterior posterior displacements for a new and experimentally simulated specimen for patella femoral joint under standard gait condition were compared with experimental measurements performed on the Leeds ProSim knee simulator. A good overall agreement between the computational prediction and the experimental data was obtained for patella femoral kinematics. Good agreement between the model and the past studies was observed when the ligament load was removed and the medial lateral displacement was constrained. The model is sensitive to ±5 % change in kinematics, frictional, force and stiffness coefficients and insensitive to time step.

Computational Modelling of Patella Femoral Kinematics During Gait Cycle and Experimental Validation

NASA Astrophysics Data System (ADS)

Maiti, Raman

2018-06-01

The effect of loading and boundary conditions on patellar mechanics is significant due to the complications arising in patella femoral joints during total knee replacements. To understand the patellar mechanics with respect to loading and motion, a computational model representing the patella femoral joint was developed and validated against experimental results. The computational model was created in IDEAS NX and simulated in MSC ADAMS/VIEW software. The results obtained in the form of internal external rotations and anterior posterior displacements for a new and experimentally simulated specimen for patella femoral joint under standard gait condition were compared with experimental measurements performed on the Leeds ProSim knee simulator. A good overall agreement between the computational prediction and the experimental data was obtained for patella femoral kinematics. Good agreement between the model and the past studies was observed when the ligament load was removed and the medial lateral displacement was constrained. The model is sensitive to ±5 % change in kinematics, frictional, force and stiffness coefficients and insensitive to time step.

Closed Loop Two-Phase Thermosyphon of Small Dimensions: a Review of the Experimental Results

NASA Astrophysics Data System (ADS)

Franco, Alessandro; Filippeschi, Sauro

2012-06-01

A bibliographical review on the heat and mass transfer in gravity assisted Closed Loop Two Phase Thermosyphons (CLTPT) with channels having a hydraulic diameter of the order of some millimetres and input power below 1 kW is proposed. The available experimental works in the literature are critically analysed in order to highlight the main results and the correlation between mass flow rate and heat input in natural circulation loops. A comparison of different experimental apparatuses and results is made. It is observed that the results are very different among them and in many cases the experimental data disagree with the conventional theory developed for an imposed flow rate. The paper analyses the main differences among the experimental devices and try to understand these disagreements. From the present analysis it is evident that further systematic studies are required to generate a meaningful body of knowledge of the heat and mass transport mechanism in these devices for practical applications in cooling devices or energy systems.

Video-induced yawning in stumptail macaques (Macaca arctoides)

PubMed Central

Paukner, Annika; Anderson, James R

2005-01-01

This study reports the first experimental exploration of possible contagious yawning in monkeys. Twenty-two stumptail macaques (Macaca arctoides) were presented with video clips of either yawns or control mouth movements by conspecifics. At a group level, monkeys yawned significantly more often during and just after the yawn tape than the control tape. Supplementary analysis revealed that the yawn tape also elicited significantly more self-directed scratching responses than the control tape, which suggests that yawning might have been caused by tension arising from viewing the yawn tape. Understanding to what extent the observed effect resembles contagious yawning as found in humans and chimpanzees requires more detailed experimentation. PMID:17148320

New approach in the quantum statistical parton distribution

NASA Astrophysics Data System (ADS)

Sohaily, Sozha; Vaziri (Khamedi), Mohammad

2017-12-01

An attempt to find simple parton distribution functions (PDFs) based on quantum statistical approach is presented. The PDFs described by the statistical model have very interesting physical properties which help to understand the structure of partons. The longitudinal portion of distribution functions are given by applying the maximum entropy principle. An interesting and simple approach to determine the statistical variables exactly without fitting and fixing parameters is surveyed. Analytic expressions of the x-dependent PDFs are obtained in the whole x region [0, 1], and the computed distributions are consistent with the experimental observations. The agreement with experimental data, gives a robust confirm of our simple presented statistical model.

Geometric tuning of self-propulsion for Janus catalytic particles

NASA Astrophysics Data System (ADS)

Michelin, Sébastien; Lauga, Eric

2017-02-01

Catalytic swimmers have attracted much attention as alternatives to biological systems for examining collective microscopic dynamics and the response to physico-chemical signals. Yet, understanding and predicting even the most fundamental characteristics of their individual propulsion still raises important challenges. While chemical asymmetry is widely recognized as the cornerstone of catalytic propulsion, different experimental studies have reported that particles with identical chemical properties may propel in opposite directions. Here, we show that, beyond its chemical properties, the detailed shape of a catalytic swimmer plays an essential role in determining its direction of motion, demonstrating the compatibility of the classical theoretical framework with experimental observations.

Geometric tuning of self-propulsion for Janus catalytic particles

PubMed Central

Michelin, Sébastien; Lauga, Eric

2017-01-01

Catalytic swimmers have attracted much attention as alternatives to biological systems for examining collective microscopic dynamics and the response to physico-chemical signals. Yet, understanding and predicting even the most fundamental characteristics of their individual propulsion still raises important challenges. While chemical asymmetry is widely recognized as the cornerstone of catalytic propulsion, different experimental studies have reported that particles with identical chemical properties may propel in opposite directions. Here, we show that, beyond its chemical properties, the detailed shape of a catalytic swimmer plays an essential role in determining its direction of motion, demonstrating the compatibility of the classical theoretical framework with experimental observations. PMID:28205563

Geometric tuning of self-propulsion for Janus catalytic particles.

PubMed

Michelin, Sébastien; Lauga, Eric

2017-02-13

Catalytic swimmers have attracted much attention as alternatives to biological systems for examining collective microscopic dynamics and the response to physico-chemical signals. Yet, understanding and predicting even the most fundamental characteristics of their individual propulsion still raises important challenges. While chemical asymmetry is widely recognized as the cornerstone of catalytic propulsion, different experimental studies have reported that particles with identical chemical properties may propel in opposite directions. Here, we show that, beyond its chemical properties, the detailed shape of a catalytic swimmer plays an essential role in determining its direction of motion, demonstrating the compatibility of the classical theoretical framework with experimental observations.

Evidence for {100}<011> slip in ferropericlase in Earth's lower mantle from high-pressure/high-temperature experiments

NASA Astrophysics Data System (ADS)

Immoor, J.; Marquardt, H.; Miyagi, L.; Lin, F.; Speziale, S.; Merkel, S.; Buchen, J.; Kurnosov, A.; Liermann, H.-P.

2018-05-01

Seismic anisotropy in Earth's lowermost mantle, resulting from Crystallographic Preferred Orientation (CPO) of elastically anisotropic minerals, is among the most promising observables to map mantle flow patterns. A quantitative interpretation, however, is hampered by the limited understanding of CPO development in lower mantle minerals at simultaneously high pressures and temperatures. Here, we experimentally determine CPO formation in ferropericlase, one of the elastically most anisotropic deep mantle phases, at pressures of the lower mantle and temperatures of up to 1400 K using a novel experimental setup. Our data reveal a significant contribution of slip on {100} to ferropericlase CPO in the deep lower mantle, contradicting previous inferences based on experimental work at lower mantle pressures but room temperature. We use our results along with a geodynamic model to show that deformed ferropericlase produces strong shear wave anisotropy in the lowermost mantle, where horizontally polarized shear waves are faster than vertically polarized shear waves, consistent with seismic observations. We find that ferropericlase alone can produce the observed seismic shear wave splitting in D″ in regions of downwelling, which may be further enhanced by post-perovskite. Our model further shows that the interplay between ferropericlase (causing VSH > VSV) and bridgmanite (causing VSV > VSH) CPO can produce a more complex anisotropy patterns as observed in regions of upwelling at the margin of the African Large Low Shear Velocity Province.

Moving forward in circles: challenges and opportunities in modelling population cycles.

PubMed

Barraquand, Frédéric; Louca, Stilianos; Abbott, Karen C; Cobbold, Christina A; Cordoleani, Flora; DeAngelis, Donald L; Elderd, Bret D; Fox, Jeremy W; Greenwood, Priscilla; Hilker, Frank M; Murray, Dennis L; Stieha, Christopher R; Taylor, Rachel A; Vitense, Kelsey; Wolkowicz, Gail S K; Tyson, Rebecca C

2017-08-01

Population cycling is a widespread phenomenon, observed across a multitude of taxa in both laboratory and natural conditions. Historically, the theory associated with population cycles was tightly linked to pairwise consumer-resource interactions and studied via deterministic models, but current empirical and theoretical research reveals a much richer basis for ecological cycles. Stochasticity and seasonality can modulate or create cyclic behaviour in non-intuitive ways, the high-dimensionality in ecological systems can profoundly influence cycling, and so can demographic structure and eco-evolutionary dynamics. An inclusive theory for population cycles, ranging from ecosystem-level to demographic modelling, grounded in observational or experimental data, is therefore necessary to better understand observed cyclical patterns. In turn, by gaining better insight into the drivers of population cycles, we can begin to understand the causes of cycle gain and loss, how biodiversity interacts with population cycling, and how to effectively manage wildly fluctuating populations, all of which are growing domains of ecological research. © 2017 John Wiley & Sons Ltd/CNRS.

Moving forward in circles: Challenges and opportunities in modeling population cycles

USGS Publications Warehouse

Barraquand, Frederic; Louca, Stilianos; Abbott, Karen C; Cobbold, Christina A; Cordoleani, Flora; DeAngelis, Donald L.; Elderd, Bret D; Fox, Jeremy W; Greenwood, Priscilla; Hilker, Frank M; Murray, Dennis; Stieha, Christopher R; Taylor, Rachel A; Vitense, Kelsey; Wolkowicz, Gail; Tyson, Rebecca C

2017-01-01

Population cycling is a widespread phenomenon, observed across a multitude of taxa in both laboratory and natural conditions. Historically, the theory associated with population cycles was tightly linked to pairwise consumer–resource interactions and studied via deterministic models, but current empirical and theoretical research reveals a much richer basis for ecological cycles. Stochasticity and seasonality can modulate or create cyclic behaviour in non-intuitive ways, the high-dimensionality in ecological systems can profoundly influence cycling, and so can demographic structure and eco-evolutionary dynamics. An inclusive theory for population cycles, ranging from ecosystem-level to demographic modelling, grounded in observational or experimental data, is therefore necessary to better understand observed cyclical patterns. In turn, by gaining better insight into the drivers of population cycles, we can begin to understand the causes of cycle gain and loss, how biodiversity interacts with population cycling, and how to effectively manage wildly fluctuating populations, all of which are growing domains of ecological research.

Scientific Thinking in Elementary School: Children's Social Cognition and Their Epistemological Understanding Promote Experimentation Skills

ERIC Educational Resources Information Center

Osterhaus, Christopher; Koerber, Susanne; Sodian, Beate

2017-01-01

Do social cognition and epistemological understanding promote elementary school children's experimentation skills? To investigate this question, 402 children (ages 8, 9, and 10) in 2nd, 3rd, and 4th grades were assessed for their experimentation skills, social cognition (advanced theory of mind [AToM]), epistemological understanding (understanding…

The Complicate Observations and Multi-Parameter Land Information Constructions on Allied Telemetry Experiment (COMPLICATE)

PubMed Central

Tian, Xin; Li, Zengyuan; Chen, Erxue; Liu, Qinhuo; Yan, Guangjian; Wang, Jindi; Niu, Zheng; Zhao, Shaojie; Li, Xin; Pang, Yong; Su, Zhongbo; van der Tol, Christiaan; Liu, Qingwang; Wu, Chaoyang; Xiao, Qing; Yang, Le; Mu, Xihan; Bo, Yanchen; Qu, Yonghua; Zhou, Hongmin; Gao, Shuai; Chai, Linna; Huang, Huaguo; Fan, Wenjie; Li, Shihua; Bai, Junhua; Jiang, Lingmei; Zhou, Ji

2015-01-01

The Complicate Observations and Multi-Parameter Land Information Constructions on Allied Telemetry Experiment (COMPLICATE) comprises a network of remote sensing experiments designed to enhance the dynamic analysis and modeling of remotely sensed information for complex land surfaces. Two types of experimental campaigns were established under the framework of COMPLICATE. The first was designed for continuous and elaborate experiments. The experimental strategy helps enhance our understanding of the radiative and scattering mechanisms of soil and vegetation and modeling of remotely sensed information for complex land surfaces. To validate the methodologies and models for dynamic analyses of remote sensing for complex land surfaces, the second campaign consisted of simultaneous satellite-borne, airborne, and ground-based experiments. During field campaigns, several continuous and intensive observations were obtained. Measurements were undertaken to answer key scientific issues, as follows: 1) Determine the characteristics of spatial heterogeneity and the radiative and scattering mechanisms of remote sensing on complex land surfaces. 2) Determine the mechanisms of spatial and temporal scale extensions for remote sensing on complex land surfaces. 3) Determine synergist inversion mechanisms for soil and vegetation parameters using multi-mode remote sensing on complex land surfaces. Here, we introduce the background, the objectives, the experimental designs, the observations and measurements, and the overall advances of COMPLICATE. As a result of the implementation of COMLICATE and for the next several years, we expect to contribute to quantitative remote sensing science and Earth observation techniques. PMID:26332035

Experimental evolution in biofilm populations

PubMed Central

Steenackers, Hans P.; Parijs, Ilse; Foster, Kevin R.; Vanderleyden, Jozef

2016-01-01

Biofilms are a major form of microbial life in which cells form dense surface associated communities that can persist for many generations. The long-life of biofilm communities means that they can be strongly shaped by evolutionary processes. Here, we review the experimental study of evolution in biofilm communities. We first provide an overview of the different experimental models used to study biofilm evolution and their associated advantages and disadvantages. We then illustrate the vast amount of diversification observed during biofilm evolution, and we discuss (i) potential ecological and evolutionary processes behind the observed diversification, (ii) recent insights into the genetics of adaptive diversification, (iii) the striking degree of parallelism between evolution experiments and real-life biofilms and (iv) potential consequences of diversification. In the second part, we discuss the insights provided by evolution experiments in how biofilm growth and structure can promote cooperative phenotypes. Overall, our analysis points to an important role of biofilm diversification and cooperation in bacterial survival and productivity. Deeper understanding of both processes is of key importance to design improved antimicrobial strategies and diagnostic techniques. PMID:26895713

Strong Dzyaloshinskii-Moriya Interaction and Origin of Ferroelectricity in Cu2OSeO3

NASA Astrophysics Data System (ADS)

Yang, Ji-Hui; Li, Zheng-Lu; Lu, Xuezeng; Gong, X. G.; Xiang, Hongjun; Whangbo, M.-H.; Wei, Su-Huai

2013-03-01

In this work, we try to understand the skyrmions recently observed experimentally in Cu2OSeO3 system, as well as its origin of ferroelectricity. Based on the spin Hamiltonian, we developed four-state-energy-mapping method to derive these spin interaction parameters. For this system, we found a very large ratio between the DM term and the symmetric exchange interaction. Besides, the spin arrangements in the ground state are found degenerate and the spin energy is independent of the propagation vector q. Taking these two factors into account, we explained the experimental observation of skyrmions to some extent. Then we built a model to describe the polarization of this system. By the symmetry analysis, the ferroelectricity is supposed to result from the spin single-site term, as is confirmed by direct calculations of our model. Using this model, we analyzed its ferroelectricity dependence of the spin arrangement and find the largest polarization happens when the spins are along <111> direction, in excellent agreement with the experimental results. NSFC, Special Funds for Major State Basic Research, Pujiang plan, FANEDD

Experimental evolution in biofilm populations.

PubMed

Steenackers, Hans P; Parijs, Ilse; Dubey, Akanksha; Foster, Kevin R; Vanderleyden, Jozef

2016-05-01

Biofilms are a major form of microbial life in which cells form dense surface associated communities that can persist for many generations. The long-life of biofilm communities means that they can be strongly shaped by evolutionary processes. Here, we review the experimental study of evolution in biofilm communities. We first provide an overview of the different experimental models used to study biofilm evolution and their associated advantages and disadvantages. We then illustrate the vast amount of diversification observed during biofilm evolution, and we discuss (i) potential ecological and evolutionary processes behind the observed diversification, (ii) recent insights into the genetics of adaptive diversification, (iii) the striking degree of parallelism between evolution experiments and real-life biofilms and (iv) potential consequences of diversification. In the second part, we discuss the insights provided by evolution experiments in how biofilm growth and structure can promote cooperative phenotypes. Overall, our analysis points to an important role of biofilm diversification and cooperation in bacterial survival and productivity. Deeper understanding of both processes is of key importance to design improved antimicrobial strategies and diagnostic techniques. © FEMS 2016.

Strong anisotropy effect in an iron-based superconductor CaFe0.882Co0.118AsF

NASA Astrophysics Data System (ADS)

Ma, Yonghui; Ji, Qiucheng; Hu, Kangkang; Gao, Bo; Li, Wei; Mu, Gang; Xie, Xiaoming

2017-07-01

The anisotropy of iron-based superconductors is much smaller than that of the cuprates and that predicted by theoretical calculations. A credible understanding for this experimental fact is still lacking up to now. Here we experimentally study the magnetic-field-angle dependence of electronic resistivity in the superconducting phase of an iron-based superconductor CaFe{}0.882Co{}0.118AsF, and find the strongest anisotropy effect of the upper critical field among the iron-based superconductors based on the framework of Ginzburg-Landau theory. The evidence of the energy band structure and charge density distribution from electronic structure calculations demonstrates that the observed strong anisotropic effect mainly comes from the strong ionic bonding in between the ions of Ca2+ and F-, which weakens the interlayer coupling between the layers of FeAs and CaF. This finding provides a significant insight into the nature of the experimentally-observed strong anisotropic effect of electronic resistivity, and also paves the way for designing exotic two-dimensional artificial unconventional superconductors in the future.

Analysis of pre-service physics teacher skills designing simple physics experiments based technology

NASA Astrophysics Data System (ADS)

Susilawati; Huda, C.; Kurniawan, W.; Masturi; Khoiri, N.

2018-03-01

Pre-service physics teacher skill in designing simple experiment set is very important in adding understanding of student concept and practicing scientific skill in laboratory. This study describes the skills of physics students in designing simple experiments based technologicall. The experimental design stages include simple tool design and sensor modification. The research method used is descriptive method with the number of research samples 25 students and 5 variations of simple physics experimental design. Based on the results of interviews and observations obtained the results of pre-service physics teacher skill analysis in designing simple experimental physics charged technology is good. Based on observation result, pre-service physics teacher skill in designing simple experiment is good while modification and sensor application are still not good. This suggests that pre-service physics teacher still need a lot of practice and do experiments in designing physics experiments using sensor modifications. Based on the interview result, it is found that students have high enough motivation to perform laboratory activities actively and students have high curiosity to be skilled at making simple practicum tool for physics experiment.

Effects of developmental variability on the dynamics and self-organization of cell populations

NASA Astrophysics Data System (ADS)

Prabhakara, Kaumudi H.; Gholami, Azam; Zykov, Vladimir S.; Bodenschatz, Eberhard

2017-11-01

We report experimental and theoretical results for spatiotemporal pattern formation in cell populations, where the parameters vary in space and time due to mechanisms intrinsic to the system, namely Dictyostelium discoideum (D.d.) in the starvation phase. We find that different patterns are formed when the populations are initialized at different developmental stages, or when populations at different initial developmental stages are mixed. The experimentally observed patterns can be understood with a modified Kessler-Levine model that takes into account the initial spatial heterogeneity of the cell populations and a developmental path introduced by us, i.e. the time dependence of the various biochemical parameters. The dynamics of the parameters agree with known biochemical studies. Most importantly, the modified model reproduces not only our results, but also the observations of an independent experiment published earlier. This shows that pattern formation can be used to understand and quantify the temporal evolution of the system parameters.

Ultrafast spectral dynamics of dual-color-soliton intracavity collision in a mode-locked fiber laser

NASA Astrophysics Data System (ADS)

Wei, Yuan; Li, Bowen; Wei, Xiaoming; Yu, Ying; Wong, Kenneth K. Y.

2018-02-01

The single-shot spectral dynamics of dual-color-soliton collisions inside a mode-locked laser is experimentally and numerically investigated. By using the all-optically dispersive Fourier transform, we spectrally unveil the collision-induced soliton self-reshaping process, which features dynamic spectral fringes over the soliton main lobe, and the rebuilding of Kelly sidebands with wavelength drifting. Meanwhile, the numerical simulations validate the experimental observation and provide additional insights into the physical mechanism of the collision-induced spectral dynamics from the temporal domain perspective. It is verified that the dynamic interference between the soliton and the dispersive waves is responsible for the observed collision-induced spectral evolution. These dynamic phenomena not only demonstrate the role of dispersive waves in the sophisticated soliton interaction inside the laser cavity, but also facilitate a deeper understanding of the soliton's inherent stability.

Kinetics of carbon clustering in detonation of high explosives: Does theory match experiment?

NASA Astrophysics Data System (ADS)

Velizhanin, Kirill; Watkins, Erik; Dattelbaum, Dana; Gustavsen, Richard; Aslam, Tariq; Podlesak, David; Firestone, Millicent; Huber, Rachel; Ringstrand, Bryan; Willey, Trevor; Bagge-Hansen, Michael; Hodgin, Ralph; Lauderbach, Lisa; van Buuren, Tony; Sinclair, Nicholas; Rigg, Paulo; Seifert, Soenke; Gog, Thomas

2017-06-01

Chemical reactions in detonation of carbon-rich high explosives yield carbon clusters as major constituents of the products. Efforts to model carbon clustering as a diffusion-limited irreversible coagulation of carbon clusters go back to the seminal paper by Shaw and Johnson. However, first direct experimental observations of the kinetics of clustering yielded cluster growth one to two orders of magnitude slower than theoretical predictions. Multiple efforts were undertaken to test and revise the basic assumptions of the model in order to achieve better agreement with experiment. We discuss our very recent direct experimental observations of carbon clustering dynamics and demonstrate that these new results are in much better agreement with the modified Shaw-Johnson model. The implications of this much better agreement on our present understanding of detonation carbon clustering processes and possible ways to increase the agreement between theory and experiment even further are discussed.

Towards understanding addiction factors of mobile devices: An eye tracking study on effect of screen size.

PubMed

Wibirama, Sunu; Nugroho, Hanung A

2017-07-01

Mobile devices addiction has been an important research topic in cognitive science, mental health, and human-machine interaction. Previous works observed mobile device addiction by logging mobile devices activity. Although immersion has been linked as a significant predictor of video game addiction, investigation on addiction factors of mobile device with behavioral measurement has never been done before. In this research, we demonstrated the usage of eye tracking to observe effect of screen size on experience of immersion. We compared subjective judgment with eye movements analysis. Non-parametric analysis on immersion score shows that screen size affects experience of immersion (p<;0.05). Furthermore, our experimental results suggest that fixational eye movements may be used as an indicator for future investigation of mobile devices addiction. Our experimental results are also useful to develop a guideline as well as intervention strategy to deal with smartphone addiction.

Dehydrogenation of methanol to formaldehyde catalyzed by pristine and defective ceria surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beste, Ariana; Overbury, Steven H.

We have explored the dehydrogenation of methoxy on pristine and defective (111), (100), and (110) ceria surfaces with density functional methods. Methanol conversion is used as a probe reaction to understand structure sensitivity of the oxide catalysis. Differences in reaction selectivity have been observed experimentally as a function of crystallographically exposed faces and degree of reduction. We find that the barrier for carbon-hydrogen cleavage in methoxy is similar for the pristine and defective (111), (100), and (110) surfaces. However, there are large differences in the stability of the surface intermediates on the different surfaces. The variations in experimentally observed productmore » selectivities are a consequence of the interplay between barrier controlled bond cleavage and desorption processes. Ultimately, subtle differences in activation energies for carbon-hydrogen cleavage on the different crystallographic faces of ceria could not be correlated with structural or electronic descriptors.« less

Dehydrogenation of methanol to formaldehyde catalyzed by pristine and defective ceria surfaces

DOE PAGES

Beste, Ariana; Overbury, Steven H.

2016-03-09

We have explored the dehydrogenation of methoxy on pristine and defective (111), (100), and (110) ceria surfaces with density functional methods. Methanol conversion is used as a probe reaction to understand structure sensitivity of the oxide catalysis. Differences in reaction selectivity have been observed experimentally as a function of crystallographically exposed faces and degree of reduction. We find that the barrier for carbon-hydrogen cleavage in methoxy is similar for the pristine and defective (111), (100), and (110) surfaces. However, there are large differences in the stability of the surface intermediates on the different surfaces. The variations in experimentally observed productmore » selectivities are a consequence of the interplay between barrier controlled bond cleavage and desorption processes. Ultimately, subtle differences in activation energies for carbon-hydrogen cleavage on the different crystallographic faces of ceria could not be correlated with structural or electronic descriptors.« less

Dehydrogenation of methanol to formaldehyde catalyzed by pristine and defective ceria surfaces.

PubMed

Beste, Ariana; Overbury, Steven H

2016-04-21

We have explored the dehydrogenation of methoxy on pristine and defective (111), (100), and (110) ceria surfaces with density functional methods. Methanol conversion is used as a probe reaction to understand structure sensitivity of the oxide catalysis. Differences in reaction selectivity have been observed experimentally as a function of crystallographically exposed faces and degree of reduction. We find that the barrier for carbon-hydrogen cleavage in methoxy is similar for the pristine and defective (111), (100), and (110) surfaces. However, there are large differences in the stability of the surface intermediates on the different surfaces. The variations in experimentally observed product selectivities are a consequence of the interplay between barrier controlled bond cleavage and desorption processes. Subtle differences in activation energies for carbon-hydrogen cleavage on the different crystallographic faces of ceria could not be correlated with structural or electronic descriptors.

Experimental observation of negative effective gravity in water waves.

PubMed

Hu, Xinhua; Yang, Jiong; Zi, Jian; Chan, C T; Ho, Kai-Ming

2013-01-01

The gravity of Earth is responsible for the formation of water waves and usually difficult to change. Although negative effective gravity was recently predicted theoretically in water waves, it has not yet been observed in experiments and remains a mathematical curiosity which is difficult to understand. Here we experimentally demonstrate that close to the resonant frequency of purposely-designed resonating units, negative effective gravity can occur for water waves passing through an array of resonators composing of bottom-mounted split tubes, resulting in the prohibition of water wave propagation. It is found that when negative gravity occurs, the averaged displacement of water surface in a unit cell of the array has a phase difference of π to that along the boundary of the unit cell, consistent with theoretical predictions. Our results provide a mechanism to block water waves and may find applications in wave energy conversion and coastal protection.

Experimentally modeling stochastic processes with less memory by the use of a quantum processor

PubMed Central

Palsson, Matthew S.; Gu, Mile; Ho, Joseph; Wiseman, Howard M.; Pryde, Geoff J.

2017-01-01

Computer simulation of observable phenomena is an indispensable tool for engineering new technology, understanding the natural world, and studying human society. However, the most interesting systems are often so complex that simulating their future behavior demands storing immense amounts of information regarding how they have behaved in the past. For increasingly complex systems, simulation becomes increasingly difficult and is ultimately constrained by resources such as computer memory. Recent theoretical work shows that quantum theory can reduce this memory requirement beyond ultimate classical limits, as measured by a process’ statistical complexity, C. We experimentally demonstrate this quantum advantage in simulating stochastic processes. Our quantum implementation observes a memory requirement of Cq = 0.05 ± 0.01, far below the ultimate classical limit of C = 1. Scaling up this technique would substantially reduce the memory required in simulations of more complex systems. PMID:28168218

Experimental Observation of Negative Effective Gravity in Water Waves

PubMed Central

Hu, Xinhua; Yang, Jiong; Zi, Jian; Chan, C. T.; Ho, Kai-Ming

2013-01-01

The gravity of Earth is responsible for the formation of water waves and usually difficult to change. Although negative effective gravity was recently predicted theoretically in water waves, it has not yet been observed in experiments and remains a mathematical curiosity which is difficult to understand. Here we experimentally demonstrate that close to the resonant frequency of purposely-designed resonating units, negative effective gravity can occur for water waves passing through an array of resonators composing of bottom-mounted split tubes, resulting in the prohibition of water wave propagation. It is found that when negative gravity occurs, the averaged displacement of water surface in a unit cell of the array has a phase difference of π to that along the boundary of the unit cell, consistent with theoretical predictions. Our results provide a mechanism to block water waves and may find applications in wave energy conversion and coastal protection. PMID:23715132

Understanding the oriented-attachment growth of nanocrystals from an energy point of view: a review

NASA Astrophysics Data System (ADS)

Lv, Weiqiang; He, Weidong; Wang, Xiaoning; Niu, Yinghua; Cao, Huanqi; Dickerson, James H.; Wang, Zhiguo

2014-02-01

Since Penn et al. first discovered the oriented attachment growth of crystals, the oriented attachment mechanism has now become a major research focus in the crystal field, and extensive efforts have been carried out over the past decade to systematically investigate the growth mechanism and the statistical kinetic models. However, most of the work mainly focuses on the experimental results on the oriented attachment growth. In contrast to the previous reviews, our review provides an overview of the recent theoretical advances in oriented attachment kinetics combined with experimental evidences. After a brief introduction to the van der Waals interaction and Coulombic interaction in a colloidal system, the correlation between the kinetic models of oriented attachment growth and the interactions is then our focus. The impact of in situ experimental observation techniques on the study of oriented attachment growth is examined with insightful examples. In addition, the advances in theoretical simulations mainly investigating the thermodynamic origin of these interactions at the atomic level are reviewed. This review seeks to understand the oriented attachment crystal growth from a kinetic point of view and provide a quantitative methodology to rationally design an oriented attachment system with pre-evaluated crystal growth parameters.

Experimental public speaking: contributions to the understanding of the serotonergic modulation of fear.

PubMed

Garcia-Leal, Cybele; Graeff, Frederico Guilherme; Del-Ben, Cristina Marta

2014-10-01

Public speaking is widely used as a model of experimental fear and anxiety. This review aimed to evaluate the effects of pharmacological challenges on public speaking responses and their implications for the understanding of the neurobiology of normal and pathological anxiety, specifically panic disorder. We also describe methodological features of experimental paradigms using public speaking as an inducer of fear and stress. Public speaking is a potent stressor that can provoke significant subjective and physiological responses. However, variations in the manners in which public speaking is modelled can lead to different responses that need to be considered when interpreting the results. Results from pharmacological studies with healthy volunteers submitted to simulated public speaking tests have similarities with the pharmacological responses of panic patients observed in clinical practice and panic patients differ from controls in the response to the public speaking test. These data are compatible with the Deakin and Graeff hypothesis that serotonin inhibits fear, as accessed by public speaking tasks, and that this inhibition is likely related to the actions of serotonin in the dorsal periaqueductal grey matter. Copyright © 2014 Elsevier Ltd. All rights reserved.

A framework for testing and comparing binaural models.

PubMed

Dietz, Mathias; Lestang, Jean-Hugues; Majdak, Piotr; Stern, Richard M; Marquardt, Torsten; Ewert, Stephan D; Hartmann, William M; Goodman, Dan F M

2018-03-01

Auditory research has a rich history of combining experimental evidence with computational simulations of auditory processing in order to deepen our theoretical understanding of how sound is processed in the ears and in the brain. Despite significant progress in the amount of detail and breadth covered by auditory models, for many components of the auditory pathway there are still different model approaches that are often not equivalent but rather in conflict with each other. Similarly, some experimental studies yield conflicting results which has led to controversies. This can be best resolved by a systematic comparison of multiple experimental data sets and model approaches. Binaural processing is a prominent example of how the development of quantitative theories can advance our understanding of the phenomena, but there remain several unresolved questions for which competing model approaches exist. This article discusses a number of current unresolved or disputed issues in binaural modelling, as well as some of the significant challenges in comparing binaural models with each other and with the experimental data. We introduce an auditory model framework, which we believe can become a useful infrastructure for resolving some of the current controversies. It operates models over the same paradigms that are used experimentally. The core of the proposed framework is an interface that connects three components irrespective of their underlying programming language: The experiment software, an auditory pathway model, and task-dependent decision stages called artificial observers that provide the same output format as the test subject. Copyright © 2017 Elsevier B.V. All rights reserved.

The effect of learning multimedia on students’ understanding of macroscopic, sub-microscopic, and symbolic levels in electrolyte and nonelectrolyte

NASA Astrophysics Data System (ADS)

Eliyawati; Rohman, I.; Kadarohman, A.

2018-05-01

This research aims to investigate the effect of learning multimedia on students’ understanding of macroscopic, sub-microscopic, and symbolic levels in electrolyte and nonelectrolyte topic. The quasi-experimental with one group pre-test post-test design was used. Thirty-five students were experimental class and another thirty-five were control class. The instrument was used is three representation levels. The t-test was performed on average level of 95% to identify the significant difference between experimental class and control class. The results show that the normalized gain average of experimental class is 0.75 (high) and the normalized gain average of control class is 0.45 (moderate). There is significant difference in students’ understanding in sub-microscopic and symbolic levels and there is not significant difference of students’ understanding in macroscopic level between experimental class and control class. The normalized gain of students’ understanding of macroscopic, sub-microscopic and symbolic in experimental class are 0.6 (moderate), 0.75 (high), and 0.64 (moderate), while the normalized gain of students’ understanding of macroscopic, sub-microscopic and symbolic in control class are 0.49 (moderate), 0.39 (high), and 0.3 (moderate). Therefore, it can be concluded that learning multimedia can help in improving students’ understanding especially in sub-microscopic and symbolic levels.

Metal centre effects on HNO binding in porphyrins and the electronic origin: metal's electronic configuration, position in the periodic table, and oxidation state.

PubMed

Yang, Liu; Fang, Weihai; Zhang, Yong

2012-04-21

HNO binds to many different metals in organometallic and bioinorganic chemistry. To help understand experimentally observed metal centre effects, a quantum chemical investigation was performed, revealing clear general binding trends with respect to metal centre characteristics and the electronic origin for the first time. This journal is © The Royal Society of Chemistry 2012

Changes in baseflow conditions over a 42 year observation period for the Little River Experimental Watershed in South Georgia

Treesearch

David D. Bosch; Randall G. Williams; Timothy C. Strickland; Jeff G. Arnold; Peter G. Allen

2016-01-01

Hydrology is the driving force of sediment, nutrient, and pesticide movement. Separation of streamflow hydrographs into rapid surface runoff and baseflow can vastly improve our understanding of chemical transport. In addition, characterizing these two components of streamflow can also greatly improve overall watershed hydrologic budgets which are critical for accurate...

Dielectric and structural characterisation of chalcogenide glasses via terahertz time-domain spectroscopy

NASA Astrophysics Data System (ADS)

Ravagli, A.; Naftaly, M.; Craig, C.; Weatherby, E.; Hewak, D. W.

2017-07-01

Terahertz time-domain spectroscopy (THz TDS) was used to investigate a series of chalcogenide glasses. In particular, the dielectric properties at terahertz frequencies were determined and correlated with the glass composition. The experimental results showed a strong relationship between the dielectric properties and the polarizability of the glasses studied. A new explanation based on the coordination number of the metallic cations was proposed to understand these observations.

Thermal bending of liquid sheets and jets

NASA Astrophysics Data System (ADS)

Brenner, Michael P.; Paruchuri, Srinivas

2003-11-01

We present an analytical model for the bending of liquid jets and sheets from temperature gradients, as recently observed by Chwalek et al. [Phys. Fluids 14, L37 (2002)]. The bending arises from a local couple caused by Marangoni forces. The dependence of the bending angle on experimental parameters is presented, in qualitative agreement with reported experiments. The methodology gives a simple framework for understanding the mechanisms for jet and sheet bending.

Structure and dynamics of proflavine association around DNA.

PubMed

Sasikala, Wilbee D; Mukherjee, Arnab

2016-04-21

Proflavine is a small molecule that intercalates into DNA and, thereby, acts as an anticancer agent. Intercalation of proflavine is shown to be a two-step process in which the first step is believed to be the formation of a pre-intercalative outside bound state. Experimental studies so far have been unable to capture the nature of the outside bound state. However, the sub-millisecond timescale observed in fluorescence kinetic experiments is often attributed to the binding of proflavine outside of DNA. Here, we have performed molecular dynamics simulations with multiple proflavine molecules to study the structure and dynamics of the formation of the outside bound state of DNA at different ion concentrations. We observed that the timescale of the outside bound state formation is, at least, five orders of magnitude faster (in nanoseconds) than the experimentally reported timescale (sub-milliseconds) attributed to binding outside DNA. Moreover, we also observed the stacked arrangement of proflavine all around DNA, which is different from the experimentally predicted stacking arrangement perpendicular to the helical axis of DNA in the close vicinity of the phosphate groups. This study, therefore, provides insight into the molecular structure and dynamics of the pre-intercalative outside bound state and will help in understanding the overall intercalation mechanism.

A Claw is Like My Hand: Comparison Supports Goal Analysis in Infants

PubMed Central

Gerson, Sarah A.; Woodward, Amanda L.

2012-01-01

Understanding the intentional relations in others' actions is critical to human social life. Origins of this knowledge exist in the first year and are a function of both acting as an intentional agent and observing movement cues in actions. We explore a new mechanism we believe plays an important role in infants' understanding of new actions: comparison. We examine how the opportunity to compare a familiar action with a novel, tool use action helps 7- and 10-month-old infants extract and imitate the goal of a tool use action. Infants given the chance to compare their own reach for a toy with an experimenter's reach using a claw later imitated the goal of an experimenter's tool use action. Infants who engaged with the claw, were familiarized with the claw's causal properties, or learned the associations between claw and toys (but did not align their reaches with the claw's) did not imitate. Further, active participation in the familiar action to be compared was more beneficial than observing a familiar and novel action aligned for 10-month-olds. Infants' ability to extract the goal-relation of a novel action through comparison with a familiar action could have a broad impact on the development of action knowledge and social learning more generally. PMID:22099543

Understanding misfit strain releasing mechanisms via molecular dynamics simulations of CdTe growth on {112}zinc-blende CdS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Xiaowang; Chavez, Jose J.; Almeida, Sergio F.

Molecular dynamics simulations have been used to analyse microstructures of CdTe films grown on {112} surfaces of zinc-blende CdS. Interestingly, CdTe films grow in <331> orientations as opposed to <112> epitaxial orientations. At the CdTe-{331}/CdS-{112} interface, however, there exists an axis that is parallel to the <110> orientation of both CdS and CdTe. It is the direction orthogonal to this <110> that becomes different, being <116> for CdTe and <111> for CdS, respectively. Missing CdTe-{110} planes are found along the <110> axis, suggesting that the misfit strain is released by the conventional misfit dislocation mechanism along this axis. In themore » orthogonal axis, the misfit strain is found to be more effectively released by the new grain orientation mechanism. Our finding is supported by literature experimental observations of the change of growth direction when Cd 0.96Zn 0.04Te films are deposited on GaAs. Lastly the analyses of energetics clearly demonstrate the cause for the formation of the new orientation, and the insights gained from our studies can help understand the grain structures experimentally observed in lattice mismatched systems.« less

First-principles modeling of resonant Raman scattering for the understanding of phonons and electrons in nanomaterials

NASA Astrophysics Data System (ADS)

Liang, Liangbo; Meunier, Vincent; Yan, Jia-An; Sumpter, Bobby

Raman spectroscopy is a popular tool that can probe both phonons and electrons of the materials. First-principles modeling is important in aiding the understanding of experimental data. Raman modeling is typically based on the classical Placzek approximation and limited to the non-resonant condition, and thus the laser energy dependence of Raman intensities could not be captured. Here we showed that resonant Raman scattering could be captured by upgrading the classical approach, i.e., by calculating the dynamic dielectric tensor at the laser energy instead of the commonly used static value at zero energy. Our method was successfully applied to recently synthesized atomically precise graphene nanoribbons, and revealed the photon-energy-dependent Raman intensity of the radial breathing like mode (RBLM), which explained experimental observations that RBLM can be only observed in certain laser energies. Additionally, we also explored anisotropic 2D material, ReS2, and found that the angle-resolved Raman polarization dependence of its Raman modes is sensitive to the laser energy, as confirmed by recent experiments. The intricate electron-phonon coupling could lead to no simple rule for using Raman polarization dependence to determine the crystalline orientation. LL is supported by Eugene P. Wigner Fellowship at Oak Ridge National Laboratory and CNMS (a DOE Office of Science User Facility).

Predicting the morphologies of γ' precipitates in cobalt-based superalloys

DOE PAGES

Jokisaari, Andrea M.; Naghavi, S. S.; Wolverton, C.; ...

2017-09-06

Cobalt-based alloys with γ/γ' microstructures have the potential to become the next generation of superalloys, but alloy compositions and processing steps must be optimized to improve coarsening, creep, and rafting behavior. While these behaviors are different than in nickel-based superalloys, alloy development can be accelerated by understanding the thermodynamic factors influencing microstructure evolution. In this work, we develop a phase field model informed by first-principles density functional theory and experimental data to predict the equilibrium shapes of Co-Al-W γ' precipitates. Three-dimensional simulations of single and multiple precipitates are performed to understand the effect of elastic and interfacial energy on coarsenedmore » and rafted microstructures; the elastic energy is dependent on the elastic stiffnesses, misfit strain, precipitate size, applied stress, and precipitate spatial distribution. We observe characteristic microstructures dependent on the type of applied stress that have the same γ' morphology and orientation seen in experiments, indicating that the elastic stresses arising from coherent γ/γ' interfaces are important for morphological evolution during creep. Here, the results also indicate that the narrow γ channels between γ' precipitates are energetically favored, and provide an explanation for the experimentally observed directional coarsening that occurs without any applied stress.« less

A Computational Model Quantifies the Effect of Anatomical Variability on Velopharyngeal Function

PubMed Central

Inouye, Joshua M.; Perry, Jamie L.; Lin, Kant Y.

2015-01-01

Purpose This study predicted the effects of velopharyngeal (VP) anatomical parameters on VP function to provide a greater understanding of speech mechanics and aid in the treatment of speech disorders. Method We created a computational model of the VP mechanism using dimensions obtained from magnetic resonance imaging measurements of 10 healthy adults. The model components included the levator veli palatini (LVP), the velum, and the posterior pharyngeal wall, and the simulations were based on material parameters from the literature. The outcome metrics were the VP closure force and LVP muscle activation required to achieve VP closure. Results Our average model compared favorably with experimental data from the literature. Simulations of 1,000 random anatomies reflected the large variability in closure forces observed experimentally. VP distance had the greatest effect on both outcome metrics when considering the observed anatomic variability. Other anatomical parameters were ranked by their predicted influences on the outcome metrics. Conclusions Our results support the implication that interventions for VP dysfunction that decrease anterior to posterior VP portal distance, increase velar length, and/or increase LVP cross-sectional area may be very effective. Future modeling studies will help to further our understanding of speech mechanics and optimize treatment of speech disorders. PMID:26049120

Bioavailability of soy isoflavones through placental/lactational transfer and soy food

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doerge, Daniel R., E-mail: daniel.doerge@fda.hhs.gov

2011-07-15

Isoflavones are non-nutritive components of soy responsible for estrogenic responses observed in vitro and in experimental animals. Possible beneficial effects (e.g., reduction of serum lipids, increased bone mineral density, relief of hot flashes and other menopausal symptoms, mammary and prostate cancer chemoprevention) in humans have been attributed to consumption of isoflavones but evidence for potential adverse effects (e.g., stimulation of estrogen-dependent mammary tumors and aberrant perinatal development) has also been reported in experimental animal models. Bioavailability from appropriate food matrices and exposure during different life stages are both critical determinants of isoflavone effects. For these reasons, it is important tomore » compare isoflavone bioavailability in adults to that in fetal and neonatal animals for a more complete understanding of potential susceptibility issues. Studies of the major soy isoflavone genistein were conducted in pregnant and lactating Sprague-Dawley rats to quantify placental and lactational transfer to plasma and brain to understand better biological effects observed in multigenerational studies. In addition, studies were conducted with genistein in adult Balb/c mice to define absolute bioavailability from both gavage and soy protein isolate (SPI)-containing food. The information derived from these studies makes it possible to predict internal exposures of children to genistein from soy infant formula, which is manufactured using SPI.« less

Understanding misfit strain releasing mechanisms via molecular dynamics simulations of CdTe growth on {112}zinc-blende CdS

DOE PAGES

Zhou, Xiaowang; Chavez, Jose J.; Almeida, Sergio F.; ...

2016-07-25

Molecular dynamics simulations have been used to analyse microstructures of CdTe films grown on {112} surfaces of zinc-blende CdS. Interestingly, CdTe films grow in <331> orientations as opposed to <112> epitaxial orientations. At the CdTe-{331}/CdS-{112} interface, however, there exists an axis that is parallel to the <110> orientation of both CdS and CdTe. It is the direction orthogonal to this <110> that becomes different, being <116> for CdTe and <111> for CdS, respectively. Missing CdTe-{110} planes are found along the <110> axis, suggesting that the misfit strain is released by the conventional misfit dislocation mechanism along this axis. In themore » orthogonal axis, the misfit strain is found to be more effectively released by the new grain orientation mechanism. Our finding is supported by literature experimental observations of the change of growth direction when Cd 0.96Zn 0.04Te films are deposited on GaAs. Lastly the analyses of energetics clearly demonstrate the cause for the formation of the new orientation, and the insights gained from our studies can help understand the grain structures experimentally observed in lattice mismatched systems.« less

Experimental whole-lake increase of dissolved organic carbon concentration produces unexpected increase in crustacean zooplankton density

USGS Publications Warehouse

Kelly, Patrick T.; Craig, Nicola; Solomon, Christopher T.; Weidel, Brian C.; Zwart, Jacob A.; Jones, Stuart E.

2016-01-01

The observed pattern of lake browning, or increased terrestrial dissolved organic carbon (DOC) concentration, across the northern hemisphere has amplified the importance of understanding how consumer productivity varies with DOC concentration. Results from comparative studies suggest these increased DOC concentrations may reduce crustacean zooplankton productivity due to reductions in resource quality and volume of suitable habitat. Although these spatial comparisons provide an expectation for the response of zooplankton productivity as DOC concentration increases, we still have an incomplete understanding of how zooplankton respond to temporal increases in DOC concentration within a single system. As such, we used a whole-lake manipulation, in which DOC concentration was increased from 8 to 11 mg L−1 in one basin of a manipulated lake, to test the hypothesis that crustacean zooplankton production should subsequently decrease. In contrast to the spatially derived expectation of sharp DOC-mediated decline, we observed a small increase in zooplankton densities in response to our experimental increase in DOC concentration of the treatment basin. This was due to significant increases in gross primary production and resource quality (lower seston carbon-to-phosphorus ratio; C:P). These results demonstrate that temporal changes in lake characteristics due to increased DOC may impact zooplankton in ways that differ from those observed in spatial surveys. We also identified significant interannual variability across our study region, which highlights potential difficulty in detecting temporal responses of organism abundances to gradual environmental change (e.g., browning).

Measurement of the Transverse Single-Spin Asymmetry in p↑+p →W±/Z0 at RHIC

NASA Astrophysics Data System (ADS)

Adamczyk, L.; Adkins, J. K.; Agakishiev, G.; Aggarwal, M. M.; Ahammed, Z.; Alekseev, I.; Aparin, A.; Arkhipkin, D.; Aschenauer, E. C.; Attri, A.; Averichev, G. S.; Bai, X.; Bairathi, V.; Banerjee, A.; Bellwied, R.; Bhasin, A.; Bhati, A. K.; Bhattarai, P.; Bielcik, J.; Bielcikova, J.; Bland, L. C.; Bordyuzhin, I. G.; Bouchet, J.; Brandenburg, J. D.; Brandin, A. V.; Bunzarov, I.; Butterworth, J.; Caines, H.; Calderón de la Barca Sánchez, M.; Campbell, J. M.; Cebra, D.; Chakaberia, I.; Chaloupka, P.; Chang, Z.; Chattopadhyay, S.; Chen, X.; Chen, J. H.; Cheng, J.; Cherney, M.; Christie, W.; Contin, G.; Crawford, H. J.; Das, S.; De Silva, L. C.; Debbe, R. R.; Dedovich, T. G.; Deng, J.; Derevschikov, A. A.; di Ruzza, B.; Didenko, L.; Dilks, C.; Dong, X.; Drachenberg, J. L.; Draper, J. E.; Du, C. M.; Dunkelberger, L. E.; Dunlop, J. C.; Efimov, L. G.; Engelage, J.; Eppley, G.; Esha, R.; Evdokimov, O.; Eyser, O.; Fatemi, R.; Fazio, S.; Federic, P.; Fedorisin, J.; Feng, Z.; Filip, P.; Fisyak, Y.; Flores, C. E.; Fulek, L.; Gagliardi, C. A.; Garand, D.; Geurts, F.; Gibson, A.; Girard, M.; Greiner, L.; Grosnick, D.; Gunarathne, D. S.; Guo, Y.; Gupta, A.; Gupta, S.; Guryn, W.; Hamad, A.; Hamed, A.; Haque, R.; Harris, J. W.; He, L.; Heppelmann, S.; Heppelmann, S.; Hirsch, A.; Hoffmann, G. W.; Hofman, D. J.; Horvat, S.; Huang, X.; Huang, H. Z.; Huang, B.; Huang, T.; Huck, P.; Humanic, T. J.; Igo, G.; Jacobs, W. W.; Jang, H.; Jentsch, A.; Jia, J.; Jiang, K.; Judd, E. G.; Kabana, S.; Kalinkin, D.; Kang, K.; Kauder, K.; Ke, H. W.; Keane, D.; Kechechyan, A.; Khan, Z. H.; Kikoła, D. P.; Kisel, I.; Kisiel, A.; Kochenda, L.; Koetke, D. D.; Kosarzewski, L. K.; Kraishan, A. F.; Kravtsov, P.; Krueger, K.; Kumar, L.; Lamont, M. A. C.; Landgraf, J. M.; Landry, K. D.; Lauret, J.; Lebedev, A.; Lednicky, R.; Lee, J. H.; Li, C.; Li, Y.; Li, W.; Li, X.; Li, X.; Lin, T.; Lisa, M. A.; Liu, F.; Ljubicic, T.; Llope, W. J.; Lomnitz, M.; Longacre, R. S.; Luo, X.; Ma, R.; Ma, L.; Ma, G. L.; Ma, Y. G.; Magdy, N.; Majka, R.; Manion, A.; Margetis, S.; Markert, C.; McDonald, D.; Meehan, K.; Mei, J. C.; Minaev, N. G.; Mioduszewski, S.; Mishra, D.; Mohanty, B.; Mondal, M. M.; Morozov, D. A.; Mustafa, M. K.; Nandi, B. K.; Nasim, Md.; Nayak, T. K.; Nigmatkulov, G.; Niida, T.; Nogach, L. V.; Noh, S. Y.; Novak, J.; Nurushev, S. B.; Odyniec, G.; Ogawa, A.; Oh, K.; Okorokov, V. A.; Olvitt, D.; Page, B. S.; Pak, R.; Pan, Y. X.; Pandit, Y.; Panebratsev, Y.; Pawlik, B.; Pei, H.; Perkins, C.; Pile, P.; Pluta, J.; Poniatowska, K.; Porter, J.; Posik, M.; Poskanzer, A. M.; Pruthi, N. K.; Putschke, J.; Qiu, H.; Quintero, A.; Ramachandran, S.; Raniwala, R.; Raniwala, S.; Ray, R. L.; Ritter, H. G.; Roberts, J. B.; Rogachevskiy, O. V.; Romero, J. L.; Roy, A.; Ruan, L.; Rusnak, J.; Rusnakova, O.; Sahoo, N. R.; Sahu, P. K.; Sakrejda, I.; Salur, S.; Sandweiss, J.; Sarkar, A.; Schambach, J.; Scharenberg, R. P.; Schmah, A. M.; Schmidke, W. B.; Schmitz, N.; Seger, J.; Seyboth, P.; Shah, N.; Shahaliev, E.; Shanmuganathan, P. V.; Shao, M.; Sharma, M. K.; Sharma, B.; Shen, W. Q.; Shi, Z.; Shi, S. S.; Shou, Q. Y.; Sichtermann, E. P.; Sikora, R.; Simko, M.; Singha, S.; Skoby, M. J.; Smirnov, D.; Smirnov, N.; Solyst, W.; Song, L.; Sorensen, P.; Spinka, H. M.; Srivastava, B.; Stanislaus, T. D. S.; Stepanov, M.; Stock, R.; Strikhanov, M.; Stringfellow, B.; Sumbera, M.; Summa, B.; Sun, Y.; Sun, Z.; Sun, X. M.; Surrow, B.; Svirida, D. N.; Tang, A. H.; Tang, Z.; Tarnowsky, T.; Tawfik, A.; Thäder, J.; Thomas, J. H.; Timmins, A. R.; Tlusty, D.; Todoroki, T.; Tokarev, M.; Trentalange, S.; Tribble, R. E.; Tribedy, P.; Tripathy, S. K.; Tsai, O. D.; Ullrich, T.; Underwood, D. G.; Upsal, I.; Van Buren, G.; van Nieuwenhuizen, G.; Vandenbroucke, M.; Varma, R.; Vasiliev, A. N.; Vertesi, R.; Videbæk, F.; Vokal, S.; Voloshin, S. A.; Vossen, A.; Wang, J. S.; Wang, Y.; Wang, F.; Wang, Y.; Wang, H.; Wang, G.; Webb, J. C.; Webb, G.; Wen, L.; Westfall, G. D.; Wieman, H.; Wissink, S. W.; Witt, R.; Wu, Y.; Xiao, Z. G.; Xie, X.; Xie, W.; Xin, K.; Xu, N.; Xu, Y. F.; Xu, Z.; Xu, Q. H.; Xu, J.; Xu, H.; Yang, Q.; Yang, Y.; Yang, S.; Yang, Y.; Yang, C.; Yang, Y.; Ye, Z.; Ye, Z.; Yepes, P.; Yi, L.; Yip, K.; Yoo, I.-K.; Yu, N.; Zbroszczyk, H.; Zha, W.; Zhang, S.; Zhang, Z.; Zhang, S.; Zhang, J. B.; Zhang, Y.; Zhang, J.; Zhang, J.; Zhang, X. P.; Zhao, J.; Zhong, C.; Zhou, L.; Zhu, X.; Zoulkarneeva, Y.; Zyzak, M.; STAR Collaboration

2016-04-01

We present the measurement of the transverse single-spin asymmetry of weak boson production in transversely polarized proton-proton collisions at √{s }=500 GeV by the STAR experiment at RHIC. The measured observable is sensitive to the Sivers function, one of the transverse-momentum-dependent parton distribution functions, which is predicted to have the opposite sign in proton-proton collisions from that observed in deep inelastic lepton-proton scattering. These data provide the first experimental investigation of the nonuniversality of the Sivers function, fundamental to our understanding of QCD.

Single-photon-driven high-order sideband transitions in an ultrastrongly coupled circuit-quantum-electrodynamics system

NASA Astrophysics Data System (ADS)

Chen, Zhen; Wang, Yimin; Li, Tiefu; Tian, Lin; Qiu, Yueyin; Inomata, Kunihiro; Yoshihara, Fumiki; Han, Siyuan; Nori, Franco; Tsai, J. S.; You, J. Q.

2017-07-01

We report the experimental observation of high-order sideband transitions at the single-photon level in a quantum circuit system of a flux qubit ultrastrongly coupled to a coplanar waveguide resonator. With the coupling strength reaching 10% of the resonator's fundamental frequency, we obtain clear signatures of higher order red-sideband and first-order blue-sideband transitions, which are mainly due to the ultrastrong Rabi coupling. Our observation advances the understanding of ultrastrongly coupled systems and paves the way to study high-order processes in the quantum Rabi model at the single-photon level.

Multimodal Imaging of Human Brain Activity: Rational, Biophysical Aspects and Modes of Integration

PubMed Central

Blinowska, Katarzyna; Müller-Putz, Gernot; Kaiser, Vera; Astolfi, Laura; Vanderperren, Katrien; Van Huffel, Sabine; Lemieux, Louis

2009-01-01

Until relatively recently the vast majority of imaging and electrophysiological studies of human brain activity have relied on single-modality measurements usually correlated with readily observable or experimentally modified behavioural or brain state patterns. Multi-modal imaging is the concept of bringing together observations or measurements from different instruments. We discuss the aims of multi-modal imaging and the ways in which it can be accomplished using representative applications. Given the importance of haemodynamic and electrophysiological signals in current multi-modal imaging applications, we also review some of the basic physiology relevant to understanding their relationship. PMID:19547657

Bent dendrite growth in undercooled Fe-B alloy melts

NASA Astrophysics Data System (ADS)

Karrasch, C.; Volkmann, T.; Valloton, J.; Kolbe, M.; Herlach, DM

2016-03-01

Dendritic growth is the main solidification mode in alloy casting. In order to control dendrite growth for materials design from the melt it is important to fully understand the influence of process conditions. This study stands as an experimental note observing bent dendrite growth in Fe-B alloys and suggesting possible explanations as induced by fluid flow, thermal, and concentrational diffusion or impurities. Electromagnetic levitation technique (EML) is used for containerless processing of undercooled melts under 1g and reduced gravity conditions in parabolic flight. Further investigations are needed to find a suitable explanation for the observed bent dendrite growth behaviour.

Benjamin Franklin and medicine.

PubMed

Hirschmann, J V

2005-12-06

Benjamin Franklin, called Dr. Franklin after receiving an honorary degree in 1759 for his contributions to understanding electricity, was not formally trained as a physician. Nevertheless, he had numerous interests in medicine, including experimentation, shrewd observations about health and disease in himself and others, civic activities, and inventions of medical devices. These achievements show his capacity for detailed, perceptive insights; his fastidiousness in recording his observations; and his thoughtful analyses of scientific phenomena and human conduct. In medicine, perhaps uniquely in his life, his major interests intersected: scientific pursuits, civic activities, amused scrutiny of human behavior, and the desire to improve the lot of his fellow man.

Investigation of isotope effects of ozone as a function of temperature

NASA Astrophysics Data System (ADS)

McMahon, Daniel J.

Ozone is an important oxidizer in the atmosphere and plays a crucial role as a cleanser, removing various compounds such NOx and SOx. It also is intriguing to those that study stable isotopes as it has a unique signature found in no other oxygen containing molecule. Ozone is observed to fractionate mass independently, which means it does not follow the typical delta 17O /delta18O = 0.52 ratio expected for molecules enriched with 17O and 18O. The magnitude of ozone's mass independent enrichment has been studied in laboratory experiments and atmospheric observations but its explanation is still incomplete. Symmetry of the isotopically substituted ozone is postulated to be the source of mass independent enrichment and this thesis will build on that explanation to examine the magnitude of isotopic enrichment as a function of temperature. Understanding of the kinetics of ozone formation has come a long way from early predictions of enrichments >200‰ However, while our ability to accurately model ozone's bulk isotopic enrichment has improved to include separate rates for the formation of asymmetric and symmetric ozone, rate experiments are sparse for 17O and of low precision. To improve our understanding of ozone's enrichment, this study presents a temperature dependent enrichment experiment and series of models to predict asymmetric mass independent fractionation. This also served to examine ozone's enrichment in the troposphere by using an open flow experimental setup which is in contrast to previous works examining ozone enrichment in a closed system. Our experimental observations show that under tropospheric conditions, ozone should have delta17O ≈ 75‰, delta18O ≈ 80‰, and delta 17O ≈ 33‰. The models were able to match experimental values, often within 1‰, and with minimal assumptions, predict asymmetric ozone to have delta17O=47.5‰. This value is important as ozone transfers its terminal atom to species it oxidizes and will be the starting point to using ozone as a tracer in atmospheric reactions. Modeling improves our understanding of ozone's enrichments but these predictions must be validated by atmospheric observations. Previous tropospheric ozone sampling studies produced data of low precision but still showed relatively good agreement with our laboratory observations. In order to obtain better isotopic data a proxy method for sampling ozone's terminal atom is needed. Reaction with nitrite in solution is promising as the reaction is rapid and efficient. However we were unable to obtain tropospheric ozone observations as nitrite processing methods could not be perfected to remove nitrate blank concentrations. We do present the merits of using nitrite to react with atmospheric ozone and the suggest purification steps that may allow this method to be successful in the future.

From experimental zoology to big data: Observation and integration in the study of animal development.

PubMed

Bolker, Jessica; Brauckmann, Sabine

2015-06-01

The founding of the Journal of Experimental Zoology in 1904 was inspired by a widespread turn toward experimental biology in the 19th century. The founding editors sought to promote experimental, laboratory-based approaches, particularly in developmental biology. This agenda raised key practical and epistemological questions about how and where to study development: Does the environment matter? How do we know that a cell or embryo isolated to facilitate observation reveals normal developmental processes? How can we integrate descriptive and experimental data? R.G. Harrison, the journal's first editor, grappled with these questions in justifying his use of cell culture to study neural patterning. Others confronted them in different contexts: for example, F.B. Sumner insisted on the primacy of fieldwork in his studies on adaptation, but also performed breeding experiments using wild-collected animals. The work of Harrison, Sumner, and other early contributors exemplified both the power of new techniques, and the meticulous explanation of practice and epistemology that was marshaled to promote experimental approaches. A century later, experimentation is widely viewed as the standard way to study development; yet at the same time, cutting-edge "big data" projects are essentially descriptive, closer to natural history than to the approaches championed by Harrison et al. Thus, the original questions about how and where we can best learn about development are still with us. Examining their history can inform current efforts to incorporate data from experiment and description, lab and field, and a broad range of organisms and disciplines, into an integrated understanding of animal development. © 2015 Wiley Periodicals, Inc.

Captured by motion: dance, action understanding, and social cognition.

PubMed

Sevdalis, Vassilis; Keller, Peter E

2011-11-01

In this review article, we summarize the main findings from empirical studies that used dance-related forms of rhythmical full body movement as a research tool for investigating action understanding and social cognition. This work has proven to be informative about behavioral and brain mechanisms that mediate links between perceptual and motor processes invoked during the observation and execution of spatially-temporally coordinated action and interpersonal interaction. The review focuses specifically on processes related to (a) motor experience and expertise, (b) learning and memory, (c) action, intention, and emotion understanding, and (d) audio-visual synchrony and timing. Consideration is given to the relationship between research on dance and more general embodied cognition accounts of action understanding and social cognition. Finally, open questions and issues concerning experimental design are discussed with a view to stimulating future research on social-cognitive aspects of dance. Copyright © 2011 Elsevier Inc. All rights reserved.

Understanding Biological Regulation Through Synthetic Biology.

PubMed

Bashor, Caleb J; Collins, James J

2018-05-20

Engineering synthetic gene regulatory circuits proceeds through iterative cycles of design, building, and testing. Initial circuit designs must rely on often-incomplete models of regulation established by fields of reductive inquiry-biochemistry and molecular and systems biology. As differences in designed and experimentally observed circuit behavior are inevitably encountered, investigated, and resolved, each turn of the engineering cycle can force a resynthesis in understanding of natural network function. Here, we outline research that uses the process of gene circuit engineering to advance biological discovery. Synthetic gene circuit engineering research has not only refined our understanding of cellular regulation but furnished biologists with a toolkit that can be directed at natural systems to exact precision manipulation of network structure. As we discuss, using circuit engineering to predictively reorganize, rewire, and reconstruct cellular regulation serves as the ultimate means of testing and understanding how cellular phenotype emerges from systems-level network function.

The genetics of geometry

PubMed Central

Coen, Enrico; Rolland-Lagan, Anne-Gaëlle; Matthews, Mark; Bangham, J. Andrew; Prusinkiewicz, Przemyslaw

2004-01-01

Although much progress has been made in understanding how gene expression patterns are established during development, much less is known about how these patterns are related to the growth of biological shapes. Here we describe conceptual and experimental approaches to bridging this gap, with particular reference to plant development where lack of cell movement simplifies matters. Growth and shape change in plants can be fully described with four types of regional parameter: growth rate, anisotropy, direction, and rotation. A key requirement is to understand how these parameters both influence and respond to the action of genes. This can be addressed by using mechanistic models that capture interactions among three components: regional identities, regionalizing morphogens, and polarizing morphogens. By incorporating these interactions within a growing framework, it is possible to generate shape changes and associated gene expression patterns according to particular hypotheses. The results can be compared with experimental observations of growth of normal and mutant forms, allowing further hypotheses and experiments to be formulated. We illustrate these principles with a study of snapdragon petal growth. PMID:14960734

Enhancement of Exciton Emission from Multilayer MoS2 at High Temperatures: Intervalley Transfer versus Interlayer Decoupling.

PubMed

Li, Yuanzheng; Xu, Haiyang; Liu, Weizhen; Yang, Guochun; Shi, Jia; Liu, Zheng; Liu, Xinfeng; Wang, Zhongqiang; Tang, Qingxin; Liu, Yichun

2017-05-01

It is very important to obtain a deeper understand of the carrier dynamics for indirect-bandgap multilayer MoS 2 and to make further improvements to the luminescence efficiency. Herein, an anomalous luminescence behavior of multilayer MoS 2 is reported, and its exciton emission is significantly enhanced at high temperatures. Temperature-dependent Raman studies and electronic structure calculations reveal that this experimental observation cannot be fully explained by a common mechanism of thermal-expansion-induced interlayer decoupling. Instead, a new model involving the intervalley transfer of thermally activated carriers from Λ/Γ point to K point is proposed to understand the high-temperature luminescence enhancement of multilayer MoS 2 . Steady-state and transient-state fluorescence measurements show that both the lifetime and intensity of the exciton emission increase relatively to increasing temperature. These two experimental evidences, as well as a calculation of carrier population, provide strong support for the proposed model. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

From patterns to causal understanding: Structural equation modeling (SEM) in soil ecology

USGS Publications Warehouse

Eisenhauer, Nico; Powell, Jeff R; Grace, James B.; Bowker, Matthew A.

2015-01-01

In this perspectives paper we highlight a heretofore underused statistical method in soil ecological research, structural equation modeling (SEM). SEM is commonly used in the general ecological literature to develop causal understanding from observational data, but has been more slowly adopted by soil ecologists. We provide some basic information on the many advantages and possibilities associated with using SEM and provide some examples of how SEM can be used by soil ecologists to shift focus from describing patterns to developing causal understanding and inspiring new types of experimental tests. SEM is a promising tool to aid the growth of soil ecology as a discipline, particularly by supporting research that is increasingly hypothesis-driven and interdisciplinary, thus shining light into the black box of interactions belowground.

Procedures for determination of detection limits: application to high-performance liquid chromatography analysis of fat-soluble vitamins in human serum.

PubMed

Browne, Richard W; Whitcomb, Brian W

2010-07-01

Problems in the analysis of laboratory data commonly arise in epidemiologic studies in which biomarkers subject to lower detection thresholds are used. Various thresholds exist including limit of detection (LOD), limit of quantification (LOQ), and limit of blank (LOB). Choosing appropriate strategies for dealing with data affected by such limits relies on proper understanding of the nature of the detection limit and its determination. In this paper, we demonstrate experimental and statistical procedures generally used for estimating different detection limits according to standard procedures in the context of analysis of fat-soluble vitamins and micronutrients in human serum. Fat-soluble vitamins and micronutrients were analyzed by high-performance liquid chromatography with diode array detection. A simulated serum matrix blank was repeatedly analyzed for determination of LOB parametrically by using the observed blank distribution as well as nonparametrically by using ranks. The LOD was determined by combining information regarding the LOB with data from repeated analysis of standard reference materials (SRMs), diluted to low levels; from LOB to 2-3 times LOB. The LOQ was determined experimentally by plotting the observed relative standard deviation (RSD) of SRM replicates compared with the concentration, where the LOQ is the concentration at an RSD of 20%. Experimental approaches and example statistical procedures are given for determination of LOB, LOD, and LOQ. These quantities are reported for each measured analyte. For many analyses, there is considerable information available below the LOQ. Epidemiologic studies must understand the nature of these detection limits and how they have been estimated for appropriate treatment of affected data.

Between a rock and a hot place: the core-mantle boundary.

PubMed

Wookey, James; Dobson, David P

2008-12-28

The boundary between the rocky mantle and iron core, almost 2900 km below the surface, is physically the most significant in the Earth's interior. It may be the terminus for subducted surface material, the source of mantle plumes and a control on the Earth's magnetic field. Its properties also have profound significance for the thermochemical and dynamic evolution of the solid Earth. Evidence from seismology shows that D'' (the lowermost few hundred kilometres of the mantle) has a variety of anomalous features. Understanding the origin of these observations requires an understanding of the elastic and deformation properties of the deep Earth minerals. Core-mantle boundary pressures and temperatures are achievable in the laboratory using diamond anvil cell (DAC) apparatus. Such experiments have led to the recent discovery of a new phase, 'post-perovskite', which may explain many hitherto poorly understood properties of D''. Experimental work is also done using analogue minerals at lower pressures and temperatures; these circumvent some of the limits imposed by the small sample size allowed by the DAC. A considerable contribution also comes from theoretical methods that provide a wealth of otherwise unavailable information, as well as verification and refinement of experimental results. The future of the study of the lowermost mantle will involve the linking of the ever-improving seismic observations with predictions of material properties from theoretical and experimental mineral physics in a quantitative fashion, including simulations of the dynamics of the deep Earth. This has the potential to dispel much of the mystery that still surrounds this remote but important region.

Deterministic analysis of processes at corroding metal surfaces and the study of electrochemical noise in these systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Latanision, R.M.

1990-12-01

Electrochemical corrosion is pervasive in virtually all engineering systems and in virtually all industrial circumstances. Although engineers now understand how to design systems to minimize corrosion in many instances, many fundamental questions remain poorly understood and, therefore, the development of corrosion control strategies is based more on empiricism than on a deep understanding of the processes by which metals corrode in electrolytes. Fluctuations in potential, or current, in electrochemical systems have been observed for many years. To date, all investigations of this phenomenon have utilized non-deterministic analyses. In this work it is proposed to study electrochemical noise from a deterministicmore » viewpoint by comparison of experimental parameters, such as first and second order moments (non-deterministic), with computer simulation of corrosion at metal surfaces. In this way it is proposed to analyze the origins of these fluctuations and to elucidate the relationship between these fluctuations and kinetic parameters associated with metal dissolution and cathodic reduction reactions. This research program addresses in essence two areas of interest: (a) computer modeling of corrosion processes in order to study the electrochemical processes on an atomistic scale, and (b) experimental investigations of fluctuations in electrochemical systems and correlation of experimental results with computer modeling. In effect, the noise generated by mathematical modeling will be analyzed and compared to experimental noise in electrochemical systems. 1 fig.« less

The Dynamics of the Stapedial Acoustic Reflex.

NASA Astrophysics Data System (ADS)

Moss, Sherrin Mary

Available from UMI in association with The British Library. This thesis aims to separate the neural and muscular components of the stapedial acoustic reflex, both anatomically and physiologically. It aims to present an hypothesis to account for the differences between ipsilateral and contralateral reflex characteristics which have so far been unexplained, and achieve a greater understanding of the mechanisms underlying the reflex dynamics. A technique enabling faithful reproduction of the time course of the reflex is used throughout the experimental work. The technique measures tympanic membrane displacement as a result of reflex stapedius muscle contraction. The recorded response can be directly related to the mechanics of the middle ear and stapedius muscle contraction. Some development of the technique is undertaken by the author. A model of the reflex neural arc and stapedius muscle dynamics is evolved that is based upon a second order system. The model is unique in that it includes a latency in the ipsilateral negative feedback loop. Oscillations commonly observed on reflex responses are seen to be produced because of the inclusion of a latency in the feedback loop. The model demonstrates and explains the complex relationships between neural and muscle dynamic parameters observed in the experimental work. This more comprehensive understanding of the interaction between the stapedius dynamics and the neural arc of the reflex would not usually have been possible using human subjects, coupled with a non-invasive measurement technique. Evidence from the experimental work revealed the ipsilateral reflex to have, on average, a 5 dB lower threshold than the contralateral reflex. The oscillatory charcteristics, and the steady state response, of the contralateral reflex are also seen to be significantly different from those of the ipsilateral reflex. An hypothesis to account for the experimental observations is proposed. It is propounded that chemical neurotransmitters, and their effect upon the contralateral reflex arc from the site of the superior olivary complex to the motoneurones innervating the stapedius, account for the difference between the contralateral and ipsilateral reflex thresholds and dynamic characteristics. In the past two years the measurement technique used for the experimental work has developed from an audiological to a neurological diagnostic tool. This has enabled the results from the study to be applied in the field for valuable biomechanical and neurological explanations of the reflex response. (Abstract shortened by UMI.).

Studies of nonlinear femtosecond pulse propagation in bulk materials

NASA Astrophysics Data System (ADS)

Eaton, Hilary Kaye

2000-10-01

Femtosecond pulse lasers are finding widespread application in a variety of fields including medical research, optical switching and communications, plasma formation, high harmonic generation, and wavepacket formation and control. As the number of applications for femtosecond pulses increases, so does the need to fully understand the linear and nonlinear processes involved in propagating these pulses through materials under various conditions. Recent advances in pulse measurement techniques, such as frequency-resolved optical gating (FROG), allow measurement of the full electric field of the pulse and have made detailed investigations of short- pulse propagation effects feasible. In this thesis, I present detailed experimental studies of my work involving nonlinear propagation of femtosecond pulses in bulk media. Studies of plane-wave propagation in fused silica extend the SHG form of FROG from a simple pulse diagnostic to a useful method of interrogating the nonlinear response of a material. Studies of nonlinear propagation are also performed in a regime where temporal pulse splitting occurs. Experimental results are compared with a three- dimensional nonlinear Schrödinger equation. This comparison fuels the development of a more complete model for pulse splitting. Experiments are also performed at peak input powers above those at which pulse splitting is observed. At these higher intensities, a broadband continuum is generated. This work presents a detailed study of continuum behavior and power loss as well as the first near-field spatial- spectral measurements of the generated continuum light. Nonlinear plane-wave propagation of short pulses in liquids is also investigated, and a non-instantaneous nonlinearity with a surprisingly short response time of 10 fs is observed in methanol. Experiments in water confirm that this effect in methanol is indeed real. Possible explanations for the observed effect are discussed and several are experimentally rejected. This thesis applies FROG as a powerful tool for science and not just a useful pulse diagnostic technique. Studies of three-dimensional propagation provide an in-depth understanding of the processes involved in femtosecond pulse splitting. In addition, the experimental investigations of continuum generation and pulse propagation in liquids provide new insights into the possible processes involved and should provide a useful comparison for developing theories.

Functional group interactions with single wall carbon NT studied by ab-initio calculations

NASA Astrophysics Data System (ADS)

Cicero, Giancarlo

2005-03-01

With the goal of designing functionalized nanotube materials, recent AFM measurements have succeeded in determining the force between individual chemical groups an single-wall carbon nanotubes (SWCNT) [1]. In order to rationalize and understand these experimental results, we have performed Density Functional Theory calculations for a number of structural arrangements of model tips functionalized with the same groups as those used experimentally. Our calculations include full geometry optimization of the composite SWCNT/tip system as well as `pulling-out' simulations to compute interaction forces. We considered (14x0), semi- conducting tubes, and AFM tips where modeled by a SiH3CH2-X molecule, with X- representing -CN, -CH3, -NH2 or -CH2OCH2. As X is varied, computed forces reproduce the same trend as that observed experimentally when n-doped SWCNT are considered; significantly different trends are observed for neutral and p-doped tubes. We propose that the polar solvent present in the experimental setup may be responsible for the n-doping of the nanotube suggested by our calculations. This work was performed under the auspices of the U.S. Department of Energy by University of California Lawrence Livermore National Laboratory under contract No. W-7405-Eng-48. [1] M.C. LeMieux et al, preprint

Mixing behavior of a model cellulosic biomass slurry during settling and resuspension

DOE PAGES

Crawford, Nathan C.; Sprague, Michael A.; Stickel, Jonathan J.

2016-01-29

Thorough mixing during biochemical deconstruction of biomass is crucial for achieving maximum process yields and economic success. However, due to the complex morphology and surface chemistry of biomass particles, biomass mixing is challenging and currently it is not well understood. This study investigates the bulk rheology of negatively buoyant, non-Brownian α-cellulose particles during settling and resuspension. The torque signal of a vane mixer across two distinct experimental setups (vane-in-cup and vane-in-beaker) was used to understand how mixing conditions affect the distribution of biomass particles. During experimentation, a bifurcated torque response as a function of vane speed was observed, indicating thatmore » the slurry transitions from a “settling-dominant” regime to a “suspension-dominant” regime. The torque response of well-characterized fluids (i.e., DI water) were then used to empirically identify when sufficient mixing turbulence was established in each experimental setup. The predicted critical mixing speeds were in agreement with measured values, suggesting that secondary flows are required in order to keep the cellulose particles fully suspended. In addition, a simple scaling relationship was developed to model the entire torque signal of the slurry throughout settling and resuspension. Furthermore, qualitative and semi-quantitative agreement between the model and experimental results was observed.« less

Intermodulation in nonlinear SQUID metamaterials: Experiment and theory

NASA Astrophysics Data System (ADS)

Zhang, Daimeng; Trepanier, Melissa; Antonsen, Thomas; Ott, Edward; Anlage, Steven M.

2016-11-01

The response of nonlinear metamaterials and superconducting electronics to two-tone excitation is critical for understanding their use as low-noise amplifiers and tunable filters. A new setting for such studies is that of metamaterials made of radio frequency superconducting quantum interference devices (rf-SQUIDs). The two-tone response of self-resonant rf-SQUID meta-atoms and metamaterials is studied here via intermodulation (IM) measurement over a broad range of tone frequencies and tone powers. A sharp onset followed by a surprising strongly suppressed IM region near the resonance is observed. Using a two time scale analysis technique, we present an analytical theory that successfully explains our experimental observations. The theory predicts that the IM can be manipulated with tone power, center frequency, frequency difference between the two tones, and temperature. This quantitative understanding potentially allows for the design of rf-SQUID metamaterials with either very low or very high IM response.

The Many Faces of Mitochondrial Autophagy: Making Sense of Contrasting Observations in Recent Research

PubMed Central

May, Alexander I.; Devenish, Rodney J.; Prescott, Mark

2012-01-01

Research into the selective autophagic degradation of mitochondria—mitophagy—has intensified in recent years, yielding significant insights into the function, mechanism, and regulation of this process in the eukaryotic cell. However, while some molecular players in budding yeast, such as Atg32p, Uth1p, and Aup1p, have been identified, studies further interrogating the mechanistic and regulatory features of mitophagy have yielded inconsistent and sometimes conflicting results. In this review, we focus on the current understanding of mitophagy mechanism, induction, and regulation in yeast, and suggest that differences in experimental conditions used in the various studies of mitophagy may contribute to the observed discrepancies. Consideration and understanding of these differences may help place the mechanism and regulation of mitophagy in context, and further indicate the intricate role that this essential process plays in the life and death of eukaryotic cells. PMID:22550491

Principles of assembly reveal a periodic table of protein complexes.

PubMed

Ahnert, Sebastian E; Marsh, Joseph A; Hernández, Helena; Robinson, Carol V; Teichmann, Sarah A

2015-12-11

Structural insights into protein complexes have had a broad impact on our understanding of biological function and evolution. In this work, we sought a comprehensive understanding of the general principles underlying quaternary structure organization in protein complexes. We first examined the fundamental steps by which protein complexes can assemble, using experimental and structure-based characterization of assembly pathways. Most assembly transitions can be classified into three basic types, which can then be used to exhaustively enumerate a large set of possible quaternary structure topologies. These topologies, which include the vast majority of observed protein complex structures, enable a natural organization of protein complexes into a periodic table. On the basis of this table, we can accurately predict the expected frequencies of quaternary structure topologies, including those not yet observed. These results have important implications for quaternary structure prediction, modeling, and engineering. Copyright © 2015, American Association for the Advancement of Science.

Observing random walks of atoms in buffer gas through resonant light absorption

NASA Astrophysics Data System (ADS)

Aoki, Kenichiro; Mitsui, Takahisa

2016-07-01

Using resonant light absorption, random-walk motions of rubidium atoms in nitrogen buffer gas are observed directly. The transmitted light intensity through atomic vapor is measured, and its spectrum is obtained, down to orders of magnitude below the shot-noise level to detect fluctuations caused by atomic motions. To understand the measured spectra, the spectrum for atoms performing random walks in a Gaussian light beam is computed, and its analytical form is obtained. The spectrum has 1 /f2 (f is frequency) behavior at higher frequencies, crossing over to a different, but well-defined, behavior at lower frequencies. The properties of this theoretical spectrum agree excellently with the measured spectrum. This understanding also enables us to obtain the diffusion constant, the photon cross section of atoms in buffer gas, and the atomic number density from a single spectral measurement. We further discuss other possible applications of our experimental method and analysis.

Sulfur-induced structural motifs on copper and gold surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Walen, Holly

The interaction of sulfur with copper and gold surfaces plays a fundamental role in important phenomena that include coarsening of surface nanostructures, and self-assembly of alkanethiols. Here, we identify and analyze unique sulfur-induced structural motifs observed on the low-index surfaces of these two metals. We seek out these structures in an effort to better understand the fundamental interactions between these metals and sulfur that lends to the stability and favorability of metal-sulfur complexes vs. chemisorbed atomic sulfur. The experimental observations presented here—made under identical conditions—together with extensive DFT analyses, allow comparisons and insights into factors that favor the existence ofmore » metal-sulfur complexes, vs. chemisorbed atomic sulfur, on metal terraces. We believe this data will be instrumental in better understanding the complex phenomena occurring between the surfaces of coinage metals and sulfur.« less

A review of the irradiation evolution of dispersed oxide nanoparticles in the b.c.c. Fe-Cr system: Current understanding and future directions

NASA Astrophysics Data System (ADS)

Wharry, Janelle P.; Swenson, Matthew J.; Yano, Kayla H.

2017-04-01

Thus far, a number of studies have investigated the irradiation evolution of oxide nanoparticles in b.c.c. Fe-Cr based oxide dispersion strengthened (ODS) alloys. But given the inconsistent experimental conditions, results have been widely variable and inconclusive. Crystal structure and chemistry changes differ from experiment to experiment, and the total nanoparticle volume fraction has been observed to both increase and decrease. Furthermore, there has not yet been a comprehensive review of the archival literature. In this paper, we summarize the existing studies on nanoparticle irradiation evolution. We note significant observations with respect to oxide nanoparticle crystallinity, composition, size, and number density. We discuss four possible contributing mechanisms for nanoparticle evolution: ballistic dissolution, Ostwald ripening, irradiation-enhanced diffusion, and homogeneous nucleation. Finally, we propose future directions to achieve a more comprehensive understanding of irradiation effects on oxide nanoparticles in ODS alloys.

Genome Scale Modeling in Systems Biology: Algorithms and Resources

PubMed Central

Najafi, Ali; Bidkhori, Gholamreza; Bozorgmehr, Joseph H.; Koch, Ina; Masoudi-Nejad, Ali

2014-01-01

In recent years, in silico studies and trial simulations have complemented experimental procedures. A model is a description of a system, and a system is any collection of interrelated objects; an object, moreover, is some elemental unit upon which observations can be made but whose internal structure either does not exist or is ignored. Therefore, any network analysis approach is critical for successful quantitative modeling of biological systems. This review highlights some of most popular and important modeling algorithms, tools, and emerging standards for representing, simulating and analyzing cellular networks in five sections. Also, we try to show these concepts by means of simple example and proper images and graphs. Overall, systems biology aims for a holistic description and understanding of biological processes by an integration of analytical experimental approaches along with synthetic computational models. In fact, biological networks have been developed as a platform for integrating information from high to low-throughput experiments for the analysis of biological systems. We provide an overview of all processes used in modeling and simulating biological networks in such a way that they can become easily understandable for researchers with both biological and mathematical backgrounds. Consequently, given the complexity of generated experimental data and cellular networks, it is no surprise that researchers have turned to computer simulation and the development of more theory-based approaches to augment and assist in the development of a fully quantitative understanding of cellular dynamics. PMID:24822031

Two decades of progress in understanding and control of laser plasma instabilities in indirect drive inertial fusion

DOE PAGES

Montgomery, David S.

2016-04-14

Our understanding of laser-plasma instability (LPI) physics has improved dramatically over the past two decades through advancements in experimental techniques, diagnostics, and theoretical and modeling approaches. We have progressed from single-beam experiments—ns pulses with ~kJ energy incident on hundred-micron-scale target plasmas with ~keV electron temperatures—to ones involving nearly 2 MJ energy in 192 beams onto multi-mm-scale plasmas with temperatures ~4 keV. At the same time, we have also been able to use smaller-scale laser facilities to substantially improve our understanding of LPI physics and evaluate novel approaches to their control. These efforts have led to a change in paradigm formore » LPI research, ushering in an era of engineering LPI to accomplish specific objectives, from tuning capsule implosion symmetry to fixing nonlinear saturation of LPI processes at acceptable levels to enable the exploration of high energy density physics in novel plasma regimes. A tutorial is provided that reviews the progress in the field from the vantage of the foundational LPI experimental results. The pedagogical framework of the simplest models of LPI will be employed, but attention will also be paid to settings where more sophisticated models are needed to understand the observations. Prospects for the application of our improved understanding for inertial fusion (both indirect- and direct-drive) and other applications will also be discussed.« less

Using Entropy Maximization to Understand the Determinants of Structural Dynamics beyond Native Contact Topology

PubMed Central

Lezon, Timothy R.; Bahar, Ivet

2010-01-01

Comparison of elastic network model predictions with experimental data has provided important insights on the dominant role of the network of inter-residue contacts in defining the global dynamics of proteins. Most of these studies have focused on interpreting the mean-square fluctuations of residues, or deriving the most collective, or softest, modes of motions that are known to be insensitive to structural and energetic details. However, with increasing structural data, we are in a position to perform a more critical assessment of the structure-dynamics relations in proteins, and gain a deeper understanding of the major determinants of not only the mean-square fluctuations and lowest frequency modes, but the covariance or the cross-correlations between residue fluctuations and the shapes of higher modes. A systematic study of a large set of NMR-determined proteins is analyzed using a novel method based on entropy maximization to demonstrate that the next level of refinement in the elastic network model description of proteins ought to take into consideration properties such as contact order (or sequential separation between contacting residues) and the secondary structure types of the interacting residues, whereas the types of amino acids do not play a critical role. Most importantly, an optimal description of observed cross-correlations requires the inclusion of destabilizing, as opposed to exclusively stabilizing, interactions, stipulating the functional significance of local frustration in imparting native-like dynamics. This study provides us with a deeper understanding of the structural basis of experimentally observed behavior, and opens the way to the development of more accurate models for exploring protein dynamics. PMID:20585542

Using entropy maximization to understand the determinants of structural dynamics beyond native contact topology.

PubMed

Lezon, Timothy R; Bahar, Ivet

2010-06-17

Comparison of elastic network model predictions with experimental data has provided important insights on the dominant role of the network of inter-residue contacts in defining the global dynamics of proteins. Most of these studies have focused on interpreting the mean-square fluctuations of residues, or deriving the most collective, or softest, modes of motions that are known to be insensitive to structural and energetic details. However, with increasing structural data, we are in a position to perform a more critical assessment of the structure-dynamics relations in proteins, and gain a deeper understanding of the major determinants of not only the mean-square fluctuations and lowest frequency modes, but the covariance or the cross-correlations between residue fluctuations and the shapes of higher modes. A systematic study of a large set of NMR-determined proteins is analyzed using a novel method based on entropy maximization to demonstrate that the next level of refinement in the elastic network model description of proteins ought to take into consideration properties such as contact order (or sequential separation between contacting residues) and the secondary structure types of the interacting residues, whereas the types of amino acids do not play a critical role. Most importantly, an optimal description of observed cross-correlations requires the inclusion of destabilizing, as opposed to exclusively stabilizing, interactions, stipulating the functional significance of local frustration in imparting native-like dynamics. This study provides us with a deeper understanding of the structural basis of experimentally observed behavior, and opens the way to the development of more accurate models for exploring protein dynamics.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Formaggio, J. A.; Zeller, G. P.

Since its original postulation by Wolfgang Pauli in 1930, the neutrino has played a prominent role in our understanding of nuclear and particle physics. In the intervening 80 years, scientists have detected and measured neutrinos from a variety of sources, both man-made and natural. Underlying all of these observations, and any inferences we may have made from them, is an understanding of how neutrinos interact with matter. Knowledge of neutrino interaction cross sections is an important and necessary ingredient in any neutrino measurement. With the advent of new precision experiments, the demands on our understanding of neutrino interactions is becomingmore » even greater. The purpose of this article is to survey our current knowledge of neutrino cross sections across all known energy scales: from the very lowest energies to the highest that we hope to observe. The article covers a wide range of neutrino interactions including coherent scattering, neutrino capture, inverse beta decay, low energy nuclear interactions, quasi-elastic scattering, resonant pion production, kaon production, deep inelastic scattering and ultra-high energy interactions. Strong emphasis is placed on experimental data whenever such measurements are available.« less

From eV to EeV: Neutrino cross sections across energy scales

NASA Astrophysics Data System (ADS)

Formaggio, J. A.; Zeller, G. P.

2012-07-01

Since its original postulation by Wolfgang Pauli in 1930, the neutrino has played a prominent role in our understanding of nuclear and particle physics. In the intervening 80 years, scientists have detected and measured neutrinos from a variety of sources, both man made and natural. Underlying all of these observations, and any inferences we may have made from them, is an understanding of how neutrinos interact with matter. Knowledge of neutrino interaction cross sections is an important and necessary ingredient in any neutrino measurement. With the advent of new precision experiments, the demands on our understanding of neutrino interactions is becoming even greater. The purpose of this article is to survey our current knowledge of neutrino cross sections across all known energy scales: from the very lowest energies to the highest that we hope to observe. The article covers a wide range of neutrino interactions including coherent scattering, neutrino capture, inverse beta decay, low-energy nuclear interactions, quasielastic scattering, resonant pion production, kaon production, deep inelastic scattering, and ultrahigh energy interactions. Strong emphasis is placed on experimental data whenever such measurements are available.

Angiotensins in Alzheimer's disease - friend or foe?

PubMed

Kehoe, Patrick G; Miners, Scott; Love, Seth

2009-12-01

The renin-angiotensin system (RAS) is an important regulator of blood pressure. Observational and experimental studies suggest that alterations in blood pressure and components of the brain RAS contribute to the development and progression of Alzheimer's disease (AD), resulting in changes that can lead or contribute to cognitive decline. The complexity of the RAS and diversity of its interactions with neurological processes have recently become apparent but large gaps in our understanding still remain. Modulation of activity of components of the brain RAS offers substantial opportunities for the treatment and prevention of dementia, including AD. This paper reviews molecular, genetic, experimental and clinical data as well as the therapeutic opportunities that relate to the involvement of the RAS in AD.

Effects of convection patterns on freckle formation of directionally solidified Nickel-based superalloy casting with abruptly varying cross-sections

NASA Astrophysics Data System (ADS)

Qin, Ling; Shen, Jun; Li, Qiudong; Shang, Zhao

2017-05-01

The effects of convection patterns on freckle formation of directionally solidified Nickel-based superalloy sample with abruptly varying cross-sections were investigated experimentally and numerically. The experimental results demonstrate that freckles were only observed at the bottom of larger cross-section. Numerical results indicate that this phenomenon should be attributed to the different convection patterns at front of solidification interface. As the withdrawal rate increased, the primary dendrites spacing has an obvious influence on freckle formation. A more in-depth investigation of the convection patterns can provide a better understanding of freckle formation and perhaps offer methods to minimize freckles in turbine blades.

Observation of extremely strong shock waves in solids launched by petawatt laser heating

DOE PAGES

Lancaster, K. L.; Robinson, A. P. L.; Pasley, J.; ...

2017-08-25

Understanding hydrodynamic phenomena driven by fast electron heating is important for a range of applications including fast electron collimation schemes for fast ignition and the production and study of hot, dense matter. In this work, detailed numerical simulations modelling the heating, hydrodynamic evolution, and extreme ultra-violet (XUV) emission in combination with experimental XUV images indicate shock waves of exceptional strength (200 Mbar) launched due to rapid heating of materials via a petawatt laser. In conclusion, we discuss in detail the production of synthetic XUV images and how they assist us in interpreting experimental XUV images captured at 256 eV usingmore » a multi-layer spherical mirror.« less

The structure of the nucleon: Elastic electromagnetic form factors

DOE PAGES

Punjabi, V.; Perdrisat, C. F.; Jones, M. K.; ...

2015-07-10

Precise proton and neutron form factor measurements at Jefferson Lab, using spin observables, have recently made a significant contribution to the unraveling of the internal structure of the nucleon. Accurate experimental measurements of the nucleon form factors are a test-bed for understanding how the nucleon's static properties and dynamical behavior emerge from QCD, the theory of the strong interactions between quarks. There has been enormous theoretical progress, since the publication of the Jefferson Lab proton form factor ratio data, aiming at reevaluating the picture of the nucleon. We will review the experimental and theoretical developments in this field and discussmore » the outlook for the future.« less

Findings from the UK and Canadian Space Situational Awareness (SSA) Experimentation during the Relocation of SKYNET 5A Satellite

NASA Astrophysics Data System (ADS)

Ash, A.; Scott, L.; Feline, W.

2016-09-01

This paper describes the planning, execution, analysis and lessons identified from a collaborative Space Situational Awareness (SSA) experiment to observe the SKYNET 5A satellite during a series of orbital maneuvers that occurred in the summer of 2015. In March 2015 Airbus Defence and Space (Airbus DS) announced its intention to relocate the SKYNET 5A satellite from the Atlantic to the Asia Pacific region to increase its global coverage; this provided an opportunity to observe this high value asset to explore the challenges and technical solutions related to deep space SSA. Within the UK the Defence Science and Technology Laboratory (Dstl, part of the UK Ministry of Defence) were established as the lead agency to plan the observation campaign utilising operational and emerging experimental SSA capabilities. The campaign was then expanded to involve Canada, the United States and Australia under the auspices of the Combined Space Operations (CSpO) Memorandum of Understanding (MOU) to further explore the coordination of observations between operational systems and potential fusion of data collected using experimental SSA assets. The focus for this paper is the collaborative work between Dstl and Defence Research and Development Canada (DRDC) that featured a period of experimentation to explore methods that enable cross cueing between ground-based and space-based SSA sensors, namely the UK Starbrook facility (located on the island of Cyprus), and NEOSSat/ Sapphire space surveillance satellites located in low-Earth orbit. A number of conclusions and lessons are identified in this paper that seek to inform the wider SSA community on the challenges, potential solutions and benefits of operating a distributed SSA architecture such as the one utilized during this experiment.

Population of computational rabbit-specific ventricular action potential models for investigating sources of variability in cellular repolarisation.

PubMed

Gemmell, Philip; Burrage, Kevin; Rodriguez, Blanca; Quinn, T Alexander

2014-01-01

Variability is observed at all levels of cardiac electrophysiology. Yet, the underlying causes and importance of this variability are generally unknown, and difficult to investigate with current experimental techniques. The aim of the present study was to generate populations of computational ventricular action potential models that reproduce experimentally observed intercellular variability of repolarisation (represented by action potential duration) and to identify its potential causes. A systematic exploration of the effects of simultaneously varying the magnitude of six transmembrane current conductances (transient outward, rapid and slow delayed rectifier K(+), inward rectifying K(+), L-type Ca(2+), and Na(+)/K(+) pump currents) in two rabbit-specific ventricular action potential models (Shannon et al. and Mahajan et al.) at multiple cycle lengths (400, 600, 1,000 ms) was performed. This was accomplished with distributed computing software specialised for multi-dimensional parameter sweeps and grid execution. An initial population of 15,625 parameter sets was generated for both models at each cycle length. Action potential durations of these populations were compared to experimentally derived ranges for rabbit ventricular myocytes. 1,352 parameter sets for the Shannon model and 779 parameter sets for the Mahajan model yielded action potential duration within the experimental range, demonstrating that a wide array of ionic conductance values can be used to simulate a physiological rabbit ventricular action potential. Furthermore, by using clutter-based dimension reordering, a technique that allows visualisation of multi-dimensional spaces in two dimensions, the interaction of current conductances and their relative importance to the ventricular action potential at different cycle lengths were revealed. Overall, this work represents an important step towards a better understanding of the role that variability in current conductances may play in experimentally observed intercellular variability of rabbit ventricular action potential repolarisation.

Population of Computational Rabbit-Specific Ventricular Action Potential Models for Investigating Sources of Variability in Cellular Repolarisation

PubMed Central

Gemmell, Philip; Burrage, Kevin; Rodriguez, Blanca; Quinn, T. Alexander

2014-01-01

Variability is observed at all levels of cardiac electrophysiology. Yet, the underlying causes and importance of this variability are generally unknown, and difficult to investigate with current experimental techniques. The aim of the present study was to generate populations of computational ventricular action potential models that reproduce experimentally observed intercellular variability of repolarisation (represented by action potential duration) and to identify its potential causes. A systematic exploration of the effects of simultaneously varying the magnitude of six transmembrane current conductances (transient outward, rapid and slow delayed rectifier K+, inward rectifying K+, L-type Ca2+, and Na+/K+ pump currents) in two rabbit-specific ventricular action potential models (Shannon et al. and Mahajan et al.) at multiple cycle lengths (400, 600, 1,000 ms) was performed. This was accomplished with distributed computing software specialised for multi-dimensional parameter sweeps and grid execution. An initial population of 15,625 parameter sets was generated for both models at each cycle length. Action potential durations of these populations were compared to experimentally derived ranges for rabbit ventricular myocytes. 1,352 parameter sets for the Shannon model and 779 parameter sets for the Mahajan model yielded action potential duration within the experimental range, demonstrating that a wide array of ionic conductance values can be used to simulate a physiological rabbit ventricular action potential. Furthermore, by using clutter-based dimension reordering, a technique that allows visualisation of multi-dimensional spaces in two dimensions, the interaction of current conductances and their relative importance to the ventricular action potential at different cycle lengths were revealed. Overall, this work represents an important step towards a better understanding of the role that variability in current conductances may play in experimentally observed intercellular variability of rabbit ventricular action potential repolarisation. PMID:24587229

New Perspectives of "old" Data Sources: the Dataset of Long-Term Research Watersheds in the Former Soviet Union for the Task of Hydrological Models Development, Verification and Comparison

NASA Astrophysics Data System (ADS)

Lebedeva, L.; Semenova, O.

2013-12-01

Lack of detailed process-oriented observational data is often claimed as one of the major obstacle for further advance of hydrological process understanding and development of deterministic models that do not rely on calibration. New sources of hydrological information (satellites, radars etc.) have the perspectives for the future but can not completely replace conventional and experimental observations at the moment. Long-term data-rich research catchments remain valuable if not the only source of information for development, verification, regionalization and comparison of different hydrological and environmental models. There existed the set of more than 20 such basins that were operated according to single observational program from the 1930-1950th to 1990th in the former Soviet Union. Research basins, so called water-balance stations, covered all main climatic and landscape zones such as taiga, forest-steppe, steppe, desert, mountains and permafrost regions. Each station conducted broad range of standard, special and experimental hydrometeorological field studies including spatially distributed meteorological observations, soil and snow variable states, measurements of the groundwater levels, hydrochemistry, evapotranspiration, discharges in several, often nested, slope- and small-scale watersheds, etc. The data were accompanied by the descriptions of observational techniques and landscapes allowing linking natural conditions with dominant hydrological processes. Each station is representative for larger area and the results of local studies could be transferred to other basins in similar conditions. Till recently the data existed only in hard copies in Russian language therefore they are not enough explored yet. We are currently digitizing main part of the observational and supportive materials and make it available for any scientific purpose via website http://hydrograph-model.ru/. We propose to hydrological community to use the data for comprehensive intercomparison studies of our models and their modules to reject inadequate algorithms and advance our process understanding and modeling efforts in different environments.

The HPS experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Colaneri, Luca

2017-04-01

With the experimental discovery of the Higgs boson, the Standard Model has been considered veri ed in all its previsions. The Standard Model, though, is still considered an incomplete theory, because it fails to address many theoretical and phenomenological issues. Among those, it doesn't provide any viable Dark Matter candidate. Many Beyond-Standard Model theories, such as the Supersymmetric Standard Model, provide possible solutions. In this work we have reported the experimental observations that led to considerate the existence of a new Force, mediated by a new massive vector boson, that could address all the observed phenomenology. This new dark Forcemore » could open an observational channel between the Standard Model and a new Dark Sector, convey by the interaction of the Standard Model photon with the massive dark photon, also called the A'. Purpose of this work was to develop an independent study of the background processes and the implementation of an independent event generator, to better understand the kinematics of the produced particles in the process e - +W → e - +W' + e + + e - and validate, or invalidate, the o cial event generator.« less

In silico prediction of pharmaceutical degradation pathways: a benchmarking study.

PubMed

Kleinman, Mark H; Baertschi, Steven W; Alsante, Karen M; Reid, Darren L; Mowery, Mark D; Shimanovich, Roman; Foti, Chris; Smith, William K; Reynolds, Dan W; Nefliu, Marcela; Ott, Martin A

2014-11-03

Zeneth is a new software application capable of predicting degradation products derived from small molecule active pharmaceutical ingredients. This study was aimed at understanding the current status of Zeneth's predictive capabilities and assessing gaps in predictivity. Using data from 27 small molecule drug substances from five pharmaceutical companies, the evolution of Zeneth predictions through knowledge base development since 2009 was evaluated. The experimentally observed degradation products from forced degradation, accelerated, and long-term stability studies were compared to Zeneth predictions. Steady progress in predictive performance was observed as the knowledge bases grew and were refined. Over the course of the development covered within this evaluation, the ability of Zeneth to predict experimentally observed degradants increased from 31% to 54%. In particular, gaps in predictivity were noted in the areas of epimerizations, N-dealkylation of N-alkylheteroaromatic compounds, photochemical decarboxylations, and electrocyclic reactions. The results of this study show that knowledge base development efforts have increased the ability of Zeneth to predict relevant degradation products and aid pharmaceutical research. This study has also provided valuable information to help guide further improvements to Zeneth and its knowledge base.

A Comparative Study of Collagen Matrix Density Effect on Endothelial Sprout Formation Using Experimental and Computational Approaches.

PubMed

Shamloo, Amir; Mohammadaliha, Negar; Heilshorn, Sarah C; Bauer, Amy L

2016-04-01

A thorough understanding of determining factors in angiogenesis is a necessary step to control the development of new blood vessels. Extracellular matrix density is known to have a significant influence on cellular behaviors and consequently can regulate vessel formation. The utilization of experimental platforms in combination with numerical models can be a powerful method to explore the mechanisms of new capillary sprout formation. In this study, using an integrative method, the interplay between the matrix density and angiogenesis was investigated. Owing the fact that the extracellular matrix density is a global parameter that can affect other parameters such as pore size, stiffness, cell-matrix adhesion and cross-linking, deeper understanding of the most important biomechanical or biochemical properties of the ECM causing changes in sprout morphogenesis is crucial. Here, we implemented both computational and experimental methods to analyze the mechanisms responsible for the influence of ECM density on the sprout formation that is difficult to be investigated comprehensively using each of these single methods. For this purpose, we first utilized an innovative approach to quantify the correspondence of the simulated collagen fibril density to the collagen density in the experimental part. Comparing the results of the experimental study and computational model led to some considerable achievements. First, we verified the results of the computational model using the experimental results. Then, we reported parameters such as the ratio of proliferating cells to migrating cells that was difficult to obtain from experimental study. Finally, this integrative system led to gain an understanding of the possible mechanisms responsible for the effect of ECM density on angiogenesis. The results showed that stable and long sprouts were observed at an intermediate collagen matrix density of 1.2 and 1.9 mg/ml due to a balance between the number of migrating and proliferating cells. As a result of weaker connections between the cells and matrix, a lower collagen matrix density (0.7 mg/ml) led to unstable and broken sprouts. However, higher matrix density (2.7 mg/ml) suppressed sprout formation due to the high level of matrix entanglement, which inhibited cell migration. This study also showed that extracellular matrix density can influence sprout branching. Our experimental results support this finding.

One-Dimensional Modeling Studies of the Gaseous Electronics Conference RF Reference Cell

PubMed Central

Govindan, T. R.; Meyyappan, M.

1995-01-01

A review of the one-dimensional modeling studies in the literature of the Gaseous Electronics Conference (GEC) reference plasma reactor is presented. Most of the studies are based on the fluid model description of the discharge and some utilize hybrid fluid-kinetic schemes. Both models are discussed here briefly. The models provide a basic understanding of the discharge mechanisms and reproduce several critical discharge features observed experimentally. PMID:29151755

Flow in the Deep Mantle from Seisimc Anisotropy: Progress and Prospects

NASA Astrophysics Data System (ADS)

Long, M. D.

2017-12-01

Observations of seismic anisotropy, or the directional dependence of seismic wavespeeds, provide one some of the most direct constraints on the pattern of flow in the Earth's mantle. In particular, as our understanding of crystallographic preferred orientation (CPO) of olivine aggregates under a range of deformation conditions has improved, our ability to exploit observations of upper mantle anisotropy has led to fundamental discoveries about the patterns of flow in the upper mantle and the drivers of that flow. It has been a challenge, however, to develop a similar framework for understanding flow in the deep mantle (transition zone, uppermost lower mantle, and lowermost mantle), even though there is convincing observational evidence for seismic anisotropy at these depths. Recent progress on the observational front has allowed for an increasingly detailed view of mid-mantle anisotropy (transition zone and uppermost lower mantle), particularly in subduction systems, which may eventually lead to a better understanding of mid-mantle deformation and the dynamics of slab interaction with the surrounding mid-mantle. New approaches to the observation and modeling of lowermost mantle anisotropy, in combination with constraints from mineral physics, are progressing towards interpretive frameworks that allow for the discrimination of different mantle flow geometries in different regions of D". In particular, observational strategies that involve the use of multiple types of body wave phases sampled over a range of propagation azimuths enable detailed forward modeling approaches that can discriminate between different mechanisms for D" anisotropy (e.g., CPO of post-perovskite, bridgmanite, or ferropericlase, or shape preferred orientation of partial melt) and identify plausible anisotropic orientations. We have recently begun to move towards a full waveform modeling approach in this work, which allows for a more accurate simulation for seismic wave propagation. Ongoing improvements in seismic observational strategies, experimental and computational mineral physics, and geodynamic modeling approaches are leading to new avenues for understanding flow in the deep mantle through the study of seismic anisotropy.

The Experimental Design Ability Test (EDAT)

ERIC Educational Resources Information Center

Sirum, Karen; Humburg, Jennifer

2011-01-01

Higher education goals include helping students develop evidence based reasoning skills; therefore, scientific thinking skills such as those required to understand the design of a basic experiment are important. The Experimental Design Ability Test (EDAT) measures students' understanding of the criteria for good experimental design through their…

Experimental evolution and the dynamics of genomic mutation rate modifiers.

PubMed

Raynes, Y; Sniegowski, P D

2014-11-01

Because genes that affect mutation rates are themselves subject to mutation, mutation rates can be influenced by natural selection and other evolutionary forces. The population genetics of mutation rate modifier alleles has been a subject of theoretical interest for many decades. Here, we review experimental contributions to our understanding of mutation rate modifier dynamics. Numerous evolution experiments have shown that mutator alleles (modifiers that elevate the genomic mutation rate) can readily rise to high frequencies via genetic hitchhiking in non-recombining microbial populations. Whereas these results certainly provide an explanatory framework for observations of sporadically high mutation rates in pathogenic microbes and in cancer lineages, it is nonetheless true that most natural populations have very low mutation rates. This raises the interesting question of how mutator hitchhiking is suppressed or its phenotypic effect reversed in natural populations. Very little experimental work has addressed this question; with this in mind, we identify some promising areas for future experimental investigation.

Localization and socialization: Experimental insights into the functional architecture of IP3 receptors

NASA Astrophysics Data System (ADS)

Diambra, Luis; Marchant, Jonathan S.

2009-09-01

Inositol 1,4,5-trisphosphate (IP3)-evoked Ca2+ signals display great spatiotemporal malleability. This malleability depends on diversity in both the cellular organization and in situ functionality of IP3 receptors (IP3Rs) that regulate Ca2+ release from the endoplasmic reticulum (ER). Recent experimental data imply that these considerations are not independent, such that—as with other ion channels—the local organization of IP3Rs impacts their functionality, and reciprocally IP3R activity impacts their organization within native ER membranes. Here, we (i) review experimental data that lead to our understanding of the "functional architecture" of IP3Rs within the ER, (ii) propose an updated terminology to span the organizational hierarchy of IP3Rs observed in intact cells, and (iii) speculate on the physiological significance of IP3R socialization in Ca2+ dynamics, and consequently the emerging need for modeling studies to move beyond gridded, planar, and static simulations of IP3R clustering even over short experimental timescales.

Comparison of Visual and Acoustic Emission Observations in a Four Point Bending Experiment on Barre Granite

NASA Astrophysics Data System (ADS)

Li, Bing Qiuyi; Einstein, Herbert H.

2017-09-01

We present an experimental study in which a pre-notched specimen of Barre Granite was subjected to four point bending under crack mouth opening displacement control. The experimental observations consisted of load-displacement measurements, acoustic emissions, and photography on a macroscopic ( cm) as well as microscopic ( μm) scale. These observations were compared and analysed to better understand process zone development and crack propagation. Load-displacement data showed that the load reaches its maximum at crack initiation, and the machine input work is constant while the crack propagates. AE moment magnitudes between Mw = -6 to -10 were observed, and focal mechanisms consisted of both shear and tensile components. During process zone development, AE formed a large cloud of events located near the notch tip and then tended to occur away from the notch tip as the crack propagated. Image analysis at the microscopic scale showed that microcracks formed and coalesced during process zone development; specifically, the microcracks initiated in tension and then propagated as a series of en-echelon cracks. In general, the synthesis of the three observations showed that a wider bulb of activity at lower energy tended to occur during process zone development, while crack propagation tended to be more spatially concentrated and contained higher energy.

Experimental and Computational Study of Sonic and Supersonic Jet Plumes

NASA Technical Reports Server (NTRS)

Venkatapathy, E.; Naughton, J. W.; Fletcher, D. G.; Edwards, Thomas A. (Technical Monitor)

1994-01-01

Study of sonic and supersonic jet plumes are relevant to understanding such phenomenon as jet-noise, plume signatures, and rocket base-heating and radiation. Jet plumes are simple to simulate and yet, have complex flow structures such as Mach disks, triple points, shear-layers, barrel shocks, shock-shear-layer interaction, etc. Experimental and computational simulation of sonic and supersonic jet plumes have been performed for under- and over-expanded, axisymmetric plume conditions. The computational simulation compare very well with the experimental observations of schlieren pictures. Experimental data such as temperature measurements with hot-wire probes are yet to be measured and will be compared with computed values. Extensive analysis of the computational simulations presents a clear picture of how the complex flow structure develops and the conditions under which self-similar flow structures evolve. From the computations, the plume structure can be further classified into many sub-groups. In the proposed paper, detail results from the experimental and computational simulations for single, axisymmetric, under- and over-expanded, sonic and supersonic plumes will be compared and the fluid dynamic aspects of flow structures will be discussed.

Scaffolded Instruction Improves Student Understanding of the Scientific Method & Experimental Design

ERIC Educational Resources Information Center

D'Costa, Allison R.; Schlueter, Mark A.

2013-01-01

Implementation of a guided-inquiry lab in introductory biology classes, along with scaffolded instruction, improved students' understanding of the scientific method, their ability to design an experiment, and their identification of experimental variables. Pre- and postassessments from experimental versus control sections over three semesters…

Tutorial: Electroporation of cells in complex materials and tissue

NASA Astrophysics Data System (ADS)

Rems, L.; Miklavčič, D.

2016-05-01

Electroporation is being successfully used in biology, medicine, food processing, and biotechnology, and in some environmental applications. Recent applications also include in addition to classical electroporation, where cells are exposed to micro- or milliseconds long pulses, exposures to extremely short nanosecond pulses, i.e., high-frequency electroporation. Electric pulses are applied to cells in different structural configurations ranging from suspended cells to cells in tissues. Understanding electroporation of cells in tissues and other complex environments is a key to its successful use and optimization in various applications. Thus, explanation will be provided theoretically/numerically with relation to experimental observations by scaling our understanding of electroporation from the molecular level of the cell membrane up to the tissue level.

Understanding the Effect of Plastic Deformation on Elastic Modulus of Metals Based on a Percolation Model with Electron Work Function

NASA Astrophysics Data System (ADS)

Li, Qingda; Hua, Guomin; Lu, Hao; Yu, Bin; Li, D. Y.

2018-05-01

The elastic modulus of materials is usually treated as a constant in engineering applications. However, plastic deformation may result in changes in the elastic modulus of metallic materials. Using brass, aluminum, and low-carbon steel as sample materials, it is demonstrated that plastic deformation decreased the elastic modulus of the materials by 10% to 20%. A percolation model incorporating the electron work function is proposed to correlate such plastic-strain-induced variations in the elastic modulus to corresponding changes in the electron work function. Efforts are made to understand the observed phenomenon on an electronic basis. The obtained experimental results are consistent with the theoretical analysis.

Challenges facing an understanding of the nature of low-energy excited states in photosynthesis.

PubMed

Reimers, Jeffrey R; Biczysko, Malgorzata; Bruce, Douglas; Coker, David F; Frankcombe, Terry J; Hashimoto, Hideki; Hauer, Jürgen; Jankowiak, Ryszard; Kramer, Tobias; Linnanto, Juha; Mamedov, Fikret; Müh, Frank; Rätsep, Margus; Renger, Thomas; Styring, Stenbjörn; Wan, Jian; Wang, Zhuan; Wang-Otomo, Zheng-Yu; Weng, Yu-Xiang; Yang, Chunhong; Zhang, Jian-Ping; Freiberg, Arvi; Krausz, Elmars

2016-09-01

While the majority of the photochemical states and pathways related to the biological capture of solar energy are now well understood and provide paradigms for artificial device design, additional low-energy states have been discovered in many systems with obscure origins and significance. However, as low-energy states are naively expected to be critical to function, these observations pose important challenges. A review of known properties of low energy states covering eight photochemical systems, and options for their interpretation, are presented. A concerted experimental and theoretical research strategy is suggested and outlined, this being aimed at providing a fully comprehensive understanding. Copyright © 2016 Elsevier B.V. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mehl, M; Kukkadapu, G; Kumar, K

The use of gasoline in homogeneous charge compression ignition engines (HCCI) and in duel fuel diesel - gasoline engines, has increased the need to understand its compression ignition processes under engine-like conditions. These processes need to be studied under well-controlled conditions in order to quantify low temperature heat release and to provide fundamental validation data for chemical kinetic models. With this in mind, an experimental campaign has been undertaken in a rapid compression machine (RCM) to measure the ignition of gasoline mixtures over a wide range of compression temperatures and for different compression pressures. By measuring the pressure history duringmore » ignition, information on the first stage ignition (when observed) and second stage ignition are captured along with information on the phasing of the heat release. Heat release processes during ignition are important because gasoline is known to exhibit low temperature heat release, intermediate temperature heat release and high temperature heat release. In an HCCI engine, the occurrence of low-temperature and intermediate-temperature heat release can be exploited to obtain higher load operation and has become a topic of much interest for engine researchers. Consequently, it is important to understand these processes under well-controlled conditions. A four-component gasoline surrogate model (including n-heptane, iso-octane, toluene, and 2-pentene) has been developed to simulate real gasolines. An appropriate surrogate mixture of the four components has been developed to simulate the specific gasoline used in the RCM experiments. This chemical kinetic surrogate model was then used to simulate the RCM experimental results for real gasoline. The experimental and modeling results covered ultra-lean to stoichiometric mixtures, compressed temperatures of 640-950 K, and compression pressures of 20 and 40 bar. The agreement between the experiments and model is encouraging in terms of first-stage (when observed) and second-stage ignition delay times and of heat release rate. The experimental and computational results are used to gain insight into low and intermediate temperature processes during gasoline ignition.« less

[Cognitive experimental approach to anxiety disorders].

PubMed

Azaïs, F

1995-01-01

Cognitive psychology is proposing a functional model to explain the mental organisation leading to emotional disorders. Among these disorders, anxiety spectrum represents a domain in which this model seems to be interesting for an efficient and comprehensive approach of the pathology. Number of behavioral or cognitive psychotherapeutic methods are relating to these cognitive references, but the theorical concepts of cognitive "shemata" or cognitive "processes" evoked to describe mental functioning in anxiety need an experimental approach for a better rational understanding. Cognitive function as perception, attention or memory can be explored in this domaine in an efficient way, allowing a more precise study of each stage of information processing. The cognitive model proposed in the psychopathology of anxiety suggests that anxious subjects are characterized by biases in processing of emotionally valenced information. This hypothesis suggests functional interference in information processing in these subjects, leading to an anxious response to the most of different stimuli. Experimental approach permit to explore this hypothesis, using many tasks for testing different cognitive dysfunction evoked in the anxious cognitive organisation. Impairments revealed in anxiety disorders seem to result from specific biases in threat-related information processing, involving several stages of cognitive processes. Semantic interference, attentional bias, implicit memory bias and priming effect are the most often disorders observed in anxious pathology, like simple phobia, generalised anxiety, panic disorder or post-traumatic stress disorder. These results suggest a top-down organisation of information processing in anxious subjects, who tend to detect, perceive and label many situations as threatening experience. The processes of reasoning and elaboration are consequently impaired in their adaptative function to threat, leading to the anxious response observed in clinical condition. The cognitive, behavioral and emotional components of this anxious reaction maintain the stressful experience for the subject, in which the self cognitive competence remain pathologically decreased. Cognitive psychology proposes an interesting model for the understanding of anxiety, in a domain in which subjectivity could benefit from an experimental approach.(ABSTRACT TRUNCATED AT 400 WORDS)

An experimental tool to look in a magma chamber

NASA Astrophysics Data System (ADS)

Gonde, C.; Massare, D.; Bureau, H.; Martel, C.; Pichavant, M.; Clocchiatti, R.

2005-12-01

Understanding the physical and geochemical processes occurring in the volcanoes roots is one of the fundamental tasks of research in the experimental petrology community. This requires experimental tools able to create confining conditions appropriate for magma chambers and conduits. However, the characterization of some natural magmatic processes requires more than a blink experimental approach, to be rigorously studied. In some cases, the in situ approach is the only one issue, because it permits the observation of processes (crystallization of mineral phases, bubble growth.) and their kinetic studies. Here we present a powerful tool, a transparent internally heated autoclave. With this apparatus, pressures (up to 0.3 GPa) and temperatures (up to 900°C) appropriate for subvolcanic magma reservoirs can be obtained. Because it is equipped with transparent sapphire windows, either images or movies can be recorded during an experiment. The pressure medium is Argon, and heating is achieved by a W winding placed into the pressure vessel. Pressure and temperature are calibrated using both well known melting points (eg. salts, metals) and phase transitions (AgI), either at room temperature or at medium and high temperatures. During an experiment, the experimental charge is held between two thick windows of diamond, placed in the furnace cylinder. The experimental volume is about 1 mm3. The observation and numeric record are made along the horizontal axis, through the windows. This apparatus is currently used for studies of nucleation and growth of gas bubbles in a silicate melt. The first results will be presented at the meeting.

Structure, dynamics and bifurcations of discrete solitons in trapped ion crystals

NASA Astrophysics Data System (ADS)

Landa, H.; Reznik, B.; Brox, J.; Mielenz, M.; Schaetz, T.

2013-09-01

We study discrete solitons (kinks) accessible in the state-of-the-art trapped ion experiments, considering zigzag crystals and quasi-three-dimensional configurations, both theoretically and experimentally. We first extend the theoretical understanding of different phenomena predicted and recently experimentally observed in the structure and dynamics of these topological excitations. Employing tools from topological degree theory, we analyze bifurcations of crystal configurations in dependence on the trapping parameters, and investigate the formation of kink configurations and the transformations of kinks between different structures. This allows us to accurately define and calculate the effective potential experienced by solitons within the Wigner crystal, and study how this (so-called Peierls-Nabarro) potential gets modified to a non-periodic globally trapping potential in certain parameter regimes. The kinks' rest mass (energy) and spectrum of modes are computed and the dynamics of linear and nonlinear kink oscillations are analyzed. We also present novel, experimentally observed, configurations of kinks incorporating a large-mass defect realized by an embedded molecular ion, and of pairs of interacting kinks stable for long times, offering the perspective for exploring and exploiting complex collective nonlinear excitations, controllable on the quantum level.

Promoting and Scaffolding Elementary School Students' Attitudes Toward Science and Argumentation Through a Science and Society Intervention

NASA Astrophysics Data System (ADS)

Hong, Zuway-R.; Lin, Huann-shyang; Wang, Hsin-Hui; Chen, Hsiang-Ting; Yang, Kuay-Keng

2013-07-01

This study investigated the effects of a science and society intervention on elementary school students' argumentation skills and their attitudes toward science. One hundred and eleven fifth grade students volunteered as an experimental group to join a 12-week intervention; another 107 sixth grade students volunteered to be the comparison group. All participants completed the Student Questionnaire at the beginning and end of this study. Observation and interview results were used to triangulate and consolidate the quantitative findings. The data showed that after the intervention, the quality of the experimental group students' arguments and their attitudes toward science were significantly higher than their comparison group counterparts. In addition, the experimental group boys made significantly greater progress in the quality of their argumentation from the pretest to posttest than the girls; and low achievers made the most significant progress in their attitudes toward science and quality of argumentation. Interviews and observations indicated that their understandings of explanation and argumentation changed over the intervention. This indicated that a science and society intervention can enhance both the ability of students to develop strong arguments and their attitudes toward science.

Dynamics of large-scale brain activity in normal arousal states and epileptic seizures

NASA Astrophysics Data System (ADS)

Robinson, P. A.; Rennie, C. J.; Rowe, D. L.

2002-04-01

Links between electroencephalograms (EEGs) and underlying aspects of neurophysiology and anatomy are poorly understood. Here a nonlinear continuum model of large-scale brain electrical activity is used to analyze arousal states and their stability and nonlinear dynamics for physiologically realistic parameters. A simple ordered arousal sequence in a reduced parameter space is inferred and found to be consistent with experimentally determined parameters of waking states. Instabilities arise at spectral peaks of the major clinically observed EEG rhythms-mainly slow wave, delta, theta, alpha, and sleep spindle-with each instability zone lying near its most common experimental precursor arousal states in the reduced space. Theta, alpha, and spindle instabilities evolve toward low-dimensional nonlinear limit cycles that correspond closely to EEGs of petit mal seizures for theta instability, and grand mal seizures for the other types. Nonlinear stimulus-induced entrainment and seizures are also seen, EEG spectra and potentials evoked by stimuli are reproduced, and numerous other points of experimental agreement are found. Inverse modeling enables physiological parameters underlying observed EEGs to be determined by a new, noninvasive route. This model thus provides a single, powerful framework for quantitative understanding of a wide variety of brain phenomena.

Stress relaxation at a gelatin hydrogel-glass interface in direct shear sliding

NASA Astrophysics Data System (ADS)

Gupta, Vinit; Singh, Arun K.

2018-01-01

In this paper, we study experimentally the stress relaxation behavior of soft solids such as gelatin hydrogels on a smooth glass surface in direct shear sliding. It is observed experimentally that irrespective of pulling velocity, the sliding block relaxes to the same level of nonzero residual stress. However, residual stress increases with increasing gelatin concentration in the hydrogels. We have also validated a friction model for strong bond formation during steady relaxation in light of the experimental observations. Our theoretical analysis establishes that population of dangling chains at the sliding interface significantly affects the relaxation process. As a result, residual stress increases with increasing gelatin concentration or decreasing mesh size of the three-dimensional structures in the hydrogels. It is also found that the transition time, at which a weak bond converts to strong bond, increases with increasing mesh size of the hydrogels. Moreover, relaxation time constant of a strong bond decreases with increasing mesh size. However, activation length of a strong bond increases with mesh size. Finally, this study signifies the role of residual strength in frictional shear sliding and it is believed that these results should be useful to understand the role of residual stress in stick-slip instability.

Computational Fluid Dynamics of Choanoflagellate Filter-Feeding

NASA Astrophysics Data System (ADS)

Asadzadeh, Seyed Saeed; Walther, Jens; Nielsen, Lasse Tore; Kiorboe, Thomas; Dolger, Julia; Andersen, Anders

2017-11-01

Choanoflagellates are unicellular aquatic organisms with a single flagellum that drives a feeding current through a funnel-shaped collar filter on which bacteria-sized prey are caught. Using computational fluid dynamics (CFD) we model the beating flagellum and the complex filter flow of the choanoflagellate Diaphanoeca grandis. Our CFD simulations based on the current understanding of the morphology underestimate the experimentally observed clearance rate by more than an order of magnitude: The beating flagellum is simply unable to draw enough water through the fine filter. Our observations motivate us to suggest a radically different filtration mechanism that requires a flagellar vane (sheet), and addition of a wide vane in our CFD model allows us to correctly predict the observed clearance rate.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Esposito, A.; Pilloni, A.; Polosa, Antonio D.

Multiquark resonances are undoubtedly experimentally observed. The number of states and the amount of details on their properties have been growing over the years. It is very recent the discovery of two pentaquarks and the confirmation of four tetraquarks, two of which had not been observed before. We mainly review the theoretical understanding of this sector of particle physics phenomenology and present some considerations attempting a coherent description of the so called X and Z resonances. The prominent problems plaguing theoretical models, like the absence of selection rules limiting the number of states predicted, motivate new directions in model building.more » Lastly, data are reviewed going through all of the observed resonances with particular attention to their common features and the purpose of providing a starting point to further research.« less

Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition

PubMed Central

Freedman, Zachary; Zak, Donald R.; Xue, Kai; He, Zhili; Zhou, Jizhong

2013-01-01

Future rates of anthropogenic N deposition can slow the cycling and enhance the storage of C in forest ecosystems. In a northern hardwood forest ecosystem, experimental N deposition has decreased the extent of forest floor decay, leading to increased soil C storage. To better understand the microbial mechanisms mediating this response, we examined the functional genes derived from communities of actinobacteria and fungi present in the forest floor using GeoChip 4.0, a high-throughput functional-gene microarray. The compositions of functional genes derived from actinobacterial and fungal communities was significantly altered by experimental nitrogen deposition, with more heterogeneity detected in both groups. Experimental N deposition significantly decreased the richness and diversity of genes involved in the depolymerization of starch (∼12%), hemicellulose (∼16%), cellulose (∼16%), chitin (∼15%), and lignin (∼16%). The decrease in richness occurred across all taxonomic groupings detected by the microarray. The compositions of genes encoding oxidoreductases, which plausibly mediate lignin decay, were responsible for much of the observed dissimilarity between actinobacterial communities under ambient and experimental N deposition. This shift in composition and decrease in richness and diversity of genes encoding enzymes that mediate the decay process has occurred in parallel with a reduction in the extent of decay and accumulation of soil organic matter. Our observations indicate that compositional changes in actinobacterial and fungal communities elicited by experimental N deposition have functional implications for the cycling and storage of carbon in forest ecosystems. PMID:23220961

Exhaust Gas Recirculation Cooler Fouling in Diesel Applications: Fundamental Studies Deposit Properties and Microstructure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Storey, John Morse; Sluder, Scott; Lance, Michael J

2013-01-01

This paper reports on the results of experimental efforts aimed at improving the understanding of the mechanisms and conditions at play in the fouling of EGR coolers. An experimental apparatus was constructed to utilize simplified surrogate heat exchanger tubes in lieu of full-size heat exchangers. The use of these surrogate tubes allowed removal of the tubes after exposure to engine exhaust for study of the deposit layer and its properties. The exhaust used for fouling the surrogate tubes was produced using a modern medium-duty diesel engine fueled with both ultra-low sulfur diesel and biodiesel blends. At long exposure times, nomore » significant difference in the fouling rate was observed between fuel types and HC levels. Surface coatings for the tubes were also evaluated to determine their impact on deposit growth. No surface treatment or coating produced a reduction in the fouling rate or any evidence of deposit removal. In addition, microstructural analysis of the fouling layers was performed using optical and electron microscopy in order to better understand the deposition mechanism. The experimental results are consistent with thermophoretic deposition for deposit formation, and van der Waals attraction between the deposit surface and exhaust-borne particulate.« less

Simulated in vivo Electrophysiology Experiments Provide Previously Inaccessible Insights into Visual Physiology

PubMed Central

Quiroga, Maria del Mar; Price, Nicholas SC

2016-01-01

Lecture content and practical laboratory classes are ideally complementary. However, the types of experiments that have led to our detailed understanding of sensory neuroscience are often not amenable to classroom experimentation as they require expensive equipment, time-consuming surgeries, specialized experimental techniques, and the use of animals. While sometimes feasible in small group teaching, these experiments are not suitable for large cohorts of students. Previous attempts to expose students to sensory neuroscience experiments include: the use of electrophysiology preparations in invertebrates, data-driven simulations that do not replicate the experience of conducting an experiment, or simply observing an experiment in a research laboratory. We developed an online simulation of a visual neuroscience experiment in which extracellular recordings are made from a motion sensitive neuron. Students have control over stimulation parameters (direction and contrast) and can see and hear the action potential responses to stimuli as they are presented. The simulation provides an intuitive way for students to gain insight into neurophysiology, including experimental design, data collection and data analysis. Our simulation allows large cohorts of students to cost-effectively “experience” the results of animal research without ethical concerns, to be exposed to realistic data variability, and to develop their understanding of how sensory neuroscience experiments are conducted. PMID:27980465

The enhancement of students’ mathematical representation in junior high school using cognitive apprenticeship instruction (CAI)

NASA Astrophysics Data System (ADS)

Yusepa, B. G. P.; Kusumah, Y. S.; Kartasasmita, B. G.

2018-03-01

This study aims to get an in-depth understanding of the enhancement of students’ mathematical representation. This study is experimental research with pretest-posttest control group design. The subject of this study is the students’ of the eighth grade from junior high schools in Bandung: high-level and middle-level. In each school, two parallel groups were chosen as a control group and an experimental group. The experimental group was given cognitive apprenticeship instruction (CAI) treatment while the control group was given conventional learning. The results show that the enhancement of students’ mathematical representation who obtained CAI treatment was better than the conventional one, viewed which can be observed from the overall, mathematical prior knowledge (MPK), and school level. It can be concluded that CAI can be used as a good alternative learning model to enhance students’ mathematical representation.

Kinetic Monte Carlo Simulations of Scintillation Processes in NaI(Tl)

NASA Astrophysics Data System (ADS)

Kerisit, Sebastien; Wang, Zhiguo; Williams, Richard T.; Grim, Joel Q.; Gao, Fei

2014-04-01

Developing a comprehensive understanding of the processes that govern the scintillation behavior of inorganic scintillators provides a pathway to optimize current scintillators and allows for the science-driven search for new scintillator materials. Recent experimental data on the excitation density dependence of the light yield of inorganic scintillators presents an opportunity to incorporate parameterized interactions between excitations in scintillation models and thus enable more realistic simulations of the nonproportionality of inorganic scintillators. Therefore, a kinetic Monte Carlo (KMC) model of elementary scintillation processes in NaI(Tl) is developed in this paper to simulate the kinetics of scintillation for a range of temperatures and Tl concentrations as well as the scintillation efficiency as a function of excitation density. The ability of the KMC model to reproduce available experimental data allows for elucidating the elementary processes that give rise to the kinetics and efficiency of scintillation observed experimentally for a range of conditions.

Enhancing Ultimate Compressive Strength of Notch Embedded Steel Cylinders Using Overwrap CFRP Patch

NASA Astrophysics Data System (ADS)

Kabir, Mohammad Z.; Nazari, Alireza

2012-06-01

In this study, the application of Fiber Reinforced Polymer (FRP) patch for strengthening of the damaged area in thin walled steel cylinders under compression loading was investigated. In this direction, some experimental tests were carried out on the selected notch induced specimens with unique diameter-to-thickness ratio (D/t). The obtained results were compared to the intact cylinder in order to find out the reduction effect of notch on the buckling load of cylinders. Following that, the notched specimens were treated using externally FRP by wrapping around the notched area and the stability strength of the retrofitted specimens was measured experimentally. The investigation was also carried out in numerical analysis using FEM in order to develop the proposed technique for determination of optimum FRP configurations and also better understanding of the experimental observations considering the nonlinear behavior and failure modes for composite member.

Experimental characterization of 3-dimensional gravity-driven fingering in a porous medium

NASA Astrophysics Data System (ADS)

Dalbe, Marie-Julie; Juanes, Ruben

2017-11-01

When water infiltrates a dry porous media, a gravity-driven instability can be observed. Water will penetrate the porous media along preferential paths, called fingers. This gravity-driven unstable multiphase flow has important implications for natural phenomena such as rainwater infiltration in soil and secondary oil migration in reservoir rocks. While several experimental and numerical studies have described the instability in 2-dimensional (2D) settings, fundamental questions remain on the morphodynamics of gravity fingering in 3D. We developed a 3D experimental set-up based on planar laser-induced fluorescence of index-matched fluids that allows us to image this phenomenon dynamically. We study the impact of some crucial parameters such as rainfall rate or grain size on the finger size and velocity. In addition, experiments in stratified media reveal interesting dynamics of finger flow across material interfaces, an essential aspect towards the understanding of water infiltration in soils.

Experimental manipulation of avian social structure reveals segregation is carried over across contexts

PubMed Central

Firth, Josh A.; Sheldon, Ben C.

2015-01-01

Our current understanding of animal social networks is largely based on observations or experiments that do not directly manipulate associations between individuals. Consequently, evidence relating to the causal processes underlying such networks is limited. By imposing specified rules controlling individual access to feeding stations, we directly manipulated the foraging social network of a wild bird community, thus demonstrating how external factors can shape social structure. We show that experimentally imposed constraints were carried over into patterns of association at unrestricted, ephemeral food patches, as well as at nesting sites during breeding territory prospecting. Hence, different social contexts can be causally linked, and constraints at one level may have consequences that extend into other aspects of sociality. Finally, the imposed assortment was lost following the cessation of the experimental manipulation, indicating the potential for previously perturbed social networks of wild animals to recover from segregation driven by external constraints. PMID:25652839

Streaming and particle motion in acoustically-actuated leaky systems

NASA Astrophysics Data System (ADS)

Nama, Nitesh; Barnkob, Rune; Jun Huang, Tony; Kahler, Christian; Costanzo, Francesco

2017-11-01

The integration of acoustics with microfluidics has shown great promise for applications within biology, chemistry, and medicine. A commonly employed system to achieve this integration consists of a fluid-filled, polymer-walled microchannel that is acoustically actuated via standing surface acoustic waves. However, despite significant experimental advancements, the precise physical understanding of such systems remains a work in progress. In this work, we investigate the nature of acoustic fields that are setup inside the microchannel as well as the fundamental driving mechanism governing the fluid and particle motion in these systems. We provide an experimental benchmark using state-of-art 3D measurements of fluid and particle motion and present a Lagrangian velocity based temporal multiscale numerical framework to explain the experimental observations. Following verification and validation, we employ our numerical model to reveal the presence of a pseudo-standing acoustic wave that drives the acoustic streaming and particle motion in these systems.

High-energy side-peak emission of exciton-polariton condensates in high density regime

PubMed Central

Horikiri, Tomoyuki; Yamaguchi, Makoto; Kamide, Kenji; Matsuo, Yasuhiro; Byrnes, Tim; Ishida, Natsuko; Löffler, Andreas; Höfling, Sven; Shikano, Yutaka; Ogawa, Tetsuo; Forchel, Alfred; Yamamoto, Yoshihisa

2016-01-01

In a standard semiconductor laser, electrons and holes recombine via stimulated emission to emit coherent light, in a process that is far from thermal equilibrium. Exciton-polariton condensates–sharing the same basic device structure as a semiconductor laser, consisting of quantum wells coupled to a microcavity–have been investigated primarily at densities far below the Mott density for signatures of Bose-Einstein condensation. At high densities approaching the Mott density, exciton-polariton condensates are generally thought to revert to a standard semiconductor laser, with the loss of strong coupling. Here, we report the observation of a photoluminescence sideband at high densities that cannot be accounted for by conventional semiconductor lasing. This also differs from an upper-polariton peak by the observation of the excitation power dependence in the peak-energy separation. Our interpretation as a persistent coherent electron-hole-photon coupling captures several features of this sideband, although a complete understanding of the experimental data is lacking. A full understanding of the observations should lead to a development in non-equilibrium many-body physics. PMID:27193700

Time-Lapse, in Situ Imaging of Ice Crystal Growth Using Confocal Microscopy

PubMed Central

2016-01-01

Ice crystals nucleate and grow when a water solution is cooled below its freezing point. The growth velocities and morphologies of the ice crystals depend on many parameters, such as the temperature of ice growth, the melting temperature, and the interactions of solutes with the growing crystals. Three types of morphologies may appear: dendritic, cellular (or fingerlike), or the faceted equilibrium form. Understanding and controlling which type of morphology is formed is essential in several domains, from biology to geophysics and materials science. Obtaining, in situ, three dimensional observations without introducing artifacts due to the experimental technique is nevertheless challenging. Here we show how we can use laser scanning confocal microscopy to follow in real-time the growth of smoothed and faceted ice crystals in zirconium acetate solutions. Both qualitative and quantitative observations can be made. In particular, we can precisely measure the lateral growth velocity of the crystals, a measure otherwise difficult to obtain. Such observations should help us understand the influence of the parameters that control the growth of ice crystals in various systems. PMID:27917410

Functional understanding of the diverse exon-intron structures of human GPCR genes.

PubMed

Hammond, Dorothy A; Olman, Victor; Xu, Ying

2014-02-01

The GPCR genes have a variety of exon-intron structures even though their proteins are all structurally homologous. We have examined all human GPCR genes with at least two functional protein isoforms, totaling 199, aiming to gain an understanding of what may have contributed to the large diversity of the exon-intron structures of the GPCR genes. The 199 genes have a total of 808 known protein splicing isoforms with experimentally verified functions. Our analysis reveals that 1301 (80.6%) adjacent exon-exon pairs out of the total of 1,613 in the 199 genes have either exactly one exon skipped or the intron in-between retained in at least one of the 808 protein splicing isoforms. This observation has a statistical significance p-value of 2.051762 * e(-09), assuming that the observed splicing isoforms are independent of the exon-intron structures. Our interpretation of this observation is that the exon boundaries of the GPCR genes are not randomly determined; instead they may be selected to facilitate specific alternative splicing for functional purposes.

Time-Lapse, in Situ Imaging of Ice Crystal Growth Using Confocal Microscopy.

PubMed

Marcellini, Moreno; Noirjean, Cecile; Dedovets, Dmytro; Maria, Juliette; Deville, Sylvain

2016-11-30

Ice crystals nucleate and grow when a water solution is cooled below its freezing point. The growth velocities and morphologies of the ice crystals depend on many parameters, such as the temperature of ice growth, the melting temperature, and the interactions of solutes with the growing crystals. Three types of morphologies may appear: dendritic, cellular (or fingerlike), or the faceted equilibrium form. Understanding and controlling which type of morphology is formed is essential in several domains, from biology to geophysics and materials science. Obtaining, in situ, three dimensional observations without introducing artifacts due to the experimental technique is nevertheless challenging. Here we show how we can use laser scanning confocal microscopy to follow in real-time the growth of smoothed and faceted ice crystals in zirconium acetate solutions. Both qualitative and quantitative observations can be made. In particular, we can precisely measure the lateral growth velocity of the crystals, a measure otherwise difficult to obtain. Such observations should help us understand the influence of the parameters that control the growth of ice crystals in various systems.

Measurement of the Transverse Single-Spin Asymmetry in p ↑ + p → W ± / Z 0 at RHIC

DOE PAGES

Adamczyk, L.; Adkins, J. K.; Agakishiev, G.; ...

2016-04-01

In this paper, we present the measurement of the transverse single-spin asymmetry of weak boson production in transversely polarized proton-proton collisions at √s = 500 GeV by the STAR experiment at RHIC. The measured observable is sensitive to the Sivers function, one of the transverse-momentum-dependent parton distribution functions, which is predicted to have the opposite sign in proton-proton collisions from that observed in deep inelastic lepton-proton scattering. In conclusion, these data provide the first experimental investigation of the nonuniversality of the Sivers function, fundamental to our understanding of QCD.

Experimental testing of scattering polarization models

NASA Astrophysics Data System (ADS)

Li, Wenxian; Casini, Roberto; Tomczyk, Steven; Landi Degl'Innocenti, Egidio; Marsell, Brandan

2018-06-01

We realized a laboratory experiment to study the polarization of the Na I doublet at 589.3 nm, in the presence of a magnetic field. The purpose of the experiment is to test the theory of scattering polarization for illumination conditions typical of astrophysical plasmas. This work was stimulated by solar observations of the Na I doublet that have proven particularly challenging to reproduce with current models of polarized line formation, even casting doubts on our very understanding of the physics of scattering polarization on the Sun. The experiment has confirmed the fundamental correctness of the current theory, and demonstrated that the "enigmatic'' polarization of those observations is exclusively of solar origin.

Interaction Metrics for Feedback Control of Sound Radiation from Stiffened Panels

NASA Technical Reports Server (NTRS)

Cabell, Randolph H.; Cox, David E.; Gibbs, Gary P.

2003-01-01

Interaction metrics developed for the process control industry are used to evaluate decentralized control of sound radiation from bays on an aircraft fuselage. The metrics are applied to experimentally measured frequency response data from a model of an aircraft fuselage. The purpose is to understand how coupling between multiple bays of the fuselage can destabilize or limit the performance of a decentralized active noise control system. The metrics quantitatively verify observations from a previous experiment, in which decentralized controllers performed worse than centralized controllers. The metrics do not appear to be useful for explaining control spillover which was observed in a previous experiment.

Design optimization of a brush turbine with a cleaner/water based solution

NASA Technical Reports Server (NTRS)

Kim, Rhyn H.

1995-01-01

Recently, a turbine-brush was analyzed based on the energy conservation and the force momentum equation with an empirical relationship of the drag coefficient. An equation was derived to predict the rotational speed of the turbine-brush in terms of the blade angle, number of blades, rest of geometries of the turbine-brush and the incoming velocity. Using the observed flow conditions, drag coefficients were determined. Based on the experimental values as boundary conditions, the turbine-brush flows were numerically simulated to understand first the nature of the flows, and to extend the observed drag coefficient to a flow without holding the turbine-brush.

Bistability in Josephson Junction array resonator

NASA Astrophysics Data System (ADS)

Muppalla, Phani Raja; Alexandre Blais Collaboration; Christian Kraglund Andersen Collaboration; Ioan Pop, Lukas Gruenhaupt Collaboration; Michel Devoret Collaboration; Oscar Garguilo, Gerhard Kirchmair Team

``We present an experimental analysis of the Kerr effect of extended plasma resonances in a 1000 Josephson junction (JJ) chain resonator inside a rectangular waveguide. The Kerr effect manifests itself as a frequency shift that depends linearly on the number of photons in a resonant mode. We study the bistable behavior, using a pump probe scheme on two modes of the JJ array, exploiting the Cross-Kerr effect in our system. In order to understand the behavior of the bi-stability we perform continuous time measurements to observe the switching between the two metastable states. We observe a strong dependence of the switching rates on the photon number and the drive frequency.''

A study on dynamic heat assisted magnetization reversal mechanisms under insufficient reversal field conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Y. J.; Yang, H. Z.; Leong, S. H.

2014-10-20

We report an experimental study on the dynamic thermomagnetic (TM) reversal mechanisms at around Curie temperature (Tc) for isolated 60 nm pitch single-domain [Co/Pd] islands heated by a 1.5 μm spot size laser pulse under an applied magnetic reversal field (Hr). Magnetic force microscopy (MFM) observations with high resolution MFM tips clearly showed randomly trapped non-switched islands within the laser irradiated spot after dynamic TM reversal process with insufficient Hr strength. This observation provides direct experimental evidence by MFM of a large magnetization switching variation due to increased thermal fluctuation/agitation over magnetization energy at the elevated temperature of around Tc. The averagemore » percentage of non-switched islands/magnetization was further found to be inversely proportional to the applied reversal field Hr for incomplete magnetization reversal when Hr is less than 13% of the island coercivity (Hc), showing an increased switching field distribution (SFD) at elevated temperature of around Tc (where main contributions to SFD broadening are from Tc distribution and stronger thermal fluctuations). Our experimental study and results provide better understanding and insight on practical heat assisted magnetic recording (HAMR) process and recording performance, including HAMR writing magnetization dynamics induced SFD as well as associated DC saturation noise that limits areal density, as were previously observed and investigated by theoretical simulations.« less

Quantum Optics Models of EIT Noise and Power Broadening

NASA Astrophysics Data System (ADS)

Snider, Chad; Crescimanno, Michael; O'Leary, Shannon

2011-04-01

When two coherent beams of light interact with an atom they tend to drive the atom to a non-absorbing state through a process called Electromagnetically Induced Transparency (EIT). If the light's frequency dithers, the atom's state stochastically moves in and out of this non-absorbing state. We describe a simple quantum optics model of this process that captures the essential experimentally observed statistical features of this EIT noise, with a particular emphasis on understanding power broadening.

Bifurcation of quiescent H-mode to a wide pedestal regime in DIII-D and advances in the understanding of edge harmonic oscillations

DOE PAGES

Chen, Xi; Burrell, K. H.; Osborne, T. H.; ...

2017-06-14

New experimental studies and modelling of the coherent edge harmonic oscillation (EHO), which regulates the conventional Quiescent H-mode (QH-mode) edge, validate the proposed hypothesis of edge rotational shear in destabilizing the low-n kink-peeling mode as the additional drive mechanism for the EHO. The observed minimum edge E×B shear required for the EHO decreases linearly with pedestal collisionalitymore » $$\

A numerical study of incompressible juncture flows

NASA Technical Reports Server (NTRS)

Kwak, D.; Rogers, S. E.; Kaul, U. K.; Chang, J. L. C.

1986-01-01

The laminar, steady juncture flow around single or multiple posts mounted between two flat plates is simulated using the three dimensional incompressible Navier-Stokes code, INS3D. The three dimensional separation of the boundary layer and subsequent formation and development of the horseshoe vortex is computed. The computed flow compares favorably with the experimental observation. The recent numerical study to understand and quantify the juncture flow relevant to the Space Shuttle main engine power head is summarized.

Radiocesium interaction with clay minerals: Theory and simulation advances Post-Fukushima.

PubMed

Okumura, Masahiko; Kerisit, Sebastien; Bourg, Ian C; Lammers, Laura N; Ikeda, Takashi; Sassi, Michel; Rosso, Kevin M; Machida, Masahiko

2018-04-14

Insights at the microscopic level of the process of radiocesium adsorption and interaction with clay mineral particles have improved substantially over the past several years, triggered by pressing social issues such as management of huge amounts of waste soil accumulated after the Fukushima Dai-ichi nuclear power plant accident. In particular, computer-based molecular modeling supported by advanced hardware and algorithms has proven to be a powerful approach. Its application can now generally encompass the full complexity of clay particle adsorption sites from basal surfaces to interlayers with inserted water molecules, to edges including fresh and weathered frayed ones. On the other hand, its methodological schemes are now varied from traditional force-field molecular dynamics on large-scale realizations composed of many thousands of atoms including water molecules to first-principles methods on smaller models in rather exacting fashion. In this article, we overview new understanding enabled by simulations across methodological variations, focusing on recent insights that connect with experimental observations, namely: 1) the energy scale for cesium adsorption on the basal surface, 2) progress in understanding the structure of clay edges, which is difficult to probe experimentally, 3) cesium adsorption properties at hydrated interlayer sites, 4) the importance of the size relationship between the ionic radius of cesium and the interlayer distance at frayed edge sites, 5) the migration of cesium into deep interlayer sites, and 6) the effects of nuclear decay of radiocesium. Key experimental observations that motivate these simulation advances are also summarized. Furthermore, some directions toward future solutions of waste soil management are discussed based on the obtained microscopic insights. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Flash sintering of ceramic materials

NASA Astrophysics Data System (ADS)

Dancer, C. E. J.

2016-10-01

During flash sintering, ceramic materials can sinter to high density in a matter of seconds while subjected to electric field and elevated temperature. This process, which occurs at lower furnace temperatures and in shorter times than both conventional ceramic sintering and field-assisted methods such as spark plasma sintering, has the potential to radically reduce the power consumption required for the densification of ceramic materials. This paper reviews the experimental work on flash sintering methods carried out to date, and compares the properties of the materials obtained to those produced by conventional sintering. The flash sintering process is described for oxides of zirconium, yttrium, aluminium, tin, zinc, and titanium; silicon and boron carbide, zirconium diboride, materials for solid oxide fuel applications, ferroelectric materials, and composite materials. While experimental observations have been made on a wide range of materials, understanding of the underlying mechanisms responsible for the onset and latter stages of flash sintering is still elusive. Elements of the proposed theories to explain the observed behaviour include extensive Joule heating throughout the material causing thermal runaway, arrested by the current limitation in the power supply, and the formation of defect avalanches which rapidly and dramatically increase the sample conductivity. Undoubtedly, the flash sintering process is affected by the electric field strength, furnace temperature and current density limit, but also by microstructural features such as the presence of second phase particles or dopants and the particle size in the starting material. While further experimental work and modelling is still required to attain a full understanding capable of predicting the success of the flash sintering process in different materials, the technique non-etheless holds great potential for exceptional control of the ceramic sintering process.

Radiocesium interaction with clay minerals: Theory and simulation advances Post–Fukushima

DOE PAGES

Okumura, Masahiko; Kerisit, Sebastien; Bourg, Ian C.; ...

2018-03-14

Insights at the microscopic level of the process of radiocesium adsorption and interaction with clay mineral particles have improved substantially over the past several years, triggered by pressing social issues such as management of huge amounts of waste soil accumulated after the Fukushima Dai–ichi nuclear power plant accident. In particular, computer–based molecular modeling supported by advanced hardware and algorithms has proven to be a powerful approach. Its application can now generally encompass the full complexity of clay particle adsorption sites from basal surfaces to interlayers with inserted water molecules, to edges including fresh and weathered frayed ones. On the othermore » hand, its methodological schemes are now varied from traditional force–field molecular dynamics on large–scale realizations composed of many thousands of atoms including water molecules to first–principles methods on smaller models in rather exacting fashion. In this article, we overview new understanding enabled by simulations across methodological variations, focusing on recent insights that connect with experimental observations, namely: 1) the energy scale for cesium adsorption on the basal surface, 2) progress in understanding the structure of clay edges, which is difficult to probe experimentally, 3) cesium adsorption properties at hydrated interlayer sites, 4) the importance of the size relationship between the ionic radius of cesium and the interlayer distance at frayed edge sites, 5) the migration of cesium into deep interlayer sites, and 6) the effects of nuclear decay of radiocesium. Key experimental observations that motivate these simulation advances are also summarized. Furthermore, some directions toward future solutions of waste soil management are discussed based on the obtained microscopic insights.« less

Radiocesium interaction with clay minerals: Theory and simulation advances Post–Fukushima

DOE Office of Scientific and Technical Information (OSTI.GOV)

Okumura, Masahiko; Kerisit, Sebastien; Bourg, Ian C.

Insights at the microscopic level of the process of radiocesium adsorption and interaction with clay mineral particles have improved substantially over the past several years, triggered by pressing social issues such as management of huge amounts of waste soil accumulated after the Fukushima Dai–ichi nuclear power plant accident. In particular, computer–based molecular modeling supported by advanced hardware and algorithms has proven to be a powerful approach. Its application can now generally encompass the full complexity of clay particle adsorption sites from basal surfaces to interlayers with inserted water molecules, to edges including fresh and weathered frayed ones. On the othermore » hand, its methodological schemes are now varied from traditional force–field molecular dynamics on large–scale realizations composed of many thousands of atoms including water molecules to first–principles methods on smaller models in rather exacting fashion. In this article, we overview new understanding enabled by simulations across methodological variations, focusing on recent insights that connect with experimental observations, namely: 1) the energy scale for cesium adsorption on the basal surface, 2) progress in understanding the structure of clay edges, which is difficult to probe experimentally, 3) cesium adsorption properties at hydrated interlayer sites, 4) the importance of the size relationship between the ionic radius of cesium and the interlayer distance at frayed edge sites, 5) the migration of cesium into deep interlayer sites, and 6) the effects of nuclear decay of radiocesium. Key experimental observations that motivate these simulation advances are also summarized. Furthermore, some directions toward future solutions of waste soil management are discussed based on the obtained microscopic insights.« less

Simulation and Experimentation in an Astronomy Laboratory, Part II

NASA Astrophysics Data System (ADS)

Maloney, F. P.; Maurone, P. A.; Hones, M.

1995-12-01

The availability of low-cost, high-performance computing hardware and software has transformed the manner by which astronomical concepts can be re-discovered and explored in a laboratory that accompanies an astronomy course for non-scientist students. We report on a strategy for allowing each student to understand fundamental scientific principles by interactively confronting astronomical and physical phenomena, through direct observation and by computer simulation. Direct observation of physical phenomena, such as Hooke's Law, begins by using a computer and hardware interface as a data-collection and presentation tool. In this way, the student is encouraged to explore the physical conditions of the experiment and re-discover the fundamentals involved. The hardware frees the student from the tedium of manual data collection and presentation, and permits experimental design which utilizes data that would otherwise be too fleeting, too imprecise, or too voluminous. Computer simulation of astronomical phenomena allows the student to travel in time and space, freed from the vagaries of weather, to re-discover such phenomena as the daily and yearly cycles, the reason for the seasons, the saros, and Kepler's Laws. By integrating the knowledge gained by experimentation and simulation, the student can understand both the scientific concepts and the methods by which they are discovered and explored. Further, students are encouraged to place these discoveries in an historical context, by discovering, for example, the night sky as seen by the survivors of the sinking Titanic, or Halley's comet as depicted on the Bayeux tapestry. We report on the continuing development of these laboratory experiments. Futher details and the text for the experiments are available at the following site: http://astro4.ast.vill.edu/ This work is supported by a grant from The Pew Charitable Trusts.

Predictive characterization of aging and degradation of reactor materials in extreme environments. Final report, December 20, 2013 - September 20, 2017

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qu, Jianmin

Understanding of reactor material behavior in extreme environments is vital not only to the development of new materials for the next generation nuclear reactors, but also to the extension of the operating lifetimes of the current fleet of nuclear reactors. To this end, this project conducted a suite of unique experimental techniques, augmented by a mesoscale computational framework, to understand and predict the long-term effects of irradiation, temperature, and stress on material microstructures and their macroscopic behavior. The experimental techniques and computational tools were demonstrated on two distinctive types of reactor materials, namely, Zr alloys and high-Cr martensitic steels. Thesemore » materials are chosen as the test beds because they are the archetypes of high-performance reactor materials (cladding, wrappers, ducts, pressure vessel, piping, etc.). To fill the knowledge gaps, and to meet the technology needs, a suite of innovative in situ transmission electron microscopy (TEM) characterization techniques (heating, heavy ion irradiation, He implantation, quantitative small-scale mechanical testing, and various combinations thereof) were developed and used to elucidate and map the fundamental mechanisms of microstructure evolution in both Zr and Cr alloys for a wide range environmental boundary conditions in the thermal-mechanical-irradiation input space. Knowledge gained from the experimental observations of the active mechanisms and the role of local microstructural defects on the response of the material has been incorporated into a mathematically rigorous and comprehensive three-dimensional mesoscale framework capable of accounting for the compositional variation, microstructural evolution and localized deformation (radiation damage) to predict aging and degradation of key reactor materials operating in extreme environments. Predictions from this mesoscale framework were compared with the in situ TEM observations to validate the model.« less

Using experimental and computational energy equilibration to understand hierarchical self-assembly of Fmoc-dipeptide amphiphiles.

PubMed

Sasselli, I R; Pappas, C G; Matthews, E; Wang, T; Hunt, N T; Ulijn, R V; Tuttle, T

2016-10-12

Despite progress, a fundamental understanding of the relationships between the molecular structure and self-assembly configuration of Fmoc-dipeptides is still in its infancy. In this work, we provide a combined experimental and computational approach that makes use of free energy equilibration of a number of related Fmoc-dipeptides to arrive at an atomistic model of Fmoc-threonine-phenylalanine-amide (Fmoc-TF-NH 2 ) which forms twisted fibres. By using dynamic peptide libraries where closely related dipeptide sequences are dynamically exchanged to eventually favour the formation of the thermodynamically most stable configuration, the relative importance of C-terminus modifications (amide versus methyl ester) and contributions of aliphatic versus aromatic amino acids (phenylalanine F vs. leucine L) is determined (F > L and NH 2 > OMe). The approach enables a comparative interpretation of spectroscopic data, which can then be used to aid the construction of the atomistic model of the most stable structure (Fmoc-TF-NH 2 ). The comparison of the relative stabilities of the models using molecular dynamic simulations and the correlation with experimental data using dynamic peptide libraries and a range of spectroscopy methods (FTIR, CD, fluorescence) allow for the determination of the nanostructure with atomistic resolution. The final model obtained through this process is able to reproduce the experimentally observed formation of intertwining fibres for Fmoc-TF-NH 2 , providing information of the interactions involved in the hierarchical supramolecular self-assembly. The developed methodology and approach should be of general use for the characterization of supramolecular structures.

Experimental predictions drawn from a computational model of sign-trackers and goal-trackers.

PubMed

Lesaint, Florian; Sigaud, Olivier; Clark, Jeremy J; Flagel, Shelly B; Khamassi, Mehdi

2015-01-01

Gaining a better understanding of the biological mechanisms underlying the individual variation observed in response to rewards and reward cues could help to identify and treat individuals more prone to disorders of impulsive control, such as addiction. Variation in response to reward cues is captured in rats undergoing autoshaping experiments where the appearance of a lever precedes food delivery. Although no response is required for food to be delivered, some rats (goal-trackers) learn to approach and avidly engage the magazine until food delivery, whereas other rats (sign-trackers) come to approach and engage avidly the lever. The impulsive and often maladaptive characteristics of the latter response are reminiscent of addictive behaviour in humans. In a previous article, we developed a computational model accounting for a set of experimental data regarding sign-trackers and goal-trackers. Here we show new simulations of the model to draw experimental predictions that could help further validate or refute the model. In particular, we apply the model to new experimental protocols such as injecting flupentixol locally into the core of the nucleus accumbens rather than systemically, and lesioning of the core of the nucleus accumbens before or after conditioning. In addition, we discuss the possibility of removing the food magazine during the inter-trial interval. The predictions from this revised model will help us better understand the role of different brain regions in the behaviours expressed by sign-trackers and goal-trackers. Copyright © 2014 Elsevier Ltd. All rights reserved.

The dynamic failure behavior of tungsten heavy alloys subjected to transverse loads

NASA Astrophysics Data System (ADS)

Tarcza, Kenneth Robert

Tungsten heavy alloys (WHA), a category of particulate composites used in defense applications as kinetic energy penetrators, have been studied for many years. Even so, their dynamic failure behavior is not fully understood and cannot be predicted by numerical models presently in use. In this experimental investigation, a comprehensive understanding of the high-rate transverse-loading fracture behavior of WHA has been developed. Dynamic fracture events spanning a range of strain rates and loading conditions were created via mechanical testing and used to determine the influence of surface condition and microstructure on damage initiation, accumulation, and sample failure under different loading conditions. Using standard scanning electron microscopy metallographic and fractographic techniques, sample surface condition is shown to be extremely influential to the manner in which WHA fails, causing a fundamental change from externally to internally nucleated failures as surface condition is improved. Surface condition is characterized using electron microscopy and surface profilometry. Fracture surface analysis is conducted using electron microscopy, and linear elastic fracture mechanics is used to understand the influence of surface condition, specifically initial flaw size, on sample failure behavior. Loading conditions leading to failure are deduced from numerical modeling and experimental observation. The results highlight parameters and considerations critical to the understanding of dynamic WHA fracture and the development of dynamic WHA failure models.

Synaptic Transmission Optimization Predicts Expression Loci of Long-Term Plasticity.

PubMed

Costa, Rui Ponte; Padamsey, Zahid; D'Amour, James A; Emptage, Nigel J; Froemke, Robert C; Vogels, Tim P

2017-09-27

Long-term modifications of neuronal connections are critical for reliable memory storage in the brain. However, their locus of expression-pre- or postsynaptic-is highly variable. Here we introduce a theoretical framework in which long-term plasticity performs an optimization of the postsynaptic response statistics toward a given mean with minimal variance. Consequently, the state of the synapse at the time of plasticity induction determines the ratio of pre- and postsynaptic modifications. Our theory explains the experimentally observed expression loci of the hippocampal and neocortical synaptic potentiation studies we examined. Moreover, the theory predicts presynaptic expression of long-term depression, consistent with experimental observations. At inhibitory synapses, the theory suggests a statistically efficient excitatory-inhibitory balance in which changes in inhibitory postsynaptic response statistics specifically target the mean excitation. Our results provide a unifying theory for understanding the expression mechanisms and functions of long-term synaptic transmission plasticity. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Experimental observation of acoustic sub-harmonic diffraction by a grating

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Jingfei, E-mail: benjamin.jf.liu@gatech.edu; Declercq, Nico F., E-mail: declercqdepatin@gatech.edu

2014-06-28

A diffraction grating is a spatial filter causing sound waves or optical waves to reflect in directions determined by the frequency of the waves and the period of the grating. The classical grating equation is the governing principle that has successfully described the diffraction phenomena caused by gratings. However, in this work, we show experimental observation of the so-called sub-harmonic diffraction in acoustics that cannot be explained by the classical grating equation. Experiments indicate two physical phenomena causing the effect: internal scattering effects within the corrugation causing a phase shift and nonlinear acoustic effects generating new frequencies. This discovery expandsmore » our current understanding of the diffraction phenomenon, and it also makes it possible to better design spatial diffraction spectra, such as a rainbow effect in optics with a more complicated color spectrum than a traditional rainbow. The discovery reveals also a possibly new technique to study nonlinear acoustics by exploitation of the natural spatial filtering effect inherent to an acoustic diffraction grating.« less

Molecular Mechanisms in the shock induced decomposition of FOX-7

NASA Astrophysics Data System (ADS)

Mishra, Ankit; Tiwari, Subodh C.; Nakano, Aiichiro; Vashishta, Priya; Kalia, Rajiv; CACS Team

Experimental and first principle computational studies on FOX 7 have either involved a very small system consisting of a few atoms or they did not take into account the decomposition mechanisms under extreme conditions of temperature and pressure. We have performed a large-scale reactive MD simulation using ReaxFF-lg force field to study the shock decomposition of FOX 7. The chemical composition of the principal decomposition products correlates well with experimental observations. Furthermore, we observed that the production of N2 and H2O was inter molecular in nature and was through different chemical pathways. Moreover, the production of CO and CO2 was delayed due to production of large stable C,O atoms cluster. These critical insights into the initial processes involved in the shock induced decomposition of FOX-7 will greatly help in understanding the factors playing an important role in the insensitiveness of this high energy material. This research is supported by AFOSR Award No. FA9550-16-1-0042.

Shaft instantaneous angular speed for blade vibration in rotating machine

NASA Astrophysics Data System (ADS)

Gubran, Ahmed A.; Sinha, Jyoti K.

2014-02-01

Reliable blade health monitoring (BHM) in rotating machines like steam turbines and gas turbines, is a topic of research since decades to reduce machine down time, maintenance costs and to maintain the overall safety. Transverse blade vibration is often transmitted to the shaft as torsional vibration. The shaft instantaneous angular speed (IAS) is nothing but the representing the shaft torsional vibration. Hence the shaft IAS has been extracted from the measured encoder data during machine run-up to understand the blade vibration and to explore the possibility of reliable assessment of blade health. A number of experiments on an experimental rig with a bladed disk were conducted with healthy but mistuned blades and with different faults simulation in the blades. The measured shaft torsional vibration shows a distinct difference between the healthy and the faulty blade conditions. Hence, the observations are useful for the BHM in future. The paper presents the experimental setup, simulation of blade faults, experiments conducted, observations and results.

Examining Neuronal Connectivity and Its Role in Learning and Memory

NASA Astrophysics Data System (ADS)

Gala, Rohan

Learning and long-term memory formation are accompanied with changes in the patterns and weights of synaptic connections in the underlying neuronal network. However, the fundamental rules that drive connectivity changes, and the precise structure-function relationships within neuronal networks remain elusive. Technological improvements over the last few decades have enabled the observation of large but specific subsets of neurons and their connections in unprecedented detail. Devising robust and automated computational methods is critical to distill information from ever-increasing volumes of raw experimental data. Moreover, statistical models and theoretical frameworks are required to interpret the data and assemble evidence into understanding of brain function. In this thesis, I first describe computational methods to reconstruct connectivity based on light microscopy imaging experiments. Next, I use these methods to quantify structural changes in connectivity based on in vivo time-lapse imaging experiments. Finally, I present a theoretical model of associative learning that can explain many stereotypical features of experimentally observed connectivity.

An Autonomous System for Experimental Evolution of Microbial Cultures: Test Results Using Ultraviolet-C Radiation and Escherichia Coli.

NASA Technical Reports Server (NTRS)

Ouandji, Cynthia; Wang, Jonathan; Arismendi, Dillon; Lee, Alonzo; Blaich, Justin; Gentry, Diana

2017-01-01

At its core, the field of microbial experimental evolution seeks to elucidate the natural laws governing the history of microbial life by understanding its underlying driving mechanisms. However, observing evolution in nature is complex, as environmental conditions are difficult to control. Laboratory-based experiments for observing population evolution provide more control, but manually culturing and studying multiple generations of microorganisms can be time consuming, labor intensive, and prone to inconsistency. We have constructed a prototype, closed system device that automates the process of directed evolution experiments in microorganisms. It is compatible with any liquid microbial culture, including polycultures and field samples, provides flow control and adjustable agitation, continuously monitors optical density (OD), and can dynamically control environmental pressures such as ultraviolet-C (UV-C) radiation and temperature. Here, the results of the prototype are compared to iterative exposure and survival assays conducted using a traditional hood, UV-C lamp, and shutter system.

Characterization of azimuthal and longitudinal modes in rolled-up InGaAs/GaAs microtubes at telecom wavelengths.

PubMed

Zhong, Qiuhang; Tian, Zhaobing; Dastjerdi, M Hadi Tavakoli; Mi, Zetian; Plant, David V

2013-08-12

We report on theoretical and experimental investigation of azimuthal and longitudinal modes in rolled-up microtubes at telecom wavelengths. These microtubes are fabricated by selectively releasing a coherently strained InGaAs/GaAs bilayer. We apply planar waveguide method and a quasi-potential model to analyze the azimuthal and longitudinal modes in the microtubes near 1550 nm. Then we demonstrate these modes in transmission spectrum by evanescent light coupling. The experimental observations agree well with the calculated results. Surface-scattering-induced mode splitting is also observed in both transmission and reflection spectra at ~1600 nm. The mode splitting is in essence the non-degeneracy of clockwise and counter-clockwise whispering-gallery modes of the microtubes. This study is significant for understanding the physics of modes in microtubes and other microcavities with three-dimensional optical confinement, as well as for potential applications such as microtube-based photonic integrated devices and sensing purposes.

Experience on divertor fuel retention after two ITER-Like Wall campaigns

NASA Astrophysics Data System (ADS)

Heinola, K.; Widdowson, A.; Likonen, J.; Ahlgren, T.; Alves, E.; Ayres, C. F.; Baron-Wiechec, A.; Barradas, N.; Brezinsek, S.; Catarino, N.; Coad, P.; Guillemaut, C.; Jepu, I.; Krat, S.; Lahtinen, A.; Matthews, G. F.; Mayer, M.; Contributors, JET

2017-12-01

The JET ITER-Like Wall experiment, with its all-metal plasma-facing components, provides a unique environment for plasma and plasma-wall interaction studies. These studies are of great importance in understanding the underlying phenomena taking place during the operation of a future fusion reactor. Present work summarizes and reports the plasma fuel retention in the divertor resulting from the two first experimental campaigns with the ITER-Like Wall. The deposition pattern in the divertor after the second campaign shows same trend as was observed after the first campaign: highest deposition of 10-15 μm was found on the top part of the inner divertor. Due to the change in plasma magnetic configurations from the first to the second campaign, and the resulted strike point locations, an increase of deposition was observed on the base of the divertor. The deuterium retention was found to be affected by the hydrogen plasma experiments done at the end of second experimental campaign.

Prosocial behavior and gender

PubMed Central

Espinosa, María Paz; Kovářík, Jaromír

2015-01-01

This study revisits different experimental data sets that explore social behavior in economic games and uncovers that many treatment effects may be gender-specific. In general, men and women do not differ in “neutral” baselines. However, we find that social framing tends to reinforce prosocial behavior in women but not men, whereas encouraging reflection decreases the prosociality of males but not females. The treatment effects are sometimes statistically different across genders and sometimes not but never go in the opposite direction. These findings suggest that (i) the social behavior of both sexes is malleable but each gender responds to different aspects of the social context; and (ii) gender differences observed in some studies might be the result of particular features of the experimental design. Our results contribute to the literature on prosocial behavior and may improve our understanding of the origins of human prosociality. We discuss the possible link between the observed differential treatment effects across genders and the differing male and female brain network connectivity, documented in recent neural studies. PMID:25926783

Self-hybridization within non-Hermitian localized plasmonic systems

NASA Astrophysics Data System (ADS)

Lourenço-Martins, Hugo; Das, Pabitra; Tizei, Luiz H. G.; Weil, Raphaël; Kociak, Mathieu

2018-04-01

The orthogonal eigenmodes are well-defined solutions of Hermitian equations describing many physical situations from quantum mechanics to acoustics. However, a large variety of non-Hermitian problems, including gravitational waves close to black holes or leaky electromagnetic cavities, require the use of a bi-orthogonal eigenbasis with consequences challenging our physical understanding1-4. The need to compensate for energy losses made the few successful attempts5-8 to experimentally probe non-Hermiticity extremely complicated. We overcome this problem by considering localized plasmonic systems. As the non-Hermiticity in these systems does not stem from temporal invariance breaking but from spatial symmetry breaking, its consequences can be observed more easily. We report on the theoretical and experimental evidence for non-Hermiticity-induced strong coupling between surface plasmon modes of different orders within silver nanodaggers. The symmetry conditions for triggering this counter-intuitive self-hybridization phenomenon are provided. Similar observable effects are expected to exist in any system exhibiting bi-orthogonal eigenmodes.

Experimental Investigation of Mechanical and Thermal Properties of Silica Nanoparticle-Reinforced Poly(acrylamide) Nanocomposite Hydrogels

PubMed Central

O’Brien, Victor; Chang, Andrew; Blanco, Matthew; Zabalegui, Aitor; Lee, Hohyun; Asuri, Prashanth

2015-01-01

Current studies investigating properties of nanoparticle-reinforced polymers have shown that nanocomposites often exhibit improved properties compared to neat polymers. However, over two decades of research, using both experimental studies and modeling analyses, has not fully elucidated the mechanistic underpinnings behind these enhancements. Moreover, few studies have focused on developing an understanding among two or more polymer properties affected by incorporation of nanomaterials. In our study, we investigated the elastic and thermal properties of poly(acrylamide) hydrogels containing silica nanoparticles. Both nanoparticle concentration and size affected hydrogel properties, with similar trends in enhancements observed for elastic modulus and thermal diffusivity. We also observed significantly lower swellability for hydrogel nanocomposites relative to neat hydrogels, consistent with previous work suggesting that nanoparticles can mediate pseudo crosslinking within polymer networks. Collectively, these results indicate the ability to develop next-generation composite materials with enhanced mechanical and thermal properties by increasing the average crosslinking density using nanoparticles. PMID:26301505

Origin of the broad three-terminal Hanle signals in Fe/SiO{sub 2}/Si tunnel junctions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sato, Shoichi; Tanaka, Masaaki; Nakane, Ryosho

2015-07-20

Lorentzian-shaped broader three-terminal Hanle (B-3TH) signals are observed in Fe/SiO{sub 2}/Si tunnel junction devices at 6–300 K. We propose a spin conducting model, which explains all the characteristics of our experimental results, such as field angle dependence and bias dependence of the B-3TH signals, as well as experimental results reported by other groups. It was found that the shape of the B-3TH signals is determined by the spin depolarization at the Fe/SiO{sub 2} interface caused by local magnetic fields, unlike the conventional understanding. The shape of the B-3TH signals, including narrower and inverted Hanle signals, reflects the magnetic order of anmore » ultrathin paramagnetic layer formed at the Fe/SiO{sub 2} interface. Our model provides a unified explanation of the B-3TH signals observed in three-terminal Hanle measurements.« less

The Chemical Shift Baseline for High-Pressure NMR Spectra of Proteins.

PubMed

Frach, Roland; Kibies, Patrick; Böttcher, Saraphina; Pongratz, Tim; Strohfeldt, Steven; Kurrmann, Simon; Koehler, Joerg; Hofmann, Martin; Kremer, Werner; Kalbitzer, Hans Robert; Reiser, Oliver; Horinek, Dominik; Kast, Stefan M

2016-07-18

High-pressure (HP) NMR spectroscopy is an important method for detecting rare functional states of proteins by analyzing the pressure response of chemical shifts. However, for the analysis of the shifts it is mandatory to understand the origin of the observed pressure dependence. Here we present experimental HP NMR data on the (15) N-enriched peptide bond model, N-methylacetamide (NMA), in water, combined with quantum-chemical computations of the magnetic parameters using a pressure-sensitive solvation model. Theoretical analysis of NMA and the experimentally used internal reference standard 4,4-dimethyl-4-silapentane-1-sulfonic (DSS) reveal that a substantial part of observed shifts can be attributed to purely solvent-induced electronic polarization of the backbone. DSS is only marginally responsive to pressure changes and is therefore a reliable sensor for variations in the local magnetic field caused by pressure-induced changes of the magnetic susceptibility of the solvent. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Phonon thermodynamics of iron and cementite

NASA Astrophysics Data System (ADS)

Mauger, Lisa Mary

The vibrational properties of materials are essential to understanding material stability and thermodynamics. In this thesis I outline vibrational thermodynamic models and the experimental tools that provide evidence on phonon behavior. The introductory section discusses the history of metallurgy and thermodynamic theory, with an emphasis on the role of iron and cementite, two important components of steels. The thermodynamic framework for understanding vibrational material behavior is provided alongside the growing body of experimental and computational tools that provide physical insight on vibrational properties. The high temperature vibrational behavior of iron and cementite are explored within this context in the final chapters. Body-centered-cubic iron exhibits decreasing phonon energies at elevated temperatures. The observed energy change in not uniform across phonon modes in iron, and specific phonon modes show significant decreases in energy that are not explained by simple vibrational models. This anomalously energy decrease is linked to the second-nearest-neighbor interactions in the bcc structure, through examination of fitted interatomic force constants. The large changes in phonon energy result in a significant increase in the vibrational entropy, called the nonharmonic vibrational entropy, which emulates the temperature behavior of the magnetic entropy across the Curie temperature. The nonharmonic vibrational entropy is attributed to interactions between the vibrations and state of magnetic disorder in the material, which persists above the magnetic transitions and extends the stability region of the bcc phase. Orthorombic cementite, Fe3C, exhibits anisotropic magneto-volume behavior in the ferromagnetic phase including regions very low thermal expansion. The phonon modes of cementite show anomalous temperature dependence, with low energy phonon modes increasing their energy at elevated temperatures in the ferromagnetic phase. This behavior is reversed after the magnetic transition and these same phonon modes lower their energies with temperature, consistent with observed thermal expansion. This atypical phonon behavior lowers the vibrational entropy of cementite up to the Curie temperature. The experimentally observed increase in low energy acoustic phonons affects the elastic behavior of Fe3C, increasing the isotropy of elastic response. First principles calculations link the observed phonon energy increases to specific vibrational modes that are polarized along the b-axis, which aligns with the closest Fe-Fe bonding direction. The nonharmonic behavior of the vibrational modes are discussed in the context of other observations of anomalous anisotropic magneto-volume behavior in Fe3C.

Influence of student-designed experiments with fast plants on their understanding of plants and of scientific inquiry

NASA Astrophysics Data System (ADS)

Akey, Ann Kosek

2000-10-01

This dissertation investigates the influence of student designed experiments with Fast Plants in an undergraduate agroecology course on the students' conceptual understanding of plant life cycles and on their procedural understanding of scientific experimentation. It also considers students' perspectives on the value of these experiences. Data sources included semi-structured interviews with students and the instructor, a written task, course evaluations, and observations of class meetings. Students came into the course having strong practical experience with plants from their agricultural backgrounds. Students did not always connect aspects of plant biology that they studied in class, particularly respiration and photosynthesis, to plant growth requirements. The instructor was able to bridge the gap between some practical knowledge and textbook knowledge with experiences other than the Fast Plant project. Most students held an incomplete picture of plant reproduction that was complicated by differences between agricultural and scientific vocabulary. There is need for teaching approaches that help students tie together their knowledge of plants into a cohesive framework. Experiences that help students draw on their background knowledge related to plants, and which give students the opportunity to examine and discuss their ideas, may help students make more meaningful connections. The Fast Plant project, a positive experience for most students, was seen by these undergraduate students as being more helpful in learning about scientific experimentation than about plants. The process of designing and carrying out their own experiments gave students insight into experimentation, provoked their curiosity, and resulted in a sense of ownership and accomplishment.

Four Years of Farmer Experimentation on Soil Fertility in Tigray, Northern Ethiopia: Trends in Research Strategies

ERIC Educational Resources Information Center

Kraaijvanger, Richard G.; Veldkamp, Tom

2017-01-01

Purpose: This paper analyses research strategies followed by farmer groups in Tigray, that were involved in participatory experimentation. Understanding choices made by farmers in such experimentation processes is important to understand reasons why farmers in Tigray often hesitated to adopt recommended practices. Design/Methodology/Approach: A…

Precession of a rapidly rotating cylinder flow: traverse through resonance

NASA Astrophysics Data System (ADS)

Lopez, Juan; Marques, Francisco

2014-11-01

The flow in a rapidly rotating cylinder that is titled and also rotating around another axis can undergo sudden transitions to turbulence. Experimental observations of this have been associated with triadic resonances. The experimental and theoretical results are well-established in the literature, but there remains a lack of understanding of the physical mechanisms at play in the sudden transition from laminar to turbulent flow with very small variations in the governing parameters. Here, we present direct numerical simulations of a traverse in parameter space through an isolated resonance, and describe in detail the bifurcations involved in the sudden transition. U.S. National Science Foundation Grant CBET-1336410 and Spanish Ministry of Education and Science Grant (with FEDER funds) FIS2013-40880.

Two-Dimensional Self-Consistent Radio Frequency Plasma Simulations Relevant to the Gaseous Electronics Conference RF Reference Cell

PubMed Central

Lymberopoulos, Dimitris P.; Economou, Demetre J.

1995-01-01

Over the past few years multidimensional self-consistent plasma simulations including complex chemistry have been developed which are promising tools for furthering our understanding of reactive gas plasmas and for reactor design and optimization. These simulations must be benchmarked against experimental data obtained in well-characterized systems such as the Gaseous Electronics Conference (GEC) reference cell. Two-dimensional simulations relevant to the GEC Cell are reviewed in this paper with emphasis on fluid simulations. Important features observed experimentally, such as off-axis maxima in the charge density and hot spots of metastable species density near the electrode edges in capacitively-coupled GEC cells, have been captured by these simulations. PMID:29151756

Using dust as probes to determine sheath extent and structure

NASA Astrophysics Data System (ADS)

Douglass, Angela; Land, V.; Qiao, K.; Matthews, L.; Hyde, T.

2016-08-01

Two in situ experimental methods are presented in which dust particles are used to determine the extent of the sheath and gain information about the time-averaged electric force profile within a radio frequency (RF) plasma sheath. These methods are advantageous because they are not only simple and quick to carry out, but they also can be performed using standard dusty plasma experimental equipment. In the first method, dust particles are tracked as they fall through the plasma towards the lower electrode. These trajectories are then used to determine the electric force on the particle as a function of height as well as the extent of the sheath. In the second method, dust particle levitation height is measured across a wide range of RF voltages. Similarities were observed between the two experiments, but in order to understand the underlying physics behind these observations, the same conditions were replicated using a self-consistent fluid model. Through comparison of the fluid model and experimental results, it is shown that the particles exhibiting a levitation height that is independent of RF voltage indicate the sheath edge - the boundary between the quasineutral bulk plasma and the sheath. Therefore, both of these simple and inexpensive, yet effective, methods can be applied across a wide range of experimental parameters in any ground-based RF plasma chamber to gain useful information regarding the sheath, which is needed for interpretation of dusty plasma experiments.

Impact of slope inclination on salt accumulation

NASA Astrophysics Data System (ADS)

Nachshon, Uri

2017-04-01

Field measurements indicated on high variability in salt accumulation along natural and cultivated slopes, even for relatively homogeneous soil conditions. It was hypothesised that slope inclination has an impact on the location of salt accumulation along the slope. A set of laboratory experiments and numerical models were used to explore the impact of slope inclination on salt accumulation. It was shown, experimentally, that for conditions of saline water source at the lower boundary of the slope - salt accumulates in low concentrations and homogeneously along the entire slope, for moderate slopes. However, as inclination increases high salt concentrations were observed at the upper parts of the slope, leaving the lower parts of the slope relatively free of salt. The traditional flow and transport models did not predict the experimental observations as they indicated also for the moderate slopes on salt accumulation in the elevated parts of the slope, away of the saline water source. Consequently - a conceptual model was raised to explain the laboratory observations. It was suggested that the interactions between slope angle, evaporation rates, hydraulic conductivity of the medium and distribution of wetness along the slope affect the saline water flow path through the medium. This lead to preferential flow path close to the soil-atmosphere interface for the steep slopes, which leads to constant wash of the salts from the evaporation front upward towards the slope upper parts, whereas for the moderate slopes, flow path is below the soil-atmosphere interface, therefore salt that accumulates at the evaporation front is not being transported upward. Understanding of salt dynamics along slopes is important for agricultural and natural environments, as well as for civil engineering purposes. Better understanding of the salt transport processes along slopes will improve our ability to minimize and to cope with soil salinization processes. The laboratory experiments and the new conceptual model fit the field observations and may explain the high variability of salt accumulation along slopes as observed in the field.

Prompt ionization in the CRIT II barium releases. [Critical Ionization Tests

NASA Technical Reports Server (NTRS)

Torbert, R. B.; Kletzing, C. A.; Liou, K.; Rau, D.

1992-01-01

Observations of electron and ion distributions inside a fast neutral barium jet in the ionosphere show significant fluxes within 4 km of release, presumably related to beam plasma instability processes involved in the Critical Ionization Velocity (CIV) effect. Electron fluxes exceeding 5 x 10 exp 12/sq cm-str-sec-keV were responsible for ionizing both the streaming barium and ambient oxygen. Resulting ion fluxes seem to be consistent with 1-2 percent ionization of the fast barium, as reported by optical observations, although the extended spatial distribution of the optically observed ions is difficult to reconcile with the in situ observations. When the perpendicular velocity of the neutrals falls below critical values, these processes shut off. Although these observations resemble the earlier Porcupine experimental results (Haerendel, 1982), theoretical understanding of the differences between these data and that of earlier negative experiments is still lacking.

Sulphate partitioning into calcite: Experimental verification of pH control and application to seasonality in speleothems

NASA Astrophysics Data System (ADS)

Wynn, Peter M.; Fairchild, Ian J.; Borsato, Andrea; Spötl, Christoph; Hartland, Adam; Baker, Andy; Frisia, Silvia; Baldini, James U. L.

2018-04-01

Carbonate-associated sulphate (CAS) is a useful carrier of palaeoenvironmental information throughout the geologic record, particularly through its stable isotope composition. However, a paucity of experimental data restricts quantitative understanding of sulphate incorporation into carbonates, and consequently CAS concentrations and their diagenetic modifications are rarely interpreted. However, in the case of calcite speleothems, the remarkably high-resolution CAS records which are obtainable via modern microanalytical techniques represent a potentially invaluable source of palaeoenvironmental information. Here, we describe the results of controlled experiments of sulphate co-precipitation with calcite in freshwater solutions where pH, saturation state, and sulphate concentration were varied independently of each other. Solution pH is confirmed as the principal control on sulphate incorporation into calcite. The relative efficiency of incorporation was calculated as a partition coefficient DSO4 = (mSO4/mCO3)solid/(mSO4/mCO3)solution. High crystal growth rates (driven by either pH or saturation state) encouraged higher values of DSO4 because of an increasing concentration of defect sites on crystal surfaces. At low growth rates, DSO4 was reduced due to an inferred competition between sulphate and bicarbonate at the calcite surface. These experimental results are applied to understand the incorporation of sulphate into speleothem calcite. The experimentally determined pH-dependence suggests that strong seasonal variations in cave air PCO2 could account for annual cycles in sulphate concentration observed in stalagmites. Our new experimentally determined values of DSO4 were compared with DSO4 values calculated from speleothem-drip water monitoring from two caves within the Austrian and Italian Alps. At Obir cave, Austria, DSO4 (×105) varies between 11.1 (winter) and 9.0 (summer) and the corresponding figures for Ernesto cave, Italy, are 15.4 (winter) and 14.9 (summer). These values approximate predicted DSO4 values based on our chamber experiments containing both low (2 ppm) and high (20 ppm) sulphate concentrations. Our experimental values of DSO4 obtained at crystal growth rates typical of stalagmites, closely match those observed in other cave sites from around the world. This validates the universality of the controls behind DSO4 and will enhance the use of speleothem CAS as a palaeoenvironmental proxy.

Multi-scale hydrometeorological observation and modelling for flash flood understanding

NASA Astrophysics Data System (ADS)

Braud, I.; Ayral, P.-A.; Bouvier, C.; Branger, F.; Delrieu, G.; Le Coz, J.; Nord, G.; Vandervaere, J.-P.; Anquetin, S.; Adamovic, M.; Andrieu, J.; Batiot, C.; Boudevillain, B.; Brunet, P.; Carreau, J.; Confoland, A.; Didon-Lescot, J.-F.; Domergue, J.-M.; Douvinet, J.; Dramais, G.; Freydier, R.; Gérard, S.; Huza, J.; Leblois, E.; Le Bourgeois, O.; Le Boursicaud, R.; Marchand, P.; Martin, P.; Nottale, L.; Patris, N.; Renard, B.; Seidel, J.-L.; Taupin, J.-D.; Vannier, O.; Vincendon, B.; Wijbrans, A.

2014-09-01

This paper presents a coupled observation and modelling strategy aiming at improving the understanding of processes triggering flash floods. This strategy is illustrated for the Mediterranean area using two French catchments (Gard and Ardèche) larger than 2000 km2. The approach is based on the monitoring of nested spatial scales: (1) the hillslope scale, where processes influencing the runoff generation and its concentration can be tackled; (2) the small to medium catchment scale (1-100 km2), where the impact of the network structure and of the spatial variability of rainfall, landscape and initial soil moisture can be quantified; (3) the larger scale (100-1000 km2), where the river routing and flooding processes become important. These observations are part of the HyMeX (HYdrological cycle in the Mediterranean EXperiment) enhanced observation period (EOP), which will last 4 years (2012-2015). In terms of hydrological modelling, the objective is to set up regional-scale models, while addressing small and generally ungauged catchments, which represent the scale of interest for flood risk assessment. Top-down and bottom-up approaches are combined and the models are used as "hypothesis testing" tools by coupling model development with data analyses in order to incrementally evaluate the validity of model hypotheses. The paper first presents the rationale behind the experimental set-up and the instrumentation itself. Second, we discuss the associated modelling strategy. Results illustrate the potential of the approach in advancing our understanding of flash flood processes on various scales.

Multi-scale hydrometeorological observation and modelling for flash-flood understanding

NASA Astrophysics Data System (ADS)

Braud, I.; Ayral, P.-A.; Bouvier, C.; Branger, F.; Delrieu, G.; Le Coz, J.; Nord, G.; Vandervaere, J.-P.; Anquetin, S.; Adamovic, M.; Andrieu, J.; Batiot, C.; Boudevillain, B.; Brunet, P.; Carreau, J.; Confoland, A.; Didon-Lescot, J.-F.; Domergue, J.-M.; Douvinet, J.; Dramais, G.; Freydier, R.; Gérard, S.; Huza, J.; Leblois, E.; Le Bourgeois, O.; Le Boursicaud, R.; Marchand, P.; Martin, P.; Nottale, L.; Patris, N.; Renard, B.; Seidel, J.-L.; Taupin, J.-D.; Vannier, O.; Vincendon, B.; Wijbrans, A.

2014-02-01

This paper presents a coupled observation and modelling strategy aiming at improving the understanding of processes triggering flash floods. This strategy is illustrated for the Mediterranean area using two French catchments (Gard and Ardèche) larger than 2000 km2. The approach is based on the monitoring of nested spatial scales: (1) the hillslope scale, where processes influencing the runoff generation and its concentration can be tackled; (2) the small to medium catchment scale (1-100 km2) where the impact of the network structure and of the spatial variability of rainfall, landscape and initial soil moisture can be quantified; (3) the larger scale (100-1000 km2) where the river routing and flooding processes become important. These observations are part of the HyMeX (Hydrological Cycle in the Mediterranean Experiment) Enhanced Observation Period (EOP) and lasts four years (2012-2015). In terms of hydrological modelling the objective is to set up models at the regional scale, while addressing small and generally ungauged catchments, which is the scale of interest for flooding risk assessment. Top-down and bottom-up approaches are combined and the models are used as "hypothesis testing" tools by coupling model development with data analyses, in order to incrementally evaluate the validity of model hypotheses. The paper first presents the rationale behind the experimental set up and the instrumentation itself. Second, we discuss the associated modelling strategy. Results illustrate the potential of the approach in advancing our understanding of flash flood processes at various scales.

Tumor Types: Understanding Brain Tumors

MedlinePlus

... help provide more accurate analysis and understanding of experimental studies in the lab, as well as better ... recommend radiation and/or chemotherapy. Many clinical trials (experimental treatments) using radiation, chemotherapy, or a combination are ...

Computational Intelligence‐Assisted Understanding of Nature‐Inspired Superhydrophobic Behavior

PubMed Central

Zhang, Xia; Ding, Bei; Dixon, Sebastian C.

2017-01-01

Abstract In recent years, state‐of‐the‐art computational modeling of physical and chemical systems has shown itself to be an invaluable resource in the prediction of the properties and behavior of functional materials. However, construction of a useful computational model for novel systems in both academic and industrial contexts often requires a great depth of physicochemical theory and/or a wealth of empirical data, and a shortage in the availability of either frustrates the modeling process. In this work, computational intelligence is instead used, including artificial neural networks and evolutionary computation, to enhance our understanding of nature‐inspired superhydrophobic behavior. The relationships between experimental parameters (water droplet volume, weight percentage of nanoparticles used in the synthesis of the polymer composite, and distance separating the superhydrophobic surface and the pendant water droplet in adhesive force measurements) and multiple objectives (water droplet contact angle, sliding angle, and adhesive force) are built and weighted. The obtained optimal parameters are consistent with the experimental observations. This new approach to materials modeling has great potential to be applied more generally to aid design, fabrication, and optimization for myriad functional materials. PMID:29375975

Computational Intelligence-Assisted Understanding of Nature-Inspired Superhydrophobic Behavior.

PubMed

Zhang, Xia; Ding, Bei; Cheng, Ran; Dixon, Sebastian C; Lu, Yao

2018-01-01

In recent years, state-of-the-art computational modeling of physical and chemical systems has shown itself to be an invaluable resource in the prediction of the properties and behavior of functional materials. However, construction of a useful computational model for novel systems in both academic and industrial contexts often requires a great depth of physicochemical theory and/or a wealth of empirical data, and a shortage in the availability of either frustrates the modeling process. In this work, computational intelligence is instead used, including artificial neural networks and evolutionary computation, to enhance our understanding of nature-inspired superhydrophobic behavior. The relationships between experimental parameters (water droplet volume, weight percentage of nanoparticles used in the synthesis of the polymer composite, and distance separating the superhydrophobic surface and the pendant water droplet in adhesive force measurements) and multiple objectives (water droplet contact angle, sliding angle, and adhesive force) are built and weighted. The obtained optimal parameters are consistent with the experimental observations. This new approach to materials modeling has great potential to be applied more generally to aid design, fabrication, and optimization for myriad functional materials.

Physical modelling of the nuclear pore complex

PubMed Central

Fassati, Ariberto; Ford, Ian J.; Hoogenboom, Bart W.

2013-01-01

Physically interesting behaviour can arise when soft matter is confined to nanoscale dimensions. A highly relevant biological example of such a phenomenon is the Nuclear Pore Complex (NPC) found perforating the nuclear envelope of eukaryotic cells. In the central conduit of the NPC, of ∼30–60 nm diameter, a disordered network of proteins regulates all macromolecular transport between the nucleus and the cytoplasm. In spite of a wealth of experimental data, the selectivity barrier of the NPC has yet to be explained fully. Experimental and theoretical approaches are complicated by the disordered and heterogeneous nature of the NPC conduit. Modelling approaches have focused on the behaviour of the partially unfolded protein domains in the confined geometry of the NPC conduit, and have demonstrated that within the range of parameters thought relevant for the NPC, widely varying behaviour can be observed. In this review, we summarise recent efforts to physically model the NPC barrier and function. We illustrate how attempts to understand NPC barrier function have employed many different modelling techniques, each of which have contributed to our understanding of the NPC.

Phonon dynamics of graphene on metals

NASA Astrophysics Data System (ADS)

Taleb, Amjad Al; Farías, Daniel

2016-03-01

The study of surface phonon dispersion curves is motivated by the quest for a detailed understanding of the forces between the atoms at the surface and in the bulk. In the case of graphene, additional motivation comes from the fact that thermal conductivity is dominated by contributions from acoustic phonons, while optical phonon properties are essential to understand Raman spectra. In this article, we review recent progress made in the experimental determination of phonon dispersion curves of graphene grown on several single-crystal metal surfaces. The two main experimental techniques usually employed are high-resolution electron energy loss spectroscopy (HREELS) and inelastic helium atom scattering (HAS). The different dispersion branches provide a detailed insight into the graphene-substrate interaction. Softening of optical modes and signatures of the substrate‧s Rayleigh wave are observed for strong graphene-substrate interactions, while acoustic phonon modes resemble those of free-standing graphene for weakly interacting systems. The latter allows determining the bending rigidity and the graphene-substrate coupling strength. A comparison between theory and experiment is discussed for several illustrative examples. Perspectives for future experiments are discussed.

Shoe-Floor Interactions in Human Walking With Slips: Modeling and Experiments.

PubMed

Trkov, Mitja; Yi, Jingang; Liu, Tao; Li, Kang

2018-03-01

Shoe-floor interactions play a crucial role in determining the possibility of potential slip and fall during human walking. Biomechanical and tribological parameters influence the friction characteristics between the shoe sole and the floor and the existing work mainly focus on experimental studies. In this paper, we present modeling, analysis, and experiments to understand slip and force distributions between the shoe sole and floor surface during human walking. We present results for both soft and hard sole material. The computational approaches for slip and friction force distributions are presented using a spring-beam networks model. The model predictions match the experimentally observed sole deformations with large soft sole deformation at the beginning and the end stages of the stance, which indicates the increased risk for slip. The experiments confirm that both the previously reported required coefficient of friction (RCOF) and the deformation measurements in this study can be used to predict slip occurrence. Moreover, the deformation and force distribution results reported in this study provide further understanding and knowledge of slip initiation and termination under various biomechanical conditions.

Microstructural Effects on Initiation Behavior in HMX

NASA Astrophysics Data System (ADS)

Molek, Christopher; Welle, Eric; Hardin, Barrett; Vitarelli, Jim; Wixom, Ryan; Samuels, Philip

Understanding the role microstructure plays on ignition and growth behavior has been the subject of a significant body of research within the detonation physics community. The pursuit of this understanding is important because safety and performance characteristics have been shown to strongly correlate to particle morphology. Historical studies have often correlated bulk powder characteristics to the performance or safety characteristics of pressed materials. We believe that a clearer and more relevant correlation is made between the pressed microstructure and the observed detonation behavior. This type of assessment is possible, as techniques now exist for the quantification of the pressed microstructures. Our talk will report on experimental efforts that correlate directly measured microstructural characteristics to initiation threshold behavior of HMX based materials. The internal microstructures were revealed using an argon ion cross-sectioning technique. This technique enabled the quantification of density and interface area of the pores within the pressed bed using methods of stereology. These bed characteristics are compared to the initiation threshold behavior of three HMX based materials using an electric gun based test method. Finally, a comparison of experimental threshold data to supporting theoretical efforts will be made.

Petrologic implications of plate tectonics.

PubMed

Yoder, H S

1971-07-30

Petrologists can make significant contributions to the plate tectonic concept. Fixing the stability fields of the principal rock types involved will provide the limits of pressure and temperature of the various environments. Experimental determination of the partition coefficients of the trace elements will be helpful. Studies of the partial melting behavior of possible parental materials in the absence and presence of water, especially the undersaturated region, will contribute to the understanding of magma production. Experimental observations on the rheological properties of the peridotites below and just above the solidus will lead to a better evaluation of the convective mechanism. Measurement of the fundamental properties of rocks, such as the density of solids and liquids at high pressures and temperatures, would contribute to understanding the concepts of diapiric rise, magma segregation, and the low-velocity zone. Broader rock sampling of the oceanic areas of all environments will do much to define the petrologic provinces. The field petrologist specializing in the Paleozoic regions and Precambrian shields can contribute by examining those regions for old plate boundaries and devising new criteria for their recognition.

Surface reconstruction of InAs (001) depending on the pressure and temperature examined by density functional thermodynamics.

PubMed

Yeu, In Won; Park, Jaehong; Han, Gyuseung; Hwang, Cheol Seong; Choi, Jung-Hae

2017-09-06

A detailed understanding of the atomic configuration of the compound semiconductor surface, especially after reconstruction, is very important for the device fabrication and performance. While there have been numerous experimental studies using the scanning probe techniques, further theoretical studies on surface reconstruction are necessary to promote the clear understanding of the origins and development of such subtle surface structures. In this work, therefore, a pressure-temperature surface reconstruction diagram was constructed for the model case of the InAs (001) surface considering both the vibrational entropy and configurational entropy based on the density functional theory. Notably, the equilibrium fraction of various reconstructions was determined as a function of the pressure and temperature, not as a function of the chemical potential, which largely facilitated the direct comparison with the experiments. By taking into account the entropy effects, the coexistence of the multiple reconstructions and the fractional change of each reconstruction by the thermodynamic condition were predicted and were in agreement with the previous experimental observations. This work provides the community with a useful framework for such type of theoretical studies.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Chao; Xu, Jun; Cao, Lei

The electrodes of lithium-ion batteries (LIB) are known to be brittle and to fail earlier than the separators during an external crush event. Thus, the understanding of mechanical failure mechanism for LIB electrodes (anode and cathode) is critical for the safety design of LIB cells. In this paper, we present experimental and numerical studies on the constitutive behavior and progression of failure in LIB electrodes. Mechanical tests were designed and conducted to evaluate the constitutive properties of porous electrodes. Constitutive models were developed to describe the stress-strain response of electrodes under uniaxial tensile and compressive loads. The failure criterion andmore » a damage model were introduced to model their unique tensile and compressive failure behavior. The failure mechanism of LIB electrodes was studied using the blunt rod test on dry electrodes, and numerical models were built to simulate progressive failure. The different failure processes were examined and analyzed in detail numerically, and correlated with experimentally observed failure phenomena. Finally, the test results and models improve our understanding of failure behavior in LIB electrodes, and provide constructive insights on future development of physics-based safety design tools for battery structures under mechanical abuse.« less

Observational study of atmospheric surface layer and coastal weather in northern Qatar

NASA Astrophysics Data System (ADS)

Samanta, Dhrubajyoti; Sadr, Reza

2016-04-01

Atmospheric surface layer is the interaction medium between atmosphere and Earth's surface. Better understanding of its turbulence nature is essential in characterizing the local weather, climate variability and modeling of turbulent exchange processes. The importance of Middle East region, with its unique geographical, economical and weather condition is well recognized. However, high quality micrometeorological observational studies are rare in this region. Here we show experimental results from micrometeorological observations from an experimental site in the coastal region of Qatar during August-December 2015. Measurements of winds are obtained from three sonic anemometers installed on a 9 m tower placed at Al Ghariyah beach in northern Qatar (26.08 °N, 51.36 °E). Different surface layer characteristics is analyzed and compared with earlier studies in equivalent weather conditions. Monthly statistics of wind speed, wind direction, temperature, humidity and heat index are made from concurrent observations from sonic anemometer and weather station to explore variations with surface layer characteristics. The results also highlights potential impact of sea breeze circulation on local weather and atmospheric turbulence. The observed daily maximum temperature and heat index during morning period may be related to sea breeze circulations. Along with the operational micrometeorological observation system, a camera system and ultrasonic wave measurement system are installed recently in the site to study coastline development and nearshore wave dynamics. Overall, the complete observational set up is going to provide new insights about nearshore wind dynamics and wind-wave interaction in Qatar.

Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-random Features of Cortical Synaptic Wiring

PubMed Central

Miner, Daniel; Triesch, Jochen

2016-01-01

Understanding the structure and dynamics of cortical connectivity is vital to understanding cortical function. Experimental data strongly suggest that local recurrent connectivity in the cortex is significantly non-random, exhibiting, for example, above-chance bidirectionality and an overrepresentation of certain triangular motifs. Additional evidence suggests a significant distance dependency to connectivity over a local scale of a few hundred microns, and particular patterns of synaptic turnover dynamics, including a heavy-tailed distribution of synaptic efficacies, a power law distribution of synaptic lifetimes, and a tendency for stronger synapses to be more stable over time. Understanding how many of these non-random features simultaneously arise would provide valuable insights into the development and function of the cortex. While previous work has modeled some of the individual features of local cortical wiring, there is no model that begins to comprehensively account for all of them. We present a spiking network model of a rodent Layer 5 cortical slice which, via the interactions of a few simple biologically motivated intrinsic, synaptic, and structural plasticity mechanisms, qualitatively reproduces these non-random effects when combined with simple topological constraints. Our model suggests that mechanisms of self-organization arising from a small number of plasticity rules provide a parsimonious explanation for numerous experimentally observed non-random features of recurrent cortical wiring. Interestingly, similar mechanisms have been shown to endow recurrent networks with powerful learning abilities, suggesting that these mechanism are central to understanding both structure and function of cortical synaptic wiring. PMID:26866369

Vision in the natural world.

PubMed

Hayhoe, Mary M; Rothkopf, Constantin A

2011-03-01

Historically, the study of visual perception has followed a reductionist strategy, with the goal of understanding complex visually guided behavior by separate analysis of its elemental components. Recent developments in monitoring behavior, such as measurement of eye movements in unconstrained observers, have allowed investigation of the use of vision in the natural world. This has led to a variety of insights that would be difficult to achieve in more constrained experimental contexts. In general, it shifts the focus of vision away from the properties of the stimulus toward a consideration of the behavioral goals of the observer. It appears that behavioral goals are a critical factor in controlling the acquisition of visual information from the world. This insight has been accompanied by a growing understanding of the importance of reward in modulating the underlying neural mechanisms and by theoretical developments using reinforcement learning models of complex behavior. These developments provide us with the tools to understanding how tasks are represented in the brain, and how they control acquisition of information through use of gaze. WIREs Cogni Sci 2011 2 158-166 DOI: 10.1002/wcs.113 For further resources related to this article, please visit the WIREs website. Copyright © 2010 John Wiley & Sons, Ltd.

Cancer Theory from Systems Biology Point of View

NASA Astrophysics Data System (ADS)

Wang, Gaowei; Tang, Ying; Yuan, Ruoshi; Ao, Ping

In our previous work, we have proposed a novel cancer theory, endogenous network theory, to understand mechanism underlying cancer genesis and development. Recently, we apply this theory to hepatocellular carcinoma (HCC). A core endogenous network of hepatocyte was established by integrating the current understanding of hepatocyte at molecular level. Quantitative description of the endogenous network consisted of a set of stochastic differential equations which could generate many local attractors with obvious or non-obvious biological functions. By comparing with clinical observation and experimental data, the results showed that two robust attractors from the model reproduced the main known features of normal hepatocyte and cancerous hepatocyte respectively at both modular and molecular level. In light of our theory, the genesis and progression of cancer is viewed as transition from normal attractor to HCC attractor. A set of new insights on understanding cancer genesis and progression, and on strategies for cancer prevention, cure, and care were provided.

The energy spectrum of cosmic ray electrons between 10 and 1000 GeV

NASA Technical Reports Server (NTRS)

Anand, K. C.; Daniel, R. R.; Stephens, S. A.

1975-01-01

Measurements made by the Bombay Group on the fluxes of cosmic ray electrons in the energy range 10-1000 GeV have been compared with those of other workers in the same energy domain with a view to understand the present confused situation on the existing observations at these high energies. Such an analysis clearly brings out the current situation in its true perspective and highlights the care and emphasis to be placed on future experimentation in this important field.

Through the eye of the needle: recent advances in understanding biopolymer translocation.

PubMed

Panja, Debabrata; Barkema, Gerard T; Kolomeisky, Anatoly B

2013-10-16

In recent years polymer translocation, i.e., transport of polymeric molecules through nanometer-sized pores and channels embedded in membranes, has witnessed strong advances. It is now possible to observe single-molecule polymer dynamics during the motion through channels with unprecedented spatial and temporal resolution. These striking experimental studies have stimulated many theoretical developments. In this short theory-experiment review, we discuss recent progress in this field with a strong focus on non-equilibrium aspects of polymer dynamics during the translocation process.

Diffusion Analysis Of Hydrogen-Desorption Measurements

NASA Technical Reports Server (NTRS)

Danford, Merlin D.

1988-01-01

Distribution of hydrogen in metal explains observed desorption rate. Report describes application of diffusion theory to anaylsis of experimental data on uptake and elimination of hydrogen in high-strength alloys of 25 degree C. Study part of program aimed at understanding embrittlement of metals by hydrogen. Two nickel-base alloys, Rene 41 and Waspaloy, and one ferrous alloy, 4340 steel, studied. Desorption of hydrogen explained by distribution of hydrogen in metal. "Fast" hydrogen apparently not due to formation of hydrides on and below surface as proposed.

Cotunneling Drag Effect in Coulomb-Coupled Quantum Dots.

PubMed

Keller, A J; Lim, J S; Sánchez, David; López, Rosa; Amasha, S; Katine, J A; Shtrikman, Hadas; Goldhaber-Gordon, D

2016-08-05

In Coulomb drag, a current flowing in one conductor can induce a voltage across an adjacent conductor via the Coulomb interaction. The mechanisms yielding drag effects are not always understood, even though drag effects are sufficiently general to be seen in many low-dimensional systems. In this Letter, we observe Coulomb drag in a Coulomb-coupled double quantum dot and, through both experimental and theoretical arguments, identify cotunneling as essential to obtaining a correct qualitative understanding of the drag behavior.

Empirical approaches to metacommunities: a review and comparison with theory.

PubMed

Logue, Jürg B; Mouquet, Nicolas; Peter, Hannes; Hillebrand, Helmut

2011-09-01

Metacommunity theory has advanced understanding of how spatial dynamics and local interactions shape community structure and biodiversity. Here, we review empirical approaches to metacommunities, both observational and experimental, pertaining to how well they relate to and test theoretical metacommunity paradigms and how well they capture the realities of natural ecosystems. First, we show that the species-sorting and mass-effects paradigms are the most commonly tested and supported paradigms. Second, the dynamics observed can often be ascribed to two or more of the four non-exclusive paradigms. Third, empirical approaches relate only weakly to the concise assumptions and predictions made by the paradigms. Consequently, we suggest major avenues of improvement for empirical metacommunity approaches, including the integration across theoretical approaches and the incorporation of evolutionary and meta-ecosystem dynamics. We hope for metacommunity ecology to thereby bridge existing gaps between empirical and theoretical work, thus becoming a more powerful framework to understand dynamics across ecosystems. Copyright © 2011 Elsevier Ltd. All rights reserved.

An overview of the CalNex 2010 field mission: research to extend the understanding of climate and air quality issues in California (Invited)

NASA Astrophysics Data System (ADS)

Ryerson, T. B.

2009-12-01

CalNex is a major field study planned for May and June of 2010. The study, led by NOAA and the California Air Resources Board, coordinates many interagency partners with independent but complementary capabilities and goals. Observations from surface-, aircraft-, ship-, and space-based sensors, along with Lagrangian and Eulerian modeling studies, will be used to extend previous studies and contribute new data and understanding to issues relevant to climate change and air quality in California. This overview will present the integrated approach that will be taken in CalNex, utilizing long-term surface observations, instrumented tall towers, several major intensive ground sites, a network of daily ozonesonde launches, a radar profiling network, multiple instrumented research aircraft, a research vessel, and retrievals from several satellites. The primary CalNex science questions and experimental strategies to address them will be presented, with illustrations and data examples taken from recent field projects in California to provide context for the upcoming study.

Quantum Tunneling of Magnetization in Ultrasmall Half-Metallic V3O4 Quantum Dots: Displaying Quantum Superparamagnetic State

PubMed Central

Xiao, Chong; Zhang, Jiajia; Xu, Jie; Tong, Wei; Cao, Boxiao; Li, Kun; Pan, Bicai; Su, Haibin; Xie, Yi

2012-01-01

Quantum tunneling of magnetization (QTMs), stemming from their importance for understanding materials with unconventional properties, has continued to attract widespread theoretical and experimental attention. However, the observation of QTMs in the most promising candidates of molecular magnets and few iron-based compounds is limited to very low temperature. Herein, we first highlight a simple system, ultrasmall half-metallic V3O4 quantum dots, as a promising candidate for the investigation of QTMs at high temperature. The quantum superparamagnetic state (QSP) as a high temperature signature of QTMs is observed at 16 K, which is beyond absolute zero temperature and much higher than that of conventional iron-based compounds due to the stronger spin-orbital coupling of V3+ ions bringing high anisotropy energy. It is undoubtedly that this ultrasmall quantum dots, V3O4, offers not only a promising candidate for theoretical understanding of QTMs but also a very exciting possibility for computers using mesoscopic magnets. PMID:23091695

Young children's understanding of briefly versus extremely delayed images of the self: emergence of the autobiographical stance.

PubMed

Povinelli, D J; Simon, B B

1998-01-01

Eighty-eight young 3-, 4-, and 5-year-olds were scheduled for 2 testing sessions. On Visit 1, the children were videotaped playing a game while an experimenter covertly placed a large sticker on their head and covertly removed it after the game. One week later, the children were videotaped playing a different game. A sticker was again covertly placed on their heads. Half the children in each age group then observed the video from the previous week, whereas the other half observed the tape from 3 min earlier. Less than half of the 3-year-olds in both conditions reached up for the sticker. In contrast, the majority of 4- and 5-year-olds in the briefly delayed condition reached for the sticker, but few in the extremely delayed condition did so. By 4 years of age, children may have developed a causal understanding of the self's endurance through time.

Understanding titanium-catalysed radical-radical reactions: a DFT study unravels the complex kinetics of ketone-nitrile couplings.

PubMed

Streuff, Jan; Himmel, Daniel; Younas, Sara L

2018-04-03

The computational investigation of a titanium-catalysed reductive radical-radical coupling is reported. The results match the conclusions from an earlier experimental study and enable a further interpretation of the previously observed complex reaction kinetics. Furthermore, the interplay between neutral and cationic reaction pathways in titanium(iii)-catalysed reactions is investigated for the first time. The results show that hydrochloride additives and reaction byproducts play an important role in the respective equilibria. A full reaction profile is assembled and the computed activation barrier is found to be in reasonable agreement with the experiment. The conclusions are of fundamental importance to the field of low-valent titanium catalysis and the understanding of related catalytic radical-radical coupling reactions.

Laboratory Astrophysics: Enabling Scientific Discovery and Understanding

NASA Technical Reports Server (NTRS)

Kirby, K.

2006-01-01

NASA's Science Strategic Roadmap for Universe Exploration lays out a series of science objectives on a grand scale and discusses the various missions, over a wide range of wavelengths, which will enable discovery. Astronomical spectroscopy is arguably the most powerful tool we have for exploring the Universe. Experimental and theoretical studies in Laboratory Astrophysics convert "hard-won data into scientific understanding". However, the development of instruments with increasingly high spectroscopic resolution demands atomic and molecular data of unprecedented accuracy and completeness. How to meet these needs, in a time of severe budgetary constraints, poses a significant challenge both to NASA, the astronomical observers and model-builders, and the laboratory astrophysics community. I will discuss these issues, together with some recent examples of productive astronomy/lab astro collaborations.

The efficacy of student-centered instruction in supporting science learning.

PubMed

Granger, E M; Bevis, T H; Saka, Y; Southerland, S A; Sampson, V; Tate, R L

2012-10-05

Transforming science learning through student-centered instruction that engages students in a variety of scientific practices is central to national science-teaching reform efforts. Our study employed a large-scale, randomized-cluster experimental design to compare the effects of student-centered and teacher-centered approaches on elementary school students' understanding of space-science concepts. Data included measures of student characteristics and learning and teacher characteristics and fidelity to the instructional approach. Results reveal that learning outcomes were higher for students enrolled in classrooms engaging in scientific practices through a student-centered approach; two moderators were identified. A statistical search for potential causal mechanisms for the observed outcomes uncovered two potential mediators: students' understanding of models and evidence and the self-efficacy of teachers.

Molecular and functional aspects of menstruation in the macaque.

PubMed

Brenner, Robert M; Slayden, Ov D

2012-12-01

Much of our understanding of the molecular control of menstruation arises from laboratory models that experimentally recapitulate some, but not all, aspects of uterine bleeding observed in women. These models include: in vitro culture of endometrial explants or isolated endometrial cells, transplantation of human endometrial tissue into immunodeficient mice and the induction of endometrial breakdown in appropriately pretreated mice. Each of these models has contributed to our understanding of molecular and cellular mechanisms of menstruation, but nonhuman primates, especially macaques, are the animal model of choice for evaluating therapies for menstrual disorders. In this chapter we review some basic aspects of menstruation, with special emphasis on the macaque model and its relevance to the clinical issues of irregular and heavy menstrual bleeding (HMB).

Characterization and modeling of viscoelastic behavior of carbon nanotube reinforced polymers: The influence of interphase and nanotube morphology

NASA Astrophysics Data System (ADS)

Liu, Hua

The addition of nanoparticles into polymer materials has been observed to dramatically change the mechanical, thermal, electrical, and diffusion properties of the host polymers, promising a novel class of polymer matrix composite materials with superior properties and added functionalities that are ideal candidates in many applications, including aerospace, automobile, medical devices, and sporting goods. Understanding the behavior and underlying mechanisms of these polymer nanocomposites is critical. The research work presented in this dissertation represents one of the initial efforts in the long journey pursuing the ultimate understanding of nanoparticle reinforced polymer systems. Particular focal points are experimental evaluation and the development of appropriate modeling methods to capture the influence of the interphase on the overall viscoelastic behavior of carbon nanotube reinforced polymer nanocomposites. The first portion of this dissertation study investigates the viscoelastic behavior of MWCNT based PMMA nanocomposites, which complements our previous study of SWCNT/PMMA systems to confirm functionalization of nanotubes as an effective way to manipulate the interaction between nanotube and polymers and control the properties of the interphase region forming around the nanotubes and consequently change the overall performance of nanotube based polymer nanocomposites. In the second portion of this dissertation, we present a novel hybrid numerical-analytical modeling method that is capable of predicting viscoelastic behavior of multiphase polymer nanocomposites, in which the nanoscopic fillers can assume complex configurations. By combining the finite element technique and a micromechanical approach (particularly, the Mori-Tanaka method) with local phase properties, this method operates at low computational cost and effectively accounts for the influence of the interphase as well as in situ nanoparticle morphology. This modeling method is implemented two-dimensionally on nanotube and nanoplatelet based polymer nanocomposites. Given the experimentally measured frequency domain response of the bulk polymer, the viscoelastic behavior of the nanocomposites in both frequency and temperature domains can be calculated. The predicted pattern of influence of the interphase on the overall performance of the nanocomposites is consistent with the experimental observation. 3D parametric studies utilizing this modeling technique reveal that the nanotube morphology "modifies" the effect of interphase and hence profoundly influences the overall viscoelastic behavior. The findings help explain some experimental observations and furthermore, draw attention to the importance of morphology control through appropriate synthesis and processing techniques to further tune the thermomechanical behavior of the nanocomposites.

Phonon Lifetime Observation in Epitaxial ScN Film with Inelastic X-Ray Scattering Spectroscopy.

PubMed

Uchiyama, H; Oshima, Y; Patterson, R; Iwamoto, S; Shiomi, J; Shimamura, K

2018-06-08

Phonon-phonon scattering dominates the thermal properties in nonmetallic materials, and it directly influences device performance in applications. The understanding of the scattering has been progressing using computational approaches, and the direct and systematic observation of phonon modes that include momentum dependences is desirable. We report experimental data on the phonon dispersion curves and lifetimes in an epitaxially grown ScN film using inelastic x-ray scattering measurements. The momentum dependence of the optical phonon lifetimes is estimated from the spectral width, and the highest-energy phonon mode around the zone center is found to possess a short lifetime of 0.21 ps. A comparison with first-principles calculations shows that our observed phonon lifetimes are quantitatively explained by three-body phonon-phonon interactions.

Masses of Open-Flavour Heavy-Light Hybrids from QCD Sum Rules

NASA Astrophysics Data System (ADS)

Ho, Jason; Harnett, Derek; Steele, Tom

2017-01-01

Our current understanding of the strong interaction (QCD) permits the construction of colour singlet states with novel structures that do not fit within the traditional quark model, including hybrid mesons. To date, though other exotic structures such as pentaquark and tetraquark states have been confirmed, no unambiguous hybrid meson signals have been observed. However, with data collection at the GlueX experiment ongoing and with the construction of the PANDA experiment at FAIR, the opportunity to observe hybrid states has never been better. As theoretical calculations are a necessary piece for the identification of any observed experimental resonance, we present our mass predictions of heavy-light open-flavour hybrid mesons using QCD Laplace sum-rules for all scalar and vector JP channels, and including non-perturbative condensate contributions up to six-dimensions.

Phonon Lifetime Observation in Epitaxial ScN Film with Inelastic X-Ray Scattering Spectroscopy

NASA Astrophysics Data System (ADS)

Uchiyama, H.; Oshima, Y.; Patterson, R.; Iwamoto, S.; Shiomi, J.; Shimamura, K.

2018-06-01

Phonon-phonon scattering dominates the thermal properties in nonmetallic materials, and it directly influences device performance in applications. The understanding of the scattering has been progressing using computational approaches, and the direct and systematic observation of phonon modes that include momentum dependences is desirable. We report experimental data on the phonon dispersion curves and lifetimes in an epitaxially grown ScN film using inelastic x-ray scattering measurements. The momentum dependence of the optical phonon lifetimes is estimated from the spectral width, and the highest-energy phonon mode around the zone center is found to possess a short lifetime of 0.21 ps. A comparison with first-principles calculations shows that our observed phonon lifetimes are quantitatively explained by three-body phonon-phonon interactions.

Multiquark resonances

DOE PAGES

Esposito, A.; Pilloni, A.; Polosa, Antonio D.

2016-12-02

Multiquark resonances are undoubtedly experimentally observed. The number of states and the amount of details on their properties have been growing over the years. It is very recent the discovery of two pentaquarks and the confirmation of four tetraquarks, two of which had not been observed before. We mainly review the theoretical understanding of this sector of particle physics phenomenology and present some considerations attempting a coherent description of the so called X and Z resonances. The prominent problems plaguing theoretical models, like the absence of selection rules limiting the number of states predicted, motivate new directions in model building.more » Lastly, data are reviewed going through all of the observed resonances with particular attention to their common features and the purpose of providing a starting point to further research.« less

A competitive binding model predicts the response of mammalian olfactory receptors to mixtures

NASA Astrophysics Data System (ADS)

Singh, Vijay; Murphy, Nicolle; Mainland, Joel; Balasubramanian, Vijay

Most natural odors are complex mixtures of many odorants, but due to the large number of possible mixtures only a small fraction can be studied experimentally. To get a realistic understanding of the olfactory system we need methods to predict responses to complex mixtures from single odorant responses. Focusing on mammalian olfactory receptors (ORs in mouse and human), we propose a simple biophysical model for odor-receptor interactions where only one odor molecule can bind to a receptor at a time. The resulting competition for occupancy of the receptor accounts for the experimentally observed nonlinear mixture responses. We first fit a dose-response relationship to individual odor responses and then use those parameters in a competitive binding model to predict mixture responses. With no additional parameters, the model predicts responses of 15 (of 18 tested) receptors to within 10 - 30 % of the observed values, for mixtures with 2, 3 and 12 odorants chosen from a panel of 30. Extensions of our basic model with odorant interactions lead to additional nonlinearities observed in mixture response like suppression, cooperativity, and overshadowing. Our model provides a systematic framework for characterizing and parameterizing such mixing nonlinearities from mixture response data.

Observation of discrete time-crystalline order in a disordered dipolar many-body system

NASA Astrophysics Data System (ADS)

Choi, Soonwon; Choi, Joonhee; Landig, Renate; Kucsko, Georg; Zhou, Hengyun; Isoya, Junichi; Jelezko, Fedor; Onoda, Shinobu; Sumiya, Hitoshi; Khemani, Vedika; von Keyserlingk, Curt; Yao, Norman Y.; Demler, Eugene; Lukin, Mikhail D.

2017-03-01

Understanding quantum dynamics away from equilibrium is an outstanding challenge in the modern physical sciences. Out-of-equilibrium systems can display a rich variety of phenomena, including self-organized synchronization and dynamical phase transitions. More recently, advances in the controlled manipulation of isolated many-body systems have enabled detailed studies of non-equilibrium phases in strongly interacting quantum matter; for example, the interplay between periodic driving, disorder and strong interactions has been predicted to result in exotic ‘time-crystalline’ phases, in which a system exhibits temporal correlations at integer multiples of the fundamental driving period, breaking the discrete time-translational symmetry of the underlying drive. Here we report the experimental observation of such discrete time-crystalline order in a driven, disordered ensemble of about one million dipolar spin impurities in diamond at room temperature. We observe long-lived temporal correlations, experimentally identify the phase boundary and find that the temporal order is protected by strong interactions. This order is remarkably stable to perturbations, even in the presence of slow thermalization. Our work opens the door to exploring dynamical phases of matter and controlling interacting, disordered many-body systems.

The use of temperature programmable flow tubes for the study of atmospheric aerosols

NASA Astrophysics Data System (ADS)

Khalizov, A.; Sloan, J. J.

2003-04-01

In order to understand the response of atmospheric aerosols to changes they encounter in the natural atmosphere, it is usually necessary to observe models of these aerosol systems under carefully controlled laboratory conditions. This is particularly difficult for the condensed phase, for which agglomeration, gas-particle exchange and gravitational settling affect the composition and limit the observation time. Traditionally, studies of this kind have been carried out in large static chambers and flow tubes. While large chambers provide relatively long observations times, they afford the experimenter less direct control over the environment of the particles. Flow tubes, on the other hand provide very precise control of the experimental conditions, but a much shorter contact time. We have used temperature programmable flow tubes for the past decade to study the composition, size and phase changes that occur when aerosols are exposed to variations in the temperature and composition of the surrounding atmosphere. In many cases, our measurements also yield accurate rate constants for the nucleation of solids in liquid droplets. In this presentation, we will illustrate the capabilities of this method using results obtained from a new temperature programmable flow tube recently built in our laboratory.

Astronomers, Transits of Venus, and the Birth of Experimental Psychology

NASA Astrophysics Data System (ADS)

Sheehan, William; Thurber, S.

2012-01-01

The eighteenth century transits of Venus were regarded as the most important astronomical events of their era. Halley's expectation was that by observing the contact points between the limbs of Venus and the Sun, this distance could be determined to an accuracy of one part in 500. But in the event, it proved otherwise. But, as the British historian Agnes Clerke wrote in 1902: "A transit of Venus seems, at first sight, full of promise for solving the problem of the sun's distance. For nothing would appear easier than to determine exactly either the duration of the passage of a small, dark orb across a large brilliant disc, or the instant of its entry upon or exit from it". But in that word `exactly' what snares and pitfalls lie hid!” In the post-mortem analysis of the disappointing results, astronomers devoted a great deal of effort to understand the sources of errors. They rehearsed their observational techniques by observing, under strictly controlled conditions, transits of artificial planets across artificial Suns, and studied such parameters as attention and reflex reaction. In the process, the transits of Venus provided an important impetus to the early development of experimental psychology.

Fluorescence correlation spectroscopy diffusion laws to probe the submicron cell membrane organization.

PubMed

Wawrezinieck, Laure; Rigneault, Hervé; Marguet, Didier; Lenne, Pierre-François

2005-12-01

To probe the complexity of the cell membrane organization and dynamics, it is important to obtain simple physical observables from experiments on live cells. Here we show that fluorescence correlation spectroscopy (FCS) measurements at different spatial scales enable distinguishing between different submicron confinement models. By plotting the diffusion time versus the transverse area of the confocal volume, we introduce the so-called FCS diffusion law, which is the key concept throughout this article. First, we report experimental FCS diffusion laws for two membrane constituents, which are respectively a putative raft marker and a cytoskeleton-hindered transmembrane protein. We find that these two constituents exhibit very distinct behaviors. To understand these results, we propose different models, which account for the diffusion of molecules either in a membrane comprising isolated microdomains or in a meshwork. By simulating FCS experiments for these two types of organization, we obtain FCS diffusion laws in agreement with our experimental observations. We also demonstrate that simple observables derived from these FCS diffusion laws are strongly related to confinement parameters such as the partition of molecules in microdomains and the average confinement time of molecules in a microdomain or a single mesh of a meshwork.

Pre-adolescent Receptivity to Tobacco Marketing and Its Relationship to Acquiring Friends Who Smoke and Cigarette Smoking Initiation.

PubMed

Strong, David R; Messer, Karen; Hartman, Sheri J; Nodora, Jesse; Vera, Lisa; White, Martha M; Leas, Eric; Pharris-Ciurej, Nikolas; Borek, Nicolette; Pierce, John P

2017-10-01

This study extends research on receptivity to tobacco marketing over a key developmental period for cigarette smoking experimentation. The purpose of this study was to understand the effect of receptivity to tobacco marketing and exposure to friends who smoke on smoking experimentation. Participants were 10 to 13 years old who had never tried cigarettes (n = 878), interviewed six times at 8-month intervals. At baseline, 25% percent of the 10 and 11 years old in the sample of never smokers were receptive to tobacco marketing, while less than 5% had friends who smoked. Having a friend who smoked at study baseline and acquiring such friends for the first time during the study were the strongest predictors of smoking experimentation. Initial receptivity to tobacco marketing increased the risk of smoking experimentation independently of having friends who smoke at baseline or acquiring friends who smoke throughout the study period. The high level of receptivity observed even among 10 and 11 years old and its robust relationship with cigarette smoking experimentation independent of the significant risk associated with having friends who smoke suggests that successful prevention of receptivity may require intervention at an early age.

Pot binding as a variable confounding plant phenotype: theoretical derivation and experimental observations.

PubMed

Sinclair, Thomas R; Manandhar, Anju; Shekoofa, Avat; Rosas-Anderson, Pablo; Bagherzadi, Laleh; Schoppach, Remy; Sadok, Walid; Rufty, Thomas W

2017-04-01

Theoretical derivation predicted growth retardation due to pot water limitations, i.e., pot binding. Experimental observations were consistent with these limitations. Combined, these results indicate a need for caution in high-throughput screening and phenotyping. Pot experiments are a mainstay in many plant studies, including the current emphasis on developing high-throughput, phenotyping systems. Pot studies can be vulnerable to decreased physiological activity of the plants particularly when pot volume is small, i.e., "pot binding". It is necessary to understand the conditions under which pot binding may exist to avoid the confounding influence of pot binding in interpreting experimental results. In this paper, a derivation is offered that gives well-defined conditions for the occurrence of pot binding based on restricted water availability. These results showed that not only are pot volume and plant size important variables, but the potting media is critical. Artificial potting mixtures used in many studies, including many high-throughput phenotyping systems, are particularly susceptible to the confounding influences of pot binding. Experimental studies for several crop species are presented that clearly show the existence of thresholds of plant leaf area at which various pot sizes and potting media result in the induction of pot binding even though there may be no immediate, visual plant symptoms. The derivation and experimental results showed that pot binding can readily occur in plant experiments if care is not given to have sufficiently large pots, suitable potting media, and maintenance of pot water status. Clear guidelines are provided for avoiding the confounding effects of water-limited pot binding in studying plant phenotype.

Cometabolic degradation kinetics of TCE and phenol by Pseudomonas putida.

PubMed

Chen, Yan-Min; Lin, Tsair-Fuh; Huang, Chih; Lin, Jui-Che

2008-08-01

Modeling of cometabolic kinetics is important for better understanding of degradation reaction and in situ application of bio-remediation. In this study, a model incorporated cell growth and decay, loss of transformation activity, competitive inhibition between growth substrate and non-growth substrate and self-inhibition of non-growth substrate was proposed to simulate the degradation kinetics of phenol and trichloroethylene (TCE) by Pseudomonas putida. All the intrinsic parameters employed in this study were measured independently, and were then used for predicting the batch experimental data. The model predictions conformed well to the observed data at different phenol and TCE concentrations. At low TCE concentrations (<2 mg l(-1)), the models with or without self-inhibition of non-growth substrate both simulated the experimental data well. However, at higher TCE concentrations (>6 mg l(-1)), only the model considering self-inhibition can describe the experimental data, suggesting that a self-inhibition of TCE was present in the system. The proposed model was also employed in predicting the experimental data conducted in a repeated batch reactor, and good agreements were observed between model predictions and experimental data. The results also indicated that the biomass loss in the degradation of TCE below 2 mg l(-1) can be totally recovered in the absence of TCE for the next cycle, and it could be used for the next batch experiment for the degradation of phenol and TCE. However, for higher concentration of TCE (>6 mg l(-1)), the recovery of biomass may not be as good as that at lower TCE concentrations.

Sonic and Supersonic Jet Plumes

NASA Technical Reports Server (NTRS)

Venkatapathy, E.; Naughton, J. W.; Flethcher, D. G.; Edwards, Thomas A. (Technical Monitor)

1994-01-01

Study of sonic and supersonic jet plumes are relevant to understanding such phenomenon as jet-noise, plume signatures, and rocket base-heating and radiation. Jet plumes are simple to simulate and yet, have complex flow structures such as Mach disks, triple points, shear-layers, barrel shocks, shock- shear- layer interaction, etc. Experimental and computational simulation of sonic and supersonic jet plumes have been performed for under- and over-expanded, axisymmetric plume conditions. The computational simulation compare very well with the experimental observations of schlieren pictures. Experimental data such as temperature measurements with hot-wire probes are yet to be measured and will be compared with computed values. Extensive analysis of the computational simulations presents a clear picture of how the complex flow structure develops and the conditions under which self-similar flow structures evolve. From the computations, the plume structure can be further classified into many sub-groups. In the proposed paper, detail results from the experimental and computational simulations for single, axisymmetric, under- and over-expanded, sonic and supersonic plumes will be compared and the fluid dynamic aspects of flow structures will be discussed.

Experimental investigation of the influence of internal frames on the vibroacoustic behavior of a stiffened cylindrical shell using wavenumber analysis

NASA Astrophysics Data System (ADS)

Meyer, V.; Maxit, L.; Renou, Y.; Audoly, C.

2017-09-01

The understanding of the influence of non-axisymmetric internal frames on the vibroacoustic behavior of a stiffened cylindrical shell is of high interest for the naval or aeronautic industries. Several numerical studies have shown that the non-axisymmetric internal frame can increase the radiation efficiency significantly in the case of a mechanical point force. However, less attention has been paid to the experimental verification of this statement. That is why this paper proposes to compare the radiation efficiency estimated experimentally for a stiffened cylindrical shell with and without internal frames. The experimental process is based on scanning laser vibrometer measurements of the vibrations on the surface of the shell. A transform of the vibratory field in the wavenumber domain is then performed. It allows estimating the far-field radiated pressure with the stationary phase theorem. An increase of the radiation efficiency is observed in the low frequencies. Analysis of the velocity field in the physical and wavenumber spaces allows highlighting the coupling of the circumferential orders at the origin of the increase in the radiation efficiency.

Reversible and Irreversible Time-Dependent Behavior of GRCop-84

NASA Technical Reports Server (NTRS)

Lerch, Bradley A.; Arnold, Steven M.; Ellis, David L.

2017-01-01

A series of mechanical tests were conducted on a high-conductivity copper alloy, GRCop-84, in order to understand the time dependent response of this material. Tensile, creep, and stress relaxation tests were performed over a wide range of temperatures, strain rates, and stress levels to excite various amounts of time-dependent behavior. At low applied stresses the deformation behavior was found to be fully reversible. Above a certain stress, termed the viscoelastic threshold, irreversible deformation was observed. At these higher stresses the deformation was observed to be viscoplastic. Both reversible and irreversible regions contained time dependent deformation. These experimental data are documented to enable characterization of constitutive models to aid in design of high temperature components.

Model for multishot all-thermal all-optical switching in ferromagnets

NASA Astrophysics Data System (ADS)

Gorchon, J.; Yang, Y.; Bokor, J.

2016-07-01

All-optical magnetic switching (AOS) is a recently observed rich and puzzling phenomenon that offers promising technological applications. However, a fundamental understanding of the underlying mechanisms remains elusive. Here we present a model for multishot helicity-dependent AOS in ferromagnetic materials based on a purely heat-driven mechanism in the presence of magnetic circular dichroism (MCD). We predict that AOS should be possible with as little as 0.5% of MCD, after a minimum number of laser shots heat the sample close to the Curie temperature. Finally, we qualitatively reproduce the all-optically switched domain patterns observed experimentally by numerically simulating the result of multiple laser shots on an FePtC granular ferromagnetic film.

Dissipative rogue waves induced by soliton explosions in an ultrafast fiber laser.

PubMed

Liu, Meng; Luo, Ai-Ping; Xu, Wen-Cheng; Luo, Zhi-Chao

2016-09-01

We reported on the observation of dissipative rogue waves (DRWs) induced by soliton explosions in an ultrafast fiber laser. It was found that the soliton explosions could be obtained in the fiber laser at a critical pump power level. During the process of the soliton explosion, the high-amplitude waves that fulfill the rogue wave criteria could be detected. The appearance of the DRWs was identified by characterizing the intensity statistics of the time-stretched soliton profile based on the dispersive Fourier-transform method. Our findings provide the first experimental demonstration that the DRWs could be observed in the soliton explosion regime and further enhance the understanding of the physical mechanism of optical RW generation.

Enhancing the Introductory Astronomical Experience with the Use of a Tablet and Telescope

NASA Astrophysics Data System (ADS)

Gill, Robert M.; Burin, Michael J.

2013-02-01

College and university general education (GE) classes are designed to broaden the understanding of all college and university students in areas outside their major interest. However, most GE classes are lecture type and do not facilitate hands-on experimental or observational activities related to the specific subject matter. Utilizing astronomy application programs (apps), currently available for the iPad and iPhone, in conjunction with a small inexpensive telescope, allows students unique hands-on experiences to explore and observe astronomical objects and concepts independently outside of class. These activities enhance the students' overall GE experience in a unique way not possible prior to the development of these technologies.

Enhancing the Educational Astronomical Experience of Non-Science Majors With the Use of an iPad and Telescope (Abstract)

NASA Astrophysics Data System (ADS)

Gill, R. M.; Burin, M. J.

2012-12-01

General Education (GE) classes are designed to broaden the understanding of all college and university students in areas outside their major interest. However, most GE classes are lecture type and do not facilitate hands-on experimental or observational activities related to the specific subject matter. Utilizing several astronomy application programs (apps), currently available for the iPad and iPhone, in conjunction with a small inexpensive telescope allows students unique hands-on experiences to explore and observe astronomical objects and concepts independently outside of class. These activities enhance the student's overall GE experience in a unique way not possible prior to the development of this technology.

Thermomechanical Characterization and Modeling of Superelastic Shape Memory Alloy Beams and Frames

NASA Astrophysics Data System (ADS)

Watkins, Ryan

Of existing applications, the majority of shape memory alloy (SMA) devices consist of beam (orthodontic wire, eye glasses frames, catheter guide wires) and framed structures (cardiovascular stents, vena cava filters). Although uniaxial tension data is often sufficient to model basic beam behavior (which has been the main focus of the research community), the tension-compression asymmetry and complex phase transformation behavior of SMAs suggests more information is necessary to properly model higher complexity states of loading. In this work, SMA beams are experimentally characterized under general loading conditions (including tension, compression, pure bending, and buckling); furthermore, a model is developed with respect to general beam deformation based on the relevant phenomena observed in the experimental characterization. Stress induced phase transformation within superelastic SMA beams is shown to depend on not only the loading mode, but also kinematic constraints imposed by beam geometry (such as beam cross-section and length). In the cases of tension and pure bending, the structural behavior is unstable and corresponds to phase transformation localization and propagation. This unstable behavior is the result of a local level up--down--up stress/strain response in tension, which is measured here using a novel composite-based experimental technique. In addition to unstable phase transformation, intriguing post-buckling straightening is observed in short SMA columns during monotonic loading (termed unbuckling here). Based on this phenomenological understanding of SMA beam behavior, a trilinear based material law is developed in the context of a Shanley column model and is found to capture many of the relevant features of column buckling, including the experimentally observed unbuckling behavior. Due to the success of this model, it is generalized within the context of beam theory and, in conjunction with Bloch wave stability analysis, is used to model and design SMA honeycombs.

Mechanisms for Non-Linear Optical Behaviour in Molecular Fluids

NASA Astrophysics Data System (ADS)

McEwan, Kenneth J.

Available from UMI in association with The British Library. Requires signed TDF. This thesis describes a study of the non-linear optical mechanisms that allow high power laser radiation to interact and change the optical properties of fluid based media. Attention is focused on understanding the finite time-scale of the microscopic response and its influence on the experimental observation. Two classes of material are studied: liquid crystalline fluids in their isotropic phase and suspensions of particles capable of absorbing the laser radiation. In the former case a quantitative description of the optical transients seen in two experiments, degenerate four wave mixing and "z-scan" (self-focusing), is obtained. This description is based upon an analysis of refractive index changes associated with laser-induced molecular reorientation and with thermal effects, for molecules that absorb the laser radiation. Material parameters for a large range of nematogens are obtained by applying this description to experimental data. In the absorbing colloidal suspensions a novel mechanism for degenerate four wave mixing is identified and studied. The experimental results are suggestive of a mechanism in which vapour bubbles nucleate explosively around the colloidal particles and drive a coherent sound -wave excitation of the fluid. Theoretical studies confirm that rapid bubble nucleation is possible by a process of spinodal decomposition under the experimental conditions and it is shown that this mechanism can be expected to give rise to transient behaviour of the type observed. Finally laser-induced refractive index changes in a colloidal suspension in a solid matrix are studied. The dynamics of the formation of refractive index gratings is examined and correlated with microscopically observed structural changes in the matrix. ftn*Funded by DRA, Electronics Division (formerly RSRE).

Assessment of ion kinetic effects in shock-driven inertial confinement fusion implosions using fusion burn imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rosenberg, M. J., E-mail: mros@lle.rochester.edu; Séguin, F. H.; Rinderknecht, H. G.

The significance and nature of ion kinetic effects in D{sup 3}He-filled, shock-driven inertial confinement fusion implosions are assessed through measurements of fusion burn profiles. Over this series of experiments, the ratio of ion-ion mean free path to minimum shell radius (the Knudsen number, N{sub K}) was varied from 0.3 to 9 in order to probe hydrodynamic-like to strongly kinetic plasma conditions; as the Knudsen number increased, hydrodynamic models increasingly failed to match measured yields, while an empirically-tuned, first-step model of ion kinetic effects better captured the observed yield trends [Rosenberg et al., Phys. Rev. Lett. 112, 185001 (2014)]. Here, spatiallymore » resolved measurements of the fusion burn are used to examine kinetic ion transport effects in greater detail, adding an additional dimension of understanding that goes beyond zero-dimensional integrated quantities to one-dimensional profiles. In agreement with the previous findings, a comparison of measured and simulated burn profiles shows that models including ion transport effects are able to better match the experimental results. In implosions characterized by large Knudsen numbers (N{sub K} ∼ 3), the fusion burn profiles predicted by hydrodynamics simulations that exclude ion mean free path effects are peaked far from the origin, in stark disagreement with the experimentally observed profiles, which are centrally peaked. In contrast, a hydrodynamics simulation that includes a model of ion diffusion is able to qualitatively match the measured profile shapes. Therefore, ion diffusion or diffusion-like processes are identified as a plausible explanation of the observed trends, though further refinement of the models is needed for a more complete and quantitative understanding of ion kinetic effects.« less

Assessment of ion kinetic effects in shock-driven inertial confinement fusion (ICF) implosions using fusion burn imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rosenberg, M. J.; Séguin, F. H.; Amendt, P. A.

The significance and nature of ion kinetic effects in D³He-filled, shock-driven inertial confinement fusion implosions are assessed through measurements of fusion burn profiles. Over this series of experiments, the ratio of ion-ion mean free path to minimum shell radius (the Knudsen number, N K) was varied from 0.3 to 9 in order to probe hydrodynamic-like to strongly kinetic plasma conditions; as the Knudsen number increased, hydrodynamic models increasingly failed to match measured yields, while an empirically-tuned, first-step model of ion kinetic effects better captured the observed yield trends [Rosenberg et al., Phys. Rev. Lett. 112, 185001 (2014)]. Here, spatially resolvedmore » measurements of the fusion burn are used to examine kinetic ion transport effects in greater detail, adding an additional dimension of understanding that goes beyond zero-dimensional integrated quantities to one-dimensional profiles. In agreement with the previous findings, a comparison of measured and simulated burn profiles shows that models including ion transport effects are able to better match the experimental results. In implosions characterized by large Knudsen numbers (N K ~ 3), the fusion burn profiles predicted by hydrodynamics simulations that exclude ion mean free path effects are peaked far from the origin, in stark disagreement with the experimentally observed profiles, which are centrally peaked. In contrast, a hydrodynamics simulation that includes a model of ion diffusion is able to qualitatively match the measured profile shapes. Therefore, ion diffusion or diffusion-like processes are identified as a plausible explanation of the observed trends, though further refinement of the models is needed for a more complete and quantitative understanding of ion kinetic effects.« less

Assessment of ion kinetic effects in shock-driven inertial confinement fusion implosions using fusion burn imaging

NASA Astrophysics Data System (ADS)

Rosenberg, M. J.; Séguin, F. H.; Amendt, P. A.; Atzeni, S.; Rinderknecht, H. G.; Hoffman, N. M.; Zylstra, A. B.; Li, C. K.; Sio, H.; Gatu Johnson, M.; Frenje, J. A.; Petrasso, R. D.; Glebov, V. Yu.; Stoeckl, C.; Seka, W.; Marshall, F. J.; Delettrez, J. A.; Sangster, T. C.; Betti, R.; Wilks, S. C.; Pino, J.; Kagan, G.; Molvig, K.; Nikroo, A.

2015-06-01

The significance and nature of ion kinetic effects in D3He-filled, shock-driven inertial confinement fusion implosions are assessed through measurements of fusion burn profiles. Over this series of experiments, the ratio of ion-ion mean free path to minimum shell radius (the Knudsen number, NK) was varied from 0.3 to 9 in order to probe hydrodynamic-like to strongly kinetic plasma conditions; as the Knudsen number increased, hydrodynamic models increasingly failed to match measured yields, while an empirically-tuned, first-step model of ion kinetic effects better captured the observed yield trends [Rosenberg et al., Phys. Rev. Lett. 112, 185001 (2014)]. Here, spatially resolved measurements of the fusion burn are used to examine kinetic ion transport effects in greater detail, adding an additional dimension of understanding that goes beyond zero-dimensional integrated quantities to one-dimensional profiles. In agreement with the previous findings, a comparison of measured and simulated burn profiles shows that models including ion transport effects are able to better match the experimental results. In implosions characterized by large Knudsen numbers (NK ˜ 3), the fusion burn profiles predicted by hydrodynamics simulations that exclude ion mean free path effects are peaked far from the origin, in stark disagreement with the experimentally observed profiles, which are centrally peaked. In contrast, a hydrodynamics simulation that includes a model of ion diffusion is able to qualitatively match the measured profile shapes. Therefore, ion diffusion or diffusion-like processes are identified as a plausible explanation of the observed trends, though further refinement of the models is needed for a more complete and quantitative understanding of ion kinetic effects.

Assessment of ion kinetic effects in shock-driven inertial confinement fusion (ICF) implosions using fusion burn imaging

DOE PAGES

Rosenberg, M. J.; Séguin, F. H.; Amendt, P. A.; ...

2015-06-02

The significance and nature of ion kinetic effects in D³He-filled, shock-driven inertial confinement fusion implosions are assessed through measurements of fusion burn profiles. Over this series of experiments, the ratio of ion-ion mean free path to minimum shell radius (the Knudsen number, N K) was varied from 0.3 to 9 in order to probe hydrodynamic-like to strongly kinetic plasma conditions; as the Knudsen number increased, hydrodynamic models increasingly failed to match measured yields, while an empirically-tuned, first-step model of ion kinetic effects better captured the observed yield trends [Rosenberg et al., Phys. Rev. Lett. 112, 185001 (2014)]. Here, spatially resolvedmore » measurements of the fusion burn are used to examine kinetic ion transport effects in greater detail, adding an additional dimension of understanding that goes beyond zero-dimensional integrated quantities to one-dimensional profiles. In agreement with the previous findings, a comparison of measured and simulated burn profiles shows that models including ion transport effects are able to better match the experimental results. In implosions characterized by large Knudsen numbers (N K ~ 3), the fusion burn profiles predicted by hydrodynamics simulations that exclude ion mean free path effects are peaked far from the origin, in stark disagreement with the experimentally observed profiles, which are centrally peaked. In contrast, a hydrodynamics simulation that includes a model of ion diffusion is able to qualitatively match the measured profile shapes. Therefore, ion diffusion or diffusion-like processes are identified as a plausible explanation of the observed trends, though further refinement of the models is needed for a more complete and quantitative understanding of ion kinetic effects.« less

A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells

PubMed Central

2012-01-01

Background CD4+ T cells have several subsets of functional phenotypes, which play critical yet diverse roles in the immune system. Pathogen-driven differentiation of these subsets of cells is often heterogeneous in terms of the induced phenotypic diversity. In vitro recapitulation of heterogeneous differentiation under homogeneous experimental conditions indicates some highly regulated mechanisms by which multiple phenotypes of CD4+ T cells can be generated from a single population of naïve CD4+ T cells. Therefore, conceptual understanding of induced heterogeneous differentiation will shed light on the mechanisms controlling the response of populations of CD4+ T cells under physiological conditions. Results We present a simple theoretical framework to show how heterogeneous differentiation in a two-master-regulator paradigm can be governed by a signaling network motif common to all subsets of CD4+ T cells. With this motif, a population of naïve CD4+ T cells can integrate the signals from their environment to generate a functionally diverse population with robust commitment of individual cells. Notably, two positive feedback loops in this network motif govern three bistable switches, which in turn, give rise to three types of heterogeneous differentiated states, depending upon particular combinations of input signals. We provide three prototype models illustrating how to use this framework to explain experimental observations and make specific testable predictions. Conclusions The process in which several types of T helper cells are generated simultaneously to mount complex immune responses upon pathogenic challenges can be highly regulated, and a simple signaling network motif can be responsible for generating all possible types of heterogeneous populations with respect to a pair of master regulators controlling CD4+ T cell differentiation. The framework provides a mathematical basis for understanding the decision-making mechanisms of CD4+ T cells, and it can be helpful for interpreting experimental results. Mathematical models based on the framework make specific testable predictions that may improve our understanding of this differentiation system. PMID:22697466

Modelling the diffusion-available pore space of an unaltered granitic rock matrix using a micro-DFN approach

NASA Astrophysics Data System (ADS)

Svensson, Urban; Löfgren, Martin; Trinchero, Paolo; Selroos, Jan-Olof

2018-04-01

In sparsely fractured rock, the ubiquitous heterogeneity of the matrix, which has been observed in different laboratory and in situ experiments, has been shown to have a significant influence on retardation mechanisms that are of importance for the safety of deep geological repositories for nuclear waste. Here, we propose a conceptualisation of a typical heterogeneous granitic rock matrix based on micro-Discrete Fracture Networks (micro-DFN). Different sets of fractures are used to represent grain-boundary pores as well as micro fractures that transect different mineral grains. The micro-DFN model offers a great flexibility in the way inter- and intra-granular space is represented as the different parameters that characterise each fracture set can be fine tuned to represent samples of different characteristics. Here, the parameters of the model have been calibrated against experimental observations from granitic rock samples taken at Forsmark (Sweden) and different variant cases have been used to illustrate how the model can be tied to rock samples with different attributes. Numerical through-diffusion simulations have been carried out to infer the bulk properties of the model as well as to compare the computed mass flux with the experimental data from an analogous laboratory experiment. The general good agreement between the model results and the experimental observations shows that the model presented here is a reliable tool for the understanding of retardation mechanisms occurring at the mm-scale in the matrix.

How do energetic ions damage metallic surfaces?

DOE PAGES

Osetskiy, Yury N.; Calder, Andrew F.; Stoller, Roger E.

2015-02-20

Surface modification under bombardment by energetic ions observed under different conditions in structural and functional materials and can be either unavoidable effect of the conditions or targeted modification to enhance materials properties. Understanding basic mechanisms is necessary for predicting properties changes. The mechanisms activated during ion irradiation are of atomic scale and atomic scale modeling is the most suitable tool to study these processes. In this paper we present results of an extensive simulation program aimed at developing an understanding of primary surface damage in iron by energetic particles. We simulated 25 keV self-ion bombardment of Fe thin films withmore » (100) and (110) surfaces at room temperature. A large number of simulations, ~400, were carried out allow a statistically significant treatment of the results. The particular mechanism of surface damage depends on how the destructive supersonic shock wave generated by the displacement cascade interacts with the free surface. Three basic scenarios were observed, with the limiting cases being damage created far below the surface with little or no impact on the surface itself, and extensive direct surface damage on the timescale of a few picoseconds. In some instances, formation of large <100> vacancy loops beneath the free surface was observed, which may explain some earlier experimental observations.« less

A Mathematical Model of Neonatal Rat Atrial Monolayers with Constitutively Active Acetylcholine-Mediated K+ Current

PubMed Central

Majumder, Rupamanjari; Jangsangthong, Wanchana; Feola, Iolanda; Ypey, Dirk L.; Pijnappels, Daniël A.; Panfilov, Alexander V.

2016-01-01

Atrial fibrillation (AF) is the most frequent form of arrhythmia occurring in the industrialized world. Because of its complex nature, each identified form of AF requires specialized treatment. Thus, an in-depth understanding of the bases of these arrhythmias is essential for therapeutic development. A variety of experimental studies aimed at understanding the mechanisms of AF are performed using primary cultures of neonatal rat atrial cardiomyocytes (NRAMs). Previously, we have shown that the distinct advantage of NRAM cultures is that they allow standardized, systematic, robust re-entry induction in the presence of a constitutively-active acetylcholine-mediated K+ current (IKACh-c). Experimental studies dedicated to mechanistic explorations of AF, using these cultures, often use computer models for detailed electrophysiological investigations. However, currently, no mathematical model for NRAMs is available. Therefore, in the present study we propose the first model for the action potential (AP) of a NRAM with constitutively-active acetylcholine-mediated K+ current (IKACh-c). The descriptions of the ionic currents were based on patch-clamp data obtained from neonatal rats. Our monolayer model closely mimics the action potential duration (APD) restitution and conduction velocity (CV) restitution curves presented in our previous in vitro studies. In addition, the model reproduces the experimentally observed dynamics of spiral wave rotation, in the absence and in the presence of drug interventions, and in the presence of localized myofibroblast heterogeneities. PMID:27332890

Structural Fluctuation and Thermophysical Properties of Molten II-VI Compounds

NASA Technical Reports Server (NTRS)

2003-01-01

The objectives of the project is to conduct ground-based experimental and theoretical research on the structural fluctuations and thermophysical properties of molten II-VI compounds to enhance the basic understanding of the existing flight experiments in microgravity materials science programs and to study the fundamental heterophase fluctuations phenomena in these melts by: 1) Conducting neutron scattering analysis and measuring quantitatively the relevant thermophysical properties of the II-VI melts such as viscosity, electrical conductivity, thermal diffusivity and density as well as the relaxation characteristics of these properties to advance the understanding of the structural properties and the relaxation phenomena in these melts and 2) Performing theoretical analyses on the melt systems to interpret the experimental results. All the facilities required for the experimental measurements have been procured, installed and tested. A relaxation phenomenon, which shows a slow drift of the measured thermal conductivity toward the equilibrium value after cooling of the sample, was observed for the first time. An apparatus based on the transient torque induced by a rotating magnetic field has been developed to determine the viscosity and electrical conductivity of semiconducting liquids. Viscosity measurements on molten tellurium showed similar relaxation behavior as the measured diffusivity. Neutron scattering experiments were performed on the HgTe and HgZnTe melts and the results on pair distribution showed better resolution than previous reported.

The stability of a thin water layer over a rotating disk revisited

NASA Astrophysics Data System (ADS)

Poncet, Sébastien

2014-08-01

The flow driven by a rotating disk of a thin fluid layer in a fixed cylindrical casing is studied by direct numerical simulation and experimental flow visualizations. The characteristics of the flow are first briefly discussed but the focus of this work is to understand the transition to the primary instability. The primary bifurcation is 3D and appears as spectacular sharp-cornered polygonal patterns located along the shroud. The stability diagram is established experimentally in a ( Re, G plane, where G is the aspect ratio of the cavity and Re the rotational Reynolds number and confirmed numerically. The number of vortices scales well with the Ekman number based on the water depth, which confirms the existence of a Stewartson layer along the external cylinder. The critical mixed Reynolds number is found to be constant as in other rotating flows involving a shear-layer instability. Hysteresis cycles are observed highlighting the importance of the spin-up and spin-down processes. In some particular cases, a crossflow instability appears under the form of high azimuthal wave number spiral patterns, similar to those observed in a rotor-stator cavity with throughflow and coexists with the polygons. The DNS calculations confirm the experimental results under the flat free surface hypothesis.

Asymmetry induces Q-band split in the electronic excitations of magnesium porphyrin

NASA Astrophysics Data System (ADS)

Jiang, Xiankai; Gao, Yi; Lal, Ratnesh; Hu, Jun; Song, Bo

2018-07-01

The electronic excitations of magnesium porphyrin (MgP), a molecular model for understanding the physics in light harvesting by biological systems, have been studied extensively. However, the theoretical underpinning of experimental measurements is still lacking, especially about the sub-bands in absorption spectrum. Here we propose that an asymmetry of MgP based on the uneven charge distribution of pyrrole rings and the linear structure of sp hybridised orbitals in Mg can largely influence the electronic excitations. Upon a very weak asymmetry of Mg-pyrrole bindings in MgP being introduced through the uneven distribution of charge, three different excitations are observed in the Q-band region of the experimental spectrum. Additionally, the predicted B-band excitations are highly correlated (10-2 eV level) with experimental measurements. In contrast, without this asymmetry, there are only two degenerate excitations in the Q-band region, and low agreement (10-1 eV level) of the B-band excitations with the experiment. The key physics of the unexpected and observable asymmetry in MgP is the ability of Mg to form sp hybridised orbitals on the third shell upon Mg binding to the nitrogen of pyrrole ring. Our findings provide new insight for high-energy efficiency of natural as well as artificial light-harvesting system for energy challenge.

Earthquake sequence simulations with measured properties for JFAST core samples

NASA Astrophysics Data System (ADS)

Noda, Hiroyuki; Sawai, Michiyo; Shibazaki, Bunichiro

2017-08-01

Since the 2011 Tohoku-Oki earthquake, multi-disciplinary observational studies have promoted our understanding of both the coseismic and long-term behaviour of the Japan Trench subduction zone. We also have suggestions for mechanical properties of the fault from the experimental side. In the present study, numerical models of earthquake sequences are presented, accounting for the experimental outcomes and being consistent with observations of both long-term and coseismic fault behaviour and thermal measurements. Among the constraints, a previous study of friction experiments for samples collected in the Japan Trench Fast Drilling Project (JFAST) showed complex rate dependences: a and a-b values change with the slip rate. In order to express such complexity, we generalize a rate- and state-dependent friction law to a quadratic form in terms of the logarithmic slip rate. The constraints from experiments reduced the degrees of freedom of the model significantly, and we managed to find a plausible model by changing only a few parameters. Although potential scale effects between lab experiments and natural faults are important problems, experimental data may be useful as a guide in exploring the huge model parameter space. This article is part of the themed issue 'Faulting, friction and weakening: from slow to fast motion'.

Low Stretch Solid-Fuel Flame Transient Response to a Step Change in Gravity

NASA Technical Reports Server (NTRS)

Armstrong, J. B.; Olson, S. L.; T'ien, J. S.

2003-01-01

The effect of a step change in gravity level on the stability of low stretch diffusion flames over a solid fuel is studied both numerically and experimentally. Drop tower experiments have been conducted in NASA Glenn Research Center's 5.2 Zero Gravity Facility. In the experiments burning PMMA cylinders, a dynamic transition is observed when the steadily burning 1g flame is dropped and becomes a 0g flame. To understand the physics behind this dynamic transition, a transient stagnation point model has been developed which includes gas-phase radiation and solid phase coupling to describe this dynamic process. In this paper, the experimental results are compared with the model predictions. Both model and experiment show that the interior of the solid phase does not have time to change significantly in the few seconds of drop time, so the experimental results are pseudo-steady in the gas-phase, but the solid is inherently unsteady over long time scales. The model is also used to examine the importance of fractional heat losses on extinction, which clearly demonstrates that as the feedback from the flame decreases, the importance of the ongoing heat losses becomes greater, and extinction is observed when these losses represent 80% or more of the flame feedback.

Development of Laboratory Investigations in Disorders of Sex Development.

PubMed

Audí, Laura; Camats, Núria; Fernández-Cancio, Mónica; Granada, María L

2018-01-01

Scientific knowledge to understand the biological basis of sex development was prompted by the observation of variants different from the 2 most frequent body types, and this became one of the fields first studied by modern pediatric endocrinology. The clinical observation was supported by professionals working in different areas of laboratory sciences which led to the description of adrenal and gonadal steroidogenesis, the enzymes involved, and the different deficiencies. Steroid hormone measurements evolved from colorimetry to radioimmunoassay (RIA) and automated immunoassays, although gas and liquid chromatography coupled to mass spectrometry are now the gold standard techniques for steroid measurements. Peptide hormones and growth factors were purified, and their measurement evolved from RIA to automated immunoassays. Hormone action mechanisms were described, and their specific receptors were characterized and assayed in experimental materials and in patient tissues and cell cultures. The discovery of the genetic basis for variant sex developments began with the description of the sex chromosomes. Molecular technology allowed cloning of genes coding for the different proteins involved in sex determination and development. Experimental animal models aided in verifying the roles of proteins and also suggested new genes to be investigated. New candidate genes continue to be described based on experimental models and on next-generation sequencing of patient DNAs. © 2017 S. Karger AG, Basel.

Observation and experimental investigation of confinement effects on ion transport and electrokinetic flows at the microscale

PubMed Central

Benneker, Anne M.; Wood, Jeffery A.; Tsai, Peichun A.; Lammertink, Rob G. H.

2016-01-01

Electrokinetic effects adjacent to charge-selective interfaces (CSI) have been experimentally investigated in microfluidic platforms in order to gain understanding on underlying phenomena of ion transport at elevated applied voltages. We experimentally investigate the influence of geometry and multiple array densities of the CSI on concentration and flow profiles in a microfluidic set-up using nanochannels as the CSI. Particle tracking obtained under chronoamperometric measurements show the development of vortices in the microchannel adjacent to the nanochannels. We found that the direction of the electric field and the potential drop inside the microchannel has a large influence on the ion transport through the interface, for example by inducing immediate wall electroosmotic flow. In microfluidic devices, the electric field may not be directed normal to the interface, which can result in an inefficient use of the CSI. Multiple vortices are observed adjacent to the CSI, growing in size and velocity as a function of time and dependent on their location in the microfluidic device. Local velocities inside the vortices are measured to be more than 1.5 mm/s. Vortex speed, as well as flow speed in the channel, are dependent on the geometry of the CSI and the distance from the electrode. PMID:27853257

Global assessment of experimental climate warming on tundra vegetation: heterogeneity over space and time.

PubMed

Elmendorf, Sarah C; Henry, Gregory H R; Hollister, Robert D; Björk, Robert G; Bjorkman, Anne D; Callaghan, Terry V; Collier, Laura Siegwart; Cooper, Elisabeth J; Cornelissen, Johannes H C; Day, Thomas A; Fosaa, Anna Maria; Gould, William A; Grétarsdóttir, Járngerður; Harte, John; Hermanutz, Luise; Hik, David S; Hofgaard, Annika; Jarrad, Frith; Jónsdóttir, Ingibjörg Svala; Keuper, Frida; Klanderud, Kari; Klein, Julia A; Koh, Saewan; Kudo, Gaku; Lang, Simone I; Loewen, Val; May, Jeremy L; Mercado, Joel; Michelsen, Anders; Molau, Ulf; Myers-Smith, Isla H; Oberbauer, Steven F; Pieper, Sara; Post, Eric; Rixen, Christian; Robinson, Clare H; Schmidt, Niels Martin; Shaver, Gaius R; Stenström, Anna; Tolvanen, Anne; Totland, Orjan; Troxler, Tiffany; Wahren, Carl-Henrik; Webber, Patrick J; Welker, Jeffery M; Wookey, Philip A

2012-02-01

Understanding the sensitivity of tundra vegetation to climate warming is critical to forecasting future biodiversity and vegetation feedbacks to climate. In situ warming experiments accelerate climate change on a small scale to forecast responses of local plant communities. Limitations of this approach include the apparent site-specificity of results and uncertainty about the power of short-term studies to anticipate longer term change. We address these issues with a synthesis of 61 experimental warming studies, of up to 20 years duration, in tundra sites worldwide. The response of plant groups to warming often differed with ambient summer temperature, soil moisture and experimental duration. Shrubs increased with warming only where ambient temperature was high, whereas graminoids increased primarily in the coldest study sites. Linear increases in effect size over time were frequently observed. There was little indication of saturating or accelerating effects, as would be predicted if negative or positive vegetation feedbacks were common. These results indicate that tundra vegetation exhibits strong regional variation in response to warming, and that in vulnerable regions, cumulative effects of long-term warming on tundra vegetation - and associated ecosystem consequences - have the potential to be much greater than we have observed to date. © 2011 Blackwell Publishing Ltd/CNRS.

3D simulations of early blood vessel formation

NASA Astrophysics Data System (ADS)

Cavalli, F.; Gamba, A.; Naldi, G.; Semplice, M.; Valdembri, D.; Serini, G.

2007-08-01

Blood vessel networks form by spontaneous aggregation of individual cells migrating toward vascularization sites (vasculogenesis). A successful theoretical model of two-dimensional experimental vasculogenesis has been recently proposed, showing the relevance of percolation concepts and of cell cross-talk (chemotactic autocrine loop) to the understanding of this self-aggregation process. Here we study the natural 3D extension of the computational model proposed earlier, which is relevant for the investigation of the genuinely three-dimensional process of vasculogenesis in vertebrate embryos. The computational model is based on a multidimensional Burgers equation coupled with a reaction diffusion equation for a chemotactic factor and a mass conservation law. The numerical approximation of the computational model is obtained by high order relaxed schemes. Space and time discretization are performed by using TVD schemes and, respectively, IMEX schemes. Due to the computational costs of realistic simulations, we have implemented the numerical algorithm on a cluster for parallel computation. Starting from initial conditions mimicking the experimentally observed ones, numerical simulations produce network-like structures qualitatively similar to those observed in the early stages of in vivo vasculogenesis. We develop the computation of critical percolative indices as a robust measure of the network geometry as a first step towards the comparison of computational and experimental data.

Earthquake sequence simulations with measured properties for JFAST core samples.

PubMed

Noda, Hiroyuki; Sawai, Michiyo; Shibazaki, Bunichiro

2017-09-28

Since the 2011 Tohoku-Oki earthquake, multi-disciplinary observational studies have promoted our understanding of both the coseismic and long-term behaviour of the Japan Trench subduction zone. We also have suggestions for mechanical properties of the fault from the experimental side. In the present study, numerical models of earthquake sequences are presented, accounting for the experimental outcomes and being consistent with observations of both long-term and coseismic fault behaviour and thermal measurements. Among the constraints, a previous study of friction experiments for samples collected in the Japan Trench Fast Drilling Project (JFAST) showed complex rate dependences: a and a - b values change with the slip rate. In order to express such complexity, we generalize a rate- and state-dependent friction law to a quadratic form in terms of the logarithmic slip rate. The constraints from experiments reduced the degrees of freedom of the model significantly, and we managed to find a plausible model by changing only a few parameters. Although potential scale effects between lab experiments and natural faults are important problems, experimental data may be useful as a guide in exploring the huge model parameter space.This article is part of the themed issue 'Faulting, friction and weakening: from slow to fast motion'. © 2017 The Author(s).

The epistemological function of Hill's criteria.

PubMed

Bird, Alexander

2011-10-01

This article outlines an epistemological framework for understanding how Hill's criteria may aid us in establishing a causal hypothesis (A causes B) in an observational study. We consider Hill's criteria in turn with respect to their ability or otherwise to exclude alternative hypotheses (B causes A; there is a common cause of A and B; there is no causal connection between A and B). We may classify Hill's criteria according to which of the alternative hypotheses they are able to exclude, and also on the basis of whether they relate to (a) evidence from within observational study or (b) evidence independent of that study. It is noted that no criterion is able to exclude the common cause hypothesis in a systematic way. Observational studies are typically weaker than experimental studies, since the latter can systematically exclude competing hypotheses, whereas observational studies lack a systematic way of ruling out the common cause hypothesis. Copyright © 2011 Elsevier Inc. All rights reserved.

Two-photon interference of temporally separated photons.

PubMed

Kim, Heonoh; Lee, Sang Min; Moon, Han Seb

2016-10-06

We present experimental demonstrations of two-photon interference involving temporally separated photons within two types of interferometers: a Mach-Zehnder interferometer and a polarization-based Michelson interferometer. The two-photon states are probabilistically prepared in a symmetrically superposed state within the two interferometer arms by introducing a large time delay between two input photons; this state is composed of two temporally separated photons, which are in two different or the same spatial modes. We then observe two-photon interference fringes involving both the Hong-Ou-Mandel interference effect and the interference of path-entangled two-photon states simultaneously in a single interferometric setup. The observed two-photon interference fringes provide simultaneous observation of the interferometric properties of the single-photon and two-photon wavepackets. The observations can also facilitate a more comprehensive understanding of the origins of the interference phenomena arising from spatially bunched/anti-bunched two-photon states comprised of two temporally separated photons within the interferometer arms.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Builth-Williams, J. D.; Chiari, L.; Jones, D. B., E-mail: darryl.jones@flinders.edu.au, E-mail: michael.brunger@flinders.edu.au

We present experimental and theoretical results for the electron-impact ionization of the highest occupied molecular orbitals of tetrahydropyran and 1,4-dioxane. Using an (e,2e) technique in asymmetric coplanar kinematics, angular distributions of the slow ejected electron, with an energy of 20 eV, are measured when incident electrons at 250 eV ionize the target and scatter through an angle of either −10° or −15°. The data are compared with calculations performed at the molecular 3-body distorted wave level. Fair agreement between the theoretical model and the experimental measurements was observed. The similar structures for these targets provide key insights for assessing themore » limitations of the theoretical calculations. This study in turn facilitates an improved understanding of the dynamics in the ionization process.« less

Ionoluminescence properties of polystyrene-hosted fluorophore films induced by helium ions of energy 50-350 keV

NASA Astrophysics Data System (ADS)

Chakraborty, Subha; Huang, Mengbing

2017-10-01

We report on measurements and analysis of ionoluminescence properties of pure polystyrene films and polystyrene films doped with four types of fluorophores in low kinetic energies (50-350 keV) of ion irradiation. We have developed a theoretical model to understand the experimentally observed ionoluminescence behaviors in terms of scintillation yield from individual ion tracks, photophysical energy transfer mechanisms, and irradiation-induced defects. A comparison of the model and experimental results suggests that singlet up-conversion resulting from triplet-triplet annihilation processes may be responsible for enhanced singlet emission of the fluorophores at high ion beam flux densities. Energy transfer from the polystyrene matrix to the fluorophore molecules has been identified as an effective pathway to increasing the fluorescence efficiency in the doped scintillator films.

Stationary Light Pulses in Cold Atomic Media and without Bragg Gratings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Y.-W.; Liao, W.-T.; Peters, Thorsten

We study the creation of stationary light pulses (SLPs), i.e., light pulses without motion, based on the effect of electromagnetically induced transparency with two counterpropagating coupling fields in cold atoms. We show that the Raman excitations created by counterpropagating probe and coupling fields prohibit the formation of SLPs in media of cold and stationary atoms such as laser-cooled atom clouds, Bose condensates or color-center crystals. A method is experimentally demonstrated to suppress these Raman excitations and SLPs are realized in laser-cooled atoms. Furthermore, we report the first experimental observation of a bichromatic SLP at wavelengths for which no Bragg gratingmore » can be established. Our work advances the understanding of SLPs and opens a new avenue to SLP studies for few-photon nonlinear interactions.« less

Contrast of Backscattered Electron SEM Images of Nanoparticles on Substrates with Complex Structure

PubMed Central

Müller, Erich; Fritsch-Decker, Susanne; Hettler, Simon; Störmer, Heike; Weiss, Carsten; Gerthsen, Dagmar

2017-01-01

This study is concerned with backscattered electron scanning electron microscopy (BSE SEM) contrast of complex nanoscaled samples which consist of SiO2 nanoparticles (NPs) deposited on indium-tin-oxide covered bulk SiO2 and glassy carbon substrates. BSE SEM contrast of NPs is studied as function of the primary electron energy and working distance. Contrast inversions are observed which prevent intuitive interpretation of NP contrast in terms of material contrast. Experimental data is quantitatively compared with Monte-Carlo- (MC-) simulations. Quantitative agreement between experimental data and MC-simulations is obtained if the transmission characteristics of the annular semiconductor detector are taken into account. MC-simulations facilitate the understanding of NP contrast inversions and are helpful to derive conditions for optimum material and topography contrast. PMID:29109816

Contrast of Backscattered Electron SEM Images of Nanoparticles on Substrates with Complex Structure.

PubMed

Kowoll, Thomas; Müller, Erich; Fritsch-Decker, Susanne; Hettler, Simon; Störmer, Heike; Weiss, Carsten; Gerthsen, Dagmar

2017-01-01

This study is concerned with backscattered electron scanning electron microscopy (BSE SEM) contrast of complex nanoscaled samples which consist of SiO 2 nanoparticles (NPs) deposited on indium-tin-oxide covered bulk SiO 2 and glassy carbon substrates. BSE SEM contrast of NPs is studied as function of the primary electron energy and working distance. Contrast inversions are observed which prevent intuitive interpretation of NP contrast in terms of material contrast. Experimental data is quantitatively compared with Monte-Carlo- (MC-) simulations. Quantitative agreement between experimental data and MC-simulations is obtained if the transmission characteristics of the annular semiconductor detector are taken into account. MC-simulations facilitate the understanding of NP contrast inversions and are helpful to derive conditions for optimum material and topography contrast.

The onset of plasma potential locking

DOE PAGES

Hopkins, Matthew M.; Yee, Benjamin T.; Baalrud, Scott D.; ...

2016-06-22

In this study, we provide insight into the role and impact that a positively biased electrode (anode) has on bulk plasma potential. Using two-dimensional Particle-in-Cell simulations, we investigate the plasma potential as an anode transitions from very small (“probe” mode) to large (“locking” mode). Prior theory provides some guidance on when and how this transition takes place. Initial experimental results are also compared. The simulations demonstrate that as the surface area of the anode is increased transitions in plasma potential and sheath polarity occur, consistent with experimental observations and theoretical predictions. It is expected that understanding this basic plasma behaviormore » will be of interest to basic plasma physics communities, diagnostic developers, and plasma processing devices where control of bulk plasma potential is important.« less

Formation of Hydroxylamine on Dust Grains via Ammonia Oxidation

NASA Astrophysics Data System (ADS)

He, Jiao; Vidali, Gianfranco; Lemaire, Jean-Louis; Garrod, Robin T.

2015-01-01

The quest to detect prebiotic molecules in space, notably amino acids, requires an understanding of the chemistry involving nitrogen atoms. Hydroxylamine (NH2OH) is considered a precursor to the amino acid glycine. Although not yet detected, NH2OH is considered a likely target of detection with ALMA. We report on an experimental investigation of the formation of hydroxylamine on an amorphous silicate surface via the oxidation of ammonia. The experimental data are then fed into a simulation of the formation of NH2OH in dense cloud conditions. On ices at 14 K and with a modest activation energy barrier, NH2OH is found to be formed with an abundance that never falls below a factor 10 with respect to NH3. Suggestions of conditions for future observations are provided.

Investigation of the Temperature Hysteresis Phenomenon of a Loop Heat Pipe

NASA Technical Reports Server (NTRS)

Kaya, Tarik; Ku, Jentung; Hoang, Triem; Cheung, Mark K.

1999-01-01

The temperature hysteresis phenomenon of a Loop Heat Pipe (LHP) was experimentally investigated. The temperature hysteresis was identified by the fact that the operating temperature depends upon not only the imposed power but also the previous history of the power variation. The temperature hysteresis could impose limitations on the LHP applications since the LHP may exhibit different steady-state operating temperatures at a given power input even when the condenser sink temperature remains unchanged. In order to obtain insight to this phenomenon, a LHP was tested at different elevations and tilts by using an elaborated power profile. A hypothesis was suggested to explain the temperature hysteresis. This hypothesis explains well the experimental observations. Results of this study provide a better understanding of the performance characteristics of the LHPS.

Editorial

NASA Astrophysics Data System (ADS)

Bijeljic, Branko; Icardi, Matteo; Prodanović, Maša

2018-05-01

Substantial progress has been made over last few decades on understanding the physics of multiphase flow and reactive transport phenomena in subsurface porous media. Confluence of advances in experimental techniques (including micromodels, X-ray microtomography, Nuclear Magnetic Resonance (NMR)) as well as computational power have made it possible to observe static and dynamic multi-scale flow, transport and reactive processes, thus stimulating development of new generation of modelling tools from pore to field scale. One of the key challenges is to make experiment and models as complementary as possible, with continuously improving experimental methods in order to increase predictive capabilities of theoretical models across scales. This creates need to establish rigorous benchmark studies of flow, transport and reaction in porous media which can then serve as the basis for introducing more complex phenomena in future developments.

Task design influences prosociality in captive chimpanzees (Pan troglodytes).

PubMed

House, Bailey R; Silk, Joan B; Lambeth, Susan P; Schapiro, Steven J

2014-01-01

Chimpanzees confer benefits on group members, both in the wild and in captive populations. Experimental studies of how animals allocate resources can provide useful insights about the motivations underlying prosocial behavior, and understanding the relationship between task design and prosocial behavior provides an important foundation for future research exploring these animals' social preferences. A number of studies have been designed to assess chimpanzees' preferences for outcomes that benefit others (prosocial preferences), but these studies vary greatly in both the results obtained and the methods used, and in most cases employ procedures that reduce critical features of naturalistic social interactions, such as partner choice. The focus of the current study is on understanding the link between experimental methodology and prosocial behavior in captive chimpanzees, rather than on describing these animals' social motivations themselves. We introduce a task design that avoids isolating subjects and allows them to freely decide whether to participate in the experiment. We explore key elements of the methods utilized in previous experiments in an effort to evaluate two possibilities that have been offered to explain why different experimental designs produce different results: (a) chimpanzees are less likely to deliver food to others when they obtain food for themselves, and (b) evidence of prosociality may be obscured by more "complex" experimental apparatuses (e.g., those including more components or alternative choices). Our results suggest that the complexity of laboratory tasks may generate observed variation in prosocial behavior in laboratory experiments, and highlights the need for more naturalistic research designs while also providing one example of such a paradigm.

Practical training on porcine hearts enhances students' knowledge of human cardiac anatomy.

PubMed

Musumeci, Giuseppe; Loreto, Carla; Mazzone, Venera; Szychlinska, Marta Anna; Castrogiovanni, Paola; Castorina, Sergio

2014-05-01

Historically, cadavers have been used for the study of anatomy. Nowadays, the territorial and legal limitations of this approach have led to the introduction of alternative teaching methods such as the use of practical exercise consisting of dissection and observation of animal organs. The aim of this study was to evaluate the use of practical training on animal organs compared with the traditional method of anatomy teaching, based on the dissection of human cadavers. In this study, we seek to demonstrate the usefulness of practical exercise on animal organs. This practical training was held a week after the series of lectures, thus leaving time for the students to learn and understand the topics discussed. Immediately after the lecture, all of the students completed a preliminary test to assess the immediate effect of the lecture. Immediately before the practical exercise, both control and experimental groups completed a second test to assess the effectiveness of personal study. Immediately after practical training, a third test was completed by the experimental group and the control group (no practical activity on animal organs) to highlight the added value of hands-on practice in addition to the lecture. Data obtained from statistical analysis showed a p<0.05 (control group vs. experimental group) only for the third test as expected, highlighting significant differences in anatomy learning between control and experimental groups. Thus, the results of this study emphasize the utility of practical training on animal organs in learning and understanding anatomy, considering the limitations of the use of cadavers. Copyright © 2014 Elsevier GmbH. All rights reserved.

Task Design Influences Prosociality in Captive Chimpanzees (Pan troglodytes)

PubMed Central

House, Bailey R.; Silk, Joan B.; Lambeth, Susan P.; Schapiro, Steven J.

2014-01-01

Chimpanzees confer benefits on group members, both in the wild and in captive populations. Experimental studies of how animals allocate resources can provide useful insights about the motivations underlying prosocial behavior, and understanding the relationship between task design and prosocial behavior provides an important foundation for future research exploring these animals' social preferences. A number of studies have been designed to assess chimpanzees' preferences for outcomes that benefit others (prosocial preferences), but these studies vary greatly in both the results obtained and the methods used, and in most cases employ procedures that reduce critical features of naturalistic social interactions, such as partner choice. The focus of the current study is on understanding the link between experimental methodology and prosocial behavior in captive chimpanzees, rather than on describing these animals' social motivations themselves. We introduce a task design that avoids isolating subjects and allows them to freely decide whether to participate in the experiment. We explore key elements of the methods utilized in previous experiments in an effort to evaluate two possibilities that have been offered to explain why different experimental designs produce different results: (a) chimpanzees are less likely to deliver food to others when they obtain food for themselves, and (b) evidence of prosociality may be obscured by more “complex” experimental apparatuses (e.g., those including more components or alternative choices). Our results suggest that the complexity of laboratory tasks may generate observed variation in prosocial behavior in laboratory experiments, and highlights the need for more naturalistic research designs while also providing one example of such a paradigm. PMID:25191860

Experimental observation of self excited co-rotating multiple vortices in a dusty plasma with inhomogeneous plasma background

NASA Astrophysics Data System (ADS)

Choudhary, Mangilal; Mukherjee, S.; Bandyopadhyay, P.

2017-03-01

We report an experimental observation of multiple co-rotating vortices in an extended dust column in the background of an inhomogeneous diffused plasma. An inductively coupled rf discharge is initiated in the background of argon gas in the source region. This plasma was later found to diffuse into the main experimental chamber. A secondary DC glow discharge plasma is produced to introduce dust particles into the plasma volume. These micron-sized poly-disperse dust particles get charged in the background of the DC plasma and are transported by the ambipolar electric field of the diffused plasma. These transported particles are found to be confined in an electrostatic potential well, where the resultant electric field due to the diffused plasma (ambipolar E-field) and glass wall charging (sheath E-field) holds the micron-sized particles against the gravity. Multiple co-rotating (anti-clockwise) dust vortices are observed in the dust cloud for a particular discharge condition. The transition from multiple vortices to a single dust vortex is observed when input rf power is lowered. The occurrence of these vortices is explained on the basis of the charge gradient of dust particles, which is orthogonal to the ion drag force. The charge gradient is a consequence of the plasma inhomogeneity along the dust cloud length. The detailed nature and the reason for multiple vortices are still under investigation through further experiments; however, preliminary qualitative understanding is discussed based on the characteristic scale length of the dust vortex. There is a characteristic size of the vortex in the dusty plasma; therefore, multiple vortices could possibly be formed in an extended dusty plasma with inhomogeneous plasma background. The experimental results on the vortex motion of particles are compared with a theoretical model and are found to be in close agreement.

An observational examination of the literature in diagnostic anatomic pathology.

PubMed

Foucar, Elliott; Wick, Mark R

2005-05-01

Original research published in the medical literature confronts the reader with three very basic and closely linked questions--are the authors' conclusions true in the contextual setting in which the work was performed (internally valid); if so, are the conclusions also applicable in other practice settings (externally valid); and, if the conclusions of the study are bona fide, do they represent an important contribution to medical practice or are they true-but-insignificant? Most publications attempt to convince readers that the researchers' conclusions are both internally valid and important, and occasionally papers also directly address external validity. Developing standardized methods to facilitate the prospective determination of research importance would be useful to both journals and their readers, but has proven difficult. In contrast, the evidence-based medicine (EBM) movement has had more success with understanding and codifying factors thought to promote research validity. Of the many variables that can influence research validity, research design is the one that has received the most attention. The present paper reviews the contributions of EBM to understanding research validity, looking for areas where EBM's body of knowledge is applicable to the anatomic pathology (AP) literature. As part of this project, the authors performed a pilot observational analysis of a representative sample of the current pertinent literature on diagnostic tissue pathology. The results of that review showed that most of the latter publications employ one of the four categories of "observational" research design that have been delineated by the EBM movement, and that the most common of these observational designs is a "cross-sectional" comparison. Pathologists do not presently use the "experimental" research designs so admired by advocates of EBM. Slightly > 50% of AP observational studies employed statistical evaluations to support their final conclusions. Comparison of the current AP literature with a selected group of papers published in 1977 shows a discernible change over that period that has affected not just technological procedures, but also research design and use of statistics. Although we feel that advocates of EBM deserve credit for bringing attention to the close link between research design and research validity, much of the EBM effort has centered on refining "experimental" methodology, and the complexities of observational research have often been treated in an inappropriately dismissive manner. For advocates of EBM, an observational study is what you are relegated to as a second choice when you are unable to do an experimental study. The latter viewpoint may be true for evaluating new chemotherapeutic agents, but is unacceptable to pathologists, whose research advances are currently completely dependent on well-conducted observational research. Rather than succumb to randomization envy and accept EBM's assertion that observational research is second best, the challenge to AP is to develop and adhere to standards for observational research that will allow our patients to benefit from the full potential of this time tested approach to developing valid insights into disease.

Using R in experimental design with BIBD: An application in health sciences

NASA Astrophysics Data System (ADS)

Oliveira, Teresa A.; Francisco, Carla; Oliveira, Amílcar; Ferreira, Agostinho

2016-06-01

Considering the implementation of an Experimental Design, in any field, the experimenter must pay particular attention and look for the best strategies in the following steps: planning the design selection, conduct the experiments, collect observed data, proceed to analysis and interpretation of results. The focus is on providing both - a deep understanding of the problem under research and a powerful experimental process at a reduced cost. Mainly thanks to the possibility of allowing to separate variation sources, the importance of Experimental Design in Health Sciences is strongly recommended since long time. Particular attention has been devoted to Block Designs and more precisely to Balanced Incomplete Block Designs - in this case the relevance states from the fact that these designs allow testing simultaneously a number of treatments bigger than the block size. Our example refers to a possible study of inter reliability of the Parkinson disease, taking into account the UPDRS (Unified Parkinson's disease rating scale) in order to test if there are significant differences between the specialists who evaluate the patients performances. Statistical studies on this disease were described for example in Richards et al (1994), where the authors investigate the inter-rater Reliability of the Unified Parkinson's Disease Rating Scale Motor Examination. We consider a simulation of a practical situation in which the patients were observed by different specialists and the UPDRS on assessing the impact of Parkinson's disease in patients was observed. Assigning treatments to the subjects following a particular BIBD(9,24,8,3,2) structure, we illustrate that BIB Designs can be used as a powerful tool to solve emerging problems in this area. Once a structure with repeated blocks allows to have some block contrasts with minimum variance, see Oliveira et al. (2006), the design with cardinality 12 was selected for the example. R software was used for computations.

Oceans of opportunity: exploring vertebrate hematopoiesis in zebrafish.

PubMed

Carroll, Kelli J; North, Trista E

2014-08-01

Exploitation of the zebrafish model in hematology research has surged in recent years, becoming one of the most useful and tractable systems for understanding regulation of hematopoietic development, homeostasis, and malignancy. Despite the evolutionary distance between zebrafish and humans, remarkable genetic and phenotypic conservation in the hematopoietic system has enabled significant advancements in our understanding of blood stem and progenitor cell biology. The strengths of zebrafish in hematology research lie in the ability to perform real-time in vivo observations of hematopoietic stem, progenitor, and effector cell emergence, expansion, and function, as well as the ease with which novel genetic and chemical modifiers of specific hematopoietic processes or cell types can be identified and characterized. Further, myriad transgenic lines have been developed including fluorescent reporter systems to aid in the visualization and quantification of specified cell types of interest and cell-lineage relationships, as well as effector lines that can be used to implement a wide range of experimental manipulations. As our understanding of the complex nature of blood stem and progenitor cell biology during development, in response to infection or injury, or in the setting of hematologic malignancy continues to deepen, zebrafish will remain essential for exploring the spatiotemporal organization and integration of these fundamental processes, as well as the identification of efficacious small molecule modifiers of hematopoietic activity. In this review, we discuss the biology of the zebrafish hematopoietic system, including similarities and differences from mammals, and highlight important tools currently utilized in zebrafish embryos and adults to enhance our understanding of vertebrate hematology, with emphasis on findings that have impacted our understanding of the onset or treatment of human hematologic disorders and disease. Copyright © 2014 ISEH - International Society for Experimental Hematology. Published by Elsevier Inc. All rights reserved.

Understanding Geomorphological Processes on the Earth's Surface from Laboratory Experiments and the Role of Communities of Practice in Generating Reusable Data

NASA Astrophysics Data System (ADS)

Hsu, L.

2016-12-01

Geomorphological processes move masses of sediment across the face of the Earth, from mountain tops to hillslopes, rivers, flood plains, and coastlines, on a range of temporal and spatial scales that span many orders of magnitude. These processes, sometimes spanning millennia and sometimes occurring catastrophically, affect human communities that live on and near these surface landforms. Experiments conveniently scale these processes to time and space that can be observed and measured in the laboratory. As a result, the research community has produced remarkable experimental datasets for processes such as particle transport, hillslope erosion, channel migration, and coastline evolution. These datasets build a collection that quantifies a wide range of environmental processes and contributes to hazards mitigation and the understanding of long-term effects of climate and tectonics on landscape evolution. However, technology and data acquisition rates are outgrowing capabilities for storing, maintaining, and serving the data. Solutions that improve preservation, reuse, and attribution of geomorphological data from unique experimental set-ups are germinating at different research centers. These solutions allow the cross-disciplinary data integration that is often necessary to achieving a mechanistic and holistic understanding of the processes that shape the Earth's surface. Communities of practice such as the Sediment Experimentalist Network (SEN) and the U.S. Geological Survey's Community for Data Integration (USGS CDI) play a critical role in effectively facilitating information exchange about tools, methods, and results that accelerate experimental success. Through community interactions and a culture change to generate data more fit for reuse, broad challenges in reproducibility, scaling, and integration may be addressed, leading to more rapid progress in Earth surface process research.

Photochemical Formation of Aerosol in Planetary Atmospheres: Photon and Water Mediated Chemistry of SO_2

NASA Astrophysics Data System (ADS)

Kroll, Jay A.; Donaldson, D. J.; Vaida, Veronica

2016-06-01

Sulfur compounds have been observed in a number of planetary atmospheres throughout our solar system. Our current understanding of sulfur chemistry explains much of what we observe in Earth's atmosphere. However, several discrepancies between modeling and observations of the Venusian atmosphere show there are still problems in our fundamental understanding of sulfur chemistry. This is of particular concern due to the important role sulfur compounds play in the formation of aerosols, which have a direct impact on planetary climates, including Earth's. We investigate the role of water complexes in the hydration of sulfur oxides and dehydration of sulfur acids and will present spectroscopic studies to document such effects. I will present recent work investigating mixtures of SO_2 and water that generate large quantities of aerosol when irradiated with solar UV light, even in the absence of traditional OH chemistry. I will discuss a proposed mechanism for the formation of sulfurous acid (H_2SO_3) and present recent experimental work that supports this proposed mechanism. Additionally, the implications that photon-induced hydration of SO_2 has for aerosol formation in the atmosphere of earth as well as other planetary atmospheres will be discussed.

Structure and Symmetry of Ground States of Colloidal Clusters

NASA Astrophysics Data System (ADS)

Klein, Ellen D.; Rogers, W. Benjamin; Manoharan, Vinothan N.

We experimentally study colloidal clusters consisting of 6 to 100 spherical particles bound together with short range, DNA-mediated attractions. These clusters are a model system for understanding colloidal self-assembly and dynamics, since the positions and motion of all particles can be observed in real space. For 10 particles and fewer, the ground states are degenerate, and, as shown in previous work, the probabilities of observing specific clusters depend primarily on their rotational entropy, which is determined by symmetry. Thus less symmetric structures are more frequently observed. However, for larger numbers of particles the ground states appear to be subsets of close-packed lattices, which tend to have higher symmetry. To understand how this transition occurs as a function of the number of particles, we coat colloidal particles with complementary DNA strands that induce a short-range, temperature-dependent interparticle attraction. We then assemble and anneal an ensemble of clusters with 10 or more particles. We characterize the number of apparent ground states, their symmetries, and their probabilities as a function of the size of the cluster using confocal microscopy. This work is supported by NSF DMR-1306410. This material is based upon work supported by the National Science Foundation Graduate Research Fellowship Program.

Understanding mechanisms of raveling to extend open graded friction course (OGFC) service life.

DOT National Transportation Integrated Search

2016-03-01

To understand the mechanisms of raveling in open graded friction course (OGFC) mixtures, this project was divided into experimental measurements and finite element (FE) modeling. For the experimental part, mixtures with good and poor field performanc...

Is animal experimentation fundamental?

PubMed

d'Acampora, Armando José; Rossi, Lucas Félix; Ely, Jorge Bins; de Vasconcellos, Zulmar Acciolli

2009-01-01

The understanding about the utilization of experimental animals in scientific research and in teaching is many times a complex issue. Special attention needs to be paid to attain the understanding by the general public of the importance of animal experimentation in experimental research and in undergraduate medical teaching. Experimental teaching and research based on the availability of animals for experimentation is important and necessary for the personal and scientific development of the physician-to-be. The technological arsenal which intends to mimic experimentation animals and thus fully replace their use many times does not prove to be compatible with the reality of the living animal. The purpose of this paper is to discuss aspects concerning this topic, bringing up an issue which is complex and likely to arouse in-depth reflections.

Distinguishing intentional from accidental actions in orangutans (Pongo pygmaeus), chimpanzees (Pan troglodytes), and human children (Homo sapiens).

PubMed

Call, J; Tomasello, M

1998-06-01

This study investigates the understanding of others' intentions in 2- and 3-year-old children, chimpanzees (Pan troglodytes), and orangutans (Pongo pygmaeus). During training, subjects learned to use a discriminative cue to select a baited box. During testing, the experimenter placed a marker on top of the baited box to inform the subject of the reward's location. However, the experimenter also accidentally dropped the marker on top of an unbaited box, so that during any given trial the experimenter marked 2 boxes, 1 intentionally and 1 accidentally. All 3 species preferentially selected the box the experimenter had marked intentionally (especially during the initial trials), with 3-year-old children presenting the most robust results. These findings suggest that subjects understood something about the experimenter's intentions. The authors speculate that understanding of others' intentions may precede the understanding of others' beliefs both at the ontogenetic and phylogenetic levels.

Watershed Allied Telemetry Experimental Research

NASA Astrophysics Data System (ADS)

Li, Xin; Li, Xiaowen; Li, Zengyuan; Ma, Mingguo; Wang, Jian; Xiao, Qing; Liu, Qiang; Che, Tao; Chen, Erxue; Yan, Guangjian; Hu, Zeyong; Zhang, Lixin; Chu, Rongzhong; Su, Peixi; Liu, Qinhuo; Liu, Shaomin; Wang, Jindi; Niu, Zheng; Chen, Yan; Jin, Rui; Wang, Weizhen; Ran, Youhua; Xin, Xiaozhou; Ren, Huazhong

2009-11-01

The Watershed Allied Telemetry Experimental Research (WATER) is a simultaneous airborne, satellite-borne, and ground-based remote sensing experiment aiming to improve the observability, understanding, and predictability of hydrological and related ecological processes at a catchment scale. WATER consists of the cold region, forest, and arid region hydrological experiments as well as a hydrometeorology experiment and took place in the Heihe River Basin, a typical inland river basin in the northwest of China. The field campaigns have been completed, with an intensive observation period lasting from 7 March to 12 April, from 15 May to 22 July, and from 23 August to 5 September 2008: in total, 120 days. Twenty-five airborne missions were flown. Airborne sensors including microwave radiometers at L, K, and Ka bands, imaging spectrometer, thermal imager, CCD, and lidar were used. Various satellite data were collected. Ground measurements were carried out at four scales, that is, key experimental area, foci experimental area, experiment site, and elementary sampling plot, using ground-based remote sensing instruments, densified network of automatic meteorological stations, flux towers, and hydrological stations. On the basis of these measurements, the remote sensing retrieval models and algorithms of water cycle variables are to be developed or improved, and a catchment-scale land/hydrological data assimilation system is being developed. This paper reviews the background, scientific objectives, experiment design, filed campaign implementation, and current status of WATER. The analysis of the data will continue over the next 2 years, and limited revisits to the field are anticipated.

Is young children's recognition of pretense metarepresentational or merely behavioral? Evidence from 2- and 3-year-olds' understanding of pretend sounds and speech.

PubMed

Friedman, Ori; Neary, Karen R; Burnstein, Corinna L; Leslie, Alan M

2010-05-01

When young children observe pretend-play, do they interpret it simply as a type of behavior, or do they infer the underlying mental state that gives the behavior meaning? This is a long-standing question with deep implications for how "theory on mind" develops. The two leading accounts of shared pretense give opposing answers. The behavioral theory proposes that children represent pretense as a form of behavior (behaving in a way that would be appropriate if P); the metarepresentational theory argues that children instead represent pretense via the early concept PRETEND. A test between these accounts is provided by children's understanding of pretend sounds and speech. We report the first experiments directly investigating this understanding. In three experiments, 2- and 3-year-olds' listened to requests that were either spoken normally, or with the pretense that a teddy bear was uttering them. To correctly fulfill the requests, children had to represent the normal utterance as the experimenter's, and the pretend utterances as the bear's. Children succeeded at both ages, suggesting that they can represent pretend speech (the requests) as coming from counterfactual sources (the bear rather than the experimenter). We argue that this is readily explained by the metarepresentational theory, but harder to explain if children are behaviorists about pretense. Copyright 2010 Elsevier B.V. All rights reserved.

Identifying Genotype-by-Environment Interactions in the Metabolism of Germinating Arabidopsis Seeds Using Generalized Genetical Genomics 1[C][W][OA

PubMed Central

Joosen, Ronny Viktor Louis; Arends, Danny; Li, Yang; Willems, Leo A.J.; Keurentjes, Joost J.B.; Ligterink, Wilco; Jansen, Ritsert C.; Hilhorst, Henk W.M.

2013-01-01

A complex phenotype such as seed germination is the result of several genetic and environmental cues and requires the concerted action of many genes. The use of well-structured recombinant inbred lines in combination with “omics” analysis can help to disentangle the genetic basis of such quantitative traits. This so-called genetical genomics approach can effectively capture both genetic and epistatic interactions. However, to understand how the environment interacts with genomic-encoded information, a better understanding of the perception and processing of environmental signals is needed. In a classical genetical genomics setup, this requires replication of the whole experiment in different environmental conditions. A novel generalized setup overcomes this limitation and includes environmental perturbation within a single experimental design. We developed a dedicated quantitative trait loci mapping procedure to implement this approach and used existing phenotypical data to demonstrate its power. In addition, we studied the genetic regulation of primary metabolism in dry and imbibed Arabidopsis (Arabidopsis thaliana) seeds. In the metabolome, many changes were observed that were under both environmental and genetic controls and their interaction. This concept offers unique reduction of experimental load with minimal compromise of statistical power and is of great potential in the field of systems genetics, which requires a broad understanding of both plasticity and dynamic regulation. PMID:23606598

A Minimal Regulatory Network of Extrinsic and Intrinsic Factors Recovers Observed Patterns of CD4+ T Cell Differentiation and Plasticity

PubMed Central

Martinez-Sanchez, Mariana Esther; Mendoza, Luis; Villarreal, Carlos; Alvarez-Buylla, Elena R.

2015-01-01

CD4+ T cells orchestrate the adaptive immune response in vertebrates. While both experimental and modeling work has been conducted to understand the molecular genetic mechanisms involved in CD4+ T cell responses and fate attainment, the dynamic role of intrinsic (produced by CD4+ T lymphocytes) versus extrinsic (produced by other cells) components remains unclear, and the mechanistic and dynamic understanding of the plastic responses of these cells remains incomplete. In this work, we studied a regulatory network for the core transcription factors involved in CD4+ T cell-fate attainment. We first show that this core is not sufficient to recover common CD4+ T phenotypes. We thus postulate a minimal Boolean regulatory network model derived from a larger and more comprehensive network that is based on experimental data. The minimal network integrates transcriptional regulation, signaling pathways and the micro-environment. This network model recovers reported configurations of most of the characterized cell types (Th0, Th1, Th2, Th17, Tfh, Th9, iTreg, and Foxp3-independent T regulatory cells). This transcriptional-signaling regulatory network is robust and recovers mutant configurations that have been reported experimentally. Additionally, this model recovers many of the plasticity patterns documented for different T CD4+ cell types, as summarized in a cell-fate map. We tested the effects of various micro-environments and transient perturbations on such transitions among CD4+ T cell types. Interestingly, most cell-fate transitions were induced by transient activations, with the opposite behavior associated with transient inhibitions. Finally, we used a novel methodology was used to establish that T-bet, TGF-β and suppressors of cytokine signaling proteins are keys to recovering observed CD4+ T cell plastic responses. In conclusion, the observed CD4+ T cell-types and transition patterns emerge from the feedback between the intrinsic or intracellular regulatory core and the micro-environment. We discuss the broader use of this approach for other plastic systems and possible therapeutic interventions. PMID:26090929

The Immunomodulation and Anti-Inflammatory Effects of Garlic Organosulfur Compounds in Cancer Chemoprevention

PubMed Central

Schäfer, Georgia; Kaschula, Catherine H.

2014-01-01

Garlic (Allium sativum) has been used for centuries as a prophylactic and therapeutic medicinal agent. Importantly, garlic has been suggested to have both cancer-preventive potential as well as significant enhancing effects on the immune system. While these observations are supported experimentally both in vitro and in vivo, the impact of garlic in assisting the immune system in the prevention of cancer still lacks experimental confirmation. Studies addressing the immunomodulatory effects of garlic reveal conflicting data as to pro- or anti-inflammatory responses depending on the particular experimental set-ups and the garlic preparation used (i.e. garlic extract versus chemically pure garlic compounds). Here we provide an overview of the chemistry of the major garlic organosulfur compounds, summarize the current understanding and propose a link between the immunomodulating activity of garlic and the prevention of cancer. We hypothesize that garlic rather elicits anti-inflammatory and anti-oxidative responses that aid in priming the organism towards eradication of an emerging tumor. PMID:24237225

Vibrational spectroscopic, molecular docking and quantum chemical studies on 6-aminonicotinamide

NASA Astrophysics Data System (ADS)

Mohamed Asath, R.; Premkumar, S.; Mathavan, T.; Milton Franklin Benial, A.

2017-04-01

The most stable molecular structure of 6-aminonicotinamide (ANA) molecule was predicted by conformational analysis and vibrational spectral analysis was carried out by experimental and theoretical methods. The calculated and experimentally observed vibrational frequencies were assigned and compared. The π→π* electronic transition of the molecule was predicted by theoretically calculated ultraviolet-visible spectra in gas and liquid phase and further validated experimentally using ethanol as a solvent. Frontier molecular orbitals analysis was carried out to probe the reactive nature of the ANA molecule and further the site selectivity to specific chemical reactions were effectively analyzed by Fukui function calculation. The molecular electrostatic potential surface was simulated to confirm the reactive sites of the molecule. The natural bond orbital analysis was also performed to understand the intra molecular interactions, which confirms the bioactivity of the ANA molecule. Neuroprotective nature of the ANA molecule was analyzed by molecular docking analysis and the ANA molecule was identified as a good inhibitor against Alzheimer's disease.

Space Weathering in Houston: A Role for the Experimental Impact Laboratory at JSC

NASA Technical Reports Server (NTRS)

Cintala, M. J.; Keller, L. P.; Christoffersen, R.; Hoerz, F.

2015-01-01

The effective investigation of space weathering demands an interdisciplinary approach that is at least as diversified as any other in planetary science. Because it is a macroscopic process affecting all bodies in the solar system, impact and its resulting shock effects must be given detailed attention in this regard. Direct observation of the effects of impact is most readily done for the Moon, but it still remains difficult for other bodies in the solar system. Analyses of meteorites and precious returned samples provide clues for space weathering on asteroids, but many deductions arising from those studies must still be considered circumstantial. Theoretical work is also indispensable, but it can only go as far as the sometimes meager data allow. Experimentation, however, can permit near real-time study of myriad processes that could contribute to space weathering. This contribution describes some of the capabilities of the Johnson Space Center's Experimental Impact Laboratory (EIL) and how they might help in understanding the space weathering process.

Systematic computational and experimental investigation of lithium-ion transport mechanisms in polyester-based polymer electrolytes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Webb, Michael A.; Jung, Yukyung; Pesko, Danielle M.

Understanding the mechanisms of lithium-ion transport in polymers is crucial for the design of polymer electrolytes. We combine modular synthesis, electrochemical characterization, and molecular simulation to investigate lithium-ion transport in a new family of polyester-based polymers and in poly(ethylene oxide) (PEO). Theoretical predictions of glass-transition temperatures and ionic conductivities in the polymers agree well with experimental measurements. Interestingly, both the experiments and simulations indicate that the ionic conductivity of PEO, relative to the polyesters, is far higher than would be expected from its relative glass-transition temperature. The simulations reveal that diffusion of the lithium cations in the polyesters proceeds viamore » a different mechanism than in PEO, and analysis of the distribution of available cation solvation sites in the various polymers provides a novel and intuitive way to explain the experimentally observed ionic conductivities. This work provides a platform for the evaluation and prediction of ionic conductivities in polymer electrolyte materials.« less

Interaction of cinnamic acid derivatives with β-cyclodextrin in water: experimental and molecular modeling studies.

PubMed

Liu, Benguo; Zeng, Jie; Chen, Chen; Liu, Yonglan; Ma, Hanjun; Mo, Haizhen; Liang, Guizhao

2016-03-01

Cyclodextrins (CDs) can be used to improve the solubility and stability of cinnamic acid derivatives (CAs). However, there was no detailed report about understanding the effects of the substituent groups in the benzene ring on the inclusion behavior between CAs and CDs in aqueous solution. Here, the interaction of β-CD with CAs, including caffeic acid, ferulic acid, and p-coumaric acid, in water was investigated by phase-solubility method, UV, fluorescence, and (1)H NMR spectroscopy, together with ONIOM (our Own N-layer Integrated Orbital molecular Mechanics)-based QM/MM (Quantum Mechanics/Molecular Mechanics) calculations. Experimental results demonstrated that CAs could form 1:1 stoichiometric inclusion complex with β-CD by non-covalent bonds, and that the maximum apparent stability constants were found in caffeic acid (176M(-1)) followed by p-coumaric acid (160M(-1)) and ferulic acid (133M(-1)). Moreover, our calculations reasonably illustrated the binding orientations of β-CD with CAs determined by experimental observations. Copyright © 2015. Published by Elsevier Ltd.

Microwave photonics with superconducting quantum circuits

NASA Astrophysics Data System (ADS)

Gu, Xiu; Kockum, Anton Frisk; Miranowicz, Adam; Liu, Yu-xi; Nori, Franco

2017-11-01

In the past 20 years, impressive progress has been made both experimentally and theoretically in superconducting quantum circuits, which provide a platform for manipulating microwave photons. This emerging field of superconducting quantum microwave circuits has been driven by many new interesting phenomena in microwave photonics and quantum information processing. For instance, the interaction between superconducting quantum circuits and single microwave photons can reach the regimes of strong, ultra-strong, and even deep-strong coupling. Many higher-order effects, unusual and less familiar in traditional cavity quantum electrodynamics with natural atoms, have been experimentally observed, e.g., giant Kerr effects, multi-photon processes, and single-atom induced bistability of microwave photons. These developments may lead to improved understanding of the counterintuitive properties of quantum mechanics, and speed up applications ranging from microwave photonics to superconducting quantum information processing. In this article, we review experimental and theoretical progress in microwave photonics with superconducting quantum circuits. We hope that this global review can provide a useful roadmap for this rapidly developing field.

Optimization of cold-adapted lysozyme production from the psychrophilic yeast Debaryomyces hansenii using statistical experimental methods.

PubMed

Wang, Quanfu; Hou, Yanhua; Yan, Peisheng

2012-06-01

Statistical experimental designs were employed to optimize culture conditions for cold-adapted lysozyme production of a psychrophilic yeast Debaryomyces hansenii. In the first step of optimization using Plackett-Burman design (PBD), peptone, glucose, temperature, and NaCl were identified as significant variables that affected lysozyme production, the formula was further optimized using a four factor central composite design (CCD) to understand their interaction and to determine their optimal levels. A quadratic model was developed and validated. Compared to the initial level (18.8 U/mL), the maximum lysozyme production (65.8 U/mL) observed was approximately increased by 3.5-fold under the optimized conditions. Cold-adapted lysozymes production was first optimized using statistical experimental methods. A 3.5-fold enhancement of microbial lysozyme was gained after optimization. Such an improved production will facilitate the application of microbial lysozyme. Thus, D. hansenii lysozyme may be a good and new resource for the industrial production of cold-adapted lysozymes. © 2012 Institute of Food Technologists®

Impact of E × B flow shear on turbulence and resulting power fall-off width in H-mode plasmas in experimental advanced superconducting tokamak

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Q. Q., E-mail: yangqq@ipp.ac.cn; Zhong, F. C., E-mail: gsxu@ipp.ac.cn, E-mail: fczhong@dhu.edu.cn; Jia, M. N.

2015-06-15

The power fall-off width in the H-mode scrape-off layer (SOL) in tokamaks shows a strong inverse dependence on the plasma current, which was noticed by both previous multi-machine scaling work [T. Eich et al., Nucl. Fusion 53, 093031 (2013)] and more recent work [L. Wang et al., Nucl. Fusion 54, 114002 (2014)] on the Experimental Advanced Superconducting Tokamak. To understand the underlying physics, probe measurements of three H-mode discharges with different plasma currents have been studied in this work. The results suggest that a higher plasma current is accompanied by a stronger E×B shear and a shorter radial correlation lengthmore » of turbulence in the SOL, thus resulting in a narrower power fall-off width. A simple model has also been applied to demonstrate the suppression effect of E×B shear on turbulence in the SOL and shows relatively good agreement with the experimental observations.« less

Experimental and numerical investigation of the effective electrical conductivity of nitrogen-doped graphene nanofluids

NASA Astrophysics Data System (ADS)

Mehrali, Mohammad; Sadeghinezhad, Emad; Rashidi, Mohammad Mehdi; Akhiani, Amir Reza; Tahan Latibari, Sara; Mehrali, Mehdi; Metselaar, Hendrik Simon Cornelis

2015-06-01

Electrical conductivity is an important property for technological applications of nanofluids that have not been widely investigated, and few studies have been concerned about the electrical conductivity. In this study, nitrogen-doped graphene (NDG) nanofluids were prepared using the two-step method in an aqueous solution of 0.025 wt% Triton X-100 as a surfactant at several concentrations (0.01, 0.02, 0.04, 0.06 wt%). The electrical conductivity of the aqueous NDG nanofluids showed a linear dependence on the concentration and increased up to 1814.96 % for a loading of 0.06 wt% NDG nanosheet. From the experimental data, empirical models were developed to express the electrical conductivity as functions of temperature and concentration. It was observed that increasing the temperature has much greater effect on electrical conductivity enhancement than increasing the NDG nanosheet loading. Additionally, by considering the electrophoresis of the NDG nanosheets, a straightforward electrical conductivity model is established to modulate and understand the experimental results.

Systematic computational and experimental investigation of lithium-ion transport mechanisms in polyester-based polymer electrolytes

DOE PAGES

Webb, Michael A.; Jung, Yukyung; Pesko, Danielle M.; ...

2015-07-10

Understanding the mechanisms of lithium-ion transport in polymers is crucial for the design of polymer electrolytes. We combine modular synthesis, electrochemical characterization, and molecular simulation to investigate lithium-ion transport in a new family of polyester-based polymers and in poly(ethylene oxide) (PEO). Theoretical predictions of glass-transition temperatures and ionic conductivities in the polymers agree well with experimental measurements. Interestingly, both the experiments and simulations indicate that the ionic conductivity of PEO, relative to the polyesters, is far higher than would be expected from its relative glass-transition temperature. The simulations reveal that diffusion of the lithium cations in the polyesters proceeds viamore » a different mechanism than in PEO, and analysis of the distribution of available cation solvation sites in the various polymers provides a novel and intuitive way to explain the experimentally observed ionic conductivities. This work provides a platform for the evaluation and prediction of ionic conductivities in polymer electrolyte materials.« less

Kinetic Monte Carlo simulations of scintillation processes in NaI(Tl)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kerisit, Sebastien N.; Wang, Zhiguo; Williams, Richard

2014-04-26

Developing a comprehensive understanding of the processes that govern the scintillation behavior of inorganic scintillators provides a pathway to optimize current scintillators and allows for the science-driven search for new scintillator materials. Recent experimental data on the excitation density dependence of the light yield of inorganic scintillators presents an opportunity to incorporate parameterized interactions between excitations in scintillation models and thus enable more realistic simulations of the nonproportionality of inorganic scintillators. Therefore, a kinetic Monte Carlo (KMC) model of elementary scintillation processes in NaI(Tl) is developed in this work to simulate the kinetics of scintillation for a range of temperaturesmore » and Tl concentrations as well as the scintillation efficiency as a function of excitation density. The ability of the KMC model to reproduce available experimental data allows for elucidating the elementary processes that give rise to the kinetics and efficiency of scintillation observed experimentally for a range of conditions.« less

Experimental and Numerical Study on the Tensile Behaviour of UACS/Al Fibre Metal Laminate

NASA Astrophysics Data System (ADS)

Xue, Jia; Wang, Wen-Xue; Zhang, Jia-Zhen; Wu, Su-Jun; Li, Hang

2015-10-01

A new fibre metal laminate fabricated with aluminium sheets and unidirectionally arrayed chopped strand (UACS) plies is proposed. The UACS ply is made by cutting parallel slits into a unidirectional carbon fibre prepreg. The UACS/Al laminate may be viewed as aluminium laminate reinforced by highly aligned, discontinuous carbon fibres. The tensile behaviour of UACS/Al laminate, including thermal residual stress and failure progression, is investigated through experiments and numerical simulation. Finite element analysis was used to simulate the onset and propagation of intra-laminar fractures occurring within slits of the UACS plies and delamination along the interfaces. The finite element models feature intra-laminar cohesive elements inserted into the slits and inter-laminar cohesive elements inserted at the interfaces. Good agreement are obtained between experimental results and finite element analysis, and certain limitations of the finite element models are observed and discussed. The combined experimental and numerical studies provide a detailed understanding of the tensile behaviour of UACS/Al laminates.

New Experimental Capabilities and Theoretical Insights of High Pressure Compression Waves

NASA Astrophysics Data System (ADS)

Orlikowski, Daniel; Nguyen, Jeffrey H.; Patterson, J. Reed; Minich, Roger; Martin, L. Peter; Holmes, Neil C.

2007-12-01

Currently there are three platforms that offer quasi-isentropic compression or ramp-wave compression (RWC): light-gas gun, magnetic flux (Z-pinch), and laser. We focus here on the light-gas gun technique and on some current theoretical insights from experimental data. An impedance gradient through the length of the impactor provides the pressure pulse upon impact to the subject material. Applications and results are given concerning high-pressure strength and the liquid-to-solid, phase transition of water giving its first associated phase fraction history. We also introduce the Korteweg-deVries-Burgers equation as a means to understand the evolution of these RWC waves as they propagate through the thickness of the subject material. This model equation has the necessary competition between non-linear, dispersion, and dissipation processes, which is shown through observed structures that are manifested in the experimental particle velocity histories. Such methodology points towards a possibility of quantifying dissipation, through which RWC experiments may be analyzed.

Fundamental phenomena on fuel decomposition and boundary layer combustion processes with applications to hybrid rocket motors

NASA Technical Reports Server (NTRS)

Kuo, Kenneth K.; Lu, Y. C.; Chiaverini, Martin J.; Harting, George C.

1994-01-01

An experimental study on the fundamental processes involved in fuel decomposition and boundary layer combustion in hybrid rocket motors is being conducted at the High Pressure Combustion Laboratory of the Pennsylvania State University. This research should provide an engineering technology base for development of large scale hybrid rocket motors as well as a fundamental understanding of the complex processes involved in hybrid propulsion. A high pressure slab motor has been designed for conducting experimental investigations. Oxidizer (LOX or GOX) is injected through the head-end over a solid fuel (HTPB) surface. Experiments using fuels supplied by NASA designated industrial companies will also be conducted. The study focuses on the following areas: measurement and observation of solid fuel burning with LOX or GOX, correlation of solid fuel regression rate with operating conditions, measurement of flame temperature and radical species concentrations, determination of the solid fuel subsurface temperature profile, and utilization of experimental data for validation of a companion theoretical study also being conducted at PSU.

Systematic Computational and Experimental Investigation of Lithium-Ion Transport Mechanisms in Polyester-Based Polymer Electrolytes

PubMed Central

2015-01-01

Understanding the mechanisms of lithium-ion transport in polymers is crucial for the design of polymer electrolytes. We combine modular synthesis, electrochemical characterization, and molecular simulation to investigate lithium-ion transport in a new family of polyester-based polymers and in poly(ethylene oxide) (PEO). Theoretical predictions of glass-transition temperatures and ionic conductivities in the polymers agree well with experimental measurements. Interestingly, both the experiments and simulations indicate that the ionic conductivity of PEO, relative to the polyesters, is far higher than would be expected from its relative glass-transition temperature. The simulations reveal that diffusion of the lithium cations in the polyesters proceeds via a different mechanism than in PEO, and analysis of the distribution of available cation solvation sites in the various polymers provides a novel and intuitive way to explain the experimentally observed ionic conductivities. This work provides a platform for the evaluation and prediction of ionic conductivities in polymer electrolyte materials. PMID:27162971

Experimentally testing and assessing the predictive power of species assembly rules for tropical canopy ants

PubMed Central

Fayle, Tom M; Eggleton, Paul; Manica, Andrea; Yusah, Kalsum M; Foster, William A

2015-01-01

Understanding how species assemble into communities is a key goal in ecology. However, assembly rules are rarely tested experimentally, and their ability to shape real communities is poorly known. We surveyed a diverse community of epiphyte-dwelling ants and found that similar-sized species co-occurred less often than expected. Laboratory experiments demonstrated that invasion was discouraged by the presence of similarly sized resident species. The size difference for which invasion was less likely was the same as that for which wild species exhibited reduced co-occurrence. Finally we explored whether our experimentally derived assembly rules could simulate realistic communities. Communities simulated using size-based species assembly exhibited diversities closer to wild communities than those simulated using size-independent assembly, with results being sensitive to the combination of rules employed. Hence, species segregation in the wild can be driven by competitive species assembly, and this process is sufficient to generate observed species abundance distributions for tropical epiphyte-dwelling ants. PMID:25622647

Elastic Properties of Orthoenstatite at Simultaneous High Pressure-Temperature Conditions and the Implication for the Origin of Low VP/VS Zones in the Mantle Wedge

NASA Astrophysics Data System (ADS)

Qian, W.; Wang, W.; Zou, F.; Wu, Z.

2017-12-01

The compositions of the Earth's interiors are critical in understanding the origin and evolution of the Earth and its geodynamics. Orthopyroxene is an important component for the upper mantle both in pyrolite model and in piclogite model. Furthermore, many evidences suggest the local enrichment of opx in the upper mantle. Therefore, its thermodynamic and elastic properties are fundamental for understanding of chemical compositions and dynamics of the upper mantle. We obtain the elastic properties of orthoenstatite (MgSiO3), Mg end-member orthopyroxene with space group Pbca, up to 20 GPa and 2000 K using first principles calculations with local density approximation (LDA). The calculated results are in good agreement with previous available experimental measurements and theoretical results. Both bulk and shear modulus show noticeable nonlinear pressure dependence, and the softening of shear wave velocities is prominent at high pressure. Meanwhile, orthoenstatite exhibits a negative temperature derivate of VP/VS ratios. This is different from other upper mantle minerals, such as olivine, ringwoodite and garnet, whose VP/VS increase with the increasing of the temperature. Compared to other major minerals in the upper mantle, orthoenstatite shows the lowest compressional velocities, shear velocities, and VP/VS (<1.7) ratio up to the depth of 200 km. Recently, many seismic studies have observed unusual low VP/VS (below 1.72) zones in subduction mantle wedge and orthopyroxene has been proposed to be a possible interpretation of this unusual observed. However, this explanation is still under debate because no experimental or calculated elastic data at the conditions of the upper mantle are available before. Our calculations show that VS and VP/VS ratio of orthoenstatite under the mantle wedge conditions (2-3 GPa and 1073-1723 K) are consistent of the unusual seismic observations of VP/VS in subduction mantle wedge. Therefore, the enrichment of orthopyroxene may potentially account for the observed low VP/VS in the mantle wedge.

Lateral Interactions in Monolayer Thick Mercury Films

NASA Astrophysics Data System (ADS)

Kime, Yolanda Jan

An understanding of lateral adatom-adatom interactions is often an important part of understanding electronic structure and adsorption energetics in monolayer thick films. In this dissertation I use angle-resolved photoemission and thermal desorption spectroscopies to explore the relationship between the adatom-adatom interaction and other characteristics of the adlayer, such as electronic structure, defects, or coexistent structural phases in the adlayer. Since Hg binds weakly to many substrates, the lateral interactions are often a major contribution to the dynamics of the overlayer. Hg adlayer systems are thus ideal for probing lateral interactions. The electronic structures of Hg adlayers on Ag(100), Cu(100), and Cu_3Au(100) are studied with angle-resolved ultraviolet photoemission. The Hg atomic 5d_{5/2} electronic band is observed to split into two levels following adsorption onto some surfaces. The energetic splitting of the Hg 5d_{5/2} level is found to be directly correlated to the adlayer homogeneous strain energy. The existence of the split off level also depends on the order or disorder of the Hg adlayer. The energetics of Hg adsorption on Cu(100) are probed using thermal desorption spectroscopy. Two different ordered adlayer structures are observed for Hg adsorption on Cu(100) at 200 K. Under some adsorption conditions and over a range of exposures, the two phases are seen to coexist on the surface prior to the thermal desorption process. A phase transition from the more dense to the less dense phase is observed to occur during the thermal desorption process. Inherent differences in defect densities are responsible for the observed differences between lateral interactions measured previously with equilibrium (atom beam scattering) and as measured by the non-equilibrium (thermal desorption) technique reported here. Theoretical and experimental evidence for an indirect through-metal interaction between adatoms is also discussed. Although through-metal interactions may play a role in some adsorption systems, there is little compelling evidence that this effect is significant in many experimental reports where the through metal bond is invoked.

Promoting students' conceptual understanding using STEM-based e-book

NASA Astrophysics Data System (ADS)

Komarudin, U.; Rustaman, N. Y.; Hasanah, L.

2017-05-01

This study aims to examine the effect of Science, Technology, Engineering, and Mathematics (STEM) based e-book in promoting students'conceptual understanding on lever system in human body. The E-book used was the e-book published by National Ministry of Science Education. The research was conducted by a quasi experimental with pretest and posttest design. The subjects consist of two classes of 8th grade junior high school in Pangkalpinang, Indonesia, which were devided into experimental group (n=34) and control group (n=32). The students in experimental group was taught by STEM-based e-book, while the control group learned by non STEM-based e-book. The data was collected by an instrument pretest and postest. Pretest and posttest scored, thenanalyzed using descriptive statistics and independent t-test. The result of independent sample t-test shows that no significant differenceson students' pretest score between control and experimental group. However, there were significant differences on students posttest score and N-gain score between control and experimental group with sig = 0.000(p<0.005). N-gain analysis showsthe higher performance of students who were participated in experimental group (mean = 66.03) higher compared to control group (mean = 47.66) in answering conceptual understanding questions. Based on the results, it can be concluded that STEM-based e-book has positiveimpact in promoting students' understanding on lever system in human body. Therefore this learning approach is potential to be used as an alternative to triger the enhancement of students' understanding in science.

The impact of rigorous mathematical thinking as learning method toward geometry understanding

NASA Astrophysics Data System (ADS)

Nugraheni, Z.; Budiyono, B.; Slamet, I.

2018-05-01

To reach higher order thinking skill, needed to be mastered the conceptual understanding. RMT is a unique realization of the cognitive conceptual construction approach based on Mediated Learning Experience (MLE) theory by Feurstein and Vygotsky’s sociocultural theory. This was quasi experimental research which was comparing the experimental class that was given Rigorous Mathematical Thinking (RMT) as learning method and control class that was given Direct Learning (DL) as the conventional learning activity. This study examined whether there was different effect of two learning method toward conceptual understanding of Junior High School students. The data was analyzed by using Independent t-test and obtained a significant difference of mean value between experimental and control class on geometry conceptual understanding. Further, by semi-structure interview known that students taught by RMT had deeper conceptual understanding than students who were taught by conventional way. By these result known that Rigorous Mathematical Thinking (RMT) as learning method have positive impact toward Geometry conceptual understanding.

Terahertz radiation induces non-thermal structural changes associated with Fröhlich condensation in a protein crystal

PubMed Central

Lundholm, Ida V.; Rodilla, Helena; Wahlgren, Weixiao Y.; Duelli, Annette; Bourenkov, Gleb; Vukusic, Josip; Friedman, Ran; Stake, Jan; Schneider, Thomas; Katona, Gergely

2015-01-01

Whether long-range quantum coherent states could exist in biological systems, and beyond low-temperature regimes where quantum physics is known to be applicable, has been the subject to debate for decades. It was proposed by Fröhlich that vibrational modes within protein molecules can order and condense into a lowest-frequency vibrational mode in a process similar to Bose-Einstein condensation, and thus that macroscopic coherence could potentially be observed in biological systems. Despite the prediction of these so-called Fröhlich condensates almost five decades ago, experimental evidence thereof has been lacking. Here, we present the first experimental observation of Fröhlich condensation in a protein structure. To that end, and to overcome the challenges associated with probing low-frequency molecular vibrations in proteins (which has hampered understanding of their role in proteins' function), we combined terahertz techniques with a highly sensitive X-ray crystallographic method to visualize low-frequency vibrational modes in the protein structure of hen-egg white lysozyme. We found that 0.4 THz electromagnetic radiation induces non-thermal changes in electron density. In particular, we observed a local increase of electron density in a long α-helix motif consistent with a subtle longitudinal compression of the helix. These observed electron density changes occur at a low absorption rate indicating that thermalization of terahertz photons happens on a micro- to milli-second time scale, which is much slower than the expected nanosecond time scale due to damping of delocalized low frequency vibrations. Our analyses show that the micro- to milli-second lifetime of the vibration can only be explained by Fröhlich condensation, a phenomenon predicted almost half a century ago, yet never experimentally confirmed. PMID:26798828

Terahertz radiation induces non-thermal structural changes associated with Fröhlich condensation in a protein crystal.

PubMed

Lundholm, Ida V; Rodilla, Helena; Wahlgren, Weixiao Y; Duelli, Annette; Bourenkov, Gleb; Vukusic, Josip; Friedman, Ran; Stake, Jan; Schneider, Thomas; Katona, Gergely

2015-09-01

Whether long-range quantum coherent states could exist in biological systems, and beyond low-temperature regimes where quantum physics is known to be applicable, has been the subject to debate for decades. It was proposed by Fröhlich that vibrational modes within protein molecules can order and condense into a lowest-frequency vibrational mode in a process similar to Bose-Einstein condensation, and thus that macroscopic coherence could potentially be observed in biological systems. Despite the prediction of these so-called Fröhlich condensates almost five decades ago, experimental evidence thereof has been lacking. Here, we present the first experimental observation of Fröhlich condensation in a protein structure. To that end, and to overcome the challenges associated with probing low-frequency molecular vibrations in proteins (which has hampered understanding of their role in proteins' function), we combined terahertz techniques with a highly sensitive X-ray crystallographic method to visualize low-frequency vibrational modes in the protein structure of hen-egg white lysozyme. We found that 0.4 THz electromagnetic radiation induces non-thermal changes in electron density. In particular, we observed a local increase of electron density in a long α-helix motif consistent with a subtle longitudinal compression of the helix. These observed electron density changes occur at a low absorption rate indicating that thermalization of terahertz photons happens on a micro- to milli-second time scale, which is much slower than the expected nanosecond time scale due to damping of delocalized low frequency vibrations. Our analyses show that the micro- to milli-second lifetime of the vibration can only be explained by Fröhlich condensation, a phenomenon predicted almost half a century ago, yet never experimentally confirmed.

Exploring the effects of particle size and shape on ejecta production in response to low-velocity impacts

NASA Astrophysics Data System (ADS)

Dove, A.; Barsoum, C.; Colwell, J. E.

2016-12-01

Understanding and predicting the complex behavior of granular material on planetary surfaces requires a combination of complementary experimental and numerical simulations. Such an approach allows us to use experimental results to empirically model the behavior of complex systems, and feed these results into simulations that can be run over a broader range of conditions. Studies of the response of granular systems, particularly planetary regolith and regolith simulants, to low-energy impacts is relevant to surface layers on planetary bodies, including asteroids, small moons, planetesimals, and planetary ring particles. Knowledge of the velocities and mass distributions of dust knocked off of planetary surfaces is necessary to understand the evolution of the upper layers of the soil, and to develop mitigation strategies for transported dust. In addition, the fine particles in the regolith pose an engineering and safety hazard for equipment, experiments, and astronauts working in severe environments. We will present the results of extended testing with a number of combinations of impactor and particle composition and morphology. A spherical glass or brass impactor is used for all experiments, which impacts a particle bed at a few m/s. This study includes three main particle material types - acrylic (used for comparison with initial modeling and previous experiments), glass, and stainless steel. We directly compare the results of these experiments by using 2mm spherical particles of each material type. Additionally, we vary the glass particle sizes between 1-3mm in order to analyze the effect of size on the cratering and ejecta properties. Finally, we varied the stainless steel particle shape from spherical to elongated cylinders with 2mm diameter and 2, 4, and 6 mm lengths. Here, we will focus on the experimental portion of this work - future results will elaborate upon the simulation validation. Interpretation of these results was informed by initial comparisons between the experimental observations and the numerical simulations, which allowed us to characterize the observational biases in the ejecta velocity and angle distributions.

The effect of surface tension, superheat and surface films on the rate of heat transfer from an iron droplet to a water cooled copper mold

NASA Astrophysics Data System (ADS)

Phinichka, Natthapong

In strip casting the cast surface forms during the initial stage of solidification and the phenomenon that occurs during the first 50 milliseconds of contact time between the liquid steel and the mold define the cast surface and its quality. However the exact mechanism of the initial solidification and the process variables that affect initial solidification phenomena during that time are not well understood. The primary goal of this work is to develop a fundamental understanding of factors controlling strip casting. The purpose of the experimental study is to better understand the role of processing parameters on initial solidification phenomena, heat transfer rate and the formation of the cast steel surface. An investigation was made to evaluate the heat transfer rate of different kinds of steels. The experimental apparatus was designed for millisecond resolution of heat transfer behavior. A novel approach of simultaneous in-situ observation and measurement of rapid heat transfer was developed and enabled a coupling between the interfacial heat transfer rate and droplet solidification rate. The solidification rate was estimated from the varying position of the solidification front as captured by a CCD camera. The effects of experimental parameters such as melt superheat, sulfur content and oxide accumulation at the interface on measured heat flux were studied. It was found that the heat flux increased slightly when the percent of sulfur and increased significantly when superheat increased. The oxide accumulation at the interface was found to be manganese and silicon based oxide. When the liquid steel droplets were ejected onto the copper substrate repeatedly, without cleaning the substrate surface between the ejections, a large increase in the interfacial heat flux was observed. The results of the film study indicated that a liquid oxide film existed at the interface. The surface roughness measurement of the solidified specimen decreased with repeated experimentation and better contact between the droplet and the mold was found to be the cause of the improved heat transfer rate.

Direct observation and imaging of a spin-wave soliton with p-like symmetry

NASA Astrophysics Data System (ADS)

Bonetti, S.; Kukreja, R.; Chen, Z.; Macià, F.; Hernàndez, J. M.; Eklund, A.; Backes, D.; Frisch, J.; Katine, J.; Malm, G.; Urazhdin, S.; Kent, A. D.; Stöhr, J.; Ohldag, H.; Dürr, H. A.

2015-11-01

Spin waves, the collective excitations of spins, can emerge as nonlinear solitons at the nanoscale when excited by an electrical current from a nanocontact. These solitons are expected to have essentially cylindrical symmetry (that is, s-like), but no direct experimental observation exists to confirm this picture. Using a high-sensitivity time-resolved magnetic X-ray microscopy with 50 ps temporal resolution and 35 nm spatial resolution, we are able to create a real-space spin-wave movie and observe the emergence of a localized soliton with a nodal line, that is, with p-like symmetry. Micromagnetic simulations explain the measurements and reveal that the symmetry of the soliton can be controlled by magnetic fields. Our results broaden the understanding of spin-wave dynamics at the nanoscale, with implications for the design of magnetic nanodevices.

Experimental observation of phase-flip transitions in the brain

NASA Astrophysics Data System (ADS)

Dotson, Nicholas M.; Gray, Charles M.

2016-10-01

The phase-flip transition has been demonstrated in a host of coupled nonlinear oscillator models, many pertaining directly to understanding neural dynamics. However, there is little evidence that this phenomenon occurs in the brain. Using simultaneous microelectrode recordings in the nonhuman primate cerebral cortex, we demonstrate the presence of phase-flip transitions between oscillatory narrow-band local field potential signals separated by several centimeters. Specifically, we show that sharp transitions between in-phase and antiphase synchronization are accompanied by a jump in synchronization frequency. These findings are significant for two reasons. First, they validate predictions made by model systems. Second, they have potentially far reaching implications for our understanding of the mechanisms underlying corticocortical communication, which are thought to rely on narrow-band oscillatory synchronization with specific relative phase relationships.

Dendritic integration: 60 years of progress.

PubMed

Stuart, Greg J; Spruston, Nelson

2015-12-01

Understanding how individual neurons integrate the thousands of synaptic inputs they receive is critical to understanding how the brain works. Modeling studies in silico and experimental work in vitro, dating back more than half a century, have revealed that neurons can perform a variety of different passive and active forms of synaptic integration on their inputs. But how are synaptic inputs integrated in the intact brain? With the development of new techniques, this question has recently received substantial attention, with new findings suggesting that many of the forms of synaptic integration observed in vitro also occur in vivo, including in awake animals. Here we review six decades of progress, which collectively highlights the complex ways that single neurons integrate their inputs, emphasizing the critical role of dendrites in information processing in the brain.

Modeling and Simulation of Nanoindentation

NASA Astrophysics Data System (ADS)

Huang, Sixie; Zhou, Caizhi

2017-11-01

Nanoindentation is a hardness test method applied to small volumes of material which can provide some unique effects and spark many related research activities. To fully understand the phenomena observed during nanoindentation tests, modeling and simulation methods have been developed to predict the mechanical response of materials during nanoindentation. However, challenges remain with those computational approaches, because of their length scale, predictive capability, and accuracy. This article reviews recent progress and challenges for modeling and simulation of nanoindentation, including an overview of molecular dynamics, the quasicontinuum method, discrete dislocation dynamics, and the crystal plasticity finite element method, and discusses how to integrate multiscale modeling approaches seamlessly with experimental studies to understand the length-scale effects and microstructure evolution during nanoindentation tests, creating a unique opportunity to establish new calibration procedures for the nanoindentation technique.

A Validated Multiscale In-Silico Model for Mechano-sensitive Tumour Angiogenesis and Growth

PubMed Central

Loizidou, Marilena; Stylianopoulos, Triantafyllos; Hawkes, David J.

2017-01-01

Vascularisation is a key feature of cancer growth, invasion and metastasis. To better understand the governing biophysical processes and their relative importance, it is instructive to develop physiologically representative mathematical models with which to compare to experimental data. Previous studies have successfully applied this approach to test the effect of various biochemical factors on tumour growth and angiogenesis. However, these models do not account for the experimentally observed dependency of angiogenic network evolution on growth-induced solid stresses. This work introduces two novel features: the effects of hapto- and mechanotaxis on vessel sprouting, and mechano-sensitive dynamic vascular remodelling. The proposed three-dimensional, multiscale, in-silico model of dynamically coupled angiogenic tumour growth is specified to in-vivo and in-vitro data, chosen, where possible, to provide a physiologically consistent description. The model is then validated against in-vivo data from murine mammary carcinomas, with particular focus placed on identifying the influence of mechanical factors. Crucially, we find that it is necessary to include hapto- and mechanotaxis to recapitulate observed time-varying spatial distributions of angiogenic vasculature. PMID:28125582

Evaluating the Liquid Liquid Phase Transition Hypothesis of Supercoooled Water

NASA Astrophysics Data System (ADS)

Limmer, David; Chandler, David

2011-03-01

To explain the anomalous behavior of supercooled water it has been conjectured that buried within an experimentally inaccessible region of liquid water's phase diagram there exists a second critical point, which is the terminus of a first order transition line between two distinct liquid phases. The so-called liquid-liquid phase transition (LLPT) has since generated much study, though to date there is no consensus on its existence. In this talk, we will discuss our efforts to systematically study the metastable phase diagram of supercooled water through computer simulation. By employing importance-sampling techniques, we have calculated free energies as a function of the density and long-range order to determine unambiguously if two distinct liquid phases exist. We will argue that, contrary to the LLPT hypothesis, the observed phenomenology can be understood as a consequence of the limit of stability of the liquid far away from coexistence. Our results suggest that homogeneous nucleation is the cause of the increased fluctuations present upon supercooling. Further we will show how this understanding can be extended to explain experimental observations of hysteresis in confined supercooled water systems.

Spectral broadening of optical transitions in InAs/GaAs coupled quantum dot pairs

NASA Astrophysics Data System (ADS)

Kumar, P.; Czarnocki, C.; Jennings, C.; Casara, J.; Monteros, A. L.; Zahbihi, N.; Scheibner, M.; Economou, S. E.; Bracker, A. S.; Pursley, B. C.; Gammon, D.; Carter, S. G.

The optical transitions in InAs/GaAs coupled quantum dot (CQD) pairs are investigated experimentally. These coupled dot systems provide new means to study the interaction of quantum states with the mechanical modes of the crystal environment. Here, the line width and line shape of CQD optical transitions are analyzed in detail as a function of temperature, excitation power, excitation energy, and tunnel coupling strength. A significant line broadening, up to 25 times the typical lifetime-limited linewidth of single-dot excitons, is being observed at level anti-crossings where the coherent tunnel coupling between spatially direct and indirect exciton states is considerable. The experimental observations are compared with theoretical predictions where linewidth broadening at anti-crossings is attributed to the phonon assisted transitions, and found to be strongly dependent on the energy splitting of the two exciton branches. This work focuses on understanding the linewidth broadening due to the pure dephasing, and fundamental aspects of the interaction of these systems with the local environment. This work was supported by the Defense Threat Reduction Agency, Basic Research Award HDTRA1-15-1-0011.

Theoretical and experimental models of the diffuse radar backscatter from Mars

NASA Technical Reports Server (NTRS)

England, A. W.

1995-01-01

The general objective for this work was to develop a theoretically and experimentally consistent explanation for the diffuse component of radar backscatter from Mars. The strength, variability, and wavelength independence of Mars' diffuse backscatter are unique among our Moon and the terrestrial planets. This diffuse backscatter is generally attributed to wavelength-scale surface roughness and to rock clasts within the Martian regolith. Through the combination of theory and experiment, the authors attempted to bound the range of surface characteristics that could produce the observed diffuse backscatter. Through these bounds they gained a limited capability for data inversion. Within this umbrella, specific objectives were: (1) To better define the statistical roughness parameters of Mars' surface so that they are consistent with observed radar backscatter data, and with the physical and chemical characteristics of Mars' surface as inferred from Mariner 9, the Viking probes, and Earth-based spectroscopy; (2) To better understand the partitioning between surface and volume scattering in the Mars regolith; (3) To develop computational models of Mars' radio emission that incorporate frequency dependent, surface and volume scattering.

Genetic programming based models in plant tissue culture: An addendum to traditional statistical approach.

PubMed

Mridula, Meenu R; Nair, Ashalatha S; Kumar, K Satheesh

2018-02-01

In this paper, we compared the efficacy of observation based modeling approach using a genetic algorithm with the regular statistical analysis as an alternative methodology in plant research. Preliminary experimental data on in vitro rooting was taken for this study with an aim to understand the effect of charcoal and naphthalene acetic acid (NAA) on successful rooting and also to optimize the two variables for maximum result. Observation-based modelling, as well as traditional approach, could identify NAA as a critical factor in rooting of the plantlets under the experimental conditions employed. Symbolic regression analysis using the software deployed here optimised the treatments studied and was successful in identifying the complex non-linear interaction among the variables, with minimalistic preliminary data. The presence of charcoal in the culture medium has a significant impact on root generation by reducing basal callus mass formation. Such an approach is advantageous for establishing in vitro culture protocols as these models will have significant potential for saving time and expenditure in plant tissue culture laboratories, and it further reduces the need for specialised background.

The Balloon Experimental Twin Telescope for Infrared Interferometry

NASA Technical Reports Server (NTRS)

Silverburg, Robert

2009-01-01

Astronomical studies at infrared wavelengths have dramatically improved our understanding of the universe, and observations with Spitzer, the upcoming Herschel mission, and SOFIA will continue to provide exciting new discoveries. The comparatively low spatial resolution of these missions, however, is insufficient to resolve the physical scales on which mid- to far-infrared emission arises, resulting in source and structure ambiguities that limit our ability to answer key science questions. Interferometry enables high angular resolution at these wavelengths. We have proposed a new high altitude balloon experiment, the Balloon Experimental Twin Telescope for Infrared Interferometry (BETTII). High altitude operation makes far-infrared (30- 300micron) observations possible, and BETTII's 8-meter baseline provides unprecedented angular resolution (approx. 0.5 arcsec) in this band. BETTII will use a double-Fourier instrument to simultaneously obtain both spatial and spectral information. The spatially resolved spectroscopy provided by BETTII will address key questions about the nature of disks in young cluster stars and active galactic nuclei and the envelopes of evolved stars. BETTII will also lay the groundwork for future space interferometers.

Multiscale Investigations of the Early Stage Oxidation on Cu Surfaces

NASA Astrophysics Data System (ADS)

Zhu, Qing; Xiao, Penghao; Lian, Xin; Yang, Shen-Che; Henkelman, Grame; Saidi, Wissam; Yang, Judith; University of Pittsburgh Team; University of Texas at Austin Team

Previous in situ TEM experiments have shown that the oxidation of the three low index Cu surfaces (100), (110) and (111) exhibit different oxide nucleation rates, and the resulting oxides have 3-dimensional (3D) island shapes or 2D rafts under different conditions. In order to better understand these results, we have investigated the early stages of Cu oxidation using a multiscale computational approach that employs density functional theory (DFT), reactive force field (ReaxFF), and kinetic Mote Carlo (KMC). With DFT calculation, we have compared O2 dissociation barriers on Cu (100), (110) and (111) surfaces at high oxygen coverage to evaluate the kinetic barrier of sublayer oxidization. We found that O2 dissociation barriers on Cu(111) surface are all lower than those on (110) and (100) surfaces. This trend agrees with experimental observations that (111) surface is easier to oxidize. These DFT calculated energy barriers are then incorporated into KMC simulations. The large scale ReaxFF molecular dynamics and KMC simulations detail the oxidation dynamics of the different Cu surfaces, and show the formation of various oxide morphologies that are consistent with experimental observations.

The Balloon Experimental Twin Telescope for Infrared Interferometry (BETTII): High Angular Resolution Astronomy at Far-Infrared Wavelengths

NASA Technical Reports Server (NTRS)

Rinehart, Stephen A.

2008-01-01

Astronomical studies at infrared wavelengths have dramatically improved our understanding of the universe, and observations with Spitzer, the upcoming Herschel mission. and SOFIA will continue to provide exciting new discoveries. The comparatively low spatial resolution of these missions, however. is insufficient to resolve the physical scales on which mid- to far-infrared emission arises, resulting in source and structure ambiguities that limit our ability to answer key science questions. Interferometry enables high angular resolution at these wavelengths. We have proposed a new high altitude balloon experiment, the Balloon Experimental Twin Telescope for Infrared Interferometry (BETTII). High altitude operation makes far-infrared (30- 300micron) observations possible, and BETTII's 8-meter baseline provides unprecedented angular resolution (-0.5 arcsec) in this band. BETTII will use a double- Fourier instrument to simultaneously obtain both spatial and spectral informatioT. he spatially resolved spectroscopy provided by BETTII will address key questions about the nature of disks in young cluster stars and active galactic nuclei and the envelopes of evolved stars. BETTII will also lay the groundwork for future space interferometers.

Mechanical output of myosin II motors is regulated by myosin filament size and actin network mechanics

NASA Astrophysics Data System (ADS)

Stam, Samantha; Alberts, Jonathan; Gardel, Margaret; Munro, Edwin

2013-03-01

The interactions of bipolar myosin II filaments with actin arrays are a predominate means of generating forces in numerous physiological processes including muscle contraction and cell migration. However, how the spatiotemporal regulation of these forces depends on motor mechanochemistry, bipolar filament size, and local actin mechanics is unknown. Here, we simulate myosin II motors with an agent-based model in which the motors have been benchmarked against experimental measurements. Force generation occurs in two distinct regimes characterized either by stable tension maintenance or by stochastic buildup and release; transitions between these regimes occur by changes to duty ratio and myosin filament size. The time required for building force to stall scales inversely with the stiffness of a network and the actin gliding speed of a motor. Finally, myosin motors are predicted to contract a network toward stiffer regions, which is consistent with experimental observations. Our representation of myosin motors can be used to understand how their mechanical and biochemical properties influence their observed behavior in a variety of in vitro and in vivo contexts.

Solder/Substrate Interfacial Reactions in the Sn-Cu-Ni Interconnection System

NASA Astrophysics Data System (ADS)

Yu, H.; Vuorinen, V.; Kivilahti, J. K.

2007-02-01

In order to obtain a better understanding of the effects of interconnection microstructures on the reliability of soldered assemblies, one of the most important ternary systems used in electronics, the Sn-Cu-Ni system, has been assessed thermodynamically. Based on the data obtained, some recent experimental observations related to the formation of interfacial intermetallic compounds in solder interconnections have been studied analytically. First, the effect of Cu content on the formation of the interfacial intermetallic compounds between the SnAgCu solder alloys and Ni substrate was investigated. The critical Cu content for (Cu,Ni)6Sn5 formation was evaluated as a function of temperature. Second, we analyzed how the Ni dissolved in the Cu6Sn5 compound affects the driving forces for the diffusion of components and hence the growth kinetics of (Cu,Ni)6Sn5 and (Cu,Ni)3Sn reaction layers. With the thermodynamic description, other experimental observations related to the Sn-Cu-Ni system can be rationalized as well. The system can be used also as a subsystem for industrially important higher order solder systems.

Measurement and modeling of CO2 mass transfer in brine at reservoir conditions

NASA Astrophysics Data System (ADS)

Shi, Z.; Wen, B.; Hesse, M. A.; Tsotsis, T. T.; Jessen, K.

2018-03-01

In this work, we combine measurements and modeling to investigate the application of pressure-decay experiments towards delineation and interpretation of CO2 solubility, uptake and mass transfer in water/brine systems at elevated pressures of relevance to CO2 storage operations in saline aquifers. Accurate measurements and modeling of mass transfer in this context are crucial to an improved understanding of the longer-term fate of CO2 that is injected into the subsurface for storage purposes. Pressure-decay experiments are presented for CO2/water and CO2/brine systems with and without the presence of unconsolidated porous media. We demonstrate, via high-resolution numerical calculations in 2-D, that natural convection will complicate the interpretation of the experimental observations if the particle size is not sufficiently small. In such settings, we demonstrate that simple 1-D interpretations can result in an overestimation of the uptake (diffusivity) by two orders of magnitude. Furthermore, we demonstrate that high-resolution numerical calculations agree well with the experimental observations for settings where natural convection contributes substantially to the overall mass transfer process.

Loading rate effect on mechanical properties of cervical spine ligaments.

PubMed

Trajkovski, Ana; Omerovic, Senad; Krasna, Simon; Prebil, Ivan

2014-01-01

Mechanical properties of cervical spine ligaments are of great importance for an accurate finite element model when analyzing the injury mechanism. However, there is still little experimental data in literature regarding fresh human cervical spine ligaments under physiological conditions. The focus of the present study is placed on three cervical spine ligaments that stabilize the spine and protect the spinal cord: the anterior longitudinal ligament, the posterior longitudinal ligament and the ligamentum flavum. The ligaments were tested within 24-48 hours after death, under two different loading rates. An increase trend in failure load, failure stress, stiffness and modulus was observed, but proved not to be significant for all ligament types. The loading rate had the highest impact on failure forces for all three ligaments (a 39.1% average increase was found). The observed increase trend, compared to the existing increase trends reported in literature, indicates the importance of carefully applying the existing experimental data, especially when creating scaling factors. A better understanding of the loading rate effect on ligaments properties would enable better case-specific human modelling.

Emotional state talk and emotion understanding: a training study with preschool children.

PubMed

Gavazzi, Ilaria Grazzani; Ornaghi, Veronica

2011-11-01

ABSTRACTThe present study investigates whether training preschool children in the active use of emotional state talk plays a significant role in bringing about greater understanding of emotion terms and improved emotion comprehension. Participants were 100 preschool children (M=52 months; SD=9·9; range: 35-70 months), randomly assigned to experimental or control conditions. They were pre- and post-tested to assess their language comprehension, metacognitive language comprehension and emotion understanding. Analyses of pre-test data did not show any significant differences between experimental and control groups. During the intervention phase, the children were read stories enriched with emotional lexicon. After listening to the stories, children in the experimental group took part in conversational language games designed to stimulate use of the selected emotional terms. In contrast, the control group children did not take part in any special linguistic activities after the story readings. Analyses revealed that the experimental group outperformed the control group in the understanding of inner state language and in the comprehension of emotion.

THE STUDY AND TREATMENT OF MOTHERS AND INFANTS, THEN AND NOW: MELANIE KLEIN'S "NOTES ON BABY" IN A CONTEMPORARY PSYCHOANALYTIC CONTEXT.

PubMed

Aguayo, Joseph; Salomonsson, Björn

2017-04-01

This paper draws on Melanie Klein's (unpublished) observational notes of her infant grandson, written primarily in 1938 and 1939. Apart from moving glimpses into a young family's life, the notes contain astute observations of an infant's behavior and emotions. Compared with Klein's published writings, the style is less theoretical and polemical. Later, in his latency years, Klein's grandson was in analysis with Marion Milner, who in 1952 published a paper drawing on the treatment. The present paper focuses on (1) how observations and treatment of the same child and his family by clinicians in close relationships with each other (Klein, Milner, and Winnicott) fertilized reciprocal influence but also brought into question the validity of Klein's observations, and (2) the relative merits and contributions of various modalities in understanding the infant's psyche, including experimental research, direct observation, parent-infant psychotherapy, and reconstructions from older patients-as occurs, for example, in psychoanalysis. © 2017 The Psychoanalytic Quarterly, Inc.

Improving Low-Income Preschoolers’ Theory of Mind: A Training Study

PubMed Central

Tompkins, Virginia

2015-01-01

This study examined the efficacy of training theory of mind via storybook interactions focused on characters' mental states (i.e., beliefs and emotions) in a sample of 73 low-income preschoolers, and determined if training transferred to social competence. Children in the experimental group participated in experimenter-led book interactions in which characters' false beliefs and emotions were discussed. Children in the first control group were read the same stories, but without the embedded discussions; children in the second control group were not read books. Children's false belief understanding, emotion understanding, and social competence were assessed at pretest, an immediate posttest, and a delayed posttest two months later. Children in the experimental group outperformed both controls on false belief understanding, but not emotion understanding or social competence, at both posttests. PMID:26294810

Multiscale Behavior of Viscous Fluids Dynamics: Experimental Observations

NASA Astrophysics Data System (ADS)

Arciniega-Ceballos, Alejandra; Spina, Laura; Scheu, Bettina; Dingwell, Donald B.

2016-04-01

The dynamics of Newtonian fluids with viscosities of mafic to intermediate silicate melts (10-1000 Pa s) during slow decompression present multi-time scale processes. To observe these processes we have performed several experiments on silicon oil saturated with Argon gas for 72 hours, in a Plexiglas autoclave. The slow decompression, dropping from 10 MPa to ambient pressure, acting as the excitation mechanism, triggered several processes with their own distinct timescales. These processes generate complex non-stationary microseismic signals, which have been recorded with 7 high-dynamic piezoelectric sensors located along the conduit flanked by high-speed video recordings. The analysis in time and frequency of these time series and their correlation with the associated high-speed imaging enables the characterization of distinct phases and the extraction of the individual processes during the evolution of decompression of these viscous fluids. We have observed fluid-solid elastic interaction, degassing, fluid mass expansion and flow, bubble nucleation, growth, coalescence and collapse, foam building and vertical wagging. All these processes (in fine and coarse scales) are sequentially coupled in time, occur within specific pressure intervals, and exhibit a localized distribution along the conduit. Their coexistence and interactions constitute the stress field and driving forces that determine the dynamics of the conduit system. Our observations point to the great potential of this experimental approach in the understanding of volcanic conduit dynamics and volcanic seismicity.

Numerical simulation of dendrite growth in nickel-based superalloy and validated by in-situ observation using high temperature confocal laser scanning microscopy

NASA Astrophysics Data System (ADS)

Yan, Xuewei; Xu, Qingyan; Liu, Baicheng

2017-12-01

Dendritic structures are the predominant microstructural constituents of nickel-based superalloys, an understanding of the dendrite growth is required in order to obtain the desirable microstructure and improve the performance of castings. For this reason, numerical simulation method and an in-situ observation technology by employing high temperature confocal laser scanning microscopy (HT-CLSM) were used to investigate dendrite growth during solidification process. A combined cellular automaton-finite difference (CA-FD) model allowing for the prediction of dendrite growth of binary alloys was developed. The algorithm of cells capture was modified, and a deterministic cellular automaton (DCA) model was proposed to describe neighborhood tracking. The dendrite and detail morphology, especially hundreds of dendrites distribution at a large scale and three-dimensional (3-D) polycrystalline growth, were successfully simulated based on this model. The dendritic morphologies of samples before and after HT-CLSM were both observed by optical microscope (OM) and scanning electron microscope (SEM). The experimental observations presented a reasonable agreement with the simulation results. It was also found that primary or secondary dendrite arm spacing, and segregation pattern were significantly influenced by dendrite growth. Furthermore, the directional solidification (DS) dendritic evolution behavior and detail morphology were also simulated based on the proposed model, and the simulation results also agree well with experimental results.

Inverse Slip Accompanying Twinning and Detwinning during Cyclic Loading of Magnesium Single Crystal

DOE PAGES

Yu, Qin; Wang, Jian; Jiang, Yanyao

2013-01-01

In situ , observation of twinning and detwinning in magnesium single crystals during tension-compression cyclic loading was made using optical microscopy. A quantitative analysis of plastic strain indicates that twinning and detwinning experience two stages, low and high work hardening de-twinning, and pure re-twinning and fresh twinning combined with retwinning. Slip is always activated. For the first time, inverse slip accompanying with pure retwinning and high work hardening detwinning was experimentally identified, which provides insights in better understanding of the activity of twining, detwinning, and slips.

Actin-based motility of Listeria: Right-handed helical trajectories

NASA Astrophysics Data System (ADS)

Rangarajan, Murali

2012-06-01

Bacteria such as Listeria monocytogenes recruit cellular machinery to move in and between cells. Understanding the mechanism of motility, including force and torque generation and the resultant displacements, holds keys to numerous applications in medicine and biosensing. In this work, a simple back-of-the-envelope calculation is presented to illustrate that a biomechanical model of actin-based motility of a rigid surface through persistently attached filaments propelled by affinity-modulated molecular motors can produce a right-handed helical trajectory consistent with experimental observations. The implications of the mechanism to bacterial motility are discussed.

Stochastic nonlinear electrical characteristics of graphene

NASA Astrophysics Data System (ADS)

Jun Shin, Young; Gopinadhan, Kalon; Narayanapillai, Kulothungasagaran; Kalitsov, Alan; Bhatia, Charanjit S.; Yang, Hyunsoo

2013-01-01

A stochastic nonlinear electrical characteristic of graphene is reported. Abrupt current changes are observed from voltage sweeps between the source and drain with an on/off ratio up to 103. It is found that graphene channel experiences the topological change. Active radicals in an uneven graphene channel cause local changes of electrostatic potential. Simulation results based on the self-trapped electron and hole mechanism account well for the experimental data. Our findings illustrate an important issue of reliable electron transports and help for the understanding of transport properties in graphene devices.

Relativistic effects in photoionization: Wigner time delay for the noble gases and IIB atoms

NASA Astrophysics Data System (ADS)

Banerjee, Sourav; Deshmukh, Pranawa; Dolmatov, Valeriy; Kheifets, Anatoli; Manson, Steven

2017-04-01

Time delay in atomic photoionization has been observed in several experiments, and various theoretical and experimental approaches are developing rapidly to obtain a better understanding of this phenomena. Theoretical methods that account for many body correlations include the relativistic random phase approximation (RRPA) and its non-relativistic analogue, RPAE. Calculations using RRPA are performed and the impact of relativistic interactions on Wigner time delay are explored via comparison of this result with RPAE results. In addition, results on Wigner time delay for Zn Cd and Hg are presented.

Investigation on the adsorption characteristics of anserine on the surface of colloidal silver nanoparticles.

PubMed

Thomas, S; Maiti, N; Mukherjee, T; Kapoor, S

2013-08-01

The surface-enhanced Raman scattering (SERS) studies of anserine (beta-alanyl-N-methylhistidine) was carried out on colloidal silver nanoparticles to understand its adsorption characteristics. The experimentally observed Raman bands were assigned based on the results of DFT calculations. The studies suggest that the interaction of anserine is primarily through the carboxylate group with the imidazole ring in an upright position with respect to the silver surface. Concentration dependent SERS studies suggest a change in orientation at sub-monolayer concentration. Copyright © 2013 Elsevier B.V. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hansen, Frank; Popp, Till; Wieczorek, Klaus

The purposes of this paper are to review the vast amount of knowledge concerning crushed salt reconsolidation and its attendant hydraulic properties (i.e., its capability for fluid or gas transport) and to provide a sufficient basis to understand reconsolidation and healing rates under repository conditions. Topics covered include: deformation mechanisms and hydro-mechanical interactions during reconsolidation; the experimental data base pertaining to crushed salt reconsolidation; transport properties of consolidating granulated salt and provides quantitative substantiation of its evolution to characteristics emulating undisturbed rock salt; and extension of microscopic and laboratory observations and data to the applicable field scale.

Toward a structural understanding of turbulent drag reduction: nonlinear coherent states in viscoelastic shear flows.

PubMed

Stone, Philip A; Waleffe, Fabian; Graham, Michael D

2002-11-11

Nontrivial steady flows have recently been found that capture the main structures of the turbulent buffer layer. We study the effects of polymer addition on these "exact coherent states" (ECS) in plane Couette flow. Despite the simplicity of the ECS flows, these effects closely mirror those observed experimentally: Structures shift to larger length scales, wall-normal fluctuations are suppressed while streamwise ones are enhanced, and drag is reduced. The mechanism underlying these effects is elucidated. These results suggest that the ECS are closely related to buffer layer turbulence.

Plasticity of ductile metallic glasses: a self-organized critical state.

PubMed

Sun, B A; Yu, H B; Jiao, W; Bai, H Y; Zhao, D Q; Wang, W H

2010-07-16

We report a close correlation between the dynamic behavior of serrated flow and the plasticity in metallic glasses (MGs) and show that the plastic deformation of ductile MGs can evolve into a self-organized critical state characterized by the power-law distribution of shear avalanches. A stick-slip model considering the interaction of multiple shear bands is presented to reveal complex scale-free intermittent shear-band motions in ductile MGs and quantitatively reproduce the experimental observations. Our studies have implications for understanding the precise plastic deformation mechanism of MGs.

Atomistic insight into the adsorption site selectivity of stepped Au(111) surfaces

NASA Astrophysics Data System (ADS)

Gaspari, Roberto; Pignedoli, Carlo A.; Fasel, Roman; Treier, Matthias; Passerone, Daniele

2010-07-01

Using classical and ab initio simulations, we study the interplay between the Au(111) surface reconstruction and monoatomic steps on a vicinal face. The experimentally observed discommensuration line patterns on a specific vicinal are reproduced and explained, and a complete description of the structure is given. An unusual atomic arrangement is shown to be responsible for the lower reactivity of hcp segments of step edges compared to the one of fcc segments. Our results provide an unprecedented understanding of the electronic and geometric properties of the complex Au(111) surface.

Discovery of a meta-stable Al-Sm phase with unknown stoichiometry using a genetic algorithm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Feng; McBrearty, Ian; Ott, R. T.

Unknown crystalline phases observed during the devitrification process of glassy metal alloys significantly limit our ability to understand and control phase selection in these systems driven far from equilibrium. Here, we report a new meta-stable Al 5Sm phase identified by simultaneously searching Al-rich compositions of the Al–Sm system, using an efficient genetic algorithm. The excellent match between calculated and experimental X-ray diffraction patterns confirms that this new phase appeared in the crystallization of melt-spun Al 90Sm 10 alloys.

A one-dimensional stochastic approach to the study of cyclic voltammetry with adsorption effects

DOE Office of Scientific and Technical Information (OSTI.GOV)

Samin, Adib J.

In this study, a one-dimensional stochastic model based on the random walk approach is used to simulate cyclic voltammetry. The model takes into account mass transport, kinetics of the redox reactions, adsorption effects and changes in the morphology of the electrode. The model is shown to display the expected behavior. Furthermore, the model shows consistent qualitative agreement with a finite difference solution. This approach allows for an understanding of phenomena on a microscopic level and may be useful for analyzing qualitative features observed in experimentally recorded signals.

Theories of blood coagulation.

PubMed

Riddel, James P; Aouizerat, Bradley E; Miaskowski, Christine; Lillicrap, David P

2007-01-01

Although the concept of the coagulation cascade represented a significant advance in the understanding of coagulation and served for many years as a useful model, more recent clinical and experimental observations demonstrate that the cascade/waterfall hypothesis does not fully and completely reflect the events of hemostasis in vivo. The goal of this article is to review the evolution of the theories of coagulation and their proposed models to serve as a tool when reviewing the research and practice literature that was published in the context of these different theories over time.

A one-dimensional stochastic approach to the study of cyclic voltammetry with adsorption effects

NASA Astrophysics Data System (ADS)

Samin, Adib J.

2016-05-01

In this study, a one-dimensional stochastic model based on the random walk approach is used to simulate cyclic voltammetry. The model takes into account mass transport, kinetics of the redox reactions, adsorption effects and changes in the morphology of the electrode. The model is shown to display the expected behavior. Furthermore, the model shows consistent qualitative agreement with a finite difference solution. This approach allows for an understanding of phenomena on a microscopic level and may be useful for analyzing qualitative features observed in experimentally recorded signals.

The challenges of modelling antibody repertoire dynamics in HIV infection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, Shishi; Perelson, Alan S.

Antibody affinity maturation by somatic hypermutation of B-cell immunoglobulin variable region genes has been studied for decades in various model systems using well-defined antigens. While much is known about the molecular details of the process, our understanding of the selective forces that generate affinity maturation are less well developed, particularly in the case of a co-evolving pathogen such as HIV. Despite this gap in understanding, high-throughput antibody sequence data are increasingly being collected to investigate the evolutionary trajectories of antibody lineages in HIV-infected individuals. Here, we review what is known in controlled experimental systems about the mechanisms underlying antibody selectionmore » and compare this to the observed temporal patterns of antibody evolution in HIV infection. In addition, we describe how our current understanding of antibody selection mechanisms leaves questions about antibody dynamics in HIV infection unanswered. Without a mechanistic understanding of antibody selection in the context of a co-evolving viral population, modelling and analysis of antibody sequences in HIV-infected individuals will be limited in their interpretation and predictive ability.« less