Unearthing Secrets of the Forest

USGS Publications Warehouse

Beldin, Sarah I.; Perakis, Steven S.

2009-01-01

Forests are a defining feature for large areas of the Pacific northwestern United States from northern California to Alaska. Coniferous temperate rainforests in the western Cascade and coastal mountain ranges are appreciated for their aesthetic value and abundant natural resources. Few people recognize the riches beneath the forest floor; yet, soil is a key ecosystem component that makes each type of forest unique. Soils harbor immense biological diversity and control the release of water and nutrients that support life above ground. Understanding how carbon and nutrients cycle in forests, known as forest biogeochemistry, is crucial for evaluating forest productivity, composition, diversity, and change. At the U.S. Geological Survey (USGS) Forest and Rangeland Ecosystem Science Center, research in the Terrestrial Ecosystems Laboratory focuses on nutrient cycling in five themes: climate change, nutrition and sustainability, fire effects, restoration, and forest-stream linkages. This research is essential to understand the entire forest ecosystem and to use the best science available to make informed policy and management decisions.

Nutrient Limitation of Microbial Mediated Decomposition and Arctic Soil Chronology

NASA Astrophysics Data System (ADS)

Melle, C. J.; Darrouzet-Nardi, A.; Wallenstein, M. D.

2012-12-01

Soils of northern permafrost regions currently contain twice as much carbon as the entire Earth's atmosphere. Traditionally, environmental constraints have limited microbial activity resulting in restricted decomposition of soil organic matter in these systems and accumulation of massive amounts of soil organic carbon (SOC), however climate change is reducing the constraints of decomposition in arctic permafrost regions. Carbon cycling in nutrient poor, arctic ecosystems is tightly coupled to other biogeochemical cycles. Several studies have suggested strong nitrogen limitations of primary productivity and potentially warm-season microbial activity in these nutrient deficient soils. Nitrogen is required for microbial extracellular enzyme production which drives the decomposition of soil organic matter (SOM). Nitrogen limited arctic soils may also experience limitation via labile carbon availability despite the SOM rich environment due to low extracellular enzyme production. Few studies have directly addressed nutrient induced microbial limitation in SOC rich arctic tundra soils, and even less is known about the potential for nutrient co-limitation. Additionally, through the process of becoming deglaciated, sites within close proximity to one another may have experienced drastic differences in their effective soil ages due to the varied length of their active histories. Many soil properties and nutrient deficiencies are directly related to soil age, however this chronology has not previously been a focus of research on nutrient limitation of arctic soil microbial activity. Understanding of nutrient limitations, as well as potential co-limitation, on arctic soil microbial activity has important implications for carbon cycling and the ultimate fate of the current arctic SOC reservoir. Analyses of nutrient limitation on soils of a single site are not adequate for fully understanding the controls on soil microbial activity across a vast land mass with large variation in effective soil age. My research is focused on addressing the questions of the extent of microbial N limitation in arctic tundra soils, the potential for co-limitation of labile C despite a high SOC environment, and the dependence, if any, nutrient limitation may have on the effective age of the soil. I have addressed these questions by conducting a laboratory soil incubation of factorial design with treatments of amended glucose, amended ammonium nitrate, and a control consisting of an addition of an equivalent volume of deionized water. Moist acid tundra soils possessing similar soil properties from two arctic sites of close proximity yet with varying deglaciation chronologies were utilized in my study. Soil properties of C-mineralization via respiration, microbial biomass, and nitrogen content in the forms of ammonium, nitrate, and total free amino acids and microbial extra-cellular enzyme production were assayed to determine the microbial response to the experimental treatments. Through the results of this work, I hope to better our understanding of biogeochemical cycling within arctic tundra ecosystems and the response to climate change by contributing to existing knowledge of nutrient limitation on microbial mediated decomposition of SOC in the arctic and how this may differ in soils of varying effective age.

Source and Cycling of Trace Metals and Nutrients in a Microbial Coalbed Methane System

NASA Astrophysics Data System (ADS)

Earll, M. M.; Barnhart, E. P.; Ritter, D.; Vinson, D. S.; Orem, W. H.; Vengosh, A.; McIntosh, J. C.

2015-12-01

The source and cycling of trace metals and nutrients in coalbed methane (CBM) systems are controlled by both geochemical processes, such as dissolution or precipitation, and biological mediation by microbial communities. CBM production by the microbes is influenced by trace metals and macronutrients such as nitrogen (N) and phosphate (P). Previous studies have shown the importance of these nutrients to both enhance and inhibit methane production; however, it's not clear whether they are sourced from coal via in-situ biodegradation of organic matter or transported into the seams with groundwater recharge. To address this knowledge gap, trace metal and nutrient geochemistry and the organic content of solid coal and associated groundwater will be investigated across a hydrologic gradient in CBM wells in the Powder River Basin, MT. Sequential dissolution experiments (chemical extraction of organic and inorganic constituents) using 8 core samples of coal and sandstone will provide insight into the presence of trace metals and nutrients in coalbeds, the associated minerals present, and their mobilization. If significant concentrations of N, P, and trace metals are present in core samples, in-situ sourcing of nutrients by microbes is highly probable. The biogeochemical evolution of groundwater, as it relates to trace metal and nutrient cycling by microbial consortia, will be investigated by targeting core-associated coal seams from shallow wells in recharge areas to depths of at least 165 m and across a 28 m vertical profile that include overburden, coal, and underburden. If microbial-limiting trace metals and nutrients are transported into coal seams with groundwater recharge, we would expect to see higher concentrations of trace metals and nutrients in recharge areas compared to deeper coalbeds. The results of this study will provide novel understanding of where trace metals and nutrients are sourced and how they are cycled in CBM systems.

Scaling Dissolved Nutrient Removal in River Networks: A Comparative Modeling Investigation

NASA Astrophysics Data System (ADS)

Ye, Sheng; Reisinger, Alexander J.; Tank, Jennifer L.; Baker, Michelle A.; Hall, Robert O.; Rosi, Emma J.; Sivapalan, Murugesu

2017-11-01

Along the river network, water, sediment, and nutrients are transported, cycled, and altered by coupled hydrological and biogeochemical processes. Our current understanding of the rates and processes controlling the cycling and removal of dissolved inorganic nutrients in river networks is limited due to a lack of empirical measurements in large, (nonwadeable), rivers. The goal of this paper was to develop a coupled hydrological and biogeochemical process model to simulate nutrient uptake at the network scale during summer base flow conditions. The model was parameterized with literature values from headwater streams, and empirical measurements made in 15 rivers with varying hydrological, biological, and topographic characteristics, to simulate nutrient uptake at the network scale. We applied the coupled model to 15 catchments describing patterns in uptake for three different solutes to determine the role of rivers in network-scale nutrient cycling. Model simulation results, constrained by empirical data, suggested that rivers contributed proportionally more to nutrient removal than headwater streams given the fraction of their length represented in a network. In addition, variability of nutrient removal patterns among catchments was varied among solutes, and as expected, was influenced by nutrient concentration and discharge. Net ammonium uptake was not significantly correlated with any environmental descriptor. In contrast, net daily nitrate removal was linked to suspended chlorophyll a (an indicator of primary producers) and land use characteristics. Finally, suspended sediment characteristics and agricultural land use were correlated with net daily removal of soluble reactive phosphorus, likely reflecting abiotic sorption dynamics. Rivers are understudied relative to streams, and our model suggests that rivers can contribute more to network-scale nutrient removal than would be expected based upon their representative fraction of network channel length.

Canopy Nutrient Cycling In Afromontane Tropical Forests At Different Successional Stages

NASA Astrophysics Data System (ADS)

Nyirambangutse, B.; Zibera, E.; Dusenge, M. E.; Nsabimana, D.; Pleijel, H.; Uddling, J.; Wallin, G.

2017-12-01

Canopy nutrient composition and cycling control biogeochemical processes and tree growth in forests. However, the understanding of nutrient limitations and cycling in tropical montane forests (TMF) is currently limited, in particular for Afromontane forests. In this study we investigated leaf nutrient composition and resorption, canopy nutrient cycling and soil carbon and nutrient content in 15 permanent plots at different successional stages in a TMF (elevation 1950 to 2550 m a.s.l.) in Rwanda, Central Africa. Leaf concentrations of 12 elements were analyzed in attached green leaves as well as in shed leaves of 10 early (ES) and 10 late (LS) successional tree species. Leaf nutrient concentrations mostly did not differ between ES and LS species (exception: K was 20% higher in ES), but the ratios of P, K and Mg to N were significantly higher in ES species. Mean resorption efficiencies of N (37%), P (48%) and K (46%) were much higher than for other nutrients. Nutrient resorption efficiency exhibited very large interspecific variation, did not differ between ES and LS species, and was not related to the leaf concentration of the respective element. Total leaf litterfall was on average 4.9 t ha-1 yr-1 (66% of total litterfall) and was independent of the successional stage of the forest. The total content of C, N, P and K in leaf litterfall did not differ between ES and LS stands. Ground litter turnover rates of C and N were 0.98 and 0.78 y-1, respectively. High leaf N concentrations, intermediate N:P ratios and low resorption efficiencies compared to values reported for other TMFs indicate high fertility and likely co-limitation by N and P, however progressively increasing towards P limitation during the course of succession. Our results further demonstrate that resorption efficiency and canopy litterfall inputs to soil mostly do not differ between ES and LS species in Afromontane tropical forests.

Global patterns of foliar nitrogen isotopes and their relationships with climate, mycorrhizal fungi, foliar nutrient concentrations, and nitrogen availability

Treesearch

Joseph M. Craine; Andrew J. Elmore; Marcos P. M. Aidar; Mercedes Bustamante; Todd E. Dawson; Erik A. Hobbie; Ansgar Kahmen; Michelle C. Mack; Kendra K. McLauchlan; Anders Michelsen; Gabriela Nardoto; Linda H. Pardo; Josep Penuelas; Peter B. Reich; Edward A.G. Schuur; William D. Stock; Pamela H. Templer; Ross A. Virginia; Jeffrey M. Welker; Ian J. Wright

2009-01-01

Ratios of nitrogen (N) isotopes in leaves could elucidate underlying patterns of N cycling across ecological gradients. To better understand global-scale patterns of N cycling, we compiled data on foliar N isotope ratios, foliar N concentrations, mycorrhizal type and climate for over 11 000 plants worldwide. Global-scale comparisons of other components of the N cycle...

Using Ants to Investigate the Environment

ERIC Educational Resources Information Center

Hagevik, Rita A.

2005-01-01

The best place for students to begin to understand complex environmental relationships is in their own back yards. Doing investigations of ants allows students to establish a baseline survey of ant fauna, test the importance of ants in nutrient cycling and soil structure maintenance, and increase their understanding of the environment and their…

Effects of Successive Harvests on Soil Nutrient Stocks in Established Tropical Plantation Forests

NASA Astrophysics Data System (ADS)

Mendoza, L.; McMahon, D.; Jackson, R. B.

2017-12-01

Large-scale plantation forests in tropical regions alter biogeochemical processes, raising concerns about the long-term sustainability of this land use. Current commercial practices result in nutrient export with removed biomass that may not be balanced by fertilizer application. Consequent changes in a landscape's nutrient distributions can affect the growth of future plantations or other vegetation. Prior studies have reported changes in soil chemical and physical properties when plantation forests replace pastures or native vegetation, but few have examined the impacts of multiple harvest cycles following plantation establishment. This study analyzed macronutrient and carbon content of soil samples from the world's most productive plantation forests, in southeastern Brazil, to understand the long-term effects of plantation forests on soil nutrient stocks and soil fertility. Soil was collected from Eucalyptus plantation sites and adjacent vegetation in 2004 and again in 2016, after at least one full cycle of harvesting and replanting. We found that within surface soil (0-10 cm) Mg and N did not change significantly and C, P, K and Ca concentrations generally increased, but to varying extents within individual management units. This trend of increasing nutrient concentrations suggests that additional harvests do not result in cumulative nutrient depletion. However, large changes in Ca and K concentrations in individual plantation units indicate that added fertilizer does not consistently accumulate in the surface soil. Analysis of deeper soil layers and comparison to unfertilized vegetation will help to determine the fate of fertilizers and native soil nutrients in repeatedly harvested plantations. These results address the necessity of long-term investigation of nutrient changes to better understand and determine the impacts of different types of land use in the tropics.

Rangeland health assessment - The key to understanding and assessing rangeland soil health in the Northern Great Plains

USDA-ARS?s Scientific Manuscript database

As the science related to soil and rangeland health evolves, so do their protocols and assessment methodologies. Rangeland health assessments consist of evaluating how well ecological processes such as the water cycle, energy flow and nutrient cycling are functioning at a site. Soil health is the ca...

Advances in the understanding of nutrient dynamics and management in UK agriculture.

PubMed

Dungait, Jennifer A J; Cardenas, Laura M; Blackwell, Martin S A; Wu, Lianhai; Withers, Paul J A; Chadwick, David R; Bol, Roland; Murray, Philip J; Macdonald, Andrew J; Whitmore, Andrew P; Goulding, Keith W T

2012-09-15

Current research on macronutrient cycling in UK agricultural systems aims to optimise soil and nutrient management for improved agricultural production and minimise effects on the environment and provision of ecosystem services. Nutrient use inefficiencies can cause environmental pollution through the release of greenhouse gases into the atmosphere and of soluble and particulate forms of N, P and carbon (C) in leachate and run-off into watercourses. Improving nutrient use efficiencies in agriculture calls for the development of sustainable nutrient management strategies: more efficient use of mineral fertilisers, increased recovery and recycling of waste nutrients, and, better exploitation of the substantial inorganic and organic reserves of nutrients in the soil. Long-term field experimentation in the UK has provided key knowledge of the main nutrient transformations in agricultural soils. Emerging analytical technologies, especially stable isotope labelling, that better characterise macronutrient forms and bioavailability and improve the quantification of the complex relationships between the macronutrients in soils at the molecular scale, are augmenting this knowledge by revealing the underlying processes. The challenge for the future is to determine the relationships between the dynamics of N, P and C across scales, which will require both new modelling approaches and integrated approaches to macronutrient cycling. Copyright © 2012 Elsevier B.V. All rights reserved.

Increased plant growth from nitrogen addition should conserve phosphorus in terrestrial ecosystems.

PubMed

Perring, Michael P; Hedin, Lars O; Levin, Simon A; McGroddy, Megan; de Mazancourt, Claire

2008-02-12

Inputs of available nitrogen (N) to ecosystems have grown over the recent past. There is limited general understanding of how increased N inputs affect the cycling and retention of other potentially limiting nutrients. Using a plant-soil nutrient model, and by explicitly coupling N and phosphorus (P) in plant biomass, we examine the impact of increasing N supply on the ecosystem cycling and retention of P, assuming that the main impact of N is to increase plant growth. We find divergent responses in the P cycle depending on the specific pathway by which nutrients are lost from the ecosystem. Retention of P is promoted if the relative propensity for loss of plant available P is greater than that for the loss of less readily available organic P. This is the first theoretical demonstration that the coupled response of ecosystem-scale nutrient cycles critically depends on the form of nutrient loss. P retention might be lessened, or reversed, depending on the kinetics and size of a buffering reactive P pool. These properties determine the reactive pool's ability to supply available P. Parameterization of the model across a range of forest ecosystems spanning various environmental and climatic conditions indicates that enhanced plant growth due to increased N should trigger increased P conservation within ecosystems while leading to more dissolved organic P loss. We discuss how the magnitude and direction of the effect of N may also depend on other processes.

Nutrient stoichiometry of temperate trees and effects on the coupled cycles of carbon, nitrogen, and cations in soil

NASA Astrophysics Data System (ADS)

Mueller, K. E.; Oleksyn, J.; Hobbie, S. E.; Reich, P.; Chorover, J. D.; Freeman, K. H.; Eissenstat, D.

2009-12-01

Nutrient stoichiometry of leaf litter (LL) is a potentially important driver of plant effects on soil biogeochemistry; it is also responsive to environmental perturbations and differs among plant functional groups that may have predictable responses to the environment. Thus variation in LL nutrient stoichiometry may provide a predictive framework for the influence of global change on soil. However, this approach depends on several key, but poorly tested assumptions, including: 1) other plant organs follow similar patterns and have similar effects on soil biogeochemistry, and 2) patterns in leaf traits, functional group dominance, and soil properties across large-spatial scales are predictive at smaller scales. To address these assumptions and test the utility of nutrient stoichiometry as a predictive framework for soil change, we synthesize data on tree stoichiometry and soil biogeochemistry from a long-term (> 30 yr) common garden experiment containing replicated, monoculture plots of 14 temperate tree species. LL nutrient stoichiometry alone is insufficient to explain differences in biogeochemical cycling among tree species, in part due to the dissimilarity of leaf and root traits within species. Notably, different elements and plant organs have independent impacts on soil biogeochemistry. LL nitrogen (N) concentration and lignin:N ratios have small or negligible effects on soil carbon (C), N, and cation cycling, while LL-calcium (Ca) drives differences in litter decomposition and soil pH among species in a manner consistent with nutrient requirements of anecic earthworms. However, LL-Ca effects on C and N cycles in soil appear minor compared to the influences of root N and, unexpectedly, green leaf N, which combine to drive differences in soil N dynamics via unique mechanisms consistent with nutrient requirements of soil microbes and the trees. In turn, soil N dynamics are strongly correlated with soil acidity and C stabilization. By taking into account the stoichiometry of each plant organ, of soil microbes and fauna, and the interactions among C, N, and cation cycles, the predictive capacity of tree nutrient stoichiometry for understanding soil change is apparent, albeit complex.

Nitrogen and Oxygen Isotopic Studies of the Marine Nitrogen Cycle

NASA Astrophysics Data System (ADS)

Casciotti, Karen L.

2016-01-01

The marine nitrogen cycle is a complex web of microbially mediated reactions that control the inventory, distribution, and speciation of nitrogen in the marine environment. Because nitrogen is a major nutrient that is required by all life, its availability can control biological productivity and ecosystem structure in both surface and deep-ocean communities. Stable isotopes of nitrogen and oxygen in nitrate and nitrite have provided new insights into the rates and distributions of marine nitrogen cycle processes, especially when analyzed in combination with numerical simulations of ocean circulation and biogeochemistry. This review highlights the insights gained from dual-isotope studies applied at regional to global scales and their incorporation into oceanic biogeochemical models. These studies represent significant new advances in the use of isotopic measurements to understand the modern nitrogen cycle, with implications for the study of past ocean productivity, oxygenation, and nutrient status.

Representation of deforestation impacts on climate, water, and nutrient cycles in the ACME earth system model

NASA Astrophysics Data System (ADS)

Cai, X.; Riley, W. J.; Zhu, Q.

2017-12-01

Deforestation causes a series of changes to the climate, water, and nutrient cycles. Employing a state-of-the-art earth system model—ACME (Accelerated Climate Modeling for Energy), we comprehensively investigate the impacts of deforestation on these processes. We first assess the performance of the ACME Land Model (ALM) in simulating runoff, evapotranspiration, albedo, and plant productivity at 42 FLUXNET sites. The single column mode of ACME is then used to examine climate effects (temperature cooling/warming) and responses of runoff, evapotranspiration, and nutrient fluxes to deforestation. This approach separates local effects of deforestation from global circulation effects. To better understand the deforestation effects in a global context, we use the coupled (atmosphere, land, and slab ocean) mode of ACME to demonstrate the impacts of deforestation on global climate, water, and nutrient fluxes. Preliminary results showed that the land component of ACME has advantages in simulating these processes and that local deforestation has potentially large impacts on runoff and atmospheric processes.

Linking environmental nutrient enrichment and disease emergence in humans and wildlife

PubMed Central

Johnson, Pieter T. J.; Townsend, Alan R.; Cleveland, Cory C.; Glibert, Patricia M.; Howarth, Robert W.; McKenzie, Valerie J.; Rejmankova, Eliska; Ward, Mary H.

2009-01-01

Worldwide increases in the numbers of human and wildlife diseases present ecologists with the challenge of understanding how large-scale environmental changes affect host-parasite interactions. One of the most profound changes to Earth’s ecosystems is the alteration of global nutrient cycles, including those of phosphorus (P) and especially nitrogen (N). Alongside the obvious direct benefits of nutrient application for food production, growing evidence suggests that anthropogenic inputs of N and P can indirectly affect the abundance of infectious and noninfectious pathogens, sometimes leading to epidemic conditions. However, the mechanisms underpinning observed correlations, and how such patterns vary with disease type, have long remained conjectural. Here, we discuss recent experimental advances in this area to critically evaluate the relationship between environmental nutrient enrichment and disease. Given the inter-related nature of human and wildlife disease emergence, we include a broad range of human and wildlife examples from terrestrial, marine and freshwater ecosystems. We examine the consequences of nutrient pollution on directly transmitted, vector-borne, complex life cycle, and noninfectious pathogens, including West Nile virus, malaria, harmful algal blooms, coral reef diseases and amphibian malformations. Our synthetic examination suggests that the effects of environmental nutrient enrichment on disease are complex and multifaceted, varying with the type of pathogen, host species and condition, attributes of the ecosystem and the degree of enrichment; some pathogens increase in abundance whereas others decline or disappear. Nevertheless, available evidence indicates that ecological changes associated with nutrient enrichment often exacerbate infection and disease caused by generalist parasites with direct or simple life cycles. Observed mechanisms include changes in host/vector density, host distribution, infection resistance, pathogen virulence or toxicity, or the direct supplementation of pathogens. Collectively, these pathogens may be particularly dangerous because they can continue to cause mortality even as their hosts decline, potentially leading to sustained epidemics or chronic pathology. We suggest that interactions between nutrient enrichment and disease will become increasingly important in tropical and subtropical regions, where forecasted increases in nutrient application will occur in an environment rich with infectious pathogens. We emphasize the importance of careful disease management in conjunction with continued intensification of global nutrient cycles. PMID:20349828

Nutrients in estuaries--an overview and the potential impacts of climate change.

PubMed

Statham, Peter J

2012-09-15

The fate and cycling of macronutrients introduced into estuaries depend upon a range of interlinked processes. Hydrodynamics and morphology in combination with freshwater inflow control the freshwater flushing time, and the timescale for biogeochemical processes to operate that include microbial activity, particle-dissolved phase interactions, and benthic exchanges. In some systems atmospheric inputs and exchanges with coastal waters can also be important. Climate change will affect nutrient inputs and behaviour through modifications to temperature, wind patterns, the hydrological cycle, and sea level rise. Resulting impacts include: 1) inundation of freshwater systems 2) changes in stratification, flushing times and phytoplankton productivity 3) increased coastal storm activity 4) changes in species and ecosystem function. A combination of continuing high inputs of nutrients through human activity and climate change is anticipated to lead to enhanced eutrophication in the future. The most obvious impacts of increasing global temperature will be in sub-arctic systems where permafrost zones will be reduced in combination with enhanced inputs from glacial systems. Improved process understanding in several key areas including cycling of organic N and P, benthic exchanges, resuspension, impact of bio-irrigation, particle interactions, submarine groundwater discharges, and rates and magnitude of bacterially-driven recycling processes, is needed. Development of high frequency in situ nutrient analysis systems will provide data to improve predictive models that need to incorporate a wider variety of key factors, although the complexity of estuarine systems makes such modelling a challenge. However, overall a more holistic approach is needed to effectively understand, predict and manage the impact of macronutrients on estuaries. Copyright © 2011 Elsevier B.V. All rights reserved.

An integrated decision support system for wastewater nutrient recovery and recycling to agriculture

NASA Astrophysics Data System (ADS)

Roy, E. D.; Bomeisl, L.; Cornbrooks, P.; Mo, W.

2017-12-01

Nutrient recovery and recycling has become a key research topic within the wastewater engineering and nutrient management communities. Several technologies now exist that can effectively capture nutrients from wastewater, and innovation in this area continues to be an important research pursuit. However, practical nutrient recycling solutions require more than capable nutrient capture technologies. We also need to understand the role that wastewater nutrient recovery and recycling can play within broader nutrient management schemes at the landscape level, including important interactions at the nexus of food, energy, and water. We are developing an integrated decision support system that combines wastewater treatment data, agricultural data, spatial nutrient balance modeling, life cycle assessment, stakeholder knowledge, and multi-criteria decision making. Our goals are to: (1) help guide design decisions related to the implementation of sustainable nutrient recovery technology, (2) support innovations in watershed nutrient management that operate at the interface of the built environment and agriculture, and (3) aid efforts to protect aquatic ecosystems while supporting human welfare in a circular nutrient economy. These goals will be realized partly through the assessment of plausible alternative scenarios for the future. In this presentation, we will describe the tool and focus on nutrient balance results for the New England region. These results illustrate that both centralized and decentralized wastewater nutrient recovery schemes have potential to transform nutrient flows in many New England watersheds, diverting wastewater N and P away from aquatic ecosystems and toward local or regional agricultural soils where they can offset a substantial percentage of imported fertilizer. We will also highlight feasibility criteria and next steps to integrate stakeholder knowledge, economics, and life cycle assessment into the tool.

Effects of Gravel Bars on Nutrient Spiraling in Bedrock-Alluvium Streams

NASA Astrophysics Data System (ADS)

Iobst, B. R.; Carroll, E. P.; Furbish, D. J.

2007-05-01

The importance of the connection between nutrient transport and local stream geomorphology is becoming increasingly important. Studies have shown that the interconnectivity of nutrient cycles in the downstream direction is in part controlled by the distribution and size of gravel bars in low order streams, as hyporheic flow occurs dominantly through alternate and mid-channel gravel bars. For this investigation multiple gravel bars in a 3rd order bedrock-alluvium stream were studied to determine general relationships between nutrient spiraling and hyporheic flow. The first goal was to understand (1) the extent to which water moves through hyporheic zones and (2) the basic chemistry of the hyporheic water. The second part of the study was to understand how nutrients, notably nitrogen, are affected in their cycling by the relatively long residence times encountered in gravel bars during hyporheic flow. Wells were installed along a 600 m reach of Panther Creek, KY in selected bars, as well as in a secondary location involving a grid installation pattern in one large bar. Results have shown that hyporheic flow through gravel bars is an important factor in influencing stream chemistry. Background water chemistry surveys have shown that certain parameters, specifically ammonium and nitrogen concentrations vary downstream, and that the dominant control over these changes is gravel bar location. Rhodamine WT was used in field tracer tests to track the travel times of water through bars as well as partitioning of water between the open channel and hyporheic flows. Further tests will be conducted utilizing a stable isotope study to determine how nitrogen is affected by hyporheic flow, and what implications this has for nutrient transport. We expect results to show that the spacing and size of gravel bars is a dominant control in key nutrient spiraling parameters, namely uptake lengths and overall nitrogen cycling rates. This has implications for how natural systems will respond to human impacts, both through the modification of the physical template of stream systems as well as increased anthropogenic loading of nitrogen.

Dissolved Nutrient Removal in River Networks: When and Where

NASA Astrophysics Data System (ADS)

Ye, S.; Ran, Q.

2017-12-01

Along the river network, water, sediment, and nutrients are transported, cycled, and altered by coupled hydrological and biogeochemical processes. Due to increasing human activities such as urbanization, and fertilizer application associated with agricultural land use, nitrogen and phosphorus inputs to aquatic ecosystems have increased dramatically since the beginning of the 20th century. Meanwhile, our current understanding of the rates and processes controlling the cycling and removal of dissolved inorganic nutrients in river networks is still limited due to a lack of empirical measurements, especially in large rivers. Here, based on the simulation of a coupled hydrological and biogeochemical process model, we track the nutrient uptake at the network scale. The model was parameterized with literature values from headwater streams and empirical measurements made in 15 rivers with varying hydrological, biological, and topographic characteristics. We applied the coupled model to an agricultural catchment in the Midwest to estimate the residence time, reaction time and travel distance of the nutrient exported from different places across watershed. In this work, we explore how to use these temporal and spatial characteristics to quantify the nutrient removal across the river network. We then further investigate the impact of heterogeneous lateral input on network scale nutrient removal. Whether or not this would influence the overall nutrient removal in the watershed, if so, to what extent would this have significant impact?

Effects of repetitive droughts on carbon, nutrient and water cycles of heathland ecosystem

NASA Astrophysics Data System (ADS)

Rineau, Francois; Beenaerts, Natalie; Nijs, Ivan; De Boeck, Hans; Vangronsveld, Jaco

2017-04-01

A large body of research is now focusing on the understanding of mechanisms regulating ecosystem functioning, predictions on their activity in the long-term, and the management practices to keep them running. For this purpose, Hasselt University decided to invest in the construction of a high technological research infrastructure: the "Ecotron Hasselt University", where twelve large ecosystem replicates can be continuously monitored and controlled. The ecotrons will be fed with real-time climatic data from a nearby ICOS tower located on top of a heathland landscape. The research performed there will focus on understanding the response of heathland ecosystem services (ES) to yearly repeated droughts of different intensities. We aim to perform as well an economical valuation of these ES. From a biological point of view, we will measure soil processes that drive the three most valuable ES: water, C and nutrient cycles, and especially how soil organisms affect them, through which mechanisms and at different drought intensities. Species interactions and their influence on C sequestration and organic matter degradation will be also incorporated into a state-of-the art soil C cycling model.

Nutrient fluxes at the landscape level and the R* rule

USGS Publications Warehouse

Ju, Shu; DeAngelis, Donald L.

2010-01-01

Nutrient cycling in terrestrial ecosystems involves not only the vertical recycling of nutrients at specific locations in space, but also biologically driven horizontal fluxes between different areas of the landscape. This latter process can result in net accumulation of nutrients in some places and net losses in others. We examined the effects of such nutrient-concentrating fluxes on the R* rule, which predicts that the species that can survive in steady state at the lowest level of limiting resource, R*, can exclude all competing species. To study the R* rule in this context, we used a literature model of plant growth and nutrient cycling in which both nutrients and light may limit growth, with plants allocating carbon and nutrients between foliage and roots according to different strategies. We incorporated the assumption that biological processes may concentrate nutrients in some parts of the landscape. We assumed further that these processes draw nutrients from outside the zone of local recycling at a rate proportional to the local biomass density. Analysis showed that at sites where there is a sufficient biomass-dependent accumulation of nutrients, the plant species with the highest biomass production rates (roughly corresponding to the best competitors) do not reduce locally available nutrients to a minimum concentration level (that is, minimum R*), as expected from the R* rule, but instead maximize local nutrient concentration. These new results require broadening of our understanding of the relationships between nutrients and vegetation competition on the landscape level. The R* rule is replaced by a more complex criterion that varies across a landscape and reduces to the R* rule only under certain limiting conditions.

Uncertainty in the net hydrologic flux of calcium in a paired-watershed harvesting study

Treesearch

John Campbell; Ruth D. Yanai; Mark B. Green; Gene E. Likens; Craig R. See; Amey S. Bailey; Donald C. Buso; Daqing Yang

2016-01-01

Monitoring solutes in precipitation inputs and stream water exports at small watersheds has greatly advanced our understanding of biogeochemical cycling. Surprisingly, although inputs to and outputs from ecosystems are instrumental to understanding sources and sinks of nutrients and other elements, uncertainty in these fluxes is rarely reported in ecosystem budgets. We...

Combined use of stable isotopes and hydrologic modeling to better understand nutrient sources and cycling in highly altered systems (Invited)

NASA Astrophysics Data System (ADS)

Young, M. B.; Kendall, C.; Guerin, M.; Stringfellow, W. T.; Silva, S. R.; Harter, T.; Parker, A.

2013-12-01

The Sacramento and San Joaquin Rivers provide the majority of freshwater for the San Francisco Bay Delta. Both rivers are important sources of drinking and irrigation water for California, and play critical roles in the health of California fisheries. Understanding the factors controlling water quality and primary productivity in these rivers and the Delta is essential for making sound economic and environmental water management decisions. However, these highly altered surface water systems present many challenges for water quality monitoring studies due to factors such as multiple potential nutrient and contaminant inputs, dynamic source water inputs, and changing flow regimes controlled by both natural and engineered conditions. The watersheds for both rivers contain areas of intensive agriculture along with many other land uses, and the Sacramento River receives significant amounts of treated wastewater from the large population around the City of Sacramento. We have used a multi-isotope approach combined with mass balance and hydrodynamic modeling in order to better understand the dominant nutrient sources for each of these rivers, and to track nutrient sources and cycling within the complex Delta region around the confluence of the rivers. High nitrate concentrations within the San Joaquin River fuel summer algal blooms, contributing to low dissolved oxygen conditions. High δ15N-NO3 values combined with the high nitrate concentrations suggest that animal manure is a significant source of nitrate to the San Joaquin River. In contrast, the Sacramento River has lower nitrate concentrations but elevated ammonium concentrations from wastewater discharge. Downstream nitrification of the ammonium can be clearly traced using δ15N-NH4. Flow conditions for these rivers and the Delta have strong seasonal and inter-annual variations, resulting in significant changes in nutrient delivery and cycling. Isotopic measurements and estimates of source water contributions derived from the DSM2-HYDRO hydrologic model demonstrate that mixing between San Joaquin and Sacramento River water can occur as far as 30 miles upstream of the confluence within the San Joaquin channel, and that San Joaquin-derived nitrate only reaches the western Delta during periods of high flow.

Designing a high-frequency nutrient and biogeochemical monitoring network for the Sacramento–San Joaquin Delta, northern California

USGS Publications Warehouse

Bergamaschi, Brian A.; Downing, Bryan D.; Kraus, Tamara E.C.; Pellerin, Brian A.

2017-07-11

Executive SummaryThis report is the third in a series of three reports that provide information about how high-frequency (HF) nutrient monitoring may be used to assess nutrient inputs and dynamics in the Sacramento–San Joaquin Delta, California (Delta). The purpose of this report is to provide the background, principles, and considerations for designing an HF nutrient-monitoring network for the Delta to address high-priority, nutrient-management questions. The report starts with discussion of the high-priority management questions to be addressed, continues through discussion of the questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient-monitoring network designs for the Delta. For three example network designs, we assess how they would address high-priority questions that have been identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015).This report, along with the other two reports of this series (Kraus and others, 2017; Downing and others, 2017), was drafted in cooperation with the Delta Regional Monitoring Program to help scientists, managers, and planners understand how HF data improve our understanding of nutrient sources and sinks, drivers, and effects in the Delta. The first report in the series (Kraus and others, 2017) provides an introduction to the reasons for and fundamental concepts behind using HF monitoring measurements, including a brief summary of nutrient status and trends in the Delta and an extensive literature review showing how and where other research and monitoring programs have used HF monitoring to improve our understanding of nutrient cycling. The report covers the various technologies available for HF nutrient monitoring and presents the different ways HF monitoring instrumentation may be used for both fixed station and spatial assessments. Finally, it presents numerous examples of how HF measurements are currently (2017) being used in the Delta to examine how nutrients and nutrient cycling are related to aquatic habitat conditions.The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the north Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently (2017) operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales, such as within a few hours, but also significant variability at longer timescales such as months or years. This high variability affects calculation of fluxes and loads, indicating that HF monitoring is necessary for understanding and assessing flux-based processes and outcomes in Delta tidal environments.

Long-term fertilization, but not warming, shifts rates of ectomycorrhizal nutrient cycling in Arctic tussock tundra.

NASA Astrophysics Data System (ADS)

Dunleavy, H.; Mack, M. C.

2017-12-01

The role of ectomycorrhizae (ECM) in Arctic nutrient cycling may be changing as temperature, nutrient availability, and ECM shrub abundance and size increase. A shift in ECM function has been proposed as a possible mechanism for shrub expansion. While several studies demonstrate a higher abundance of ECM as well as community compositional shifts in response to long-term experimental warming and fertilization, direct measurements of functional responses are missing. To understand the potential role of ECM in soil biogeochemical processes of the changing Arctic, we investigated the functional response of ECM to 30 years of summer warming and increased nutrient availability by measuring potential activities of extracellular enzymes associated with nitrogen (N) and phosphorous (P) acquisition on ECM root tips. We hypothesize ECM enzyme activities will be higher with warmer temperatures. Conversely, fertilization will lower ECM enzyme activities as N and P become less limiting to host plants. Preliminary results strongly support our latter hypothesis, but not the first. Warming decreased hydrolytic P-associated and labile N-associated enzyme activities on individual root tips (pmol/min/mm2 root tip) by 30% and 83%, respectively. However, warming increased ECM abundance and did not alter community-level activities (pmol/min/cm3 soil). Fertilization decreased hydrolytic and oxidative enzymatic activities on individual root tips by 34 to 80% as well as on a community level by 67 to 93%, even though ECM shrubs were almost monodominant. The combined effect of warming and fertilization decreased labile N-associated enzyme activity by 82%, but had little effect on oxidative and other hydrolytic enzyme activities. Although both warming and fertilization decreased root tip activities, reflecting a potential reduction in plant allocation to mycorrhizal nutrient acquisition, only fertilization lowered rates of ECM nutrient cycling. The indirect relationship between ECM abundance and individual root tip activity highlights the importance of measuring ECM function to assess the role of this symbiosis in nutrient cycling.

Biogeochemical cycling of permeable sediments in a shelf sea environment: Celtic Sea, a seasonal study.

NASA Astrophysics Data System (ADS)

Reynolds, S.; Klar, J. K.; Kitidis, V. A.; Chapman-Greig, L.; Panton, A.; Thompson, C.; Statham, P. J.; Fones, G. R.

2016-02-01

Shelf seas are globally important in contributing to the biogeochemical cycling of carbon and nutrients. Much of the benthic environment found in shelf seas comprise of relic permeable sands whereby advective pore-water flow processes govern the biogeochemical cycling within these sediments. To further elucidate our understanding of the biogeochemistry of these systems, flow-through reactors were employed during a field campaign as part of the UK led Shelf Sea Biogeochemistry Programme. Three cruises took place in the southern Celtic Sea in 2015 and were timed to sample pre-bloom, post-bloom and late summer conditions. Preliminary data show marked differences with the pre-bloom and late summer flow-through incubations when compared with the post-bloom. Pre-bloom and late summer oxygen consumption rates ranged between 0.18 mmol O2 m-3 d-1 and 0.15 mmol O2 m-3 d-1 respectively. However, post-bloom oxygen consumption rates were almost double at 0.29 mmol O2 m-3 d-1. Differences were also observed in the amount of iron (II) being released with no marked releases from the pre-bloom and late summer but with significant contributions of up to 140 nM during the post-bloom incubation. These initial findings demonstrate the seasonal variability and extent of the biogeochemical cycling of benthic permeable sediments. Additional measurements of inorganic nutrients, dissolved organic carbon and denitrification rates will contribute further to our understanding of sandy sediments in a shelf sea environment and their capacity to act as a carbon and nutrient source or sink.

Parasites and Their Impact on Ecosystem Nutrient Cycling.

PubMed

Vannatta, J Trevor; Minchella, Dennis J

2018-06-01

Consumer species alter nutrient cycling through nutrient transformation, transfer, and bioturbation. Parasites have rarely been considered in this framework despite their ability to indirectly alter the cycling of nutrients via their hosts. A simple mathematical framework can be used to assess the relative importance of parasite-derived nutrients in an ecosystem. Copyright © 2018 Elsevier Ltd. All rights reserved.

Unexpected dominance of parent-material strontium in a tropical forest on highly weathered soils

USGS Publications Warehouse

Bern, C.R.; Townsend, A.R.; Farmer, G.L.

2005-01-01

Controls over nutrient supply are key to understanding the structure and functioning of terrestrial ecosystems. Conceptual models once held that in situ mineral weathering was the primary long-term control over the availability of many plant nutrients, including the base cations calcium (Ca), magnesium (Mg), and potassium (K). Recent evidence has shown that atmospheric sources of these "rock-derived" nutrients can dominate actively cycling ecosystem pools, especially in systems on highly weathered soils. Such studies have relied heavily on the use of strontium isotopes as a proxy for base-cation cycling. Here we show that vegetation and soil-exchangeable pools of strontium in a tropical rainforest on highly weathered soils are still dominated by local rock sources. This pattern exists despite substantial atmospheric inputs of Sr, Ca, K, and Mg, and despite nearly 100% depletion of these elements from the top 1 m of soil. We present a model demonstrating that modest weathering inputs, resulting from tectonically driven erosion, could maintain parent-material dominance of actively cycling Sr. The majority of tropical forests are on highly weathered soils, but our results suggest that these forests may still show considerable variation in their primary sources of essential nutrients. ?? 2005 by the Ecological Society of America.

Macronutrient and carbon supply, uptake and cycling across the Antarctic Peninsula shelf during summer

PubMed Central

Jones, Elizabeth M.; Venables, Hugh J.; Firing, Yvonne L.; Dittrich, Ribanna; Heiser, Sabrina; Dougans, Julie

2018-01-01

The West Antarctic Peninsula shelf is a region of high seasonal primary production which supports a large and productive food web, where macronutrients and inorganic carbon are sourced primarily from intrusions of warm saline Circumpolar Deep Water. We examined the cross-shelf modification of this water mass during mid-summer 2015 to understand the supply of nutrients and carbon to the productive surface ocean, and their subsequent uptake and cycling. We show that nitrate, phosphate, silicic acid and inorganic carbon are progressively enriched in subsurface waters across the shelf, contrary to cross-shelf reductions in heat, salinity and density. We use nutrient stoichiometric and isotopic approaches to invoke remineralization of organic matter, including nitrification below the euphotic surface layer, and dissolution of biogenic silica in deeper waters and potentially shelf sediment porewaters, as the primary drivers of cross-shelf enrichments. Regenerated nitrate and phosphate account for a significant proportion of the total pools of these nutrients in the upper ocean, with implications for the seasonal carbon sink. Understanding nutrient and carbon dynamics in this region now will inform predictions of future biogeochemical changes in the context of substantial variability and ongoing changes in the physical environment. This article is part of the theme issue ‘The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change’. PMID:29760112

Macronutrient and carbon supply, uptake and cycling across the Antarctic Peninsula shelf during summer.

PubMed

Henley, Sian F; Jones, Elizabeth M; Venables, Hugh J; Meredith, Michael P; Firing, Yvonne L; Dittrich, Ribanna; Heiser, Sabrina; Stefels, Jacqueline; Dougans, Julie

2018-06-28

The West Antarctic Peninsula shelf is a region of high seasonal primary production which supports a large and productive food web, where macronutrients and inorganic carbon are sourced primarily from intrusions of warm saline Circumpolar Deep Water. We examined the cross-shelf modification of this water mass during mid-summer 2015 to understand the supply of nutrients and carbon to the productive surface ocean, and their subsequent uptake and cycling. We show that nitrate, phosphate, silicic acid and inorganic carbon are progressively enriched in subsurface waters across the shelf, contrary to cross-shelf reductions in heat, salinity and density. We use nutrient stoichiometric and isotopic approaches to invoke remineralization of organic matter, including nitrification below the euphotic surface layer, and dissolution of biogenic silica in deeper waters and potentially shelf sediment porewaters, as the primary drivers of cross-shelf enrichments. Regenerated nitrate and phosphate account for a significant proportion of the total pools of these nutrients in the upper ocean, with implications for the seasonal carbon sink. Understanding nutrient and carbon dynamics in this region now will inform predictions of future biogeochemical changes in the context of substantial variability and ongoing changes in the physical environment.This article is part of the theme issue 'The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change'. © 2018 The Authors.

Nutrient cycle benchmarks for earth system land model

NASA Astrophysics Data System (ADS)

Zhu, Q.; Riley, W. J.; Tang, J.; Zhao, L.

2017-12-01

Projecting future biosphere-climate feedbacks using Earth system models (ESMs) relies heavily on robust modeling of land surface carbon dynamics. More importantly, soil nutrient (particularly, nitrogen (N) and phosphorus (P)) dynamics strongly modulate carbon dynamics, such as plant sequestration of atmospheric CO2. Prevailing ESM land models all consider nitrogen as a potentially limiting nutrient, and several consider phosphorus. However, including nutrient cycle processes in ESM land models potentially introduces large uncertainties that could be identified and addressed by improved observational constraints. We describe the development of two nutrient cycle benchmarks for ESM land models: (1) nutrient partitioning between plants and soil microbes inferred from 15N and 33P tracers studies and (2) nutrient limitation effects on carbon cycle informed by long-term fertilization experiments. We used these benchmarks to evaluate critical hypotheses regarding nutrient cycling and their representation in ESMs. We found that a mechanistic representation of plant-microbe nutrient competition based on relevant functional traits best reproduced observed plant-microbe nutrient partitioning. We also found that for multiple-nutrient models (i.e., N and P), application of Liebig's law of the minimum is often inaccurate. Rather, the Multiple Nutrient Limitation (MNL) concept better reproduces observed carbon-nutrient interactions.

Exploring the effects of black mangrove (Avicennia germinans) expansions on nutrient cycling in smooth cordgrass (Spartina alterniflora) marsh sediments of southern Louisiana, USA

NASA Astrophysics Data System (ADS)

Henry, K. M.; Twilley, R. R.

2011-12-01

Located at the northernmost extent of mangroves in the Gulf of Mexico, coastal Louisiana (LA) provides an excellent opportunity to study the effects of a climate-induced vegetation shift on nutrient cycling within an ecosystem. Climate throughout the Gulf Coast region is experiencing a general warming trend and scientists predict both hotter summers (+1.5 to 4 °C) and warmer winters (+1.5 to 5.5 °C) by 2100. Over the last two decades, mild winter temperatures have facilitated the expansion of black mangrove trees (Avicennia germinans) into the smooth cordgrass (Spartina alterniflora) along parts of the LA coast. Due to differences in morphology and physiology between these two species, the expansion of Avicennia has the potential to greatly alter sediment biogeochemistry, especially nutrient cycling. With such an extensive history of coastal nutrient enrichment and eutrophication in the Mississippi River delta, it is important to understand how nutrient cycling, retention, and removal in this region will be affected by this climate-induced vegetation expansion. We examined the effect of this species shift on porewater salinity, sulfide, and dissolved inorganic nutrient concentrations (nitrite, nitrate, ammonium, and phosphate) as well as sediment oxidation-reduction potential, bulk density, and nutrient content (carbon, nitrogen, phosphorus). We also measured net dinitrogen (N2:Ar), oxygen, and dissolved inorganic nutrient fluxes on intact, non-vegetated sediment cores collected from both Spartina and Avicennia habitats. Spartina sediments were more reducing, with higher concentrations of sulfides and ammonium. We found no significant difference between Spartina and Avicennia sediment dinitrogen, oxygen, or dissolved inorganic nutrient fluxes. Net dinitrogen fluxes for both habitat types were predominately positive, indicating higher rates of denitrification than nitrogen fixation at these sites. Sediments were primarily a nitrate sink, but functioned as both a source and sink of nitrite, ammonium, and phosphate depending on the season and light conditions. Further sediment analysis showed no significant difference in bulk density, carbon, nitrogen, or phosphorus content between Spartina and Avicennia sediments. Marine sediments high in bulk density and phosphorus content and low carbon and nitrogen content dominated the top several centimeters in both Spartina and Avicennia habitats. These surprising but reassuring results suggest that in a region where allochthonous sediment input dominates organic accretion from the primary producers, the climate-induced shift from Spartina to Avicennia will have little to no affect on littoral nutrient cycling.

Influences of Moisture Regimes and Functional Plant Types on Nutrient Cycling in Permafrost Regions

NASA Astrophysics Data System (ADS)

McCaully, R. E.; Arendt, C. A.; Newman, B. D.; Heikoop, J. M.; Wilson, C. J.; Sevanto, S.; Wales, N. A.; Wullschleger, S.

2017-12-01

In the permafrost-dominated Arctic, climatic feedbacks exist between permafrost, soil moisture, functional plant type and presence of nutrients. Functional plant types present within the Arctic regulate and respond to changes in hydrologic regimes and nutrient cycling. Specifically, alders are a member of the birch family that use root nodules to fix nitrogen, which is a limiting nutrient strongly linked to fertilizing Arctic ecosystems. Previous investigations in the Seward Peninsula, AK show elevated presence of nitrate within and downslope of alder patches in degraded permafrost systems, with concentrations an order of magnitude greater than that of nitrate measured above these patches. Further observations within these degraded permafrost systems are crucial to assess whether alders are drivers of, or merely respond to, nitrate fluxes. In addition to vegetative feedbacks with nitrate supply, previous studies have also linked low moisture content to high nitrate production. Within discontinuous permafrost regions, the absence of permafrost creates well-drained regions with unsaturated soils whereas the presence of permafrost limits vertical drainage of soil-pore water creating elevated soil moisture content, which likely corresponds to lower nitrate concentrations. We investigate these feedbacks further in the Seward Peninsula, AK, through research supported by the United States Department of Energy Next Generation Ecosystem Experiment (NGEE) - Arctic. Using soil moisture and thaw depth as proxies to determine the extent of permafrost degradation, we identify areas of discontinuous permafrost over a heterogeneous landscape and collect co-located soilwater chemistry samples to highlight the complex relationships that exist between alder patches, soil moisture regimes, the presence of permafrost and available nitrate supply. Understanding the role of nitrogen in degrading permafrost systems, in the context of both vegetation present and soil moisture, is crucial to understand the impacts of a warming climate on biogeochemical cycling in permafrost regions.

The microbial perspective of organic matter turnover and nutrient cycling in tropical soils

NASA Astrophysics Data System (ADS)

Rasche, Frank

2017-04-01

A primary goal of low-input small-holder farming systems in the tropics is the appropriate management of organic matter (OM) turnover and nutrient cycling via adapted agricultural practices. These emphasize the promotion of soil organic matter (SOM) turnover and carbon (C) sequestration, nutrient use efficiency and soil microbial activity. Since soil microbial communities are acknowledged as key players in the terrestrial C and nutrient (e.g., nitrogen (N), phosphorus (P)) cycles, they may respond sensitively to agricultural management with shifts in their community structure as well as functional traits (i.e., decomposition, mineralization). This may be in particular evident for tropical, agricultural soils which show an accelerated microbial decomposition activity induced by favourable climatic and unique physico-chemical soil conditions. While modern molecular techniques advanced primarily the understanding about the microbiome and their functional traits interacting closely with SOM dynamics in temperate soils, tropical soils under agricultural use have been still neglected to a great extent. The majority of available studies revealed mainly descriptive data on the structural composition of microbial communities rather than questioning if detected structural alterations of the soil microbiome influenced key processes in N and P cycling which actually maintain ecosystem functioning and soil productivity. This talk highlights latest efforts in deploying molecular techniques to study the compositional status of soil microbial decomposer communities and their functional attributes in response to land use change and OM management in tropical agro-ecosystems.

Synthesis of data from high-frequency nutrient and associated biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California

USGS Publications Warehouse

Downing, Bryan D.; Bergamaschi, Brian A.; Kraus, Tamara E.C.

2017-07-11

Executive SummaryThis report is the second in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). The purpose of this report is to synthesize the data available from a nutrient and water-quality HF (about every 15 minutes) monitoring network operated by the U.S. Geological Survey in the northern Delta. In this report, we describe the network and focus on the purpose of each station. We then present and discuss the available data, at various timescales—first at the monthly, seasonal, and inter-annual timescales, and second, for comparison, at the tidal and event timescales. As expected, we determined that there is substantial variability in nitrate-N concentrations at short timescales within hours, but also significant variability at longer timescales such as months or years. Resolving this variability is made possible by the HF data, with the largest variability caused by storms, tides, and diel biological processes. Given this large temporal variability, calculations of cumulative nutrient fluxes (for example, daily, monthly, or annual loads) is difficult without HF data. For example, in the Cache Slough, calculation of the annual load without the tidal variability resulted in a 30 percent underestimation of the true annual load value. We conclude that HF measurements are important for accurate determination of fluxes and loads in tidal environments, but, more importantly, provide important insights into processes and rates of nutrient cycling.This report, along with the other two reports of this series (Bergamaschi and others, 2017; Kraus, Bergamaschi, and others, 2017), was drafted in cooperation with the Delta Regional Monitoring Program to help scientists, managers, and planners understand how HF data improve our understanding of nutrient sources and sinks, drivers, and effects in the Delta. The first report in the series (Kraus, Bergamaschi, and others, 2017) provides an introduction to the reasons for and fundamental concepts behind using HF monitoring measurements, including a brief summary of nutrient status and trends in the Delta and an extensive literature review showing how and where other research and monitoring programs have used HF monitoring to improve our understanding of nutrient cycling. The report covers the various technologies available for HF nutrient monitoring and presents the different ways HF monitoring instrumentation may be used for fixed station and spatial assessments. Finally, it presents numerous examples of how HF measurements are currently (2017) being used in the Delta to examine how nutrients and nutrient cycling are related to aquatic habitat conditions.The third report in the series (Bergamaschi and others, 2017) provides the background, principles, and considerations for designing an HF nutrient-monitoring network for the Delta to address high-priority, nutrient-management questions. The report starts with discussion of the high‑priority management questions to be addressed, continues through discussion of the questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient-monitoring network designs for the Delta, proposed to address high-priority questions identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015).

Nutrient budgets in the subtropical ocean gyres dominated by lateral transport

NASA Astrophysics Data System (ADS)

Letscher, Robert T.; Primeau, François; Moore, J. Keith

2016-11-01

Ocean circulation replenishes surface nutrients depleted by biological production and export. Vertical processes are thought to dominate, but estimated vertical nutrient fluxes are insufficient to explain observed net productivity in the subtropical ocean gyres. Lateral inputs help balance the North Atlantic nutrient budget, but their importance for other gyres has not been demonstrated. Here we use an ocean model that couples circulation and ecosystem dynamics to show that lateral transport and biological uptake of inorganic and organic forms of nitrogen and phosphorus from the gyre margins exceeds the vertical delivery of nutrients, supplying 24-36% of the nitrogen and 44-67% of the phosphorus required to close gyre nutrient budgets. At the Bermuda and Hawaii time-series sites, nearly half of the annual lateral supply by lateral transport occurs during the summer-to-fall stratified period, helping explain seasonal patterns of inorganic carbon drawdown and nitrogen fixation. Our study confirms the importance of upper-ocean lateral nutrient transport for understanding the biological cycles of carbon and nutrients in the ocean's largest biome.

Soil mineralogy and microbes determine forest life history strategy and carbon cycling in humid tropical forests

NASA Astrophysics Data System (ADS)

Soong, J.; Verbruggen, E.; Peñuelas, J.; Janssens, I. A.; Grau, O.

2017-12-01

Tropical forests account for over one third of global terrestrial gross primary productivity and cycle more C than any other ecosystem on Earth. However, we still lack a mechanistic understanding of how such high productivity is maintained on the old, highly weathered and phosphorus depleted soils in the tropics. We hypothesized that heterogeneity in soil texture, mineralogy and microbial community composition may be the major drivers of differences in soil C storage and P limitation across tropical forests. We sampled 12 forest sites across a 200 km transect in the humid neo-tropics of French Guiana that varied in soil texture, precipitation and mineralogy. We found that soil texture was a major driver of soil carbon stocks and forest life history strategy, where sandy forests have lower soil C stocks, slower turnover and decomposition and a more closed nutrient cycle while clayey forests have higher soil C stocks, faster turnover and a more leaky nutrient cycle (using natural abundance stable isotope evidence). We found that although the presence of Al and Fe oxides in the clayey soils occludes soil organic matter and P, a greater abundance of arbuscular mycorrhizal fungi help forests to access occluded P in clayey soils fueling higher turnover and faster decomposition rates. Evidence from a laboratory incubation of tropical soils with nutrient additions further demonstrates the de-coupling of microbial P demands from C:N limitations providing further evidence for the need to examine microbial stoichiometry to explain C cycling in the P-limited tropics. We argue that microbial community composition and physiological demands, constrained within the limitations of soil mineralogical reactivity, largely controls nutrient and C cycling in tropical forest soils. Together our observational field study and laboratory incubation provide a unique dataset to shed light on the mineralogical and microbial controls on C and nutrient cycling in tropical soils. By integrating microbial, soil, litter and forest metrics we describe how microbes, minerals and soil organic matter act as an ecosystem property driving forest dynamics via microbial and plant stoichiometric constraints.

Atmosphere-Forest Exchange: Important Questions Regarding the Atmosphere's Role in the Delivery of Nutrient Nitrogen and Impacts on Nitrogen and Carbon Cycling

NASA Astrophysics Data System (ADS)

Carroll, M.; Shepson, P. B.; Bertman, S. B.; Sparks, J. P.; Holland, E. A.

2002-12-01

Atmosphere-Forest Exchange: Important Questions Regarding the Atmosphere's Role in the Delivery of Nutrient Nitrogen and Impacts on Nitrogen and Carbon Cycling Atmospheric composition and chemistry directly affect ecosystem nitrogen cycling and indirectly affect ecosystem carbon cycling and storage. Current understanding of atmosphere-forest nitrogen exchange and subsequent impacts is based almost exclusively on nitrogen deposition data obtained from networks using buckets placed in open areas, studies involving inorganic nitrogen, frequently with enhanced N deposition inputs applied only to soils, and that ignore multiple stresses (e.g., the combined effects of aerosols, ozone exposure, elevated CO2, and drought). Current models of nitrogen cycling treat deposited nitrogen (e.g., HNO3 and NO3-) as a permanent sink whereas data appear to indicate that photolytic and heterogeneous chemical processes occurring on surfaces and in dew can result in the re-evolution of gaseous species such as NO and HONO. Similarly, the direct uptake of gaseous nitrogen compounds by foliage has been neglected, compromising conclusions drawn from deposition experiments and ignoring a mechanism that may significantly affect nitrogen cycling and carbon storage, one that may become more significant with future atmospheric and climate change. We hypothesize that the atmosphere plays a significant role in the delivery of nutrient nitrogen to the N-limited mixed hardwood forest at the PROPHET research site at the University of Michigan Biological Station. We assert that a complete understanding of atmosphere- biosphere interactions and feedbacks is required to develop a predictive capability regarding forest response to increasing atmospheric CO2, reactive nitrogen, oxidants, and aerosols, increasing nitrogen and acidic deposition, and anticipated climate change. We further assert that conclusions drawn from studies that are limited to inorganic nitrogen, fertilization of soils, and/or that neglect the role of the canopy (in N uptake and/or remobilization) may not produce a complete understanding of N and C cycling in terrestrial ecosystems, including atmosphere-biosphere interactions and feedbacks. Here, as part of a new PROPHET focus on Biosphere Exchange of Atmospheric Carbon and Odd Nitrogen (BEACON), we identify a number of issues associated with nitrogen limited forest ecosystems and nitrogen saturation and important science questions that require collaborative studies involving the atmospheric and biospheric science communities.

Biogas from Marine Macroalgae: a New Environmental Technology — Life Cycle Inventory for a Further LCA

NASA Astrophysics Data System (ADS)

Romagnoli, Francesco; Blumberga, Dagnija; Gigli, Emanuele

2010-01-01

The main goal of this paper is to analyze the innovative process of production of biogas (via fermentation processes) using marine macroalgae as feedstock in a pilot project plant in Augusta (Sicily, Italy). Algae, during their growth, have the capacity to assimilate nutrients and thus subsequent harvesting of the algal biomass recovers the nutrients from biowaste sources giving the possibility to transform negative environmental externalities in positive mainly in terms of eutrophication and climate change impact categories. The paper presents a novel environmental technology for the production of biogas and 2nd generation biofuel (liquid biomethane) after an upgrading process through the use of a cryogenic technology. The paper would also like to make the first attempt at understanding the possibility to implement this innovative technology in the Latvian context. The first calculations and assumptions for the Life Cycle Inventory for a further Life Cycle Assessment are presented.

Environment impacts the metabolic dependencies of Ras-driven non-small cell lung cancer

PubMed Central

Davidson, Shawn M.; Papagiannakopoulos, Thales; Olenchock, Benjamin A.; Heyman, Julia E.; Keibler, Mark A.; Luengo, Alba; Bauer, Matthew R.; Jha, Abhishek K.; O’Brien, James P.; Pierce, Kerry A.; Gui, Dan Y.; Sullivan, Lucas B.; Wasylenko, Thomas M.; Subbaraj, Lakshmipriya; Chin, Christopher R.; Stephanopolous, Gregory; Mott, Bryan T.; Jacks, Tyler; Clish, Clary B.; Vander Heiden, Matthew G.

2016-01-01

SUMMARY Cultured cells convert glucose to lactate and glutamine is the major source of tricarboxylic acid (TCA) cycle carbon, but whether the same metabolic phenotype is found in tumors is less studied. We infused mice with lung cancers with isotope-labeled glucose or glutamine and compared the fate of these nutrients in tumor and normal tissue. As expected, lung tumors exhibit increased lactate production from glucose. However, glutamine utilization by both lung tumors and normal lung was minimal, with lung tumors showing increased glucose contribution to the TCA cycle relative to normal lung tissue. Deletion of enzymes involved in glucose oxidation demonstrates that glucose carbon contribution to the TCA cycle is required for tumor formation. These data suggest that understanding nutrient utilization by tumors can predict metabolic dependencies of cancers in vivo. Furthermore, these data argue that the in vivo environment is an important determinant of the metabolic phenotype of cancer cells. PMID:26853747

Forest management and nutrient cycling in eastern hardwoods

Treesearch

James H. Patric; David W. Smith

1975-01-01

The literature was reviewed for reports on nutrient cycling in the eastern deciduous forest, particularly with respect to nitrogen, and for effects of forest management on the nutrient cycle. Although most such research has dealt with conifers, a considerable body of literature relates to hardwoods. Usually, only those references that dealt quantitatively with nutrient...

Reviews and syntheses: Systematic Earth observations for use in terrestrial carbon cycle data assimilation systems

NASA Astrophysics Data System (ADS)

Scholze, Marko; Buchwitz, Michael; Dorigo, Wouter; Guanter, Luis; Quegan, Shaun

2017-07-01

The global carbon cycle is an important component of the Earth system and it interacts with the hydrology, energy and nutrient cycles as well as ecosystem dynamics. A better understanding of the global carbon cycle is required for improved projections of climate change including corresponding changes in water and food resources and for the verification of measures to reduce anthropogenic greenhouse gas emissions. An improved understanding of the carbon cycle can be achieved by data assimilation systems, which integrate observations relevant to the carbon cycle into coupled carbon, water, energy and nutrient models. Hence, the ingredients for such systems are a carbon cycle model, an algorithm for the assimilation and systematic and well error-characterised observations relevant to the carbon cycle. Relevant observations for assimilation include various in situ measurements in the atmosphere (e.g. concentrations of CO2 and other gases) and on land (e.g. fluxes of carbon water and energy, carbon stocks) as well as remote sensing observations (e.g. atmospheric composition, vegetation and surface properties).We briefly review the different existing data assimilation techniques and contrast them to model benchmarking and evaluation efforts (which also rely on observations). A common requirement for all assimilation techniques is a full description of the observational data properties. Uncertainty estimates of the observations are as important as the observations themselves because they similarly determine the outcome of such assimilation systems. Hence, this article reviews the requirements of data assimilation systems on observations and provides a non-exhaustive overview of current observations and their uncertainties for use in terrestrial carbon cycle data assimilation. We report on progress since the review of model-data synthesis in terrestrial carbon observations by Raupach et al.(2005), emphasising the rapid advance in relevant space-based observations.

Fasting or fear: disentangling the roles of predation risk and food deprivation in the nitrogen metabolism of consumers.

PubMed

Dalton, Christopher M; Tracy, Karen E; Hairston, Nelson G; Flecker, Alexander S

2018-03-01

Predators can alter nutrient cycles simply by inducing stress in prey. This stress accelerates prey's protein catabolism, nitrogen waste production, and nitrogen cycling. Yet predators also reduce the feeding rates of their prey, inducing food deprivation that is expected to slow protein catabolism and nitrogen cycling. The physiology of prey under predation risk thus balances the influences of predation risk and food deprivation, and this balance is central to understanding the role of predators in nutrient cycles. We explored the separate and combined effects of predation risk and food deprivation on prey physiology and nutrient cycling by exposing guppies (Poecilia reticulata) to predation risk and food deprivation in a 2 × 2 design. We simulated predation risk using chemical cues from a natural predator of guppies, and we created food deprivation by rationing food availability. We measured guppy response as food consumption, growth, tissue energy density, tissue carbon:nitrogen, and nitrogen (N) excretion and assimilation. We found that N-linked physiological processes (N consumption, assimilation, excretion) were strongly affected by predation risk, independent of food consumption. Guppies excreted substantially less under predation risk than they did under food deprivation or control conditions. These results suggest that predation risk, per se, triggers physiological changes in guppies that increase N retention and decrease N excretion. We suggest that slower N metabolism under predation risk is an adaptive response that minimizes protein loss in the face of predictable, predator-induced food restriction. Notably, N metabolism shares common hormonal control with food seeking behavior, and we speculate that increased N retention is a direct and immediate result of reduced food seeking under predation risk. Contrary to predation-stress-based hypotheses for how predators affect nutrient cycling by prey, our result indicates that even short-term exposure to predators may decelerate, rather than accelerate, the speed of N cycling by suppressing N turnover by prey. © 2018 by the Ecological Society of America.

Metabarcoding: a powerful tool to investigate microbial communities and shape future plant protection strategies

USDA-ARS?s Scientific Manuscript database

Microorganisms are the main drivers shaping the functioning and equilibrium of all ecosystems, contributing to nutrient cycling, primary production, litter decomposition, and multi-trophic interactions. Knowledge about the microbial assemblies in specific ecological niches is pivotal to understand ...

13C AND 15N IN MICROARTHROPODS REVEAL LITTLE RESPONSE OF DOUGLAS-FIR ECOSYSTEMS TO CLIMATE CHANGE

EPA Science Inventory

Understanding ecosystem carbon (C) and nitrogen (N) cycling under global change requires experiments maintaining natural interactions among soil structure, soil communities, nutrient availability, and plant growth. In model Douglas-fir ecosystems maintained for five growing seaso...

Carbon and nitrogen dynamics across a bedrock-regulated subarctic pH gradient

NASA Astrophysics Data System (ADS)

Tomczyk, N.; Heim, E. W.; Sadowsky, J.; Remiszewski, K.; Varner, R. K.; Bryce, J. G.; Frey, S. D.

2014-12-01

Bedrock geochemistry has been shown to influence landscape evolution due to nutrient limitation on primary production. There may also be less direct interactions between bedrock-derived chemicals and ecosystem function. Effects of calcium (Ca) and pH on soil carbon (C) and nitrogen (N) cycling have been shown in acid impacted forests o f North America. Understanding intrinsic factors that affect C and nutrient dynamics in subarctic ecosystems has implications for how these ecosystems will respond to a changing climate. How the soil microbial community allocates enzymes to acquire resources from the environment can indicate whether a system is nutrient or energy limited. This study examined whether bedrock geochemistry exerts pressure on nutrient cycles in the overlying soils. In thin, weakly developed soils, bedrock is the primary mineral material and is a source of vital nutrients. Nitrogen (N) and C are not derived from bedrock, but their cycling is still affected by reactions with geologically-derived chemicals. Our study sites near Abisko, Sweden (~68°N) were selected adjacent to five distinct bedrock outcrops (quartzite, slate, carbonate, and two different metasedimenty units). All sites were at a similar elevation (~700 m a.s.l.) and had similar vegetation (subarctic heath). Nutrient concentrations in bedrock and soils were measured in addition to soil microbial biomass and extracellular enzyme activity. We found a statistically significant correlation between soil Ca concentrations and soil pH (r = 0.88, p < 0.01). There were also significant relationships between soil pH and the ratio of C-acquiring to N-acquiring enzyme activity (r = -0.89, p < 0.01), soil pH and soil C-to-N ratio (r = -0.76, p < 0.01), and the ratio of C-acquiring to N-acquiring enzyme activity and soil C-to-N ratio (r = 0.78, p < 0.01). These results suggest that soil Ca concentrations influence C and N cycling dynamics in these soils through their effect on soil pH.

Investigating the Effect of Livestock Grazing and Associated Plant Community Shifts on Carbon and Nutrient Cycling in Alberta, Canada

NASA Astrophysics Data System (ADS)

Hewins, D. B.; Chuan, S.; Stolnikova, E.; Bork, E. W.; Carlyle, C. N.; Chang, S. X.

2015-12-01

Grassland ecosystems are ubiquitous across the globe covering an estimated 40 % of Earth's terrestrial landmass. These ecosystems are widely valued for providing forage for domestic livestock and a suite of important ecosystem goods and services including carbon (C) storage. Despite storing more than 30 % of soil C globally, the effect of both livestock grazing and the associated change in plant community structure in response to grazing on C and nutrient cycling remains uncertain. To gain a quantitative understanding of the direct and indirect effects of livestock grazing on C and nutrient cycling, we established study sites at 15 existing site localities with paired long-term grazing (ca. 30 y) and non-grazed treatments (totaling 30 unique plant communities). Our sites were distributed widely across Alberta in three distinct grassland bioclimatic zones allowing us to make comparisons across the broad range of climate variability typical of western Canadian grasslands. In each plant community we decomposed 5 common plant species that are known to increase or decrease in response to grazing pressure, a unique plant community sample, and a cellulose paper control. We measured mass loss, initial lignin, C and N concentrations at 0, 1, 3, 6 and 12 months of field incubation. In addition we assayed hydrolytic and oxidative extracellular enzymes associated with for C (n= 5 hydrolytic; phenoloxidase and peroxidase) and nutrients (i.e. N and P; n=1 ea.) cycling from each litter sample at each collection. Our results suggest that by changing the plant community structure, grazing can affect rates of decomposition and associated biogeochemical cycling by changing plant species and associated litter inputs. Moreover, measures of microbial function are controlled by site-specific conditions (e.g. temperature and precipitation), litter chemistry over the course of our incubation.

Bacteria Contribute to Sediment Nutrient Release and Reflect Progressed Eutrophication-Driven Hypoxia in an Organic-Rich Continental Sea

PubMed Central

Sinkko, Hanna; Lukkari, Kaarina; Sihvonen, Leila M.; Sivonen, Kaarina; Leivuori, Mirja; Rantanen, Matias; Paulin, Lars; Lyra, Christina

2013-01-01

In the sedimental organic matter of eutrophic continental seas, such as the largest dead zone in the world, the Baltic Sea, bacteria may directly participate in nutrient release by mineralizing organic matter or indirectly by altering the sediment’s ability to retain nutrients. Here, we present a case study of a hypoxic sea, which receives riverine nutrient loading and in which microbe-mediated vicious cycles of nutrients prevail. We showed that bacterial communities changed along the horizontal loading and vertical mineralization gradients in the Gulf of Finland of the Baltic Sea, using multivariate statistics of terminal restriction fragments and sediment chemical, spatial and other properties of the sampling sites. The change was mainly explained by concentrations of organic carbon, nitrogen and phosphorus, which showed strong positive correlation with Flavobacteria, Sphingobacteria, Alphaproteobacteria and Gammaproteobacteria. These bacteria predominated in the most organic-rich coastal surface sediments overlain by oxic bottom water, whereas sulphate-reducing bacteria, particularly the genus Desulfobacula, prevailed in the reduced organic-rich surface sediments in the open sea. They correlated positively with organic nitrogen and phosphorus, as well as manganese oxides. These relationships suggest that the bacterial groups participated in the aerobic and anaerobic degradation of organic matter and contributed to nutrient cycling. The high abundance of sulphate reducers in the surficial sediment layers reflects the persistence of eutrophication-induced hypoxia causing ecosystem-level changes in the Baltic Sea. The sulphate reducers began to decrease below depths of 20 cm, where members of the family Anaerolineaceae (phylum Chloroflexi) increased, possibly taking part in terminal mineralization processes. Our study provides valuable information on how organic loading affects sediment bacterial community compositions, which consequently may maintain active nutrient recycling. This information is needed to improve our understanding on nutrient cycling in shallow seas where the dead zones are continuously spreading worldwide. PMID:23825619

Soil CO2 efflux and water use efficiency across diverse cover types in southern Appalachian hardwood forests

Treesearch

Ruba C. Bilal; John R. Seiler; Brian D. Strahm; John A. Peterson

2016-01-01

We are investigating biogeochemical cycling in a mixed hardwood forest in the Ridge and Valley physiographic province in Montgomery County, Virginia. The broad aim of the study is to understand how carbon, water and nutrient cycles vary among diverse stand types in a relatively small spatial area. The specific objectives here are to determine patterns in soil CO2...

Organic coating on biochar explains its nutrient retention and stimulation of soil fertility.

PubMed

Hagemann, Nikolas; Joseph, Stephen; Schmidt, Hans-Peter; Kammann, Claudia I; Harter, Johannes; Borch, Thomas; Young, Robert B; Varga, Krisztina; Taherymoosavi, Sarasadat; Elliott, K Wade; McKenna, Amy; Albu, Mihaela; Mayrhofer, Claudia; Obst, Martin; Conte, Pellegrino; Dieguez-Alonso, Alba; Orsetti, Silvia; Subdiaga, Edisson; Behrens, Sebastian; Kappler, Andreas

2017-10-20

Amending soil with biochar (pyrolized biomass) is suggested as a globally applicable approach to address climate change and soil degradation by carbon sequestration, reducing soil-borne greenhouse-gas emissions and increasing soil nutrient retention. Biochar was shown to promote plant growth, especially when combined with nutrient-rich organic matter, e.g., co-composted biochar. Plant growth promotion was explained by slow release of nutrients, although a mechanistic understanding of nutrient storage in biochar is missing. Here we identify a complex, nutrient-rich organic coating on co-composted biochar that covers the outer and inner (pore) surfaces of biochar particles using high-resolution spectro(micro)scopy and mass spectrometry. Fast field cycling nuclear magnetic resonance, electrochemical analysis and gas adsorption demonstrated that this coating adds hydrophilicity, redox-active moieties, and additional mesoporosity, which strengthens biochar-water interactions and thus enhances nutrient retention. This implies that the functioning of biochar in soil is determined by the formation of an organic coating, rather than biochar surface oxidation, as previously suggested.

Hyporheic Interfaces Serve as Ecological Control Points for Mountainous Landscape Biological Productivity

NASA Astrophysics Data System (ADS)

Newcomer, M. E.; Dwivedi, D.; Raberg, J.; Fox, P. M.; Nico, P. S.; Wainwright, H. M.; Conrad, M. E.; Bill, M.; Bouskill, N.; Williams, K. H.; Hubbard, S.; Steefel, C. I.

2017-12-01

Riverine systems in snow-dominated mountainous regions often express complex biogeochemistry and river nutrient indicators as a function of hydrologic variability. In early spring, meltwater infiltration from a ripened snowpack creates a hydrological gradient through hillslopes, floodplains, and hyporheic zones. During this time, these systems are more-or-less a passive filter that allows the rising limb of the hydrograph to display chemo-dynamic relationships (inversely proportional) with solutes and nutrients. During the growing season, temperatures, plants, microbes, and hydrologic gradients shift dramatically and activate hyporheic-zone biogeochemistry as a major control on water nutrient degradation. Hyporheic biogeochemical reliance on the timing of meltwater infiltration and the possibility of a longer vernal window under future climate change indicates the importance of hyporheic cycling as the dominant ecological control point on carbon and nitrogen fluxes and transformations. The objective of our study is to develop a predictive understanding of the subsurface and surface controls on hyporheic biogeochemical behavior through data-model integration. Data from our 2017 field campaign in the East River, Colorado, a pristine, mountainous watershed, were taken at key times during the rising, peak, falling, and dry limb of the hydrograph. Throughout multiple locations across this spatial and temporal gradient, we measured surface and subsurface gases, geochemistry, isotopes, and hydrological flow conditions and used this data to constrain a numerical flow and reactive transport model of the hyporheic zone that included microbial and flow feedback dynamics. Our data coupled with the predictive power of our numerical model reveal that the hyporheic zone serves dual roles throughout the year—as a net source of nutrients and solutes during the early vernal phase, shifting to a net sink of nutrients during the summer dry season. The possibility of a future lengthened vernal window motivates a better understanding of the role each ecological control point plays in processing landscape biological productivity and for understanding biogeochemical cycling in riverine systems.

Using Ants To Investigate the Environment.

ERIC Educational Resources Information Center

Hagevik, Rita A.

2003-01-01

Describes three inquiry-based activities designed for students to begin to understand complex environmental relationships in their own backyard. Includes investigations of ants, which allow students to establish a baseline survey of ant fauna, test the importance of ants in nutrient cycling and soil structure maintenances, and increase student…

Successional dynamics drive tropical forest nutrient limitation

NASA Astrophysics Data System (ADS)

Chou, C.; Hedin, L. O. O.

2017-12-01

It is increasingly recognized that nutrients such as N and P may significantly constrain the land carbon sink. However, we currently lack a complete understanding of these nutrient cycles in forest ecosystems and how to incorporate them into Earth System Models. We have developed a framework of dynamic forest nutrient limitation, focusing on the role of secondary forest succession and canopy gap disturbances as bottlenecks of high plant nutrient demand and limitation. We used succession biomass data to parameterize a simple ecosystem model and examined the dynamics of nutrient limitation throughout tropical secondary forest succession. Due to the patterns of biomass recovery in secondary tropical forests, we found high nutrient demand from rapid biomass accumulation in the earliest years of succession. Depending on previous land use scenarios, soil nutrient availability may also be low in this time period. Coupled together, this is evidence that there may be high biomass nutrient limitation early in succession, which is partially met by abundant symbiotic nitrogen fixation from certain tree species. We predict a switch from nitrogen limitation in early succession to one of three conditions: (i) phosphorus only, (ii) phosphorus plus nitrogen, or (iii) phosphorus, nitrogen, plus light co-limitation. We will discuss the mechanisms that govern the exact trajectory of limitation as forests build biomass. In addition, we used our model to explore scenarios of tropical secondary forest impermanence and the impacts of these dynamics on ecosystem nutrient limitation. We found that secondary forest impermanence exacerbates nutrient limitation and the need for nitrogen fixation early in succession. Together, these results indicate that biomass recovery dynamics early in succession as well as their connection to nutrient demand and limitation are fundamental for understanding and modeling nutrient limitation of the tropical forest carbon sink.

Native Mussels Alter Nutrient Availability and Reduce Blue-Green Algae Abundance

EPA Science Inventory

Nutrient cycling is a key process that ties all organisms together. This is especially apparent in stream environments in which nutrients are taken up readily and cycled through the system in a downstream trajectory. Ecological stoichiometry predicts that biogeochemical cycles of...

Continuous Water Quality Monitoring in the Sacramento-San Joaquin Delta to support Ecosystem Science

NASA Astrophysics Data System (ADS)

Downing, B. D.; Bergamaschi, B. A.; Pellerin, B. A.; Saraceno, J.; Sauer, M.; Kraus, T. E.; Burau, J. R.; Fujii, R.

2013-12-01

Characterizing habitat quality and nutrient availability to food webs is an essential step for understanding and predicting the success of pelagic organisms in the Sacramento-San Joaquin Delta (Delta). The difficulty is that water quality and nutrient supply changes continuously as tidal and wind-driven currents move new water parcels to and from comparatively static geomorphic settings. Understanding interactions between nutrient cycling, suspended sediment, and plankton dynamics with flow and tidal range relative to position in the estuary is critical to predicting and managing bottom up effects on aquatic habitat in the Delta. Historically, quantifying concentrations and loads in the Delta has relied on water quality data collected at monthly intervals. Current in situ optical sensors for nutrients, dissolved organic matter (DOM) and algal pigments (chlorophyll-A, phycocyanin) allow for real-time, high-frequency measurements on time scales of seconds, and extending up to years. Such data is essential for characterizing changes in water quality over short and long term temporal scales as well as over broader spatial scales. High frequency water quality data have been collected at key stations in the Delta since 2012. Sensors that continuously measure nitrate, DOM, algal pigments and turbidity have been co-located at pre-existing Delta flow monitoring stations. Data from the stations are telemetered to USGS data servers and are designed to run autonomously with a monthly service interval, where sensors are cleaned and checked against calibration standards. The autonomous system is verified against discrete samples taken monthly and intensively over periodic ebb to flood tidal cycles. Here we present examples of how coupled optical and acoustic data from the sensor network to improve our understanding of nutrient and DOM dynamics and fluxes. The data offer robust quantitative estimates of concentrations and constituent fluxes needed to investigate biogeochemical processes in tidal reaches of the Delta. The data is available in real time on the web and has proven invaluable for anticipating interactions between nutrient supply and the Delta landscape, and is useful for continued research in aspects of pelagic habitat quality, algal productivity, and food web dynamics.

AGGREGATED FILTER-FEEDING CONSUMERS ALTER NUTRIENT LIMITATION: CONSEQUENCES FOR ECOSYSTEM AND COMMUNITY DYNAMICS

EPA Science Inventory

Nutrient cycling is a key process that ties all organisms together. This is especially apparent in stream environments in which nutrients are taken up readily and cycled through the system in a downstream trajectory. Ecological stoichiometry predicts that biogeochemical cycles of...

Rumen bacterial community structure impacts feed efficiency in beef cattle

USDA-ARS?s Scientific Manuscript database

The importance of the rumen microbiota on nutrient cycling to the animal is well recognized; however, our understanding of the influence of the rumen microbiome composition on feed efficiency is limited. The rumen microbiomes of two large animal cohorts (125 heifers and 122 steers) were characterize...

Vertical patterns and controls of soil nutrients in alpine grassland: Implications for nutrient uptake.

PubMed

Tian, Liming; Zhao, Lin; Wu, Xiaodong; Fang, Hongbing; Zhao, Yonghua; Yue, Guangyang; Liu, Guimin; Chen, Hao

2017-12-31

Vertical patterns and determinants of soil nutrients are critical to understand nutrient cycling in high-altitude ecosystems; however, they remain poorly understood in the alpine grassland due to lack of systematic field observations. In this study, we examined vertical distributions of soil nutrients and their influencing factors within the upper 1m of soil, using data of 68 soil profiles surveyed in the alpine grassland of the eastern Qinghai-Tibet Plateau. Soil organic carbon (SOC) and total nitrogen (TN) stocks decreased with depth in both alpine meadow (AM) and alpine steppe (AS), but remain constant along the soil profile in alpine swamp meadow (ASM). Total phosphorus, Ca 2+ , and Mg 2+ stocks slightly increased with depth in ASM. K + stock decreased with depth, while Na + stock increased slightly with depth among different vegetation types; however, SO 4 2- and Cl - stocks remained relatively uniform throughout different depth intervals in the alpine grassland. Except for SOC and TN, soil nutrient stocks in the top 20cm soils were significantly lower in ASM compared to those in AM and AS. Correlation analyses showed that SOC and TN stocks in the alpine grassland positively correlated with vegetation coverage, soil moisture, clay content, and silt content, while they negatively related to sand content and soil pH. However, base cation stocks revealed contrary relationships with those environmental variables compared to SOC and TN stocks. These correlations varied between vegetation types. In addition, no significant relationship was detected between topographic factors and soil nutrients. Our findings suggest that plant cycling and soil moisture primarily control vertical distributions of soil nutrients (e.g. K) in the alpine grassland and highlight that vegetation types in high-altitude permafrost regions significantly affect soil nutrients. Copyright © 2017 Elsevier B.V. All rights reserved.

Biogeochemical processes on tree islands in the greater everglades: Initiating a new paradigm

USGS Publications Warehouse

Wetzel, P.R.; Sklar, Fred H.; Coronado, C.A.; Troxler, T.G.; Krupa, S.L.; Sullivan, P.L.; Ewe, S.; Price, R.M.; Newman, S.; Orem, W.H.

2011-01-01

Scientists' understanding of the role of tree islands in the Everglades has evolved from a plant community of minor biogeochemical importance to a plant community recognized as the driving force for localized phosphorus accumulation within the landscape. Results from this review suggest that tree transpiration, nutrient infiltration from the soil surface, and groundwater flow create a soil zone of confluence where nutrients and salts accumulate under the head of a tree island during dry periods. Results also suggest accumulated salts and nutrients are flushed downstream by regional water flows during wet periods. That trees modulate their environment to create biogeochemical hot spots and strong nutrient gradients is a significant ecological paradigm shift in the understanding of the biogeochemical processes in the Everglades. In terms of island sustainability, this new paradigm suggests the need for distinct dry-wet cycles as well as a hydrologic regime that supports tree survival. Restoration of historic tree islands needs further investigation but the creation of functional tree islands is promising. Copyright ?? 2011 Taylor & Francis Group, LLC.

Micro-halocline enabled nutrient recycling may explain extreme Azolla event in the Eocene Arctic Ocean.

PubMed

van Kempen, Monique M L; Smolders, Alfons J P; Lamers, Leon P M; Roelofs, Jan G M

2012-01-01

In order to understand the physicochemical mechanisms that could explain the massive growth of Azolla arctica in the Eocene Arctic Ocean, we carried out a laboratory experiment in which we studied the interacting effects of rain and wind on the development of salinity stratification, both in the presence and in the absence of a dense Azolla cover. Additionally, we carried out a mesocosm experiment to get a better understanding of the nutrient cycling within and beneath a dense Azolla cover in both freshwater and brackish water environments. Here we show that Azolla is able to create a windproof, small-scale salinity gradient in brackish waters, which allows for efficient recycling of nutrients. We suggest that this mechanism ensures the maintenance of a large standing biomass in which additional input of nutrients ultimately result in a further expansion of an Azolla cover. As such, it may not only explain the extent of the Azolla event during the Eocene, but also the absence of intact vegetative Azolla remains and the relatively low burial efficiency of organic carbon during this interval.

Micro-Halocline Enabled Nutrient Recycling May Explain Extreme Azolla Event in the Eocene Arctic Ocean

PubMed Central

van Kempen, Monique M. L.; Smolders, Alfons J. P.; Lamers, Leon P. M.; Roelofs, Jan G. M.

2012-01-01

In order to understand the physicochemical mechanisms that could explain the massive growth of Azolla arctica in the Eocene Arctic Ocean, we carried out a laboratory experiment in which we studied the interacting effects of rain and wind on the development of salinity stratification, both in the presence and in the absence of a dense Azolla cover. Additionally, we carried out a mesocosm experiment to get a better understanding of the nutrient cycling within and beneath a dense Azolla cover in both freshwater and brackish water environments. Here we show that Azolla is able to create a windproof, small-scale salinity gradient in brackish waters, which allows for efficient recycling of nutrients. We suggest that this mechanism ensures the maintenance of a large standing biomass in which additional input of nutrients ultimately result in a further expansion of an Azolla cover. As such, it may not only explain the extent of the Azolla event during the Eocene, but also the absence of intact vegetative Azolla remains and the relatively low burial efficiency of organic carbon during this interval. PMID:23166833

The nitrogen budget for different forest types in the central Congo Basin

NASA Astrophysics Data System (ADS)

Bauters, Marijn; Verbeeck, Hans; Cizungu, Landry; Boeckx, Pascal

2016-04-01

Characterization of fundamental processes in different forest types is vital to understand the interaction of forests with their changing environment. Recent data analyses, as well as modeling activities have shown that the CO2 uptake by terrestrial ecosystems strongly depends on site fertility, i.e. nutrient availability. Accurate projections of future net forest growth and terrestrial CO2 uptake thus necessitate an improved understanding on nutrient cycles and how these are coupled to the carbon (C) cycle in forests. This holds especially for tropical forests, since they represent about 40-50% of the total carbon that is stored in terrestrial vegetation, with the Amazon basin and the Congo basin being the largest two contiguous blocks. However, due to political instability and reduced accessibility in the central Africa region, there is a strong bias in scientific research towards the Amazon basin. Consequently, central African forests are poorly characterized and their role in global change interactions shows distinct knowledge gaps, which is important bottleneck for all efforts to further optimize Earth system models explicitly including this region. Research in the Congo Basin region should combine assessments of both carbon stocks and the underlying nutrient cycles which directly impact the forest productivity. We set up a monitoring network for carbon stocks and nitrogen fluxes in four different forest types in the Congo Basin, which is now operative. With the preliminary data, we can get a glimpse of the differences in nitrogen budget and biogeochemistry of African mixed lowland rainforest, monodominant lowland forest, mixed montane forest and eucalypt plantations.

Effects of wastewater on forested wetlands

USGS Publications Warehouse

Doyle, Thomas W.

2002-01-01

Cycling nutrient-enriched wastewater from holding ponds through natural, forested wetlands is a practice that municipal waste treatment managers are considering as a viable option for disposing of wastewater. In this wastewater cycling process, sewer effluent that has been circulated through aerated ponds is discharged into neighboring wetland systems. To understand how wastewater cycling affects forest and species productivity, researchers at the USGS National Wetlands Research Center conducted dendroecological investigations in a swamp system and in a bog system that have been exposed to wastewater effluent for many decades. Dendroecology involves the study of forest changes over time as interpreted from tree rings. Tree-ring chronologies describe the pattern and history of growth suppression and release that can be associated with aging and disturbances such as hurricanes, floods, and fires. But because of limited monitoring, little is known about the potential for long-term effects on forested wetlands as a result of wastewater flooding. USGS researchers used tree rings to detect the effect of wastewater cycling on tree growth. Scientists expected to find that tree-ring width would be increased as a result of added nutrients.

The Study of Microbial Environmental Processes Related to the Natural Attenuation of Uranium at the Rifle Site using Systems-level Biology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Methe, Barbara; Lipton, Mary; Mahadevan, Krishna

Microbes exist in communities in the environment where they are fundamental drivers of global carbon, nutrient and metal cycles. In subsurface environments, they possess significant metabolic potential to affect these global cycles including the transformation of radionuclides. This study examined the influence of microbial communities in sediment zones undergoing biogeochemical cycling of carbon, nutrients and metals including natural attenuation of uranium. This study examined the relationship of both the microbiota (taxonomy) and their metabolic capacity (function) in driving carbon, nutrient and metal cycles including uranium reduction at the Department of Energy (DOE) Rifle Integrated Field Research Challenge (RIFRC). Objectives ofmore » this project were: 1) to apply systems-level biology through application of ‘metaomics’ approaches (collective analyses of whole microbial community DNA, RNA and protein) to the study of microbial environmental processes and their relationship to C, N and metals including the influence of microbial communities on uranium contaminant mobility in subsurface settings undergoing natural attenuation, 2) improve methodologies for data generation using metaomics (collectively metagenomics, metatranscriptomics and proteomics) technologies and analysis and interpretation of that data and 3) use the data generated from these studies towards microbial community-scale metabolic modeling. The strategy for examining these subsurface microbial communities was to generate sequence reads from microbial community DNA (metagenomics or whole genome shotgun sequencing (WGS)) and RNA (metatranscriptomcs or RNAseq) and protein information using proteomics. Results were analyzed independently and through computational modeling. Overall, the community model generated information on the microbial community structure that was observed using metaomic approaches at RIFRC sites and thus provides an important framework for continued community modeling development. The model as created is capable of predicting the response of the community structure in changing environments such as anoxic/oxic conditions or limitations by carbon or nutrients. The ability to more accurately model these responses is critical to understanding carbon and energy flows in an ecosystem is critical towards improving our ability to make predictions that can be used to design more efficient remediation and management strategies, and better understand the implications of environmental perturbations on these ecosystems.« less

Growing Rocks: Implications of Lithification for Microbial Communities and Nutrient Cycling

NASA Astrophysics Data System (ADS)

Corman, J. R.; Poret-Peterson, A. T.; Elser, J. J.

2014-12-01

Lithifying microbial communities ("microbialites") have left their signature on Earth's rock record for over 3.4 billion years and are regarded as important players in paleo-biogeochemical cycles. In this project, we study extant microbialites to understand the interactions between lithification and resource availability. All microbes need nutrients and energy for growth; indeed, nutrients are often a factor limiting microbial growth. We hypothesize that calcium carbonate deposition can sequester bioavailable phosphorus (P) and expect the growth of microbialites to be P-limited. To test our hypothesis, we first compared nutrient limitation in lithifying and non-lithifying microbial communities in Río Mesquites, Cuatro Ciénegas. Then, we experimentally manipulated calcification rates in the Río Mesquites microbialites. Our results suggest that lithifying microbialites are indeed P-limited, while non-lithifying, benthic microbial communities tend towards co-limitation by nitrogen (N) and P. Indeed, in microbialites, photosynthesis and aerobic respiration responded positively to P additions (P<0.05). Organic carbon (OC) additions caused shifts in bacterial community composition based on analysis of 16S rRNA genes. Unexpectedly, calcification rates increased with OC additions (P<0.05), but not with P additions, suggesting that sulfate reduction may be an important pathway for calcification. Experimental reductions in calcification rates caused changes to microbial biomass OC and P concentrations (P<0.01 and P<0.001, respectively), although shifts depended on whether calcification was decreased abiotically or biotically. These results show that resource availability does influence microbialite formation and that lithification may promote phosphorus limitation; however, further investigation is required to understand the mechanism by which the later occurs.

Are patterns in nutrient limitation belowground consistent with those aboveground: Results from a 4 million year chronosequence

USGS Publications Warehouse

Reed, S.C.; Vitousek, P.M.; Cleveland, C.C.

2011-01-01

Accurately predicting the effects of global change on net carbon (C) exchange between terrestrial ecosystems and the atmosphere requires a more complete understanding of how nutrient availability regulates both plant growth and heterotrophic soil respiration. Models of soil development suggest that the nature of nutrient limitation changes over the course of ecosystem development, transitioning from nitrogen (N) limitation in 'young' sites to phosphorus (P) limitation in 'old' sites. However, previous research has focused primarily on plant responses to added nutrients, and the applicability of nutrient limitation-soil development models to belowground processes has not been thoroughly investigated. Here, we assessed the effects of nutrients on soil C cycling in three different forests that occupy a 4 million year substrate age chronosequence where tree growth is N limited at the youngest site, co-limited by N and P at the intermediate-aged site, and P limited at the oldest site. Our goal was to use short-term laboratory soil C manipulations (using 14C-labeled substrates) and longer-term intact soil core incubations to compare belowground responses to fertilization with aboveground patterns. When nutrients were applied with labile C (sucrose), patterns of microbial nutrient limitation were similar to plant patterns: microbial activity was limited more by N than by P in the young site, and P was more limiting than N in the old site. However, in the absence of C additions, increased respiration of native soil organic matter only occurred with simultaneous additions of N and P. Taken together, these data suggest that altered nutrient inputs into ecosystems could have dissimilar effects on C cycling above- and belowground, that nutrients may differentially affect of the fate of different soil C pools, and that future changes to the net C balance of terrestrial ecosystems will be partially regulated by soil nutrient status. ?? 2010 US Government.

Recent progress in understanding host immune response to Avian Coccidiosis: Th1 and Th17 responses

USDA-ARS?s Scientific Manuscript database

Coccidiosis is one of the most economically important diseases of chickens caused by Eimeria spp. since it destroys the intestinal epithelium resulting in nutrient malabsorption, body weight loss, and in severe cases, death. Since the life cycle of Eimeria parasites is complex and comprised of intra...

Lithologic composition and rock weathering potential of forested, glacial-till soils

Treesearch

Scott W. Bailey; James W. Hornbeck; James W. Hornbeck

1992-01-01

Describes methods for predicting lithologies present in soils developed on glacial till, and the potential weathering contributions from rock particles >2 mm in diameter. The methods are not quantitative in terms of providing weathering rates, but provide information that can further the understanding of forest nutrient cycles, and possibly assist with decisions...

Selenium as an Essential Micronutrient: Roles in Cell Cycle and Apoptosis

USDA-ARS?s Scientific Manuscript database

Selenium (Se) is an anticancer nutrient, and the essential role of Se in growth of most mammalian cells is well recognized but certain cancer cells appear to have acquired a survival advantage under conditions of Se-deficiency. The objective of the present study is to understand the molecular basis ...

Using Coupled Models to Study the Effects of River Discharge on Biogeochemical Cycling and Hypoxia in the Northern Gulf of Mexico

NASA Technical Reports Server (NTRS)

Penta, Bradley; Ko, D.; Gould, Richard W.; Arnone, Robert A.; Greene, R.; Lehrter, J.; Hagy, James; Schaeffer, B.; Murrell, M.; Kurtz, J.;

Phosphorus and potassium cycling in a long-term no-till integrated soybean-beef cattle production system under different grazing intensities in subtropics

USDA-ARS?s Scientific Manuscript database

Long-term crop-livestock integration enables constant and high nutrient cycling because animal, pasture and crop residues release nutrients at different rates. Therefore, appropriate management of these systems is needed to maximize the benefits of nutrient cycling. The objective of this study was t...

Wastewater treatment plant effluent introduces recoverable shifts in microbial community composition in urban streams

NASA Astrophysics Data System (ADS)

Ledford, S. H.; Price, J. R.; Ryan, M. O.; Toran, L.; Sales, C. M.

2017-12-01

New technologies are allowing for intense scrutiny of the impact of land use on microbial communities in stream networks. We used a combination of analytical chemistry, real-time polymerase chain reaction (qPCR) and targeted amplicon sequencing for a preliminary study on the impact of wastewater treatment plant effluent discharge on urban streams. Samples were collected on two dates above and below treatment plants on the Wissahickon Creek, and its tributary, Sandy Run, in Montgomery County, PA, USA. As expected, effluent was observed to be a significant source of nutrients and human and non-specific fecal associated taxa. There was an observed increase in the alpha diversity at locations immediately below effluent outflows, which contributed many taxa involved in wastewater treatment processes and nutrient cycling to the stream's microbial community. Unexpectedly, modeling of microbial community shifts along the stream was not controlled by concentrations of measured nutrients. Furthermore, partial recovery, in the form of decreasing abundances of bacteria and nutrients associated with wastewater treatment plant processes, nutrient cycling bacteria, and taxa associated with fecal and sewage sources, was observed between effluent sources. Antecedent moisture conditions impacted overall microbial community diversity, with higher diversity occurring after rainfall. These findings hint at resilience in stream microbial communities to recover from wastewater treatment plant effluent and are vital to understanding the impacts of urbanization on microbial stream communities.

Imaging and Analytical Approaches for Characterization of Soil Mineral Weathering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dohnalkova, Alice; Arey, Bruce; Varga, Tamas

Soil minerals weathering is the primary natural source of nutrients necessary to sustain productivity in terrestrial ecosystems. Soil microbial communities increase soil mineral weathering and mineral-derived nutrient availability through physical and chemical processes. Rhizosphere, the zone immediately surrounding plant roots, is a biogeochemical hotspot with microbial activity, soil organic matter production, mineral weathering, and secondary phase formation all happening in a small temporally ephemeral zone of steep geochemical gradients. The detailed exploration of the micro-scale rhizosphere is essential to our better understanding of large-scale processes in soils, such as nutrient cycling, transport and fate of soil components, microbial-mineral interactions, soilmore » erosion, soil organic matter turnover and its molecular-level characterization, and predictive modeling.« less

Nutrient resorption helps drive intra-specific coupling of foliar nitrogen and phosphorus under nutrient-enriched conditions

USGS Publications Warehouse

Xiao-Tao, Lü; Reed, Sasha C.; Yu, Qiang; Han, Xing-Guo

2016-01-01

Taken together, the results suggest plants in this ecosystem are much more responsive to changing N cycles than P cycles and emphasize the significance of nutrient resorption as an important plant control over the stoichiometric coupling of N and P under nutrient enriched conditions.

Native Mussels Alter Nutrient Availability and Reduce Blue ...

EPA Pesticide Factsheets

Nutrient cycling is a key process that ties all organisms together. This is especially apparent in stream environments in which nutrients are taken up readily and cycled through the system in a downstream trajectory. Ecological stoichiometry predicts that biogeochemical cycles of different elements are interdependent because the organisms that drive these cycles require fixed ratios of nutrients. There is growing recognition that animals play an important role in biogeochemical cycling across ecosystems. In particular, dense aggregations of consumers can create biogeochemical hotspots in aquatic ecosystems via nutrient translocation. We predicted that filter-feeding freshwater mussels, which occur as speciose, high biomass aggregates, would create biogeochemical hotspots in streams by altering nutrient limitation and algal dynamics. In a field study, we manipulated nitrogen and phosphorus using nutrient-diffusing substrates in areas with high and low mussel abundance, recorded algal growth and community composition, and determined in situ mussel excretion stoichiometry at 18 sites in 3 rivers (Kiamichi, Little, and Mt. Fork rivers, southcentral U.S.). Our results indicate that mussels greatly influence ecosystem processes by modifying the nutrients that limit primary productivity. Sites without mussels were N-limited with ~26% higher abundances of N-fixing blue-green algae, while sites with high mussel densities were co-limited (N and P) and dominated by diatoms

Organic Matter Remineralization Predominates Phosphorus Cycling in the Mid-Bay Sediments in the Chesapeake Bay

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sunendra, Joshi R.; Kukkadapu, Ravi K.; Burdige, David J.

2015-05-19

The Chesapeake Bay, the largest and most productive estuary in the US, suffers from varying degrees of water quality issues fueled by both point and non–point source nutrient sources. Restoration of the bay is complicated by the multitude of nutrient sources, their variable inputs and hydrological conditions, and complex interacting factors including climate forcing. These complexities not only restrict formulation of effective restoration plans but also open up debates on accountability issues with nutrient loading. A detailed understanding of sediment phosphorus (P) dynamics enables one to identify the exchange of dissolved constituents across the sediment- water interface and aid tomore » better constrain mechanisms and processes controlling the coupling between the sediments and the overlying waters. Here we used phosphate oxygen isotope ratios (δ18Op) in concert with sediment chemistry, XRD, and Mössbauer spectroscopy on the sediment retrieved from an organic rich, sulfidic site in the meso-haline portion of the mid-bay to identify sources and pathway of sedimentary P cycling and to infer potential feedback effect on bottom water hypoxia and surface water eutrophication. Isotope data indicate that the regeneration of inorganic P from organic matter degradation (remineralization) is the predominant, if not sole, pathway for authigenic P precipitation in the mid-bay sediments. We interpret that the excess inorganic P generated by remineralization should have overwhelmed any bottom-water and/or pore-water P derived from other sources or biogeochemical processes and exceeded saturation with respect to authigenic P precipitation. It is the first research that identifies the predominance of remineralization pathway against remobilization (coupled Fe-P cycling) pathway in the Chesapeake Bay. Therefore, these results are expected to have significant implications for the current understanding of P cycling and benthic-pelagic coupling in the bay, particularly on the source and pathway of P that sustains hypoxia and supports phytoplankton growth in the surface water.« less

Strong hydrological control on nutrient cycling of subtropical rainforests

NASA Astrophysics Data System (ADS)

Lin, T. C.; Chang, C. T.; Huang, J. C.; Wang, L.; Lin, N. H.

2016-12-01

Forest nutrient cycling is strongly controlled by both biological and hydrological factors. However, based on a close examination of earlier reports, we highlight the role of hydrological control on nutrient cycling at a global scale and is more important at humid tropical and subtropical forests. we analyzed the nutrient budget of precipitation input and stream water output from 1994 to 2013 in a subtropical forest in Taiwan and conducted a data synthesis using results from 32 forests across the globe. The results revealed that monthly input and output of ions were positively correlated with water quantity, indicating hydrological control on nutrient cycling. Hydrological control is also evident from the greater ions export via stream water during the warm and wet growing season. The synthesis also illustrates that strong hydrological control leads to lower nitrogen retention and greater net loss of base cations in humid regions, particularly in the humid tropical and subtropical forests. Our result is of great significance in an era of global climate change because climate change could directly affect ecosystem nutrient cycling particularly in the tropics through changes in patterns of precipitation regime.

A Loblolly Pine Management Guide: Foresters' Primer in Nutrient Cycling

Treesearch

Jacques R. Jorgensen; Carol G. Wells

1986-01-01

The nutrient cycle, which includes the input of nutrients to the site, their losses, and their movement from one soil or vegetation component to another, can be modified by site preparation, rotation length, harvest system, fertilization, and fire, and by using soil-improving plants. Included is a report on how alternative procedures affect site nutrients, and provides...

Plant roots: understanding structure and function in an ocean of complexity

PubMed Central

Ryan, Peter R.; Delhaize, Emmanuel; Watt, Michelle; Richardson, Alan E.

2016-01-01

Background The structure and function of plant roots and their interactions with soil are exciting scientific frontiers that will ultimately reveal much about our natural systems, global water and mineral and carbon cycles, and help secure food supplies into the future. This Special Issue presents a collection of papers that address topics at the forefront of our understanding of root biology. Scope These papers investigate how roots cope with drought, nutrient deficiencies, toxicities and soil compaction as well as the interactions that roots have with soil microorganisms. Roots of model plant species, annual crops and perennial species are studied in short-term experiments through to multi-year trials. Spatial scales range from the gene up to farming systems and nutrient cycling. The diverse, integrated approaches described by these studies encompass root genetics as applied to soil management, as well as documenting the signalling processes occurring between roots and shoots and between roots and soil. Conclusions This Special Issue on roots presents invited reviews and research papers covering a span of topics ranging from fundamental aspects of anatomy, growth and water uptake to roots in crop and pasture systems. Understanding root structure and function and adaptation to the abiotic and biotic stresses encountered in field conditions is important for sustainable agricultural production and better management of natural systems.

Relative abundance and species richness of terrestrial salamanders on hardwood ecosystem experiment sites before harvesting

Treesearch

Jami E. MacNeil; Rod N. Williams

2013-01-01

Terrestrial salamanders are ideal indicators of forest ecosystem integrity due to their abundance, their role in nutrient cycling, and their sensitivity to environmental change. To understand better how terrestrial salamanders are affected by forest management practices, we monitored species diversity and abundance before implementation of timber harvests within the...

Community and ecosystem consequences of Microstegium vimineum invasions in eastern forests

Treesearch

S. Luke. Flory

2011-01-01

Over the past two decades, biological invasions have come to the forefront as a major factor driving global environmental change. Introduced species can reduce biodiversity, inhibit the natural process of succession, and alter ecosystem functions such as nutrient and carbon cycling. There is an urgent need to understand the effects of invasions on native systems in...

Understanding the Red Sea nutrient cycle - a first look into nitrogen fixation in the Red Sea

NASA Astrophysics Data System (ADS)

Mohamed, Roslinda; Arrieta, Jesus; Alam, Intikhab; Duarte, Carlos

2016-04-01

The Red Sea is an elongated and semi-enclosed system bordered by Africa and Saudi Arabia. Positioned in an arid, tropical zone, the system receives high solar irradiance and heat flux, extensive evaporation, low rainfall and therefore high salinity. These harsh environmental conditions has set the Red Sea to be one of the fastest warming and saltiest ecosystem in the world. Although nutrients are known to be at very low concentrations, the ultimately limiting nutrient in the system is still undefined. Therefore, like most other oligotrophic systems, we regard the Red Sea as being nitrogen-limited and we foresee nitrogen fixation as the most probable bottleneck in the Red Sea nitrogen budget. On the basis of metagenomes from pelagic microbial communities along the Red Sea, we looked into the distribution of nitrogenase, an enzyme involved in nitrogen fixation, in this system and provide a first insight into the microbial community that is involved in the process. The implications of this study will not only help improve our understanding of the Red Sea nutrient regime, but may also hint on future ocean responses to rising climates.

Aggregated filter-feeding consumers alter nutrient limitation: consequences for ecosystem and community dynamics.

PubMed

Atkinson, Carla L; Vaughn, Caryn C; Forshay, Kenneth J; Cooper, Joshua T

2013-06-01

Nutrient cycling is a key process linking organisms in ecosystems. This is especially apparent in stream environments in which nutrients are taken up readily and cycled through the system in a downstream trajectory. Ecological stoichiometry predicts that biogeochemical cycles of different elements are interdependent because the organisms that drive these cycles require fixed ratios of nutrients. There is growing recognition that animals play an important role in biogeochemical cycling across ecosystems. In particular, dense aggregations of consumers can create biogeochemical hotspots in aquatic ecosystems via nutrient translocation. We predicted that filter-feeding freshwater mussels, which occur as speciose, high-biomass aggregates, would create biogeochemical hotspots in streams by altering nutrient limitation and algal dynamics. In a field study, we manipulated nitrogen and phosphorus using nutrient-diffusing substrates in areas with high and low mussel abundance, recorded algal growth and community composition, and determined in situ mussel excretion stoichiometry at 18 sites in three rivers (Kiamichi, Little, and Mountain Fork Rivers, south-central United States). Our results indicate that mussels greatly influence ecosystem processes by modifying the nutrients that limit primary productivity. Sites without mussels were N-limited with -26% higher relative abundances of N-fixing blue-green algae, while sites with high mussel densities were co-limited (N and P) and dominated by diatoms. These results corroborated the results of our excretion experiments; our path analysis indicated that mussel excretion has a strong influence on stream water column N:P. Due to the high N:P of mussel excretion, strict N-limitation was alleviated, and the system switched to being co-limited by both N and P. This shows that translocation of nutrients by mussel aggregations is important to nutrient dynamics and algal species composition in these rivers. Our study highlights the importance of consumers and this imperiled faunal group on nutrient cycling and community dynamics in aquatic ecosystems.

Effects of arbuscular mycorrhizal fungi and soil nutrient addition on the growth of Phragmites australis under different drying-rewetting cycles.

PubMed

Liang, Jin-Feng; An, Jing; Gao, Jun-Qin; Zhang, Xiao-Ya; Yu, Fei-Hai

2018-01-01

The frequency of soil drying-rewetting cycles is predicted to increase under future global climate change, and arbuscular mycorrhizal fungi (AMF) are symbiotic with most plants. However, it remains unknown how AMF affect plant growth under different frequencies of soil drying-rewetting cycles. We subjected a clonal wetland plant Phragmites australis to three frequencies of drying-rewetting cycles (1, 2, or 4 cycles), two nutrient treatments (with or without), and two AMF treatments (with or without) for 64 days. AMF promoted the growth of P. australis, especially in the 2 cycles of the drying-rewetting treatment. AMF had a significant positive effect on leaf mass and number of ramets in the 2 cycles of the drying-rewetting treatment with nutrient addition. In the 2 cycles of drying-rewetting treatment without nutrient addition, AMF increased leaf area and decreased belowground to aboveground biomass ratio. These results indicate that AMF may assist P. australis in coping with medium frequency of drying-rewetting cycles, and provide theoretical guidance for predicting how wetland plants respond to future global climate change.

Effect of increased temperature, CO2, and iron on nitrate uptake and primary productivity in the coastal Ross Sea

NASA Astrophysics Data System (ADS)

Bronk, D. A.; Spackeen, J.; Sipler, R. E.; Bertrand, E. M.; Roberts, Q. N.; Xu, K.; Baer, S. E.; McQuaid, J.; Zhu, Z.; Walworth, N. G.; Hutchins, D. A.; Allen, A. E.

2016-02-01

Western Antarctic Seas are rapidly changing as a result of elevated concentrations of CO2 and rising sea surface temperatures. It is critical to determine how the structure and function of microbial communities will be impacted by these changes in the future because the Southern Ocean has seasonally high rates of primary production, is an important sink for anthropogenic CO2, and supports a diverse assemblage of higher trophic level organisms. During the Austral summer of 2013 and 2015, a collaborative research group conducted a series of experiments to understand how the individual and combined effects of temperature, CO2, and iron impact Ross Sea microorganisms. Our project used a variety of approaches, including batch experiments, semi-continuous experiments, and continuous-culturing over extended time intervals, to determine how future changes may shift Ross Sea microbial communities and how nutrient cycling and carbon biogeochemistry may subsequently be altered. Chemical and biological parameters were measured throughout the experiments to assess changes in community composition and nutrient cycling, including uptake rate measurements of nitrate and bicarbonate by different size fractions of microorganisms. Relative to the control, nitrate uptake rates significantly increased when temperature and iron were elevated indicating that temperature and iron are important physical drivers that influence nutrient cycling. Elevations in temperature and iron independently and synergistically produced higher rates than elevated CO2. Our nutrient uptake results also suggest that the physiology of large microorganisms will be more impacted by climate change variables than small microorganisms.

Metaproteogenomics reveals the soil microbial communities active in nutrient cycling processes under different tree species

NASA Astrophysics Data System (ADS)

Keiblinger, Katharina Maria; Masse, Jacynthe; Zühlke, Daniela; Riedel, Katharina; Zechmeister-Boltenstern, Sophie; Prescott, Cindy E.; Grayston, Sue

2016-04-01

Tree species exert strong effects on microbial communities in litter and soil and may alter rates of soil processes fundamental to nutrient cycling and carbon fluxes (Prescott and Grayston 2013). However, the influence of tree species on decomposition processes are still contradictory and poorly understood. An understanding of the mechanisms underlying plant influences on soil processes is important for our ability to predict ecosystem response to altered global/environmental conditions. In order to link microbial community structure and function to forest-floor nutrient cycling processes, we sampled forest floors under western redcedar (Thuja plicata), Douglas-fir (Pseudotsuga menziesii) and Sitka spruce (Picea sitchensis) grown in nutrient-poor sites in common garden experiments on Vancouver island (Canada). We measured forest-floor total N, total C, initial NH4+ and NO3- concentrations, DOC, Cmic and Nmic. Gross rates of ammonification and NH4+ consumption were measured using the 15N pool-dilution method. Organic carbon quality was assessed through FTIR analyses. Microbial community structure was analysed by a metaproteogenomic approach using 16S and ITS amplification and sequencing with MiSeq platform. Proteins were extracted and peptides characterized via LC-MS/MS on a Velos Orbitrap to assess the active microbial community. Different microbial communities were active under the three tree species and variation in process rates were observed and will be discussed. This research provides new insights on microbial processes during organic matter decomposition. The metaproteogenomic approach enables us to investigate these changes with respect to possible effects on soil C-storage at even finer taxonomic resolution.

Biophysical Controls on Carbon Cycling in Restored and Unrestored Urban Streams

NASA Astrophysics Data System (ADS)

Larsen, L. G.; Harvey, J. W.; Singh, J. D.; Sinclair, G. A.; Langston, T.; Maglio, M. M.

2012-12-01

Stream restoration is a multibillion dollar industry, yet how restoration impacts the ecological functioning of streams remains poorly understood. Because stream restoration may alter numerous biophysical controls, including light availability (through tree removal during bank regrading), hydraulics, sediment characteristics, and/or nutrient concentrations, it can be challenging to achieve a general understanding of how different aspects of stream restoration design influence ecosystem function (e.g., carbon cycling). In this study we combined strategies of continuously monitoring hydrology, turbidity, and dissolved oxygen at a station with spatially distributed but temporally sparse synoptic sampling to understand how restoration and land-use impact carbon fixation and respiration in urban streams. The study was performed over three years in three adjacent 3rd-4th order stream reaches in the urban Chesapeake Bay watershed, one of which was restored in 2002 using the ubiquitous Natural Channel Design method. By parsing the dissolved oxygen time series into contributions from respiration and gross primary production, we found the unrestored urban reach to be the most heterotrophic. It removed two times more carbon from the stream to the atmosphere than an unrestored suburban stream that was nutrient impacted and five times more carbon than the restored urban stream. The synoptic sampling revealed that nutrients, light, and hydrodynamic disturbance were the primary controls on carbon fixation and respiration, with fine sediment also exhibiting importance, likely as a vehicle for nutrient transport. Low rates of net carbon removal in the restored stream arose from high light availability resulting in high primary production, combined with low fine sediment availability restricting respiration. Thus, while restoration may have been effective for stream stabilization, it has decreased the functionality of the stream for net carbon removal to the atmosphere. Surprisingly, streambed potential respiration rates were indistinguishable between different geomorphic zones within the streams, suggesting that large-scale factors (i.e., nutrient and fine sediment supply) were more dominant controls than geomorphically controlled local variability.

Monitoring TASCC Injections Using A Field-Ready Wet Chemistry Nutrient Autoanalyzer

NASA Astrophysics Data System (ADS)

Snyder, L. E.; Herstand, M. R.; Bowden, W. B.

2011-12-01

Quantification of nutrient cycling and transport (spiraling) in stream systems is a fundamental component of stream ecology. Additions of isotopic tracer and bulk inorganic nutrient to streams have been frequently used to evaluate nutrient transfer between ecosystem compartments and nutrient uptake estimation, respectively. The Tracer Addition for Spiraling Curve Characterization (TASCC) methodology of Covino et al. (2010) instantaneously and simultaneously adds conservative and biologically active tracers to a stream system to quantify nutrient uptake metrics. In this method, comparing the ratio of mass of nutrient and conservative solute recovered in each sample throughout a breakthrough curve to that of the injectate, a distribution of spiraling metrics is calculated across a range of nutrient concentrations. This distribution across concentrations allows for both a robust estimation of ambient spiraling parameters by regression techniques, and comparison with uptake kinetic models. We tested a unique sampling strategy for TASCC injections in which samples were taken manually throughout the nutrient breakthrough curves while, simultaneously, continuously monitoring with a field-ready wet chemistry autoanalyzer. The autoanalyzer was programmed to measure concentrations of nitrate, phosphate and ammonium at the rate of one measurement per second throughout each experiment. Utilization of an autoanalyzer in the field during the experiment results in the return of several thousand additional nutrient data points when compared with manual sampling. This technique, then, allows for a deeper understanding and more statistically robust estimation of stream nutrient spiraling parameters.

Leaf litter traits of invasive species slow down decomposition compared to Spanish natives: a broad phylogenetic comparison.

PubMed

Godoy, Oscar; Castro-Díez, Pilar; Van Logtestijn, Richard S P; Cornelissen, Johannes H C; Valladares, Fernando

2010-03-01

Leaf traits related to the performance of invasive alien species can influence nutrient cycling through litter decomposition. However, there is no consensus yet about whether there are consistent differences in functional leaf traits between invasive and native species that also manifest themselves through their "after life" effects on litter decomposition. When addressing this question it is important to avoid confounding effects of other plant traits related to early phylogenetic divergences and to understand the mechanism underlying the observed results to predict which invasive species will exert larger effects on nutrient cycling. We compared initial leaf litter traits, and their effect on decomposability as tested in standardized incubations, in 19 invasive-native pairs of co-familial species from Spain. They included 12 woody and seven herbaceous alien species representative of the Spanish invasive flora. The predictive power of leaf litter decomposition rates followed the order: growth form > family > status (invasive vs. native) > leaf type. Within species pairs litter decomposition tended to be slower and more dependent on N and P in invaders than in natives. This difference was likely driven by the higher lignin content of invader leaves. Although our study has the limitation of not representing the natural conditions from each invaded community, it suggests a potential slowing down of the nutrient cycle at ecosystem scale upon invasion.

Greenland's glacial fjords and their role in regional biogeochemical dynamics.

NASA Astrophysics Data System (ADS)

Crosby, J.; Arndt, S.

2017-12-01

Greenland's coastal fjords serve as important pathways that connect the Greenland Ice Sheet (GrIS) and the surrounding oceans. They export seasonal glacial meltwater whilst being significant sites of primary production. These fjords are home to some of the most productive ecosystems in the world and possess high socio-economic value via fisheries. A growing number of studies have proposed the GrIS as an underappreciated yet significant source of nutrients to surrounding oceans. Acting as both transfer routes and sinks for glacial nutrient export, fjords have the potential to act as significant biogeochemical processors, yet remain underexplored. Critically, an understanding of the quantitative contribution of fjords to carbon and nutrient budgets is lacking, with large uncertainties associated with limited availability of field data and the lack of robust upscaling approaches. To close this knowledge gap we developed a coupled 2D physical-biogeochemical model of the Godthåbsfjord system, a sub-Arctic sill fjord in southwest Greenland, to quantitatively assess the impact of nutrients exported from the GrIS on fjord primary productivity and biogeochemical dynamics. Glacial meltwater is found to be a key driver of fjord-scale circulation patterns, whilst tracer simulations reveal the relative nutrient contributions from meltwater-driven upwelling and meltwater export from the GrIS. Hydrodynamic circulation patterns and freshwater transit times are explored to provide a first understanding of the glacier-fjord-ocean continuum, demonstrating the complex pattern of carbon and nutrient cycling at this critical land-ocean interface.

Regional scale patterns of fine root lifespan and turnover under current and future climate

Treesearch

M. Luke McCormack; David M. Eissenstat; Anantha M. Prasad; Erica A. Smithwick

2013-01-01

Fine root dynamics control a dominant flux of carbon from plants and into soils and mediate potential uptake and cycling of nutrients and water in terrestrial ecosystems. Understanding of these patterns is needed to accurately describe critical processes like productivity and carbon storage from ecosystem to global scales. However, limited observations of root dynamics...

Comparisons with results from the Hubbard Brook Experimental Forest in the Northern Appalachians

Treesearch

James Hornbeck; Amey S. Bailey; Christopher Eagar; John L. Campbell

2014-01-01

The Hubbard Brook Experimental Forest (HBEF) is located in central New Hampshire, in the heart of the White Mountains, toward the northern end of the Appalachian chain. HBEF was established in 1955, two decades after Coweeta Hydrologic Laboratory (CHL), but research objectives at both sites have long been similar, that is, to understand hydrologic and nutrient cycling...

Impacts Of Long-Term Prescribed Fire On Decomposition And Litter Quality In Uneven-Aged Loblolly Pine Stands

Treesearch

Michele L. Renschin; Hal O. Liechty; Michael G. Shelton

2002-01-01

Abstract - Although fire has long been an important forest management tool in the southern United States, little is known concerning the effects of long-term fire use on nutrient cycling and decomposition. To better understand the effects of fire on these processes, decomposition rates, and foliage litter quality were quantified in a study...

Studying the role of wood-decay fungi in calcium cycling on the Penobscot Experimental Forest: a progress report

Treesearch

Walter C. Shortle; Jody Jellison; Kevin T. Smith; Jonathan S. Schilling

2014-01-01

Depletion of essential mineral nutrients from the rooting zone of trees in northern forests may reduce health and productivity. Long-term field investigations coupled with detailed laboratory studies enhance understanding of the biological processes and suggest means to address potential threats. One such investigation by the U.S. Department of Agriculture, Forest...

Groundwater availability mediates the ecosystem effects of an invasion of Prosopis pallida

Treesearch

Bruce D. Dudley; Flint Hughes; Rebecca Ostertag

2014-01-01

Groundwater levels in arid environments are dropping worldwide due to human extraction, and precipitation events are predicted to become rarer and more intense in many arid areas with global climate change. These changes will likely alter both primary productivity and plant–soil nutrient cycles. To better understand the nature of such alterations, we examined effects...

Diel biogeochemical processes and their effect on the aqueous chemistry of streams: A review

USGS Publications Warehouse

Nimick, David A.; Gammons, Christopher H.; Parker, Stephen R.

2011-01-01

This review summarizes biogeochemical processes that operate on diel, or 24-h, time scales in streams and the changes in aqueous chemistry that are associated with these processes. Some biogeochemical processes, such as those producing diel cycles of dissolved O2 and pH, were the first to be studied, whereas processes producing diel concentration cycles of a broader spectrum of chemical species including dissolved gases, dissolved inorganic and organic carbon, trace elements, nutrients, stable isotopes, and suspended particles have received attention only more recently. Diel biogeochemical cycles are interrelated because the cyclical variations produced by one biogeochemical process commonly affect another. Thus, understanding biogeochemical cycling is essential not only for guiding collection and interpretation of water-quality data but also for geochemical and ecological studies of streams. Expanded knowledge of diel biogeochemical cycling will improve understanding of how natural aquatic environments function and thus lead to better predictions of how stream ecosystems might react to changing conditions of contaminant loading, eutrophication, climate change, drought, industrialization, development, and other factors.

River Metabolism and Nutrient Cycling at the Point Scale: Insights from In Situ Sensors in Benthic Chambers

NASA Astrophysics Data System (ADS)

Cohen, M. J.; Reijo, C. J.; Hensley, R. T.

2017-12-01

Riverine processing of nutrients and carbon is a local process, subject to heterogeneity in sediment, biotic, insolation, and flow velocity drivers. Measurements at the reach scale aggregate across riverscapes, limiting their utility for enumerating these drivers, and thus for scaling to river networks. Using a combination of in situ sensors that sample water chemistry at high temporal resolution and open benthic chambers that isolate the biogeochemical impacts of a small footprint of benthic surface area, we explored controls on metabolism and nutrient cycling. We specifically sought to answer two questions. First, what are the controls on primary production, with a particular emphasis on the relative roles of light vs. nutrient limitation? Second, what are the pathways of nutrient retention, and do the reaction kinetics of these different pathways differ? We demonstrate the considerable utility of these benthic chambers, reasoning that they provide experimental units for river processes that are not attainable at the reach or network scale. Specifically, in addition to their ability to sample the heterogeneity of the river bed as well as observe nutrient depletion to create concentrations well below ambient levels, they enable manipulative experiments (e.g., nutrient enrichment, light reduction, grazer adjustments) while retaining key elements of the natural system. Across several of Florida's spring-fed river sites, our results strongly support the primacy of light limitation of primary production, with very little evidence of any incremental effects of nutrient enrichment. Nutrient depletion assays further support the dominance of two N retention mechanisms (denitrification and assimilation), the kinetics of which differ markedly, with denitrification exhibiting nearly first-order reactions, and assimilation following zero-order or Michaelis-Menten kinetics over the range of observed concentrations. This latter result helps explain the absence of strong nutrient enrichment effects (i.e., zero-order kinetics imply nutrient saturation), and offers novel insights into the benthic conditions that control both rates and kinetics. The capacity to measure processes at the point scale, and effectively scale to the reach, opens new doors for understanding aquatic ecosystem biogeochemistry.

Muscle Contraction and Force: the Importance of an Ancillary Network, Nutrient Supply and Waste Removal

PubMed Central

Brüggemann, Dagmar A.; Risbo, Jens; Pierzynowski, Stefan G.; Harrison, Adrian P.

2008-01-01

Muscle contraction studies often focus solely on myofibres and the proteins known to be involved in the processes of sarcomere shortening and cross-bridge cycling, but skeletal muscle also comprises a very elaborate ancillary network of capillaries, which not only play a vital role in terms of nutrient delivery and waste product removal, but are also tethered to surrounding fibres by collagen ”wires”. This paper therefore addresses aspects of the ancillary network of skeletal muscle at both a microscopic and functional level in order to better understand its role holistically as a considerable contributor to force transfer within muscular tissue. PMID:19325816

Ecological life histories of the three aquatic nuisance plants, Myriophyllum spicatum, Potamogeton crispus and Elodea canadensis

USGS Publications Warehouse

Nichols, S.A.; Shaw, B.H.

1986-01-01

The life histories of Myriophyllum spicatum L., Elodea canadensis Michx., and Potamogeton crispus L., serious aquatic nuisances in many regions of the world, are reviewed to provide insights into the life style of successful aquatic nuisance plants. Specifically, their distribution and spread in North America; their life cycle, productive and reproductive potential; and their ecosystem relationships are reviewed. Hopefully this review will improve a manager's ability to deal with aquatic nuisance problems. It also provides suggestions for basic research needed to develop more effective management practices. It was found that all three species possess a number of adaptations, including an ability to rapidly propagate vegetatively, an opportunistic nature for obtaining nutrients, a life cycle that favors cool weather, and a number of mechanisms which enhance photosynthetic efficiency, which allow them to proliferate. These three species do provide benefits to the ecosystem through their roles in materials cycling and energy flow. Therefore, management of these species should take an integrated approach which recognizes these benefits. The life history information available about the three species varies tremendously; however, a better understanding of resource gain and allocation is needed to manage all three species. Specifically, more research is needed to provide a better understanding of: 1) the role bicarbonate plays in photosynthesis, 2) the role roots play in supplying CO2 to the plabts, 3) resource accumulation and allocation under different temperature and light regimes, 4) resource allocation on a seasonal basis, and 5) nutrient cycling under different management regimes. ?? 1986 Dr W. Junk Publishers.

Mineral Types and Tree Species Determine the Functional and Taxonomic Structures of Forest Soil Bacterial Communities.

PubMed

Colin, Y; Nicolitch, O; Turpault, M-P; Uroz, S

2017-03-01

Although minerals represent important soil constituents, their impact on the diversity and structure of soil microbial communities remains poorly documented. In this study, pure mineral particles with various chemistries (i.e., obsidian, apatite, and calcite) were considered. Each mineral type was conditioned in mesh bags and incubated in soil below different tree stands (beech, coppice with standards, and Corsican pine) for 2.5 years to determine the relative impacts of mineralogy and mineral weatherability on the taxonomic and functional diversities of mineral-associated bacterial communities. After this incubation period, the minerals and the surrounding bulk soil were collected to determine mass loss and to perform soil analyses, enzymatic assays, and cultivation-dependent and -independent analyses. Notably, our 16S rRNA gene pyrosequencing analyses revealed that after the 2.5-year incubation period, the mineral-associated bacterial communities strongly differed from those of the surrounding bulk soil for all tree stands considered. When focusing only on minerals, our analyses showed that the bacterial communities associated with calcite, the less recalcitrant mineral type, significantly differed from those that colonized obsidian and apatite minerals. The cultivation-dependent analysis revealed significantly higher abundances of effective mineral-weathering bacteria on the most recalcitrant minerals (i.e., apatite and obsidian). Together, our data showed an enrichment of Betaproteobacteria and effective mineral-weathering bacteria related to the Burkholderia and Collimonas genera on the minerals, suggesting a key role for these taxa in mineral weathering and nutrient cycling in nutrient-poor forest ecosystems. IMPORTANCE Forests are usually developed on nutrient-poor and rocky soils, while nutrient-rich soils have been dedicated to agriculture. In this context, nutrient recycling and nutrient access are key processes in such environments. Deciphering how soil mineralogy influences the diversity, structure, and function of soil bacterial communities in relation to the soil conditions is crucial to better understanding the relative role of the soil bacterial communities in nutrient cycling and plant nutrition in nutrient-poor environments. The present study determined in detail the diversity and structure of bacterial communities associated with different mineral types incubated for 2.5 years in the soil under different tree species using cultivation-dependent and -independent analyses. Our data showed an enrichment of specific bacterial taxa on the minerals, specifically on the most weathered minerals, suggesting that they play key roles in mineral weathering and nutrient cycling in nutrient-poor forest ecosystems. Copyright © 2017 American Society for Microbiology.

Mineral Types and Tree Species Determine the Functional and Taxonomic Structures of Forest Soil Bacterial Communities

PubMed Central

Colin, Y.; Nicolitch, O.; Turpault, M.-P.

2016-01-01

ABSTRACT Although minerals represent important soil constituents, their impact on the diversity and structure of soil microbial communities remains poorly documented. In this study, pure mineral particles with various chemistries (i.e., obsidian, apatite, and calcite) were considered. Each mineral type was conditioned in mesh bags and incubated in soil below different tree stands (beech, coppice with standards, and Corsican pine) for 2.5 years to determine the relative impacts of mineralogy and mineral weatherability on the taxonomic and functional diversities of mineral-associated bacterial communities. After this incubation period, the minerals and the surrounding bulk soil were collected to determine mass loss and to perform soil analyses, enzymatic assays, and cultivation-dependent and -independent analyses. Notably, our 16S rRNA gene pyrosequencing analyses revealed that after the 2.5-year incubation period, the mineral-associated bacterial communities strongly differed from those of the surrounding bulk soil for all tree stands considered. When focusing only on minerals, our analyses showed that the bacterial communities associated with calcite, the less recalcitrant mineral type, significantly differed from those that colonized obsidian and apatite minerals. The cultivation-dependent analysis revealed significantly higher abundances of effective mineral-weathering bacteria on the most recalcitrant minerals (i.e., apatite and obsidian). Together, our data showed an enrichment of Betaproteobacteria and effective mineral-weathering bacteria related to the Burkholderia and Collimonas genera on the minerals, suggesting a key role for these taxa in mineral weathering and nutrient cycling in nutrient-poor forest ecosystems. IMPORTANCE Forests are usually developed on nutrient-poor and rocky soils, while nutrient-rich soils have been dedicated to agriculture. In this context, nutrient recycling and nutrient access are key processes in such environments. Deciphering how soil mineralogy influences the diversity, structure, and function of soil bacterial communities in relation to the soil conditions is crucial to better understanding the relative role of the soil bacterial communities in nutrient cycling and plant nutrition in nutrient-poor environments. The present study determined in detail the diversity and structure of bacterial communities associated with different mineral types incubated for 2.5 years in the soil under different tree species using cultivation-dependent and -independent analyses. Our data showed an enrichment of specific bacterial taxa on the minerals, specifically on the most weathered minerals, suggesting that they play key roles in mineral weathering and nutrient cycling in nutrient-poor forest ecosystems. PMID:28003192

A critical assessment of the ecological assumptions underpinning compensatory mitigation of salmon-derived nutrients

USGS Publications Warehouse

Collins, Scott F.; Marcarelli, Amy M.; Baxter, Colden V.; Wipfli, Mark S.

2015-01-01

We critically evaluate some of the key ecological assumptions underpinning the use of nutrient replacement as a means of recovering salmon populations and a range of other organisms thought to be linked to productive salmon runs. These assumptions include: (1) nutrient mitigation mimics the ecological roles of salmon, (2) mitigation is needed to replace salmon-derived nutrients and stimulate primary and invertebrate production in streams, and (3) food resources in rearing habitats limit populations of salmon and resident fishes. First, we call into question assumption one because an array of evidence points to the multi-faceted role played by spawning salmon, including disturbance via redd-building, nutrient recycling by live fish, and consumption by terrestrial consumers. Second, we show that assumption two may require qualification based upon a more complete understanding of nutrient cycling and productivity in streams. Third, we evaluate the empirical evidence supporting food limitation of fish populations and conclude it has been only weakly tested. On the basis of this assessment, we urge caution in the application of nutrient mitigation as a management tool. Although applications of nutrients and other materials intended to mitigate for lost or diminished runs of Pacific salmon may trigger ecological responses within treated ecosystems, contributions of these activities toward actual mitigation may be limited.

Marine phytoplankton stoichiometry mediates nonlinear interactions between nutrient supply, temperature, and atmospheric CO2

NASA Astrophysics Data System (ADS)

Moreno, Allison R.; Hagstrom, George I.; Primeau, Francois W.; Levin, Simon A.; Martiny, Adam C.

2018-05-01

Marine phytoplankton stoichiometry links nutrient supply to marine carbon export. Deviations of phytoplankton stoichiometry from Redfield proportions (106C : 1P) could therefore have a significant impact on carbon cycling, and understanding which environmental factors drive these deviations may reveal new mechanisms regulating the carbon cycle. To explore the links between environmental conditions, stoichiometry, and carbon cycling, we compared four different models of phytoplankton C : P: a fixed Redfield model, a model with C : P given as a function of surface phosphorus concentration (P), a model with C P given as a function of temperature, and a new multi-environmental model that predicts C : P as a function of light, temperature, and P. These stoichiometric models were embedded into a five-box ocean circulation model, which resolves the three major ocean biomes (high-latitude, subtropical gyres, and tropical upwelling regions). Contrary to the expectation of a monotonic relationship between surface nutrient drawdown and carbon export, we found that lateral nutrient transport from lower C : P tropical waters to high C : P subtropical waters could cause carbon export to decrease with increased tropical nutrient utilization. It has been hypothesized that a positive feedback between temperature and pCO2, atm will play an important role in anthropogenic climate change, with changes in the biological pump playing at most a secondary role. Here we show that environmentally driven shifts in stoichiometry make the biological pump more influential, and may reverse the expected positive relationship between temperature and pCO2, atm. In the temperature-only model, changes in tropical temperature have more impact on the Δ pCO2, atm (˜ 41 ppm) compared to subtropical temperature changes (˜ 4.5 ppm). Our multi-environmental model predicted a decline in pCO2, atm of ˜ 46 ppm when temperature spanned a change of 10 °C. Thus, we find that variation in marine phytoplankton stoichiometry and its environmental controlling factors can lead to nonlinear controls on pCO2, atm, suggesting the need for further studies of ocean C : P and the impact on ocean carbon cycling.

The role of the Everglades Mangrove Ecotone Region (EMER) in regulating nutrient cycling and wetland productivity in South Florida

USGS Publications Warehouse

Rivera-Monroy, Victor H.; Twilley, Robert R.; Davis, Stephen E.; Childers, Daniel L.; Simard, Marc; Chambers, Randolph; Jaffe, Rudolf; Boyer, Joseph N.; Rudnick, David T.; Zhang, Keqi; Castañeda-Moya, Edward; Ewe, Sharon M.L.; Price, Rene M.; Coronado-Molina, Carlos; Ross, Michael; Smith, Thomas J.; Michot, Beatrice; Meselhe, Ehab; Nuttle, William; Troxler, Tiffany G.; Noe, Gregory B.

2011-01-01

The authors summarize the main findings of the Florida Coastal Everglades Long-Term Ecological Research (FCE-LTER) program in the EMER, within the context of the Comprehensive Everglades Restoration Plan (CERP), to understand how regional processes, mediated by water flow, control population and ecosystem dynamics across the EMER landscape. Tree canopies with maximum height -1) in the calcareous marl substrate and long hydroperiod. Phosphorus limits the EMER and its freshwater watersheds due to the lack of terrigenous sediment input and the phosphorus-limited nature of the freshwater Everglades. Reduced freshwater delivery over the past 50 years, combined with Everglades compartmentalization and a 10 cm rise in coastal sea level, has led to the landward transgression (~1.5 km in 54 years) of the mangrove ecotone. Seasonal variation in freshwater input strongly controls the temporal variation of nitrogen and P exports (99%) from the Everglades to Florida Bay. Rapid changes in nutrient availability and vegetation distribution during the last 50 years show that future ecosystem restoration actions and land use decisions can exert a major influence, similar to sea level rise over the short term, on nutrient cycling and wetland productivity in the EMER.

Nitrogen and phosphorus in the Upper Mississippi River: Transport, processing, and effects on the river ecosystem

USGS Publications Warehouse

Houser, J.N.; Richardson, W.B.

2010-01-01

Existing research on nutrients (nitrogen and phosphorus) in the Upper Mississippi River (UMR) can be organized into the following categories: (1) Long-term changes in nutrient concentrations and export, and their causes; (2) Nutrient cycling within the river; (3) Spatial and temporal patterns of river nutrient concentrations; (4) Effects of elevated nutrient concentrations on the river; and (5) Actions to reduce river nutrient concentrations and flux. Nutrient concentration and flux in the Mississippi River have increased substantially over the last century because of changes in land use, climate, hydrology, and river management and engineering. As in other large floodplain rivers, rates of processes that cycle nitrogen and phosphorus in the UMR exhibit pronounced spatial and temporal heterogeneity because of the complex morphology of the river. This spatial variability in nutrient processing creates clear spatial patterns in nutrient concentrations. For example, nitrate concentrations generally are much lower in off-channel areas than in the main channel. The specifics of in-river nutrient cycling and the effects of high rates of nutrient input on UMR have been less studied than the factors affecting nutrient input to the river and transport to the Gulf of Mexico, and important questions concerning nutrient cycling in the UMR remain. Eutrophication and resulting changes in river productivity have only recently been investigated the UMR. These recent studies indicate that the high nutrient concentrations in the river may affect community composition of aquatic vegetation (e. g., the abundance of filamentous algae and duckweeds), dissolved oxygen concentrations in off-channel areas, and the abundance of cyanobacteria. Actions to reduce nutrient input to the river include changes in land-use practices, wetland restoration, and hydrological modifications to the river. Evidence suggests that most of the above methods can contribute to reducing nutrient concentration in, and transport by, the UMR, but the impacts of mitigation efforts will likely be only slowly realized. ?? USGS, US Government 2010.

Nutrient cycling in an agroforestry alley cropping system receiving poultry litter or nitrogen fertilizer

USDA-ARS?s Scientific Manuscript database

Optimal utilization of animal manures as a plant nutrient source should also prevent adverse impacts on water quality. The objective of this study was to evaluate long-term poultry litter and N fertilizer application on nutrient cycling following establishment of an alley cropping system with easter...

Measuring Nitrification: A Laboratory Approach to Nutrient Cycling.

ERIC Educational Resources Information Center

Hicks, David J.

1990-01-01

Presented is an approach to the study of nutrient cycling in the school laboratory. Discussed are obtaining, processing, and incubating samples; extraction of ions from soil; procedures for nitrate and ammonium analysis; data analysis; an example of results; and other aspects of the nitrogen cycle. (CW)

The significance of GW-SW interactions for biogeochemical processes in sandy streambeds

NASA Astrophysics Data System (ADS)

Arnon, Shai; De Falco, Natalie; Fox, Aryeh; Laube, Gerrit; Schmidt, Christian; Fleckenstein, Jan; Boano, Fulvio

2015-04-01

Stream-groundwater interactions have a major impact on hyporheic exchange fluxes in sandy streambeds. However, the physical complexity of natural streams has limited our ability to study these types of interactions systematically, and to evaluate their importance to biogeochemical processes and nutrient cycling. In this work we were able to quantify the effect of losing and gaining fluxes on hyporheic exchange and nutrient cycling in homogeneous and heterogeneous streambeds by combining experiments in laboratory flumes and modeling. Tracer experiments for measuring hyporheic exchange were done using dyes and NaCl under various combinations of overlying water velocity and losing or gaining fluxes. Nutrient cycling experiments were conducted after growing a benthic biofilm by spiking with Sodium Benzoate (as a source of labile dissolved organic carbon, DOC) and measuring DOC and oxygen dynamics. The combination of experimental observations and modeling revealed that interfacial transport increases with the streambed hydraulic conductivity and proportional to the square of the overlying water velocity. Hyporheic exchange fluxes under losing and gaining flow conditions were similar, and became smaller when the losing or gaining flux increases. Increasing in streambed hydraulic conductivity led to higher hyporheic fluxes and reduction in the effects of losing and gaining flow conditions to constrain exchange. Despite the evident effect of flow conditions on hyporheic exchange, labile DOC uptake was positively linked to increasing overlying water velocity but was not affected by losing and gaining fluxes. This is because microbial aerobic activity was taking place at the upper few millimeters of the streambed as shown by local oxygen consumption rates, which was measured using microelectrodes. Based on modeling work, it is expected that GW-SW interaction will be more significant for less labile DOC and anaerobic processes. Our results enable us to study systematically the coupling between flow conditions and biogeochemical processes under highly controlled physical and chemical conditions and are expected to improve our understanding of nutrient cycling in streams.

Agricultural Nutrient Cycling at the Strawberry Creek Watershed: Insights Into Processes Using Stable Isotope Analysis

NASA Astrophysics Data System (ADS)

Thuss, E.; English, M. C.; Spoelstra, J.

2009-05-01

When nitrogen availability exceeds biological demand, excess nitrogen, especially nitrate, may subsequently pollute ground and surface water. Agricultural practices in Southern Ontario typically supplement soils with organic and inorganic nutrients to aid in crop development, and employ various management techniques to limit nutrient loss. Excess nitrogen has several potential fates, which are controlled by the net effects of numerous nitrogen cycling reactions in the soil that are often difficult to measure directly. Nitrogen cycling in soils is controlled in large part by soil moisture, as it affects microbial activity and soil redox conditions. Stable isotope geochemistry is a powerful tool that provides information on nitrogen sources and processes. This study uses crop nitrogen and carbon isotope ratios to provide insights into the net effects of soil nitrogen cycling and nitrogen fate. This research was conducted at the Strawberry Creek Watershed (SCW), an agricultural research watershed located between Kitchener-Waterloo and Guelph, Ontario. The SCW exhibits elevated nitrate concentrations in groundwater, tile discharge, and the stream itself. Previous isotopic work revealed that this nitrate is largely derived from chemical fertilizer and manure applications. Field-scale hydrological processes lead to areas where the fate of applied nitrogen differs, which has an isotopic effect on the residual nitrogen that is available to plants. Results of this study indicate significant patterns in the isotopic signature of plant tissue, in both temporal and spatial scales. At the plot-scale where soil conditions are similar, there is little to no variation in foliar isotope values, but at the field-scale there appears to be a significant amount of variability related to soil moisture and nitrogen loss. This relationship can potentially provide insight into ideal conditions for nitrogen uptake efficiency. Reducing agricultural nitrogen leaching to ground and surface water requires a better understanding of nitrogen fate in the soil zone, and will result in more effective agricultural nutrient management.

How Hydrodynamics Control Algal Blooms in the Ythan Estuary, Scotland

NASA Astrophysics Data System (ADS)

Champangern, K.; Hoey, T.; Thomas, R.; Mitchard, E. T.

2016-12-01

The Ythan estuary, northeast Scotland, was designated in 2000 as a Nitrate Vulnerable Zone (NVZ) under the European Commission (EC) Nitrates Directive. Much of the catchment is intensively farmed and water quality has been adversely affected by nutrients from agricultural fertilisers. As a result, algal mats develop annually on tidal flats where sediment from upstream and from the adjacent dune systems is deposited. Understanding the patterns of water (river and ocean) circulation in the estuary as well as nutrient transport in the estuary is crucial for comprehending the role of several factors (elevation; sediment characteristics; nutrient flux) control the locations and scale of annual algal blooms. To understand the controls, the Delft3d flow model is used to simulate hydrodynamic patterns and nutrient pathways in the estuary during high flow and low flow events. The results from the simulations reveal that during high river flow in the central part of the estuary, where algal growth is most extensive, flow velocity are higher during flood tide than in the ebb. However, the velocity in this area remain very low throughout the tidal cycle. During low river flow, the velocity during one tidal cycle has the same pattern as in high flow event, although the velocity is generally slightly higher than during high river flow except during slack tide where velocity and shear stress are lower. The modelled nutrient pathways and their concentration also show the movement of nutrients with regard to interaction of both fresh and sea water. The concentration is greatest during low tide in the upper estuary followed by middle and lower estuary, while appearing lowest during high tide. The nutrients mobilise along the main channel where velocity is greater. However, they are also dispersed to shallower areas where algal growth is extensive and remain high concentrated in the areas until a new flood tide. These model results are validated against measured data, of which the validation results illustrate a good agreement with the measured data. Moreover, these results are clearly consistent with areas where extensive algal growth occurs in upper and middle estuary derived from satellite image classification. This study suggests that hydrodynamics strongly controls over persistence of algal formation in location and extent.

Soil quality succession of mudflat in coastal area of China under different types of man-made land uses

NASA Astrophysics Data System (ADS)

Lu, Haiying; Shao, Hongbo; Xu, Zhaolong; Peng, Cheng

2017-04-01

Marshy reclamation in coastal area is becoming an important strategy for food safety security and economic development in China. After the reclamation of mudflat, the nutrient concentration in soil is one of the dominated factors restricting the development of marshy agriculture. However, little information is available for soil nutrient dynamics and its driving mechanisms under different types of man-made land uses. In this review, we summarized the soil nutrient dynamics under different types of man-made land uses (bare mudflat soil, rice-wheat rotation soil, aquaculture soil, and forest soil), including the change of physical and chemical features of the reclaimed soil; ii) the dynamics of soil organic matters and its driving mechanism in marshy land; iii) the migration of N, P, and K in marshy soil; and iv) the oriented cultivation and improvement for soil nutrient in marshy soil. This study contributes not only to understanding the soil nutrient cycling in marshy land, but also to providing valuable information for the sustainable development of salt-soil agriculture in marshy land along seaside cities of China.

NPKS uptake, sensing, and signaling and miRNAs in plant nutrient stress.

PubMed

Nath, Manoj; Tuteja, Narendra

2016-05-01

Sessile nature of higher plants consequently makes it highly adaptable for nutrient absorption and acquisition from soil. Plants require 17 essential elements for their growth and development which include 14 minerals (macronutrients: N, P, K, Mg, Ca, S; micronutrients: Cl, Fe, B, Mn, Zn, Cu, Ni, Mo) and 3 non-mineral (C, H, O) elements. The roots of higher plants must acquire these macronutrients and micronutrients from rhizosphere and further allocate to other plant parts for completing their life cycle. Plants evolved an intricate series of signaling and sensing cascades to maintain nutrient homeostasis and to cope with nutrient stress/availability. The specific receptors for nutrients in root, root system architecture, and internal signaling pathways help to develop plasticity in response to the nutrient starvation. Nitrogen (N), phosphorus (P), potassium (K), and sulfur (S) are essential for various metabolic processes, and their deficiency negatively effects the plant growth and yield. Genes coding for transporters and receptors for nutrients as well as some small non-coding RNAs have been implicated in nutrient uptake and signaling. This review summarizes the N, P, K, and S uptake, sensing and signaling events in nutrient stress condition especially in model plant Arabidopsis thaliana and involvement of microRNAs in nutrient deficiency. This article also provides a framework of uptake, sensing, signaling and to highlight the microRNA as an emerging major players in nutrient stress condition. Nutrient-plant-miRNA cross talk may help plant to cope up nutrient stress, and understanding their precise mechanism(s) will be necessary to develop high yielding smart crop with low nutrient input.

The stoichiometry of nutrient release by terrestrial herbivores and its ecosystem consequences

NASA Astrophysics Data System (ADS)

Sitters, Judith; Bakker, Elisabeth S.; Veldhuis, Michiel P.; Veen, G. F.; Olde Venterink, Harry; Vanni, Michael J.

2017-04-01

It is widely recognized that the release of nutrients by herbivores via their waste products strongly impacts nutrient availability for autotrophs. The ratios of nitrogen (N) and phosphorus (P) recycled through herbivore release (i.e., waste N:P) are mainly determined by the stoichiometric composition of the herbivore’s food (food N:P) and its body nutrient content (body N:P). Waste N:P can in turn impact autotroph nutrient limitation and productivity. Herbivore-driven nutrient recycling based on stoichiometric principles is dominated by theoretical and experimental research in freshwater systems, in particular interactions between algae and invertebrate herbivores. In terrestrial ecosystems, the impact of herbivores on nutrient cycling and availability is often limited to studying carbon (C ):N and C:P ratios, while the role of terrestrial herbivores in mediating N:P ratios is also likely to influence herbivore-driven nutrient recycling. In this review, we use rules and predictions on the stoichiometry of nutrient release originating from algal-based aquatic systems to identify the factors that determine the stoichiometry of nutrient release by herbivores. We then explore how these rules can be used to understand the stoichiometry of nutrient release by terrestrial herbivores, ranging from invertebrates to mammals, and its impact on plant nutrient limitation and productivity. Future studies should focus on measuring both N and P when investigating herbivore-driven nutrient recycling in terrestrial ecosystems, while also taking the form of waste product (urine or feces) and other pathways by which herbivores change nutrients into account, to be able to quantify the impact of waste stoichiometry on plant communities.

Using coral Ba/Ca records to investigate seasonal to decadal scale biogeochemical cycling in the surface and intermediate ocean.

NASA Astrophysics Data System (ADS)

LaVigne, M.; Cobb, K. M.; DeLong, K. L.; Freiberger, M. M.; Grottoli, A. G.; Hill, T. M.; Miller, H. R.; Nurhati, I. S.; Richey, J. N.; Serrato Marks, G.; Sherrell, R. M.

2016-12-01

Dissolved barium (BaSW), a bio-intermediate element, is linked to several biogeochemical processes such as the cycling and export of nutrients, organic carbon (Corg), and barite in surface and intermediate oceans. Dynamic BaSW cycling has been demonstrated in the water column on short timescales (days-weeks) while sedimentary records have documented geologic-scale changes in barite preservation driven by export production. Our understanding of how seasonal-decadal scale climate variability impacts these biogeochemical processes currently lacks robust records. Ba/Ca calibrations in surface and deep sea corals suggest barium is incorporated via cationic substitution in both aragonite and calcite. Here we demonstrate the utility of Ba/Ca for reconstructing biogeochemical variability using examples of surface and deep sea coral records. Century-long deep sea coral records from the California Current System (bamboo corals: 900-1500m) record interannual variations in Ba/Ca, likely reflecting changes in barite formation via bacterial Corg respiration or barite saturation state. A surface Porites coral Ba/Ca record from Christmas Island (central equatorial Pacific: 1978-1995) shows maxima during low productivity El Niño warm periods, suggesting that variations in BaSW are driven by biological removal via direct cellular uptake or indirectly via barite precipitation with the decomposition of large phytoplankton blooms at this location. Similarly, a sixteen-year long Siderastera siderea surface coral record from Dry Tortugas, FL (Gulf of Mexico: 1991-2007) shows seasonal Ba/Ca cycles that align with annual chlorophyll and δ13C. Taken together, these records demonstrate the linkages among Corg, nutrient cycling and BaSW in the surface and intermediate ocean on seasonal to decadal timescales. Multi-proxy paleoceanographic reconstructions including Ba/Ca have the potential to elucidate the mechanisms linking past climate, productivity, nutrients, and BaSW cycling in the past.

Emiliania huxleyi endures N-limitation with an efficient metabolic budgeting and effective ATP synthesis.

PubMed

Rokitta, Sebastian D; Von Dassow, Peter; Rost, Björn; John, Uwe

2014-12-02

Global change will affect patterns of nutrient upwelling in marine environments, potentially becoming even stricter regulators of phytoplankton primary productivity. To better understand phytoplankton nutrient utilization on the subcellular basis, we assessed the transcriptomic responses of the life-cycle stages of the biogeochemically important microalgae Emiliania huxleyi to nitrogen-limitation. Cells grown in batch cultures were harvested at 'early' and 'full' nitrogen-limitation and were compared with non-limited cells. We applied microarray-based transcriptome profilings, covering ~10.000 known E. huxleyi gene models, and screened for expression patterns that indicate the subcellular responses. The diploid life-cycle stage scavenges nitrogen from external organic sources and -like diatoms- uses the ornithine-urea cycle to rapidly turn over cellular nitrogen. The haploid stage reacts similarly, although nitrogen scavenging is less pronounced and lipid oxidation is more prominent. Generally, polyamines and proline appear to constitute major organic pools that back up cellular nitrogen. Both stages induce a malate:quinone-oxidoreductase that efficiently feeds electrons into the respiratory chain and drives ATP generation with reduced respiratory carbon throughput. The use of the ornithine-urea cycle to budget the cellular nitrogen in situations of limitation resembles the responses observed earlier in diatoms. This suggests that underlying biochemical mechanisms are conserved among distant clades of marine phototrophic protists. The ornithine-urea cycle and proline oxidation appear to constitute a sensory-regulatory system that monitors and controls cellular nitrogen budgets under limitation. The similarity between the responses of the life-cycle stages, despite the usage of different genes, also indicates a strong functional consistency in the responses to nitrogen-limitation that appears to be owed to biochemical requirements. The malate:quinone-oxidoreductase is a genomic feature that appears to be absent from diatom genomes, and it is likely to strongly contribute to the uniquely high endurance of E. huxleyi under nutrient limitation.

Decoupling of microbial carbon, nitrogen, and phosphorus cycling in response to extreme temperature events

PubMed Central

Mooshammer, Maria; Hofhansl, Florian; Frank, Alexander H.; Wanek, Wolfgang; Hämmerle, Ieda; Leitner, Sonja; Schnecker, Jörg; Wild, Birgit; Watzka, Margarete; Keiblinger, Katharina M.; Zechmeister-Boltenstern, Sophie; Richter, Andreas

2017-01-01

Predicted changes in the intensity and frequency of climate extremes urge a better mechanistic understanding of the stress response of microbially mediated carbon (C) and nutrient cycling processes. We analyzed the resistance and resilience of microbial C, nitrogen (N), and phosphorus (P) cycling processes and microbial community composition in decomposing plant litter to transient, but severe, temperature disturbances, namely, freeze-thaw and heat. Disturbances led temporarily to a more rapid cycling of C and N but caused a down-regulation of P cycling. In contrast to the fast recovery of the initially stimulated C and N processes, we found a slow recovery of P mineralization rates, which was not accompanied by significant changes in community composition. The functional and structural responses to the two distinct temperature disturbances were markedly similar, suggesting that direct negative physical effects and costs associated with the stress response were comparable. Moreover, the stress response of extracellular enzyme activities, but not that of intracellular microbial processes (for example, respiration or N mineralization), was dependent on the nutrient content of the resource through its effect on microbial physiology and community composition. Our laboratory study provides novel insights into the mechanisms of microbial functional stress responses that can serve as a basis for field studies and, in particular, illustrates the need for a closer integration of microbial C-N-P interactions into climate extremes research. PMID:28508070

The relative importance of light and nutrient limitation of phytoplankton growth: A simple index of coastal ecosystem sensitivity to nutrient enrichment

USGS Publications Warehouse

Cloern, J.E.

1999-01-01

Anthropogenic nutrient enrichment of the coastal zone is now a well-established fact. However, there is still uncertainty about the mechanisms through which nutrient enrichment can disrupt biological communities and ecosystem processes in the coastal zone. For example, while some estuaries exhibit classic symptoms of acute eutrophication, including enhanced production of algal biomass, other nutrient-rich estuaries maintain low algal biomass and primary production. This implies that large differences exist among coastal ecosystems in the rates and patterns of nutrient assimilation and cycling. Part of this variability comes from differences among ecosystems in the other resource that can limit algal growth and production - the light energy required for photosynthesis. Complete understanding of the eutrophication process requires consideration of the interacting effects of light and nutrients, including the role of light availability as a regulator of the expression of eutrophication. A simple index of the relative strength of light and nutrient limitation of algal growth can be derived from models that describe growth rate as a function of these resources. This index can then be used as one diagnostic to classify the sensitivity of coastal ecosystems to the harmful effects of eutrophication. Here I illustrate the application of this diagnostic with light and nutrient measurements made in three California estuaries and two Dutch estuaries.

Marine fisheries declines viewed upside down: human impacts on consumer-driven nutrient recycling.

PubMed

Layman, Craig A; Allgeier, Jacob E; Rosemond, Amy D; Dahlgren, Craig P; Yeager, Lauren A

2011-03-01

We quantified how two human impacts (overfishing and habitat fragmentation) in nearshore marine ecosystems may affect ecosystem function by altering the role of fish as nutrient vectors. We empirically quantified size-specific excretion rates of one of the most abundant fishes (gray snapper, Lutjanus griseus) in The Bahamas and combined these with surveys of fish abundance to estimate population-level excretion rates. The study was conducted across gradients of two human disturbances: overfishing and ecosystem fragmentation (estuaries bisected by roads), to evaluate how each could result in reduced population-level nutrient cycling by consumers. Mean estimated N and P excretion rates for gray snapper populations were on average 456% and 541% higher, respectively, in unfished sites. Ecosystem fragmentation resulted in significant reductions of recycling rates by snapper, with degree of creek fragmentation explaining 86% and 72% of the variance in estimated excretion for dissolved N and P, respectively. Additionally, we used nutrient limitation assays and primary producer nutrient content to provide a simple example of how marine fishery declines may affect primary production. This study provides an initial step toward integrating marine fishery declines and consumer-driven nutrient recycling to more fully understand the implications of human impacts in marine ecosystems.

Root morphology and mycorrhizal symbioses together shape nutrient foraging strategies of temperate trees

PubMed Central

Chen, Weile; Koide, Roger T.; Adams, Thomas S.; DeForest, Jared L.; Cheng, Lei; Eissenstat, David M.

2016-01-01

Photosynthesis by leaves and acquisition of water and minerals by roots are required for plant growth, which is a key component of many ecosystem functions. Although the role of leaf functional traits in photosynthesis is generally well understood, the relationship of root functional traits to nutrient uptake is not. In particular, predictions of nutrient acquisition strategies from specific root traits are often vague. Roots of nearly all plants cooperate with mycorrhizal fungi in nutrient acquisition. Most tree species form symbioses with either arbuscular mycorrhizal (AM) or ectomycorrhizal (EM) fungi. Nutrients are distributed heterogeneously in the soil, and nutrient-rich “hotspots” can be a key source for plants. Thus, predicting the foraging strategies that enable mycorrhizal root systems to exploit these hotspots can be critical to the understanding of plant nutrition and ecosystem carbon and nutrient cycling. Here, we show that in 13 sympatric temperate tree species, when nutrient availability is patchy, thinner root species alter their foraging to exploit patches, whereas thicker root species do not. Moreover, there appear to be two distinct pathways by which thinner root tree species enhance foraging in nutrient-rich patches: AM trees produce more roots, whereas EM trees produce more mycorrhizal fungal hyphae. Our results indicate that strategies of nutrient foraging are complementary among tree species with contrasting mycorrhiza types and root morphologies, and that predictable relationships between below-ground traits and nutrient acquisition emerge only when both roots and mycorrhizal fungi are considered together. PMID:27432986

Root morphology and mycorrhizal symbioses together shape nutrient foraging strategies of temperate trees.

PubMed

Chen, Weile; Koide, Roger T; Adams, Thomas S; DeForest, Jared L; Cheng, Lei; Eissenstat, David M

2016-08-02

Photosynthesis by leaves and acquisition of water and minerals by roots are required for plant growth, which is a key component of many ecosystem functions. Although the role of leaf functional traits in photosynthesis is generally well understood, the relationship of root functional traits to nutrient uptake is not. In particular, predictions of nutrient acquisition strategies from specific root traits are often vague. Roots of nearly all plants cooperate with mycorrhizal fungi in nutrient acquisition. Most tree species form symbioses with either arbuscular mycorrhizal (AM) or ectomycorrhizal (EM) fungi. Nutrients are distributed heterogeneously in the soil, and nutrient-rich "hotspots" can be a key source for plants. Thus, predicting the foraging strategies that enable mycorrhizal root systems to exploit these hotspots can be critical to the understanding of plant nutrition and ecosystem carbon and nutrient cycling. Here, we show that in 13 sympatric temperate tree species, when nutrient availability is patchy, thinner root species alter their foraging to exploit patches, whereas thicker root species do not. Moreover, there appear to be two distinct pathways by which thinner root tree species enhance foraging in nutrient-rich patches: AM trees produce more roots, whereas EM trees produce more mycorrhizal fungal hyphae. Our results indicate that strategies of nutrient foraging are complementary among tree species with contrasting mycorrhiza types and root morphologies, and that predictable relationships between below-ground traits and nutrient acquisition emerge only when both roots and mycorrhizal fungi are considered together.

The microbial nitrogen-cycling network.

PubMed

Kuypers, Marcel M M; Marchant, Hannah K; Kartal, Boran

2018-05-01

Nitrogen is an essential component of all living organisms and the main nutrient limiting life on our planet. By far, the largest inventory of freely accessible nitrogen is atmospheric dinitrogen, but most organisms rely on more bioavailable forms of nitrogen, such as ammonium and nitrate, for growth. The availability of these substrates depends on diverse nitrogen-transforming reactions that are carried out by complex networks of metabolically versatile microorganisms. In this Review, we summarize our current understanding of the microbial nitrogen-cycling network, including novel processes, their underlying biochemical pathways, the involved microorganisms, their environmental importance and industrial applications.

Does diet influence consumer nutrient cycling? Macroinvertebrate and fish excretion in streams

Treesearch

Ryan McManamay; Jackson Webster; H. Valett; C. Dolloff

2011-01-01

Consumer nutrient cycling supplies limiting elements to autotrophic and heterotrophic organisms in aquatic systems. However, the role of consumers in supplying nutrients may change depending on their diet and their own stoichiometry. We evaluated the stoichiometry, N and P excretion, and diets of the dominant macroinvertebrates and fish at 6 stream sites to determine...

Nutrient Cycling in Managed and Unmanaged Oak Woodland-Grass Ecosystems

Treesearch

Randy Dahlgren; Michael J. Singer

1991-01-01

The influence of oak trees and grazing on nutrient cycling in oak woodland-grass ecosystems was examined at the Sierra Foothill Range Field Station in the northern-Sierra Nevada foothills of California. Nutrient concentrations in ecosystem waterflows (precipitation, canopy throughfall, and soil solutions) were monitored in a non-managed natural area and in an adjacent...

Decomposition rate comparisons between frequently burned and unburned areas of uneven-aged loblolly pine stands in southeastern Arkansas

Treesearch

Miclele Renschin; Hal O. Leichty; Michael G. Shelton

2001-01-01

Although fire has been used extensively over long periods of time in loblolly pine (Pinis taeda L.) ecosystems, little is known concerning the effects of frequent fire use on nutrient cycling and decomposition. To better understand the long-term effects of fire on these processes, foliar litter decomposition rates were quantified in a study...

Aeolian nutrient fluxes following wildfire in sagebrush steppe: Implications for soil carbon storage

USGS Publications Warehouse

Hasselquist, N.J.; Germino, M.J.; Sankey, J.B.; Ingram, L.J.; Glenn, N.F.

2011-01-01

Pulses of aeolian transport following fire can profoundly affect the biogeochemical cycling of nutrients in semi-arid and arid ecosystems. Our objective was to determine horizontal nutrient fluxes occurring in the saltation zone during an episodic pulse of aeolian transport that occurred following a wildfire in a semi-arid sagebrush steppe ecosystem in southern Idaho, USA. We also examined how temporal trends in nutrient fluxes were affected by changes in particle sizes of eroded mass as well as nutrient concentrations associated with different particle size classes. In the burned area, total carbon (C) and nitrogen (N) fluxes were as high as 235 g C m????'1 d????'1 and 19 g N m????'1 d????'1 during the first few months following fire, whereas C and N fluxes were negligible in an adjacent unburned area throughout the study. Temporal variation in C and N fluxes following fire was largely attributable to the redistribution of saltation-sized particles. Total N and organic C concentrations in the soil surface were significantly lower in the burned relative to the unburned area one year after fire. Our results show how an episodic pulse of aeolian transport following fire can affect the spatial distribution of soil C and N, which, in turn, can have important implications for soil C storage. These findings demonstrate how an ecological disturbance can exacerbate a geomorphic process and highlight the need for further research to better understand the role aeolian transport plays in the biogeochemical cycling of C and N in recently burned landscapes. ?? Author(s) 2011. CC Attribution 3.0 License.

Aeolian nutrient fluxes following wildfire in sagebrush steppe: Implications for soil carbon storage

USGS Publications Warehouse

Hasselquist, N.J.; Germino, M.J.; Sankey, J.B.; Ingram, L.J.; Glenn, N.F.

2011-01-01

Pulses of aeolian transport following fire can profoundly affect the biogeochemical cycling of nutrients in semi-arid and arid ecosystems. Our objective was to determine horizontal nutrient fluxes during an episodic pulse of aeolian transport that occurred following a wildfire in a semi-arid sagebrush steppe ecosystem in southern Idaho, USA. We also examined how temporal trends in nutrient fluxes were affected by changes in particle sizes of eroded mass as well as nutrient concentrations associated with different particle size classes. In the burned area, total carbon (C) and nitrogen (N) fluxes were as high as 235 g C m????'1 d????'1 and 19 g N m????'1 d????'1 during the first few months following fire, whereas C and N fluxes were negligible in an adjacent unburned area throughout the study. Temporal variation in C and N fluxes following fire was largely attributable to the redistribution of saltation-sized particles. Total N and organic C concentrations in the soil surface were significantly lower in the burned relative to the unburned area one year after fire. Our results show how an episodic pulse of aeolian transport following fire can affect the spatial distribution of soil C and N, which, in turn, can have important implications for soil C storage. These findings demonstrate how an ecological disturbance can exacerbate a geomorphic process and highlight the need for further research to better understand the role aeolian transport plays in the biogeochemical cycling of C and N in recently burned landscapes. ?? 2011 Author(s).

Monitoring Phenology as Indicator for Timing of Nutrient Inputs in Northern Gulf Watersheds

NASA Technical Reports Server (NTRS)

Ross, Kenton W.; Spiering, Bruce A.; Kalcic, Maria T.

2009-01-01

Nutrient over-enrichment defined by the U.S. Environmental Protection Agency as the anthropogenic addition of nutrients, in addition to any natural processes, causing adverse effects or impairments to the beneficial uses of a water body has been identified as one of the most significant environmental problems facing sensitive estuaries and coastal waters. Understanding the timing of nutrient inputs into those waters through remote sensing observables helps define monitoring and mitigation strategies. Remotely sensed data products can trace both forcings and effects of the nutrient system from landscape to estuary. This project is focused on extracting nutrient information from the landscape. The timing of nutrients entering coastal waters from the land boundary is greatly influenced by hydrologic processes, but can also be affected by the timing of nutrient additions across the landscape through natural or anthropogenic means. Non-point source nutrient additions to watersheds are often associated with specific seasonal cycles, such as decomposition of organic materials in fall and winter or addition of fertilizers to crop lands in the spring. These seasonal cycles or phenology may in turn be observed through the use of satellite sensors. Characterization of the phenology of various land cover types may be of particular interest in Gulf of Mexico estuarine systems with relatively short pathways between intensively managed systems and the land/estuarine boundary. The objective of this study is to demonstrate the capability of monitoring phenology of specific classes of land, such as agriculture and managed timberlands, at a refined watershed level. The extraction of phenological information from the Moderate Resolution Imaging Spectroradiometer (MODIS) data record is accomplished using analytical tools developed for NASA at Stennis Space Center: the Time Series Product Tool and the Phenological Parameters Estimation Tool. MODIS reflectance data (product MOD09) were used to compute the Normalized Difference Vegetation Index, which is sensitive to changes in vegetation canopies. The project team is working directly with the Mississippi Department of Environmental Quality to understand end-user requirements for this type of information product. Initial focus areas are identification of time frames for pre-plant fertilizer applications (prior to start of season), side-dress fertilizer applications (during rapid green-up), and periods of plant decomposition (during and after senescence). Prototypical maps of phenological stages related to these time frames have been generated for watersheds in the northern Gulf of Mexico. Where feasible, these maps have been compared to existing in situ nutrient monitoring data, but the in situ data is temporally sparse (monthly frequency or less), which makes interpretation challenging. Future work will include integrating effects of rainfall and seeking couplings with estuarine remote sensing.

The importance of benthic-pelagic coupling for marine ecosystem functioning in a changing world.

PubMed

Griffiths, Jennifer R; Kadin, Martina; Nascimento, Francisco J A; Tamelander, Tobias; Törnroos, Anna; Bonaglia, Stefano; Bonsdorff, Erik; Brüchert, Volker; Gårdmark, Anna; Järnström, Marie; Kotta, Jonne; Lindegren, Martin; Nordström, Marie C; Norkko, Alf; Olsson, Jens; Weigel, Benjamin; Žydelis, Ramunas; Blenckner, Thorsten; Niiranen, Susa; Winder, Monika

2017-06-01

Benthic-pelagic coupling is manifested as the exchange of energy, mass, or nutrients between benthic and pelagic habitats. It plays a prominent role in aquatic ecosystems, and it is crucial to functions from nutrient cycling to energy transfer in food webs. Coastal and estuarine ecosystem structure and function are strongly affected by anthropogenic pressures; however, there are large gaps in our understanding of the responses of inorganic nutrient and organic matter fluxes between benthic habitats and the water column. We illustrate the varied nature of physical and biological benthic-pelagic coupling processes and their potential sensitivity to three anthropogenic pressures - climate change, nutrient loading, and fishing - using the Baltic Sea as a case study and summarize current knowledge on the exchange of inorganic nutrients and organic material between habitats. Traditionally measured benthic-pelagic coupling processes (e.g., nutrient exchange and sedimentation of organic material) are to some extent quantifiable, but the magnitude and variability of biological processes are rarely assessed, preventing quantitative comparisons. Changing oxygen conditions will continue to have widespread effects on the processes that govern inorganic and organic matter exchange among habitats while climate change and nutrient load reductions may have large effects on organic matter sedimentation. Many biological processes (predation, bioturbation) are expected to be sensitive to anthropogenic drivers, but the outcomes for ecosystem function are largely unknown. We emphasize how improved empirical and experimental understanding of benthic-pelagic coupling processes and their variability are necessary to inform models that can quantify the feedbacks among processes and ecosystem responses to a changing world. © 2017 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

Cross-continental comparison of the functional composition and carbon allocation of two altitudinal forest transects in Ecuador and Rwanda.

NASA Astrophysics Data System (ADS)

Verbeeck, Hans; Bauters, Marijn; Bruneel, Stijn; Demol, Miro; Taveirne, Cys; Van Der Heyden, Dries; Kearsley, Elizabeth; Cizungu, Landry; Boeckx, Pascal

2017-04-01

Tropical forests are key actors in the global carbon cycle. Predicting future responses of these forests to global change is challenging, but important for global climate models. However, our current understanding of such responses is limited, due to the complexity of forest ecosystems and the slow dynamics that inherently form these systems. Our understanding of ecosystem ecology and functioning could greatly benefit from experimental setups including strong environmental gradients in the tropics, as found on altitudinal transects. We setup two such transects in both South-America and Central Africa, focussing on shifts in carbon allocation, forest structure, nutrient cycling and functional composition. The Ecuadorian transect has 16 plots (40 by 40 m) and ranges from 400 to 3000 m.a.s.l., and the Rwandan transect has 20 plots (40 by 40 m) from 1500 to 3000 m.a.s.l. All plots were inventoried and canopy, litter and soil were extensively sampled. By a cross-continental comparison of both transects, we will gain insight in how different or alike both tropical forests biomes are in their responses, and how universal the observed altitudinal adaption mechanisms are. This could provide us with vital information of the ecological responses of both biomes to future global change scenarios. Additionally, comparison of nutrient shifts and trait-based functional composition allows us to compare the biogeochemical cycles of African and South-American tropical forests.

Water column biogeochemistry of oxygen minimum zones in the eastern tropical North Atlantic and eastern tropical South Pacific Oceans

NASA Astrophysics Data System (ADS)

Löscher, C. R.; Bange, H. W.; Schmitz, R. A.; Callbeck, C. M.; Engel, A.; Hauss, H.; Kanzow, T.; Kiko, R.; Lavik, G.; Loginova, A.; Melzner, F.; Neulinger, S. C.; Pahlow, M.; Riebesell, U.; Schunck, H.; Thomsen, S.; Wagner, H.

2015-03-01

Recent modeling results suggest that oceanic oxygen levels will decrease significantly over the next decades to centuries in response to climate change and altered ocean circulation. Hence the future ocean may experience major shifts in nutrient cycling triggered by the expansion and intensification of tropical oxygen minimum zones (OMZs). There are numerous feedbacks between oxygen concentrations, nutrient cycling and biological productivity; however, existing knowledge is insufficient to understand physical, chemical and biological interactions in order to adequately assess past and potential future changes. We investigated the pelagic biogeochemistry of OMZs in the eastern tropical North Atlantic and eastern tropical South Pacific during a series of cruise expeditions and mesocosm studies. The following summarizes the current state of research on the influence of low environmental oxygen conditions on marine biota, viruses, organic matter formation and remineralization with a particular focus on the nitrogen cycle in OMZ regions. The impact of sulfidic events on water column biogeochemistry, originating from a specific microbial community capable of highly efficient carbon fixation, nitrogen turnover and N2O production is further discussed. Based on our findings, an important role of sinking particulate organic matter in controlling the nutrient stochiometry of the water column is suggested. These particles can enhance degradation processes in OMZ waters by acting as microniches, with sharp gradients enabling different processes to happen in close vicinity, thus altering the interpretation of oxic and anoxic environments.

Fire and nutrient cycling in shortgrass steppe of the southern Great Plains, USA

Treesearch

P.L. Ford; C.S. White

2005-01-01

Fire in semi-arid grasslands releases nutrients bound up in organic matter and accelerates the rate of decomposition in the soil. This research experimentally tested effects of season and frequency of fire on nutrient cycling dynamics in shortgrass steppe. The objective was to identify if fire treatments have the ability to increase potential grassland productivity...

Nitrogen cycling in canopy soils of tropical montane forests responds rapidly to indirect N and P fertilization.

PubMed

Matson, Amanda L; Corre, Marife D; Veldkamp, Edzo

2014-12-01

Although the canopy can play an important role in forest nutrient cycles, canopy-based processes are often overlooked in studies on nutrient deposition. In areas of nitrogen (N) and phosphorus (P) deposition, canopy soils may retain a significant proportion of atmospheric inputs, and also receive indirect enrichment through root uptake followed by throughfall or recycling of plant litter in the canopy. We measured net and gross rates of N cycling in canopy soils of tropical montane forests along an elevation gradient and assessed indirect effects of elevated nutrient inputs to the forest floor. Net N cycling rates were measured using the buried bag method. Gross N cycling rates were measured using (15) N pool dilution techniques. Measurements took place in the field, in the wet and dry season, using intact cores of canopy soil from three elevations (1000, 2000 and 3000 m). The forest floor had been fertilized biannually with moderate amounts of N and P for 4 years; treatments included control, N, P, and N + P. In control plots, gross rates of NH4 (+) transformations decreased with increasing elevation; gross rates of NO3 (-) transformations did not exhibit a clear elevation trend, but were significantly affected by season. Nutrient-addition effects were different at each elevation, but combined N + P generally increased N cycling rates at all elevations. Results showed that canopy soils could be a significant N source for epiphytes as well as contributing up to 23% of total (canopy + forest floor) mineral N production in our forests. In contrast to theories that canopy soils are decoupled from nutrient cycling in forest floor soil, N cycling in our canopy soils was sensitive to slight changes in forest floor nutrient availability. Long-term atmospheric N and P deposition may lead to increased N cycling, but also increased mineral N losses from the canopy soil system. © 2014 John Wiley & Sons Ltd.

Linking the response of bacterial populations to plant development through analysis of rhizosphere-competence traits of soil bacteria

NASA Astrophysics Data System (ADS)

Cho, H. J.; Karaoz, U.; Zhalnina, K.; Firestone, M. K.; Brodie, E.

2016-12-01

A growing plant root exudes changing combinations of compounds including root litter and other detritus throughout its developmental stages, providing a major source of organic C for rhizosphere bacteria. Clear patterns of microbial succession have been observed in the rhizosphere of a number of plants. These patterns of microbial succession are likely key to the processing of soil organic carbon and nutrient recycling. What is less well understood are the microbial traits, or combinations of traits, selected for during plant development. Are these traits or trait-combinations conserved, and is phylogeny a useful integrator of traits? Understanding the mechanisms underlying ecological succession would enable improved prediction of future rhizosphere states and consequences for C and nutrient cycles. In this study, we resolve the responses of rhizosphere bacteria at strain-level during plant (Avena fatua) developmental stages using both isolation and metagenomic approaches. Metagenome reads from bulk and rhizosphere soils were mapped to the genomes of thirty nine bacterial isolates numerically abundant ( 0.5% in relative abundance) and phylogenetically representative of these soils, and also to ninety six metagenome-derived genome bins. Analysis of temporal coverage patterns demonstrate that bacteria can be classified as positive and negative rhizosphere responders, with traits associated with root exudate utilization being important. Significant strain level diversity was observed and variance in the temporal coverage patterns further distinguished closely related strains of the same genera. For example, while a number of strains from the Bradyrhizobia, Mesorhizobia and Mycobacteria all increased in coverage with root growth, suggesting that recently acquired traits are selected for. Candidate traits distinguishing closely related strains included those related to xylose and other plant cell-wall derived sugar utilization, motility and aromatic organic acid utilization. These combinations of traits act together to influence rhizosphere bacterial succession, and developing linkages to other traits related to carbon and nutrient cycling will be key to understanding the feedbacks between plant response to environmental change and soil biogeochemical cycles.

Headwater Nutrient Concentration Patterns in Response to Storm Events Across Land Use Types using In Situ Sensors

NASA Astrophysics Data System (ADS)

Price, A.; Wollheim, W. M.; Mulukutla, G. K.; Carey, R. O.; McDowell, W. H.

2012-12-01

Understanding the aquatic biogeochemical impacts of land use change and climate variability will require improved understanding of nutrient variability over temporal scales ranging from storms to seasons. New in situ sensor technology offers the prospect of efficient nutrient measurements over multiple time scales. We quantified nutrient flux patterns in response to storm events across seasons using in situ nutrient sensors deployed in headwater streams draining three land use types (forest, suburban, and agriculture) within the Lamprey River watershed, New Hampshire, between April-December 2012. We utilized two sensor suites, each consisting of a Satlantic Submersible Ultraviolet Nitrate Analyzer (NO3-N), Turner Designs C6 Multi-Sensor Platform (CDOM, Turbidity, Chl), Hydrolab MS5 (Dissolved Oxygen, pH), WET Labs Cycle P (PO4-P), and Hobo Water Level & Conductivity meters. Preliminary spring/summer comparisons at the suburban site suggest increased baseflow nitrate concentrations and decreased diurnal nitrate variability (~0.05 vs. 0.035 mg/L daily fluctuation) following leaf emergence in spring. Nitrate concentrations were diluted during storms. Hysteresis was evident, suggesting groundwater nitrate sources attributable to septic systems were diluted by surface runoff during spring storms. The agricultural stream showed similar but more extreme patterns of increasing baseflow nitrate during the summer (~2.4 to 4.1 mg/L) and dilution during storms. The compilation of a high-frequency dataset for headwater streams across seasons and land-use types will provide valuable insight into complex land use/water quality relationships in urbanizing watersheds.

Global changes in biogeochemical cycles in response to human activities

NASA Technical Reports Server (NTRS)

Moore, Berrien, III; Melillo, Jerry

1994-01-01

The main objective of our research was to characterize biogeochemical cycles at continental and global scales in both terrestrial and aquatic ecosystems. This characterization applied to both natural ecosystems and those disturbed by human activity. The primary elements of interest were carbon and nitrogen and the analysis sought to quantify standing stocks and dynamic cycling processes. The translocation of major nutrients from the terrestrial landscape to the atmosphere (via trace gases) and to fluvial systems (via leaching, erosional losses, and point source pollution) were of particular importance to this study. Our aim was to develop the first generation of Earth System Models. Our research was organized around the construction and testing of component biogeochemical models which treated terrestrial ecosystem processes, aquatic nutrient transport through drainage basins, and trace gas exchanges at the continental and global scale. A suite of three complementary models were defined within this construct. The models were organized to operate at a 1/2 degree latitude by longitude level of spatial resolution and to execute at a monthly time step. This discretization afforded us the opportunity to understand the dynamics of the biosphere down to subregional scales, while simultaneously placing these dynamics into a global context.

Diagnosis of CO2 Fluxes in the Coastal Ocean

NASA Astrophysics Data System (ADS)

Dai, M.; Cao, Z.; Yang, W.; Guo, X.; Yin, Z.; Zhao, Y.

2017-12-01

Coastal ocean carbon is an important component of the global carbon cycle. However, its mechanistic-based conceptualization, a prerequisite of coastal carbon modeling and its inclusion in the Earth System Model, remains difficult due to the highest variability in both time and space. Here we show that the inter-seasonal change of the global coastal pCO2 is more determined by non-temperature factors such as biological drawdown and water mass mixing, the latter of which features the dynamic boundary processes of the coastal ocean at both land-margin and margin-open ocean interfaces. Considering these unique features, we resolve the coastal CO2 fluxes using a semi-analytical approach coupling physics-biogeochemistry and carbon-nutrients and conceptualize the coastal carbon cycle into Ocean-dominated Margins (OceMar) and River-dominated Ocean Margins (RiOMar). The diagnostic result of CO2 fluxes in the South China Sea basin and the Arabian Sea as OceMars and in the Pearl River Plume as a RioMar is consistent with field observations. Our mechanistic-based diagnostic approach therefore helps better understand and model coastal carbon cycle yet the stoichiometry of carbon-nutrients coupling needs scrutiny when applying our approach.

Adaptability in linkage of soil carbon nutrient cycles - the SEAM model

NASA Astrophysics Data System (ADS)

Wutzler, Thomas; Zaehle, Sönke; Schrumpf, Marion; Ahrens, Bernhard; Reichstein, Markus

2017-04-01

In order to understand the coupling of carbon (C) and nitrogen (N) cycles, it is necessary to understand C and N-use efficiencies of microbial soil organic matter (SOM) decomposition. While important controls of those efficiencies by microbial community adaptations have been shown at the scale of a soil pore, an abstract simplified representation of community adaptations is needed at ecosystem scale. Therefore we developed the soil enzyme allocation model (SEAM), which takes a holistic, partly optimality based approach to describe C and N dynamics at the spatial scale of an ecosystem and time-scales of years and longer. We explicitly modelled community adaptation strategies of resource allocation to extracellular enzymes and enzyme limitations on SOM decomposition. Using SEAM, we explored whether alternative strategy-hypotheses can have strong effects on SOM and inorganic N cycling. Results from prototypical simulations and a calibration to observations of an intensive pasture site showed that the so-called revenue enzyme allocation strategy was most viable. This strategy accounts for microbial adaptations to both, stoichiometry and amount of different SOM resources, and supported the largest microbial biomass under a wide range of conditions. Predictions of the SEAM model were qualitatively similar to models explicitly representing competing microbial groups. With adaptive enzyme allocation under conditions of high C/N ratio of litter inputs, N in formerly locked in slowly degrading SOM pools was made accessible, whereas with high N inputs, N was sequestered in SOM and protected from leaching. The finding that adaptation in enzyme allocation changes C and N-use efficiencies of SOM decomposition implies that concepts of C-nutrient cycle interactions should take account for the effects of such adaptations. This can be done using a holistic optimality approach.

Stable isotopes and Digital Elevation Models to study nutrient inputs in high-Arctic lakes

NASA Astrophysics Data System (ADS)

Calizza, Edoardo; Rossi, David; Costantini, Maria Letizia; Careddu, Giulio; Rossi, Loreto

2016-04-01

Ice cover, run-off from the watershed, aquatic and terrestrial primary productivity, guano deposition from birds are key factors controlling nutrient and organic matter inputs in high-Arctic lakes. All these factors are expected to be significantly affected by climate change. Quantifying these controls is a key baseline step to understand what combination of factors subtends the biological productivity in Arctic lakes and will drive their ecological response to environmental change. Basing on Digital Elevation Models, drainage maps, and C and N elemental content and stable isotope analysis in sediments, aquatic vegetation and a dominant macroinvertebrate species (Lepidurus arcticus Pallas 1973) belonging to Tvillingvatnet, Storvatnet and Kolhamna, three lakes located in North Spitsbergen (Svalbard), we propose an integrated approach for the analysis of (i) nutrient and organic matter inputs in lakes; (ii) the role of catchment hydro-geomorphology in determining inter-lake differences in the isotopic composition of sediments; (iii) effects of diverse nutrient inputs on the isotopic niche of Lepidurus arcticus. Given its high run-off and large catchment, organic deposits in Tvillingvatnet where dominated by terrestrial inputs, whereas inputs were mainly of aquatic origin in Storvatnet, a lowland lake with low potential run-off. In Kolhamna, organic deposits seem to be dominated by inputs from birds, which actually colonise the area. Isotopic signatures were similar between samples within each lake, representing precise tracers for studies on the effect of climate change on biogeochemical cycles in lakes. The isotopic niche of L. aricticus reflected differences in sediments between lakes, suggesting a bottom-up effect of hydro-geomorphology characterizing each lake on nutrients assimilated by this species. The presented approach proven to be an effective research pathway for the identification of factors subtending to nutrient and organic matter inputs and transfer within each water body, as well as for the modelling of expected changes in nutrient content associated to changes in isotopic composition of sediments. Key words: nitrogen; carbon, sediment; biogeochemical cycle; climate change; hydro-ecology; isotopic niche; Svalbard

Simulation of annual biogeochemical cycles of nutrient balance, phytoplankton bloom(s), and DO in Puget Sound using an unstructured grid model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khangaonkar, Tarang; Sackmann, Brandon; Long, Wen

2012-08-14

Nutrient pollution from rivers, nonpoint source runoff, and nearly 100 wastewater discharges is a potential threat to the ecological health of Puget Sound with evidence of hypoxia in some basins. However, the relative contributions of loads entering Puget Sound from natural and anthropogenic sources, and the effects of exchange flow from the Pacific Ocean are not well understood. Development of a quantitative model of Puget Sound is thus presented to help improve our understanding of the annual biogeochemical cycles in this system using the unstructured grid Finite-Volume Coastal Ocean Model framework and the Integrated Compartment Model (CE-QUAL-ICM) water quality kinetics.more » Results based on 2006 data show that phytoplankton growth and die-off, succession between two species of algae, nutrient dynamics, and dissolved oxygen in Puget Sound are strongly tied to seasonal variation of temperature, solar radiation, and the annual exchange and flushing induced by upwelled Pacific Ocean waters. Concentrations in the mixed outflow surface layer occupying approximately 5–20 m of the upper water column show strong effects of eutrophication from natural and anthropogenic sources, spring and summer algae blooms, accompanied by depleted nutrients but high dissolved oxygen levels. The bottom layer reflects dissolved oxygen and nutrient concentrations of upwelled Pacific Ocean water modulated by mixing with biologically active surface outflow in the Strait of Juan de Fuca prior to entering Puget Sound over the Admiralty Inlet. The effect of reflux mixing at the Admiralty Inlet sill resulting in lower nutrient and higher dissolved oxygen levels in bottom waters of Puget Sound than the incoming upwelled Pacific Ocean water is reproduced. Finally, by late winter, with the reduction in algal activity, water column constituents of interest, were renewed and the system appeared to reset with cooler temperature, higher nutrient, and higher dissolved oxygen waters from the Pacific Ocean.« less

Hydrologic connectivity as a framework for understanding biogeochemical flux through watersheds and along fluvial networks

NASA Astrophysics Data System (ADS)

Covino, Tim

2017-01-01

Hydrologic connections can link hillslopes to channel networks, streams to lakes, subsurface to surface, land to atmosphere, terrestrial to aquatic, and upstream to downstream. These connections can develop across vertical, lateral, and longitudinal dimensions and span spatial and temporal scales. Each of these dimensions and scales are interconnected, creating a mosaic of nested hydrologic connections and associated processes. In turn, these interacting and nested processes influence the transport, cycling, and transformation of organic material and inorganic nutrients through watersheds and along fluvial networks. Although hydrologic connections span dimensions and spatiotemporal scales, relationships between connectivity and carbon and nutrient dynamics are rarely evaluated within this framework. The purpose of this paper is to provide a cross-disciplinary view of hydrologic connectivity - highlighting the various forms of hydrologic connectivity that control fluxes of organic material and nutrients - and to help stimulate integration across scales and dimensions, and collaboration among disciplines.

Nutrient cycling, connectivity, and free-floating plant abundance in backwater lakes of the Upper Mississippi River

USGS Publications Warehouse

Houser, Jeff N.; Giblin, Shawn M.; James, William F.; Langrehr, H.A.; Rogala, James T.; Sullivan, John F.; Gray, Brian R.

2013-01-01

River eutrophication may cause the formation of dense surface mats of free floating plants (FFP; e.g., duckweeds and filamentous algae) which may adversely affect the ecosystem. We investigated associations among hydraulic connectivity to the channel, nutrient cycling, FFP, submersed aquatic vegetation (SAV), and dissolved oxygen concentration (DO) in ten backwater lakes of the Upper Mississippi River (UMR) that varied in connectivity to the channel. Greater connectivity was associated with higher water column nitrate (NO3-N) concentration, higher rates of sediment phosphorus (P) release, and higher rates of NO3-N flux to the sediments. Rates of sediment P and N (as NH4-N) release were similar to those of eutrophic lakes. Water column nutrient concentrations were high, and FFP tissue was nutrient rich suggesting that the eutrophic condition of the UMR often facilitated abundant FFP. However, tissue nutrient concentrations, and the associations between FFP biomass and water column nutrient concentrations, suggested that nutrients constrained FFP abundance at some sites. FFP abundance was positively associated with SAV abundance and negatively associated with dissolved oxygen concentration. These results illustrate important connections among hydraulic connectivity, nutrient cycling, FFP, SAV, and DO in the backwaters of a large, floodplain river.

Phosphorus in the ocean and marine sediments: similarities between present and past processes

NASA Astrophysics Data System (ADS)

Tamburini, F.

2004-12-01

Because phosphorus (P) is an essential nutrient, geochemical research has focused over the years on understanding the different aspects of the P cycle in the oceans, from the global to microbial scale. In the last 40 years, giant phosphorite deposits were largely studied, and their episodic occurrence in the geological record was alternatively interpreted as the product of shallow water environments, high productivity, low-sedimentation rates, and/or changes in sea level. Although research has focused more recently on the oceanic burial fluxes and residence time of P, there is still a general agreement on the need for more data. Thanks to new analytical techniques, allowing the detection of small quantities of phosphate (on the order of ?mol/g), and to the increased availability of sediment cores, P-bearing sediments have been found everywhere beneath the ocean floor. This finding has changed our understanding of P behavior in the ocean, and is redefining the role of P as an important nutrient, for example, over glacial-interglacial time scales. I will present glacial-interglacial reconstructions of burial and benthic fluxes of P, with the goal of understanding to which extent the P cycle is linked to global processes. The data, averaged to the whole ocean, indicate that burial fluxes of reactive P during glacial times are not considerably lower than during interglacials. This observation could lead to the conclusion that no changes occurred in P cycle on glacial-interglacial timescales and, therefore, that C cycle and climate variations were independent of P cycle. However, when the benthic flux estimates are taken into account, a different picture arises. During low sea level periods, the redistribution of sediments from shallow to deep waters, due to the reduction of the continental margin surface, fostered P regeneration during settling of organic matter. Even if P burial fluxes remain fairly constant, the oceanic phosphate inventory of glacial bottom waters was probably higher. On a different time scale, the shift in P behavior between glacial and interglacial periods could have been promoted by conditions similar to those that led to the formation of phosphorite deposits, which are abundant in the geological past but rare today.

Effects of Nutrient Enrichment on Microbial Communities and Carbon Cycling in Wetland Soils

NASA Astrophysics Data System (ADS)

Hartman, W.; Neubauer, S. C.; Richardson, C. J.

2013-12-01

Soil microbial communities are responsible for catalyzing biogeochemical transformations underlying critical wetland functions, including cycling of carbon (C) and nutrients, and emissions of greenhouse gasses (GHG). Alteration of nutrient availability in wetland soils may commonly occur as the result of anthropogenic impacts including runoff from human land uses in uplands, alteration of hydrology, and atmospheric deposition. However, the impacts of altered nutrient availability on microbial communities and carbon cycling in wetland soils are poorly understood. To assess these impacts, soil microbial communities and carbon cycling were determined in replicate experimental nutrient addition plots (control, +N, +P, +NP) across several wetland types, including pocosin peat bogs (NC), freshwater tidal marshes (GA), and tidal salt marshes (SC). Microbial communities were determined by pyrosequencing (Roche 454) extracted soil DNA, targeting both bacteria (16S rDNA) and fungi (LSU) at a depth of ca. 1000 sequences per plot. Wetland carbon cycling was evaluated using static chambers to determine soil GHG fluxes, and plant inclusion chambers were used to determine ecosystem C cycling. Soil bacterial communities responded to nutrient addition treatments in freshwater and tidal marshes, while fungal communities did not respond to treatments in any of our sites. We also compared microbial communities to continuous biogeochemical variables in soil, and found that bacterial community composition was correlated only with the content and availability of soil phosphorus, while fungi responded to phosphorus stoichiometry and soil pH. Surprisingly, we did not find a significant effect of our nutrient addition treatments on most metrics of carbon cycling. However, we did find that several metrics of soil carbon cycling appeared much more related to soil phosphorus than to nitrogen or soil carbon pools. Finally, while overall microbial community composition was weakly correlated with soil carbon cycling, our work did identify a small number of individual taxonomic groups that were more strongly correlated with soil CO2 flux. These results suggest that a small number of microbial groups may potentially serve as keystone taxa (and functional indicators), which simple community fingerprinting approaches may overlook. Our results also demonstrate strong effects of soil phosphorus availability on both microbial communities and soil carbon cycling, even in wetland types traditionally considered to be nitrogen limited.

Environmental Genomic Analysis of Stratified Microbial Communities and Climate Active Gases in the Subarctic Pacific Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Wright, J.; Hallam, S.; Merzouk, A.; Tortell, P.

2008-12-01

Oxygen minimum zones (OMZs) are areas of low dissolved oxygen concentrations that play a major role in biogeochemical cycling within the world's oceans. They are major sinks for nitrogen and sources for the greenhouse gases carbon dioxide and nitrous oxide. Therefore, microbial mediated biological activity associated with these systems directly impacts ocean productivity and global climate balance. There is increasing evidence that ocean warming trends will decrease dissolved oxygen concentrations within the coastal and interior regions of the subarctic Pacific, causing an expansion of the hypoxic boundary layer. This expansion will have a direct effect on coastal benthic ecosystems and the productivity of marine fisheries due to habitat loss and changes in nutrient cycling. In order to understand the potential implications of these transitions, we are performing environmental genomic analyses of indigenous microbial communities found in coastal and open ocean OMZs in the subarctic Pacific Ocean in relation to dissolved gas and nutrient concentrations. In addition to identifying and describing the key microbial players and biochemical pathways contributing to carbon, nitrogen and sulfur metabolism within the subarctic Pacific Ocean, this work provides a solid comparative genomic foundation for understanding the biogeochemical processes at work in marine OMZs around the globe.

Apparatus and process to eliminate diffusional limitations in a membrane biological reactor by pressure cycling

DOEpatents

Efthymiou, George S.; Shuler, Michael L.

1989-08-29

An improved multilayer continuous biological membrane reactor and a process to eliminate diffusional limitations in membrane reactors in achieved by causing a convective flux of nutrient to move into and out of an immobilized biocatalyst cell layer. In a pressure cycled mode, by increasing and decreasing the pressure in the respective layers, the differential pressure between the gaseous layer and the nutrient layer is alternately changed from positive to negative. The intermittent change in pressure differential accelerates the transfer of nutrient from the nutrient layers to the biocatalyst cell layer, the transfer of product from the cell layer to the nutrient layer and the transfer of byproduct gas from the cell layer to the gaseous layer. Such intermittent cycling substantially eliminates mass transfer gradients in diffusion inhibited systems and greatly increases product yield and throughput in both inhibited and noninhibited systems.

A global model of carbon-nutrient interactions

NASA Technical Reports Server (NTRS)

Moore, Berrien, III; Gildea, Patricia; Vorosmarty, Charles; Mellilo, Jerry M.; Peterson, Bruce J.

1985-01-01

The global biogeochemical model presented has two primary objectives. First, it characterizes natural elemental cycles and their linkages for the four elements significant to Earth's biota: C, N, S, and P. Second, it describes changes in these cycles due to human activity. Global nutrient cycles were studied within the drainage basins of several major world rivers on each continent. The initial study region was the Mississippi drainage basin, concentrating on carbon and nitrogen. The model first establishes the nutrient budgets of the undisturbed ecosystems in a study region. It then uses a data set of land use histories for that region to document the changes in these budgets due to land uses. Nutrient movement was followed over time (1800 to 1980) for 30 ecosystems and 10 land use categories. A geographically referenced ecological information system (GREIS) was developed to manage the digital global data bases of 0.5 x 0.5 grid cells needed to run the model: potential vegetation, drainage basins, precipitation, runoff, contemporary land cover, and FAO soil maps of the world. The results show the contributions of land use categories to river nutrient loads on a continental scale; shifts in nutrient cycling patterns from closed, steady state systems to mobile transient or open, steady state systems; soil organic matter depletion patterns in U.S. agricultural lands; changing nutrient ratios due to land use changes; and the effect of using heavy fertilizer on aquatic systems.

Role of soil microbial processes in integrated pest management

DOE Office of Scientific and Technical Information (OSTI.GOV)

Francis, A.J.

1987-01-01

Soil microorganisms play a significant role in the carbon, nitrogen, phosphorus, and sulfur cycles in nature and are critical to the functioning of ecosystems. Microorganisms affect plant growth directly by regulating the availability of plant nutrients in soil, or indirectly by affecting the population dynamics of plant pathogens in soil. Any adverse effect on soil microorganisms or on the microbial processes will affect the soil fertility, availability of plant nutrients and the overall biogeochemical cycling of elements in nature. Soil microorganisms are responsible for the degradation and detoxification of pesticides; they control many insect pests, nematodes, and other plant pathogenicmore » microorganisms by parasitism, competition, production of antibiotics and other toxic substances. Also, they regulate the availability of major and minor nutrients as well as essential elements. The long-term effects of continuous and, in some instances, excessive application of pesticides on soil fertility is not fully understood. Although much information is available on the integrated pest management (IPM) system, we have very little understanding of the extent of soil microbial processes which modulate the overall effectiveness of various strategies employed in IPM. The purpose of this paper is to review briefly the key microbial processes and their relationship to the IPM system.« less

Stream nitrate responses to hydrological forcing and climate change in northern forests of the USA (Invited)

NASA Astrophysics Data System (ADS)

Sebestyen, S. D.; Campbell, J. L.; Shanley, J. B.; Pourmokhtarian, A.; Driscoll, C. T.; Boyer, E. W.

2009-12-01

There is a need to understand how climate variability and change affect nutrient delivery to surface waters. We analyzed long-term records of hydrochemical data to explore how the forms, concentrations, and loadings of nitrogen in forest streams throughout the northern USA vary with catchment wetness. We considered projected changes in growing season length and precipitation patterns to simulate future climate scenarios and to assess how stream nitrate loading responds to hydrological forcing under different climate change scenarios. At the Sleepers River Research Watershed in northeastern Vermont, model results suggest that stream nutrient loadings over the next century will respond to hydrological forcing during climate change that affects the amount of water that flows through the landscape. For example, growing season stream water yield (+20%) and nitrate loadings (+57%) increase in response to greater amounts of precipitation (+28%) during a warmer climate with a longer growing season (+43 days). We further explore these findings by presenting model results from a biogeochemical process model (PnET-BGC) to separate changes that are due to biogeochemical cycling and the effects of hydrological forcing. Our findings suggest that nitrogen cycling and transport will intensify during anthropogenic climate forcing, thereby affecting the timing and magnitude of annual stream nutrient loadings in northern forests of the USA.

Linking Nitrogen-Cycling Microbial Communities to Environmental Fluctuations and Biogeochemical Activity in a Large, Urban Estuary: the San Francisco Bay-Delta

NASA Astrophysics Data System (ADS)

Francis, C.

2015-12-01

Nitrogen (N) availability is an important factor controlling productivity and thus carbon cycling in estuaries. The fate of N in estuaries depends on the activities of the microbes that carry out the N-cycle, which in turn depend on factors such as organic matter availability, dissolved inorganic N, salinity, oxygen, and temperature. Key microbial N transformations include nitrification (the aerobic oxidation of ammonia to nitrite and nitrate) and denitrification (the anaerobic reduction of nitrate to dinitrogen gas). While denitrification leads to N loss, nitrification is the only link between reduced N (produced by decomposition) and oxidized N (substrates for N loss processes), and both processes are known to produce nitrous oxide (N2O), a potent greenhouse gas. Understanding controls of N-cycling in the San Francisco Bay-Delta (SFBD)—the largest estuary on the west coast of North America—is particularly important, as this urban estuary is massively polluted with N, even compared to classic "eutrophic" systems. Interestingly, the SFBD has been spared the detrimental consequences of nutrient enrichment, largely due to high suspended sediment concentrations (and thus low light penetration) throughout the water column, combined with high grazing pressure. However, the recent "clearing" of SFBD waters due to a sharp decrease in suspended sediments may significantly alter the ecology of the estuary, by increasing phytoplankton growth. Thus, the SFBD may be losing its historical resilience to eutrophication, and may soon be "high-nutrient, low-chlorophyll" no more. Elucidating the environmental factors affecting the community structure, activity, and functioning of N-cycling microbes in SFBD is crucial for determining how changes in turbidity and productivity will be propagated throughout the ecosystem. While substantial ecological research in the SFBD has focused on phytoplankton and food webs, bacterial and archaeal communities have received far less attention. Using a combination of molecular, biogeochemical, and 'omics' approaches, we have been examining how N-cycling microbial communities throughout the SFBD change in relation to environmental fluctuations—a critical step in understanding how microbial populations drive biogeochemical cycling in this estuary.

The future of the North American carbon cycle - projections and associated climate change

NASA Astrophysics Data System (ADS)

Huntzinger, D. N.; Chatterjee, A.; Cooley, S. R.; Dunne, J. P.; Hoffman, F. M.; Luo, Y.; Moore, D. J.; Ohrel, S. B.; Poulter, B.; Ricciuto, D. M.; Tzortziou, M.; Walker, A. P.; Mayes, M. A.

2016-12-01

Approximately half of anthropogenic emissions from the burning of fossil fuels is taken up annually by carbon sinks on the land and in the oceans. However, there are key uncertainties in how carbon uptake by terrestrial, ocean, and freshwater systems will respond to, and interact with, climate into the future. Here, we outline the current state of understanding on the future carbon budget of these major reservoirs within North America and the globe. We examine the drivers of future carbon cycle changes, including carbon-climate feedbacks, atmospheric composition, nutrient availability, and human activity and management decisions. Progress has been made at identifying vulnerabilities in carbon pools, including high-latitude permafrost, peatlands, freshwater and coastal wetlands, and ecosystems subject to disturbance events, such as insects, fire and drought. However, many of these processes/pools are not well represented in current models, and model intercomparison studies have shown a range in carbon cycle response to factors such as climate and CO2 fertilization. Furthermore, as model complexity increases, understanding the drivers of model spread becomes increasingly more difficult. As a result, uncertainties in future carbon cycle projections are large. It is also uncertain how management decisions and policies will impact future carbon stocks and flows. In order to guide policy, a better understanding of the risk and magnitude of North American carbon cycle changes is needed. This requires that future carbon cycle projections be conditioned on current observations and be reported with sufficient confidence and fully specified uncertainties.

The interplay between estuarine transport and biogeochemical processes in determining the nutrient conditions in bottom layers of non-tidal Gulf of Finland

NASA Astrophysics Data System (ADS)

Kõuts, Mariliis; Raudsepp, Urmas; Maljutenko, Ilja

2017-04-01

In coastal areas, especially estuaries, spatial distribution and seasonal cycling of chemical and biological variables is largely determined by local biogeochemical processes and water transport of different properties. In tidal estuaries, however, biogeochemical processes are affected by tides as frequent water exchange alters nutrient and oxygen concentrations. In wide and deep non-tidal estuary-type marginal seas spatial distribution and seasonal cycling are determined by the mixture of water transport and local biogeochemistry. The Baltic Sea is a stratified water basin where halocline divides the water column into two parts: upper layer, which is horizontally uniform in terms of distribution of chemical and biological parameters, and has clear seasonal cycle; and bottom part, where nutrient and oxygen dynamics is more complex. There water transport and sediment-water interface fluxes play a major role. Our prime focus is the Gulf of Finland in the Baltic Sea. It is a wide, non-tidal and stratified sub-basin known for its high nutrient concentrations and severe oxygen deficiency in summer. We modelled the Baltic Sea (including Gulf of Finland) using ERGOM, a biogeochemical model coupled with circulation model GETM. Seasonal cycling and water circulation were observed with a 40-year simulation from 1966 to 2006. Our results show that in shallow areas above halocline the seasonal cycle of phytoplankton, nutrients and oxygen concentrations is uniform in space. Water circulation does not create inhomogeneous distribution pattern of biogeochemical parameters and their seasonal cycle. The circulation in the Gulf of Finland is strongly modulated by the seasonality of estuarine transport. Below the halocline saline low-oxygen and nutrient-rich water is transported from the open Baltic Proper to the Gulf of Finland in spring and early summer. This results in the highest nutrient concentrations and the poorest oxygen conditions by the end of August. In the shallow area nutrients have high concentrations in March-April before the spring bloom of diatoms starts. Low oxygen and nutrient concentrations are observed at the end of August. There is a qualitative difference of nutrient dynamics between shallow and deep layers but quantification of the role of transport and local biogeochemical processes is still challenging.

Hydrology

USGS Publications Warehouse

Eisenbies, Mark H.; Hughes, W. Brian

2000-01-01

Hydrologic process are the main determinants of the type of wetland located on a site. Precipitation, groundwater, or flooding interact with soil properties and geomorphic setting to yield a complex matrix of conditions that control groundwater flux, water storage and discharge, water chemistry, biotic productivity, biodiversity, and biogeochemical cycling. Hydroperiod affects many abiotic factors that in turn determine plant and animal species composition, biodiversity, primary and secondary productivity, accumulation, of organic matter, and nutrient cycling. Because the hydrologic regime has a major influence on wetland functioning, understanding how hydrologic changes influence ecosystem processes is essential, especially in light of the pressures placed on remaining wetlands by society's demands for water resources and by potential global changes in climate.

Turning the Table: Plants Consume Microbes as a Source of Nutrients

PubMed Central

Paungfoo-Lonhienne, Chanyarat; Rentsch, Doris; Robatzek, Silke; Webb, Richard I.; Sagulenko, Evgeny; Näsholm, Torgny

2010-01-01

Interactions between plants and microbes in soil, the final frontier of ecology, determine the availability of nutrients to plants and thereby primary production of terrestrial ecosystems. Nutrient cycling in soils is considered a battle between autotrophs and heterotrophs in which the latter usually outcompete the former, although recent studies have questioned the unconditional reign of microbes on nutrient cycles and the plants' dependence on microbes for breakdown of organic matter. Here we present evidence indicative of a more active role of plants in nutrient cycling than currently considered. Using fluorescent-labeled non-pathogenic and non-symbiotic strains of a bacterium and a fungus (Escherichia coli and Saccharomyces cerevisiae, respectively), we demonstrate that microbes enter root cells and are subsequently digested to release nitrogen that is used in shoots. Extensive modifications of root cell walls, as substantiated by cell wall outgrowth and induction of genes encoding cell wall synthesizing, loosening and degrading enzymes, may facilitate the uptake of microbes into root cells. Our study provides further evidence that the autotrophy of plants has a heterotrophic constituent which could explain the presence of root-inhabiting microbes of unknown ecological function. Our discovery has implications for soil ecology and applications including future sustainable agriculture with efficient nutrient cycles. PMID:20689833

Maximum sinking velocities of suspended particulate matter in a coastal transition zone

NASA Astrophysics Data System (ADS)

Maerz, Joeran; Hofmeister, Richard; van der Lee, Eefke M.; Gräwe, Ulf; Riethmüller, Rolf; Wirtz, Kai W.

2016-09-01

Marine coastal ecosystem functioning is crucially linked to the transport and fate of suspended particulate matter (SPM). Transport of SPM is controlled by, amongst other factors, sinking velocity ws. Since the ws of cohesive SPM aggregates varies significantly with size and composition of the mineral and organic origin, ws exhibits large spatial variability along gradients of turbulence, SPM concentration (SPMC) and SPM composition. In this study, we retrieved ws for the German Bight, North Sea, by combining measured vertical turbidity profiles with simulation results for turbulent eddy diffusivity. We analyzed ws with respect to modeled prevailing dissipation rates ɛ and found that mean ws were significantly enhanced around log10(ɛ (m2 s-3)) ≈ -5.5. This ɛ region is typically found at water depths of approximately 15 to 20 m along cross-shore transects. Across this zone, SPMC declines towards the offshore waters and a change in particle composition occurs. This characterizes a transition zone with potentially enhanced vertical fluxes. Our findings contribute to the conceptual understanding of nutrient cycling in the coastal region which is as follows. Previous studies identified an estuarine circulation. Its residual landward-oriented bottom currents are loaded with SPM, particularly within the transition zone. This retains and traps fine sediments and particulate-bound nutrients in coastal waters where organic components of SPM become remineralized. Residual surface currents transport dissolved nutrients offshore, where they are again consumed by phytoplankton. Algae excrete extracellular polymeric substances which are known to mediate mineral aggregation and thus sedimentation. This probably takes place particularly in the transition zone and completes the coastal nutrient cycle. The efficiency of the transition zone for retention is thus suggested as an important mechanism that underlies the often observed nutrient gradients towards the coast.

An approach to understanding hydrologic connectivity on the hillslope and the implications for nutrient transport

USGS Publications Warehouse

Stieglitz, M.; Shaman, J.; McNamara, J.; Engel, V.; Shanley, J.; Kling, G.W.

2003-01-01

Hydrologic processes control much of the export of organic matter and nutrients from the land surface. It is the variability of these hydrologic processes that produces variable patterns of nutrient transport in both space and time. In this paper, we explore how hydrologic "connectivity" potentially affects nutrient transport. Hydrologic connectivity is defined as the condition by which disparate regions on the hillslope are linked via subsurface water flow. We present simulations that suggest that for much of the year, water draining through a catchment is spatially isolated. Only rarely, during storm and snowmelt events when antecedent soil moisture is high, do our simulations suggest that mid-slope saturation (or near saturation) occurs and that a catchment connects from ridge to valley. Observations during snowmelt at a small headwater catchment in Idaho are consistent with these model simulations. During early season discharge episodes, in which the mid-slope soil column is not saturated, the electrical conductivity in the stream remains low, reflecting a restricted, local (lower slope) source of stream water and the continued isolation of upper and mid-slope soil water and nutrients from the stream system. Increased streamflow and higher stream water electrical conductivity, presumably reflecting the release of water from the upper reaches of the catchment, are simultaneously observed when the mid-slope becomes sufficiently wet. This study provides preliminary evidence that the seasonal timing of hydrologic connectivity may affect a range of ecological processes, including downslope nutrient transport, C/N cycling, and biological productivity along the toposequence. A better elucidation of hydrologic connectivity will be necessary for understanding local processes as well as material export from land to water at regional and global scales. Copyright 2003 by the American Geophysical Union.

A global database of nitrogen and phosphorus excretion rates of aquatic animals

EPA Science Inventory

Animals can be important in modulating ecosystem-level nutrient cycling, although their importance varies greatly among species and ecosystems. Nutrient cycling rates of individual animals represent valuable data for testing the predictions of important frameworks such as the Met...

Mortality hotspots: nitrogen cycling in forest soils during vertebrate decomposition

USDA-ARS?s Scientific Manuscript database

Decomposing plants and animals fundamentally transform their surrounding environments, and serve as a critical source of limiting nutrients for macro- and micro-fauna. Animal mortality hotspots alter soil biogeochemical cycles, and these natural ephemeral nutrient patches are important for maintaini...

New insights into carbon acquisition and exchanges within the coral–dinoflagellate symbiosis under NH4+ and NO3− supply

PubMed Central

Ezzat, Leïla; Maguer, Jean-François; Grover, Renaud; Ferrier-Pagès, Christine

2015-01-01

Anthropogenic nutrient enrichment affects the biogeochemical cycles and nutrient stoichiometry of coastal ecosystems and is often associated with coral reef decline. However, the mechanisms by which dissolved inorganic nutrients, and especially nitrogen forms (ammonium versus nitrate) can disturb the association between corals and their symbiotic algae are subject to controversial debate. Here, we investigated the coral response to varying N : P ratios, with nitrate or ammonium as a nitrogen source. We showed significant differences in the carbon acquisition by the symbionts and its allocation within the symbiosis according to nutrient abundance, type and stoichiometry. In particular, under low phosphate concentration (0.05 µM), a 3 µM nitrate enrichment induced a significant decrease in carbon fixation rate and low values of carbon translocation, compared with control conditions (N : P = 0.5 : 0.05), while these processes were significantly enhanced when nitrate was replaced by ammonium. A combined enrichment in ammonium and phosphorus (N : P = 3 : 1) induced a shift in nutrient allocation to the symbionts, at the detriment of the host. Altogether, these results shed light into the effect of nutrient enrichment on reef corals. More broadly, they improve our understanding of the consequences of nutrient loading on reef ecosystems, which is urgently required to refine risk management strategies. PMID:26203006

Amino acids as a source of organic nitrogen in Antarctic endolithic microbial communities

NASA Technical Reports Server (NTRS)

McDonald, G.; Sun, H.

2002-01-01

In the Antarctic Dry Valleys, cryptoendolithic microbial communities occur within porous sandstone rocks. Current understanding of the mechanisms of physiological adaptation of these communities to the harsh Antarctic environment is limited, because traditional methods of studying microbial physiology are very difficult to apply to organisms with extremely low levels of metabolic activity. In order to fully understand carbon and nitrogen cycling and nutrient uptake in cryptoendolithic communities, and the metabolic costs that the organisms incur in order to survive, it is necessary to employ molecular geochemical techniques such as amino acid analysis in addition to physiological methods.

Vegetation composition, nutrient, and sediment dynamics along a floodplain landscape

USGS Publications Warehouse

Rybicki, Nancy B.; Noe, Gregory; Hupp, Cliff R.; Robinson, Myles

2015-01-01

Forested floodplains are important landscape features for retaining river nutrients and sediment loads but there is uncertainty in how vegetation influences nutrient and sediment retention. In order to understand the role of vegetation in nutrient and sediment trapping, we quantified species composition and the uptake of nutrients in plant material relative to landscape position and ecosystem attributes in an urban, Piedmont watershed in Virginia, USA. We investigated in situ interactions among vegetative composition, abundance, carbon (C), nitrogen (N) and phosphorus (P) fluxes and ecosystem attributes such as water level, shading, soil nutrient mineralization, and sediment deposition. This study revealed strong associations between vegetation and nutrient and sediment cycling processes at the plot scale and in the longitudinal dimension, but there were few strong patterns between these aspects at the scale of geomorphic features (levee, backswamp, and toe-slope). Patterns reflected the nature of the valley setting rather than a simple downstream continuum. Plant nutrient uptake and sediment trapping were greatest at downstream sites with the widest floodplain and lowest gradient where the hydrologic connection between the floodplain and stream is greater. Sediment trapping increased in association with higher herbaceous plant coverage and lower tree canopy density that, in turn, was associated with a more water tolerant tree community found in the lower watershed but not at the most downstream site in the watershed. Despite urbanization effects on the hydrology, this floodplain functioned as an efficient nutrient trap. N and P flux rates of herbaceous biomass and total litterfall more than accounted for the N and P mineralization flux rate, indicating that vegetation incorporated nearly all mineralized nutrients into biomass.

Riverine C, N, Si and P transport to the coastal ocean: An overview

USGS Publications Warehouse

Peterson, David H.; Hager, Stephen W.; Schemel, Laurence E.; Cayan, Daniel R.

1988-01-01

Terrestrial ecosystems cycle and recyle inorganic nutrients including a feedback to atmospheric dry deposition and precipitation (cf. Lewis et al., 1985). Each year, however, a small fraction per unit area of the atmosphere/plant/soil flux leaks from these land-based cycles via precipitation/runoff (Meybeck, 1982). These losses are, in general, unpreventable. Moreover, such nutrient “losses” have increased with increasing human population (Wollast, 1983); although to some extent this anthropogenic component can be controlled. Most rivers eventually flow into estuaries and the coastal ocean where their natural and anthropogenic nutrient loads continue to recycle, are lost to the atmosphere, or are buried in sediment. In one extreme, when riverine nutrient concentrations are exceedingly low, as in southwestern Canadian streams (Naiman and Sibert, 1978; Stockner and Shortreed, 1978, 1985), downstream plant biomass can be nutrient limited. In the other extreme, when these nutrient concentrations are very high such as in highly populated European river basins, downstream plant biomass can increase, perhaps intensifying natural anoxia cycles within the receiving estuarine/coastal ocean waters if these waters are stratified (Rosenberg, 1985).

Repeated use of ion-exchange resin membranes in calcareous soils

USGS Publications Warehouse

Sherrod, S.K.; Belnap, Jayne; Miller, M.E.

2003-01-01

This study compared the consistency of nutrient extraction among repeated cycles of ion-exchange resin membrane use. Two sandy calcareous soils and different equilibration temperatures were tested. No single nutrient retained consistent values from cycle to cycle in all treatments, although both soil source and temperature conferred some influence. It was concluded that the most conservative use of resin membranes is single-use.

Can uptake length in strams be determined by nutrient addition experiments? Results from an interbiome comparison study

Treesearch

P. J Mulholland; J. L. Tanks; J. R. Webster; W. B. Bowden; W. K Dodds; S. V. Gregory; N. B Grimm; J. L. Meriam; J. L. Meyer; B. J. Peterson; H. M. Valett; W. M. Wollheim

2002-01-01

Nutrient uptake length is an important parnmeter tor quantifying nutrient cycling in streams. Although nutrient tracer additions are the preierred method for measuring uptake length under ambient nutrient concentrations, short-term nutrient addition experiments have more irequently been used to estimate uptake length in streams. Theoretical analysis of the relationship...

Stoichiometry of a semi-aquatic plethodontid salamander: Intraspecific variation due to location, size and diet

EPA Science Inventory

Ecological stoichiometry provides a framework to investigate an organism's relationship to nutrient cycles. An organism's stoichiometry is thought to constrain its contribution to nutrient cycles (recycling or storage), and to limit its growth and reproduction. Factors that influ...

Temporal variation in the importance of a dominant consumer to stream nutrient cycling

DOE PAGES

Griffiths, Natalie A.; Hill, Walter

2014-06-19

Animal excretion can be a significant nutrient flux within ecosystems, where it supports primary production and facilitates microbial decomposition of organic matter. The effects of excretory products on nutrient cycling have been documented for various species and ecosystems, but temporal variation in these processes is poorly understood. We examined variation in excretion rates of a dominant grazing snail, Elimia clavaeformis, and its contribution to nutrient cycling, over the course of 14 months in a well-studied, low-nutrient stream (Walker Branch, east Tennessee, USA). Biomass-specific excretion rates of ammonium varied over twofold during the study, coinciding with seasonal changes in food availabilitymore » (measured as gross primary production) and water temperature (multiple linear regression, R 2 = 0.57, P = 0.053). The contribution of ammonium excretion to nutrient cycling varied with seasonal changes in both biological (that is, nutrient uptake rate) and physical (that is, stream flow) variables. On average, ammonium excretion accounted for 58% of stream water ammonium concentrations, 26% of whole-stream nitrogen demand, and 66% of autotrophic nitrogen uptake. Phosphorus excretion by Elimia was contrastingly low throughout the year, supplying only 1% of total dissolved phosphorus concentrations. The high average N:P ratio (89:1) of snail excretion likely exacerbated phosphorus limitation in Walker Branch. To fully characterize animal excretion rates and effects on ecosystem processes, multiple measurements through time are necessary, especially in ecosystems that experience strong seasonality.« less

Temporal variation in the importance of a dominant consumer to stream nutrient cycling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Griffiths, Natalie A.; Hill, Walter

Animal excretion can be a significant nutrient flux within ecosystems, where it supports primary production and facilitates microbial decomposition of organic matter. The effects of excretory products on nutrient cycling have been documented for various species and ecosystems, but temporal variation in these processes is poorly understood. We examined variation in excretion rates of a dominant grazing snail, Elimia clavaeformis, and its contribution to nutrient cycling, over the course of 14 months in a well-studied, low-nutrient stream (Walker Branch, east Tennessee, USA). Biomass-specific excretion rates of ammonium varied over twofold during the study, coinciding with seasonal changes in food availabilitymore » (measured as gross primary production) and water temperature (multiple linear regression, R 2 = 0.57, P = 0.053). The contribution of ammonium excretion to nutrient cycling varied with seasonal changes in both biological (that is, nutrient uptake rate) and physical (that is, stream flow) variables. On average, ammonium excretion accounted for 58% of stream water ammonium concentrations, 26% of whole-stream nitrogen demand, and 66% of autotrophic nitrogen uptake. Phosphorus excretion by Elimia was contrastingly low throughout the year, supplying only 1% of total dissolved phosphorus concentrations. The high average N:P ratio (89:1) of snail excretion likely exacerbated phosphorus limitation in Walker Branch. To fully characterize animal excretion rates and effects on ecosystem processes, multiple measurements through time are necessary, especially in ecosystems that experience strong seasonality.« less

Long-term records reveal decoupling of nitrogen and phosphorus cycles in a large, urban lake in response to an extreme rainfall event

NASA Astrophysics Data System (ADS)

Corman, J. R.; Loken, L. C.; Oliver, S. K.; Collins, S.; Butitta, V.; Stanley, E. H.

2017-12-01

Extreme events can play powerful roles in shifting ecosystem processes. In lakes, heavy rainfall can transport large amounts of particulates and dissolved nutrients into the water column and, potentially, alter biogeochemical cycling. However, the impacts of extreme rainfall events are often difficult to study due to a lack of long-term records. In this paper, we combine daily discharge records with long-term lake water quality information collected by the North Temperate Lakes Long-Term Ecological Research (NTL LTER) site to investigate the impacts of extreme events on nutrient cycling in lakes. We focus on Lake Mendota, an urban lake within the Yahara River Watershed in Madison, Wisconsin, USA, where nutrient data are available at least seasonally from 1995 - present. In June 2008, precipitation amounts in the Yahara watershed were 400% above normal values, triggering the largest discharge event on record for the 40 years of monitoring at the streamgage station; hence, we are able to compare water quality records before and after this event as a case study of how extreme rain events couple or decouple lake nutrient cycling. Following the extreme event, the lake-wide mass of nitrogen and phosphorus increased in the summer of 2008 by 35% and 21%, respectively, shifting lake stoichiometry by increasing N:P ratios (Figure 1). Nitrogen concentrations remained elevated longer than phosphorus, suggesting (1) that nitrogen inputs into the lake were sustained longer than phosphorus (i.e., a "smear" versus "pulse" loading of nitrogen versus phosphorus, respectively, in response to the extreme event) and/or (2) that in-lake biogeochemical processing was more efficient at removing phosphorus compared to nitrogen. While groundwater loading data are currently unavailable to test the former hypothesis, preliminary data from surficial nitrogen and phosphorus loading to Lake Mendota (available for 2011 - 2013) suggest that nitrogen removal efficiency is less than phosphorus, supporting the latter hypothesis. As climate change is expected to increase the frequency of extreme events, continued monitoring of lakes is needed to understand biogeochemical responses and when and how water quality threats may occur.

SUBMERGED MACROPHYTE EFFECTS ON NUTRIENT EXCHANGES IN RIVERINE SEDIMENTS

EPA Science Inventory

Submersed macrophytes are important in nutrient cycling in marine and lacustrine systems, although their role in nutrient exchange in tidally-influenced riverine systems is not well studied. In the laboratory, plants significantly lowered porewater nutrient pools of riverine sedi...

Soil moisture and texture primarily control the soil nutrient stoichiometry across the Tibetan grassland.

PubMed

Tian, Liming; Zhao, Lin; Wu, Xiaodong; Fang, Hongbing; Zhao, Yonghua; Hu, Guojie; Yue, Guangyang; Sheng, Yu; Wu, Jichun; Chen, Ji; Wang, Zhiwei; Li, Wangping; Zou, Defu; Ping, Chien-Lu; Shang, Wen; Zhao, Yuguo; Zhang, Ganlin

2018-05-01

Soil nutrient stoichiometry and its environmental controllers play vital roles in understanding soil-plant interaction and nutrient cycling under a changing environment, while they remain poorly understood in alpine grassland due to lack of systematic field investigations. We examined the patterns and controls of soil nutrients stoichiometry for the top 10cm soils across the Tibetan ecosystems. Soil nutrient stoichiometry varied substantially among vegetation types. Alpine swamp meadow had larger topsoil C:N, C:P, N:P, and C:K ratios compared to the alpine meadow, alpine steppe, and alpine desert. In addition, the presence or absence of permafrost did not significantly impact soil nutrient stoichiometry in Tibetan grassland. Moreover, clay and silt contents explained approximately 32.5% of the total variation in soil C:N ratio. Climate, topography, soil properties, and vegetation combined to explain 10.3-13.2% for the stoichiometry of soil C:P, N:P, and C:K. Furthermore, soil C and N were weakly related to P and K in alpine grassland. These results indicated that the nutrient limitation in alpine ecosystem might shifts from N-limited to P-limited or K-limited due to the increase of N deposition and decrease of soil P and K contents under the changing climate conditions and weathering stages. Finally, we suggested that soil moisture and mud content could be good predictors of topsoil nutrient stoichiometry in Tibetan grassland. Copyright © 2017 Elsevier B.V. All rights reserved.

Belowground Microbiota and the Health of Tree Crops.

PubMed

Mercado-Blanco, Jesús; Abrantes, Isabel; Barra Caracciolo, Anna; Bevivino, Annamaria; Ciancio, Aurelio; Grenni, Paola; Hrynkiewicz, Katarzyna; Kredics, László; Proença, Diogo N

2018-01-01

Trees are crucial for sustaining life on our planet. Forests and land devoted to tree crops do not only supply essential edible products to humans and animals, but also additional goods such as paper or wood. They also prevent soil erosion, support microbial, animal, and plant biodiversity, play key roles in nutrient and water cycling processes, and mitigate the effects of climate change acting as carbon dioxide sinks. Hence, the health of forests and tree cropping systems is of particular significance. In particular, soil/rhizosphere/root-associated microbial communities (known as microbiota) are decisive to sustain the fitness, development, and productivity of trees. These benefits rely on processes aiming to enhance nutrient assimilation efficiency (plant growth promotion) and/or to protect against a number of (a)biotic constraints. Moreover, specific members of the microbial communities associated with perennial tree crops interact with soil invertebrate food webs, underpinning many density regulation mechanisms. This review discusses belowground microbiota interactions influencing the growth of tree crops. The study of tree-(micro)organism interactions taking place at the belowground level is crucial to understand how they contribute to processes like carbon sequestration, regulation of ecosystem functioning, and nutrient cycling. A comprehensive understanding of the relationship between roots and their associate microbiota can also facilitate the design of novel sustainable approaches for the benefit of these relevant agro-ecosystems. Here, we summarize the methodological approaches to unravel the composition and function of belowground microbiota, the factors influencing their interaction with tree crops, their benefits and harms, with a focus on representative examples of Biological Control Agents (BCA) used against relevant biotic constraints of tree crops. Finally, we add some concluding remarks and suggest future perspectives concerning the microbiota-assisted management strategies to sustain tree crops.

Belowground Microbiota and the Health of Tree Crops

PubMed Central

Mercado-Blanco, Jesús; Abrantes, Isabel; Barra Caracciolo, Anna; Bevivino, Annamaria; Ciancio, Aurelio; Grenni, Paola; Hrynkiewicz, Katarzyna; Kredics, László; Proença, Diogo N.

2018-01-01

Trees are crucial for sustaining life on our planet. Forests and land devoted to tree crops do not only supply essential edible products to humans and animals, but also additional goods such as paper or wood. They also prevent soil erosion, support microbial, animal, and plant biodiversity, play key roles in nutrient and water cycling processes, and mitigate the effects of climate change acting as carbon dioxide sinks. Hence, the health of forests and tree cropping systems is of particular significance. In particular, soil/rhizosphere/root-associated microbial communities (known as microbiota) are decisive to sustain the fitness, development, and productivity of trees. These benefits rely on processes aiming to enhance nutrient assimilation efficiency (plant growth promotion) and/or to protect against a number of (a)biotic constraints. Moreover, specific members of the microbial communities associated with perennial tree crops interact with soil invertebrate food webs, underpinning many density regulation mechanisms. This review discusses belowground microbiota interactions influencing the growth of tree crops. The study of tree-(micro)organism interactions taking place at the belowground level is crucial to understand how they contribute to processes like carbon sequestration, regulation of ecosystem functioning, and nutrient cycling. A comprehensive understanding of the relationship between roots and their associate microbiota can also facilitate the design of novel sustainable approaches for the benefit of these relevant agro-ecosystems. Here, we summarize the methodological approaches to unravel the composition and function of belowground microbiota, the factors influencing their interaction with tree crops, their benefits and harms, with a focus on representative examples of Biological Control Agents (BCA) used against relevant biotic constraints of tree crops. Finally, we add some concluding remarks and suggest future perspectives concerning the microbiota-assisted management strategies to sustain tree crops. PMID:29922245

Modelling carbon and nitrogen turnover in variably saturated soils

NASA Astrophysics Data System (ADS)

Batlle-Aguilar, J.; Brovelli, A.; Porporato, A.; Barry, D. A.

2009-04-01

Natural ecosystems provide services such as ameliorating the impacts of deleterious human activities on both surface and groundwater. For example, several studies have shown that a healthy riparian ecosystem can reduce the nutrient loading of agricultural wastewater, thus protecting the receiving surface water body. As a result, in order to develop better protection strategies and/or restore natural conditions, there is a growing interest in understanding ecosystem functioning, including feedbacks and nonlinearities. Biogeochemical transformations in soils are heavily influenced by microbial decomposition of soil organic matter. Carbon and nutrient cycles are in turn strongly sensitive to environmental conditions, and primarily to soil moisture and temperature. These two physical variables affect the reaction rates of almost all soil biogeochemical transformations, including microbial and fungal activity, nutrient uptake and release from plants, etc. Soil water saturation and temperature are not constants, but vary both in space and time, thus further complicating the picture. In order to interpret field experiments and elucidate the different mechanisms taking place, numerical tools are beneficial. In this work we developed a 3D numerical reactive-transport model as an aid in the investigation the complex physical, chemical and biological interactions occurring in soils. The new code couples the USGS models (MODFLOW 2000-VSF, MT3DMS and PHREEQC) using an operator-splitting algorithm, and is a further development an existing reactive/density-dependent flow model PHWAT. The model was tested using simplified test cases. Following verification, a process-based biogeochemical reaction network describing the turnover of carbon and nitrogen in soils was implemented. Using this tool, we investigated the coupled effect of moisture content and temperature fluctuations on nitrogen and organic matter cycling in the riparian zone, in order to help understand the relative sensitivity of biological transformations to these processes.

Influence of soil structure on nutrient cycling using microfluidic techniques

NASA Astrophysics Data System (ADS)

Arellano Caicedo, Carlos; Aleklett, Kristin; Ohlsson, Pelle; Hammer, Edith

2017-04-01

The rising of atmospheric CO2 levels and its effects on global warming make it necessary to understand the elements that regulate such levels and furthermore try to slow down the CO2 accumulation in the atmosphere. The exchange of carbon between soil and atmosphere plays a significant role in the atmospheric carbon budget. Soil organisms deposit organic compounds on and in soil aggregates, either as exudates or dead remains. Much of this dead organic material is quickly recycled, but a portion, however, will stay in the soil for long term. Evidence suggests that micro-scale biogeochemical interactions could play a highly significant role in degradation or persistence of organic matter in soils, thus, soil physical structure might play a decisive role in preventing accessibility of nutrients to microorganisms. For studying effects of spatial microstructure on soil nutrient cycles, we have constructed artificial habitats for microbes that simulate soil structures. Microfluidic, so called Lab-on-a-chip technologies, are one of the tools used to achieve our purpose. Such micro-habitats consist of pillar structures of difference density and surface area, tunnels with increasing depth, and mazes of increasing complexity to simulate different stages of soil aggregation. Using microscopy and analytical chemistry, we can follow the growth of microorganisms inoculated into the "soil chip" as well as the chemical degradation of organic matter compounds provided as nutrient source. In this way, we want to be able to predict how soil structure influences soil microbial activity leading to different effects on the carbon cycle. Our first results of a chip inoculated with natural soil showed a succession of organisms colonizing channels leading to dead-end arenas, starting with a high presence of bacteria inside the chip during the first days. Fungal hyphae growth gradually inside the channels until it finally occupied the big majority of the spaces isolating bacteria which dramatically decreased in number. The structure inside the soil chip changes dynamically due to the creation of biofilms. Such changes alter the spatial distribution inside the chip gradually, to the point of getting significantly different from the original structures. Fungal hyphae, bacterial biofilms, and microbial necro mass accumulation where the components altering the chip structure. These findings suggest that a considerable part of the soil structure is microbial biomass. Using Lab-on-a-chip techniques leads to the creation of a much more realistic soil and ecosystem model, resembling spatial and chemical complexity in real soil structures at a micrometer scale, the scale relevant for soil organisms. Understanding small-scale processes in the soils is crucial to predict carbon and nutrient cycling, and to enable us to give recommendations for soil management in agriculture, horticulture and nature conservation. If parameterization of soil structure as a central determinant for carbon sequestration is possible, it will allow strong argumentation for management practices that conserve and foster soil structure, such as low-tillage, support of mycorrhizal fungi, and reduction of heavy machinery usage.

The impact of biotic/abiotic interfaces in mineral nutrient cycling: A study of soils of the Santa Cruz chronosequence, California

USGS Publications Warehouse

White, A.F.; Schulz, M.S.; Vivit, D.V.; Bullen, T.D.; Fitzpatrick, J.

2012-01-01

Biotic/abiotic interactions between soil mineral nutrients and annual grassland vegetation are characterized for five soils in a marine terrace chronosequence near Santa Cruz, California. A Mediterranean climate, with wet winters and dry summers, controls the annual cycle of plant growth and litter decomposition, resulting in net above-ground productivities of 280-600gm -2yr -1. The biotic/abiotic (A/B) interface separates seasonally reversible nutrient gradients, reflecting biological cycling in the shallower soils, from downward chemical weathering gradients in the deeper soils. The A/B interface is pedologically defined by argillic clay horizons centered at soil depths of about one meter which intensify with soil age. Below these horizons, elevated solute Na/Ca, Mg/Ca and Sr/Ca ratios reflect plagioclase and smectite weathering along pore water flow paths. Above the A/B interface, lower cation ratios denote temporal variability due to seasonal plant nutrient uptake and litter leaching. Potassium and Ca exhibit no seasonal variability beneath the A/B interface, indicating closed nutrient cycling within the root zone, whereas Mg variability below the A/B interface denotes downward leakage resulting from higher inputs of marine aerosols and lower plant nutrient requirements.The fraction of a mineral nutrient annually cycled through the plants, compared to that lost from pore water discharge, is defined their respective fluxes F j,plants=q j,plants/(q j,plants+q j,discharge) with average values for K and Ca (F K,plants=0.99; F Ca,plants=0.93) much higher than for Mg and Na (F Mg,plants 0.64; F Na,plants=0.28). The discrimination against Rb and Sr by plants is described by fractionation factors (K Sr/Ca=0.86; K Rb/K=0.83) which are used in Rayleigh fractionation-mixing calculations to fit seasonal patterns in solute K and Ca cycling. K Rb/K and K24Mg/22Mg values (derived from isotope data in the literature) fall within fractionation envelopes bounded by inputs from rainfall and mineral weathering. K Sr/Ca and K44Ca/40Ca fractionation factors fall outside these envelopes indicating that Ca nutrient cycling is closed to these external inputs. Small net positive K and Ca fluxes (6-14molm -2yr -1), based on annual mass balances, indicate that the soils are accumulating mineral nutrients, probably as a result of long-term environmental disequilibrium. ?? 2011.

Nutrient cycling for biomass: Interactive proteomic/transcriptomic networks for global carbon management processes within poplar-mycorrhizal interactions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cseke, Leland

This project addresses the need to develop system-scale models at the symbiotic interface between ectomycorrhizal fungi (Laccaria bicolor) and tree species (Populus tremuloides) in response to environmental nutrient availability / biochemistry. Using our now well-established laboratory Laccaria x poplar system, we address the hypothesis that essential regulatory and metabolic mechanisms can be inferred from genomic, transcriptomic and proteomic-level changes that occur in response to environmental nutrient availability. The project addresses this hypothesis by applying state-of-the-art protein-level analytic approaches to fill the gap in our understanding of how mycorrhizal regulatory and metabolic processes at the transcript-level translate to nutrient uptake, carbonmore » management and ultimate net primary productivity of plants. In most cases, these techniques were not previously optimized for poplar trees or Laccaria. Thus, one of the major contributions of this project has been to provide avenues for new research in these species by overcoming the pitfalls that had previously prevented the use of techniques such as ChIP-Seq and SWATH-proteomics. Since it is the proteins that sense and interact with the environment, participate in signal cascades, activate and regulate gene expression, perform the activities of metabolism and ultimately sequester carbon and generate biomass, an understanding of protein activities during symbiosis-linked nutrient uptake is critical to any systems-level approach that links metabolic processes to the environment. This project uses a team of experts at The University of Alabama in Huntsville (UAH), The University of Alabama at Birmingham (UAB) and Argonne National Laboratory (ANL) to address the above hypothesis using a multiple "omics" approach that combines gene and protein expression as well as protein modifications, and biochemical analyses (performed at Brookhaven National Laboratory (BNL)) in poplar trees under mycorrhizal and free living conditions. Together, the assembled team of experts completed all of the planned milestones set forth in this project. In addition to the planned approaches, several lines of exciting new research have also evolved during the course of this project that involved FTIR Imaging using the National Synchrotron Light Source at BNL. A summary of the approaches used in this project and key highlights are as follows: Having the right combination of microbes associated with plants is largely responsible for the plant’s ability to mine nutrients from the soil and to develop a strong “immune system”. Our current chemically focused and intensive culture tends to forget that plants obtain nutrients in two ways: (1) via water soluble chemical nutrients and (2) via the activity of acquired microbial symbionts. In healthy natural ecosystems, chemical nutrients are always in low abundance because the organisms within that system have already locked such nutrients away within the biological system itself. Thus, in nature it is the biological sources of nutrients and the microbes that have the capacity to mine those nutrients for their plant hosts that actually control the terrestrial nutrient cycles on this planet. Thus, a new push in the future may very well be to use our skills at elucidating complex patterns to strategically guide soil microbe communities to do what we want, essentially allowing nature to do the work of figuring out what is most efficient and effective for human needs. However, the findings of this project and other work in our lab lead to the hypothesis that the specific soil community composition is less important than the emergent properties of those communities. So, additional research into what soil communities are effective and how they are established will be key in developing human understanding of how to manipulate biological systems to meet human needs without causing undue damage to our environment.« less

A global database of nitrogen and phosphorus excretion rates of aquatic animals

USDA-ARS?s Scientific Manuscript database

Animals can be important in modulating ecosystem-level nutrient cycling, although their importance varies greatly among species and ecosystems. Nutrient cycling rates of individual animals represent valuable data for testing the predictions of important frameworks such as the Metabolic Theory of Eco...

Long term continuous field survey to assess nutrient emission impact from irrigated paddy field into river catchment

NASA Astrophysics Data System (ADS)

Kogure, Kanami; Aichi, Masaatsu; Zessner, Matthias

2017-04-01

In order to achieve good river environment, it is very important to understand and to control nutrient behavior such as Nitrogen and Phosphorus. As we could reduce impact from urban and industrial activities by wastewater treatment, pollution from point sources are likely to be controlled. Besides them, nutrient emission from agricultural activity is dominant pollution source into the river system. In many countries in Asia and Africa, rice is widely cultivated and paddy field covers large areas. In Japan 54% of its arable land is occupied with irrigated paddy field. While paddy field can deteriorate river water quality due to fertilization, it is also suggested that paddy field can purify water. We carried out field survey in middle reach of the Tone River Basin with focus on a paddy field IM. The objectives of the research are 1) understanding of water and nutrient balance in paddy field, 2) data collection for assessing nutrient emission. Field survey was conducted from June 2015 to October 2016 covering two flooding seasons in summer. In our measurement, all input and output were measured regarding water, N and P to quantify water and nutrient balance in the paddy field. By measuring water quality and flow rate of inflow, outflow, infiltrating water, ground water and flooding water, we tried to quantitatively understand water, N and P cycle in a paddy field including seasonal trends, and changes accompanied with rainy events and agricultural activities like fertilization. Concerning water balance, infiltration rate was estimated by following equation. Infiltration=Irrigation water + Precipitation - Evapotranspiration -Outflow We estimated mean daily water balance during flooding season. Infiltration is 11.9mm/day in our estimation for summer in 2015. Daily water reduction depth (WRD) is sum of Evapotranspiration and Infiltration. WRD is 21.5mm/day in IM and agrees with average value in previous research. Regarding nutrient balance, we estimated an annual N and P balance. N and P surplus are calculated by difference between input and output in a paddy field. As to nutrient balance in 2015 surplus shows minus value between input as fertilizer and output as rice product. However, by taking account of input via irrigation water as nutrient source, N and P input and output balance with errors by 9% and 14%. Results of long term continuous survey suggest that irrigation water is one of nutrient sources in rice cultivation.

Managing urban nutrient biogeochemistry for sustainable urbanization.

PubMed

Lin, Tao; Gibson, Valerie; Cui, Shenghui; Yu, Chang-Ping; Chen, Shaohua; Ye, Zhilong; Zhu, Yong-Guan

2014-09-01

Urban ecosystems are unique in the sense that human activities are the major drivers of biogeochemical processes. Along with the demographic movement into cities, nutrients flow towards the urban zone (nutrient urbanization), causing the degradation of environmental quality and ecosystem health. In this paper, we summarize the characteristics of nutrient cycling within the urban ecosystem compared to natural ecosystems. The dynamic process of nutrient urbanization is then explored taking Xiamen city, China, as an example to examine the influence of rapid urbanization on food sourced nitrogen and phosphorus metabolism. Subsequently, the concept of a nutrient footprint and calculation method is introduced from a lifecycle perspective. Finally, we propose three system approaches to mend the broken biogeochemical cycling. Our study will contribute to a holistic solution which achieves synergies between environmental quality and food security, by integrating technologies for nutrient recovery and waste reduction. Copyright © 2014 Elsevier Ltd. All rights reserved.

Opposing effects of different soil organic matter fractions on crop yields.

PubMed

Wood, Stephen A; Sokol, Noah; Bell, Colin W; Bradford, Mark A; Naeem, Shahid; Wallenstein, Matthew D; Palm, Cheryl A

2016-10-01

Soil organic matter is critical to sustainable agriculture because it provides nutrients to crops as it decomposes and increases nutrient- and water-holding capacity when built up. Fast- and slow-cycling fractions of soil organic matter can have different impacts on crop production because fast-cycling fractions rapidly release nutrients for short-term plant growth and slow-cycling fractions bind nutrients that mineralize slowly and build up water-holding capacity. We explored the controls on these fractions in a tropical agroecosystem and their relationship to crop yields. We performed physical fractionation of soil organic matter from 48 farms and plots in western Kenya. We found that fast-cycling, particulate organic matter was positively related to crop yields, but did not have a strong effect, while slower-cycling, mineral-associated organic matter was negatively related to yields. Our finding that slower-cycling organic matter was negatively related to yield points to a need to revise the view that stabilization of organic matter positively impacts food security. Our results support a new paradigm that different soil organic matter fractions are controlled by different mechanisms, potentially leading to different relationships with management outcomes, like crop yield. Effectively managing soils for sustainable agriculture requires quantifying the effects of specific organic matter fractions on these outcomes. © 2016 by the Ecological Society of America.

Development of Denitrifying and Nitrifying Bacteria and Their Co-occurrence in Newly Created Biofilms in Urban Streams

NASA Astrophysics Data System (ADS)

Vaessen, T. N.; Martí Roca, E.; Pinay, G.; Merbt, S. N.

2015-12-01

Biofilms play a pivotal role on nutrient cycling in streams, which ultimately dictates the export of nutrients to downstream ecosystems. The extent to which biofilms influence the concentration of dissolved nutrients, oxygen and pH in the water column may be determined by the composition of the microbial assemblages and their activity. Evidence of biological interactions among bacteria and algae are well documented. However, the development, succession and co-occurence of nitrifying and denitrifying bacteria remain poorly understood. These bacteria play a relevant role on the biogeochemical process associated to N cycling, and their relative abundance can dictate the fate of dissolved inorganic nitrogen in streams. In particular, previous studies indicated that nitrifiers are enhanced in streams receiving inputs from wastewater treatment plant (WWTP) effluents due to both increases in ammonium concentration and inputs of nitrifiers. However, less is known about the development of denitrifiers in receiving streams, although environmental conditions seem to favor it. We conducted an in situ colonization experiment in a stream receiving effluent from a WWTP to examine how this input influences the development and co-occurrence of nitrifying and denitrifying bacteria. We placed artificial substrata at different locations relative to the effluent and sampled them over time to characterize the developed biofilm in terms of bulk measurements (organic matter content and algae) as well as in terms of abundance of nitrifiers and denitrifiers (using qPCR). The results of this study contribute to a better understanding of the temporal dynamics of denitrifiers and nitrifiers in relation to the developed organic matter, dissolved oxygen and pH and the biomass accrual in stream biofilms under the influence of nutrients inputs from WWTP effluent. Ultimately, the results provide insights on the potential role of nitrifiers and denitrifiers on N cycling in WWTP effluent receiving streams.

Wildfires and geochemical change in a subalpine forest over the past six millennia

NASA Astrophysics Data System (ADS)

Leys, Bérangère; Higuera, Philip E.; McLauchlan, Kendra K.; Dunnette, Paul V.

2016-12-01

The frequency of large wildfires in western North America has been increasing in recent decades, yet the geochemical impacts of these events are poorly understood. The multidecadal timescales of both disturbance-regime variability and ecosystem responses make it challenging to study the effects of fire on terrestrial nutrient cycling. Nonetheless, disturbance-mediated changes in nutrient concentrations could ultimately limit forest productivity over centennial to millennial time scales. Here, we use a novel approach that combines quantitative elemental analysis of lake sediments using x-ray fluorescence to assess the geochemical impacts of high-severity fires in a 6200 year long sedimentary record from a small subalpine lake in Rocky Mountain National Park, Colorado, USA. Immediately after 17 high-severity fires, the sedimentary concentrations of five elements increased (Ti, Ca, K, Al, and P), but returned to pre-fire levels within three decades. Multivariate analyses indicate that erosion of weathered mineral material from the catchment is a primary mechanism though which high-severity fires impact element cycling. A longer-term trend in sediment geochemistry was also identified over millennial time scales. This decrease in the concentrations of six elements (Al, Si, K, Ti, Mn, and Fe) over the past 6200 years may have been due to a decreased rate of high-severity fires, long-term ecosystem development, or changes in precipitation regime. Our results indicate that high-severity fire events can determine elemental concentrations in subalpine forests. The degree of variability in geochemical response across time scales suggests that shifting rates of high-severity burning can cause significant changes in key rock-derived nutrients. To our knowledge, these results are the first to reveal repeated loss of rock-derived nutrients from the terrestrial ecosystem due to high-severity fires. Understanding the future of fire-prone coniferous forests requires further documentation and quantification of this important mechanism linking fire regimes and biogeochemical cycles.

The afterlife of interspecific indirect genetic effects: genotype interactions alter litter quality with consequences for decomposition and nutrient dynamics.

PubMed

Genung, Mark A; Bailey, Joseph K; Schweitzer, Jennifer A

2013-01-01

Aboveground-belowground linkages are recognized as divers of community dynamics and ecosystem processes, but the impacts of plant-neighbor interactions on these linkages are virtually unknown. Plant-neighbor interactions are a type of interspecific indirect genetic effect (IIGE) if the focal plant's phenotype is altered by the expression of genes in a neighboring heterospecific plant, and IIGEs could persist after plant senescence to affect ecosystem processes. This perspective can provide insight into how plant-neighbor interactions affect evolution, as IIGEs are capable of altering species interactions and community composition over time. Utilizing genotypes of Solidago altissima and Solidago gigantea, we experimentally tested whether IIGEs that had affected living focal plants would affect litter decomposition rate, as well as nitrogen (N) and phosphorous (P) dynamics after the focal plant senesced. We found that species interactions affected N release and genotype interactions affected P immobilization. From a previous study we knew that neighbor genotype influenced patterns of biomass allocation for focal plants. Here we extend those previous results to show that these changes in biomass allocation altered litter quality, that then altered rates of decomposition and nutrient cycling. Our results provide insights into above- and belowground linkages by showing that, through their effects on plant litter quality (e.g., litter lignin:N), IIGEs can have afterlife effects, tying plant-neighbor interactions to ecosystem processes. This holistic approach advances our understanding of decomposition and nutrient cycling by showing that evolutionary processes (i.e., IIGEs) can influence ecosystem functioning after plant senescence. Because plant traits are determined by the combined effects of genetic and environmental influences, and because these traits are known to affect decomposition and nutrient cycling, we suggest that ecosystem processes can be described as gene-less products of genetic interactions among the species comprising ecological communities.

The Afterlife of Interspecific Indirect Genetic Effects: Genotype Interactions Alter Litter Quality with Consequences for Decomposition and Nutrient Dynamics

PubMed Central

Genung, Mark A.; Bailey, Joseph K.; Schweitzer, Jennifer A.

2013-01-01

Aboveground-belowground linkages are recognized as divers of community dynamics and ecosystem processes, but the impacts of plant-neighbor interactions on these linkages are virtually unknown. Plant-neighbor interactions are a type of interspecific indirect genetic effect (IIGE) if the focal plant’s phenotype is altered by the expression of genes in a neighboring heterospecific plant, and IIGEs could persist after plant senescence to affect ecosystem processes. This perspective can provide insight into how plant-neighbor interactions affect evolution, as IIGEs are capable of altering species interactions and community composition over time. Utilizing genotypes of Solidago altissima and Solidago gigantea, we experimentally tested whether IIGEs that had affected living focal plants would affect litter decomposition rate, as well as nitrogen (N) and phosphorous (P) dynamics after the focal plant senesced. We found that species interactions affected N release and genotype interactions affected P immobilization. From a previous study we knew that neighbor genotype influenced patterns of biomass allocation for focal plants. Here we extend those previous results to show that these changes in biomass allocation altered litter quality, that then altered rates of decomposition and nutrient cycling. Our results provide insights into above- and belowground linkages by showing that, through their effects on plant litter quality (e.g., litter lignin:N), IIGEs can have afterlife effects, tying plant-neighbor interactions to ecosystem processes. This holistic approach advances our understanding of decomposition and nutrient cycling by showing that evolutionary processes (i.e., IIGEs) can influence ecosystem functioning after plant senescence. Because plant traits are determined by the combined effects of genetic and environmental influences, and because these traits are known to affect decomposition and nutrient cycling, we suggest that ecosystem processes can be described as gene-less products of genetic interactions among the species comprising ecological communities. PMID:23349735

A Coupled Epipelagic-Meso/Bathypelagic Particle Flux Model for the Bermuda Atlantic Time-series Station (BATS)/Oceanic Flux Program (OFP) Site

NASA Astrophysics Data System (ADS)

Glover, D. M.; Conte, M.

2002-12-01

Of considerable scientific interest is the role remineralization plays in the global carbon cycle. It is the ``biological pump'' that fixes carbon in the upper water column and exports it for long time periods to the deep ocean. From a global carbon cycle point-of-view, it is the processes that govern remineralization in the mid- to deep-ocean waters that provide the feedback to the biogeochemical carbon cycle. In this study we construct an ecosystem model that serves as a mechanistic link between euphotic processes and mesopelagic and bathypelagic processes. We then use this prognostic model to further our understanding of the unparalleled time-series of deep-water sediment traps (21+ years) at the Oceanic Flux Program (OFP) and the euphotic zone measurements (10+ years) at the Bermuda Atlantic Time-series Site (BATS). At the core of this mechanistic ecosystem model of the mesopelagic zone is a model that consists of an active feeding habit zooplankton, a passive feeding habit zooplankton, large detritus (sinks), small detritus (non-sinking), and a nutrient pool. As the detritus, the primary source of food, moves through the water column it is fed upon by the active/passive zooplankton pair and undergoes bacterially mediated remineralization into nutrients. The large detritus pool at depth gains material from the formation of fecal pellets from the passive and active zooplankton. Sloppy feeding habits of the active zooplankton contribute to the small detrital pool. Zooplankton mortality (both classes) also contribute directly to the large detritus pool. Aggregation and disaggregation transform detrital particles from one pool to the other and back again. The nutrients at each depth will gain from detrital remineralization and zooplankton excretion. The equations that model the active zooplankton, passive zooplankton, large detritus, small detritus, and nutrients will be reviewed, results shown and future model modifications discussed.

[The impact of human activities on the dynamics of phosphorus in the environment and its effect on public health].

PubMed

de Quevedo, Claudia Maria Gomes; Paganini, Wanderley da Silva

2011-08-01

Phosphorus is a nutrient with finite and non-renewable sources, the speed of exploitation of which is currently far higher than the rates of return to its natural cycle. It is already being predicted that available and known sources will soon be exhausted, with serious and irreversible economic, social and environmental impacts. In this context, this study sets out to present information about the dynamics of phosphorus in the environment, assessing the impacts caused by human activities and establishing what actions might contribute to preservation of the nutrient cycle. To contribute to enhanced understanding of the topic, the evolution of data on population density, the number of industries and the extension of cultivated areas in a river basin, was studied over 22 years in relation to concentrations of phosphorus in water and sediment. The Tietê River was used for the case study. The results revealed that the control of domestic effluent, especially the amount of sodium tripolyphosphate (STPP) used in detergents and soap products, is of major importance for improving water quality, ensuring environmental protection and safeguarding public health.

Elucidating the nutritional dynamics of fungi using stable isotopes.

PubMed

Mayor, Jordan R; Schuur, Edward A G; Henkel, Terry W

2009-02-01

Mycorrhizal and saprotrophic (SAP) fungi are essential to terrestrial element cycling due to their uptake of mineral nutrients and decomposition of detritus. Linking these ecological roles to specific fungi is necessary to improve our understanding of global nutrient cycling, fungal ecophysiology, and forest ecology. Using discriminant analyses of nitrogen (delta(15)N) and carbon (delta(13)C) isotope values from 813 fungi across 23 sites, we verified collector-based categorizations as either ectomycorrhizal (ECM) or SAP in > 91% of the fungi, and provided probabilistic assignments for an additional 27 fungi of unknown ecological role. As sites ranged from boreal tundra to tropical rainforest, we were able to show that fungal delta(13)C (26 sites) and delta(15)N (32 sites) values could be predicted by climate or latitude as previously shown in plant and soil analyses. Fungal delta(13)C values are likely reflecting differences in C-source between ECM and SAP fungi, whereas (15)N enrichment of ECM fungi relative to SAP fungi suggests that ECM fungi are consistently delivering (15)N depleted N to host trees across a range of ecosystem types.

Ectomycorrhizal-dominated boreal and tropical forests have distinct fungal communities, but analogous spatial patterns across soil horizons.

PubMed

McGuire, Krista L; Allison, Steven D; Fierer, Noah; Treseder, Kathleen K

2013-01-01

Fungi regulate key nutrient cycling processes in many forest ecosystems, but their diversity and distribution within and across ecosystems are poorly understood. Here, we examine the spatial distribution of fungi across a boreal and tropical ecosystem, focusing on ectomycorrhizal fungi. We analyzed fungal community composition across litter (organic horizons) and underlying soil horizons (0-20 cm) using 454 pyrosequencing and clone library sequencing. In both forests, we found significant clustering of fungal communities by site and soil horizons with analogous patterns detected by both sequencing technologies. Free-living saprotrophic fungi dominated the recently-shed leaf litter and ectomycorrhizal fungi dominated the underlying soil horizons. This vertical pattern of fungal segregation has also been found in temperate and European boreal forests, suggesting that these results apply broadly to ectomycorrhizal-dominated systems, including tropical rain forests. Since ectomycorrhizal and free-living saprotrophic fungi have different influences on soil carbon and nitrogen dynamics, information on the spatial distribution of these functional groups will improve our understanding of forest nutrient cycling.

The Impact of Nitrogen Limitation and Mycorrhizal Symbiosis on Aspen Tree Growth and Development

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tran, Bich Thi Ngoc

Nitrogen deficiency is the most common and widespread nutritional deficiency affecting plants worldwide. Ectromycorrhizal symbiosis involves the beneficial interaction of plants with soil fungi and plays a critical role in nutrient cycling, including the uptake of nitrogen from the environment. The main goal of this study is to understand how limiting nitrogen in the presence or absence of an ectomycorrhizal fungi, Laccaria bicolor, affects the health of aspen trees, Populus temuloides.

Differences in ecosystem carbon distribution and nutrient cycling linked to forest tree species composition in a mid-successional boreal forest

USGS Publications Warehouse

Melvin, April M.; Mack, Michelle C.; Johnstone, Jill F.; McGuire, A. David; Genet, Helene; Schuur, Edward A.G.

2015-01-01

In the boreal forest of Alaska, increased fire severity associated with climate change is expanding deciduous forest cover in areas previously dominated by black spruce (Picea mariana). Needle-leaf conifer and broad-leaf deciduous species are commonly associated with differences in tree growth, carbon (C) and nutrient cycling, and C accumulation in soils. Although this suggests that changes in tree species composition in Alaska could impact C and nutrient pools and fluxes, few studies have measured these linkages. We quantified C, nitrogen, phosphorus, and base cation pools and fluxes in three stands of black spruce and Alaska paper birch (Betula neoalaskana) that established following a single fire event in 1958. Paper birch consistently displayed characteristics of more rapid C and nutrient cycling, including greater aboveground net primary productivity, higher live foliage and litter nutrient concentrations, and larger ammonium and nitrate pools in the soil organic layer (SOL). Ecosystem C stocks (aboveground + SOL + 0–10 cm mineral soil) were similar for the two species; however, in black spruce, 78% of measured C was found in soil pools, primarily in the SOL, whereas aboveground biomass dominated ecosystem C pools in birch forest. Radiocarbon analysis indicated that approximately one-quarter of the black spruce SOL C accumulated prior to the 1958 fire, whereas no pre-fire C was observed in birch soils. Our findings suggest that tree species exert a strong influence over C and nutrient cycling in boreal forest and forest compositional shifts may have long-term implications for ecosystem C and nutrient dynamics.

Understanding the Differences in the Nitrogen Cycle in the Seasonal Low-Oxygen Zone in the Saanich Inlet of Vancouver Island, British Columbia.

NASA Astrophysics Data System (ADS)

Wood, C.; Forbes, M. S.

2017-12-01

Ocean Oxygen Deficient Zones (ODZs) are found in specific regions around the globe. ODZs generally form from upwelling of nutrient-rich waters, which drives oxygen consumption. The Saanich Inlet in British Columbia, Canada, is an ODZ, as it experiences oxygen consumption due to its unique topography, where a sill at its entrance prevents mixing with the surrounding ocean for much of the year. Due to this, oxygen and nitrate are consumed but not replenished until winter and spring, when the higher-velocity oxygen rich waters cycle the water. Our objective is to understand this cycle via the δ15N and δ18O analysis of NO3 and NO2 isotopes in conjunction with concentration data. Samples were collected bi-monthly over a 7-month period between September 2016 to March 2017. Initial oxygen readings were conducted on the cruise, as well as conductivity, depth, and position. Over the summer, data has been collected and analyzed on most NO3 samples from the trip. Oxygen levels generally decreased with depth, with a dramatic change (200 to 10 µM) at approximately 100 m. Concentrations of NO3 follow a similar trend, decreasing at this point from 20 to less than 5 µM. Conversely, δ15N and δ18O become more enriched at these lower depths, reaching values of 40.97 ‰ and 31.86 ‰, respectively. During the first half of the sample period, some detectable concentrations of NO2 were identified. In the second half, NO2 was not identified. This preliminary data suggests the presence of denitrification occurring in the inlet throughout the fall and winter period and is most likely a combination of water column and sedimentary denitrification. Data towards the end of the sampling period suggest possible completion of denitrification and a likely influx of nutrient rich waters. We will apply this data set to continue to analyze and explore the effects of low oxygen levels on these nitrogen cycle processes with further analysis of isotope data, to further understand the relationships.

Long- and short-term changes in nutrient availability following commercial sawlog harvest via cable logging

Treesearch

Jennifer Knoepp; Wayne Swank; Bruce L. Haines

2014-01-01

Soil nutrient availability often limits forest productivity and soils have considerable variation in their ability to supply nutrients. Most southern Appalachian forests are minimally managed with no fertilizer inputs or routine thinning regime. Nutrient availability is regulated by atmospheric inputs and the internal cycling of nutrients through such processes as...

Dominant mycorrhizal association of trees alters carbon and nutrient cycling by selecting for microbial groups with distinct enzyme function.

PubMed

Cheeke, Tanya E; Phillips, Richard P; Brzostek, Edward R; Rosling, Anna; Bever, James D; Fransson, Petra

2017-04-01

While it is well established that plants associating with arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi cycle carbon (C) and nutrients in distinct ways, we have a limited understanding of whether varying abundance of ECM and AM plants in a stand can provide integrative proxies for key biogeochemical processes. We explored linkages between the relative abundance of AM and ECM trees and microbial functioning in three hardwood forests in southern Indiana, USA. Across each site's 'mycorrhizal gradient', we measured fungal biomass, fungal : bacterial (F : B) ratios, extracellular enzyme activities, soil carbon : nitrogen ratio, and soil pH over a growing season. We show that the percentage of AM or ECM trees in a plot promotes microbial communities that both reflect and determine the C to nutrient balance in soil. Soils dominated by ECM trees had higher F : B ratios and more standing fungal biomass than AM stands. Enzyme stoichiometry in ECM soils shifted to higher investment in extracellular enzymes needed for nitrogen and phosphorus acquisition than in C-acquisition enzymes, relative to AM soils. Our results suggest that knowledge of mycorrhizal dominance at the stand or landscape scale may provide a unifying framework for linking plant and microbial community dynamics, and predicting their effects on ecological function. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Wastewater influences nitrogen dynamics in a coastal catchment during a prolonged drought

PubMed Central

Hoellein, Timothy J.; Mooney, Rae F.; Gardner, Wayne S.; Buskey, Edward J.

2017-01-01

Abstract Ecosystem function measurements can enhance our understanding of nitrogen (N) delivery in coastal catchments across river and estuary ecosystems. Here, we contrast patterns of N cycling and export in two rivers, one heavily influenced by wastewater treatment plants (WWTP), in a coastal catchment of south Texas. We measured N export from both rivers to the estuary over 2 yr that encompass a severe drought, along with detailed mechanisms of N cycling in river, tidal river, and two estuary sites during prolonged drought. WWTP nutrient inputs stimulated uptake of N, but denitrification resulting in permanent N removal accounted for only a small proportion of total uptake. During drought periods, WWTP N was the primary source of exported N to the estuary, minimizing the influence of episodic storm‐derived nutrients from the WWTP‐influenced river to the estuary. In the site without WWTP influence, the river exported very little N during drought, so storm‐derived nutrient pulses were important for delivering N loads to the estuary. Overall, N is processed from river to estuary, but sustained WWTP‐N loads and periodic floods alter the timing of N delivery and N processing. Research that incorporates empirical measurements of N fluxes from river to estuary can inform management needs in the face of multiple anthropogenic stressors such as demand for freshwater and eutrophication. PMID:29263559

Non-Redfieldian Dynamics Explain Seasonal pCO2 Drawdown in the Gulf of Bothnia

NASA Astrophysics Data System (ADS)

Fransner, Filippa; Gustafsson, Erik; Tedesco, Letizia; Vichi, Marcello; Hordoir, Robinson; Roquet, Fabien; Spilling, Kristian; Kuznetsov, Ivan; Eilola, Kari; Mörth, Carl-Magnus; Humborg, Christoph; Nycander, Jonas

2018-01-01

High inputs of nutrients and organic matter make coastal seas places of intense air-sea CO2 exchange. Due to their complexity, the role of coastal seas in the global air-sea CO2 exchange is, however, still uncertain. Here, we investigate the role of phytoplankton stoichiometric flexibility and extracellular DOC production for the seasonal nutrient and CO2 partial pressure (pCO2) dynamics in the Gulf of Bothnia, Northern Baltic Sea. A 3-D ocean biogeochemical-physical model with variable phytoplankton stoichiometry is for the first time implemented in the area and validated against observations. By simulating non-Redfieldian internal phytoplankton stoichiometry, and a relatively large production of extracellular dissolved organic carbon (DOC), the model adequately reproduces observed seasonal cycles in macronutrients and pCO2. The uptake of atmospheric CO2 is underestimated by 50% if instead using the Redfield ratio to determine the carbon assimilation, as in other Baltic Sea models currently in use. The model further suggests, based on the observed drawdown of pCO2, that observational estimates of organic carbon production in the Gulf of Bothnia, derived with the 14C method, may be heavily underestimated. We conclude that stoichiometric variability and uncoupling of carbon and nutrient assimilation have to be considered in order to better understand the carbon cycle in coastal seas.

Late Pleistocene climate change, nutrient cycling, and the megafaunal extinctions in North America

NASA Astrophysics Data System (ADS)

Faith, J. Tyler

2011-06-01

This study proposes an ecological mechanism for the terminal Pleistocene population collapse and subsequent extinction of North American megafauna. Observations of modern ecosystems indicate that feedback mechanisms between plant nutrient content, nitrogen cycling, and herbivore-plant interactions can vary between a nutrient accelerating mode favoring increased herbivore biomass and a nutrient decelerating mode characterized by reduced herbivore biomass. These alternate modes are determined largely by plant nitrogen content. Plant nitrogen content is known to be influenced by atmospheric CO 2 concentrations, temperature, and precipitation. It is argued that Lateglacial climate change, particularly increases in atmospheric CO 2, shifted herbivore-ecosystem dynamics from a nutrient accelerating mode to a nutrient decelerating mode at the end of the Pleistocene, leading to reduced megafaunal population densities. An examination of Sporormiella records - a proxy for megaherbivore biomass - indicates that megafaunal populations collapsed first in the east and later in the west, possibly reflecting regional differences in precipitation or vegetation structure. The fortuitous intersection of the climatically driven nitrogen sink, followed by any one or combination of subsequent anthropogenic, environmental, or extra-terrestrial mechanisms could explain why extinctions took place at the end of the Pleistocene rather than during previous glacial-interglacial cycles.

Including spatial data in nutrient balance modelling on dairy farms

NASA Astrophysics Data System (ADS)

van Leeuwen, Maricke; van Middelaar, Corina; Stoof, Cathelijne; Oenema, Jouke; Stoorvogel, Jetse; de Boer, Imke

2017-04-01

The Annual Nutrient Cycle Assessment (ANCA) calculates the nitrogen (N) and phosphorus (P) balance at a dairy farm, while taking into account the subsequent nutrient cycles of the herd, manure, soil and crop components. Since January 2016, Dutch dairy farmers are required to use ANCA in order to increase understanding of nutrient flows and to minimize nutrient losses to the environment. A nutrient balance calculates the difference between nutrient inputs and outputs. Nutrients enter the farm via purchased feed, fertilizers, deposition and fixation by legumes (nitrogen), and leave the farm via milk, livestock, manure, and roughages. A positive balance indicates to which extent N and/or P are lost to the environment via gaseous emissions (N), leaching, run-off and accumulation in soil. A negative balance indicates that N and/or P are depleted from soil. ANCA was designed to calculate average nutrient flows on farm level (for the herd, manure, soil and crop components). ANCA was not designed to perform calculations of nutrient flows at the field level, as it uses averaged nutrient inputs and outputs across all fields, and it does not include field specific soil characteristics. Land management decisions, however, such as the level of N and P application, are typically taken at the field level given the specific crop and soil characteristics. Therefore the information that ANCA provides is likely not sufficient to support farmers' decisions on land management to minimize nutrient losses to the environment. This is particularly a problem when land management and soils vary between fields. For an accurate estimate of nutrient flows in a given farming system that can be used to optimize land management, the spatial scale of nutrient inputs and outputs (and thus the effect of land management and soil variation) could be essential. Our aim was to determine the effect of the spatial scale of nutrient inputs and outputs on modelled nutrient flows and nutrient use efficiencies at Dutch dairy farms. We selected two dairy farms located on cover sands in the Netherlands. One farm was located on relatively homogeneous soil type, and one on many different soil types within the sandy soils. A full year of data of N and P inputs and outputs on farm and field level were provided by the farmers, including field level yields, yield composition, manure composition, degree of grazing and degree of mowing. Soil heterogeneity was defined as the number of soil units within the farm corrected for surface area, and quantified from the Dutch 1:50.000 soil map. N and P balances at farm and field level were determined, as well as differences in nutrient use efficiency, leaching, and N emission. We will present the effect of the spatial scale on nutrient balance analysis and discuss to which degree any differences are caused by within-farm land management and soil variation. This study highlights to which extent within-farm land management and soil variation should be taken into account when modelling nutrient flows and nutrient use efficiencies at farm level, to contribute to field-based decision making for improved land management.

Taking nature into lab: biomineralization by heavy metal resistant streptomycetes in soil

NASA Astrophysics Data System (ADS)

Schütze, E.; Weist, A.; Klose, M.; Wach, T.; Schumann, M.; Nietzsche, S.; Merten, D.; Baumert, J.; Majzlan, J.; Kothe, E.

2013-02-01

Biomineralization by heavy metal resistant streptomycetes was tested to evaluate the potential influence on metal mobilities in soil. Thus, we designed an experiment adopting conditions from classical laboratory methods to natural conditions prevailing in metal-rich soils with media spiked with heavy metals, soil agar, and nutrient enriched or unamended soil incubated with the bacteria. As a result, all strains were able to form struvite minerals on tryptic soy broth (TSB) media supplemented with AlCl2, MnCl2 and CuSO4, as well as on soil agar. Some strains additionally formed struvite on nutrient enriched contaminated and control soil, as well as on metal contaminated soil without addition of media components. In contrast, switzerite was exclusively formed on minimal media spiked with MnCl2 by four heavy metal resistant strains, and on nutrient enriched control soil by one strain. Hydrated nickel hydrogen phosphate was only crystallized on complex media supplemented with NiSO4 by most strains. Thus, mineralization is a~dominant property of streptomycetes, with different processes likely to occur under laboratory conditions and sub-natural to natural conditions. This new understanding may be transferred to formation of minerals in rock and sediment evolution, to ore deposit formation, and also might have implications for our understanding of biological metal resistance mechanisms. We assume that biogeochemical cycles, nutrient storage and metal resistance might be affected by formation and re-solubilization of minerals like struvite in soil at microscale.

Taking nature into lab: biomineralization by heavy metal-resistant streptomycetes in soil

NASA Astrophysics Data System (ADS)

Schütze, E.; Weist, A.; Klose, M.; Wach, T.; Schumann, M.; Nietzsche, S.; Merten, D.; Baumert, J.; Majzlan, J.; Kothe, E.

2013-06-01

Biomineralization by heavy metal-resistant streptomycetes was tested to evaluate the potential influence on metal mobilities in soil. Thus, we designed an experiment adopting conditions from classical laboratory methods to natural conditions prevailing in metal-rich soils with media spiked with heavy metals, soil agar, and nutrient-enriched or unamended soil incubated with the bacteria. As a result, all strains were able to form struvite minerals (MgNH4PO4• 6H2O) on tryptic soy broth (TSB)-media supplemented with AlCl3, MnCl2 and CuSO4, as well as on soil agar. Some strains additionally formed struvite on nutrient-enriched contaminated and control soil, as well as on metal contaminated soil without addition of media components. In contrast, switzerite (Mn3(PO4)2• 7H2O) was exclusively formed on minimal media spiked with MnCl2 by four heavy metal-resistant strains, and on nutrient-enriched control soil by one strain. Hydrated nickel hydrogen phosphate was only crystallized on complex media supplemented with NiSO4 by most strains. Thus, mineralization is a dominant property of streptomycetes, with different processes likely to occur under laboratory conditions and sub-natural to natural conditions. This new understanding might have implications for our understanding of biological metal resistance mechanisms. We assume that biogeochemical cycles, nutrient storage and metal resistance might be affected by formation and re-solubilization of minerals like struvite in soil at microscale.

Impacts of altered precipitation regimes on soil communities and biogeochemistry in arid and semi-arid ecosystems.

PubMed

Nielsen, Uffe N; Ball, Becky A

2015-04-01

Altered precipitation patterns resulting from climate change will have particularly significant consequences in water-limited ecosystems, such as arid to semi-arid ecosystems, where discontinuous inputs of water control biological processes. Given that these ecosystems cover more than a third of Earth's terrestrial surface, it is important to understand how they respond to such alterations. Altered water availability may impact both aboveground and belowground communities and the interactions between these, with potential impacts on ecosystem functioning; however, most studies to date have focused exclusively on vegetation responses to altered precipitation regimes. To synthesize our understanding of potential climate change impacts on dryland ecosystems, we present here a review of current literature that reports the effects of precipitation events and altered precipitation regimes on belowground biota and biogeochemical cycling. Increased precipitation generally increases microbial biomass and fungal:bacterial ratio. Few studies report responses to reduced precipitation but the effects likely counter those of increased precipitation. Altered precipitation regimes have also been found to alter microbial community composition but broader generalizations are difficult to make. Changes in event size and frequency influences invertebrate activity and density with cascading impacts on the soil food web, which will likely impact carbon and nutrient pools. The long-term implications for biogeochemical cycling are inconclusive but several studies suggest that increased aridity may cause decoupling of carbon and nutrient cycling. We propose a new conceptual framework that incorporates hierarchical biotic responses to individual precipitation events more explicitly, including moderation of microbial activity and biomass by invertebrate grazing, and use this framework to make some predictions on impacts of altered precipitation regimes in terms of event size and frequency as well as mean annual precipitation. While our understanding of dryland ecosystems is improving, there is still a great need for longer term in situ manipulations of precipitation regime to test our model. © 2014 John Wiley & Sons Ltd.

A framework to assess biogeochemical response to ecosystem disturbance using nutrient partitioning ratios

USGS Publications Warehouse

Kranabetter, J. Marty; McLauchlan, Kendra K.; Enders, Sara K.; Fraterrigo, Jennifer M.; Higuera, Philip E.; Morris, Jesse L.; Rastetter, Edward B.; Barnes, Rebecca; Buma, Brian; Gavin, Daniel G.; Gerhart, Laci M.; Gillson, Lindsey; Hietz, Peter; Mack, Michelle C.; McNeil, Brenden; Perakis, Steven

2016-01-01

Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on terrestrial ecosystems, we present a conceptual framework that analyzes disturbances by their biogeochemical impacts. We posit that the ratio of soil and plant nutrient stocks in mature ecosystems represents a characteristic site property. Focusing on nitrogen (N), we hypothesize that this partitioning ratio (soil N: plant N) will undergo a predictable trajectory after disturbance. We investigate the nature of this partitioning ratio with three approaches: (1) nutrient stock data from forested ecosystems in North America, (2) a process-based ecosystem model, and (3) conceptual shifts in site nutrient availability with altered disturbance frequency. Partitioning ratios could be applied to a variety of ecosystems and successional states, allowing for improved temporal scaling of disturbance events. The generally short-term empirical evidence for recovery trajectories of nutrient stocks and partitioning ratios suggests two areas for future research. First, we need to recognize and quantify how disturbance effects can be accreting or depleting, depending on whether their net effect is to increase or decrease ecosystem nutrient stocks. Second, we need to test how altered disturbance frequencies from the present state may be constructive or destructive in their effects on biogeochemical cycling and nutrient availability. Long-term studies, with repeated sampling of soils and vegetation, will be essential in further developing this framework of biogeochemical response to disturbance.

Amoeboid organism solves complex nutritional challenges

PubMed Central

Dussutour, Audrey; Latty, Tanya; Beekman, Madeleine; Simpson, Stephen J.

2010-01-01

A fundamental question in nutritional biology is how distributed systems maintain an optimal supply of multiple nutrients essential for life and reproduction. In the case of animals, the nutritional requirements of the cells within the body are coordinated by the brain in neural and chemical dialogue with sensory systems and peripheral organs. At the level of an insect society, the requirements for the entire colony are met by the foraging efforts of a minority of workers responding to cues emanating from the brood. Both examples involve components specialized to deal with nutrient supply and demand (brains and peripheral organs, foragers and brood). However, some of the most species-rich, largest, and ecologically significant heterotrophic organisms on earth, such as the vast mycelial networks of fungi, comprise distributed networks without specialized centers: How do these organisms coordinate the search for multiple nutrients? We address this question in the acellular slime mold Physarum polycephalum and show that this extraordinary organism can make complex nutritional decisions, despite lacking a coordination center and comprising only a single vast multinucleate cell. We show that a single slime mold is able to grow to contact patches of different nutrient quality in the precise proportions necessary to compose an optimal diet. That such organisms have the capacity to maintain the balance of carbon- and nitrogen-based nutrients by selective foraging has considerable implications not only for our understanding of nutrient balancing in distributed systems but for the functional ecology of soils, nutrient cycling, and carbon sequestration. PMID:20142479

Complementary models of tree species-soil relationships in old-growth temperate forests

USGS Publications Warehouse

Cross, Alison; Perakis, Steven S.

2011-01-01

Ecosystem level studies identify plant soil feed backs as important controls on soil nutrient availability,particularly for nitrogen and phosphorus. Although site and species specific studies of tree species soil relationships are relatively common,comparatively fewer studies consider multiple coexisting speciesin old-growth forests across a range of sites that vary underlying soil fertility. We characterized patterns in forest floor and mineral soil nutrients associated with four common tree species across eight undisturbed old-growth forests in Oregon, USA, and used two complementary conceptual models to assess tree species soil relationships. Plant soil feedbacks that could reinforce sitelevel differences in nutrient availability were assessed using the context dependent relationships model, where by relative species based differences in each soil nutrient divergedorconvergedas nutrient status changed across sites. Tree species soil relationships that did not reflect strong feedbacks were evaluated using a site independent relationships model, where by forest floor and surface mineral soil nutrient tools differed consistently by tree species across sites,without variation in deeper mineral soils. We found that theorganically cycled elements carbon, nitrogen, and phosphorus exhibited context-dependent differences among species in both forest floor and mineral soil, and most of ten followed adivergence model,where by species differences were greatest at high-nutrient sites. These patterns are consistent with the oryemphasizing biotic control of these elements through plant soil feedback mechanisms. Site independent species differences were strongest for pool so if the weather able cations calcium, magnesium, potassium,as well as phosphorus, in mineral soils. Site independent species differences in forest floor nutrients we reattributable too nespecies that displayed significant greater forest floor mass accumulation. Our finding confirmed that site-independent and context-dependent tree species-soil relationships occur simultaneouslyinold-grow the temperate forests, with context-dependent relationships strongest for organically cycled elements, and site-independent relationships strongest for weather able elements with in organic cycling phases. These models provide complementary explanations for patterns of nutrient accumulation and cycling in mixed species old-growth temperate forests.

Characterizing the Fate and Mobility of Phosphorus in Utah Lake Sediments

NASA Astrophysics Data System (ADS)

Randall, M.; Carling, G. T.; Nelson, S.; Bickmore, B.; Miller, T.

2016-12-01

An increasing number of lakes worldwide are impacted by eutrophication and harmful algal blooms due to nutrient inputs. Utah Lake, located in northern Utah, is a eutrophic freshwater lake that is unique because it is naturally shallow, turbid, and alkaline with high dissolved oxygen levels. Recently, the Utah Division of Water Quality has proposed a new rule to limit phosphorus (P) loading to Utah Lake from wastewater treatment plants in an effort to mitigate eutrophication. However, reducing external P loads may not lead to immediate improvements in water quality due to the legacy pool of nutrients in lake sediments. The purpose of this study is to characterize the fate and mobility of P in Utah Lake to better understand P cycling in this unique system. We analyzed P speciation, mineralogy, and binding capacity in lake sediment samples collected from 9 locations across Utah Lake. P concentrations in sediment ranged from 1120 to 1610 ppm, with highest concentrations in Provo Bay near the major metropolitan area. Likewise, P concentrations in sediment pore water were highest in Provo Bay with concentrations up to 4 mg/L. Sequential leach tests indicate that 30-45% of P is bound to apatite and another 40-55% is adsorbed onto the surface of redox sensitive Fe/Mn hydroxides. This was confirmed by SEM images, which showed the highest P concentrations correlating with both Ca (apatite) and Fe (Fe hydroxides). The apatite-bound P fraction is likely immobile, but the P fraction sorbed to Fe/Mn hydroxides is potentially bioavailable under changing redox conditions. Batch sorption results indicate that lake sediments have a high capacity to absorb and remove P from the water column, with an average uptake of 70-96% of P from spiked surface water with concentrations ranging from 1-10 mg/L. Mineral precipitation and sorption to bottom sediments is an efficient removal mechanism of P in Utah Lake, but a significant portion of P may be available for resuspension and cycling in surface waters. Mitigating lake eutrophication is a complex problem that goes beyond reducing nutrient loads to the water body and requires a better understanding of internal P cycling.

Characterizing the Fate and Mobility of Phosphorus in Utah Lake Sediments

NASA Astrophysics Data System (ADS)

Carling, G. T.; Randall, M.; Nelson, S.; Rey, K.; Hansen, N.; Bickmore, B.; Miller, T.

2017-12-01

An increasing number of lakes worldwide are impacted by eutrophication and harmful algal blooms due to anthropogenic nutrient inputs. Utah Lake is a unique eutrophic freshwater lake that is naturally shallow, turbid, and alkaline with high dissolved oxygen levels that has experienced severe algal blooms in recent years. Recently, the Utah Division of Water Quality has proposed a new limitation of phosphorus (P) loading to Utah Lake from wastewater treatment plants in an effort to mitigate eutrophication. However, reducing external P loads may not lead to immediate improvements in water quality due to the legacy pool of nutrients in lake sediments. The purpose of this study was to characterize the fate and mobility of P in Utah Lake sediments to better understand P cycling in this unique system. We analyzed P speciation, mineralogy, and binding capacity in lake sediment samples collected from 15 locations across Utah Lake. P concentrations in sediment ranged from 615 to 1894 ppm, with highest concentrations in Provo Bay near the major metropolitan area. Sequential leach tests indicate that 25-50% of P is associated with Ca (CaCO₃/ Ca10(PO4)6(OH,F,Cl)2 ≈ P) and 40-60% is associated with Fe (Fe(OOH) ≈ P). Ca-associated P was confirmed by SEM images, which showed the highest P concentrations correlating with Ca (carbonate minerals/apatite). The Ca-associated P fraction is likely immobile, but the Fe-bound P is potentially bioavailable under changing redox conditions. Batch sorption results indicate that lake sediments have a high capacity to absorb and remove P from the water column, with an average uptake of 70-96% removal over the range of 1-10 mg/L P. Mineral precipitation and sorption to bottom sediments is an efficient removal mechanism of P in Utah Lake, but a significant portion of P may be temporarily available for resuspension and cycling in surface waters. Mitigating lake eutrophication is a complex problem that goes beyond decreasing external nutrient loads to the water body and requires a better understanding in-lake P cycling.

Coupled nutrient cycling determines tropical forest trajectory under elevated CO2.

NASA Astrophysics Data System (ADS)

Bouskill, N.; Zhu, Q.; Riley, W. J.

2017-12-01

Tropical forests have a disproportionate capacity to affect Earth's climate relative to their areal extent. Despite covering just 12 % of land surface, tropical forests account for 35 % of global net primary productivity and are among the most significant of terrestrial carbon stores. As atmospheric CO2 concentrations increase over the next century, the capacity of tropical forests to assimilate and sequester anthropogenic CO2 depends on limitation by multiple factors, including the availability of soil nutrients. Phosphorus availability has been considered to be the primary factor limiting metabolic processes within tropical forests. However, recent evidence points towards strong spatial and temporal co-limitation of tropical forests by both nitrogen and phosphorus. Here, we use the Accelerated Climate Modeling for Energy (ACME) Land Model (ALMv1-ECA-CNP) to examine how nutrient cycles interact and affect the trajectory of the tropical forest carbon sink under, (i) external nutrient input, (ii) climate (iii) elevated CO2, and (iv) a combination of 1-3. ALMv1 includes recent theoretical advances in representing belowground competition between roots, microbes and minerals for N and P uptake, explicit interactions between the nitrogen and phosphorus cycles (e.g., phosphatase production and nitrogen fixation), the dynamic internal allocation of plant N and P resources, and the integration of global datasets of plant physiological traits. We report nutrient fertilization (N, P, N+P) predictions for four sites in the tropics (El Verde, Puerto Rico, Barro Colorado Island, Panama, Manaus, Brazil and the Osa Peninsula, Coast Rica) to short-term nutrient fertilization (N, P, N+P), and benchmarking of the model against a meta-analysis of forest fertilization experiments. Subsequent simulations focus on the interaction of the carbon, nitrogen, and phosphorus cycles across the tropics with a focus on the implications of coupled nutrient cycling and the fate of the tropical forest carbon sink. Our results highlight the importance of transient CNP allocation, leaf-level stoichiometric controls on photosynthesis, and trade-offs between above and belowground plant investments.

Do ungulates accelerate or decelerate nitrogen cycling?

USGS Publications Warehouse

Singer, F.J.; Schoenecker, K.A.

2003-01-01

Nitrogen (N) is an essential nutrient for plants and animals, and N may be limiting in many western US grassland and shrubland ungulate winter ranges. Ungulates may influence N pools and they may alter N inputs and outputs (losses) to the ecosystem in a number of ways. In this paper we compare the ecosystem effects of ungulate herbivory in two western national parks, Rocky Mountain National Park (RMNP), Colorado, and Yellowstone National Park (YNP), Wyoming. We compare ungulate herbivory effects on N pools, N fluxes, N yields, and plant productivity in the context of the accelerating and decelerating nutrient cycling scenarios [Ecology 79 (1998) 165]. We concluded that the YNP grasslands fit the accelerating nutrient cycling scenario for ungulate herbivory: in response to grazing, grassland plant species abundance was largely unaltered, net annual aboveground primary productivity (NAPP) was stimulated (except during drought), consumption of key N-rich forages by ungulates was moderate and their abundance was sustained, soil N mineralization rates doubled, N pools increased, aboveground N yield increased, and N concentrations increased in most grassland plant species. Grazing in grasslands in RMNP resulted in no consistent detectable acceleration or deceleration of nutrient cycling. Grazing effects in short willow and aspen vegetation types in RMNP fit the decelerating nutrient cycling scenario of Ritchie et al. [Ecology 79 (1998) 165]. Key N-rich forages declined due to herbivory (willows, aspen, herbaceous vegetation). Aboveground production declined, soil N mineralization rates declined, N pools declined (NO3− pools were 30% that of ungrazed controls), and aboveground N yield declined. We believe that the higher ungulate densities and rates of plant consumption in RMNP, large declines in N-rich forage plants, and possibly a tendency of ungulates to move N from willow and aspen vegetation types to other types in RMNP, contributed to deceleration of nutrient cycling in two vegetation types in RMNP compared to acceleration in grasslands in YNP.

The micro and macro of nutrients across biological scales.

PubMed

Warne, Robin W

2014-11-01

During the past decade, we have gained new insights into the profound effects that essential micronutrients and macronutrients have on biological processes ranging from cellular function, to whole-organism performance, to dynamics in ecological communities, as well as to the structure and function of ecosystems. For example, disparities between intake and organismal requirements for specific nutrients are known to strongly affect animal physiological performance and impose trade-offs in the allocations of resources. However, recent findings have demonstrated that life-history allocation trade-offs and even microevolutionary dynamics may often be a result of molecular-level constraints on nutrient and metabolic processing, in which limiting reactants are routed among competing biochemical pathways. In addition, recent work has shown that complex ecological interactions between organismal physiological states such as exposure to environmental stressors and infectious pathogens can alter organismal requirements for, and, processing of, nutrients, and even alter subsequent nutrient cycling in ecosystems. Furthermore, new research is showing that such interactions, coupled with evolutionary and biogeographical constraints on the biosynthesis and availability of essential nutrients and micronutrients play an important, but still under-studied role in the structuring and functioning of ecosystems. The purpose of this introduction to the symposium "The Micro and Macro of Nutrient Effects in Animal Physiology and Ecology" is to briefly review and highlight recent research that has dramatically advanced our understanding of how nutrients in their varied forms profoundly affect and shape ecological and evolutionary processes. © The Author 2014. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved. For permissions please email: journals.permissions@oup.com.

High Frequency Monitoring of the Quantity and Quality of Dissolved Organic Matter Flux Between Salt Marshes and Plum Island Sound, MA

NASA Astrophysics Data System (ADS)

Zhao, Y.; Raymond, P.

2012-12-01

Salt marshes are highly productive continental margin ecosystems, due to abundant solar radiation, water, and nutrients provided by tidal water. The unique bi-directional water movement introduced by tidal effect has a major impact on the formation and productivity of salt marsh and the material exchange between salt marsh and adjacent estuary. As a major term in carbon, energy, and nutrient budget for aquatic ecosystem, dissolved organic matter (DOM) has broad impact on food webs, carbon cycle, and nutrient retention/release. The frequency and period of DOM measurement is greatly increased by the use of reagent-free, low-cost, and reliable measurement with fluorescent and UV sensors measuring the chromophoric fraction of total DOM. Although fluorescent sensors can only measure concentration, UV absorbance in a wide spectral range (200nm-380nm) could potentially provide information on DOM composition. With the help of accurate direct real time water flux measurement and lab analysis of lability, DON, and 3D excitation emission matrix spectroscopy (EEMs), a database of DOM quantity and quality exchanged between several comparative salt marshes and Plum Island Sound, MA could be established to study the dynamics of DOM behavior in the salt marsh-estuary system. Understanding DOM source and fate is very important for evaluating the role of salt marsh in the carbon cycle and food web in coastal and global scale because coastal carbon cycling represents up to 21% of the ocean's primary production (Jahnke 2008). In addition, the approaches outlined in this proposal have broad applicability to study DOM quantity and quality in the material exchange theme between systems.

Interactions among hydrogeomorphology, vegetation, and nutrient biogeochemistry in floodplain ecosystems

USGS Publications Warehouse

Noe, G.B.; Shroder, John F.

2013-01-01

Hydrogeomorphic, vegetative, and biogeochemical processes interact in floodplains resulting in great complexity that provides opportunities to better understand linkages among physical and biological processes in ecosystems. Floodplains and their associated river systems are structured by four-dimensional gradients of hydrogeomorphology: longitudinal, lateral, vertical, and temporal components. These four dimensions create dynamic hydrologic and geomorphologic mosaics that have a large imprint on the vegetation and nutrient biogeochemistry of floodplains. Plant physiology, population dynamics, community structure, and productivity are all very responsive to floodplain hydrogeomorphology. The strength of this relationship between vegetation and hydrogeomorphology is evident in the use of vegetation as an indicator of hydrogeomorphic processes. However, vegetation also influences hydrogeomorphology by modifying hydraulics and sediment entrainment and deposition that typically stabilize geomorphic patterns. Nitrogen and phosphorus biogeochemistry commonly influence plant productivity and community composition, although productivity is not limited by nutrient availability in all floodplains. Conversely, vegetation influences nutrient biogeochemistry through direct uptake and storage as well as production of organic matter that regulates microbial biogeochemical processes. The biogeochemistries of nitrogen and phosphorus cycling are very sensitive to spatial and temporal variation in hydrogeomorphology, in particular floodplain wetness and sedimentation. The least-studied interaction is the direct effect of biogeochemistry on hydrogeomorphology, but the control of nutrient availability over organic matter decomposition and thus soil permeability and elevation is likely important. Biogeochemistry also has the more documented but indirect control of hydrogeomorphology through regulation of plant biomass. In summary, the defining characteristics of floodplain ecosystems are determined by the many interactions among physical and biological processes. Conservation and restoration of the valuable ecosystem services that floodplains provide depend on improved understanding and predictive models of interactive system controls and behavior.

Interactions among hydrogeomorphology, vegetation, and nutrient biogeochemistry in floodplain ecosystems

USGS Publications Warehouse

Noe, G.B.

2013-01-01

Hydrogeomorphic, vegetative, and biogeochemical processes interact in floodplains resulting in great complexity that provides opportunities to better understand linkages among physical and biological processes in ecosystems. Floodplains and their associated river systems are structured by four dimensional gradients of hydrogeomorphology: longitudinal, lateral, vertical, and temporal components. These four dimensions create dynamic hydrologic and geomorphologic mosaics that have a large imprint on the vegetation and nutrient biogeochemistry of floodplains. Plant physiology, population dynamics, community structure, and productivity are all very responsive to floodplain hydrogeomorphology. The strength of this relationship between vegetation and hydrogeomorphology is evident in the use of vegetation as an indicator of hydrogeomorphic processes. However, vegetation also influences hydrogeomorphology by modifying hydraulics and sediment entrainment and deposition that typically stabilize geomorphic patterns. Nitrogen and phosphorus biogeochemistry commonly influence plant productivity and community composition, although productivity is not limited by nutrient availability in all floodplains. Conversely, vegetation influences nutrient biogeochemistry through direct uptake and storage as well as production of organic matter that regulates microbial biogeochemical processes. The biogeochemistries of nitrogen and phosphorus cycling are very sensitive to spatial and temporal variation in hydrogeomorphology, in particular floodplain wetness and sedimentation. The least studied interaction is the direct effect of biogeochemistry on hydrogeomorphology, but the control of nutrient availability over organic matter decomposition and thus soil permeability and elevation is likely important. Biogeochemistry also has the more documented but indirect control of hydrogeomorphology through regulation of plant biomass. In summary, the defining characteristics of floodplain ecosystems are determined by the many interactions among physical and biological processes. Conservation and restoration of the valuable ecosystem services that floodplains provide depends on improved understanding and predictive models of interactive system controls and behavior.

Interacting Physical and Biological Processes Affecting Nutrient Transport Through Human Dominated Landscapes

NASA Astrophysics Data System (ADS)

Finlay, J. C.

2015-12-01

Human activities increasingly dominate biogeochemical cycles of limiting nutrients on Earth. Urban and agricultural landscapes represent the largest sources of excess nutrients that drive water quality degradation. The physical structure of both urban and agricultural watersheds has been extensively modified, and these changes have large impacts on water and nutrient transport. Despite strong physical controls over nutrient transport in human dominated landscapes, biological processes play important roles in determining the fates of both nitrogen and phosphorus. This talk uses examples from research in urban and agricultural watersheds in the Midwestern USA to illustrate interactions of physical and biological controls over nutrient cycles that have shifted nitrogen (N) and phosphorus (P) sources and cycling in unexpected ways in response to management changes. In urban watersheds, efforts to improve water quality have been hindered by legacy sources of phosphorus added to storm water through transport to drainage systems by vegetation. Similarly, reductions in field erosion in agricultural watersheds have not led to major reductions in phosphorus transport, because of continued release of biological sources of P. Where management of phosphorus has been most effective in reducing eutrophication of lakes, decreases in N removal processes have led to long term increases in N concentration and transport. Together, these examples show important roles for biological processes affecting nutrient movement in highly modified landscapes. Consideration of the downstream physical and biological responses of management changes are thus critical toward identification of actions that will most effectively reduce excess nutrients watersheds and coastal zones.

Terrestrial biogeochemical cycles - Global interactions with the atmosphere and hydrology

NASA Technical Reports Server (NTRS)

Schimel, David S.; Parton, William J.; Kittel, Timothy G. F.

1991-01-01

A review is presented of developments in ecosystem theory, remote sensing, and geographic information systems that support new endeavors in spatial modeling. A paradigm has emerged to predict ecosystem behavior based on understanding responses to multiple resources. Ecosystem models couple primary production to decomposition and nutrient availability utilizing this paradigm. It is indicated that coupling of transport and ecosystem processes alters the behavior of earth system components (terrestrial ecosystems, hydrology, and the atmosphere) from that of an uncoupled model.

A redefinition of water masses in the Vietnamese upwelling area

NASA Astrophysics Data System (ADS)

Dippner, Joachim W.; Loick-Wilde, Natalie

2011-01-01

A redefinition of characteristic water masses in the Vietnamese upwelling area is presented based on five interdisciplinary cruises during different seasons and 331 CTD casts. In contrast to the previous definition of Rojana-anawat et al. (2001), we clearly can define water masses which serve as end members of mixing. This new definition is useful for an improved understanding of geographical positions of different water masses with respect to climate variability, the phytoplankton distribution and complex nutrient cycle in this area.

Nutrient cycling associated with the seagrass Halophila ovalis in the Swan-Canning Estuary based on seasonal variations in biomass and tissue nutrients

NASA Astrophysics Data System (ADS)

Connell, E. L.; Walker, D. I.

2001-09-01

Halophila ovalis occupies about 20% (461 ha) of the Swan-Canning Estuary. To assess the role of this plant in the biogeochemical cycling of the estuary, its biomass, nutrient dynamics and oxygen release from its roots to the sediment were investigated. This paper describes a conceptual model developed to extrapolate these findings to the whole estuary.The model follows changes in H. ovalis meadows in the Swan-Canning Estuary on a seasonal basis over an annual cycle. Total maximum seagrass biomass was estimated as 346 t dry weight (DW) in summer, declining in winter. In spring, although H. ovalis biomass did not increase, tissue nutrient concentrations were higher when external nutrient concentrations were high. From spring to summer, when external nutrient concentrations in the water column were severely depleted, shoot to root-rhizome biomass ratios changed from 1 : 1 in winter to 1 : 1·5 in summer. Plant tissue nutrients also decreased in root-rhizomes and increased in shoots, indicating an allocation of internal nutrient resources to the shoots for growth. Despite depletion of nitrogen in the water column, ammonium was still available in the sediment. Ammonium concentrations in the sediment porewater decreased in summer, suggesting H. ovalis meadows were a sink for ammonium. With an increase in biomass in summer, including the density of roots, oxygen release from H. ovalis roots subsequently increased. H. ovalis meadows act as a substantial sink for nutrients in the Swan-Canning Estuary in spring and summer. In winter, when there are large losses of plant biomass, H. ovalis meadows become a source of nutrients to the estuary.

Herbivores and nutrients control grassland plant diversity via light limitation

USDA-ARS?s Scientific Manuscript database

Human alterations to nutrient cycles and herbivore communities are dramatically altering global biodiversity. Theory predicts these changes to be strongly counteractive: nutrient addition drives plant species loss through intensified competition for light, whereas herbivores prevent competitive excl...

A representation of the phosphorus cycle for ORCHIDEE (revision 4520)

NASA Astrophysics Data System (ADS)

Goll, Daniel S.; Vuichard, Nicolas; Maignan, Fabienne; Jornet-Puig, Albert; Sardans, Jordi; Violette, Aurelie; Peng, Shushi; Sun, Yan; Kvakic, Marko; Guimberteau, Matthieu; Guenet, Bertrand; Zaehle, Soenke; Penuelas, Josep; Janssens, Ivan; Ciais, Philippe

2017-10-01

Land surface models rarely incorporate the terrestrial phosphorus cycle and its interactions with the carbon cycle, despite the extensive scientific debate about the importance of nitrogen and phosphorus supply for future land carbon uptake. We describe a representation of the terrestrial phosphorus cycle for the ORCHIDEE land surface model, and evaluate it with data from nutrient manipulation experiments along a soil formation chronosequence in Hawaii. ORCHIDEE accounts for the influence of the nutritional state of vegetation on tissue nutrient concentrations, photosynthesis, plant growth, biomass allocation, biochemical (phosphatase-mediated) mineralization, and biological nitrogen fixation. Changes in the nutrient content (quality) of litter affect the carbon use efficiency of decomposition and in return the nutrient availability to vegetation. The model explicitly accounts for root zone depletion of phosphorus as a function of root phosphorus uptake and phosphorus transport from the soil to the root surface. The model captures the observed differences in the foliage stoichiometry of vegetation between an early (300-year) and a late (4.1 Myr) stage of soil development. The contrasting sensitivities of net primary productivity to the addition of either nitrogen, phosphorus, or both among sites are in general reproduced by the model. As observed, the model simulates a preferential stimulation of leaf level productivity when nitrogen stress is alleviated, while leaf level productivity and leaf area index are stimulated equally when phosphorus stress is alleviated. The nutrient use efficiencies in the model are lower than observed primarily due to biases in the nutrient content and turnover of woody biomass. We conclude that ORCHIDEE is able to reproduce the shift from nitrogen to phosphorus limited net primary productivity along the soil development chronosequence, as well as the contrasting responses of net primary productivity to nutrient addition.

Effects of changes in nutrient loading and composition on hypoxia dynamics and internal nutrient cycling of a stratified coastal lagoon

NASA Astrophysics Data System (ADS)

Zhu, Yafei; McCowan, Andrew; Cook, Perran L. M.

2017-10-01

The effects of changes in catchment nutrient loading and composition on the phytoplankton dynamics, development of hypoxia and internal nutrient dynamics in a stratified coastal lagoon system (the Gippsland Lakes) were investigated using a 3-D coupled hydrodynamic biogeochemical water quality model. The study showed that primary production was equally sensitive to changed dissolved inorganic and particulate organic nitrogen loads, highlighting the need for a better understanding of particulate organic matter bioavailability. Stratification and sediment carbon enrichment were the main drivers for the hypoxia and subsequent sediment phosphorus release in Lake King. High primary production stimulated by large nitrogen loading brought on by a winter flood contributed almost all the sediment carbon deposition (as opposed to catchment loads), which was ultimately responsible for summer bottom-water hypoxia. Interestingly, internal recycling of phosphorus was more sensitive to changed nitrogen loads than total phosphorus loads, highlighting the potential importance of nitrogen loads exerting a control over systems that become phosphorus limited (such as during summer nitrogen-fixing blooms of cyanobacteria). Therefore, the current study highlighted the need to reduce both total nitrogen and total phosphorus for water quality improvement in estuarine systems.

Geochemical ecosystem engineering by the mud shrimp Upogebia pugettensis (Crustacea: Thalassinidae) in Yaquina Bay, Oregon: density-dependent effects on organic matter remineralization and nutrient cycling

EPA Science Inventory

We investigated the effect of the thalassinid mud shrimp Upogebia pugettensis on organic matter and nutrient cycling on Idaho Flat, an intertidal flat in the Yaquina River estuary, Oregon. Field studies were conducted to measure carbon and nitrogen remineralization rates and bent...

Estimating Summer Nutrient Concentrations in Northeastern Lakes from SPARROW Load Predictions and Modeled Lake Depth and Volume

EPA Science Inventory

Global nutrient cycles have been altered by use of fossil fuels and fertilizers resulting in increases in nutrient loads to aquatic systems. In the United States, excess nutrients have been repeatedly reported as the primary cause of lake water quality impairments. Setting nutr...

Consumer-driven nutrient dynamics in freshwater ecosystems: from individuals to ecosystems.

PubMed

Atkinson, Carla L; Capps, Krista A; Rugenski, Amanda T; Vanni, Michael J

2017-11-01

The role of animals in modulating nutrient cycling [hereafter, consumer-driven nutrient dynamics (CND)] has been accepted as an important influence on both community structure and ecosystem function in aquatic systems. Yet there is great variability in the influence of CND across species and ecosystems, and the causes of this variation are not well understood. Here, we review and synthesize the mechanisms behind CND in fresh waters. We reviewed 131 articles on CND published between 1973 and 1 June 2015. The rate of new publications in CND has increased from 1.4 papers per year during 1973-2002 to 7.3 per year during 2003-2015. The majority of investigations are in North America with many concentrating on fish. More recent studies have focused on animal-mediated nutrient excretion rates relative to nutrient demand and indirect impacts (e.g. decomposition). We identified several mechanisms that influence CND across levels of biological organization. Factors affecting the stoichiometric plasticity of consumers, including body size, feeding history and ontogeny, play an important role in determining the impact of individual consumers on nutrient dynamics and underlie the stoichiometry of CND across time and space. The abiotic characteristics of an ecosystem affect the net impact of consumers on ecosystem processes by influencing consumer metabolic processes (e.g. consumption and excretion/egestion rates), non-CND supply of nutrients and ecosystem nutrient demand. Furthermore, the transformation and transport of elements by populations and communities of consumers also influences the flow of energy and nutrients across ecosystem boundaries. This review highlights that shifts in community composition or biomass of consumers and eco-evolutionary underpinnings can have strong effects on the functional role of consumers in ecosystem processes, yet these are relatively unexplored aspects of CND. Future research should evaluate the value of using species traits and abiotic conditions to predict and understand the effects of consumers on ecosystem-level nutrient dynamics across temporal and spatial scales. Moreover, new work in CND should strive to integrate knowledge from disparate fields of ecology and environmental science, such as physiology and ecosystem ecology, to develop a comprehensive and mechanistic understanding of the functional role of consumers. Comparative and experimental studies that develop testable hypotheses to challenge the current assumptions of CND, including consumer stoichiometric homeostasis, are needed to assess the significance of CND among species and across freshwater ecosystems. © 2016 Cambridge Philosophical Society.

Incorporating ecogeomorphic feedbacks to better understand resiliency in streams: A review and directions forward

NASA Astrophysics Data System (ADS)

Atkinson, Carla L.; Allen, Daniel C.; Davis, Lisa; Nickerson, Zachary L.

2018-03-01

Decades of interdisciplinary research show river form and function depends on interactions between the living and nonliving world, but a dominant paradigm underlying ecogeomorphic work consists of a top-down, unidirectional approach with abiotic forces driving biotic systems. Stream form and location within the stream network does dictate the habitat and resources available for organisms and overall community structure. Yet this traditional hierarchal framework on its own is inadequate in communicating information regarding the influence of biological systems on fluvial geomorphology that lead to changes in channel morphology, sediment cycling, and system-scale functions (e.g., sediment yield, biogeochemical nutrient cycling). Substantial evidence that organisms influence fluvial geomorphology exists, specifically the ability of aquatic vegetation and lotic animals to modify flow velocities and sediment deposition and transport - thus challenging the traditional hierarchal framework. Researchers recognize the need for ecogeomorphic frameworks that conceptualize feedbacks between organisms, sediment transport, and geomorphic structure. Furthermore, vital ecosystem processes, such as biogeochemical nutrient cycling represent the conversations that are occurring between geomorphological and biological systems. Here we review and synthesize selected case studies highlighting the role organisms play in moderating geomorphic processes and likely interact with these processes to have an impact on an essential ecosystem process, biogeochemical nutrient recycling. We explore whether biophysical interactions can provide information essential to improving predictions of system-scale river functions, specifically sediment transport and biogeochemical cycling, and discuss tools used to study these interactions. We suggest that current conceptual frameworks should acknowledge that hydrologic, geomorphologic, and ecologic processes operate on different temporal scales, generating bidirectional feedback loops over space and time. Hydro- and geomorphologic processes, operating episodically during bankfull conditions, influence ecological processes (e.g., biogeochemical cycling) occurring over longer time periods during base-flow conditions. This ecological activity generates the antecedent conditions that influence the hydro- and geomorphologic processes occurring during the next high flow event, creating a bidirectional feedback. This feedback should enhance the resiliency of fluvial landforms and ecosystem processes, allowing physical and biological processes to pull and push against each other over time.

North Pacific barium isotope distributions illustrate importance of ocean mixing in controlling barium distributions despite weak regional circulation

NASA Astrophysics Data System (ADS)

Geyman, B.; Auro, M. E. E.; LaVigne, M.; Ptacek, J. L.; Horner, T. J.

2016-12-01

The dissolved behavior of barium in the ocean exhibits a `refractory' nutrient-type profile similar to that of silicon, which has led to the use of Ba as a proxy for paleo-productivity and carbon cycling. Marine barium cycling appears to be controlled by the precipitation of micron-scale barite crystals in the mesopelagic and their subsequent dissolution throughout the water column, which has been shown to impart an isotopic signature that may itself harbor information about ocean circulation and export production. However, the utility of Ba-based proxies in chemical and paleoceanography relies on a sound understanding of the processes governing marine barium distributions, which remain unresolved. Here, we report the first full oceanographic depth profile of barium isotopes from the North Pacific Ocean (30 N, 140 W), which offers the ability to resolve biogeochemical cycling from mixing processes in a given water mass. Our data confirm findings from other oceanographic regions showing a close coupling between increasing [Ba] and decreasing Ba-isotope compositions with depth. Unlike other profiles however, this coupling is restricted to the upper 1,000 m of the North Pacific water column, with samples from between 1,000 m and 4,500 m showing a roughly 60 % increase in [Ba] but essentially no changes in their Ba-isotope compositions (within measurement uncertainty of 15 ppm/AMU). As with Atlantic data, samples spanning the entire profile define a linear trend (R2 > 0.9) when plotted as Ba-isotope compositions against 1/[Ba], indicating that conservative mixing can account for much of the Ba-isotope variation in the North Pacific water column. Overall, these findings highlight the utility of stable isotope measurements to illuminate the processes governing nutrient cycling, and support the critical role of large-scale ocean circulation in setting `refractory' nutrient distributions. These results have particular relevance to regions with relatively weak overturning circulation, such as the North Pacific, because they elucidate the mechanistic basis that underpins Ba/Ca and other Ba-based tracers of the marine carbon cycle in paleoceanography.

Rain forest nutrient cycling and productivity in response to large-scale litter manipulation.

PubMed

Wood, Tana E; Lawrence, Deborah; Clark, Deborah A; Chazdon, Robin L

2009-01-01

Litter-induced pulses of nutrient availability could play an important role in the productivity and nutrient cycling of forested ecosystems, especially tropical forests. Tropical forests experience such pulses as a result of wet-dry seasonality and during major climatic events, such as strong El Niños. We hypothesized that (1) an increase in the quantity and quality of litter inputs would stimulate leaf litter production, woody growth, and leaf litter nutrient cycling, and (2) the timing and magnitude of this response would be influenced by soil fertility and forest age. To test these hypotheses in a Costa Rican wet tropical forest, we established a large-scale litter manipulation experiment in two secondary forest sites and four old-growth forest sites of differing soil fertility. In replicated plots at each site, leaves and twigs (< 2 cm diameter) were removed from a 400-m2 area and added to an adjacent 100-m2 area. This transfer was the equivalent of adding 5-25 kg/ha of organic P to the forest floor. We analyzed leaf litter mass, [N] and [P], and N and P inputs for addition, removal, and control plots over a two-year period. We also evaluated basal area increment of trees in removal and addition plots. There was no response of forest productivity or nutrient cycling to litter removal; however, litter addition significantly increased leaf litter production and N and P inputs 4-5 months following litter application. Litter production increased as much as 92%, and P and N inputs as much as 85% and 156%, respectively. In contrast, litter manipulation had no significant effect on woody growth. The increase in leaf litter production and N and P inputs were significantly positively related to the total P that was applied in litter form. Neither litter treatment nor forest type influenced the temporal pattern of any of the variables measured. Thus, environmental factors such as rainfall drive temporal variability in litter and nutrient inputs, while nutrient release from decomposing litter influences the magnitude. Seasonal or annual variation in leaf litter mass, such as occurs in strong El Niño events, could positively affect leaf litter nutrient cycling and forest productivity, indicating an ability of tropical trees to rapidly respond to increased nutrient availability.

An introduction to high-frequency nutrient and biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California

USGS Publications Warehouse

Kraus, Tamara E.C.; Bergamaschi, Brian A.; Downing, Bryan D.

2017-07-11

Executive SummaryThis report is the first in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). This first report provides an introduction to the reasons for and fundamental concepts behind collecting HF measurements, and describes the benefits associated with a real-time, continuous, HF, multi-parameter water quality monitoring station network that is co-located with flow stations. It then provides examples of how HF nutrient measurements have improved our understating of nutrient sources and cycling in aquatic systems worldwide, followed by specific examples from the Delta. These examples describe the ways in which HF instrumentation may be used for both fixed-station and spatial assessments. The overall intent of this document is to describe how HF measurements currently (2017) are being used in the Delta to examine the relationship between nutrient concentrations, nutrient cycling, and aquatic habitat conditions.The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the northern Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first, at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event (for example, storms, reservoir releases, phytoplankton blooms) timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales within hours, but also significant variability at longer timescales such as months or years. This multi-scale, high variability affects calculation of fluxes and loads, indicating that HF monitoring is necessary for understanding and assessing flux-based processes and outcomes in tidal environments, such as the Delta.The third report in the series (Bergamaschi and others, 2017) provides information about how to design HF nutrient and biogeochemical monitoring for assessment of nutrient inputs and dynamics in the Delta. The report provides background, principles, and considerations for designing an HF nutrient-monitoring network for the Sacramento–San Joaquin Delta to address high-priority, nutrient-management questions. The report starts with high-priority management questions to be addressed, continues with questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient‑monitoring network designs for the Delta. For the three example networks, we assess how they would address high-priority questions identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015).

Biogeochemical Cycling

NASA Technical Reports Server (NTRS)

Bebout, Brad; Fonda, Mark (Technical Monitor)

2002-01-01

This lecture will introduce the concept of biogeochemical cycling. The roles of microbes in the cycling of nutrients, production and consumption of trace gases, and mineralization will be briefly introduced.

Developing and using artificial soils to analyze soil microbial processes

NASA Astrophysics Data System (ADS)

Gao, X.; Cheng, H. Y.; Boynton, L.; Masiello, C. A.; Silberg, J. J.

2017-12-01

Microbial diversity and function in soils are governed by soil characteristics such as mineral composition, particles size and aggregations, soil organic matter (SOM), and availability of nutrients and H2O. The spatial and temporal heterogeneity of soils creates a range of niches (hotspots) differing in the availability of O2, H2O, and nutrients, which shapes microbial activities at scales ranging from nanometer to landscape. Synthetic biologists often examine microbial response trigged by their environment conditions in nutrient-rich aqueous media using single strain microbes. While these studies provided useful insight in the role of soil microbes in important soil biogeochemical processes (e.g., C cycling, N cycling, etc.), the results obtained from the over-simplified model systems are often not applicable natural soil systems. On the contrary, soil microbiologists examine microbial processes in natural soils using longer incubation time. However, due to its physical, chemical and biological complexity of natural soils, it is often difficult to examine soil characteristics independently and understand how each characteristic influences soil microbial activities and their corresponding soil functioning. Therefore, it is necessary to bridge the gap and develop a model matrix to exclude unpredictable influences from the environment while still reliably mimicking real environmental conditions. The objective of this study is to design a range of ecologically-relevant artificial soils with varying texture (particle size distribution), structure, mineralogy, SOM content, and nutrient heterogeneity. We thoroughly characterize the artificial soils for pH, active surface area and surface morphology, cation exchange capacity (CEC), and water retention curve. We demonstrate the effectiveness of the artificial soils as useful matrix for microbial processes, such as microbial growth and horizontal gene transfer (HGT), using the gas-reporting biosensors recently developed in our lab.

The ebb and flood of Silica: Quantifying dissolved and biogenic silica fluxes from a temperate salt marsh

NASA Astrophysics Data System (ADS)

Vieillard, Amanda M.; Fulweiler, Robinson W.; Hughes, Zoe J.; Carey, Joanna C.

2011-12-01

Salt marshes are widely studied due to the broad range of ecosystem services they provide including serving as crucial wildlife habitat and as hotspots for biogeochemical cycling. Nutrients such as nitrogen (N), phosphorus (P), and carbon (C) are well studied in these systems. However, salt marshes may also be important environments for the cycling of another key nutrient, silica (Si). Found at the land-sea interface, these systems are silica replete with large stocks in plant biomass, sediments, and porewater, and therefore, have the potential to play a substantial role in the transformation and export of silica to coastal waters. In an effort to better understand this role, we measured the fluxes of dissolved (DSi) and biogenic (BSi) silica into and out of two tidal creeks in a temperate, North American (Rowley, Massachusetts, USA) salt marsh. One of the creeks has been fertilized from May to September for six years allowing us to examine the impacts of nutrient addition on silica dynamics within the marsh. High-resolution sampling in July 2010 showed no significant differences in Si concentrations between the fertilized and reference creeks with dissolved silica ranging from 0.5 to 108 μM and biogenic from 2.0 to 56 μM. Net fluxes indicated that the marsh is a point source of dissolved silica to the estuary in the summer with a net flux of approximately 169 mol h -1, demonstrating that this system exports DSi on the same magnitude as some nearby, mid-sized rivers. If these findings hold true for all salt marshes, then these already valuable regions are contributing yet another ecosystem service that has been previously overlooked; by exporting DSi to coastal receiving waters, salt marshes are actively providing this important nutrient for coastal primary productivity.

Soil Biogeochemistry in a Changing Climate: Effect of Snow Removal

NASA Astrophysics Data System (ADS)

Patel, K.; Tatariw, C.; Fernandez, I. J.; Macrae, J. D.; Ohno, T.

2016-12-01

Winter snowpack plays an important role in ecosystem functioning, thermally insulating the subnivean soil from freezing temperatures. Wintertime microbial mineralization of organic material results in accumulation of nutrients under the snowpack, which are available post-melt for plant root uptake. The northeastern United States has experienced declining snow accumulation, and climate models project this trend will continue in the future. Intermittent and reduced snow cover increases soil freezing and frost damage, which can have implications on spring nutrient availability and forest productivity. We conducted a 2-year snow removal experiment in the Dwight B. DeMeritt Forest at the University of Maine to study subnivean winter processes, and to examine the effect of a decreased snowpack on soil winter and spring biogeochemistry. Surface organic soils were collected during winter and spring of 2015 and 2016, years with sharply contrasting snow accumulation, to track temporal changes in nutrient dynamics as the system evolved from under the snowpack. Laboratory extractions and incubations were performed to quantify the inorganic available nitrogen, dissolved organic carbon (DOC), and potential net N-mineralization (PNNM) in field moist soils. Snow removal resulted in decreased winter soil temperatures (2-8°C colder than the reference plots). There was an increased incidence of rain-on-soil events in the winter, forming concrete frost. Freeze-thaw cycles in the treatment plots resulted in higher NH4-N and DOC concentrations, but lower PNNM, compared to the reference plots. Treatment effects on DOC and NH4-N concentrations were not seen in the spring, although the effects on PNNM persisted. Our findings demonstrated that freeze-thaw cycles play an important role in the timing and magnitude of soil nutrient availability during the vernal transition. Understanding these processes becomes increasingly important when defining forest ecosystem response to a changing climate.

Weak leaf photosynthesis and nutrient content relationships from tropical vegetation

NASA Astrophysics Data System (ADS)

Domingues, T. F.; Ishida, F. Y.; Feldpaush, T.; Saiz, G.; Grace, J.; Meir, P.; Lloyd, J.

2015-12-01

Evergreen rain forests and savannas are the two major vegetations of tropical land ecosystems, in terms of land area, biomass, biodiversity, biogeochemical cycles and rates of land use change. Mechanistically understanding ecosystem functioning on such ecosystems is still far from complete, but important for generation of future vegetation scenarios in response to global changes. Leaf photosynthetic rates is a key processes usually represented on land surface-atmosphere models, although data from tropical ecosystems is scarce, considering the high biodiversity they contain. As a shortcut, models usually recur to relationships between leaf nutrient concentration and photosynthetic rates. Such strategy is convenient, given the possibility of global datasets on leave nutrients derived from hyperspectral remote sensing data. Given the importance of Nitrogen on enzyme composition, this nutrient is usually used to infer photosynthetic capacity of leaves. Our experience, based on individual measurements on 1809 individual leaves from 428 species of trees and shrubs naturally occurring on tropical forests and savannas from South America, Africa and Australia, indicates that the relationship between leaf nitrogen and its assimilation capacity is weak. Therefore, leaf Nitrogen alone is a poor predictor of photosynthetic rates of tropical vegetation. Phosphorus concentrations from tropical soils are usually low and is often implied that this nutrient limits primary productivity of tropical vegetation. Still, phosphorus (or other nutrients) did not exerted large influence over photosynthetic capacity, although potassium influenced vegetation structure and function. Such results draw attention to the risks of applying universal nitrogen-photosynthesis relationships on biogeochemical models. Moreover, our data suggests that affiliation of plant species within phylogenetic hierarchy is an important aspect in understanding leaf trait variation. The lack of a strong single predictor of leaf photosynthesis indicates that the importance of other factors such as secondary compounds, mesophyll conductance, Rubisco activation state, etc might be more influential than anticipated.

Stoichiometry and estimates of nutrient standing stocks of larval salamanders in Appalachian headwater streams

Treesearch

Joseph R. Milanovich; John C. Maerz; Amy D. Rosemond

2015-01-01

1.Because of their longevity and skeletal phosphorus demand, vertebrates can have distinct influences on the uptake, storage and recycling of nutrients in ecosystems. Quantification of body stoichiometry, combined with estimates of abundance or biomass, can provide insights into the effect of vertebrates on nutrient cycling. 2.We measured the nutrient content and...

Immobilization and mineralization of N and P by heterotrophic microbes during leaf decomposition

Treesearch

Beth Cheever; Erika Kratzer; Jackson Webster

2012-01-01

According to theory, the rate and stoichiometry of microbial mineralization depend, in part, on nutrient availability. For microbes associated with leaves in streams, nutrients are available from both the water column and the leaf. Therefore, microbial nutrient cycling may change with nutrient availability and during leaf decomposition. We explored spatial and temporal...

MICROBIAL ENZYME ACTIVITY FOR CHARACTERIZING NUTRIENT LOADING TO GREAT LAKES COASTAL WETLANDS

EPA Science Inventory

Energy and material flows in aquatic ecosystems are mediated by microbial carbon and nutrient cycling. Extracellular enzymes produced by the microbial community aid in the degradation of organic matter and the resultant acquisition of limiting nutrients. Organic carbon sequestrat...

The impact of biotic/abiotic interfaces in mineral nutrient cycling: A study of soils of the Santa Cruz chronosequence, California

USGS Publications Warehouse

White, Art F.; Schulz, Marjorie S.; Vivit, Davison V.; Bullen, Tomas D.; Fitzpatrick, John A.

2012-01-01

The fraction of a mineral nutrient annually cycled through the plants, compared to that lost from pore water discharge, is defined their respective fluxes Fj,plants = qj,plants/(qj,plants + qj,discharge) with average values for K and Ca (FK,plants = 0.99; FCa,plants = 0.93) much higher than for Mg and Na (FMg,plants 0.64; FNa,plants = 0.28). The discrimination against Rb and Sr by plants is described by fractionation factors (KSr/Ca = 0.86; KRb/K = 0.83) which are used in Rayleigh fractionation-mixing calculations to fit seasonal patterns in solute K and Ca cycling. KRb/K and K24Mg/22Mg values (derived from isotope data in the literature) fall within fractionation envelopes bounded by inputs from rainfall and mineral weathering. KSr/Ca and K44Ca/40Ca fractionation factors fall outside these envelopes indicating that Ca nutrient cycling is closed to these external inputs. Small net positive K and Ca fluxes (6–14 mol m-2 yr-1), based on annual mass balances, indicate that the soils are accumulating mineral nutrients, probably as a result of long-term environmental disequilibrium.

Integrating algaculture into small wastewater treatment plants: process flow options and life cycle impacts.

PubMed

Steele, Muriel M; Anctil, Annick; Ladner, David A

2014-05-01

Algaculture has the potential to be a sustainable option for nutrient removal at wastewater treatment plants. The purpose of this study was to compare the environmental impacts of three likely algaculture integration strategies to a conventional nutrient removal strategy. Process modeling was used to determine life cycle inventory data and a comparative life cycle assessment was used to determine environmental impacts. Treatment scenarios included a base case treatment plant without nutrient removal, a plant with conventional nutrient removal, and three other cases with algal unit processes placed at the head of the plant, in a side stream, and at the end of the plant, respectively. Impact categories included eutrophication, global warming, ecotoxicity, and primary energy demand. Integrating algaculture prior to activated sludge proved to be most beneficial of the scenarios considered for all impact categories; however, this scenario would also require primary sedimentation and impacts of that unit process should be considered for implementation of such a system.

Scaling of physical constraints at the root-soil interface to macroscopic patterns of nutrient retention in ecosystems.

PubMed

Gerber, Stefan; Brookshire, E N Jack

2014-03-01

Nutrient limitation in terrestrial ecosystems is often accompanied with maintaining a nearly closed vegetation-soil nutrient cycle. The ability to retain nutrients in an ecosystem requires the capacity of the plant-soil system to draw down nutrient levels in soils effectually such that export concentrations in soil solutions remain low. Here we address the physical constraints of plant nutrient uptake that may be limited by the diffusive movement of nutrients in soils, by the uptake at the root/mycorrhizal surface, and from interactions with soil water flow. We derive an analytical framework of soil nutrient transport and uptake and predict levels of plant available nutrient concentration and residence time. Our results, which we evaluate for nitrogen, show that the physical environment permits plants to lower soil solute concentration substantially. Our analysis confirms that plant uptake capacities in soils are considerable, such that water movement in soils is generally too small to significantly erode dissolved plant-available nitrogen. Inorganic nitrogen concentrations in headwater streams are congruent with the prediction of our theoretical framework. Our framework offers a physical-based parameterization of nutrient uptake in ecosystem models and has the potential to serve as an important tool toward scaling biogeochemical cycles from individual roots to landscapes.

Where microorganisms meet rocks in the Earth's Critical Zone

NASA Astrophysics Data System (ADS)

Akob, D. M.; Küsel, K.

2011-12-01

The Critical Zone (CZ) is the Earth's outer shell where all the fundamental physical, chemical, and biological processes critical for sustaining life occur and interact. As microbes in the CZ drive many of these biogeochemical cycles, understanding their impact on life-sustaining processes starts with an understanding of their biodiversity. In this review, we summarize the factors controlling where terrestrial CZ microbes (prokaryotes and micro-eukaryotes) live and what is known about their diversity and function. Microbes are found throughout the CZ, down to 5 km below the surface, but their functional roles change with depth due to habitat complexity, e.g. variability in pore spaces, water, oxygen, and nutrients. Abundances of prokaryotes and micro-eukaryotes decrease from 1010 or 107 cells g soil-1 or rock-1, or ml water-1 by up to eight orders of magnitude with depth. Although symbiotic mycorrhizal fungi and free-living decomposers have been studied extensively in soil habitats, where they occur up to 103 cells g soil-1, little is known regarding their identity or impact on weathering in the deep subsurface. The relatively low abundance of micro-eukaryotes in the deep subsurface suggests that they are limited in space, nutrients, are unable to cope with oxygen limitations, or some combination thereof. Since deep regions of the CZ have limited access to recent photosynthesis-derived carbon, microbes there depend on deposited organic material or a chemolithoautotrophic metabolism that allows for a complete food chain, independent from the surface, although limited energy flux means cell growth may take tens to thousands of years. Microbes are found in all regions of the CZ and can mediate important biogeochemical processes, but more work is needed to understand how microbial populations influence the links between different regions of the CZ and weathering processes. With the recent development of "omics" technologies, microbial ecologists have new methods that can be used to link the composition and function of in situ microbial communities. In particular, these methods can be used to search for new metabolic pathways that are relevant to biogeochemical nutrient cycling and determine how the activity of microorganisms can affect transport of carbon, particulates, and reactive gases between and within CZ regions.

Declining oxygen in the global ocean and coastal waters.

PubMed

Breitburg, Denise; Levin, Lisa A; Oschlies, Andreas; Grégoire, Marilaure; Chavez, Francisco P; Conley, Daniel J; Garçon, Véronique; Gilbert, Denis; Gutiérrez, Dimitri; Isensee, Kirsten; Jacinto, Gil S; Limburg, Karin E; Montes, Ivonne; Naqvi, S W A; Pitcher, Grant C; Rabalais, Nancy N; Roman, Michael R; Rose, Kenneth A; Seibel, Brad A; Telszewski, Maciej; Yasuhara, Moriaki; Zhang, Jing

2018-01-05

Oxygen is fundamental to life. Not only is it essential for the survival of individual animals, but it regulates global cycles of major nutrients and carbon. The oxygen content of the open ocean and coastal waters has been declining for at least the past half-century, largely because of human activities that have increased global temperatures and nutrients discharged to coastal waters. These changes have accelerated consumption of oxygen by microbial respiration, reduced solubility of oxygen in water, and reduced the rate of oxygen resupply from the atmosphere to the ocean interior, with a wide range of biological and ecological consequences. Further research is needed to understand and predict long-term, global- and regional-scale oxygen changes and their effects on marine and estuarine fisheries and ecosystems. Copyright © 2018, American Association for the Advancement of Science.

Temporal variability of foliar nutrients: responses to nitrogen deposition and prescribed fire in a temperate steppe

USGS Publications Warehouse

Lü, Xiao-Tao; Reed, Sasha C.; Hou, Shuang-Li; Hu, Yan-Yu; Wei, Hai-Wei; Lü, Fu-Mei; Cui, Qiang; Han, Xing Guo

2017-01-01

Plant nutrient concentrations and stoichiometry drive fundamental ecosystem processes, with important implications for primary production, diversity, and ecosystem sustainability. While a range of evidence exists regarding how plant nutrients vary across spatial scales, our understanding of their temporal variation remains less well understood. Nevertheless, we know nutrients regulate plant function across time, and that important temporal controls could strongly interact with environmental change. Here, we report results from a 3-year assessment of inter-annual changes of foliar nitrogen (N) and phosphorus (P) concentrations and stoichiometry in three dominant grasses in response to N deposition and prescribed fire in a temperate steppe of northern China. Foliar N and P concentrations and their ratios varied greatly among years, with this temporal variation strongly related to inter-annual variation in precipitation. Nitrogen deposition significantly increased foliar N concentrations and N:P ratios in all species, while fire significantly altered foliar N and P concentrations but had no significant impacts on N:P ratios. Generally, N addition enhanced the temporal stability of foliar N and decreased that of foliar P and of N:P ratios. Our results indicate that plant nutrient status and response to environmental change are temporally dynamic and that there are differential effects on the interactions between environmental change drivers and timing for different nutrients. These responses have important implications for consideration of global change effects on plant community structure and function, management strategies, and the modeling of biogeochemical cycles under global change scenarios.

Ammonium and phosphate enrichment across the dry-wet transition and their ecological relevance in a subtropical reservoir, China.

PubMed

Mo, Qiongli; Chen, Nengwang; Zhou, Xingpeng; Chen, Jixin; Duan, Shuiwang

2016-07-13

Small river reservoirs are widespread and can be ecologically sensitive across the dry-wet transition under monsoon climate with respect to nutrient loading and phenology. Monthly sampling and high-frequency in situ measurements were conducted for a river reservoir (southeast China) in 2013-2014 to examine the seasonal pattern of nutrients and phytoplankton. We found that nutrient concentrations were runoff-mediated and determined by watershed inputs and, in some cases, by internal cycling depending on hydrology and temperature. Ammonium and phosphate were relatively enriched in February-March (a transitional period from dry/cold to wet/hot climate), which can be ascribed to initial flushing runoff from human/animal waste and spring fertilizer use. A phytoplankton bloom (mainly Chlorophyta) occurred during April after a surge of water temperature, probably due to the higher availability of inorganic nutrients and sunlight and suitable hydraulic residence time (medium flow) in the transitional period. The concentration of phytoplankton was low during May-June (wet-hot climate) when the concentrations of total suspended matter (TSM) were highest, likely owing to the "shading" effect of TSM and turbulence of high flow conditions. Nutrient-algae shifts across the dry-wet season and vertical profiles suggested that algal blooms seem to be fueled primarily by phosphate and ammonium rather than nitrate. Current findings of a strong temporal pattern and the relationship between physical parameters, nutrient and biota would improve our understanding of drivers of change in water quality and ecosystem functions with dam construction.

Plant ecosystem responses to rising atmospheric CO2: applying a "two-timing" approach to assess alternative hypotheses for mechanisms of nutrient limitation

NASA Astrophysics Data System (ADS)

Medlyn, B.; Jiang, M.; Zaehle, S.

2017-12-01

There is now ample experimental evidence that the response of terrestrial vegetation to rising atmospheric CO2 concentration is modified by soil nutrient availability. How to represent nutrient cycling processes is thus a key consideration for vegetation models. We have previously used model intercomparison to demonstrate that models incorporating different assumptions predict very different responses at Free-Air CO2 Enrichment experiments. Careful examination of model outputs has provided some insight into the reasons for the different model outcomes, but it is difficult to attribute outcomes to specific assumptions. Here we investigate the impact of individual assumptions in a generic plant carbon-nutrient cycling model. The G'DAY (Generic Decomposition And Yield) model is modified to incorporate alternative hypotheses for nutrient cycling. We analyse the impact of these assumptions in the model using a simple analytical approach known as "two-timing". This analysis identifies the quasi-equilibrium behaviour of the model at the time scales of the component pools. The analysis provides a useful mathematical framework for probing model behaviour and identifying the most critical assumptions for experimental study.

Centrosome misorientation mediates slowing of the cell cycle under limited nutrient conditions in Drosophila male germline stem cells

PubMed Central

Roth, Therese M.; Chiang, C.-Y. Ason; Inaba, Mayu; Yuan, Hebao; Salzmann, Viktoria; Roth, Caitlin E.; Yamashita, Yukiko M.

2012-01-01

Drosophila male germline stem cells (GSCs) divide asymmetrically, balancing self-renewal and differentiation. Although asymmetric stem cell division balances between self-renewal and differentiation, it does not dictate how frequently differentiating cells must be produced. In male GSCs, asymmetric GSC division is achieved by stereotyped positioning of the centrosome with respect to the stem cell niche. Recently we showed that the centrosome orientation checkpoint monitors the correct centrosome orientation to ensure an asymmetric outcome of the GSC division. When GSC centrosomes are not correctly oriented with respect to the niche, GSC cell cycle is arrested/delayed until the correct centrosome orientation is reacquired. Here we show that induction of centrosome misorientation upon culture in poor nutrient conditions mediates slowing of GSC cell proliferation via activation of the centrosome orientation checkpoint. Consistently, inactivation of the centrosome orientation checkpoint leads to lack of cell cycle slowdown even under poor nutrient conditions. We propose that centrosome misorientation serves as a mediator that transduces nutrient information into stem cell proliferation, providing a previously unappreciated mechanism of stem cell regulation in response to nutrient conditions. PMID:22357619

Iron control on global productivity: an efficient inverse model of the ocean's coupled phosphate and iron cycles.

NASA Astrophysics Data System (ADS)

Pasquier, B.; Holzer, M.; Frants, M.

2016-02-01

We construct a data-constrained mechanistic inverse model of the ocean's coupled phosphorus and iron cycles. The nutrient cycling is embedded in a data-assimilated steady global circulation. Biological nutrient uptake is parameterized in terms of nutrient, light, and temperature limitations on growth for two classes of phytoplankton that are not transported explicitly. A matrix formulation of the discretized nutrient tracer equations allows for efficient numerical solutions, which facilitates the objective optimization of the key biogeochemical parameters. The optimization minimizes the misfit between the modelled and observed nutrient fields of the current climate. We systematically assess the nonlinear response of the biological pump to changes in the aeolian iron supply for a variety of scenarios. Specifically, Green-function techniques are employed to quantify in detail the pathways and timescales with which those perturbations are propagated throughout the world oceans, determining the global teleconnections that mediate the response of the global ocean ecosystem. We confirm previous findings from idealized studies that increased iron fertilization decreases biological production in the subtropical gyres and we quantify the counterintuitive and asymmetric response of global productivity to increases and decreases in the aeolian iron supply.

The importance of integration and scale in the arbuscular mycorrhizal symbiosis.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, R. M.; Kling, M.; Environmental Research

The arbuscular mycorrhizal (AM) fungus contributes to system processes and functions at various hierarchical organizational levels, through their establishment of linkages and feedbacks between whole-plants and nutrient cycles. Even though these fungal mediated feedbacks and linkages involve lower-organizational level processes (e.g. photo-assimilate partitioning, interfacial assimilate uptake and transport mechanisms, intraradical versus extraradical fungal growth), they influence higher-organizational scales that affect community and ecosystem behavior (e.g. whole-plant photosynthesis, biodiversity, nutrient and carbon cycling, soil structure). Hence, incorporating AM fungi into research directed at understanding many of the diverse environmental issues confronting society will require knowledge of how these fungi respond tomore » or initiate changes in vegetation dynamics, soil fertility or both. Within the last few years, the rapid advancement in the development of analytical tools has increased the resolution by which we are able to quantify the mycorrhizal symbiosis. It is important that these tools are applied within a conceptual framework that is temporally and spatially relevant to fungus and host. Unfortunately, many of the studies being conducted on the mycorrhizal symbiosis at lower organizational scales are concerned with questions directed solely at understanding fungus or host without awareness of what the plant physiologist or ecologist needs for integrating the mycorrhizal association into larger organizational scales or process levels. We show by using the flow of C from plant-to-fungus-to-soil, that through thoughtful integration, we have the ability to bridge different organizational scales. Thus, an essential need of mycorrhizal research is not only to better integrate the various disciplines of mycorrhizal research, but also to identify those relevant links and scales needing further investigation for understanding the larger-organizational level responses.« less

Multi-nutrient, multi-group model of present and future oceanic phytoplankton communities

NASA Astrophysics Data System (ADS)

Litchman, E.; Klausmeier, C. A.; Miller, J. R.; Schofield, O. M.; Falkowski, P. G.

2006-11-01

Phytoplankton community composition profoundly affects patterns of nutrient cycling and the dynamics of marine food webs; therefore predicting present and future phytoplankton community structure is crucial to understand how ocean ecosystems respond to physical forcing and nutrient limitations. We develop a mechanistic model of phytoplankton communities that includes multiple taxonomic groups (diatoms, coccolithophores and prasinophytes), nutrients (nitrate, ammonium, phosphate, silicate and iron), light, and a generalist zooplankton grazer. Each taxonomic group was parameterized based on an extensive literature survey. We test the model at two contrasting sites in the modern ocean, the North Atlantic (North Atlantic Bloom Experiment, NABE) and subarctic North Pacific (ocean station Papa, OSP). The model successfully predicts general patterns of community composition and succession at both sites: In the North Atlantic, the model predicts a spring diatom bloom, followed by coccolithophore and prasinophyte blooms later in the season. In the North Pacific, the model reproduces the low chlorophyll community dominated by prasinophytes and coccolithophores, with low total biomass variability and high nutrient concentrations throughout the year. Sensitivity analysis revealed that the identity of the most sensitive parameters and the range of acceptable parameters differed between the two sites. We then use the model to predict community reorganization under different global change scenarios: a later onset and extended duration of stratification, with shallower mixed layer depths due to increased greenhouse gas concentrations; increase in deep water nitrogen; decrease in deep water phosphorus and increase or decrease in iron concentration. To estimate uncertainty in our predictions, we used a Monte Carlo sampling of the parameter space where future scenarios were run using parameter combinations that produced acceptable modern day outcomes and the robustness of the predictions was determined. Change in the onset and duration of stratification altered the timing and the magnitude of the spring diatom bloom in the North Atlantic and increased total phytoplankton and zooplankton biomass in the North Pacific. Changes in nutrient concentrations in some cases changed dominance patterns of major groups, as well as total chlorophyll and zooplankton biomass. Based on these scenarios, our model suggests that global environmental change will inevitably alter phytoplankton community structure and potentially impact global biogeochemical cycles.

The role of the everglades mangrove ecotone region (EMER) in regulating nutrient cycling and wetland productivity in South Florida

USGS Publications Warehouse

Rivera-Monroy, V. H.; Twilley, R.R.; Davis, S.E.; Childers, D.L.; Simard, M.; Chambers, R.; Jaffe, R.; Boyer, J.N.; Rudnick, D.T.; Zhang, K.; Castaneda-Moya, E.; Ewe, S.M.L.; Price, R.M.; Coronado-Molina, C.; Ross, M.; Smith, T.J.; Michot, B.; Meselhe, E.; Nuttle, W.; Troxler, T.G.; Noe, G.B.

2011-01-01

The authors summarize the main findings of the Florida Coastal Everglades Long-Term Ecological Research (FCE-LTER) program in the EMER, within the context of the Comprehensive Everglades Restoration Plan (CERP), to understand how regional processes, mediated by water flow, control population and ecosystem dynamics across the EMER landscape. Tree canopies with maximum height <3 m cover 49% of the EMER, particularly in the SE region. These scrub/dwarf mangroves are the result of a combination of low soil phosphorus (P < 59 ??g P g dw-1) in the calcareous marl substrate and long hydroperiod. Phosphorus limits the EMER and its freshwater watersheds due to the lack of terrigenous sediment input and the phosphorus-limited nature of the freshwater Everglades. Reduced freshwater delivery over the past 50years, combined with Everglades compartmentalization and a 10 cm rise in coastal sea level, has led to the landward transgression (???1.5 km in 54 years) of the mangrove ecotone. Seasonal variation in freshwater input strongly controls the temporal variation of nitrogen and P exports (99%) from the Everglades to Florida Bay. Rapid changes in nutrient availability and vegetation distribution during the last 50years show that future ecosystem restoration actions and land use decisions can exert a major influence, similar to sea level rise over the short term, on nutrient cycling and wetland productivity in the EMER. Copyright ?? 2011 Taylor & Francis Group, LLC.

Soil Microbial Community Responses to Long-Term Global Change Factors in a California Grassland

NASA Astrophysics Data System (ADS)

Qin, K.; Peay, K.

2015-12-01

Soil fungal and bacterial communities act as mediators of terrestrial carbon and nutrient cycling, and interact with the aboveground plant community as both pathogens and mutualists. However, these soil microbial communities are sensitive to changes in their environment. A better understanding of the response of soil microbial communities to global change may help to predict future soil microbial diversity, and assist in creating more comprehensive models of terrestrial carbon and nutrient cycles. This study examines the effects of four global change factors (increased temperature, increased variability in precipitation, nitrogen deposition, and CO2 enrichment) on soil microbial communities at the Jasper Ridge Global Change Experiment (JRGCE), a full-factorial global change manipulative experiment on three hectares of California grassland. While similar studies have examined the effects of global change on soil microbial communities, few have manipulated more factors or been longer in duration than the JRGCE, which began field treatments in 1998. We find that nitrogen deposition, CO2 enrichment, and increased variability in precipitation significantly affect the structure of both fungal and bacterial communities, and explain more of the variation in the community structures than do local soil chemistry or aboveground plant community. Fungal richness is correlated positively with soil nitrogen content and negatively with soil water content. Arbuscular mycorrhizal fungi (AMF), which associate closely with herbaceous plants' roots and assist in nutrient uptake, decrease in both richness and relative abundance in elevated CO2 treatments.

Microbial taxonomic diversity and adaptation mechanisms in lithic ecosystems of the northern Victoria Land, Antarctica

NASA Astrophysics Data System (ADS)

Kim, O. S.; Lee, J.; Cho, J. H.; Kwon, M.; Cho, A.; Kim, M.; Woo, J.; Hong, S. G.; Lee, J.

2016-12-01

Rock is one of the best habitat for microorganisms in Antarctica, providing the good condition to avoid strong sunlight and wind. Furthermore, geochemistry in rock can provide as nutrients for microorganisms. Barren rock can be considered as an ecosystem by fouling, which is defined as the settlement of organisms and their growth. These life forms have the specialized mechanism to adapt the harsh environmental conditions such as a below subzero temperature, a unique annual light/dark cycle, wind chill and limited water availability and nutrient supply. However, little is known about the microbial communities and their adaptation mechanisms in this harsh environments. In this study, we focus on the microbial ecology in order to understand what kind of microorganisms are present based on culture-dependent and -independent methods collected barren rock samples from the northern Victoria Land, Antarctica. Additionally, we present the complete genome sequence of Cryobacterium arcticum PAMC 27867, one of the isolates from these rock samples, in order to understand the microbial adaptation strategies in lithic ecosystems, Antarctica.

Experimental and observational studies find contrasting responses of soil nutrients to climate change.

PubMed

Yuan, Z Y; Jiao, F; Shi, X R; Sardans, Jordi; Maestre, Fernando T; Delgado-Baquerizo, Manuel; Reich, Peter B; Peñuelas, Josep

2017-06-01

Manipulative experiments and observations along environmental gradients, the two most common approaches to evaluate the impacts of climate change on nutrient cycling, are generally assumed to produce similar results, but this assumption has rarely been tested. We did so by conducting a meta-analysis and found that soil nutrients responded differentially to drivers of climate change depending on the approach considered. Soil carbon, nitrogen, and phosphorus concentrations generally decreased with water addition in manipulative experiments but increased with annual precipitation along environmental gradients. Different patterns were also observed between warming experiments and temperature gradients. Our findings provide evidence of inconsistent results and suggest that manipulative experiments may be better predictors of the causal impacts of short-term (months to years) climate change on soil nutrients but environmental gradients may provide better information for long-term correlations (centuries to millennia) between these nutrients and climatic features. Ecosystem models should consequently incorporate both experimental and observational data to properly assess the impacts of climate change on nutrient cycling.

High-Resolution in Situ Measurement of Nitrate in Runoff from the Greenland Ice Sheet.

PubMed

Beaton, Alexander D; Wadham, Jemma L; Hawkings, Jon; Bagshaw, Elizabeth A; Lamarche-Gagnon, Guillaume; Mowlem, Matthew C; Tranter, Martyn

2017-11-07

We report the first in situ high-resolution nitrate time series from two proglacial meltwater rivers draining the Greenland Ice Sheet, using a recently developed submersible analyzer based on lab-on-chip (LOC) technology. The low sample volume (320 μL) required by the LOC analyzer meant that low concentration (few micromolar to submicromolar), highly turbid subglacial meltwater could be filtered and colorimetrically analyzed in situ. Nitrate concentrations in rivers draining Leverett Glacier in southwest Greenland and Kiattuut Sermiat in southern Greenland exhibited a clear diurnal signal and a gradual decline at the commencement of the melt season, displaying trends that would not be discernible using traditional daily manual sampling. Nitrate concentrations varied by 4.4 μM (±0.2 μM) over a 10 day period at Kiattuut Sermiat and 3.0 μM (±0.2 μM) over a 14 day period at Leverett Glacier. Marked changes in nitrate concentrations were observed when discharge began to increase. High-resolution in situ measurements such as these have the potential to significantly advance the understanding of nutrient cycling in remote systems, where the dynamics of nutrient release are complex but are important for downstream biogeochemical cycles.

Comparing the Life Cycle Energy Consumption, Global ...

EPA Pesticide Factsheets

Managing the water-energy-nutrient nexus for the built environment requires, in part, a full system analysis of energy consumption, global warming and eutrophication potentials of municipal water services. As an example, we evaluated the life cycle energy use, greenhouse gas (GHG) emissions and aqueous nutrient releases of the whole anthropogenic municipal water cycle starting from raw water extraction to wastewater treatment and reuse/discharge for five municipal water and wastewater systems. The assessed options included conventional centralized services and four alternative options following the principles of source-separation and water fit-for-purpose. The comparative life cycle assessment identified that centralized drinking water supply coupled with blackwater energy recovery and on-site greywater treatment and reuse was the most energyand carbon-efficient water service system evaluated, while the conventional (drinking water and sewerage) centralized system ranked as the most energy- and carbon-intensive system. The electricity generated from blackwater and food residuals co-digestion was estimated to offset at least 40% of life cycle energy consumption for water/waste services. The dry composting toilet option demonstrated the lowest life cycle eutrophication potential. The nutrients in wastewater effluent are the dominating contributors for the eutrophication potential for the assessed system configurations. Among the parameters for which variability

Effects of shelter and enrichment on the ecology and nutrient cycling of microbial communities of subtidal carbonate sediments.

PubMed

Forehead, Hugh I; Kendrick, Gary A; Thompson, Peter A

2012-04-01

The interactions between physical disturbances and biogeochemical cycling are fundamental to ecology. The benthic microbial community controls the major pathway of nutrient recycling in most shallow-water ecosystems. This community is strongly influenced by physical forcing and nutrient inputs. Our study tests the hypotheses that benthic microbial communities respond to shelter and enrichment with (1) increased biomass, (2) change in community composition and (3) increased uptake of inorganic nutrients from the water column. Replicate in situ plots were sheltered from physical disturbance and enriched with inorganic nutrients or left without additional nutrients. At t(0) and after 10 days, sediment-water fluxes of nutrients, O(2) and N(2) , were measured, the community was characterized with biomarkers. Autochthonous benthic microalgal (BMA) biomass increased 30% with shelter and a natural fivefold increase in nutrient concentration; biomass did not increase with greater enrichment. Diatoms remained the dominant taxon of BMA, suggesting that the sediments were not N or Si limited. Bacteria and other heterotrophic organisms increased with enrichment and shelter. Daily exchanges of inorganic nutrients between sediments and the water column did not change in response to shelter or nutrient enrichment. In these sediments, physical disturbance, perhaps in conjunction with nutrient enrichment, was the primary determinant of microbial biomass. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Host-derived viral transporter protein for nitrogen uptake in infected marine phytoplankton

PubMed Central

Chambouvet, Aurélie; Milner, David S.; Attah, Victoria; Terrado, Ramón; Lovejoy, Connie; Moreau, Hervé; Derelle, Évelyne; Richards, Thomas A.

2017-01-01

Phytoplankton community structure is shaped by both bottom–up factors, such as nutrient availability, and top–down processes, such as predation. Here we show that marine viruses can blur these distinctions, being able to amend how host cells acquire nutrients from their environment while also predating and lysing their algal hosts. Viral genomes often encode genes derived from their host. These genes may allow the virus to manipulate host metabolism to improve viral fitness. We identify in the genome of a phytoplankton virus, which infects the small green alga Ostreococcus tauri, a host-derived ammonium transporter. This gene is transcribed during infection and when expressed in yeast mutants the viral protein is located to the plasma membrane and rescues growth when cultured with ammonium as the sole nitrogen source. We also show that viral infection alters the nature of nitrogen compound uptake of host cells, by both increasing substrate affinity and allowing the host to access diverse nitrogen sources. This is important because the availability of nitrogen often limits phytoplankton growth. Collectively, these data show that a virus can acquire genes encoding nutrient transporters from a host genome and that expression of the viral gene can alter the nutrient uptake behavior of host cells. These results have implications for understanding how viruses manipulate the physiology and ecology of phytoplankton, influence marine nutrient cycles, and act as vectors for horizontal gene transfer. PMID:28827361

Specific gravity of coarse woody debris for some central Appalachian hardwood forest species

Treesearch

M.B. Adams; D.R. Owens

2001-01-01

Although coarse woody debris (CWD) may play an important role in nutrient cycling in eastern hardwood forests, it rarely is included in nutrient budgets for most ecosystems. Meaningful nutrient budgets require reliable estimates of biomass and nutrient concentrations. The CWD of 21 tree species was sampled in a central Appalachian forest within the Fernow Experimental...

Stable isotopes of transition and post-transition metals as tracers in environmental studies

USGS Publications Warehouse

Bullen, Thomas D.; Baskaran, Mark

2011-01-01

The transition and post-transition metals, which include the elements in Groups 3–12 of the Periodic Table, have a broad range of geological and biological roles as well as industrial applications and thus are widespread in the environment. Interdisciplinary research over the past decade has resulted in a broad understanding of the isotope systematics of this important group of elements and revealed largely unexpected variability in isotope composition for natural materials. Significant kinetic and equilibrium isotope fractionation has been observed for redox sensitive metals such as iron, chromium, copper, molybdenum and mercury, and for metals that are not redox sensitive in nature such as cadmium and zinc. In the environmental sciences, the isotopes are increasingly being used to understand important issues such as tracing of metal contaminant sources and fates, unraveling metal redox cycles, deciphering metal nutrient pathways and cycles, and developing isotope biosignatures that can indicate the role of biological activity in ancient and modern planetary systems.

Nutrient cycling Microbial Ecosystems: Assembly, Function and Targeted Design

DTIC Science & Technology

2017-05-05

different chemical transformations, converting potentially harmful chemicals via a series of intermediates, to harmless waste products. This shuttling of...Report: Nutrient-cycling Microbial Ecosystems: Assembly, Function and Targeted Design The views, opinions and/or findings contained in this report...are those of the author(s) and should not contrued as an official Department of the Army position, policy or decision, unless so designated by other

Effects of nutrient additions on ecosystem carbon cycle in a Puerto Rican tropical wet forest

Treesearch

YIQING LI; MING XU; XIAOMING ZOU

2006-01-01

Wet tropical forests play a critical role in global ecosystem carbon (C) cycle, but C allocation and the response of different C pools to nutrient addition in these forests remain poorly understood. We measured soil organic carbon (SOC), litterfall, root biomass, microbial biomass and soil physical and chemical properties in a wet tropical forest from May 1996 to July...

The Influence of Epiphytic Lichens on the Nutrient Cycling of a Blue Oak Woodland

Treesearch

Johannes M. Knops; Thomas H. H. Nash III; William H. Schlesinger

1997-01-01

We evaluated the importance of epiphytic lichens in the nutrient cycling of a blue oak (Quercus douglasii) woodland in California. Each oak tree contained an average of 3.8 kg lichen biomass, totaling 590 kg per ha. For comparison, oak leaf biomass was 958 kg per ha. We compared tree growth, volume and composition of throughfall (rainfall falling...

Cycling of nutrient elements in the North Sea

NASA Astrophysics Data System (ADS)

Brockmann, U. H.; Laane, R. W. P. M.; Postma, J.

The cycling of elements of inorganic and organic nutrients (carbon, nitrogen, phosphorus and silicate) in the North Sea is described. The regional effects on nutrient cycling such as thermal and haline stratification, coastal interaction, river discharges, upwelling and frontal zones are discussed. The horizontal and vertical distribution of the inorganic nutrients (nitrate, phosphate, ammonia and silicate) at the surface is given for the whole North Sea during two situations: spring (1986) and winter (1987). In winter, highest nutrient concentrations were found at the northern boundary in the Atlantic inflow, and in the continental coastal waters. During the winter cruise, nutrient minima were detected in the Dogger Bank area. This is an indication that primary production continues during winter. Generally, the surface concentrations during winter were similar to the bottom concentrations. Except for phosphate, highest concentrations were measured just above the bottom. During late spring 1986 the concentrations of nutrients at the surface and below the densicline were generally significantly lower than during winter. Only at the Atlantic boundary in the north and near the estuaries higher concentrations were detected. In stratified parts of the North Sea, the decomposition of sedimented biomass caused the ammonia concentrations in the bottom layer to be significantly higher in spring than in winter. Incidents of frontal upwelling in the central North Sea introduce nutrient-rich bottom water into the euphotic zone, enhancing phytoplankton growth in the central North Sea during summer. The ratios of nitrogen nutrients to phosphate show that in the central North Sea nitrogen is a limiting factor rather than phosphorus, whereas in the continental coastal water and off England the opposite is true. Riverine input and trapping mechanisms in the estuaries and tidal flats cause the concentrations of organic matter (dissolved and particulate) to be highest in the coastal zones and to decrease seaward. During summer the concentration of dissolved organic carbon increases throughout the North Sea. It is calculated that about 60% of the biomass formed by primary production is converted into dissolved organic carbon, 40% directly goes into the foodweb. The biological impact of the plankton is readily apparent from increased surface concentrations of different dissolved organic substances during spring blooms. Examples of eutrophication and effects of nutrient limitation are given, together with other biological repercussions such as coupling of phytoplankton and nutrient succession. Budget calculations for the different nutrient elements show that in the North Sea the biological turnover greatly exceeds the estimated annual inflow and outflow of nutrient elements. Finally, recommendations are given for future research. They include analysing dissolved organic compounds and micronutrients and following multidisciplinary measurements strategies at one location in order to obtain more information for balancing budgets and for the detailed analysis of nutrient cycling in the North Sea.

Environmental Stress-mediated EPS Production Shape Microbial Activity on Various Hydrated Rough Surfaces

NASA Astrophysics Data System (ADS)

Wang, G.; Liu, L.; Chen, G.

2016-12-01

The complex environmental physical and chemical processes and interplay with the associating biological responses are keys to understanding the environmental microbiology ensconced in environmental remediation, water quality control, food safety, nutrient cycling, and etc., yet remain poorly understood. Using experimental micromodels, we study how environmental conditions (e.g., hydration fluctuation, nutrient limitation, pH variation, etc.) affect microbial extracellular polymeric substances (EPS) production and their configuration within various hydrated surfaces, and impacts on microbial motility, surface attachment, aggregation, and other bioremediation activities. To elucidate the potential mechanisms underlying the complex bio-physicochemical processes, we developed an individual-based and spatio-temporally resolved modeling platform that explicitly considers microscale aqueous-phase configuration and nutrient transport/diffusion and associated biophysical processes affecting individual microbial cell life history. We quantitatively explore the effects of the above microscale environmental processes on bio-physicochemical interactions affecting microbial growth, motility, surface attachment and aggregation, and shaping population interactions and functions. Simulation scenarios of microbial induced pollutant (e.g., roxarsone) biotransformation on various hydrated rough surfaces will also be present.

Data-model integration to interpret connectivity between biogeochemical cycling, and vegetation phenology and productivity in mountainous ecosystems under changing hydrologic regimes

NASA Astrophysics Data System (ADS)

Brodie, E.; Arora, B.; Beller, H. R.; Bill, M.; Bouskill, N.; Chakraborty, R.; Conrad, M. E.; Dafflon, B.; Enquist, B. J.; Falco, N.; Henderson, A.; Karaoz, U.; Polussa, A.; Sorensen, P.; Steltzer, H.; Wainwright, H. M.; Wang, S.; Williams, K. H.; Wilmer, C.; Wu, Y.

2017-12-01

In mountainous systems, snow-melt is associated with a large pulse of nutrients that originates from under-snow microbial mineralization of organic matter and microbial biomass turnover. Vegetation phenology in these systems is regulated by environmental cues such as air temperature ranges and photoperiod, such that, under typical conditions, vegetation greening and nutrient uptake occur in sync with microbial biomass turnover and nutrient release, closing nutrient cycles and enhancing nutrient retention. However, early snow-melt has been observed with increasing frequency in the mountainous west and is hypothesized to disrupt coupled plant-microbial behavior, potentially resulting in a temporal discontinuity between microbial nutrient release and vegetation greening. As part of the Watershed Function Scientific Focus Area (SFA) at Berkeley Lab we are quantifying below-ground biogeochemistry and above-ground phenology and vegetation chemistry and their relationships to hydrologic events at a lower montane hillslope in the East River catchment, Crested Butte, CO. This presentation will focus on data-model integration to interpret connectivity between biogeochemical cycling of nitrogen and vegetation nitrogen demand. Initial model results suggest that early snow-melt will result in an earlier accumulation and leaching loss of nitrate from the upper soil depths but that vegetation productivity may not decline as traits such as greater rooting depth and resource allocation to stems are favored.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens

NASA Astrophysics Data System (ADS)

Gharajehdaghipour, Tazarve; Roth, James D.; Fafard, Paul M.; Markham, John H.

2016-04-01

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ15N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens.

PubMed

Gharajehdaghipour, Tazarve; Roth, James D; Fafard, Paul M; Markham, John H

2016-04-05

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ(15)N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens

PubMed Central

Gharajehdaghipour, Tazarve; Roth, James D.; Fafard, Paul M.; Markham, John H.

2016-01-01

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ15N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra. PMID:27045973

Impact of Seasonal Variability in Water, Plant and Soil Nutrient Dynamics in Agroecosystems

NASA Astrophysics Data System (ADS)

Pelak, N. F., III; Revelli, R.; Porporato, A. M.

2017-12-01

Agroecosystems cover a significant fraction of the Earth's surface, making their water and nutrient cycles a major component of global cycles across spatial and temporal scales. Most agroecosystems experience seasonality via variations in precipitation, temperature, and radiation, in addition to human activities which also occur seasonally, such as fertilization, irrigation, and harvesting. These seasonal drivers interact with the system in complex ways which are often poorly characterized. Crop models, which are widely used for research, decision support, and prediction of crop yields, are among the best tools available to analyze these systems. Though normally constructed as a set of dynamical equations forced by hydroclimatic variability, they are not often analyzed using dynamical systems theory and methods from stochastic ecohydrology. With the goal of developing this viewpoint and thus elucidating the roles of key feedbacks and forcings on system stability and on optimal fertilization and irrigation strategies, we develop a minimal dynamical system which contains the key components of a crop model, coupled to a carbon and nitrogen cycling model, driven by seasonal fluctuations in water and nutrient availability, temperature, and radiation. External drivers include seasonally varying climatic conditions and random rainfall forcing, irrigation and fertilization as well as harvesting. The model is used to analyze the magnitudes and interactions of the effects of seasonality on carbon and nutrient cycles, crop productivity, nutrient export of agroecosystems, and optimal management strategies with reference to productivity, sustainability and profitability. The impact of likely future climate scenarios on these systems is also discussed.

Integrated Systems Mitigate Land Degradation and Improve Agricultural System Sustainability

NASA Astrophysics Data System (ADS)

Landblom, Douglas; Senturklu, Songul; Cihacek, Larry; Brevik, Eric

2017-04-01

Rain-fed agricultural production supported by exogenous inputs is not sustainable because a continuous influx of expensive inputs (fertilizer, chemicals, fossil fuel, labor, tillage, and other) is required. Alternatives to traditional management allow natural occurring dynamic soil processes to provide the necessary microbial activity that supports nutrient cycling in balance with nature. Research designed to investigate the potential for integrated systems to replace expensive inputs has shown that healthy soils rich in soil organic matter (SOM) are the foundation upon which microbial nutrient cycling can reduce and eventually replace expensive fertilizer. No-till seed placement technology effectively replaces multiple-pass cultivation conserving stored soil water in semi-arid farming systems. In multi-crop rotations, cool- and warm-season crops are grown in sequence to meet goals of the integrated farming and ranching system, and each crop in the rotation complements the subsequent crop by supplying a continuous flow of essential SOM for soil nutrient cycling. Grazing animals serve an essential role in the system's sustainability as non-mechanized animal harvesters that reduce fossil fuel consumption and labor, and animal waste contributes soil nutrients to the system. Integrated systems' complementarity has contributed to greater soil nutrient cycling and crop yields, fertilizer reduction or elimination, greater yearling steer grazing net return, reduced cow wintering costs grazing crop residues, increased wildlife sightings, and reduced environmental footprint. Therefore, integrating crop and animal systems can reverse soil quality decline and adopting non-traditional procedures has resulted in a wider array of opportunities for sustainable agriculture and profitability.

Drivers of Microbial Metabolic Activity, Biogeochemical Cycling and Associated Greenhouse Gas Production in Streambed Sediments

NASA Astrophysics Data System (ADS)

Comer-Warner, S.; Krause, S.; Gooddy, D.; Blaen, P.; Brekenfeld, N.; Wexler, S.; Kaiser, J.

2017-12-01

Hotspots of enhanced biogeochemical reactivity are produced where groundwater and surface water mixes in streambed sediments. This enhanced reactivity is due to elevated residence times and nutrient concentrations found in these areas, leading to increased rates of microbial metabolic activity. Streambed sediments, therefore, may be important in reducing catchment-wide nutrient concentrations through increased cycling. However, they also have the potential to produce high concentrations of greenhouse gases (CO2, CH4 and N2O), as end-products of respiration and intermediate products of denitrification. The hydrological and biogeochemical drivers of streambed C and N cycling, are still insufficiently understood. Here we present results from biogeochemical sampling and tracer experiments in an agricultural sandstone stream in the UK. Nutrient, DOC and greenhouse gas concentrations, as well as d13CCO2, were measured in the streambed sediment in multilevel piezometers, and nutrient concentrations, as well as d15NNO3 and d18ONO3, were measured in Diffusive Equilibrium in Thin-film Gels. Tracer experiments using both conservative (Fluorescein and NaCl) and smart (Resazurin-Resorufin) tracers were performed to determine in-stream metabolism, transient storage and solute transport times in sub-reaches of the stream. Our results show large differences in nutrient and greenhouse gas concentrations between sub-reaches dominated by gravel sediments and those dominated by sandy sediments, as well as seasonally. This suggests temperature, sediment type and residence time are key controls on streambed nutrient cycling and greenhouse gas production. The results of this study have important implications for future greenhouse gas estimates from streams and rivers, particularly as the contribution of sediment greenhouse gas production is recognised as increasingly significant.

Nitrogen and Phosphorus Plant Uptake During Periods with no Photosynthesis Accounts for About Half of Global Annual Uptake

NASA Astrophysics Data System (ADS)

Riley, W. J.; Zhu, Q.; Tang, J.

2017-12-01

Uncertainties in current Earth System Model (ESM) predictions of terrestrial carbon-climate feedbacks over the 21st century are as large as, or larger than, any other reported natural system uncertainties. Soil Organic Matter (SOM) decomposition and photosynthesis, the dominant fluxes in this regard, are tightly linked through nutrient availability, and the recent Coupled Model Inter-comparison Project 5 (CMIP5) used for climate change assessment had no credible representations of these constraints. In response, many ESM land models (ESMLMs) have developed dynamic and coupled soil and plant nutrient cycles. Here we quantify terrestrial carbon cycle impacts from well-known observed plant nutrient uptake mechanisms ignored in most current ESMLMs. In particular, we estimate the global role of plant root nutrient competition with microbes and abiotic process at night and during the non-growing season using the ACME land model (ALMv1-ECA-CNP) that explicitly represents these dynamics. We first demonstrate that short-term nutrient uptake dynamics and competition between plants and microbes are accurately predicted by the model compared to 15N and 33P isotopic tracer measurements from more than 20 sites. We then show that global nighttime and non-growing season nitrogen and phosphorus uptake accounts for 46 and 45%, respectively, of annual uptake, with large latitudinal variation. Model experiments show that ignoring these plant uptake periods leads to large positive biases in annual N leaching (globally 58%) and N2O emissions (globally 68%). Biases these large will affect modeled carbon cycle dynamics over time, and lead to predictions of ecosystems that have overly open nutrient cycles and therefore lower capacity to sequester carbon.

Evaluating Aquatic Life Benefits of Reducing Nutrient Loading to Remediate Episodic and Diel Cycling Hypoxia in a Shallow Hypereutrophic Estuary

EPA Science Inventory

Theoretical linkages between excess nutrient loading, nutrient-enhanced community metabolism (i.e., production and respiration), and hypoxia in estuaries are well-understood. In seasonally-stratified estuaries and coastal systems (e.g., Chesapeake Bay, northern Gulf of Mexico), h...

Nitrogen cycling processes and microbial community composition in bed sediments in the Yukon River at Pilot Station

USGS Publications Warehouse

Repert, Deborah A.; Underwood, Jennifer C.; Smith, Richard L.; Song, Bongkeun

2014-01-01

Information on the contribution of nitrogen (N)-cycling processes in bed sediments to river nutrient fluxes in large northern latitude river systems is limited. This study examined the relationship between N-cycling processes in bed sediments and N speciation and loading in the Yukon River near its mouth at the Bering Sea. We conducted laboratory bioassays to measure N-cycling processes in sediment samples collected over distinct water cycle seasons. In conjunction, the microbial community composition in the bed sediments using genes involved in N-cycling (narG, napA, nosZ, and amoA) and 16S rRNA gene pyrosequences was examined. Temporal variation was observed in net N mineralization, nitrate uptake, and denitrification rate potentials and correlated strongly with sediment carbon (C) and extractable N content and microbial community composition rather than with river water nutrient concentrations. The C content of the bed sediment was notably impacted by the spring flood, ranging from 1.1% in the midst of an ice-jam to 0.1% immediately after ice-out, suggesting a buildup of organic material (OM) prior to scouring of the bed sediments during ice break up. The dominant members of the microbial community that explained differences in N-processing rates belonged to the genera Crenothrix,Flavobacterium, and the family of Comamonadaceae. Our results suggest that biogeochemical processing rates in the bed sediments appear to be more coupled to hydrology, nutrient availability in the sediments, and microbial community composition rather than river nutrient concentrations at Pilot Station.

Environmental Nutrient Supply Directly Alters Plant Traits but Indirectly Determines Virus Growth Rate

PubMed Central

Lacroix, Christelle; Seabloom, Eric W.; Borer, Elizabeth T.

2017-01-01

Ecological stoichiometry and resource competition theory both predict that nutrient rates and ratios can alter infectious disease dynamics. Pathogens such as viruses hijack nutrient rich host metabolites to complete multiple steps of their epidemiological cycle. As the synthesis of these molecules requires nitrogen (N) and phosphorus (P), environmental supply rates, and ratios of N and P to hosts can directly limit disease dynamics. Environmental nutrient supplies also may alter virus epidemiology indirectly by changing host phenotype or the dynamics of coinfecting pathogens. We tested whether host nutrient supplies and coinfection control pathogen growth within hosts and transmission to new hosts, either directly or through modifications of plant tissue chemistry (i.e., content and stoichiometric ratios of nutrients), host phenotypic traits, or among-pathogen interactions. We examined two widespread plant viruses (BYDV-PAV and CYDV-RPV) in cultivated oats (Avena sativa) grown along a range of N and of P supply rates. N and P supply rates altered plant tissue chemistry and phenotypic traits; however, environmental nutrient supplies and plant tissue content and ratios of nutrients did not directly alter virus titer. Infection with CYDV-RPV altered plant traits and resulted in thicker plant leaves (i.e., higher leaf mass per area) and there was a positive correlation between CYDV-RPV titer and leaf mass per area. CYDV-RPV titer was reduced by the presence of a competitor, BYDV-PAV, and higher CYDV-RPV titer led to more severe chlorotic symptoms. In our experimental conditions, virus transmission was unaffected by nutrient supply rates, co-infection, plant stoichiometry, or plant traits, although nutrient supply rates have been shown to increase infection and coinfection rates. This work provides a robust test of the role of plant nutrient content and ratios in the dynamics of globally important pathogens and reveals a more complex relationship between within-host virus growth and alterations of plant traits. A deeper understanding of the differential effects of environmental nutrient supplies on virus epidemiology and ecology is particularly relevant given the rapid increase of nutrients flowing into Earth's ecosystems as a result of human activities. PMID:29163408

Modeling energy flow and nutrient cycling in natural semiarid grassland ecosystems with the aid of thematic mapper data

NASA Technical Reports Server (NTRS)

Lewis, James K.

1987-01-01

Energy flow and nutrient cycling were modeled as affected by herbivory on selected intensive sites along gradients of precipitation and soils, validating the model output by monitoring selected parameters with data derived from the Thematic Mapper (TM). Herbivore production was modeled along the gradient of soils and herbivory, and validated with data derived from TM in a spatial data base.

The CARIACO Ocean Time-Series: two decades of oceanographic observations to understand linkages between biogeochemistry, ecology, and long-term environmental variability.

NASA Astrophysics Data System (ADS)

Lorenzoni, L.; Muller-Karger, F. E.; Rueda-Roa, D. T.; Thunell, R.; Scranton, M. I.; Taylor, G. T.; benitez-Nelson, C. R.; Montes, E.; Astor, Y. M.; Rojas, J.

2016-02-01

The CARIACO Ocean Time-Series project, located in the Cariaco Basin off the coast of Venezuela, seeks to understand relationships between hydrography, primary production, community composition, microbial activity, particle fluxes, and element cycling in the water column, and how variations in these processes are preserved in sediments accumulating in this anoxic basin. CARIACO uses autonomous and shipboard measurements to understand ecological and biogeochemical changes and how these relate to regional and global climatic/ocean variability. CARIACO is a model for national ocean observing programs in Central/South America, and has been developed as a community facility platform with open access to all data (http://imars.marine.usf.edu/cariaco). Research resulting from this program has contributed to knowledge about the decomposition and cycling of particles, the biological pump, and to our understanding of the ecology and oceanography of oxygen minimum zones. Despite this basin being anoxic below 250m, remineralization rates of organic matter are comparable to those in well oxygenated waters. A dynamic microbial community significantly influences carbon and nutrient biogeochemical cycling throughout the water column. Since 1995, declining particulate organic carbon fluxes have been measured throughout the water column using sediment traps, likely in response to declining Chl-a concentrations and smaller phytoplankton which have replaced the larger taxa over the past decade. This community shift appears to be caused by regional changes in the physical regime. CARIACO also recorded marked long-term changes in surface and deep DIC in response to a combination of factors including surface water warming. The observations of CARIACO highlight the importance of a sustained, holistic approach to studying biodiversity, ecology and the marine carbon cycle to predict potential impacts of climate change on the ocean's ecosystem services and carbon sequestration efficiency.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Espeleta, Javier F.; Cardon, Zoe G.; Mayer, K. Ulrich

Hydro-biogeochemical processes in the rhizosphere regulate nutrient and water availability, and thus ecosystem productivity. We hypothesized that two such processes often neglected in rhizosphere models — diel plant water use and competitive cation exchange — could interact to enhance availability of K + and NH 4 +, both high-demand nutrients. A rhizosphere model with competitive cation exchange was used to investigate how diel plant water use (i.e., daytime transpiration coupled with no nighttime water use, with nighttime root water release, and with nighttime transpiration) affects competitive ion interactions and availability of K + and NH 4 +. Competitive cation exchangemore » enabled lowdemand cations that accumulate against roots (Ca 2+, Mg 2+, Na +) to desorb NH 4 + and K + from soil, generating non-monotonic dissolved concentration profiles (i.e. ‘hotspots’ 0.1–1 cm from the root). Cation accumulation and competitive desorption increased with net root water uptake. Daytime transpiration rate controlled diel variation in NH 4 + and K + aqueous mass, nighttime water use controlled spatial locations of ‘hotspots’, and day-to-night differences in water use controlled diel differences in ‘hotspot’ concentrations. Finally, diel plant water use and competitive cation exchange enhanced NH 4 + and K + availability and influenced rhizosphere concentration dynamics. Demonstrated responses have implications for understanding rhizosphere nutrient cycling and plant nutrient uptake.« less

BELOWGROUND NITROGEN UPTAKE AND ALLOCATION ...

EPA Pesticide Factsheets

Anthropogenic nitrogen inputs coupled with rising sea level complicate predictions of marsh stability. As marsh stability is a function of its vegetation, it is important to understand the mechanisms that drive community dynamics. Many studies have examined aboveground dynamics and nutrient cycling, but few have studied the belowground uptake and allocation of nitrogen. Literature suggests that D. spicata may dominate the marsh platform in nutrient-rich conditions, though the mechanism driving the vegetation shift is unclear. Our study examines belowground nutrient uptake and allocation underlying these patterns. To determine whether D. spicata is a more efficient scavenger of nutrients than S. alterniflora we performed a 15N pulse-chase experiment. Tracer was added to mesocosms growing D. spicata and S. alterniflora in monoculture. After the initial pulse, a subset of pots were sacrificed weekly and partitioned into detailed depth intervals for 15N analysis of several belowground pools: live coarse and fine roots, live rhizomes, dead organic matter, and bulk sediment. Comparisons between D. spicata and S. alterniflora uptake and allocation can explain mechanisms of competitive advantage and predictions of D. spicata dominance. Additionally, we used denitrification enzyme assays (DEA) and greenhouse gas slurries to quantify denitrification rates and potentials. Initial results suggest that the vegetation types support similar N-relevant microbial communities. Th

Microbial community assembly and metabolic function during mammalian corpse decomposition

USGS Publications Warehouse

Metcalf, Jessica L; Xu, Zhenjiang Zech; Weiss, Sophie; Lax, Simon; Van Treuren, Will; Hyde, Embriette R.; Song, Se Jin; Amir, Amnon; Larsen, Peter; Sangwan, Naseer; Haarmann, Daniel; Humphrey, Greg C; Ackermann, Gail; Thompson, Luke R; Lauber, Christian; Bibat, Alexander; Nicholas, Catherine; Gebert, Matthew J; Petrosino, Joseph F; Reed, Sasha C.; Gilbert, Jack A; Lynne, Aaron M; Bucheli, Sibyl R; Carter, David O; Knight, Rob

2016-01-01

Vertebrate corpse decomposition provides an important stage in nutrient cycling in most terrestrial habitats, yet microbially mediated processes are poorly understood. Here we combine deep microbial community characterization, community-level metabolic reconstruction, and soil biogeochemical assessment to understand the principles governing microbial community assembly during decomposition of mouse and human corpses on different soil substrates. We find a suite of bacterial and fungal groups that contribute to nitrogen cycling and a reproducible network of decomposers that emerge on predictable time scales. Our results show that this decomposer community is derived primarily from bulk soil, but key decomposers are ubiquitous in low abundance. Soil type was not a dominant factor driving community development, and the process of decomposition is sufficiently reproducible to offer new opportunities for forensic investigations.

Microbial community assembly and metabolic function during mammalian corpse decomposition

DOE Office of Scientific and Technical Information (OSTI.GOV)

Metcalf, J. L.; Xu, Z. Z.; Weiss, S.

2015-12-10

Vertebrate corpse decomposition provides an important stage in nutrient cycling in most terrestrial habitats, yet microbially mediated processes are poorly understood. Here we combine deep microbial community characterization, community-level metabolic reconstruction, and soil biogeochemical assessment to understand the principles governing microbial community assembly during decomposition of mouse and human corpses on different soil substrates. We find a suite of bacterial and fungal groups that contribute to nitrogen cycling and a reproducible network of decomposers that emerge on predictable time scales. Our results show that this decomposer community is derived primarily from bulk soil, but key decomposers are ubiquitous in lowmore » abundance. Soil type was not a dominant factor driving community development, and the process of decomposition is sufficiently reproducible to offer new opportunities for forensic investigations.« less

Proteomics as a tool to understand the distribution and activity of ammonia-oxidizing archaea

NASA Astrophysics Data System (ADS)

Lundeen, R. A.; Qin, W.; Moffett, J.; Devol, A.; Armbrust, E. V.; Stahl, D.; Ingalls, A. E.

2016-02-01

Nitrification plays a central role in the marine nitrogen cycle and ammonia-oxidizing archaea (AOA) are now known to be the principle microorganisms involved in catalyzing the first step of nitrification in the ocean. Typical AO rate profiles show lower rates in surface waters and increasing rates with depth, reaching a maximum just below the photic zone. Despite numerous observations of this ubiquitous and abundant group, the interactions between environment and AOA genetic capability that shape their natural distribution and activity are largely unknown. Here we use proteomics to study the response of an AOA isolate (Nitrosopulimus maritimus) to environmental stress (e.g., sunlight and low nutrient conditions) in order to understand factors determining AOA distributions. We hypothesize that the activity of marine AOA may be impacted by sunlight and/or competition for nutrients. For instance, harmful ultraviolet radiation can exert stress on cellular machinery by both direct damage and indirect damage caused by photochemically produced reactive oxygen species. Our aim is to elucidate N. maritimus response to varying conditions of environmental stress by surveying protein damage and regulation using shotgun proteomic approaches. Ultimately we will use these tools to assess the status of natural AOA communities to provide a more complete understanding of the environmental factors that influence AOA physiology, activity and biogeography across marine ecosystems.

A global database of nitrogen and phosphorus excretion rates of aquatic animals

DOE PAGES

Vanni, Michael J.; McIntyre, Peter B.; Allen, Dennis; ...

2017-03-06

Though their importance varies greatly among species and ecosystems, animals can be important in modulating ecosystem-level nutrient cycling. Nutrient cycling rates of individual animals represent valuable data for testing the predictions of important frameworks such as the Metabolic Theory of Ecology (MTE) and ecological stoichiometry (ES). They also represent an important set of functional traits that may reflect both environmental and phylogenetic influences. Over the past two decades, studies of animal-mediated nutrient cycling have increased dramatically, especially in aquatic ecosystems. Here we present a global compilation of aquatic animal nutrient excretion rates. The dataset includes 10,534 observations from freshwater andmore » marine animals of N and/or P excretion rates. Furthermore, these observations represent 491 species, including most aquatic phyla. Coverage varies greatly among phyla and other taxonomic levels. The dataset includes information on animal body size, ambient temperature, taxonomic affiliations, and animal body N:P. We used this data set to test predictions of MTE and ES, as described in Vanni and McIntyre (2016; Ecology DOI: 10.1002/ecy.1582).« less

A global database of nitrogen and phosphorus excretion rates of aquatic animals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vanni, Michael J.; McIntyre, Peter B.; Allen, Dennis

Though their importance varies greatly among species and ecosystems, animals can be important in modulating ecosystem-level nutrient cycling. Nutrient cycling rates of individual animals represent valuable data for testing the predictions of important frameworks such as the Metabolic Theory of Ecology (MTE) and ecological stoichiometry (ES). They also represent an important set of functional traits that may reflect both environmental and phylogenetic influences. Over the past two decades, studies of animal-mediated nutrient cycling have increased dramatically, especially in aquatic ecosystems. Here we present a global compilation of aquatic animal nutrient excretion rates. The dataset includes 10,534 observations from freshwater andmore » marine animals of N and/or P excretion rates. Furthermore, these observations represent 491 species, including most aquatic phyla. Coverage varies greatly among phyla and other taxonomic levels. The dataset includes information on animal body size, ambient temperature, taxonomic affiliations, and animal body N:P. We used this data set to test predictions of MTE and ES, as described in Vanni and McIntyre (2016; Ecology DOI: 10.1002/ecy.1582).« less

Response of Soil Biogeochemistry to Freeze-thaw Cycles: Impacts on Greenhouse Gas Emission and Nutrient Fluxes

NASA Astrophysics Data System (ADS)

Rezanezhad, F.; Parsons, C. T.; Smeaton, C. M.; Van Cappellen, P.

2014-12-01

Freeze-thaw is an abiotic stress applied to soils and is a natural process at medium to high latitudes. Freezing and thawing processes influence not only the physical properties of soil, but also the metabolic activity of soil microorganisms. Fungi and bacteria play a crucial role in soil organic matter degradation and the production of greenhouse gases (GHG) such as CO2, CH4 and N2O. Production and consumption of these atmospheric trace gases are the result of biological processes such as photosynthesis, aerobic respiration (CO2), methanogenesis, methanotrophy (CH4), nitrification and denitrification (N2O). To enhance our understanding of the effects of freeze-thaw cycles on soil biogeochemical transformations and fluxes, a highly instrumented soil column experiment was designed to realistically simulate freeze-thaw dynamics under controlled conditions. Pore waters collected periodically from different depths of the column and solid-phase analyses on core material obtained at the initial and end of the experiment highlighted striking geochemical cycling. CO2, CH4 and N2O production at different depths within the column were quantified from dissolved gas concentrations in pore water. Subsequent emissions from the soil surface were determined by direct measurement in the head space. Pulsed CO2 emission to the headspace was observed at the onset of thawing, however, the magnitude of the pulse decreased with each subsequent freeze-thaw cycle indicating depletion of a "freeze-thaw accessible" carbon pool. Pulsed CO2 emission was due to a combination of physical release of gases dissolved in porewater and entrapped below the frozen zone and changing microbial respiration in response to electron acceptor variability (O2, NO3-, SO42-). In this presentation, we focus on soil-specific physical, chemical, microbial factors (e.g. redox conditions, respiration, fermentation) and the mechanisms that drive GHG emission and nutrient cycling in soils under freeze-thaw cycles.

WASP Model Tutorials

EPA Pesticide Factsheets

Contains WASP tutorial videos. WASP Command Line, WASP, Modeling Dissolved Oxygen, Building a Steady State Example, Modeling Nutrients in Rivers, Nutrient Cycles, Interpreting Water Quality Models, Linking with LSPC, WRDB, BASINS, WCS, WASP Network Tool

Nutrient Fluxes From Profundal Sediment of Ultra-Oligotrophic Lake Tahoe, California/Nevada: Implications for Water Quality and Management in a Changing Climate

NASA Astrophysics Data System (ADS)

Beutel, Marc W.; Horne, Alexander J.

2018-03-01

A warming climate is expected to lead to stronger thermal stratification, less frequent deep mixing, and greater potential for bottom water anoxia in deep, temperate oligotrophic lakes. As a result, there is growing interest in understanding nutrient cycling at the profundal sediment-water interface of these rare ecosystems. This paper assessed nutrient content and nutrient flux rates from profundal sediment at Lake Tahoe, California/Nevada, USA. Sediment is a large reservoir of nutrients, with the upper 5 cm containing reduced nitrogen (˜6,300 metric tons) and redox-sensitive phosphorus (˜710 metric tons) equivalent to ˜15 times the annual external load. Experimental results indicate that if deep water in Lake Tahoe goes anoxic, profundal sediment will release appreciable amounts of phosphate (0.13-0.29 mg P/m2·d), ammonia (0.49 mg N/m2·d), and iron to overlaying water. Assuming a 10 year duration of bottom water anoxia followed by a deep-water mixing event, water column phosphate, and ammonia concentrations would increase by an estimated 1.6 µg P/L and 2.9 µg N/L, nearly doubling ambient concentrations. Based on historic nutrient enrichment assays this could lead to a ˜40% increase in algal growth. Iron release could have the dual effect of alleviating nitrate limitation on algal growth while promoting the formation of fine iron oxyhydroxide particles that degrade water clarity. If the depth and frequency of lake mixing decrease in the future as hydrodynamic models suggest, large-scale in-lake management strategies that impede internal nutrient loading in Lake Tahoe, such as bottom water oxygen addition or aluminum salt addition, may need to be considered.

Alteration of dairy cattle diets for beneficial on-farm recycling of manure nutrients

USDA-ARS?s Scientific Manuscript database

Feed and manure nutrients pass through a continuous cycle on dairy farms. Cows are fed forages, grain, protein and mineral supplements to produce milk; land applied manure recycles nutrients through crops and pastures; and so on. The purpose of this chapter is to demonstrate how the types and amount...

Nutrient losses from Fall and Winter-applied manure: Effects of timing and soil temperature

USDA-ARS?s Scientific Manuscript database

Soil temperature is a major environmental factor that affects both the infiltration of meltwater and precipitation, and nutrient cycling. The objectives of this study were to determine nutrient losses in runoff and leachate from fall and winter-applied dairy manure based on the soil temperature at t...

Nutrient losses from fall- and winter-applied manure: effects of timing and soil temperature

USDA-ARS?s Scientific Manuscript database

Soil temperature is a major environmental factor that affects meltwater and precipitation infiltration and nutrient cycling. The objective of this study was to determine nutrient losses in runoff and leachate from fall- and winter-applied dairy manure as affected by soil temperature at the time of a...

Experimental and observational studies find contrasting responses of soil nutrients to climate change

PubMed Central

Yuan, ZY; Jiao, F; Shi, XR; Sardans, Jordi; Maestre, Fernando T; Delgado-Baquerizo, Manuel; Reich, Peter B; Peñuelas, Josep

2017-01-01

Manipulative experiments and observations along environmental gradients, the two most common approaches to evaluate the impacts of climate change on nutrient cycling, are generally assumed to produce similar results, but this assumption has rarely been tested. We did so by conducting a meta-analysis and found that soil nutrients responded differentially to drivers of climate change depending on the approach considered. Soil carbon, nitrogen, and phosphorus concentrations generally decreased with water addition in manipulative experiments but increased with annual precipitation along environmental gradients. Different patterns were also observed between warming experiments and temperature gradients. Our findings provide evidence of inconsistent results and suggest that manipulative experiments may be better predictors of the causal impacts of short-term (months to years) climate change on soil nutrients but environmental gradients may provide better information for long-term correlations (centuries to millennia) between these nutrients and climatic features. Ecosystem models should consequently incorporate both experimental and observational data to properly assess the impacts of climate change on nutrient cycling. DOI: http://dx.doi.org/10.7554/eLife.23255.001 PMID:28570219

Enzyme Sorption onto Soil and Biocarbon Amendments Alters Catalytic Capacity and Depends on the Specific Protein and pH

NASA Astrophysics Data System (ADS)

Foster, E.; Fogle, E. J.; Cotrufo, M. F.

2017-12-01

Enzymes catalyze biogeochemical reactions in soils and play a key role in nutrient cycling in agricultural systems. Often, to increase soil nutrients, agricultural managers add organic amendments and have recently experimented with charcoal-like biocarbon products. These amendments can enhance soil water and nutrient holding capacity through increasing porosity. However, the large surface area of the biocarbon has the potential to sorb nutrients and other organic molecules. Does the biocarbon decrease nutrient cycling through sorption of enzymes? In a laboratory setting, we compared the interaction of two purified enzymes β-glucosidase and acid phosphatase with a sandy clay loam and two biocarbons. We quantified the sorbed enzymes at three different pHs using a Bradford protein assay and then measured the activity of the sorbed enzyme via high-throughput fluorometric analysis. Both sorption and activity depended upon the solid phase, pH, and specific enzyme. Overall the high surface area biocarbon impacted the catalytic capacity of the enzymes more than the loam soil, which may have implications for soil nutrient management with these organic amendments.

Removal of an apex predator initiates a trophic cascade that extends from herbivores to vegetation and the soil nutrient pool

PubMed Central

2017-01-01

It is widely assumed that organisms at low trophic levels, particularly microbes and plants, are essential to basic services in ecosystems, such as nutrient cycling. In theory, apex predators' effects on ecosystems could extend to nutrient cycling and the soil nutrient pool by influencing the intensity and spatial organization of herbivory. Here, we take advantage of a long-term manipulation of dingo abundance across Australia's dingo-proof fence in the Strzelecki Desert to investigate the effects that removal of an apex predator has on herbivore abundance, vegetation and the soil nutrient pool. Results showed that kangaroos were more abundant where dingoes were rare, and effects of kangaroo exclusion on vegetation, and total carbon, total nitrogen and available phosphorus in the soil were marked where dingoes were rare, but negligible where dingoes were common. By showing that a trophic cascade resulting from an apex predator's lethal effects on herbivores extends to the soil nutrient pool, we demonstrate a hitherto unappreciated pathway via which predators can influence nutrient dynamics. A key implication of our study is the vast spatial scale across which apex predators' effects on herbivore populations operate and, in turn, effects on the soil nutrient pool and ecosystem productivity could become manifest. PMID:28490624

Conceptual design and quantification of phosphorus flows and balances at the country scale: The case of France

NASA Astrophysics Data System (ADS)

Senthilkumar, Kalimuthu; Nesme, Thomas; Mollier, Alain; Pellerin, Sylvain

2012-06-01

Global biogeochemical cycles have been deeply modified by human activities in recent decades. But detailed studies analyzing the influence of current economic and social organizations on global biogeochemical cycles within a system perspective are still required. Country level offers a relevant scale for assessing nutrient management and identifying key driving forces and possible leaks in the nutrient cycle. Conceptual modeling helps to quantify nutrient flows within the country and we developed such an approach for France. France is a typical Western European country with intensive agriculture, trade and an affluent diet, all of which may increase internal and external P flows. Phosphorus (P) was taken as a case study because phosphate rock is a non-renewable resource which future availability is becoming increasingly bleak. A conceptual model of major P flows at the country scale was designed. France was divided into agriculture, industry, domestic, import and export sectors, and each of these sectors was further divided into compartments. A total of 25 internal and eight external P flows were identified and quantified on a yearly basis for a period of 16 years (from 1990 to 2006) in order to understand long-term P flows. All the P flows were quantified using the substance flow analysis principle. The results showed that the industrial sector remained the largest contributor to P flows in France, followed by the agriculture and domestic sectors. Soil P balance was positive. However, a positive P balance of 18 kg P ha-1 in 1990 was reduced to 4 kg P ha-1 in 2006, mainly due to the reduced application of inorganic P fertilizer. The overall country scale P balance was positive, whereas half of this additional P was lost to the environment mainly through the landfilling of municipal and industrial waste, disposal of treated wastewater from which P was partially removed, and P losses from agricultural soils though erosion and leaching. Consequences for global P resources and soil and water compartments are discussed. Some opportunities to more effectively close the P cycle in France by both improving the intensity of P recycling and decreasing losses are quantified.

Yield and Water Quality Impacts of Field-Scale Integration of Willow into a Continuous Corn Rotation System.

PubMed

Zumpf, Colleen; Ssegane, Herbert; Negri, Maria Cristina; Campbell, Patty; Cacho, Julian

2017-07-01

Agricultural landscape design has gained recognition by the international environmental and development community as a strategy to address multiple goals in land, water, and ecosystem service management; however, field research is needed to quantify impacts on specific local environments. The production of bioenergy crops in specific landscape positions within a grain-crop field can serve the dual purpose of producing cellulosic biomass (nutrient recovery) while also providing regulating ecosystem services to improve water quality (nutrient reduction). The effectiveness of such a landscape design was evaluated by the strategic placement of a 0.8-ha short-rotation shrub willow ( Seemen) bioenergy buffer along marginal soils in a 6.5-ha corn ( L.) field in a 6-yr field study in central Illinois. The impact of willow integration on water quality (soil water, shallow groundwater leaching, and crop nutrient uptake) and quantity (soil moisture and transpiration) was monitored in comparison with corn in the willow's first cycle of growth. Willows significantly reduced nitrate leachate in shallow subsurface water by 88% while maintaining adequate nutrient and water usage. Results suggest that willows offer an efficient nutrient-reduction strategy and may provide additional ecosystem services and benefits, including enhanced soil health. However, low values for calculated willow biomass will need to be readdressed in the future as harvest data become available to understand contributing factors that affected productivity beyond nutrient availability. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Nitrogen and Phosphorus Budgets in the Northwestern Mediterranean Deep Convection Region

NASA Astrophysics Data System (ADS)

Kessouri, Faycal; Ulses, Caroline; Estournel, Claude; Marsaleix, Patrick; Severin, Tatiana; Pujo-Pay, Mireille; Caparros, Jocelyne; Raimbault, Patrick; Pasqueron de Fommervault, Orens; D'Ortenzio, Fabrizio; Taillandier, Vincent; Testor, Pierre; Conan, Pascal

2017-12-01

The aim of this study is to understand the biogeochemical cycles of the northwestern Mediterranean Sea (NW Med), where a recurrent spring bloom related to dense water formation occurs. We used a coupled physical-biogeochemical model at high resolution to simulate realistic 1 year period and analyze the nitrogen (N) and phosphorus (P) cycles. First, the model was evaluated using cruises carried out in winter, spring, and summer and a Bio-Argo float deployed in spring. Then, the annual cycle of meteorological and hydrodynamical forcing and nutrients stocks in the upper layer were analyzed. Third, the effect of biogeochemical and physical processes on N and P was quantified. Fourth, we quantified the effects of the physical and biological processes on the seasonal changes of the molar NO3:PO4 ratio, particularly high compared to the global ocean. The deep convection reduced the NO3:PO4 ratio of upper waters, but consumption by phytoplankton increased it. Finally, N and P budgets were estimated. At the annual scale, this area constituted a sink of inorganic and a source of organic N and P for the peripheral area. NO3 and PO4 were horizontally advected from the peripheral regions into the intermediate waters (130-800 m) of the deep convection area, while organic matter was exported throughout the whole water column toward the surrounding areas. The annual budget suggests that the NW Med deep convection constitutes a major source of nutrients for the photic zone of the Mediterranean Sea.

Terrestrial biogeochemical cycles: global interactions with the atmosphere and hydrology

NASA Astrophysics Data System (ADS)

Schimel, David S.; Kittel, Timothy G. F.; Parton, William J.

1991-08-01

Ecosystem scientists have developed a body of theory to predict the behaviour of biogeochemical cycles when exchanges with other ecosystems are small or prescribed. Recent environmental changes make it clear that linkages between ecosystems via atmospheric and hydrological transport have large effects on ecosystem dynamics when considered over time periods of a decade to a century, time scales relevant to contemporary humankind. Our ability to predict behaviour of ecosystems coupled by transport is limited by our ability (1) to extrapolate biotic function to large spatial scales and (2) to measure and model transport. We review developments in ecosystem theory, remote sensing, and geographical information systems (GIS) that support new efforts in spatial modeling. A paradigm has emerged to predict behaviour of ecosystems based on understanding responses to multiple resources (e.g., water, nutrients, light). Several ecosystem models couple primary production to decomposition and nutrient availability using the above paradigm. These models require a fairly small set of environmental variables to simulate spatial and temporal variation in rates of biogeochemical cycling. Simultaneously, techniques for inferring ecosystem behaviour from remotely measured canopy light interception are improving our ability to infer plant activity from satellite observations. Efforts have begun to couple models of transport in air and water to models of ecosystem function. Preliminary work indicates that coupling of transport and ecosystem processes alters the behaviour of earth system components (hydrology, terrestrial ecosystems, and the atmosphere) from that of an uncoupled mode.

Vertical Distribution of Soil Denitrifying Communities in a Wet Sclerophyll Forest under Long-Term Repeated Burning.

PubMed

Liu, Xian; Chen, Chengrong; Wang, Weijin; Hughes, Jane M; Lewis, Tom; Hou, Enqing; Shen, Jupei

2015-11-01

Soil biogeochemical cycles are largely mediated by microorganisms, while fire significantly modifies biogeochemical cycles mainly via altering microbial community and substrate availability. Majority of studies on fire effects have focused on the surface soil; therefore, our understanding of the vertical distribution of microbial communities and the impacts of fire on nitrogen (N) dynamics in the soil profile is limited. Here, we examined the changes of soil denitrification capacity (DNC) and denitrifying communities with depth under different burning regimes, and their interaction with environmental gradients along the soil profile. Results showed that soil depth had a more pronounced impact than the burning treatment on the bacterial community size. The abundance of 16S rRNA and denitrification genes (narG, nirK, and nirS) declined exponentially with soil depth. Surprisingly, the nosZ-harboring denitrifiers were enriched in the deeper soil layers, which was likely to indicate that the nosZ-harboring denitrifiers could better adapt to the stress conditions (i.e., oxygen deficiency, nutrient limitation, etc.) than other denitrifiers. Soil nutrients, including dissolved organic carbon (DOC), total soluble N (TSN), ammonium (NH(4)(+)), and nitrate (NO(3)(-)), declined significantly with soil depth, which probably contributed to the vertical distribution of denitrifying communities. Soil DNC decreased significantly with soil depth, which was negligible in the depths below 20 cm. These findings have provided new insights into niche separation of the N-cycling functional guilds along the soil profile, under a varied fire disturbance regime.

Water and nutrient budgets for Vancouver Lake, Vancouver, Washington, October 2010-October 2012

USGS Publications Warehouse

Sheibley, Rich W.; Foreman, James R.; Marshall, Cameron A.; Welch, Wendy B.

2014-01-01

Vancouver Lake, a large shallow lake in Clark County, near Vancouver, Washington, has been undergoing water-quality problems for decades. Recently, the biggest concern for the lake are the almost annual harmful cyanobacteria blooms that cause the lake to close for recreation for several weeks each summer. Despite decades of interest in improving the water quality of the lake, fundamental information on the timing and amount of water and nutrients entering and exiting the lake is lacking. In 2010, the U.S. Geological Survey conducted a 2-year field study to quantify water flows and nutrient loads in order to develop water and nutrient budgets for the lake. This report presents monthly and annual water and nutrient budgets from October 2010–October 2012 to identify major sources and sinks of nutrients. Lake River, a tidally influenced tributary to the lake, flows into and out of the lake almost daily and composed the greatest proportion of both the water and nutrient budgets for the lake, often at orders of magnitude greater than any other source. From the water budget, we identified precipitation, evaporation and groundwater inflow as minor components of the lake hydrologic cycle, each contributing 1 percent or less to the total water budget. Nutrient budgets were compiled monthly and annually for total nitrogen, total phosphorus, and orthophosphate; and, nitrogen loads were generally an order of magnitude greater than phosphorus loads across all sources. For total nitrogen, flow from Lake River at Felida, Washington, made up 88 percent of all inputs into the lake. For total phosphorus and orthophosphate, Lake River at Felida flowing into the lake was 91 and 76 percent of total inputs, respectively. Nutrient loads from precipitation and groundwater inflow were 1 percent or less of the total budgets. Nutrient inputs from Burnt Bridge Creek and Flushing Channel composed 12 percent of the total nitrogen budget, 8 percent of the total phosphorus budget, and 21 percent of the orthophosphate budget. We identified several data gaps and areas for future research, which include the need for better understanding nutrient inputs to the lake from sediment resuspension and better quantification of indirect nutrient inputs to the lake from Salmon Creek.

Macroalgae, nutrient cycles, and pollutants in the lagoon of Venice

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sfriso, A.; Pavoni, B.; Marcomini, A.

1992-12-01

The Lagoon of Venice is a wide, shallow coastal basin that extends for about 50 km along the northwest coast of the Adriatic Sea. The lagoon has been substantially modified through the actions of man over the last century through the artificial control of the hydraulic dynamics of the lagoon including the construction of channels to facilitate navigation. The lagoon is subjected to considerable pollutant loading through the drainage of land under cultivation, municipal sewage, and industrial effluents. In this paper are reported the results of observations designed to document recent changes in macroalgal species composition, seasonal cycles of primarymore » producers and nutrient levels, and the effects of the macroalgal community on concentrations of organic and inorganic pollutants. The dominant macroalgae in the lagoon was Ulva rigida, and the levels of plant nutrients and pollutants were influenced by the seasonal cycles of the macroalgal community. 44 refs., 11 figs., 2 tabs.« less

Oribatid mites and nutrient cycling. [Nutrient release by decomposition of leaf litter

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crossley, D.A. Jr.

1976-08-01

Communities of oribatid mites (Cryptostigmata) in leaf litter and forest soils consist of an impressive number of individuals. Total populations of the order of 10/sup 5/ oribatids per square meter are commonly reported from forest floors. Because of their numbers, oribatids have been believed to be important contributors to the breakdown of organic detritus. Results are reported from studies of mineral or nutrient element cycling in forest floor ecosystems using radioisotopes as tracers. The phenomenon of cycling allows for the study of feedback loops among ecosystem processes, whereas energy flow is unidirectional. Evaluation of feedback loops can be a meansmore » of quantifying indirect effects of consumers. The availability of radioactive isotopes or radioactive analogs of mineral elements allows for the direct measurement of transfer rates. In decomposition studies applications of radioactive tracers have helped to identify pathways of transfer from microflora to oribatids.« less

Towards better monitoring of technology critical elements in Europe: Coupling of natural and anthropogenic cycles.

PubMed

Nuss, Philip; Blengini, Gian Andrea

2018-02-01

The characterization of elemental cycles has a rich history in biogeochemistry. Well known examples include the global carbon cycle, or the cycles of the 'grand nutrients' nitrogen, phosphorus, and sulfur. More recently, efforts have increased to better understand the natural cycling of technology critical elements (TCEs), i.e. elements with a high supply risk and economic importance in the EU. On the other hand, tools such as material-flow analysis (MFA) can help to understand how substances and goods are transported and accumulated in man-made technological systems ('anthroposphere'). However, to date both biogeochemical cycles and MFA studies suffer from narrow system boundaries, failing to fully illustrate relative anthropogenic and natural flow magnitude and the degree to which human activity has perturbed the natural cycling of elements. We discuss important interconnections between natural and anthropogenic cycles and relevant EU raw material dossiers. Increased integration of both cycles could help to better capture the transport and fate of elements in nature including their environmental/human health impacts, highlight potential future material stocks in the anthroposphere (in-use stocks) and in nature (e.g., in soils, tailings, or mining wastes), and estimate anticipated emissions of TCEs to nature in the future (based on dynamic stock modeling). A preliminary assessment of natural versus anthropogenic element fluxes indicates that anthropogenic fluxes induced by the EU-28 of palladium, platinum, and antimony (as a result of materials uses) might be greater than the respective global natural fluxes. Increased combination of MFA and natural cycle data at EU level could help to derive more complete material cycles and initiate a discussion between the research communities of biogeochemists and material flow analysts to more holistically address the issues of sustainable resource management. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

PubMed Central

Zhao, Mengxin; Xue, Kai; Wang, Feng; Liu, Shanshan; Bai, Shijie; Sun, Bo; Zhou, Jizhong; Yang, Yunfeng

2014-01-01

Despite microbes' key roles in driving biogeochemical cycles, the mechanism of microbe-mediated feedbacks to global changes remains elusive. Recently, soil transplant has been successfully established as a proxy to simulate climate changes, as the current trend of global warming coherently causes range shifts toward higher latitudes. Four years after southward soil transplant over large transects in China, we found that microbial functional diversity was increased, in addition to concurrent changes in microbial biomass, soil nutrient content and functional processes involved in the nitrogen cycle. However, soil transplant effects could be overridden by maize cropping, which was attributed to a negative interaction. Strikingly, abundances of nitrogen and carbon cycle genes were increased by these field experiments simulating global change, coinciding with higher soil nitrification potential and carbon dioxide (CO2) efflux. Further investigation revealed strong correlations between carbon cycle genes and CO2 efflux in bare soil but not cropped soil, and between nitrogen cycle genes and nitrification. These findings suggest that changes of soil carbon and nitrogen cycles by soil transplant and cropping were predictable by measuring microbial functional potentials, contributing to a better mechanistic understanding of these soil functional processes and suggesting a potential to incorporate microbial communities in greenhouse gas emission modeling. PMID:24694714

Effects of mountain agriculture on nutrient cycling at upstream watersheds

NASA Astrophysics Data System (ADS)

Lin, T.-C.; Shaner, P. L.; Wang, L.-J.; Shih, Y.-T.; Wang, C.-P.; Huang, G.-H.; Huang, J.-C.

2015-05-01

The expansion of agriculture to rugged mountains can exacerbate negative impacts of agriculture activities on ecosystem function. In this study, we monitored streamwater chemistry of four watersheds with varying proportions of agricultural lands (0.4, 3, 17, 22%) and rainfall chemistry of two of the four watersheds at Feitsui Reservoir Watershed in northern Taiwan to examine the effects of agriculture on watershed nutrient cycling. We found that the greater the proportions of agricultural lands, the higher the ion concentrations, which is evident for fertilizer-associated ions (NO3-, K+) but not for ions that are rich in soils (SO42-, Ca2+, Mg2+), suggesting that agriculture enriched fertilizer-associated nutrients in streamwater. The watershed with the highest proportion of agricultural lands had higher concentrations of ions in rainfall and lower nutrient retention capacity (i.e. higher output-input ratio of ions) compared to the relatively pristine watershed, suggesting that agriculture can influence atmospheric deposition of nutrients and a system's ability to retain nutrients. Furthermore, we found that a forested watershed downstream of agricultural activities can dilute the concentrations of fertilizer-associated ions (NO3-, K+) in streamwater by more than 70%, indicating that specific landscape configurations help mitigate nutrient enrichment to aquatic systems. We estimated that agricultural lands at our study site contributed approximately 400 kg ha-1 yr-1 of NO3-N and 260 kg ha-1 yr-1 of PO4-P output via streamwater, an order of magnitude greater than previously reported around the globe and can only be matched by areas under intense fertilizer use. Furthermore, we re-constructed watershed nutrient fluxes to show that excessive leaching of N and P, and additional loss of N to the atmosphere via volatilization and denitrification, can occur under intense fertilizer use. In summary, this study demonstrated the pervasive impacts of agriculture activities, especially excessive fertilization, on ecosystem nutrient cycling at mountain watersheds.

ORCHIDEE-CNP: Site-Scale Evaluation against Observations from a Soil Formation Chronosequence in Hawaii

NASA Astrophysics Data System (ADS)

Goll, D. S.; Vuichard, N.; Maignan, F.; Jornet-Puig, A.; Sardans, J.; Peng, S.; Sun, Y.; Kvakić, M.; Guimberteau, M.; Guenet, B.; Zaehle, S.; Penuelas, J.; Jannssens, I.; Ciais, P.

2017-12-01

Land surface models rarely incorporate the terrestrial phosphorus cycle and its interactions with the carbon cycle, despite the extensive scientific debate about the importance of nitrogen and phosphorus supply for future land carbon uptake. We describe a representation of the terrestrial phosphorus cycle for the land surface model ORCHIDEE, and evaluate it with data from nutrient manipulation experiments along a soil formation chronosequence in Hawaii. ORCHIDEE accounts for influence of nutritional state of vegetation on tissue nutrient concentrations, photosynthesis, plant growth, biomass allocation, biochemical (phosphatase-mediated) mineralization and biological nitrogen fixation. Changes in nutrient content (quality) of litter affect the carbon use efficiency of decomposition and in return the nutrient availability to vegetation. The model explicitly accounts for root zone depletion of phosphorus as a function of root phosphorus uptake and phosphorus transport from soil to the root surface. The model captures the observed differences in the foliage stoichiometry of vegetation between an early (300yr) and a late stage (4.1 Myr) of soil development. The contrasting sensitivities of net primary productivity to the addition of either nitrogen, phosphorus or both among sites are in general reproduced by the model. As observed, the model simulates a preferential stimulation of leaf level productivity when nitrogen stress is alleviated, while leaf level productivity and leaf area index are stimulated equally when phosphorus stress is alleviated. The nutrient use efficiencies in the model are lower as observed primarily due to biases in the nutrient content and turnover of woody biomass.

Breakthroughs in the biogeochemistry of Nordic aquatic systems: Lessons from Water's Journey from Rain to Stream

NASA Astrophysics Data System (ADS)

Bishop, Kevin

2015-04-01

A sustainable society has been said to require knowledge of the limits placed by nature. Whatever one's views on the know-ability and significance of such limits, science strives to improve our understanding of these limiting factors, of which water is recognized to be one of the most important. Despite the centrality of water, the water cycle is maddeningly difficulty to pin down with the level of detail that is desired for resolving issues about the fate of pollutants, nutrient cycling and the global carbon balance, etc. But there is hope lurking in the Swedish landscape. The simplicity of hydrology in many Fennoscandian till soils, combined with applications of the only true tracers of water (isotopes of the water molecule) that were pioneered by Uppsala University hydrologists -provide a hydrological basis for breakthroughs in the biogeochemistry of critical earth support systems. This talk will explore some recent advances in understanding both pollutants and natural cycles, with linkages back to the concepts presented in the Water's Journey from Rain to Stream by Harald Grip and Allan Rodhe. The examples will include the mercury, acidity, and biogenic carbon of relevance to the "aquatic conduit" in the global carbon cycle. The talk will finish with thoughts about where to go next with the power that a well-characterized hydrology can provide.

Spatio-temporal dynamics in phytobenthos structural properties reveal insights into agricultural catchment dynamics and nutrient fluxes

NASA Astrophysics Data System (ADS)

Reaney, S. M.; Snell, M. A.; Barker, P. A.; Aftab, A.; Barber, N. J.; Benskin, C.; Burke, S.; Cleasby, W.; Haygarth, P.; Jonczyk, J. C.; Owen, G. J.; Perks, M. T.; Quinn, P. F.; Surridge, B.

2016-12-01

Low order streams are spatially extensive, temporally dynamic, systems within the agricultural landscape. This dynamism extends to the aquatic communities within these streams, including the phytobentos, which demonstrates considerable resilience to diffuse anthropogenic nutrient pressures and changing climate dynamics. The phytobenthos community can substantially contribute to the food web, in particular diatoms, which dominate photo-autotrophic assemblages in low order streams. Diatoms are widely used in ecological monitoring because of their high sensitivity to environmental condition, but knowledge is limited on the ecological effects of winter disturbances and variance introduced by multiple and interacting pressures (N, P, sediment), introducing bias in understanding temporal dynamics in benthic diatom communities. Using the environmental time series data from long term monitoring within the River Eden Demonstration Test Catchment programme, we assess the impact of multiple hydro-chemical stressors on phytobenthic community resilience, and synthesize the impact of an extreme winter event. Monthly data from diatom communities collected in the Eden DTC from March 2011 to present show that river flow, strongly coupled to precipitation, is a key driver of these communities. Discharge has a direct effect on communities through scouring, but is also tightly correlated to nutrient delivery, such that 80% of the annual TP load arrives in 10% of the time. Trophic Diatom Index (TDI) values demonstrated considerable resilience by the stability of inter-monthly TDI scores over 5 seasonal cycles against the characterised highly variable hydrological regime. This research demonstrates that well characterised winter disturbances are critical to understanding drivers of aquatic dynamics. This has implications for catchment diffuse pollution policy, farm management and economics, given the climate projections of increases in frequency and intensity of extreme winter events, which may alter instream nutrient fluxes.

Mississippi Basin Carbon Project science plan

USGS Publications Warehouse

Sundquist, E.T.; Stallard, R.F.; Bliss, N.B.; Markewich, H.W.; Harden, J.W.; Pavich, M.J.; Dean, M.D.

1998-01-01

Understanding the carbon cycle is one of the most difficult challenges facing scientists who study the global environment. Lack of understanding of global carbon cycling is perhaps best illustrated by our inability to balance the present-day global CO2 budget. The amount of CO2 produced by burning fossil fuels and by deforestation appears to exceed the amount accumulating in the atmosphere and oceans. The carbon needed to balance the CO2 budget (the so-called "missing" carbon) is probably absorbed by land plants and ultimately deposited in soils and sediments. Increasing evidence points toward the importance of these terrestrial processes in northern temperate latitudes. Thus, efforts to balance the global CO2 budget focus particular attention on terrestrial carbon uptake in our own North American "backyard."The USGS Mississippi Basin Carbon Project conducts research on the carbon budget in soils and sediments of the Mississippi River basin. The project focuses on the effects of land-use change on carbon storage and transport, nutrient cycles, and erosion and sedimentation throughout the Mississippi River Basin. Particular emphasis is placed on understanding the interactions among changes in erosion, sedimentation, and soil dynamics. The project includes spatial analysis of a wide variety of geographic data sets, estimation of whole-basin and sub-basin carbon and sediment budgets, development and implementation of terrestrial carbon-cycle models, and site-specific field studies of relevant processes. The USGS views this project as a "flagship" effort to demonstrate its capabilities to address the importance of the land surface to biogeochemical problems such as the global carbon budget.

Microbial activity in the marine deep biosphere: progress and prospects.

PubMed

Orcutt, Beth N; Larowe, Douglas E; Biddle, Jennifer F; Colwell, Frederick S; Glazer, Brian T; Reese, Brandi Kiel; Kirkpatrick, John B; Lapham, Laura L; Mills, Heath J; Sylvan, Jason B; Wankel, Scott D; Wheat, C Geoff

2013-01-01

The vast marine deep biosphere consists of microbial habitats within sediment, pore waters, upper basaltic crust and the fluids that circulate throughout it. A wide range of temperature, pressure, pH, and electron donor and acceptor conditions exists-all of which can combine to affect carbon and nutrient cycling and result in gradients on spatial scales ranging from millimeters to kilometers. Diverse and mostly uncharacterized microorganisms live in these habitats, and potentially play a role in mediating global scale biogeochemical processes. Quantifying the rates at which microbial activity in the subsurface occurs is a challenging endeavor, yet developing an understanding of these rates is essential to determine the impact of subsurface life on Earth's global biogeochemical cycles, and for understanding how microorganisms in these "extreme" environments survive (or even thrive). Here, we synthesize recent advances and discoveries pertaining to microbial activity in the marine deep subsurface, and we highlight topics about which there is still little understanding and suggest potential paths forward to address them. This publication is the result of a workshop held in August 2012 by the NSF-funded Center for Dark Energy Biosphere Investigations (C-DEBI) "theme team" on microbial activity (www.darkenergybiosphere.org).

Microbial activity in the marine deep biosphere: progress and prospects

PubMed Central

Orcutt, Beth N.; LaRowe, Douglas E.; Biddle, Jennifer F.; Colwell, Frederick S.; Glazer, Brian T.; Reese, Brandi Kiel; Kirkpatrick, John B.; Lapham, Laura L.; Mills, Heath J.; Sylvan, Jason B.; Wankel, Scott D.; Wheat, C. Geoff

2013-01-01

The vast marine deep biosphere consists of microbial habitats within sediment, pore waters, upper basaltic crust and the fluids that circulate throughout it. A wide range of temperature, pressure, pH, and electron donor and acceptor conditions exists—all of which can combine to affect carbon and nutrient cycling and result in gradients on spatial scales ranging from millimeters to kilometers. Diverse and mostly uncharacterized microorganisms live in these habitats, and potentially play a role in mediating global scale biogeochemical processes. Quantifying the rates at which microbial activity in the subsurface occurs is a challenging endeavor, yet developing an understanding of these rates is essential to determine the impact of subsurface life on Earth's global biogeochemical cycles, and for understanding how microorganisms in these “extreme” environments survive (or even thrive). Here, we synthesize recent advances and discoveries pertaining to microbial activity in the marine deep subsurface, and we highlight topics about which there is still little understanding and suggest potential paths forward to address them. This publication is the result of a workshop held in August 2012 by the NSF-funded Center for Dark Energy Biosphere Investigations (C-DEBI) “theme team” on microbial activity (www.darkenergybiosphere.org). PMID:23874326

Choice of mineral fertilizer substitution principle strongly influences LCA environmental benefits of nutrient cycling in the agri-food system.

PubMed

Hanserud, Ola Stedje; Cherubini, Francesco; Øgaard, Anne Falk; Müller, Daniel B; Brattebø, Helge

2018-02-15

Increased nutrient cycling in the agri-food system is a way to achieve a healthier nutrient stewardship and more sustainable food production. In life cycle assessment (LCA) studies, use of recycled fertilizer products is often credited by the substitution method, which subtracts the environmental burdens associated with avoided production of mineral fertilizer from the system under study. The environmental benefits from avoided fertilizer production can make an important contribution to the results, but different calculation principles and often implicit assumptions are used to estimate the amount of avoided mineral fertilizer. This may hinder comparisons between studies. The present study therefore examines how the choice of substitution principles influences LCA results. Three different substitution principles, called one-to-one, maintenance, and adjusted maintenance, are identified, and we test the importance of these in a case study on cattle slurry management. We show that the inventory of avoided mineral fertilizer varies greatly when the different principles are applied, with strong influences on two-thirds of LCA impact categories. With the one-to-one principle, there is a risk of systematically over-estimating the environmental benefits from nutrient cycling. In a sensitivity analysis we show that the difference between the principles is closely related to the application rate and levels of residual nutrients in the soil. We recommend that LCA practitioners first and foremost state and justify the substitution method they use, in order to increase transparency and comparability with other studies. Copyright © 2017 Elsevier B.V. All rights reserved.

Using Hyperspectral Aircraft Remote Sensing to Support Ecosystems Services Research in New England Lakes and Ponds

NASA Astrophysics Data System (ADS)

Keith, D. J.; Milstead, B.; Walker, H.; Worthy, D.; Szykman, J.; Wusk, M.; Kagey, L.; Howell, C.; Snook, H.; Drueke, C.

2010-12-01

Northeastern lakes and ponds provide important ecosystem services to New England residents and visitors. These include the provisioning of abundant, clean water for consumption, agriculture, and industry as well as cultural services (recreation, aesthetics, and wilderness experiences) which enhance local economies and quality of life. Less understood, but equally important, are the roles that these lakes play in protecting all life through supportive services such as nutrient cycling. Nitrogen and phosphorus have a direct impact on the condition of fresh water lakes. Excesses of these nutrients can lead to eutrophication, toxic cyanobacteria blooms, decreased biodiversity, and loss of ecosystem function leading to a reduction in the availability and delivery of ecosystem services. In this study, we examined how variations in lake nutrient concentrations and phytoplankton pigment concentrations correlated with changes in the potential to provide cultural ecosystem services. Using a NASA Cessna 206 aircraft, hyperspectral data were collected during late summer 2009 from 55 lakes in New Hampshire, Massachusetts, Connecticut, and Rhode Island over a 2 day period. From the spectral data, algorithms were created which estimated concentrations of chlorophyll a, phycocyanin, and colored dissolved organic matter. The remotely sensed estimates were supplemented by in situ chlorophyll a, total nitrogen, total phosphorus and lake color data from 43 lakes sampled by field crews from the New England states. The purpose of this research is to understand how variations in lake nutrient concentrations and phytoplankton pigment concentrations correlate with changes in availability of cultural ecosystem services in the surveyed lakes. This dataset will be combined with information from the EPA National Lake Survey (2007), the EPA New England Lakes and Ponds Survey (2008) and the USGS SPARROW model to explore the association between lake condition and the provisioning of ecosystem services on a regional scale. Under the EPA Ecological Services Research Program (ESRP), this information will provide managers and researchers with a better understanding of links between management decisions affecting nutrient fluxes and impacts on selected ecosystem services.

Cracking the Code of Soil Genesis. The Early Role of Rare Earth Elements

NASA Astrophysics Data System (ADS)

Zaharescu, D. G.; Dontsova, K.; Burghelea, C. I.; Maier, R. M.; Huxman, T. E.; Chorover, J.

2014-12-01

Soil is terrestrial life support system. Its genesis involves tight interactions between biota and mineral surfaces that mobilize structural elements into biogeochemical cycles. Of all chemical elements rare earth elements (REE) are a group of 16 non-nutrient elements of unusual geochemical similarity and present in all components of the surface environment. While much is known about the role of major nutrients in soil development we lack vital understanding of how early biotic colonization affects more conservative elements such as REE. A highly controlled experiment was set up at University of Arizona's Biosphere-2 that tested the effect of 4 biological treatments, incorporating a combination of microbe, grass, mycorrhiza and uninoculated control on REE leaching and uptake in 4 bedrock substrates: basalt, rhyolite, granite and schist. Generally the response of REE to biota presence was synergistic. Variation in total bedrock chemistry could explain major trends in pore water REE. There was a fast transition from chemistry-dominated to a biota dominated environment in the first 3-4 months of inoculation/seeding which translated into increase in REE signal over time. Relative REE abundances in water were generally reflected in plant concentrations, particularly in root, implying that below ground biomass is the main sync of REE in the ecosystem. Mycorrhiza effect on REE uptake in plant organs was significant and increased with infection rates. Presence of different biota translated into subtle differences in REE release, reveling potential biosignatures of biolota-rock colonization. The results thus bring fundamental insight into early stages non-nutrient cycle and soil genesis.

Effects of canopy tree species on belowground biogeochemistry in a lowland wet tropical forest

USGS Publications Warehouse

Keller, Adrienne B.; Reed, Sasha C.; Townsend, Alan R.; Cleveland, Cory C.

2013-01-01

Tropical rain forests are known for their high biological diversity, but the effects of plant diversity on important ecosystem processes in this biome remain unclear. Interspecies differences in both the demand for nutrients and in foliar and litter nutrient concentrations could drive variations in both the pool sizes and fluxes of important belowground resources, yet our understanding of the effects and importance of aboveground heterogeneity on belowground biogeochemistry is poor, especially in the species-rich forests of the wet tropics. To investigate the effects of individual tree species on belowground biogeochemical processes, we used both field and laboratory studies to examine how carbon (C), nitrogen (N), and phosphorus (P) cycles vary under nine different canopy tree species – including three legume and six non-legume species – that vary in foliar nutrient concentrations in a wet tropical forest in southwestern Costa Rica. We found significant differences in belowground C, N and P cycling under different canopy tree species: total C, N and P pools in standing litter varied by species, as did total soil and microbial C and N pools. Rates of soil extracellular acid phosphatase activity also varied significantly among species and functional groups, with higher rates of phosphatase activity under legumes. In addition, across all tree species, phosphatase activity was significantly positively correlated with litter N/P ratios, suggesting a tight coupling between relative N and P inputs and resource allocation to P acquisition. Overall, our results suggest the importance of aboveground plant community composition in promoting belowground biogeochemical heterogeneity at relatively small spatial scales.

Crustal tracers in the atmosphere and ocean: Relating their concentrations, fluxes, and ages

NASA Astrophysics Data System (ADS)

Han, Qin

Crustal tracers are important sources of key limiting nutrients (e.g., iron) in remote ocean regions where they have a large impact on global biogeochemical cycles. However, the atmospheric delivery of bio-available iron to oceans via mineral dust aerosol deposition is poorly constrained. This dissertation aims to improve understanding and model representation of oceanic dust deposition and to provide soluble iron flux maps by testing observations of crustal tracer concentrations and solubilities against predictions from two conceptual solubility models. First, we assemble a database of ocean surface dissolved Al and incorporate Al cycling into the global Biogeochemical Elemental Cycling (BEC) model. The observed Al concentrations show clear basin-scale differences that are useful for constraining dust deposition. The dynamic mixed layer depth and Al residence time in the BEC model significantly improve the simulated dissolved Al field. Some of the remaining model-data discrepancies appear related to the neglect of aerosol size, age, and air mass characteristics in estimating tracer solubility. Next, we develop the Mass-Age Tracking method (MAT) to efficiently and accurately estimate the mass-weighted age of tracers. We apply MAT to four sizes of desert dust aerosol and simulate, for the first time, global distributions of aerosol age in the atmosphere and at deposition. These dust size and age distributions at deposition, together with independent information on air mass acidity, allow us to test two simple yet plausible models for predicting the dissolution of mineral dust iron and aluminum during atmospheric transport. These models represent aerosol solubility as controlled (1) by a diffusive process leaching nutrients from the dust into equilibrium with the liquid water coating or (2) by a process that continually dissolves nutrients in proportion to the particle surface area. The surface-controlled model better captures the spatial pattern of observed solubility in the Atlantic. Neither model improves previous estimates of the solubility in the Pacific, nor do they significantly improve the global BEC simulation of dissolved iron or aluminum.

Natural selection for costly nutrient recycling in simulated microbial metacommunities.

PubMed

Boyle, Richard A; Williams, Hywel T P; Lenton, Timothy M

2012-11-07

Recycling of essential nutrients occurs at scales from microbial communities to global biogeochemical cycles, often in association with ecological interactions in which two or more species utilise each others' metabolic by-products. However, recycling loops may be unstable; sequences of reactions leading to net recycling may be parasitised by side-reactions causing nutrient loss, while some reactions in any closed recycling loop are likely to be costly to participants. Here we examine the stability of nutrient recycling loops in an individual-based ecosystem model based on microbial functional types that differ in their metabolism. A supplied nutrient is utilised by a "source" functional type, generating a secondary nutrient that is subsequently used by two other types-a "mutualist" that regenerates the initial nutrient at a growth rate cost, and a "parasite" that produces a refractory waste product but does not incur any additional cost. The three functional types are distributed across a metacommunity in which separate patches are linked by a stochastic diffusive migration process. Regions of high mutualist abundance feature high levels of nutrient recycling and increased local population density leading to greater export of individuals, allowing the source-mutualist recycling loop to spread across the system. Individual-level selection favouring parasites is balanced by patch-level selection for high productivity, indirectly favouring mutualists due to the synergistic productivity benefits of the recycling loop they support. This suggests that multi-level selection may promote nutrient cycling and thereby help to explain the apparent ubiquity and stability of nutrient recycling in nature.

Separating Autotrophic and Heterotrophic Respiration in Streams and the Importance for Carbon Cycling: a Preliminary Study

NASA Astrophysics Data System (ADS)

Bozeman, M.; Raymond, P.

2005-05-01

Autotrophic and heterotrophic organisms confer different effects on nutrient cycling, especially on carbon (C). In stream ecosystems, net ecosystem production determines the amount and form of C exported; however any transformation due to different respiratory (R) mechanisms are not separated. These mechanisms highly influence the form and lability of the C transported. To understand the current state of knowledge and estimate the importance of autotrophic versus heterotrophic R, we obtained a range of respiratory rates from the literature and modeled effects of different balances of rates on bulk dissolved inorganic and organic C chemistry. Preliminary results show that a wide range of estimates of autotrophic R exist and that these can effect bulk properties of exported C. While specific effects are highly dependent upon physical structure of the study watershed, we offer that separating R mechanisms provides further insight into ecosystem C cycling. We also propose a method to measure autotrophic and heterotrophic R at the ecosystem scale and obtain watershed-level estimates of the importance of these processes on C cycling.

Pilot-scale data provide enhanced estimates of the life cycle energy and emissions profile of algae biofuels produced via hydrothermal liquefaction.

PubMed

Liu, Xiaowei; Saydah, Benjamin; Eranki, Pragnya; Colosi, Lisa M; Greg Mitchell, B; Rhodes, James; Clarens, Andres F

2013-11-01

Life cycle assessment (LCA) has been used widely to estimate the environmental implications of deploying algae-to-energy systems even though no full-scale facilities have yet to be built. Here, data from a pilot-scale facility using hydrothermal liquefaction (HTL) is used to estimate the life cycle profiles at full scale. Three scenarios (lab-, pilot-, and full-scale) were defined to understand how development in the industry could impact its life cycle burdens. HTL-derived algae fuels were found to have lower greenhouse gas (GHG) emissions than petroleum fuels. Algae-derived gasoline had significantly lower GHG emissions than corn ethanol. Most algae-based fuels have an energy return on investment between 1 and 3, which is lower than petroleum biofuels. Sensitivity analyses reveal several areas in which improvements by algae bioenergy companies (e.g., biocrude yields, nutrient recycle) and by supporting industries (e.g., CO2 supply chains) could reduce the burdens of the industry. Copyright © 2013 Elsevier Ltd. All rights reserved.

Bacterioplankton carbon cycling along the Subtropical Frontal Zone off New Zealand

NASA Astrophysics Data System (ADS)

Baltar, Federico; Stuck, Esther; Morales, Sergio; Currie, Kim

2015-06-01

Marine heterotrophic bacterioplankton (Bacteria and Archaea) play a central role in ocean carbon cycling. As such, identifying the factors controlling these microbial populations is crucial to fully understanding carbon fluxes. We studied bacterioplankton activities along a transect crossing three water masses (i.e., Subtropical waters [STW], Sub-Antarctic waters [SAW] and neritic waters [NW]) with contrasting nutrient regimes across the Subtropical Frontal Zone. In contrast to bacterioplankton production and community respiration, bacterioplankton respiration increased in the offshore SAW, causing a seaward increase in the contribution of bacteria to community respiration (from 7% to 100%). Cell-specific bacterioplankton respiration also increased in SAW, but cell-specific production did not, suggesting that prokaryotic cells in SAW were investing more energy towards respiration than growth. This was reflected in a 5-fold decline in bacterioplankton growth efficiency (BGE) towards SAW. One way to explain this decrease in BGE could be due to the observed reduction in phytoplankton biomass (and presumably organic matter concentration) towards SAW. However, this would not explain why bacterioplankton respiration was highest in SAW, where phytoplankton biomass was lowest. Another factor affecting BGE could be the iron limitation characteristic of high-nutrient low-chlorophyll (HNLC) regions like SAW. Our field-study based evidences would agree with previous laboratory experiments in which iron stress provoked a decrease in BGE of marine bacterial isolates. Our results suggest that there is a strong gradient in bacterioplankton carbon cycling rates along the Subtropical Frontal Zone, mainly due to the HNLC conditions of SAW. We suggest that Fe-induced reduction of BGE in HNLC regions like SAW could be relevant in marine carbon cycling, inducing bacterioplankton to act as a link or a sink of organic carbon by impacting on the quantity of organic carbon they incorporate into biomass or respire as CO2.

BIOGEOCHEMICAL INDICATORS IN AQUATIC ECOSYSTEMS

EPA Science Inventory

Loadings of excess organic wastes and associated nutrients to aquatic systems has numerous deleterious consequences with respect to the ecosystem services provided by these important ecosystems including perturbation of organic matter and nutrient cycling rates, reduction in diss...

Long-Term Soil Experiments: A Key to Managing Earth's Rapidly Changing Critical Zones

NASA Astrophysics Data System (ADS)

Richter, D., Jr.

2014-12-01

In a few decades, managers of Earth's Critical Zones (biota, humans, land, and water) will be challenged to double food and fiber production and diminish adverse effects of management on the wider environment. To meet these challenges, an array of scientific approaches is being used to increase understanding of Critical Zone functioning and evolution, and one amongst these approaches needs to be long-term soil field studies to move us beyond black boxing the belowground Critical Zone, i.e., to further understanding of processes driving changes in the soil environment. Long-term soil experiments (LTSEs) provide direct observations of soil change and functioning across time scales of decades, data critical for biological, biogeochemical, and environmental assessments of sustainability; for predictions of soil fertility, productivity, and soil-environment interactions; and for developing models at a wide range of temporal and spatial scales. Unfortunately, LTSEs globally are not in a good state, and they take years to mature, are vulnerable to loss, and even today remain to be fully inventoried. Of the 250 LTSEs in a web-based network, results demonstrate that soils and belowground Critical Zones are highly dynamic and responsive to human management. The objective of this study is to review the contemporary state of LTSEs and consider how they contribute to three open questions: (1) can soils sustain a doubling of food production in the coming decades without further impinging on the wider environment, (2) how do soils interact with the global C cycle, and (3) how can soil management establish greater control over nutrient cycling. While LTSEs produce significant data and perspectives for all three questions, there is on-going need and opportunity for reviews of the long-term soil-research base, for establishment of an efficiently run network of LTSEs aimed at sustainability and improving management control over C and nutrient cycling, and for research teams that provide for generation to generation transfer of new and historic LTSEs.

The leaking soil nitrogen cycle and rising atmospheric N2O: Is there anything we can do to cap the well?

USDA-ARS?s Scientific Manuscript database

Nutrient management refers to the addition and management of synthetic or organic fertilizers to soils primarily for purposes of increasing the supply of nutrients and efficiency of crop nutrient uptake in order to improve yields while minimizing environmental impact. Nitrogen (N) is generally the m...

The impact of cow nutrient status during the second and third trimesters on age at puberty, antral follicle count, and fertility of daughters

USDA-ARS?s Scientific Manuscript database

Fluctuating feed resources to beef cows across the production cycle is a proven method for decreasing input costs; however, limiting nutrients during late gestation have been demonstrated to decrease ovarian follicle numbers in female offspring in some studies. We hypothesize that limiting nutrients...

Closed-Cycle Nutrient Supply For Hydroponics

NASA Technical Reports Server (NTRS)

Schwartzkopf, Steven H.

1991-01-01

Hydroponic system controls composition and feed rate of nutrient solution and recovers and recycles excess solution. Uses air pressure on bladders to transfer aqueous nutrient solution. Measures and adjusts composition of solution before it goes to hydroponic chamber. Eventually returns excess solution to one of tanks. Designed to operate in microgravity, also adaptable to hydroponic plant-growing systems on Earth.

Belowground Nutrient Dynamics Following Three Harvest Intensities on the Pearl River Floodplain, Mississippi

Treesearch

E.B. Schilling; B.G. Lockaby; Robert Rummer

1999-01-01

Abstract: The influence of clear and partial cut harvests on belowground nutrient cycling processes was examined on the Pearl River floodplain, Mississippi. Foci examined by this study included fine root biomass and detritus, fine root production, fine root nutrient contents, soil respiration rates, and microbial biomass C, N, and P during the first...

Nutrient restriction induces failure of reproductive function and molecular changes in hypothalamus-pituitary-gonadal axis in postpubertal gilts.

PubMed

Zhou, Dongsheng; Zhuo, Yong; Che, Lianqiang; Lin, Yan; Fang, Zhengfeng; Wu, De

2014-07-01

People on a diet to lose weight may be at risk of reproductive failure. To investigate the effects of nutrient restriction on reproductive function and the underlying mechanism, changes of reproductive traits, hormone secretions and gene expressions in hypothalamus-pituitary-gonadal axis were examined in postpubertal gilts at anestrus induced by nutrient restriction. Gilts having experienced two estrus cycles were fed a normal (CON, 2.86 kg/d) or nutrient restricted (NR, 1 kg/d) food regimens to expect anestrus. NR gilts experienced another three estrus cycles, but did not express estrus symptoms at the anticipated fourth estrus. Blood samples were collected at 5 days' interval for consecutive three times for measurement of hormone concentrations at the 23th day of the fourth estrus cycle. Individual progesterone concentrations of NR gilts from three consecutive blood samples were below 1.0 ng/mL versus 2.0 ng/mL in CON gilts, which was considered anestrus. NR gilts had impaired development of reproductive tract characterized by absence of large follicles (diameter ≥ 6 mm), decreased number of corepus lutea and atrophy of uterus and ovary tissues. Circulating concentrations of IGF-I, kisspeptin, estradiol, progesterone and leptin were significantly lower in NR gilts than that in CON gilts. Nutrient restriction down-regulated gene expressions of kiss-1, G-protein coupled protein 54, gonadotropin-releasing hormone, estrogen receptor α, progesterone receptor, leptin receptor, follicle-stimulating hormone and luteinizing hormone and insulin-like growth factor I in hypothalamus-pituitary-gonadal axis of gilts. Collectively, nutrient restriction resulted in impairment of reproductive function and changes of hormone secretions and gene expressions in hypothalamus-pituitary-gonadal axis, which shed light on the underlying mechanism by which nutrient restriction influenced reproductive function.

Quantifying Km-scale Hydrological Exchange Flows under Dynamic Flows and Their Influences on River Corridor Biogeochemistry

NASA Astrophysics Data System (ADS)

Chen, X.; Song, X.; Shuai, P.; Hammond, G. E.; Ren, H.; Zachara, J. M.

2017-12-01

Hydrologic exchange flows (HEFs) in rivers play vital roles in watershed ecological and biogeochemical functions due to their strong capacity to attenuate contaminants and process significant quantities of carbon and nutrients. While most of existing HEF studies focus on headwater systems with the assumption of steady-state flow, there is lack of understanding of large-scale HEFs in high-order regulated rivers that experience high-frequency stage fluctuations. The large variability of HEFs is a result of interactions between spatial heterogeneity in hydrogeologic properties and temporal variation in river discharge induced by natural or anthropogenic perturbations. Our 9-year spatially distributed dataset (water elevation, specific conductance, and temperature) combined with mechanistic hydrobiogeochemical simulations have revealed complex spatial and temporal dynamics in km-scale HEFs and their significant impacts on contaminant plume mobility and hyporheic biogeochemical processes along the Hanford Reach. Extended multidirectional flow behaviors of unconfined, river corridor groundwater were observed hundreds of meters inland from the river shore resulting from discharge-dependent HEFs. An appropriately sized modeling domain to capture the impact of regional groundwater flow as well as knowledge of subsurface structures controlling intra-aquifer hydrologic connectivity were essential to realistically model transient storage in this large-scale river corridor. This work showed that both river water and mobile groundwater contaminants could serve as effective tracers of HEFs, thus providing valuable information for evaluating and validating the HEF models. Multimodal residence time distributions with long tails were resulted from the mixture of long and short exchange pathways, which consequently impact the carbon and nutrient cycling within the river corridor. Improved understanding of HEFs using integrated observational and modeling approaches sheds light on developing fundamental understanding of the influences of HEFs on water quality, nutrient dynamics, and ecosystem health in dynamic river corridor systems.

Alternative bacteriophage life cycles: the carrier state of Campylobacter jejuni

PubMed Central

Siringan, Patcharin; Connerton, Phillippa L.; Cummings, Nicola J.; Connerton, Ian F.

2014-01-01

Members of the genus Campylobacter are frequently responsible for human enteric disease, often through consumption of contaminated poultry products. Bacteriophages are viruses that have the potential to control pathogenic bacteria, but understanding their complex life cycles is key to their successful exploitation. Treatment of Campylobacter jejuni biofilms with bacteriophages led to the discovery that phages had established a relationship with their hosts typical of the carrier state life cycle (CSLC), where bacteria and bacteriophages remain associated in equilibrium. Significant phenotypic changes include improved aerotolerance under nutrient-limited conditions that would confer an advantage to survive in extra-intestinal environments, but a lack in motility eliminated their ability to colonize chickens. Under these circumstances, phages can remain associated with a compatible host and continue to produce free virions to prospect for new hosts. Moreover, we demonstrate that CSLC host bacteria can act as expendable vehicles for the delivery of bacteriophages to new host bacteria within pre-colonized chickens. The CSLC represents an important phase in the ecology of Campylobacter bacteriophage. PMID:24671947

Alternative bacteriophage life cycles: the carrier state of Campylobacter jejuni.

PubMed

Siringan, Patcharin; Connerton, Phillippa L; Cummings, Nicola J; Connerton, Ian F

2014-03-26

Members of the genus Campylobacter are frequently responsible for human enteric disease, often through consumption of contaminated poultry products. Bacteriophages are viruses that have the potential to control pathogenic bacteria, but understanding their complex life cycles is key to their successful exploitation. Treatment of Campylobacter jejuni biofilms with bacteriophages led to the discovery that phages had established a relationship with their hosts typical of the carrier state life cycle (CSLC), where bacteria and bacteriophages remain associated in equilibrium. Significant phenotypic changes include improved aerotolerance under nutrient-limited conditions that would confer an advantage to survive in extra-intestinal environments, but a lack in motility eliminated their ability to colonize chickens. Under these circumstances, phages can remain associated with a compatible host and continue to produce free virions to prospect for new hosts. Moreover, we demonstrate that CSLC host bacteria can act as expendable vehicles for the delivery of bacteriophages to new host bacteria within pre-colonized chickens. The CSLC represents an important phase in the ecology of Campylobacter bacteriophage.

Nutrient load summaries for major lakes and estuaries of the Eastern United States, 2002

USGS Publications Warehouse

Moorman, Michelle C.; Hoos, Anne B.; Bricker, Suzanne B.; Moore, Richard B.; García, Ana María; Ator, Scott W.

2014-01-01

Nutrient enrichment of lakes and estuaries across the Nation is widespread. Nutrient enrichment can stimulate excessive plant and algal growth and cause a number of undesirable effects that impair aquatic life and recreational activities and can also result in economic effects. Understanding the amount of nutrients entering lakes and estuaries, the physical characteristics affecting the nutrient processing within these receiving waterbodies, and the natural and manmade sources of nutrients is fundamental to the development of effective nutrient reduction strategies. To improve this understanding, sources and stream transport of nutrients to 255 major lakes and 64 estuaries in the Eastern United States were estimated using Spatially Referenced Regression on Watershed attributes (SPARROW) nutrient models.

Climatic cycles recorded in the Middle Eocene hemipelagites from a Dinaric foreland basin of Istria (Croatia)

NASA Astrophysics Data System (ADS)

Lužar-Oberiter, Borna; Hochuli, Peter A.; Babić, Ljubomir; Glumac, Bosiljka; Tibljaš, Darko

2010-06-01

Middle Eocene hemipelagic marls from the Pazin-Trieste Basin, a foreland basin of the Croatian Dinarides, display repetitive alternations of two types of marls with different resistance to weathering. This study focuses on the chemical composition, stable isotopes, and palynomorph content of these marls in order to better understand the nature of their cyclic deposition and to identify possible paleoenvironmental drivers responsible for their formation. The less resistant marls (LRM) have consistently lower carbonate content, lower δ18O and δ13C values, and more abundant dinoflagellate cysts than the more resistant marls (MRM). We interpret these differences between the two marl types to be a result of climatic variations, likely related to Milankovitch oscillations. Periods with wetter climate, associated with increased continental runoff, detrital and nutrient influx produced the LRM. Higher nutrient supply sparked higher dinoflagellate productivity during these times, while reduced salinity and stratification of the water column may have hampered the productivity of calcareous nannoplankton and/or planktonic foraminifera. In contrast, the MRM formed during dryer periods which favoured higher carbonate accumulation rates. This study provides new information about the sedimentary record of short-scale climate variations reflected in wet-dry cycles during an overall warm, greenhouse Earth.

Tree-mycorrhizal associations detected remotely from canopy spectral properties.

PubMed

Fisher, Joshua B; Sweeney, Sean; Brzostek, Edward R; Evans, Tom P; Johnson, Daniel J; Myers, Jonathan A; Bourg, Norman A; Wolf, Amy T; Howe, Robert W; Phillips, Richard P

2016-07-01

A central challenge in global ecology is the identification of key functional processes in ecosystems that scale, but do not require, data for individual species across landscapes. Given that nearly all tree species form symbiotic relationships with one of two types of mycorrhizal fungi - arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi - and that AM- and ECM-dominated forests often have distinct nutrient economies, the detection and mapping of mycorrhizae over large areas could provide valuable insights about fundamental ecosystem processes such as nutrient cycling, species interactions, and overall forest productivity. We explored remotely sensed tree canopy spectral properties to detect underlying mycorrhizal association across a gradient of AM- and ECM-dominated forest plots. Statistical mining of reflectance and reflectance derivatives across moderate/high-resolution Landsat data revealed distinctly unique phenological signals that differentiated AM and ECM associations. This approach was trained and validated against measurements of tree species and mycorrhizal association across ~130 000 trees throughout the temperate United States. We were able to predict 77% of the variation in mycorrhizal association distribution within the forest plots (P < 0.001). The implications for this work move us toward mapping mycorrhizal association globally and advancing our understanding of biogeochemical cycling and other ecosystem processes. © 2016 John Wiley & Sons Ltd.

Model of an aquaponic system for minimised water, energy and nitrogen requirements.

PubMed

Reyes Lastiri, D; Slinkert, T; Cappon, H J; Baganz, D; Staaks, G; Keesman, K J

2016-01-01

Water and nutrient savings can be established by coupling water streams between interacting processes. Wastewater from production processes contains nutrients like nitrogen (N), which can and should be recycled in order to meet future regulatory discharge demands. Optimisation of interacting water systems is a complex task. An effective way of understanding, analysing and optimising such systems is by applying mathematical models. The present modelling work aims at supporting the design of a nearly emission-free aquaculture and hydroponic system (aquaponics), thus contributing to sustainable production and to food security for the 21st century. Based on the model, a system that couples 40 m(3) fish tanks and a hydroponic system of 1,000 m(2) can produce 5 tons of tilapia and 75 tons of tomato yearly. The system requires energy to condense and recover evaporated water, for lighting and heating, adding up to 1.3 GJ/m(2) every year. In the suggested configuration, the fish can provide about 26% of the N required in a plant cycle. A coupling strategy that sends water from the fish to the plants in amounts proportional to the fish feed input, reduces the standard deviation of the NO3(-) level in the fish cycle by 35%.

Enhanced terrestrial carbon uptake: global drivers and implications for the growth rate of atmospheric CO2.

NASA Astrophysics Data System (ADS)

Keenan, Trevor F.; Prentice, Colin; Canadell, Josep; Williams, Christopher; Han, Wang; Riley, William; Zhu, Qing; Koven, Charlie; Chambers, Jeff

2017-04-01

In this presentation we will focus on using decadal changes in the global carbon cycle to better understand how ecosystems respond to changes in CO2 concentration, temperature, and water and nutrient availability. Using global carbon budget estimates, ground, atmospheric and satellite observations, and multiple process-based global vegetation models, we examine the causes and consequences of the long-term changes in the terrestrial carbon sink. We show that over the past century the sink has been greatly enhanced, largely due to the effect of elevated CO2 on photosynthesis dominating over warming induced increases in respiration. We also examine the relative roles of greening, water and nutrients, along with individual events such as El Nino. We show that a slowdown in the rate of warming over land since the start of the 21st century likely led to a large increase in the sink, and that this increase was sufficient to lead to a pause in the growth rate of atmospheric CO2. We also show that the recent El Nino resulted in the highest growth rate of atmospheric CO2 ever recorded. Our results provide evidence of the relative roles of CO2 fertilization and warming induced respiration in the global carbon cycle, along with an examination of the impact of climate extremes.

You are what you eat: O-linked N-acetylglucosamine in disease, development and epigenetics.

PubMed

Olivier-Van Stichelen, Stéphanie; Hanover, John A

2015-07-01

The O-linked N-acetylglucosamine (O-GlcNAc) modification is both responsive to nutrient availability and capable of altering intracellular cellular signalling. We summarize data defining a role for O-GlcNAcylation in metabolic homeostasis and epigenetic regulation of development in the intrauterine environment. O-GlcNAc transferase (OGT) catalyzes nutrient-driven O-GlcNAc addition and is subject to random X-inactivation. OGT plays key roles in growth factor signalling, stem cell biology, epigenetics and possibly imprinting. The O-GlcNAcase, which removes O-GlcNAc, is subject to tight regulation by higher order chromatin structure. O-GlcNAc cycling plays an important role in the intrauterine environment wherein OGT expression is an important biomarker of placental stress. Regulation of O-GlcNAc cycling by X-inactivation, epigenetic regulation and nutrient-driven processes makes it an ideal candidate for a nutrient-dependent epigenetic regulator of human disease. In addition, O-GlcNAc cycling influences chromatin modifiers critical to the regulation and timing of normal development including the polycomb repression complex and the ten-eleven translocation proteins mediating DNA methyl cytosine demethylation. The pathway also impacts the hypothalamic-pituitary-adrenal axis critical to intrauterine programming influencing disease susceptibility in later life.

Microbial community assembly and metabolic function during mammalian corpse decomposition.

PubMed

Metcalf, Jessica L; Xu, Zhenjiang Zech; Weiss, Sophie; Lax, Simon; Van Treuren, Will; Hyde, Embriette R; Song, Se Jin; Amir, Amnon; Larsen, Peter; Sangwan, Naseer; Haarmann, Daniel; Humphrey, Greg C; Ackermann, Gail; Thompson, Luke R; Lauber, Christian; Bibat, Alexander; Nicholas, Catherine; Gebert, Matthew J; Petrosino, Joseph F; Reed, Sasha C; Gilbert, Jack A; Lynne, Aaron M; Bucheli, Sibyl R; Carter, David O; Knight, Rob

2016-01-08

Vertebrate corpse decomposition provides an important stage in nutrient cycling in most terrestrial habitats, yet microbially mediated processes are poorly understood. Here we combine deep microbial community characterization, community-level metabolic reconstruction, and soil biogeochemical assessment to understand the principles governing microbial community assembly during decomposition of mouse and human corpses on different soil substrates. We find a suite of bacterial and fungal groups that contribute to nitrogen cycling and a reproducible network of decomposers that emerge on predictable time scales. Our results show that this decomposer community is derived primarily from bulk soil, but key decomposers are ubiquitous in low abundance. Soil type was not a dominant factor driving community development, and the process of decomposition is sufficiently reproducible to offer new opportunities for forensic investigations. Copyright © 2016, American Association for the Advancement of Science.

Response of dissolved carbon and nitrogen concentrations to moderate nutrient additions in a tropical montane forest of south Ecuador

NASA Astrophysics Data System (ADS)

Velescu, Andre; Valarezo, Carlos; Wilcke, Wolfgang

2016-05-01

In the past two decades, the tropical montane rain forests in south Ecuador experienced increasing deposition of reactive nitrogen mainly originating from Amazonian forest fires, while Saharan dust inputs episodically increased deposition of base metals. Increasing air temperature and unevenly distributed rainfall have allowed for longer dry spells in a perhumid ecosystem. This might have favored mineralization of dissolved organic matter (DOM) by microorganisms and increased nutrient release from the organic layer. Environmental change is expected to impact the functioning of this ecosystem belonging to the biodiversity hotspots of the Earth. In 2007, we established a nutrient manipulation experiment (NUMEX) to understand the response of the ecosystem to moderately increased nutrient inputs. Since 2008, we have continuously applied 50 kg ha-1 a-1 of nitrogen (N), 10 kg ha-1 a-1 of phosphorus (P), 50 kg + 10 kg ha-1 a-1 of N and P and 10 kg ha-1 a-1 of calcium (Ca) in a randomized block design at 2000 m a.s.l. in a natural forest on the Amazonia-exposed slopes of the south Ecuadorian Andes. Nitrogen concentrations in throughfall increased following N+P additions, while separate N amendments only increased nitrate concentrations. Total organic carbon (TOC) and dissolved organic nitrogen (DON) concentrations showed high seasonal variations in litter leachate and decreased significantly in the P and N+P treatments, but not in the N treatment. Thus, P availability plays a key role in the mineralization of DOM. TOC/DON ratios were narrower in throughfall than in litter leachate but their temporal course did not respond to nutrient amendments. Our results revealed an initially fast, positive response of the C and N cycling to nutrient additions which declined with time. TOC and DON cycling only change if N and P supply are improved concurrently, while NO3-N leaching increases only if N is separately added. This indicates co-limitation of the microorganisms by N and P. The current increasing reactive N deposition will increase N export from the root zone, while it will only accelerate TOC and DON turnover if P availability is simultaneously increased. The Saharan dust-related Ca deposition has no impact on TOC and DON turnover.

Membrane Bioreactor With Pressure Cycle

NASA Technical Reports Server (NTRS)

Efthymiou, George S.; Shuler, Michael L.

1991-01-01

Improved class of multilayer membrane bioreactors uses convention forced by differences in pressure to overcome some of diffusional limitations of prior bioreactors. In reactor of new class, flow of nutrient solution reduces adverse gradients of concentration, keeps cells supplied with fresh nutrient, and sweeps away products faster than diffusion alone. As result, overall yield and rate of reaction increased. Pressures in sweeping gas and nutrient alternated to force nutrient liquid into and out of biocatalyst layer through hyrophilic membrane.

Multiple constraint modeling of nutrient cycling stoichiometry following forest clearing and pasture abandonment in the Eastern Amazon

NASA Astrophysics Data System (ADS)

Davidson, Eric; Nifong, Rachel

2017-04-01

While deforestation has declined since its peak, land-use change continues to modify Amazonian landscapes. The responses and feedbacks of biogeochemical cycles to these changes play an important role in determining possible future trajectories of ecosystem function and for land stewardship through effects on rates of secondary forest regrowth, soil emissions of greenhouse gases, inputs of nutrients to groundwater and streamwater, and nutrient management in agroecosystems. Here we present a new synthetic analyses of data from the NASA-supported LBA-ECO project and others datasets on nutrient cycling in cattle pastures, secondary forests, and mature forests at Paragominas, Pará, Brazil. We have developed a stoichiometric model relating C-N-P interactions during original forest clearing, extensive and intensive pasture management, and secondary forest regrowth, constrained by multiple observations of ecosystem stocks and fluxes in each land use. While P is conservatively cycled in all land uses, we demonstrate that pyrolyzation of N during pasture formation and during additional burns for pasture management depletes available-N pools, consistent with observations of lower rates of N leaching and trace gas emission and consistent with secondary forest growth responses to experimental N amendments. The soils store large stocks of N and P, and our parameterization of available forms of these nutrients for steady-state dynamics in the mature forest yield reasonable estimates of net N and P mineralization available for grasses and secondary forest species at rates consistent with observed biomass accumulation and productivity in these modified ecosystems. Because grasses and forests have much different demands for N relative to P, the land use has important biogeochemical impacts. The model demonstrates the need for periodic P inputs for sustainable pasture management and for a period of significant biological N fixation for early-to-mid-successional secondary forest regrowth. The model framework illustrates the relative magnitudes of changing stocks and flows of nutrients and attendant ecosystem functions through the phases of land use change experienced in eastern Amazonia.

Ecological role of reindeer summer browsing in the mountain birch (Betula pubescens ssp. czerepanovii) forests: effects on plant defense, litter decomposition, and soil nutrient cycling.

PubMed

Stark, Sari; Julkunen-Tiitto, Riitta; Kumpula, Jouko

2007-03-01

Mammalian herbivores commonly alter the concentrations of secondary compounds in plants and, by this mechanism, have indirect effects on litter decomposition and soil carbon and nutrient cycling. In northernmost Fennoscandia, the subarctic mountain birch (Betula pubescens ssp. czerepanovii) forests are important pasture for the semidomestic reindeer (Rangifer tarandus). In the summer ranges, mountain birches are intensively browsed, whereas in the winter ranges, reindeer feed on ground lichens, and the mountain birches remain intact. We analyzed the effect of summer browsing on the concentrations of secondary substances, litter decomposition, and soil nutrient pools in areas that had been separated as summer or winter ranges for at least 20 years, and we predicted that summer browsing may reduce levels of secondary compounds in the mountain birch and, by this mechanism, have an indirect effect on the decomposition of mountain birch leaf litter and soil nutrient cycling. The effect of browsing on the concentration of secondary substances in the mountain birch leaves varied between different years and management districts, but in some cases, the concentration of condensed tannins was lower in the summer than in the winter ranges. In a reciprocal litter decomposition trial, both litter origin and emplacement significantly affected the litter decomposition rate. Decomposition rates were faster for the litter originating from and placed into the summer range. Soil inorganic nitrogen (N) concentrations were higher in the summer than in the winter ranges, which indicates that reindeer summer browsing may enhance the soil nutrient cycling. There was a tight inverse relationship between soil N and foliar tannin concentrations in the winter range but not in the summer range. This suggests that in these strongly nutrient-limited ecosystems, soil N availability regulates the patterns of resource allocation to condensed tannins in the absence but not in the presence of browsing.

Bioenergetics in ecosystems

USGS Publications Warehouse

Madenjian, Charles P.; Farrell, Anthony P.

2011-01-01

A bioenergetics model for a fish can be defined as a quantitative description of the fish’s energy budget. Bioenergetics modeling can be applied to a fish population in a lake, river, or ocean to estimate the annual consumption of food by the fish population; such applications have proved to be useful in managing fisheries. In addition, bioenergetics models have been used to better understand fish growth and consumption in ecosystems, to determine the importance of the role of fish in cycling nutrients within ecosystems, and to identify the important factors regulating contaminant accumulation in fish from lakes, rivers, and oceans.

Forest biogeochemistry in response to drought

Treesearch

William H. Schlesinger; Michael C. Dietze; Robert B. Jackson; Richard P. Phillips; Charles C. Rhoades; Lindsey E. Rustad; James M. Vose

2015-01-01

Trees alter their use and allocation of nutrients in response to drought, and changes in soil nutrient cycling and trace gas flux (N2O and CH4) are observed when experimental drought is imposed on forests. In extreme droughts, trees are increasingly susceptible to attack by pests and pathogens, which can lead to major changes in nutrient flux to the soil....

Amounts of calcium and magnesium cycled and its release kinetics in a long-term no-till integrated crop-livestock system with varying grazing intensities in subtropical region

USDA-ARS?s Scientific Manuscript database

Under an integrated crop-livestock production system, plant and animal residues become an important nutrient stock. Grazing management could affect both plant and animal residue amount and quality, thereby influencing nutrient dynamics through modifications in nutrient release rates. The objective o...

Tide- and rainfall-induced variations of physical and chemical parameters in a mangrove-depleted estuary of East Hainan (South China Sea).

PubMed

Krumme, Uwe; Herbeck, Lucia S; Wang, Tianci

2012-12-01

The estuarine dynamics favoring the coexistence of mangroves, seagrass and corals at small river mouths are often poorly understood. We characterize the tidal, day/night and rainfall-induced short-term dynamics in salinity, pH, dissolved oxygen (DO), chlorophyll a (chl a), total suspended matter (TSM), water transparency, surface currents and dissolved nutrients (NO(x)(-), NH(4)(+), PO(4)(3)(-), Si(OH)(4)) of the Wenchang/Wenjiao Estuary (East Hainan, tropical China). Samples were taken at three fixed sites along the estuary during 24 h spring tide cycles in different seasons. Salinity, DO, water transparency and pH generally increased seawards while nutrients decreased. All parameters varied with the tidal cycle, partially in interaction with the diel cycle. Nutrients, chl a and TSM usually fluctuated inversely with water level. Stratification was strong. Inflowing bottom water was of higher salinity, DO and pH and lower temperature and nutrient concentrations than the surface water. Tidal mixing provided regular ventilation of the estuary and limited eutrophication effects of nutrients from aquaculture, agriculture and urban effluents. Under dry weather conditions, the brackish-water lagoon functioned as a sink of nutrients due to efficient uptake by phytoplankton. Presently, the runoff from common intense rains in the watershed affects the estuary with little time delay due to terrestrial deforestation, channelization and loss of mangrove area. The frequency, strength and duration of intermittent estuarization of the back-reef areas have likely increased in the past and deteriorate present seagrass and coral health. Copyright © 2012 Elsevier Ltd. All rights reserved.

On the Complexity of Nutrient Transport in a Large Watershed in Ohio

NASA Astrophysics Data System (ADS)

Schwartz, F. W.; Allen, G.

2009-12-01

This paper examines key features of the hydrobiologic setting in controlling the cycling of nutrients through the major streams and rivers of a large agriculturally dominated watershed in central Ohio. The particular focus is on the roles of extreme rainfall events in generating nutrients, and role of reservoirs in attenuating nutrient concentrations. The study also highlights major gaps in process knowledge even in the face in the face of extensive regulatory and other monitoring. Although it has been recognized that reservoirs can significantly affect surface-water flows in watersheds, there is a growing recognition of the need for expanded and complementary studies to understand their role in nutrient transport. The study area is located in central Ohio and includes the entire Upper Scioto and the northern portion of the Lower Scioto River basins, an area encompassing approximately 9984 km2. Five of the sub-watersheds contain major surface-water storage reservoirs. Two watersheds are without reservoirs. There is intensive agriculture within the study area with corn and soybeans as the dominant crops. Tile drainage of fields provides an efficient and rapid connection of agricultural lands to surface waters, facilitating the loading of fertilizers and agrochemicals to surface streams. Storm flows in spring months that coincide with fertilizer applications often provide nitrate concentrations in excess of 10 mg/L as N. In spite of years of routine sampling for regulatory purposes, little is known about nutrient loading patterns during the few, brief, extreme events each year. Interpretations of a high resolution temporal chemical record of sampling on the Scioto River is frustrated by the complexity of loading and mixing as tributaries from sub-watersheds join the main stem of the Scioto River and nutrient utilization within the large reservoirs. Even with literally thousands of individual chemical measurements, extensive stream and precipitation data, the details of processes affecting nutrient transport remain uncertain.

C-N-P interactions control climate driven changes in regional patterns of C storage on the North Slope of Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jiang, Yueyang; Rocha, Adrian; Rastetter, Edward

2016-01-01

As climate warms, changes in the carbon (C) balance of arctic tundra will play an important role in the global C balance. The C balance of tundra is tightly coupled to the nitrogen (N) and phosphorus (P) cycles because soil organic matter is the principal source of plant-available nutrients and determines the spatial variation of vegetation biomass across the North Slope of Alaska. Warming will accelerate these nutrient cycles, which should stimulate plant growth.

Convergent responses of nitrogen and phosphorus resorption to nitrogen inputs in a semiarid grassland

USGS Publications Warehouse

Lü, Xiao-Tao; Reed, Sasha; Yu, Qiang; He, Nian-Peng; Wang, Zheng-Wen; Han, Xing-Guo

2013-01-01

Human activities have significantly altered nitrogen (N) availability in most terrestrial ecosystems, with consequences for community composition and ecosystem functioning. Although studies of how changes in N availability affect biodiversity and community composition are relatively common, much less remains known about the effects of N inputs on the coupled biogeochemical cycling of N and phosphorus (P), and still fewer data exist regarding how increased N inputs affect the internal cycling of these two elements in plants. Nutrient resorption is an important driver of plant nutrient economies and of the quality of litter plants produce. Accordingly, resorption patterns have marked ecological implications for plant population and community fitness, as well as for ecosystem nutrient cycling. In a semiarid grassland in northern China, we studied the effects of a wide range of N inputs on foliar nutrient resorption of two dominant grasses, Leymus chinensis and Stipa grandis. After 4 years of treatments, N and P availability in soil and N and P concentrations in green and senesced grass leaves increased with increasing rates of N addition. Foliar N and P resorption significantly decreased along the N addition gradient, implying a resorption-mediated, positive plant–soil feedback induced by N inputs. Furthermore, N : P resorption ratios were negatively correlated with the rates of N addition, indicating the sensitivity of plant N and P stoichiometry to N inputs. Taken together, the results demonstrate that N additions accelerate ecosystem uptake and turnover of both N and P in the temperate steppe and that N and P cycles are coupled in dynamic ways. The convergence of N and P resorption in response to N inputs emphasizes the importance of nutrient resorption as a pathway by which plants and ecosystems adjust in the face of increasing N availability.

Water quality in simulated eutrophic shallow lakes in the presence of periphyton under different flow conditions.

PubMed

Chen, Shu; Yang, Guolu; Lu, Jing; Wang, Lei

2018-02-01

Although the effects of periphyton on water quality and its relationship with flow conditions have been studied by researchers, our understanding about their combined action in eutrophic shallow lakes is poor. In this research, four aquatic model ecosystems with different water circulation rates and hydraulic conditions were constructed to investigate the effect of periphyton and flow condition on water quality. The concentrations of NH 4 + , TP, and chlorophyll-a and flow conditions were determined. The results show that, as a result of the rising nutrient level at the early stage and the decline in the lower limit, the presence of periphyton can make the ecosystem adaptable to a wider range of nutrients concentration. In terms of the flow condition, the circulation rate and hydraulic condition are influential factors for aquatic ecosystem. Higher circulation rate in the ecosystem, on one hand, facilitates the metabolism by accelerating nutrient cycling which is beneficial to water quality; on the other hand, high circulation rate leads to the nutrient lower limit rising which is harmful to water quality improvement. At low velocities, slight differences in hydraulic conditions, vertical velocity gradient and turbulence intensity gradient could affect the quantity of phytoplankton. Our study suggests that, considering environmental effect of periphyton, flow conditions and their combined action is essential for water quality improvement and ecological restoration in eutrophic shallow lakes.

Diel plant water use and competitive soil cation exchange interact to enhance NH 4 + and K + availability in the rhizosphere

DOE PAGES

Espeleta, Javier F.; Cardon, Zoe G.; Mayer, K. Ulrich; ...

2016-11-12

Hydro-biogeochemical processes in the rhizosphere regulate nutrient and water availability, and thus ecosystem productivity. We hypothesized that two such processes often neglected in rhizosphere models — diel plant water use and competitive cation exchange — could interact to enhance availability of K + and NH 4 +, both high-demand nutrients. A rhizosphere model with competitive cation exchange was used to investigate how diel plant water use (i.e., daytime transpiration coupled with no nighttime water use, with nighttime root water release, and with nighttime transpiration) affects competitive ion interactions and availability of K + and NH 4 +. Competitive cation exchangemore » enabled lowdemand cations that accumulate against roots (Ca 2+, Mg 2+, Na +) to desorb NH 4 + and K + from soil, generating non-monotonic dissolved concentration profiles (i.e. ‘hotspots’ 0.1–1 cm from the root). Cation accumulation and competitive desorption increased with net root water uptake. Daytime transpiration rate controlled diel variation in NH 4 + and K + aqueous mass, nighttime water use controlled spatial locations of ‘hotspots’, and day-to-night differences in water use controlled diel differences in ‘hotspot’ concentrations. Finally, diel plant water use and competitive cation exchange enhanced NH 4 + and K + availability and influenced rhizosphere concentration dynamics. Demonstrated responses have implications for understanding rhizosphere nutrient cycling and plant nutrient uptake.« less

Environmental Impact Assessment of Shrimp Culture Practice in Southwest Coastal Region of Bangladesh

NASA Astrophysics Data System (ADS)

Islam, M. M.; Rouf, M. A.; Hambrey, J.

2008-12-01

The rapid unplanned expansion of coastal aquaculture in Bangladesh poses risks in degrading environment. The unsustainable aquaculture practices are suspected to impart significant nutrient load to the ecosystem. Nevertheless, shrimp production is very less and susceptible to sever mortality. For this, the study aimed to understand the management practices and nutrient flux from some represented shrimp ponds in southwest coastal region of Bangladesh. A comprehensive study from 2002 to 2004 was done in an aquatic system comprising a river (Semi diurnal tidal system), a canal and 10 shrimp ponds along with wider area survey to verify the issues under a DFID-funded research project involving Nautilus Consultants Ltd. (UK). In the study area (Dumuria under the district Khulna) shrimp culture practices were mostly improved extensive. Shrimp were being produced without proper pond preparation, fry nursing, stocking or feed management due to lack of technical somehow and the risks involved with higher levels of investment. Consequently production rates were very low, averaging only 191 Kg/ha. Very high mortality of shrimp was reported in some of the farms using shallow ponds immediately after heavy rainfall. This may due to the sudden fluctuation of water pH and/or water temperature and salinity. The water quality in shrimp ponds during grow out period was in acceptable range except lower trend of DO and ammonia nitrogen. Year round water quality observations indicated that there were no major differences among the river, canal and pond water that might be due to the high water flushing rate (468%). The nutrient dynamics estimation indicates that 48.7 kg/ha/cycle of nitrogen and 28.96 kg/ha/cycle of phosphorus were added to the pond as an input mostly from fertilizer and feed. Among the inputs, only 33.4% of nitrogen and 6% of phosphorus were removed as harvested form. A large portion, 39.1% N and 92% P were remained in the sediments and unaccounted for. Average intake of nutrients through supply water was slightly higher than nutrient discharged through water outlet, which indicates a net retention of nutrients in the pond ecosystems. A large portion of this sediment nutrient eventually finds its routes into the wider aquatic system every year during pond preparation. Though the aquatic environment is able to accommodate the load from the present level of aquaculture practice, the assimilative power of aquatic environment is in danger of being degraded with the unplanned intensification of shrimp culture areas. In planning aquaculture and future development all the issues and impacts must be considered.

Forest restoration treatments have subtle long-term effects on soil C and N cycling in mixed conifer forests.

PubMed

Ganzlin, Peter W; Gundale, Michael J; Becknell, Rachel E; Cleveland, Cory C

2016-07-01

Decades of fire suppression following extensive timber harvesting have left much of the forest in the intermountain western United States exceedingly dense, and forest restoration techniques (i.e., thinning and prescribed fire) are increasingly being used in an attempt to mitigate the effects of severe wildfire, to enhance tree growth and regeneration, and to stimulate soil nutrient cycling. While many of the short-term effects of forest restoration have been established, the long-term effects on soil biogeochemical and ecosystem processes are largely unknown. We assessed the effects of commonly used forest restoration treatments (thinning, burning, and thinning + burning) on nutrient cycling and other ecosystem processes 11 yr after restoration treatments were implemented in a ponderosa pine (Pinus ponderosa var. scopulorum)/Douglas fir (Pseudotsuga menziesii var. glauca) forest at the Lubrecht Fire and Fire Surrogates Study (FFS) site in western Montana, USA. Despite short-term (<3 yr) increases in soil inorganic nitrogen (N) pools and N cycling rates following prescribed fire, long-term soil N pools and N mineralization rates showed only subtle differences from untreated control plots. Similarly, despite a persistent positive correlation between fuels consumed in prescribed burns and several metrics of N cycling, variability in inorganic N pools decreased significantly since treatments were implemented, indicating a decline in N spatial heterogeneity through time. However, rates of net nitrification remain significantly higher in a thin + burn treatment relative to other treatments. Short-term declines in forest floor carbon (C) pools have persisted in the thin + burn treatment, but there were no significant long-term differences among treatments in extractable soil phosphorus (P). Finally, despite some short-term differences, long-term foliar nutrient concentrations, litter decomposition rates, and rates of free-living N fixation in the experimental plots were not different from control plots, suggesting nutrient cycles and ecosystem processes in temperate coniferous forests are resilient to disturbance following long periods of fire suppression. Overall, this study provides forest managers and policymakers valuable information showing that the effects of these commonly used restoration prescriptions on soil nutrient cycling are ephemeral and that use of repeated treatments (i.e., frequent fire) will be necessary to ensure continued restoration success. © 2016 by the Ecological Society of America.

Surface Nutrient Utilisation and Productivity During Glacial-Interglacial Periods from the Equatorial Indian Ocean

NASA Astrophysics Data System (ADS)

R, C. K.; Bhushan, R.; Agnihotri, R.; Sawlani, R.; Jull, A. J. T.

2016-12-01

Seawaters and underlying sediments off Sri Lanka provide a unique marine realm affected by both branches of Northern Indian Ocean i.e. Arabian Sea (AS) and Bay of Bengal (BOB). AS and BOB are known for their distinct response to southwest monsoon. AS experiencing mainly winds and upwelling while BOB receives precipitation driven surface runoff from the Indian sub-continent. Multiple proxies were measured on a radiocarbon dated sediment core raised off Sri Lanka; their down core variations were used to understand oceanic history (nutrient utilisation, surface productivity, nature of organic matter) spanning last glacial-interglacial cycle ( 26 to 2.5 ka BP). Variations in CaCO3, biogenic silica (BSi) and δ15N from 26 ka to 12.5 ka BP indicate the region was experiencing high surface productivity with probably reduced surface nutrient utilisation efficiency. Sedimentary δ15N depth profile is decoupled from down core variations of major productivity indices (e.g. CaCO3, OC), hinting plausibly partial utilization of nutrients in the mixed layer (photic zone). δ13C of OC and C/N (wt. ratio) clearly reveal the terrestrial origin of organic matter at 15 ka BP, a period known for witnessing onset of deglaciation in northern hemisphere. δ13C minimum at 9 ka BP indicates intense monsoonal activity during this time coinciding well with solar insolation (June) maximum of the northern hemisphere. With the onset of Holocene ( 11 ka BP), δ15N variations appear to correlate with BSi and Ba/Ti indicating enhanced utilization of available nutrients at surface. Suggesting surface productivity over the region was probably micro-nutrient limited. The increased inventory of terrestrial runoff in Holocene probably demonstrates enhanced carbon sequestration capability of the region.

A trait-based framework for understanding how and why litter decay and resource stoichiometry promote biogeochemical syndromes in arbuscular- and ectomycorrhizal-dominated forests

NASA Astrophysics Data System (ADS)

Phillips, R.; Brzostek, E. R.; Fisher, J. B.; Sulman, B. N.; Midgley, M.; Craig, M.; Keller, A. B.

2016-12-01

While it has long been known that ecosystems dominated by arbuscular mycorrhizal (AM) plants (e.g., grasslands, tropical forests) cycle carbon (C) and nutrients differently than those dominated by ectomycorrhizal (ECM) plants (e.g., boreal and subarctic forests), demonstrations of these patterns in ecosystems where both mycorrhizal types co-occur are rare. We tested the hypothesis that variation between AM and ECM nutrient use traits (e.g., litter quality) promote distinct microbial traits that track biogeochemical syndromes in temperate forests. We then explored whether such belowground dynamics influence ecosystem responses to elevated CO2. To do this, we calculated the C to N ratios of litter, soil microbes and soil organic matter in AM- and ECM-dominated forests throughout the temperate region. We then used these data to parameterize a coupled plant uptake-microbial decomposition model, in order to determine how belowground interactions feedback to affect ecosystem C and N cycling in forests exposed to elevated CO2. We found support for our hypothesis: AM litters decomposed 50% faster than ECM litters (p < 0.05), and litter decay rates were negatively correlated with the C:N of soils (including the microbial biomass and mineral soil; p < 0.05 for both) and positively correlated with net nitrification rates (p < 0.01). However, faster nitrogen (N) cycling in AM plots was also associated with a greater amount of physcially protected N in soil, suggesting that nutrient stabilizing mechanisms may constrain NPP in response to elevated CO2. Our model results supported this prediction. We found that while the C cost of acquiring of N is cheaper for AM trees than ECM trees, this cost difference is reduced under rising atmospheric CO2 owing to the enhanced protection of soil N in AM soils. Taken together, our results demonstrate that variation in AM- and ECM-associated plant and microbial traits promote predictable biogeochemical syndromes in temperate forests that can impact decomposition and NPP. Given that AM species are predicted to increase in abundance across much of the temperate region, our modeling results suggest that more N may get locked up in soils - a process that would induce progressive nutrient limitation of NPP and reduce the strength of the C sink in these forests.

Emergence of nutrient limitation in tropical dry forests: hypotheses from simulation models

NASA Astrophysics Data System (ADS)

Medvigy, D.; Waring, B. G.; Xu, X.; Trierweiler, A.; Werden, L. K.; Wang, G.; Zhu, Q.; Powers, J. S.

2017-12-01

It is unclear to what extent tropical dry forest productivity may be limited by nutrients. Direct assessment of nutrient limitation through fertilization experiments has been rare, and paradigms pertaining to other ecosystems may not extend to tropical dry forests. For example, because dry tropical forests have a lower water supply than moist tropical forests, dry forests can have lower decomposition rates, higher soil carbon and nitrogen concentrations, and a more open nitrogen cycle than moist forests. We used a mechanistic, numerical model to generate hypotheses about nutrient limitation in tropical dry forests. The model dynamically couples ED2 (vegetation dynamics), MEND (biogeochemistry), and N-COM (plant-microbe competition for nutrients). Here, the MEND-component of the model has been extended to include nitrogen (N) and phosphorus (P) cycles. We focus on simulation of sixteen 25m x 25m plots in Costa Rica where a fertilization experiment has been underway since 2015. Baseline simulations are characterized by both nitrogen and phosphorus limitation of vegetation. Fertilization with N and P increased vegetation biomass, with N fertilization having a somewhat stronger effect. Nutrient limitation was also sensitive to climate and was more pronounced during drought periods. Overflow respiration was identified as a key process that mitigated nutrient limitation. These results suggest that, despite often having richer soils than tropical moist forests, tropical dry forests can also become nutrient-limited. If the climate becomes drier in the next century, as is expected for Central America, drier soils may decrease microbial activity and exacerbate nutrient limitation. The importance of overflow respiration underscores the need for appropriate treatment of microbial dynamics in ecosystem models. Ongoing and new nutrient fertilization experiments will present opportunities for testing whether, and how, nutrient limitation may indeed be emerging in tropical dry forests.

Protein O-GlcNAcylation: emerging mechanisms and functions

PubMed Central

Yang, Xiaoyong; Qian, Kevin

2017-01-01

O-GlcNAcylation—the attachment of O-linked N-acetylglucosamine (O-GlcNAc) moieties to cytoplasmic, nuclear and mitochondrial proteins—is a post-translational modification that regulates fundamental cellular processes in metazoans. A single pair of enzymes—O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA)—controls the dynamic cycling of this post-translational modification in a nutrient- and stress-responsive manner. Recent years have seen remarkable advances in our understanding of O-GlcNAcylation at levels ranging from structural and molecular biology to cell signalling and gene regulation to physiology and disease. Emerging from these recent developments are new mechanisms and functions of O-GlcNAcylation that enable us to begin constructing a unified conceptual framework through which to understand the significance of this modification in cellular and organismal physiology. PMID:28488703

MODELING SEDIMENT-NUTRIENT FLUX AND SEDIMENT OXYGEN DEMAND

EPA Science Inventory

Depositional flux of particulate organic matter in bottom sediments affects nutrients cycling at the sediment-water interface and consumes oxygen from the overlying water in streams, lakes, and estuaries. This project deals with analytical modeling of nitrogen and carbon producti...

Midwest Cover Crops Field Guide

USDA-ARS?s Scientific Manuscript database

Producers who want to prevent soil erosion, improve nutrient cycling, sustain their soils, and protect/maintain the environment have been returning to a very old practice: planting cover crops. Cover crops are effective tools for reducing soil erosion and increasing nutrient recycling on farmlands, ...

Ecoenzymatic Stoichiometry of Microbial Organic Nutrient Acquisition in Soil and Sediment

EPA Science Inventory

Terrestrial soils and freshwater sediments contain reserves of organic carbon estimated at 1500 Pg and 0.2 Pg, respectively. Mineralization of this organic matter by heterotrophic microorganisms drives global carbon and nutrient cycles, controlling plant production and atmospher...

Soil Biogeochemistry Case Study: Cold Springs, Nevada

NASA Astrophysics Data System (ADS)

Morgan, T. A.; Verburg, P.

2016-12-01

The University of Nevada, Reno (UNR) Soil Biogeochemistry class, mentored by Dr. Robert Blank, United States Department of Agriculture/ Agricultural Research Service/ Great Basin Rangelands Research Unit (USDA/ARS/GBRRU) soil scientist, examined lithospheric biogeochemical cycles in a sagebrush ecosystem in Cold Springs, Nevada. The Cold Springs, Nevada area was selected to examine soil nutrient cycling under four landscape conditions: playa (no vegetation), invasive species mix of annual grasses and forbs, rabbitbrush (Ericameria nauseosa) encroached area, and sagebrush (Artemisia tridentata) dominant area. Five soil pits were excavated to describe pedons under each of the four landscape conditions. Soil samples were collected every 20 cm throughout a one meter profile, and were brought to the USDA/ARS/GBRRU laboratory for chemical analysis and characterization of physical and nutrient properties. In playa soils, solution-phase Na+ and SO4-2 had the highest concentrations on the top 20 cm. The invasive species soils showed a reduced molar NH4+ in mineral N throughout the profile. These soils also demonstrated a strong correlation between Fe and organic C. In the Rabbitbrush soils, extracted diethylenetriaminepentaacetic acid (DTPA) Fe appears to be cycled by depth across four of the five sites. However, the remaining rabbitbrush site which had the highest concentration of DTPA Fe, did not decline with depth. This indicated a nutrient specific lack of biogeochemical cycling. The rabbitbrush site also had almost double the organic C of the other four sites. Solution-phase K and Bicarb P expressed the highest concentrations in the 40-60 cm depth range. In three of the five sagebrush soils, the DTPA Mn concentration was highest at the surface and declined with depth. The remaining two sagebrush sites displayed the opposite trend. This case study revealed considerable variation in nutrient concentrations and biogeochemical cycling between soils and vegetation type.

Distinctive effects of allochthonous and autochthonous organic matter on CDOM spectra in a tropical lake

NASA Astrophysics Data System (ADS)

Pena Mello Brandão, Luciana; Silva Brighenti, Ludmila; Staehr, Peter Anton; Asmala, Eero; Massicotte, Philippe; Tonetta, Denise; Antônio Rodrigues Barbosa, Francisco; Pujoni, Diego; Fernandes Bezerra-Neto, José

2018-05-01

Despite the increasing understanding about differences in carbon cycling between temperate and tropical freshwater systems, our knowledge on the importance of organic matter (OM) pools on light absorption properties in tropical lakes is very scarce. We performed a factorial mesocosm experiment in a tropical lake (Minas Gerais, Brazil) to evaluate the effects of increased concentrations of allochthonous and autochthonous OM, and differences in light availability on the light absorption characteristics of chromophoric dissolved organic matter (CDOM). Autochthonous OM deriving from phytoplankton ( ˜ Chl a) was stimulated by addition of nutrients, while OM from degradation of terrestrial leaves increased allochthonous OM, and neutral shading was used to manipulate light availability. Effects of the additions and shading on DOC, Chl a, nutrients, total suspended solid concentrations (TSM) and spectral CDOM absorption were monitored every 3 days. CDOM quality was characterized by spectral indices (S250-450, S275-295, S350-450, SR and SUVA254). Effects of carbon sources and shading on the spectral CDOM absorption was investigated through principal component (PCA) and redundancy (RDA) analyses. The two different OM sources affected CDOM quality very differently and shading had minor effects on OM levels, but significant effects on OM quality, especially in combination with nutrient additions. Spectral indices (S250-450 and SR) were mostly affected by allochthonous OM addition. The PCA showed that enrichment by allochthonous carbon had a strong effect on the CDOM spectra in the range between 300 and 400 nm, while the increase in autochthonous carbon increased absorption at wavelengths below 350 nm. Our study shows that small inputs of allochthonous OM can have large effects on the spectral light absorption compared to large production of autochthonous OM, with important implications for carbon cycling in tropical lakes.

Composition of methane-oxidizing bacterial communities as a function of nutrient loading in the Florida everglades.

PubMed

Chauhan, Ashvini; Pathak, Ashish; Ogram, Andrew

2012-10-01

Agricultural runoff of phosphorus (P) in the northern Florida Everglades has resulted in several ecosystem level changes, including shifts in the microbial ecology of carbon cycling, with significantly higher methane being produced in the nutrient-enriched soils. Little is, however, known of the structure and activities of methane-oxidizing bacteria (MOB) in these environments. To address this, 0 to 10 cm plant-associated soil cores were collected from nutrient-impacted (F1), transition (F4), and unimpacted (U3) areas, sectioned in 2-cm increments, and methane oxidation rates were measured. F1 soils consumed approximately two-fold higher methane than U3 soils; additionally, most probable numbers of methanotrophs were 4-log higher in F1 than U3 soils. Metabolically active MOB containing pmoA sequences were characterized by stable-isotope probing using 10 % (v/v) (13)CH(4). pmoA sequences, encoding the alpha subunit of methane monooxygenase and related to type I methanotrophs, were identified from both impacted and unimpacted soils. Additionally, impacted soils also harbored type II methanotrophs, which have been shown to exhibit preferences for high methane concentrations. Additionally, across all soils, novel pmoA-type sequences were also detected, indicating presence of MOB specific to the Everglades. Multivariate statistical analyses confirmed that eutrophic soils consisted of metabolically distinct MOB community that is likely driven by nutrient enrichment. This study enhances our understanding on the biological fate of methane being produced in productive wetland soils of the Florida Everglades and how nutrient-enrichment affects the composition of methanotroph bacterial communities.

Trends in Taxonomic and Functional Composition of Soil Microbiome Along a Precipitation Gradient in Israel.

PubMed

Tripathi, Binu M; Moroenyane, Itumeleng; Sherman, Chen; Lee, Yoo Kyung; Adams, Jonathan M; Steinberger, Yosef

2017-07-01

The soil microbiome is important for the functioning of terrestrial ecosystems. However, the impacts of climate on taxonomic and functional diversity of soil microbiome are not well understood. A precipitation gradient along regional scale transects may offer a model setting for understanding the effect of climate on the composition and function of the soil microbiome. Here, we compared taxonomic and functional attributes of soil microorganisms in arid, semiarid, Mediterranean, and humid Mediterranean climatic conditions of Israel using shotgun metagenomic sequencing. We hypothesized that there would be a distinct taxonomic and functional soil community for each precipitation zone, with arid environments having lower taxonomic and functional diversity, greater relative abundance of stress response and sporulation-related genes, and lower relative abundance of genes related to nutrient cycling and degradation of complex organic compounds. As hypothesized, our results showed a distinct taxonomic and functional community in each precipitation zone, revealing differences in soil taxonomic and functional selection in the different climates. Although the taxonomic diversity remained similar across all sites, the functional diversity was-as hypothesized-lower in the arid environments, suggesting that functionality is more constrained in "extreme" environments. Also, with increasing aridity, we found a significant increase in genes related to dormancy/sporulation and a decrease in those related to nutrient cycling (genes related to nitrogen, potassium, and sulfur metabolism), respectively. However, relative abundance of genes related to stress response were lower in arid soils. Overall, these results indicate that climatic conditions play an important role in shaping taxonomic and functional attributes of soil microbiome. These findings have important implications for understanding the impacts of climate change (e.g., precipitation change) on structure and function of the soil microbiome.

Long-term implications of forest harvesting on nutrient cycling in central hardwood forests

Treesearch

J.A. Lynch; E.S. Corbett

1991-01-01

Fourteen years of streamflow and water quality data from the Leading Ridge Experimental Watersheds in central Pennsylvania were analyzed to determine the long-term impacts of a commercial forest harvest on stream water chemistry and nutrient loss.

Greenhouse gas emissions in an agroforestry system in the southeastern USA

USDA-ARS?s Scientific Manuscript database

Agroforestry systems may provide diverse ecosystem services and economic benefits that conventional agriculture cannot, e.g. potentially mitigating greenhouse gas emissions by enhancing nutrient cycling, since tree roots can capture nutrients not taken up by crops. However, greenhouse gas emission ...

SAMPLING STRATEGIES FOR ESTIMATING THE MAGNITUDE AND IMPORTANCE OF INTERNAL PHOSPHORUS SUPPLIES IN LAKES

EPA Science Inventory

The physical and chemical factors controlling sediment release and water column cycling of phosphorus and other nutrients (internal loading) are discussed within a 'systems' framework. Applying the systems approach, time-dependent nutrient storage within identified compartments, ...

Modeling long-term changes in tundra carbon balance following wildfire, climate change, and potential nutrient addition.

PubMed

Jiang, Yueyang; Rastetter, Edward B; Shaver, Gaius R; Rocha, Adrian V; Zhuang, Qianlai; Kwiatkowski, Bonnie L

2017-01-01

To investigate the underlying mechanisms that control long-term recovery of tundra carbon (C) and nutrients after fire, we employed the Multiple Element Limitation (MEL) model to simulate 200-yr post-fire changes in the biogeochemistry of three sites along a burn severity gradient in response to increases in air temperature, CO 2 concentration, nitrogen (N) deposition, and phosphorus (P) weathering rates. The simulations were conducted for severely burned, moderately burned, and unburned arctic tundra. Our simulations indicated that recovery of C balance after fire was mainly determined by the internal redistribution of nutrients among ecosystem components (controlled by air temperature), rather than the supply of nutrients from external sources (e.g., nitrogen deposition and fixation, phosphorus weathering). Increases in air temperature and atmospheric CO 2 concentration resulted in (1) a net transfer of nutrient from soil organic matter to vegetation and (2) higher C : nutrient ratios in vegetation and soil organic matter. These changes led to gains in vegetation biomass C but net losses in soil organic C stocks. Under a warming climate, nutrients lost in wildfire were difficult to recover because the warming-induced acceleration in nutrient cycles caused further net nutrient loss from the system through leaching. In both burned and unburned tundra, the warming-caused acceleration in nutrient cycles and increases in ecosystem C stocks were eventually constrained by increases in soil C : nutrient ratios, which increased microbial retention of plant-available nutrients in the soil. Accelerated nutrient turnover, loss of C, and increasing soil temperatures will likely result in vegetation changes, which further regulate the long-term biogeochemical succession. Our analysis should help in the assessment of tundra C budgets and of the recovery of biogeochemical function following fire, which is in turn necessary for the maintenance of wildlife habitat and tundra vegetation. © 2016 by the Ecological Society of America.

Nitrogen cycling models and their application to forest harvesting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, D.W.; Dale, V.H.

1986-01-01

The characterization of forest nitrogen- (N-) cycling processes by several N-cycling models (FORCYTE, NITCOMP, FORTNITE, and LINKAGES) is briefly reviewed and evaluated against current knowledge of N cycling in forests. Some important processes (e.g., translocation within trees, N dynamics in decaying leaf litter) appear to be well characterized, whereas others (e.g., N mineralization from soil organic matter, N fixation, N dynamics in decaying wood, nitrification, and nitrate leaching) are poorly characterized, primarily because of a lack of knowledge rather than an oversight by model developers. It is remarkable how well the forest models do work in the absence of datamore » on some key processes. For those systems in which the poorly understood processes could cause major changes in N availability or productivity, the accuracy of model predictions should be examined. However, the development of N-cycling models represents a major step beyond the much simpler, classic conceptual models of forest nutrient cycling developed by early investigators. The new generation of computer models will surely improve as research reveals how key nutrient-cycling processes operate.« less

An evaluation of the sustainability of onsite wastewater treatment systems for nutrient management.

PubMed

Diaz-Elsayed, Nancy; Xu, Xiaofan; Balaguer-Barbosa, Maraida; Zhang, Qiong

2017-09-15

The impairment of water bodies from nutrient pollution is a challenging environmental problem that could lead to high eutrophic conditions, fish kills, and human illness, while negatively impacting industries that rely on thriving water bodies. Onsite wastewater treatment systems (OWTSs) are a major source of nutrients, however no prior studies have conducted a holistic sustainability assessment of OWTSs that considers their ability to manage nutrients at the household-level in the United States. The aim of this study is therefore to evaluate the environmental and economic impacts of conventional and advanced OWTSs with respect to their ability to remove total nitrogen (TN). Septic tank and drainfield materials were varied for conventional systems, and the advanced systems evaluated consisted of aerobic treatment units (ATUs) and passive nitrogen reduction systems (PNRSs) with nitrification and denitrification stages. Life cycle assessment and life cycle cost analysis were performed to evaluate OWTSs operating in different soil and temperature conditions. Nutrient management of the advanced OWTSs outperformed the conventional systems (96.7-100% vs. 61-65% TN removal), and resulted in less than 40% of the freshwater (0.06-0.14 vs. 0.37-0.40 kg P-eq/kg TN) and marine eutrophication (0.04-0.06 vs. 0.54-0.65 kg N-eq/kg TN). However, the tradeoff for nutrient management was higher life cycle costs ($101-$121 vs. $45-$58 USD 2015/kg TN) and environmental impacts for the remaining impact categories. Lastly, when the TN removed by the drainfield was <20%, the advanced system had lower impacts than conventional OWTSs across all impact categories except ecotoxicity. Copyright © 2017 Elsevier Ltd. All rights reserved.

[Response of arbuscular mycorrhizal fungal lipid metabolism to symbiotic signals in mycorrhiza].

PubMed

Tian, Lei; Li, Yuanjing; Tian, Chunjie

2016-01-04

Arbuscular mycorrhizal (AM) fungi play an important role in energy flow and nutrient cycling, besides their wide distribution in the cosystem. With a long co-evolution, AM fungi and host plant have formed a symbiotic relationship, and fungal lipid metabolism may be the key point to find the symbiotic mechanism in arbusculart mycorrhiza. Here, we reviewed the most recent progress on the interaction between AM fungal lipid metabolism and symbiotic signaling networks, especially the response of AM fungal lipid metabolism to symbiotic signals. Furthermore, we discussed the response of AM fungal lipid storage and release to symbiotic or non-symbiotic status, and the correlation between fungal lipid metabolism and nutrient transfer in mycorrhiza. In addition, we explored the feedback of the lipolysis process to molecular signals during the establishment of symbiosis, and the corresponding material conversion and energy metabolism besides the crosstalk of fungal lipid metabolism and signaling networks. This review will help understand symbiotic mechanism of arbuscular mycorrhiza fungi and further application in ecosystem.

Analysis of Schizosaccharomyces pombe Meiosis.

PubMed

Yamashita, Akira; Sakuno, Takeshi; Watanabe, Yoshinori; Yamamoto, Masayuki

2017-09-01

Meiosis is a specialized cell cycle that generates haploid gametes from diploid cells. The fission yeast Schizosaccharomyces pombe is one of the best model organisms for studying the regulatory mechanisms of meiosis. S. pombe cells, which normally grow in the haploid state, diploidize by conjugation and initiate meiosis when starved for nutrients, especially nitrogen. Following two rounds of chromosome segregation, spore formation takes place. The switch from mitosis to meiosis is controlled by a kinase, Pat1, and an RNA-binding protein, Mei2. Mei2 is also a key factor for meiosis-specific gene expression. Studies on S. pombe have offered insights into cell cycle regulation and chromosome segregation during meiosis. Here we outline the current understanding of the molecular mechanisms regulating the initiation and progression of meiosis, and introduce methods for the study of meiosis in fission yeast. © 2017 Cold Spring Harbor Laboratory Press.

Effects of elevated atmospheric Co2 and tropospheric O3 on nutrient dynamics: decomposition of leaf litter in trembling aspen and paper birch communities. Plant Soil. 299:65–82.

Treesearch

Lingli Liu; John S. King; Christian P. Giardina

2007-01-01

Atmospheric changes could strongly influence how terrestrial ecosystems function by altering nutrient cycling. We examined how the dynamics of nutrient release from leaf litter responded to two important atmospheric changes: rising atmospheric Co2 and tropospheric O3. We evaluated the independent and combined effects of...

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

PubMed Central

Schneider, Thomas; Keiblinger, Katharina M; Schmid, Emanuel; Sterflinger-Gleixner, Katja; Ellersdorfer, Günther; Roschitzki, Bernd; Richter, Andreas; Eberl, Leo; Zechmeister-Boltenstern, Sophie; Riedel, Kathrin

2012-01-01

Leaf-litter decomposition is a central process in carbon cycling; however, our knowledge about the microbial regulation of this process is still scarce. Metaproteomics allows us to link the abundance and activity of enzymes during nutrient cycling to their phylogenetic origin based on proteins, the ‘active building blocks' in the system. Moreover, we employed metaproteomics to investigate the influence of environmental factors and nutrients on the decomposer structure and function during beech litter decomposition. Litter was collected at forest sites in Austria with different litter nutrient content. Proteins were analyzed by 1-D-SDS-PAGE followed by liquid-chromatography and tandem mass-spectrometry. Mass spectra were assigned to phylogenetic and functional groups by a newly developed bioinformatics workflow, assignments being validated by complementary approaches. We provide evidence that the litter nutrient content and the stoichiometry of C:N:P affect the decomposer community structure and activity. Fungi were found to be the main producers of extracellular hydrolytic enzymes, with no bacterial hydrolases being detected by our metaproteomics approach. Detailed investigation of microbial succession suggests that it is influenced by litter nutrient content. Microbial activity was stimulated at higher litter nutrient contents via a higher abundance and activity of extracellular enzymes. PMID:22402400

The role of oyster restoration and aquaculture in nutrient cycling within a Rhode Island estuary

EPA Science Inventory

Coastal ecosystems are increasingly impacted by over-enrichment of nutrients, which has cascading effects for other organisms. Oyster aquaculture and restoration are hypothesized to mitigate excessive nitrogen (N) loads via benthic denitrification. However, this has not been exam...

Life-cycle analysis on biodiesel production from microalgae: water footprint and nutrients balance.

PubMed

Yang, Jia; Xu, Ming; Zhang, Xuezhi; Hu, Qiang; Sommerfeld, Milton; Chen, Yongsheng

2011-01-01

This research examines the life-cycle water and nutrients usage of microalgae-based biodiesel production. The influence of water types, operation with and without recycling, algal species, geographic distributions are analyzed. The results confirm the competitiveness of microalgae-based biofuels and highlight the necessity of recycling harvested water and using sea/wastewater as water source. To generate 1 kg biodiesel, 3726 kg water, 0.33 kg nitrogen, and 0.71 kg phosphate are required if freshwater used without recycling. Recycling harvest water reduces the water and nutrients usage by 84% and 55%. Using sea/wastewater decreases 90% water requirement and eliminates the need of all the nutrients except phosphate. The variation in microalgae species and geographic distribution are analyzed to reflect microalgae biofuel development in the US. The impacts of current federal and state renewable energy programs are also discussed to suggest suitable microalgae biofuel implementation pathways and identify potential bottlenecks. Copyright © 2010 Elsevier Ltd. All rights reserved.

Role of litter turnover in soil quality in tropical degraded lands of Colombia.

PubMed

León, Juan D; Osorio, Nelson W

2014-01-01

Land degradation is the result of soil mismanagement that reduces soil productivity and environmental services. An alternative to improve degraded soils through reactivation of biogeochemical nutrient cycles (via litter production and decomposition) is the establishment of active restoration models using new forestry plantations, agroforestry, and silvopastoral systems. On the other hand, passive models of restoration consist of promoting natural successional processes with native plants. The objective in this review is to discuss the role of litter production and decomposition as a key strategy to reactivate biogeochemical nutrient cycles and thus improve soil quality in degraded land of the tropics. For this purpose the results of different projects of land restoration in Colombia are presented based on the dynamics of litter production, nutrient content, and decomposition. The results indicate that in only 6-13 years it is possible to detect soil properties improvements due to litter fall and decomposition. Despite that, low soil nutrient availability, particularly of N and P, seems to be major constraint to reclamation of these fragile ecosystems.

Identification of spatiotemporal nutrient patterns in a coastal bay via an integrated k-means clustering and gravity model.

PubMed

Chang, Ni-Bin; Wimberly, Brent; Xuan, Zhemin

2012-03-01

This study presents an integrated k-means clustering and gravity model (IKCGM) for investigating the spatiotemporal patterns of nutrient and associated dissolved oxygen levels in Tampa Bay, Florida. By using a k-means clustering analysis to first partition the nutrient data into a user-specified number of subsets, it is possible to discover the spatiotemporal patterns of nutrient distribution in the bay and capture the inherent linkages of hydrodynamic and biogeochemical features. Such patterns may then be combined with a gravity model to link the nutrient source contribution from each coastal watershed to the generated clusters in the bay to aid in the source proportion analysis for environmental management. The clustering analysis was carried out based on 1 year (2008) water quality data composed of 55 sample stations throughout Tampa Bay collected by the Environmental Protection Commission of Hillsborough County. In addition, hydrological and river water quality data of the same year were acquired from the United States Geological Survey's National Water Information System to support the gravity modeling analysis. The results show that the k-means model with 8 clusters is the optimal choice, in which cluster 2 at Lower Tampa Bay had the minimum values of total nitrogen (TN) concentrations, chlorophyll a (Chl-a) concentrations, and ocean color values in every season as well as the minimum concentration of total phosphorus (TP) in three consecutive seasons in 2008. The datasets indicate that Lower Tampa Bay is an area with limited nutrient input throughout the year. Cluster 5, located in Middle Tampa Bay, displayed elevated TN concentrations, ocean color values, and Chl-a concentrations, suggesting that high values of colored dissolved organic matter are linked with some nutrient sources. The data presented by the gravity modeling analysis indicate that the Alafia River Basin is the major contributor of nutrients in terms of both TP and TN values in all seasons. With this new integration, improvements for environmental monitoring and assessment were achieved to advance our understanding of sea-land interactions and nutrient cycling in a critical coastal bay, the Gulf of Mexico. This journal is © The Royal Society of Chemistry 2012

The mechanism of enhanced wastewater nitrogen removal by photo-sequencing batch reactors based on comprehensive analysis of system dynamics within a cycle.

PubMed

Ye, Jianfeng; Liang, Junyu; Wang, Liang; Markou, Giorgos

2018-07-01

To understand the mechanism of enhanced nitrogen removal by photo-sequencing batch reactors (photo-SBRs), which incorporated microalgal photosynthetic oxygenation into the aerobic phases of a conventional cycle, this study performed comprehensive analysis of one-cycle dynamics. Under a low aeration intensity (about 0.02 vvm), a photo-SBR, illuminated with light at 92.27 μ·mol·m -2 ·s -1 , could remove 99.45% COD, 99.93% NH 4 + -N, 90.39% TN, and 95.17% TP, while the control SBR could only remove 98.36% COD, 83.51% NH 4 + -N, 78.96% TN, and 97.75% TP, for a synthetic domestic sewage. The specific oxygen production rate (SOPR) of microalgae in the photo-SBR could reach 6.63 fmol O 2 ·cell -1 ·h -1 . One-cycle dynamics shows that the enhanced nitrogen removal by photo-SBRs is related to photosynthetic oxygenation, resulting in strengthened nitrification, instead of direct nutrient uptake by microalgae. A too high light or aeration intensity could deteriorate anoxic conditions and thus adversely affect the removal of TN and TP in photo-SBRs. Copyright © 2018 Elsevier Ltd. All rights reserved.

Convergence of soil nitrogen isotopes across global climate gradients

USGS Publications Warehouse

Craine, Joseph M.; Elmore, Andrew J.; Wang, Lixin; Augusto, Laurent; Baisden, W. Troy; Brookshire, E. N. J.; Cramer, Michael D.; Hasselquist, Niles J.; Hobbie, Erik A.; Kahmen, Ansgar; Koba, Keisuke; Kranabetter, J. Marty; Mack, Michelle C.; Marin-Spiotta, Erika; Mayor, Jordan R.; McLauchlan, Kendra K.; Michelsen, Anders; Nardoto, Gabriela B.; Oliveira, Rafael S.; Perakis, Steven S.; Peri, Pablo L.; Quesada, Carlos A.; Richter, Andreas; Schipper, Louis A.; Stevenson, Bryan A.; Turner, Benjamin L.; Viani, Ricardo A. G.; Wanek, Wolfgang; Zeller, Bernd

2015-01-01

Quantifying global patterns of terrestrial nitrogen (N) cycling is central to predicting future patterns of primary productivity, carbon sequestration, nutrient fluxes to aquatic systems, and climate forcing. With limited direct measures of soil N cycling at the global scale, syntheses of the 15 N: 14 N ratio of soil organic matter across climate gradients provide key insights into understanding global patterns of N cycling. In synthesizing data from over 6000 soil samples, we show strong global relationships among soil N isotopes, mean annual temperature (MAT), mean annual precipitation (MAP), and the concentrations of organic carbon and clay in soil. In both hot ecosystems and dry ecosystems, soil organic matter was more enriched in 15 N than in corresponding cold ecosystems or wet ecosystems. Below a MAT of 9.8°C, soil δ15N was invariant with MAT. At the global scale, soil organic C concentrations also declined with increasing MAT and decreasing MAP. After standardizing for variation among mineral soils in soil C and clay concentrations, soil δ15N showed no consistent trends across global climate and latitudinal gradients. Our analyses could place new constraints on interpretations of patterns of ecosystem N cycling and global budgets of gaseous N loss.

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

DOE PAGES

Hemme, Christopher L.; Tu, Qichao; Shi, Zhou; ...

2015-10-31

To understand patterns of geochemical cycling in pristine versus contaminated groundwater ecosystems, pristine shallow groundwater (FW301) and contaminated groundwater (FW106) samples from the Oak Ridge Integrated Field Research Center (OR-IFRC) were sequenced and compared to each other to determine phylogenetic and metabolic difference between the communities. Proteobacteria (e.g., Burkholderia, Pseudomonas) are the most abundant lineages in the pristine community, though a significant proportion ( >55%) of the community is composed of poorly characterized low abundance (individually <1%) lineages. The phylogenetic diversity of the pristine community contributed to a broader diversity of metabolic networks than the contaminated community. In addition, themore » pristine community encodes redundant and mostly complete geochemical cycles distributed over multiple lineages and appears capable of a wide range of metabolic activities. In contrast, many geochemical cycles in the contaminated community appear truncated or minimized due to decreased biodiversity and dominance by Rhodanobacter populations capable of surviving the combination of stresses at the site. In conclusion, these results indicate that the pristine site contains more robust and encodes more functional redundancy than the stressed community, which contributes to more efficient nutrient cycling and adaptability than the stressed community.« less

Convergence of soil nitrogen isotopes across global climate gradients.

PubMed

Craine, Joseph M; Elmore, Andrew J; Wang, Lixin; Augusto, Laurent; Baisden, W Troy; Brookshire, E N J; Cramer, Michael D; Hasselquist, Niles J; Hobbie, Erik A; Kahmen, Ansgar; Koba, Keisuke; Kranabetter, J Marty; Mack, Michelle C; Marin-Spiotta, Erika; Mayor, Jordan R; McLauchlan, Kendra K; Michelsen, Anders; Nardoto, Gabriela B; Oliveira, Rafael S; Perakis, Steven S; Peri, Pablo L; Quesada, Carlos A; Richter, Andreas; Schipper, Louis A; Stevenson, Bryan A; Turner, Benjamin L; Viani, Ricardo A G; Wanek, Wolfgang; Zeller, Bernd

2015-02-06

Quantifying global patterns of terrestrial nitrogen (N) cycling is central to predicting future patterns of primary productivity, carbon sequestration, nutrient fluxes to aquatic systems, and climate forcing. With limited direct measures of soil N cycling at the global scale, syntheses of the (15)N:(14)N ratio of soil organic matter across climate gradients provide key insights into understanding global patterns of N cycling. In synthesizing data from over 6000 soil samples, we show strong global relationships among soil N isotopes, mean annual temperature (MAT), mean annual precipitation (MAP), and the concentrations of organic carbon and clay in soil. In both hot ecosystems and dry ecosystems, soil organic matter was more enriched in (15)N than in corresponding cold ecosystems or wet ecosystems. Below a MAT of 9.8°C, soil δ(15)N was invariant with MAT. At the global scale, soil organic C concentrations also declined with increasing MAT and decreasing MAP. After standardizing for variation among mineral soils in soil C and clay concentrations, soil δ(15)N showed no consistent trends across global climate and latitudinal gradients. Our analyses could place new constraints on interpretations of patterns of ecosystem N cycling and global budgets of gaseous N loss.

Interlinkages between Carbon and Water Residence Times in Peat

NASA Astrophysics Data System (ADS)

Visser, A.; Wilson, R.; Sebestyen, S.; Griffiths, N.; Chanton, J.; Veale, N.; McFarlane, K. J.; Kolka, R. K.; Guilderson, T.

2016-12-01

Peatlands play an important role in the terrestrial carbon cycle. Understanding their response to climate change is crucial to predict their role as carbon sink or source of methane and carbon dioxide to the atmosphere. The hydrology of the peatland plays a crucial role, providing anoxic conditions for peat accumulation and advective transport of nutrients and dissolved organic carbon (DOC) to methanogens at depth. The interlinkages between the hydrology and carbon-cycling at the S1 bog at the Marcell Experimental Forest were investigated as part of the SPRUCE experiment, using a combination of isotopic techniques characterizing the carbon and water ages to assess the role of advective transport in the peat pore water. Tritium and tritiogenic helium concentrations constrain the age of the pore water to less than 10 years, although gas exchange with the atmosphere complicates direct use of 3H/3He dating methods. The pore water ages further constrain the interpretation of the peat, DOC and DIC ages. While carbon-14 values of solid peat decrease from 0‰ at the surface to -550‰ (corresponding to carbon-14 ages of 8 ka) at 2m depth, the DOC and DIC shift from +50‰ to -50‰ at depth. Knowing that the advective transport time of pore water is negligible on this time scale, the shift in carbon-14 of DOC must result from peat decomposition at depth, rather than in situ aging of DOC. Combined with the DOC concentration data, the carbon-cycling rates at the SPRUCE experiment are further constrained. The integrated application of isotopes in the carbon and water cycle emphasizes the importance of understanding peatland hydrology for understanding carbon-cycle dynamics. This work performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344. LLNL-ABS-675107

Nutrient sensing in plant meristems.

PubMed

Francis, Dennis; Halford, Nigel G

2006-04-01

Plants need nutrient to grow and plant cells need nutrient to divide. The meristems are the factories and cells that are left behind will expand and differentiate. However, meristems are not simple homogenous entities; cells in different parts of the meristem do different things. Positional cues operate that can fate cells into different tissue domains. However, founder/stem cells persist in specific locations within the meristem e.g. the quiescent centre of root apical meristem (RAM) and the lower half of the central zone of the shoot apical meristem (SAM). Given the complexity of meristems, do their cells simply respond to a diffusing gradient of photosynthate? This in turn begs the question, why do stem cell populations tend to have longer cell cycles than their immediate descendants given that like all other cells they are directly in the path of diffusing nutrient? In this review, we have examined the extent to which nutrient sensing might be operating in meristems. The scene is set for sugar sensing, the plant cell cycle, SAMs and RAMs. Special emphasis is given to the metabolic regulator, SnRK1 (SNF1-related protein kinase 1), hexokinase and the trehalose pathway in relation to sugar sensing. The unique plant cell cycle gene, cyclin-dependent kinase B1;1 may have evolved to be particularly responsive to sugar signalling pathways. Also, the homeobox gene, STIMPY, emerges strongly as a link between sugar sensing, plant cell proliferation and development. Flowering can be influenced by sucrose and glucose levels and both meristem identity and organ identity genes could well be differentially sensitive to sucrose and glucose signals. We also describe how meristems deal with extra photosynthate as a result of exposure to elevated CO2. What we review are numerous instances of how developmental processes can be affected by sugars/nutrients. However, given the scarcity of knowledge we are unable to provide uncontested links between nutrient sensing and specific activities in meristems.

Effects of mountain tea plantations on nutrient cycling at upstream watersheds

NASA Astrophysics Data System (ADS)

Lin, T.-C.; Shaner, P.-J. L.; Wang, L.-J.; Shih, Y.-T.; Wang, C.-P.; Huang, G.-H.; Huang, J.-C.

2015-11-01

The expansion of agriculture to rugged mountains can exacerbate negative impacts of agricultural activities on ecosystem function. In this study, we monitored streamwater and rainfall chemistry of mountain watersheds at the Feitsui Reservoir Watershed in northern Taiwan to examine the effects of agriculture on watershed nutrient cycling. We found that the greater the proportion of tea plantation cover, the higher the concentrations of fertilizer-associated ions (NO3-, K+) in streamwater of the four mountain watersheds examined; on the other hand, the concentrations of the ions that are rich in soils (SO42-, Ca2+, Mg2+) did not increase with the proportion of tea plantation cover, suggesting that agriculture enriched fertilizer-associated nutrients in streamwater. Of the two watersheds for which rainfall chemistry was available, the one with higher proportion of tea plantation cover had higher concentrations of ions in rainfall and retained less nitrogen in proportion to input compared to the more pristine watershed, suggesting that agriculture can influence atmospheric deposition of nutrients and a system's ability to retain nutrients. As expected, we found that a forested watershed downstream of agricultural activities can dilute the concentrations of NO3- in streamwater by more than 70 %, indicating that such a landscape configuration helps mitigate nutrient enrichment in aquatic systems even for watersheds with steep topography. We estimated that tea plantation at our study site contributed approximately 450 kg ha-1 yr-1 of NO3-N via streamwater, an order of magnitude greater than previously reported for agricultural lands around the globe, which can only be matched by areas under intense fertilizer use. Furthermore, we constructed watershed N fluxes to show that excessive leaching of N, and additional loss to the atmosphere via volatilization and denitrification can occur under intense fertilizer use. In summary, this study demonstrated the pervasive impacts of agricultural activities, especially excessive fertilization, on ecosystem nutrient cycling at mountain watersheds.

Reoxidation of estuarine sediments during simulated resuspension events: Effects on nutrient and trace metal mobilisation

NASA Astrophysics Data System (ADS)

Vidal-Durà, Andrea; Burke, Ian T.; Stewart, Douglas I.; Mortimer, Robert J. G.

2018-07-01

Estuarine environments are considered to be nutrient buffer systems as they regulate the delivery of nutrients from rivers to the ocean. In the Humber Estuary (UK) seawater and freshwater mixing during tidal cycles leads to the mobilisation of oxic surface sediments (0-1 cm). However, less frequent seasonal events can also mobilise anoxic subsurface (5-10 cm) sediments, which may have further implications for the estuarine geochemistry. A series of batch experiments were carried out on surface and subsurface sediments taken from along the salinity gradient of the Humber Estuary. The aim was to investigate the geochemical processes driving major element (N, Fe, S, and Mn) redox cycling and trace metal behaviour during simulated resuspension events. The magnitude of major nutrient and metal release was significantly greater during the resuspension of outer estuarine sediments rather than from inner estuarine sediments. When comparing resuspension of surface versus subsurface sediment, only the outer estuary experiments showed significant differences in major nutrient behaviour with sediment depth. In general, any ammonium, manganese and trace metals (Cu and Zn) released during the resuspension experiments were rapidly removed from solution as new sorption sites (i.e. Fe/Mn oxyhydroxides) formed. Therefore Humber estuary sediments showed a scavenging capacity for these dissolved species and hence may act as an ultimate sink for these elements. Due to the larger aerial extent of the outer estuary intertidal mudflats in comparison with the inner estuary area, the mobilisation of the outer estuary sediments (more reducing and richer in sulphides and iron) may have a greater impact on the transport and cycling of nutrients and trace metals. Climate change-associated sea level rise combined with an increasing frequency of major storm events in temperate zones, which are more likely to mobilise deeper sediment regions, will impact the nutrient and metal inputs to the coastal waters, and therefore enhance the likelihood of eutrophication in this environment.

Nitrogenase (nifH) gene expression in diazotrophic cyanobacteria in the Tropical North Atlantic in response to nutrient amendments

PubMed Central

Turk-Kubo, Kendra A.; Achilles, Katherine M.; Serros, Tracy R. C.; Ochiai, Mari; Montoya, Joseph P.; Zehr, Jonathan P.

2012-01-01

The Tropical North Atlantic (TNAtl) plays a critical role in the marine nitrogen cycle, as it supports high rates of biological nitrogen (N2) fixation, yet it is unclear whether this process is limited by the availability of iron (Fe), phosphate (P) or is co-limited by both. In order to investigate the impact of nutrient limitation on the N2-fixing microorganisms (diazotrophs) in the TNAtl, trace metal clean nutrient amendment experiments were conducted, and the expression of nitrogenase (nifH) in cyanobacterial diazotrophs in response to the addition of Fe, P, or Fe+P was measured using quantitative PCR. To provide context, N2 fixation rates associated with the <10 μm community and diel nifH expression in natural cyanobacterial populations were measured. In the western TNAtl, nifH expression in Crocosphaera, Trichodesmium, and Richelia was stimulated by Fe and Fe+P additions, but not by P, implying that diazotrophs may be Fe-limited in this region. In the eastern TNAtl, nifH expression in unicellular cyanobacteria UCYN-A and Crocosphaera was stimulated by P, implying P-limitation. In equatorial waters, nifH expression in Trichodesmium was highest in Fe+P treatments, implying co-limitation in this region. Nutrient additions did not measurably stimulate N2 fixation rates in the <10 μm fraction in most of the experiments, even when upregulation of nifH expression was evident. These results demonstrate the utility of using gene expression to investigate the physiological state of natural populations of microorganisms, while underscoring the complexity of nutrient limitation on diazotrophy, and providing evidence that diazotroph populations are slow to respond to the addition of limiting nutrients and may be limited by different nutrients on basin-wide spatial scales. This has important implications for our current understanding of controls on N2 fixation in the TNAtl and may partially explain why it appears to be intermittently limited by Fe, P, or both. PMID:23130017

Multivariate Analysis of Multi-tracer and Climatological Data in an Urbanizing, Drought-impacted Watershed

NASA Astrophysics Data System (ADS)

Creech, L. T.; Donahoe, R. J.

2009-12-01

This paper documents water quality conditions of the Lake Tuscaloosa, Alabama water-supply reservoir and its watershed under two end-members of hydrologic and climatic variability. These data afford the opportunity to view water quality in the context of both land use and drought, facilitating the development of coupled hydrologic and water-quality forecast models to guide watershed management decisions. This study demonstrates that even the region’s normal 10-year drought cycle holds the capacity to significantly impact water quality and should be incorporated into watershed models and decision-making. To accomplish the goals of this project, a multi-tracer approach has been adopted to assess solute sources and water-quality impairments induced by land use. The biogeochemical tracers include: Major- and minor-ions, trace metals, nutrient speciation and stable-isotope tracers at natural abundance levels. These tracers are also vital to understand the role of climate variability in the context of a heterogeneous landscape. Eight seasonal sampling events across 23 sample locations and two water years yield 184 discrete water-quality samples representative of a range of landscape variability and climatological conditions. Each sample was analyzed for 27 solute species and relevant indicators of water quality. Climatological data was obtained from public repositories (NCDC, USDA); hydrologic data from stream and precipitation gages within the watershed (USGS). Multivariate statistics are used to facilitate the numerical analysis and interpretation of the resulting data. Measurements of nitrogen speciation were collected to document patterns of nutrient loading and nitrogen cycling. These data are augmented by the analysis of nitrogen and oxygen isotopes of nitrate. These data clarify the extent to which nitrogen is being loaded in the non-growing season as well as the capacity of the lake to assimilate nutrients. Under drought conditions the lake becomes nitrogen-limited at most locations. Yet, despite these low concentrations of dissolved nitrogen, Diel measurements reveal that the lake achieves a eutrophic state (due to algal productivity and decomposition). This ecological state is also associated with elevated coliform bacteria in the lake, at times exceeding regulatory limits. Although the lake assimilates excess dissolved nitrogen via enhanced productivity, the process constitutes a water-resource impairment. In this context, the stable-isotope tracer component of the project both: 1) accounts for nitrogen sources and mixing, and 2) clarifies the relative importance of nitrogen assimilation vs. biogeochemical cycling. Multivariate analyses of nutrient data, plus that of metals and rock-weathering solutes further clarify the fate of nitrogen at times and locations that nitrogen flux is less than in most river basins, and less than existing models might predict. By extension, these data may also afford deeper understanding of the larger Mobile River Basin’s 'missing' nitrogen loads under variable flow conditions. This phenomenon offers a protective effect against even faster eutrophication rates (than already exist) in our coastal waters, yet is incompletely understood.

Interdependence of nutrient metabolism and the circadian clock system: Importance for metabolic health.

PubMed

Ribas-Latre, Aleix; Eckel-Mahan, Kristin

2016-03-01

While additional research is needed, a number of large epidemiological studies show an association between circadian disruption and metabolic disorders. Specifically, obesity, insulin resistance, cardiovascular disease, and other signs of metabolic syndrome all have been linked to circadian disruption in humans. Studies in other species support this association and generally reveal that feeding that is not in phase with the external light/dark cycle, as often occurs with night or rotating shift workers, is disadvantageous in terms of energy balance. As food is a strong driver of circadian rhythms in the periphery, understanding how nutrient metabolism drives clocks across the body is important for dissecting out why circadian misalignment may produce such metabolic effects. A number of circadian clock proteins as well as their accessory proteins (such as nuclear receptors) are highly sensitive to nutrient metabolism. Macronutrients and micronutrients can function as zeitgebers for the clock in a tissue-specific way and can thus impair synchrony between clocks across the body, or potentially restore synchrony in the case of circadian misalignment. Circadian nuclear receptors are particularly sensitive to nutrient metabolism and can alter tissue-specific rhythms in response to changes in the diet. Finally, SNPs in human clock genes appear to be correlated with diet-specific responses and along with chronotype eventually may provide valuable information from a clinical perspective on how to use diet and nutrition to treat metabolic disorders. This article presents a background of the circadian clock components and their interrelated metabolic and transcriptional feedback loops, followed by a review of some recent studies in humans and rodents that address the effects of nutrient metabolism on the circadian clock and vice versa. We focus on studies in which results suggest that nutrients provide an opportunity to restore or, alternatively, can destroy synchrony between peripheral clocks and the central pacemaker in the brain as well as between peripheral clocks themselves. In addition, we review several studies looking at clock gene SNPs in humans and the metabolic phenotypes or tendencies associated with particular clock gene mutations. Targeted use of specific nutrients based on chronotype has the potential for immense clinical utility in the future. Macronutrients and micronutrients have the ability to function as zeitgebers for the clock by activating or modulating specific clock proteins or accessory proteins (such as nuclear receptors). Circadian clock control by nutrients can be tissue-specific. With a better understanding of the mechanisms that support nutrient-induced circadian control in specific tissues, human chronotype and SNP information might eventually be used to tailor nutritional regimens for metabolic disease treatment and thus be an important part of personalized medicine's future.

Lake Diefenbaker: Water Quality Assessment and Modeling for Management under Environmental Change

NASA Astrophysics Data System (ADS)

Sereda, J.; Wheater, H. S.; Hudson, J.; Doig, L.; Liber, K.; Jones, P.; Giesy, J.; Bharadwaj, L.

2011-12-01

Preliminary results are presented for a comprehensive inter-disciplinary study on Lake Diefenbaker initiated by the Global Institute for Water Security to understand the physical and biogeochemical processes affecting water quality under climate change and their policy implications. Lake Diefenbaker is a large reservoir (surface area ~500km2 and Zmean ~33m) located in Southern Saskatchewan, Canada and is a critically-important water resource for Saskatchewan. It receives nearly all of its flow from the South Saskatchewan River, which flows through some of the most urbanized and intense agricultural lands of southern Alberta. As a result these waters contain high levels of nutrients [nitrogen (N) and phosphorus (P)] along with a variety of chemical contaminants characteristic of anthropogenic activity. In addition, riparian and in-lake activities provide local sources of nutrients, from domestic sewage, agriculture and fish farming. The South Saskatchewan River has been identified by the World Wildlife Fund (2009) as Canada's most threatened river in terms of environmental flow. Lake Diefenbaker has numerous large deep embayments (depth >20m) and an annual water level fluctuation of ~6m. A deep thermocline (~25m) forms infrequently. Stratification does not occur throughout the lake. Anecdotal information suggests that the frequency and severity of algal blooms are increasing; although blooms have been sporadic and localized. This localized eutrophication may be related to local stratification patterns, point source nutrient loading, and/or internal lake processes (i.e., internal nutrient loading). A paleolimnological reconstruction has begun to assess historical nutrient and contaminant loading to Lake Diefenbaker and hence the trajectory of water quality in the lake. Major point sources and diffuse sources of N and P are also under investigation. In addition, the type (N versus P) and degree of nutrient limitation of bacteria and algae are being assessed (spatially and temporally). Concentrations of nutrients are heterogeneous throughout the lake. Preliminary results indicate that the degree and type of nutrient limitation, along with the cycling of phosphorus (uptake and regeneration) by plankton assemblages varies spatially and temporally. This information will be coupled with an understanding of the physical characteristics of the lake (i.e., mixing patterns) to explain the timing and distribution of algal blooms. A model will be developed to provide a platform for water and nutrient simulations to explore lake response to scenarios of climate and land use change, and the potential effects of local and regional management interventions. The research includes a community based participatory research program, which has involved key stakeholders in research definition and experimental design and ongoing discussion of research progress, and will include participation in management recommendations.

Coupling of the spatial-temporal distributions of nutrients and physical conditions in the southern Yellow Sea

NASA Astrophysics Data System (ADS)

Wei, Qin-Sheng; Yu, Zhi-Gang; Wang, Bao-Dong; Fu, Ming-Zhu; Xia, Chang-Shui; Liu, Lu; Ge, Ren-Feng; Wang, Hui-Wu; Zhan, Run

2016-04-01

This study investigated the coupling of the spatial-temporal variations in nutrient distributions and physical conditions in the southern Yellow Sea (SYS) using data compiled from annual-cycle surveys conducted in 2006-2007 as well as satellite-derived sea-surface temperature (SST) images. The influence of physical dynamics on the distribution and transport of nutrients varied spatially and seasonally in the SYS. The Changjiang Diluted Water (CDW) plume (in summertime), the Subei Coastal Water (SCW) (year-round), and the Lubei Coastal Current (LCC) (in wintertime) served as important sources of nutrients in the inshore area in a dynamic environment. The saline Taiwan Warm Current (TWC) might transport nutrients to the northeast region of the Changjiang Estuary in the summer, and this nutrient source began to increase from spring to summer and decrease when autumn arrived. Three types of nutrient fronts, i.e., estuarine, offshore, and coastal, were identified. A circular nutrient front caused by cross-shelf transport of SCW in the southeast shelf bank area in the winter and spring was observed. The southeastward flow of western coastal cold water in the SYS might be an important conduit for cross-shelf nutrient exchange between the SYS and the East China Sea (ECS). The tongue-shaped low-nutrient region in the western study area in the wintertime was driven by the interaction of the southward Yellow Sea Western Coastal Current (YSWCC) and the biological activity. The vertically variable SCM (subsurface Chl-a maximum) in the central SYS was controlled by coupled physical-chemical processes that involved stratification and associated nutricline. The average nutrient fluxes into the euphotic zone due to upwelling near the frontal zone of the Yellow Sea Cold Water Mass (YSCWM) in the summer are estimated here for the first time: 1.4 ± 0.9 × 103 μmol/m2/d, 0.1 ± 0.1 × 103 μmol/m2/d, and 2.0 ± 1.3 × 103 μmol/m2/d for DIN, PO4-P, and SiO3-Si, respectively. The depletion of nutrients in the central SYS and the upwelled transport in the boundary of the YSCWM resulted in a spatial transfer of the high Chl-a zone, varying generally from the central SYS to the boundary of the YSCWM from spring to summer, and the nutrient flux associated with this upwelling could contribute significantly to local primary production. This study deepens our understanding of the mechanisms influencing the distribution and transport of nutrients in the SYS.

Photodegradation alleviates the lignin bottleneck for carbon turnover in terrestrial ecosystems

PubMed Central

Austin, Amy T.; Méndez, M. Soledad; Ballaré, Carlos L.

2016-01-01

A mechanistic understanding of the controls on carbon storage and losses is essential for our capacity to predict and mitigate human impacts on the global carbon cycle. Plant litter decomposition is an important first step for carbon and nutrient turnover, and litter inputs and losses are essential in determining soil organic matter pools and the carbon balance in terrestrial ecosystems. Photodegradation, the photochemical mineralization of organic matter, has been recently identified as a mechanism for previously unexplained high rates of litter mass loss in arid lands; however, the global significance of this process as a control on carbon cycling in terrestrial ecosystems is not known. Here we show that, across a wide range of plant species, photodegradation enhanced subsequent biotic degradation of leaf litter. Moreover, we demonstrate that the mechanism for this enhancement involves increased accessibility to plant litter carbohydrates for microbial enzymes. Photodegradation of plant litter, driven by UV radiation, and especially visible (blue–green) light, reduced the structural and chemical bottleneck imposed by lignin in secondary cell walls. In leaf litter from woody species, specific interactions with UV radiation obscured facilitative effects of solar radiation on biotic decomposition. The generalized effect of sunlight exposure on subsequent microbial activity, mediated by increased accessibility to cell wall polysaccharides, suggests that photodegradation is quantitatively important in determining rates of mass loss, nutrient release, and the carbon balance in a broad range of terrestrial ecosystems. PMID:27044070

Nutrient Removal and Resource Recovery: Effect on Life Cycle Cost and Environmental Impacts of Small Scale Wastewater Treatment

EPA Science Inventory

Many communities across the U.S. are required to upgrade wastewater treatment plants (WWTP) to meet increasingly stringent nutrient effluent standards. However, increased capital, energy and chemical requirements of upgrades create potential trade-offs between eutrophication pote...

Top-down effects of a terrestrial frog on forest nutrient dynamics.

Treesearch

Karen H. Beard; Kristiina A. Vogt; Andrew Kulmatiski

2002-01-01

Many studies have found top-down effects of predators on prey, but few studies have linked top-down effects of vertebrate predators to nutrient cycling rates in terrestrial systems. In this study, large and significant effects of a terrestrial frog, Eleutherodactylus coqui (coqu

A mechanistic soil biogeochemistry model with explicit representation of microbial and macrofaunal activities and nutrient cycles

NASA Astrophysics Data System (ADS)

Fatichi, Simone; Manzoni, Stefano; Or, Dani; Paschalis, Athanasios

2016-04-01

The potential of a given ecosystem to store and release carbon is inherently linked to soil biogeochemical processes. These processes are deeply connected to the water, energy, and vegetation dynamics above and belowground. Recently, it has been advocated that a mechanistic representation of soil biogeochemistry require: (i) partitioning of soil organic carbon (SOC) pools according to their functional role; (ii) an explicit representation of microbial dynamics; (iii) coupling of carbon and nutrient cycles. While some of these components have been introduced in specialized models, they have been rarely implemented in terrestrial biosphere models and tested in real cases. In this study, we combine a new soil biogeochemistry model with an existing model of land-surface hydrology and vegetation dynamics (T&C). Specifically the soil biogeochemistry component explicitly separates different litter pools and distinguishes SOC in particulate, dissolved and mineral associated fractions. Extracellular enzymes and microbial pools are explicitly represented differentiating the functional roles of bacteria, saprotrophic and mycorrhizal fungi. Microbial activity depends on temperature, soil moisture and litter or SOC stoichiometry. The activity of macrofauna is also modeled. Nutrient dynamics include the cycles of nitrogen, phosphorous and potassium. The model accounts for feedbacks between nutrient limitations and plant growth as well as for plant stoichiometric flexibility. In turn, litter input is a function of the simulated vegetation dynamics. Root exudation and export to mycorrhiza are computed based on a nutrient uptake cost function. The combined model is tested to reproduce respiration dynamics and nitrogen cycle in few sites where data were available to test plausibility of results across a range of different metrics. For instance in a Swiss grassland ecosystem, fine root, bacteria, fungal and macrofaunal respiration account for 40%, 23%, 33% and 4% of total belowground respiration, respectively. Root exudation and carbon export to mycorrhizal represent about 7% of plant Net Primary Production. The model allows exploring the temporal dynamics of respiration fluxes from the different ecosystem components and designing virtual experiments on the controls exerted by environmental variables and/or soil microbes and mycorrhizal associations on soil carbon storage, plant growth, and nutrient leaching.

The soil microbiome — from metagenomics to metaphenomics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jansson, Janet K.; Hofmockel, Kirsten S.

Soil microorganisms carry out important processes, including support of plant growth and cycling of carbon and other nutrients. However, the majority of soil microbes have not yet been isolated and their functions are largely unknown. Although metagenomic sequencing reveals microbial identities and functional gene information, it includes DNA from microbes with vastly varying physiological states. Therefore, metagenomics is only predictive of community functional potential. We posit that the next frontier lies in understanding the metaphenome, the product of the combined genetic potential of the microbiome and available resources. Here in this paper we describe examples of opportunities towards gaining understandingmore » of the soil metaphenome.« less

The soil microbiome — from metagenomics to metaphenomics

DOE PAGES

Jansson, Janet K.; Hofmockel, Kirsten S.

2018-02-15

Soil microorganisms carry out important processes, including support of plant growth and cycling of carbon and other nutrients. However, the majority of soil microbes have not yet been isolated and their functions are largely unknown. Although metagenomic sequencing reveals microbial identities and functional gene information, it includes DNA from microbes with vastly varying physiological states. Therefore, metagenomics is only predictive of community functional potential. We posit that the next frontier lies in understanding the metaphenome, the product of the combined genetic potential of the microbiome and available resources. Here in this paper we describe examples of opportunities towards gaining understandingmore » of the soil metaphenome.« less

Spatially Resolved Carbon Isotope and Elemental Analyses of the Root-Rhizosphere-Soil System to Understand Below-ground Nutrient Interactions

NASA Astrophysics Data System (ADS)

Denis, E. H.; Ilhardt, P.; Tucker, A. E.; Huggett, N. L.; Rosnow, J. J.; Krogstad, E. J.; Moran, J.

2017-12-01

The intimate relationships between plant roots, rhizosphere, and soil are fostered by the release of organic compounds from the plant (through various forms of rhizodeposition) into soil and the simultaneous harvesting and delivery of inorganic nutrients from the soil to the plant. This project's main goal is to better understand the spatial controls on bi-directional nutrient exchange through the rhizosphere and how they impact overall plant health and productivity. Here, we present methods being developed to 1) spatially track the release and migration of plant-derived organics into the rhizosphere and soil and 2) map the local inorganic geochemical microenvironments within and surrounding the rhizosphere. Our studies focused on switchgrass microcosms containing soil from field plots at the Kellogg Biological Station (Hickory Corners, Michigan), which have been cropped with switchgrass for nearly a decade. We used a 13CO2 tracer to label our samples for both one and two diel cycles and tracked subsequent movement of labeled organic carbon using spatially specific δ13C analysis (with 50 µm resolution). The laser ablation-isotope ratio mass spectrometry (LA-IRMS) approach allowed us to map the extent of 13C-label migration into roots, rhizosphere, and surrounding soil. Preliminary results show the expected decrease of organic exudates with distance from a root and that finer roots (<0.1 mm) incorporated more 13C-label than thicker roots, which likely correlates to specific root growth rates. We are adapting both laser induced breakdown spectroscopy (LIBS) and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) to spatially map inorganic nutrient content in the exact same samples used for LA-IRMS analysis. Both of these methods provide rapid surface mapping of a wide range of elements (with high dynamic range) at 150 μm spatial resolution. Preliminary results show that, based on elemental content, we can distinguish between roots, rhizosphere, soil, and specific types of mineral grains within soil. Integrating spatially resolved analysis of photosynthate distribution with local geochemical microenvironments may reveal key properties of nutrient exchange hotspots that help direct overall plant health and productivity.

Rapid alkalization in Lake Inawashiro, Fukushima, Japan: implications for future changes in the carbonate system of terrestrial waters

NASA Astrophysics Data System (ADS)

Manaka, T.; Ushie, H.; Araoka, D.; Inamura, A.; Suzuki, A.; Kawahata, H.

2013-12-01

The global carbon cycle, one of the important biogeochemical cycles controlling the surface environment of the Earth, has been greatly affected by human activity. Anthropogenic nutrient loading from urban sewage and agricultural runoff has caused eutrophication of aquatic systems. The impact of this eutrophication and consequent photosynthetic activity on CO2 exchange between freshwater systems and the atmosphere is unclear. In this study, we focused on how nutrient loading to lakes affects their carbonate system. Here, we report results of surveys of lakes in Japan at different stages of eutrophication. Alkalization due to photosynthetic activity and decreases in PCO2 had occurred in eutrophic lakes (e.g., Lake Kasumigaura), whereas in an acidotrophic lake (Lake Inawashiro) that was impacted by volcanic hot springs, nutrient loading was changing the pH and carbon cycling. When the influence of volcanic activity was stronger in the past in Lake Inawashiro, precipitation of volcanic-derived iron and aluminum had removed nutrients by co-precipitation. During the last three decades, volcanic activity has weakened and the lake water has become alkalized. We inferred that this rapid alkalization did not result just from the reduction in acid inputs but was also strongly affected by increased photosynthetic activity during this period. Human activities affect many lakes in the world. These lakes may play an important part in the global carbon cycle through their influence on CO2 exchange between freshwater and the atmosphere. Biogeochemical changes and processes in these systems have important implications for future changes in aquatic carbonate systems on land.

Constraints on Ca/Sr as a Proxy for Calcium in Forest Ecosystems

NASA Astrophysics Data System (ADS)

Hoff, C. J.; Hobbie, E. A.; Hallett, R.; Colpaert, J.; Bryce, J. G.

2004-05-01

Calcium is a key plant nutrient and important base cation in ecosystems. Our current efforts to quantify Ca cycling in ecosystems rely on indirect proxies, e.g., Ca/Sr or Sr isotopic systems (1). An important assumption in these applications is that the elemental ratio of calcium to strontium faithfully represents calcium cycling and that little fractionation occurs through biogeochemical and physiological processes. However, several researchers have reported variations in Ca/Sr, e.g. among different tree tissues (2) and during weathering processes (3), raising doubts about the suitability of the proxy. To address the question of reliability, we measured Ca/Sr values in a culture study in which Scots pines were grown at low or high nutrient supply rates (3% per day or 5% per day). Because mycorrhizal fungi are intimately involved in plant nutrient supply, plants were also grown either uncolonized or colonized with one of two different species of mycorrhizal fungi (Suillus luteus and Thelephora terrestris). Our preliminary results indicate that Ca/Sr values differ between high and low nutrient treatments, root and foliage, and mycorrhizal treatments. In individual seedlings, roots have lower Ca/Sr than foliage by absolute factors of 2-5. The magnitude of the effect is apparently determined by a combination of environmental factors including both the nutrient and mycorrhizal treatments. These results indicate that Ca and Sr are partitioned differently between nutrient and mycorrhizal treatments and between plant fractions despite the common nutrient broth and substrate. Thus, Ca/Sr values alone are not reliable tracers of Ca within an ecosystem because of partitioning of Ca and Sr during nutrient transport within the plant-mycorrhizal system. We are presently refining analytical techniques and conducting leachate experiments to improve the quantification of this Ca/Sr fractionation. We are also exploring the use of isotopic tracers to study calcium biogeochemical cycling in forest ecosystems. (1) Blum, J.D., et al. 2002. Nature 417: 729-731. (2) Bailey, S.W., et al. 1996. Water Resources Research 32: 707-719. (3) Vitousek, P.M., et al. 1999. Oecologia 121: 255- 259.

Divergent trajectories in tropical rainforest carbon-climate relationships: results from a new tropical forest carbon inventory database

NASA Astrophysics Data System (ADS)

Taylor, P.; Wieder, W.; Townsend, A.; Asner, G. P.; Cleveland, C.; Loarie, S.

2010-12-01

Intact tropical rainforests play a disproportionate role in the terrestrial carbon (C) cycle because they exchange more CO2 with the atmosphere than any other biome. As with any ecosystem, climate controls rates of C uptake and storage; however, the specific nature of climate-carbon relationships in the tropics remains poorly understood and oft-debated. Consequently, there are major uncertainties in how human-driven climate change may alter tropical C storage. One way to investigate climate - forest C interactions is via meta-analyses that examine shifts in forest C dynamics along climatic gradients. Past such analyses for the role of precipitation suggest tropical aboveground net primary production (ANPP) peaks near 2500 mm/yr, and then sharply declines in wetter regions. However, the downturn in ANPP is driven by a bias in early databases toward montane forests, which may exhibit temperature-driven biogeochemical feedbacks not present in wet lowland forests. To address this possibility, we assembled a tropical forest carbon dynamics database that includes nearly 900 different sites. We found substantial divergence in montane versus lowland forest ANPP responses to shifts in rainfall. As previous analyses imply, montane forest ANPP shows a distinct “hump-shaped” pattern, with a downturn in wetter sites. However, in contrast to prevailing assumptions, we find that lowland forest ANPP and biomass remain steady or increase with increasing rainfall. The data suggest that temperature plays a key role in determining the shape of rainfall - forest C interactions by regulating plant-soil nutrient feedbacks that underlie trends in ANPP. In montane systems, lower temperatures under wet conditions allow the development of organic horizons and the persistence of low redox conditions that reduce fertility, but in lowland systems, higher temperatures prevent organic matter accumulation, and high precipitation appears to drive rapid exchanges of nutrients between litter and soil. Furthermore, in lowland forests, we find that ANPP-rainfall relationships stratify by soil order, with the highest ANPP values occurring on nutrient-rich inceptisols, and the lowest values on nutrient poor oxisols and spodosols. Our findings have important implications for tropical forest C cycling. The data for lowland systems suggest a revision in our understanding of basic climate - forest C relations, and the possibility that the wettest of lowland forests - zones that are often subject to lower rates of deforestation and degradation - may be global hotspots for C uptake and storage. In addition, our data strongly suggest the importance of nutrient availability to determining rates of C exchange and storage in the tropics, and their response to climate, and hence the need for coupled carbon-climate models that can explicitly consider multiple biogeochemical cycles.

Nitrogen Cycle Modeling: a Mechanistic Estimate of N-losses From Agricultural Fields Over the Seasonal Time Period

NASA Astrophysics Data System (ADS)

Maggi, F.; Gu, C.; Venterea, R.; Riley, W.; Oldenburg, C.

2007-12-01

The biogeochemical cycle of nitrogen and production of NO, N2O, and CO2 gas and NO2- and NO3- ions in nutrient-enriched agricultural fields is mediated by soil microbial activity, the hydrological cycle, plant dynamics, and climatic forcing. Understanding how NO, N2O, CO2 gases and NO2- and NO3- ions are released from agricultural fields to the environment is a key factor in controlling the green-house effect and water contamination, and assumes ever greater importance in view of the foreseen increase in biofuel, food, and fiber production. To address these issues we have developed a mechanistic model (TOUGHREACT-N) for various nitrification and denitrification pathways, multiple microbial biomass dynamics, heat and water flows, and various chemical reactions at local and kinetic equilibrium. The soil column is represented in a 1D framework, with hydraulic properties described by a water tension-saturation model. Biotic and abiotic reactions are assumed to follow Michaelis-Menten kinetics, while a consortium of several micro-organismal strains is assumed to follow multiple Monod growth kinetics accounting for electron donor, electron acceptor, and inhibitor concentrations. Water flow is modeled with the Darcy-Richards equation, while nutrient transport is modeled by Fickian advective and diffusive processes in both gaseous and liquid phases. Heat flow is modeled with the Fourier equation. Plant dynamics is taken into account by coupling TOUGHREACT-N with CERES to determine water and nutrient uptake, and soil carbon accumulation. TOUGHREACT-N was calibrated against field measurements to assess pathways of N losses following fertilization. A good agreement between field observations and model predictions was found. We identified two dominant time scales in the system response that depended on plants dynamics. Before plants have substantial impact on soil nutrients and moisture content, N losses are characterized by rapid increases as a function of water application rate and fertilizer amount and application depth. Under reference fertilization and irrigation practices, approximately 1.64% and 1.61% of the total applied N is lost as N-NO(g) and N-N2O(g), respectively, while losses of N-N2(g), N-NO2-, and N-NO3- where several orders of magnitude smaller. When plants grow, pulses in N losses became smoother due to nutrient and water uptake. Contrarily to predictions of non- mechanistic, coarse-scale models (e.g., CASA, CENTURY) N losses are predominantly non-linearly increasing with fertilizer and water application amount, and with fertilizer application depth, thus invoking a revision of long- term estimates of nitrogen and carbon balances at global scales

Multi-Omics Profiling of Phytoplankton Community Metabolism: Linking Meta-Transcriptomics and Metabolomics to Elucidate Phytoplankton Physiology in a Model Coastal System

NASA Astrophysics Data System (ADS)

Kujawinski, E. B.; Longnecker, K.; Alexander, H.; Dyhrman, S.; Jenkins, B. D.; Rynearson, T. A.

2016-02-01

Phytoplankton blooms in coastal areas contribute a large fraction of primary production to the global oceans. Despite their central importance, there are fundamental unknowns in phytoplankton community metabolism, which limit the development of a more complete understanding of the carbon cycle. Within this complex setting, the tools of systems biology hold immense potential for profiling community metabolism and exploring links to the carbon cycle, but have rarely been applied together in this context. Here we focus on phytoplankton community samples collected from a model coastal system over a three-week period. At each sampling point, we combined two assessments of metabolic function: the meta-transcriptome, or the genes that are expressed by all organisms at each sampling point, and the metabolome, or the intracellular molecules produced during the community's metabolism. These datasets are inherently complementary, with gene expression likely to vary in concert with the concentrations of metabolic intermediates. Indeed, preliminary data show coherence in transcripts and metabolites associated with nutrient stress response and with fixed carbon oxidation. To date, these datasets are rarely integrated across their full complexity but together they provide unequivocal evidence of specific metabolic pathways by individual phytoplankton taxa, allowing a more comprehensive systems view of this dynamic environment. Future application of multi-omic profiling will facilitate a more complete understanding of metabolic reactions at the foundation of the carbon cycle.

Modeling carbon-nutrient interactions during the early recovery of tundra after fire.

PubMed

Jiang, Yueyang; Rastetter, Edward B; Rocha, Adrian V; Pearce, Andrea R; Kwiatkowski, Bonnie L; Shaver, Gaius R

2015-09-01

Fire frequency has dramatically increased in the tundra of northern Alaska, USA, which has major implications for the carbon budget of the region and the functioning of these ecosystems, which support important wildlife species. We investigated the postfire succession of plant and soil carbon (C), nitrogen (N), and phosphorus (P) fluxes and stocks along a burn severity gradient in the 2007 Anaktuvuk River fire scar in northern Alaska. Modeling results indicated that the early regrowth of postfire tundra vegetation was limited primarily by its canopy photosynthetic potential, rather than nutrient availability, because of the initially low leaf area and relatively high inorganic N and P concentrations in soil. Our simulations indicated that the postfire recovery of tundra vegetation was sustained predominantly by the uptake of residual inorganic N (i.e., in the remaining ash), and the redistribution of N and P from soil organic matter to vegetation. Although residual nutrients in ash were higher in the severe burn than the moderate burn, the moderate burn recovered faster because of the higher remaining biomass and consequent photosynthetic potential. Residual nutrients in ash allowed both burn sites to recover and exceed the unburned site in both aboveground biomass and production five years after the fire. The investigation of interactions among postfire C, N, and P cycles has contributed to a mechanistic understanding of the response of tundra ecosystems to fire disturbance. Our study provided insight on how the trajectory of recovery of tundra from wildfire is regulated during early succession.

Effects of nutrient input on phytoplankton productivity and community structure in the Grand Bay estuary in Mississippi

NASA Astrophysics Data System (ADS)

Baine, G. C., II; Caffrey, J. M.

2016-02-01

The estuarine system at Grand Bay National Estuarine Research Reserve in Mississippi is a near pristine wetland home to a diversity of flora and fauna. While seasonal fluctuations in water quality are well understood, less is known about the coupled dynamics of water quality and phytoplankton production. Light availability and nutrient levels are key factors regulating phytoplankton. Previous studies have revealed Grand Bay to primarily be limited by nitrogen rather than phosphorus or light. Since then, extended phosphate inputs from the neighboring Mississippi Phosphates fertilizer plant have occurred provoking the question: will the phosphate inputs affect the growth and structure of the phytoplankton communities? This study is investigating the effects of inputs of an array of nutrients (ammonium, nitrate, silicon, and phosphate) on phytoplankton growth, community structure, and production over an annual cycle. Phytoplankton production is being monitored by accumulation of biomass (chlorophyll a concentration) and C14 incorporation. We are also evaluating changes in the phytoplankton community composition using Flowcam imaging over the course of the incubation. Currently the summer months have shown nitrogen limitation as previously observed, with little difference between nitrate and ammonium additions. Flowcam images have revealed increases in ciliate abundance in all treatments. C14 experiments show significant decreases in efficiency for all treatments compared to the initial condition, however there is no significant variation among treatments. The results of this study will provide a strong foundation in understanding the nature of phytoplankton response to various nutrient inputs in Grand Bay.

Advantages and mechanisms of polarity and cell shape determination in Caulobacter crescentus.

PubMed

Lawler, Melanie L; Brun, Yves V

2007-12-01

The tremendous diversity of bacterial cell shapes and the targeting of proteins and macromolecular complexes to specific subcellular sites strongly suggest that cellular organization provides important advantages to bacteria in their environment. Key advances have been made in the understanding of the mechanism and function of polarity and cell shape by studying the aquatic bacterium Caulobacter crescentus, whose cell cycle progression involves the ordered synthesis of different polar structures, and culminates in the biosynthesis of a thin polar cell envelope extension called the stalk. Recent results indicate that the important function of polar development is to maximize cell attachment to surfaces and to improve nutrient uptake by nonmotile and attached cells. Major progress has been made in understanding the regulatory network that coordinates polar development and morphogenesis and the role of polar localization of regulatory proteins.

Dynamics of nutrient cycling and related benthic nutrient and oxygen fluxes during a spring phytoplankton bloom in South San Francisco Bay (USA)

USGS Publications Warehouse

Grenz, C.; Cloern, J.E.; Hager, S.W.; Cole, B.E.

2000-01-01

Benthic oxygen uptake and nutrient releases of N, P and Si were measured weekly at 2 sites in South San Francisco Bay around the 1996 spring bloom. Exchanges across the sediment-water interface were estimated from whole core incubations performed in the laboratory at in situ temperature and in dark. Fluxes changed significantly on a weekly time scale. Over a period of 15 wk the fluxes of dissolved inorganic N, P and Si ranged from -40 to +200, 0 to 13 and from 30 to 400 ??mol m-2 h-1 respectively. Sediment oxygen demand increased from 10 before to 64 mg O2 m-2 h-1 just after the bloom period. During the bloom, nutrient fluxes represented about 20, 16 and 9% of the Si, P and N requirements for primary production. Before and after the bloom period, Si fluxes contributed up to 30 and > 100% of this requirement and P and N fluxes up to 15 and 50% respectively. Simple empirical models explain most of the spatial-temporal variability of benthic fluxes of Si, P and NH4 (but not NO3) from 3 predictor variables: sediment porosity, nutrient concentration in bottom waters and chlorophyll content of surficial sediments. These models show that algal blooms influence benthic-pelagic nutrient exchange through 2 processes: (1) depletion of nutrients from the water column (which enhances gradient-driven transports across the sediment-water interface) and (2) sedimentation of labile phytodetritus (which promotes remineralization in or on the surficial sediments). Rates and patterns of nutrient cycling were very different at the shallow and deep study sites, illustrating the challenge of extrapolating measurements of coupled algae-nutrient dynamics to whole ecosystems.

Nutrient Distribution Indicated Whole-Tree Harvesting as a Possible Factor Restricting the Sustainable Productivity of a Poplar Plantation System in China

PubMed Central

Ge, Xiaomin; Tian, Ye; Tang, Luozhong

2015-01-01

We evaluated the biomass and contents of five major macronutrients (N, P, K, Ca and Mg) in 10-year-old poplar trees (Populus deltoids Bartr. cv. “Lux”), and determined their nutrient use efficiencies (NUEs) at Zhoushan Forestry Farm (32°20′ N, 119°40′ E), Jiangsu province, in eastern China. The above- and below-ground biomass of poplar trees was 161.7 t ha-1, of which 53.3% was stemwood. The nutrient contents in the aboveground part were as follows: 415.1 kg N ha-1, 29.7 kg P ha-1, 352.0 kg K ha-1, 1083.0 kg Ca ha-1, and 89.8 kg Mg ha-1. The highest nutrient contents were in stembark, followed by branches, roots, stemwood, and foliage. The NUEs of the aboveground parts of poplar for N, P, K, Ca and Mg were 0.313, 4.377, 0.369, 0.120, 1.448 t dry biomass kg-1 nutrient, respectively, while those of stemwood were 1.294, 33.154, 1.253, 0.667, and 3.328 t dry biomass kg-1, respectively. The cycling coefficients, defined as the percentage of annual nutrient return in annual nutrient uptake, of N, P, K, Ca and Mg for the aboveground part were 87, 95, 69, 92, and 84%, respectively. Based on the NUE and nutrient cycling characteristics, shifting from whole-tree harvesting to stemwood-only harvesting and appropriately extending the harvest rotation could prevent site deterioration and support sustainable productivity of poplar plantation systems. PMID:25992549

Terrestrial carbon turnover time constraints on future carbon cycle-climate feedback

NASA Astrophysics Data System (ADS)

Fan, N.; Carvalhais, N.; Reichstein, M.

2017-12-01

Understanding the terrestrial carbon cycle-climate feedback is essential to reduce the uncertainties resulting from the between model spread in prognostic simulations (Friedlingstein et al., 2006). One perspective is to investigate which factors control the variability of the mean residence times of carbon in the land surface, and how these may change in the future, consequently affecting the response of the terrestrial ecosystems to changes in climate as well as other environmental conditions. Carbon turnover time of the whole ecosystem is a dynamic parameter that represents how fast the carbon cycle circulates. Turnover time τ is an essential property for understanding the carbon exchange between the land and the atmosphere. Although current Earth System Models (ESMs), supported by GVMs for the description of the land surface, show a strong convergence in GPP estimates, but tend to show a wide range of simulated turnover times (Carvalhais, 2014). Thus, there is an emergent need of constraints on the projected response of the balance between terrestrial carbon fluxes and carbon stock which will give us more certainty in response of carbon cycle to climate change. However, the difficulty of obtaining such a constraint is partly due to lack of observational data on temporal change of terrestrial carbon stock. Since more new datasets of carbon stocks such as SoilGrid (Hengl, et al., 2017) and fluxes such as GPP (Jung, et al., 2017) are available, improvement in estimating turnover time can be achieved. In addition, previous study ignored certain aspects such as the relationship between τ and nutrients, fires, etc. We would like to investigate τ and its role in carbon cycle by combining observatinoal derived datasets and state-of-the-art model simulations.

Determining the N and O isotope effects of microbial nitrite reduction: the global N cycle implications of an enzyme-dependent isotope effect

NASA Astrophysics Data System (ADS)

Martin, T. S.; Casciotti, K. L.

2014-12-01

The marine nitrogen (N) cycle is a dynamic system of critical importance, since nitrogen is the limiting nutrient in over half of the world's oceans. Denitrification and anammox, the main N loss processes from the ocean, have different effects on carbon cycling and greenhouse gas emission. Understanding the balance between the two processes is vital to understanding the role of the N cycle in global climate change. One approach for investigating these processes is by using stable isotope analysis to estimate the relative magnitudes of N fluxes, particularly for biologically mediated processes. In order to make the most of the currently available isotope analysis techniques, it is necessary to know the isotope effects for each processes occurring in the environment. Nitrite reduction is an important step in denitrification. Previous work had begun to explore the N isotope effects for nitrite reduction, but no oxygen (O) isotope effect has been measured. Additionally, no consideration has been given to the type of nitrite reductase carrying out the reaction. There are two main types of respiratory nitrite reductase, one that is Cu-based and another that is Fe-based. We performed batch culture experiments with denitrifier strains possessing either a Cu-type or Fe-type nitrite reductase. Both N and O isotope effects for nitrite reduction were determined for each of these experiments by measuring the NO2- concentration, as well as the N and O isotopes of nitrite and applying a Rayleigh fractionation model. Both the N and O isotope effects were found to be significantly different between the two types of enzymes. This enzyme-linked difference in isotope effects emphasizes the importance of microbial community composition within the global N cycle.

Treated and untreated wastewater effluents alter river sediment bacterial communities involved in nitrogen and sulphur cycling.

PubMed

Martínez-Santos, Miren; Lanzén, Anders; Unda-Calvo, Jessica; Martín, Iker; Garbisu, Carlos; Ruiz-Romera, Estilita

2018-08-15

Studying the dynamics of nitrogen and sulphur cycling bacteria in river surface sediments is essential to better understand their contribution to global biogeochemical cycles. Evaporitic rocks settled at the headwater of the Deba River catchment (northern Spain) lead to high values of sulphate concentration in its waters. Besides, the discharge of effluents from untreated and treated residual (urban and industrial) wastewaters increases the concentration of metals, nutrients and organic compounds in its mid- and low-water courses. The aim of this study was to assess the impact of anthropogenic contamination from untreated and treated residual and industrial wastewaters on the structure and function of bacterial communities present in surface sediments of the Deba River catchment. The application of a quantitative functional approach (qPCR) based on denitrification genes (nir: nirS+nirK; and nosZ), together with a 16S rRNA gene metabarcoding structural analysis, revealed (i) the high relevance of the sulphur cycle at headwater surface sediments (as reflected by the abundance of members of the Syntrophobacterales order, and the Sulfuricurvum and Thiobacillus genera) and (ii) the predominance of sulphide-driven autotrophic denitrification over heterotrophic denitrification. Incomplete heterotrophic denitrification appeared to be predominant in surface sediments strongly impacted by treated and untreated effluents, as reflected by the lower values of the nosZ/nir ratio, thus favouring N 2 O emissions. Understanding nitrogen and sulphur cycling pathways has profound implications for the management of river ecosystems, since this knowledge can help us determine whether a specific river is acting or not as a source of greenhouse gases (i.e., N 2 O). Copyright © 2018 Elsevier B.V. All rights reserved.

Ecological Energetic Perspectives on Responses of Nitrogen-Transforming Chemolithoautotrophic Microbiota to Changes in the Marine Environment

PubMed Central

Dang, Hongyue; Chen, Chen-Tung A.

2017-01-01

Transformation and mobilization of bioessential elements in the biosphere, lithosphere, atmosphere, and hydrosphere constitute the Earth’s biogeochemical cycles, which are driven mainly by microorganisms through their energy and material metabolic processes. Without microbial energy harvesting from sources of light and inorganic chemical bonds for autotrophic fixation of inorganic carbon, there would not be sustainable ecosystems in the vast ocean. Although ecological energetics (eco-energetics) has been emphasized as a core aspect of ecosystem analyses and microorganisms largely control the flow of matter and energy in marine ecosystems, marine microbial communities are rarely studied from the eco-energetic perspective. The diverse bioenergetic pathways and eco-energetic strategies of the microorganisms are essentially the outcome of biosphere-geosphere interactions over evolutionary times. The biogeochemical cycles are intimately interconnected with energy fluxes across the biosphere and the capacity of the ocean to fix inorganic carbon is generally constrained by the availability of nutrients and energy. The understanding of how microbial eco-energetic processes influence the structure and function of marine ecosystems and how they interact with the changing environment is thus fundamental to a mechanistic and predictive understanding of the marine carbon and nitrogen cycles and the trends in global change. By using major groups of chemolithoautotrophic microorganisms that participate in the marine nitrogen cycle as examples, this article examines their eco-energetic strategies, contributions to carbon cycling, and putative responses to and impacts on the various global change processes associated with global warming, ocean acidification, eutrophication, deoxygenation, and pollution. We conclude that knowledge gaps remain despite decades of tremendous research efforts. The advent of new techniques may bring the dawn to scientific breakthroughs that necessitate the multidisciplinary combination of eco-energetic, biogeochemical and “omics” studies in this field. PMID:28769878

Modeling 400-500-kyr Pleistocene carbon isotope cyclicity through variations in the dissolved organic carbon pool

NASA Astrophysics Data System (ADS)

Ma, Wentao; Wang, Pinxian; Tian, Jun

2017-05-01

The carbon isotope (δ13C) record from the Plio-Pleistocene shows prominent 400-kyr cycles with maximum values at eccentricity minima during the Pliocene. The period extends to 500 kyr in the Pleistocene after 1.6 Ma. Five δ13C maxima occurred at 0.2, 0.5, 1.0, 1.5 and 1.9 Ma over the last 2 Ma. Although several hypotheses have been suggested to explain why the 400-500-kyr cycles are so strong in δ13C records and how they may have originated, the mechanism is still not clear. The aim of this study was to test the dissolved organic carbon (DOC) hypothesis, which was proposed recently to explain this 400-500-kyr cycle in deeper time. We used an intermediate complexity box model that is computationally efficient for studies involving longer timescales. The model incorporates sophisticated microbial processes, dividing the oceanic carbon cycle into a rapid and a slow cycle. The model result suggests that when more nutrients enter the surface ocean, the rapid carbon cycle is more active, and less refractory DOC (RDOC) is produced. The opposite sequence occurs when fewer nutrients enter the ocean. The modeled RDOC concentration and the δ13C of dissolved inorganic carbon (DIC) are anti-correlated with riverine nutrient input. According to mass conservation, the release of isotopically lighter carbon from the RDOC pool leads to lighter DIC δ13C while an increase in the RDOC pool enriches it. The transient simulations produced a one-to-one correspondence between modeled and measured δ13C. This study supports the hypothesis that chemical weathering-induced variations in the DOC pool act as a pacemaker for δ13C changes over 400-500-kyr cycles.

[The influence of labeling format on use and understanding of nutrition information: results of an experiment in workplace restaurants].

PubMed

Gomez, P; Le Minous, A-E

2012-02-01

Nutrition labeling usually describes food product composition in terms of nutrients. This article aims at investigating the influence of nutrition labeling on use and understanding of nutrition information in workplace restaurants and comparing the difference between a nutrient-based labeling and an alternative labeling based on food groups. In this respect, an experiment was conducted in two workplace restaurants during 4 weeks. Then, a survey was carried out, covering 329 individuals, to assess use and understanding of nutrition information. We found that 42.9% of the sample saw the nutrient labeling and only 5.2% said they used it. Our results show that both labeling formats lead to high understanding. Nutrition labeling format was found to have no significant influence on use and understanding of nutrition information. In spite of these results, food groups labeling were perceived as easier to process than nutrient-based labeling. Understanding is more widespread than use among participants suggesting that the main hurdle to information use comes from a lack of motivation. Food groups labeling are of limited interest compared to nutrient-based labeling. Copyright © 2011 Elsevier Masson SAS. All rights reserved.

The Multi-Scale Response of Water Quality, Biodiversity and Carbon Sequestration to Coupled Macronutrient Cycling from Source to Sea: TURF2SURF

NASA Astrophysics Data System (ADS)

Cosby, B. J., Jr.; Wade, A. J.; Reinsch, S.; Robins, P. E.; Emmett, B.; Jago, C. F.

2015-12-01

Turf2Surf is a large, multi-disciplinary project that aims to test the hypothesis that the spatial and temporal patterns of water quality, C sequestration and biodiversity are better explained through the large-scale coupling of C, N and P cycles than by single cycle, single system approaches. To achieve this, a catchment-scale study of the River Conwy (349 km2) in Wales is being done with emphasis on determining when, where and how coupled macronutrient (C, N, P) cycling occurs in the biogeochemical hot-spots of the soils, the riparian zone, instream and in the river-estuarine transition zone. A major integrated measurement programme is now largely complete. New data are being analysed to understand which soil properties have greatest influence on above and below-ground productivity including plant traits and how microbial processing is controlled by stoichiometry and nutrient priming. Within the stream network, new understanding is being produced on the in-river algal and whole ecosystem (metabolic) response to CNP additions and the factors affecting the fate and cycling of organic matter. In the estuary, initial results indicate a subsurface jet is causing stratification and a velocity anomaly has been observed. Both are important in terms of suspended matter transport and floc break-up. An integrated model is being built to describe the soil-atmosphere-vegetation processes which is linked, firstly, to flow and water quality models that describe the CNP flux transport and transformations from the headwaters to the estuary and, secondly, to biodiversity models. The purpose of the integrated model is to quantify how coupled CNP cycles may respond to environmental change and thereby affect C sequestration, water quality and biodiversity in the future. The team are now in the major phase of data synthesis and model development and are interested in linking with similar studies involving coupled CNP cycles across the atmospheric-terrestrial-freshwater-coastal continuum.

The Multi-Scale Response of Water Quality, Biodiversity and Carbon Sequestration to Coupled Macronutrient Cycling from Source to Sea: TURF2SURF

NASA Astrophysics Data System (ADS)

Wade, Andrew; Emmett, Bridget; Jago, Colin; Stutter, Marc; Biggs, Jeremy

2016-04-01

Turf2Surf is a large, multi-disciplinary project that aims to test the hypothesis that the spatial and temporal patterns of water quality, C sequestration and biodiversity are better explained through the large-scale coupling of C, N and P cycles than by single cycle, single system approaches. To achieve this, a catchment-scale study of the River Conwy (349 km2) in Wales is being done with emphasis on determining when, where and how coupled macronutrient (C, N, P) cycling occurs in the biogeochemical hot-spots of the soils, the riparian zone, instream and in the river-estuarine transition zone. A major integrated measurement programme is now largely complete. New data are being analysed to understand which soil properties have greatest influence on above and below-ground productivity including plant traits and how microbial processing is controlled by stoichiometry and nutrient priming. Within the stream network, new understanding is being produced on the in-river algal and whole ecosystem (metabolic) response to CNP additions and the factors affecting the fate and cycling of organic matter. In the estuary, initial results indicate a subsurface jet is causing stratification and a velocity anomaly has been observed. Both are important in terms of suspended matter transport and floc break-up. An integrated model is being built to describe the soil-atmosphere-vegetation processes which is linked, firstly, to flow and water quality models that describe the CNP flux transport and transformations from the headwaters to the estuary and, secondly, to biodiversity models. The purpose of the integrated model is to quantify how coupled CNP cycles may respond to environmental change and thereby affect C sequestration, water quality and biodiversity in the future. The team are now in the major phase of data synthesis and model development and are interested in linking with similar studies involving coupled CNP cycles across the atmospheric-terrestrial-freshwater-coastal continuum.

The Biogeochemical Role of Antarctic Krill and Baleen Whales in Southern Ocean Nutrient Cycling.

NASA Astrophysics Data System (ADS)

Ratnarajah, L.

2015-12-01

Iron limits primary productivity in large areas of the Southern Ocean. It has been suggested that baleen whales form a crucial part of biogeochemical cycling processes through the consumption of nutrient-rich krill and subsequent defecation, but evidence on their contribution is scarce. We analysed the concentration of iron in Antarctic krill and baleen whale faeces and muscle. Iron concentrations in Antarctic krill were over 1 million times higher, and whale faecal matter were almost 10 million times higher than typical Southern Ocean High Nutrient Low Chlorophyll seawater concentrations. This suggests that Antarctic krill act as a reservoir of in in Southern Ocean surface waters, and that baleen whales play an important role in converting this fixed iron into a liquid form in their faeces. We developed an exploratory model to examine potential contribution of blue, fin and humpback whales to the Southern Ocean iron cycle to explore the effect of the recovery of great whales to historical levels. Our results suggest that pre-exploitation populations of blue whales and, to a lesser extent fin and humpback whales, could have contributed to the more effective recycling of iron in surface waters, resulting in enhanced phytoplankton production. This enhanced primary productivity is estimated to be: 8.3 x 10-5 to 15 g C m-2 yr-1 (blue whales), 7 x 10-5 to 9 g C m-2 yr-1 (fin whales), and 10-5 to 1.7 g C m-2 yr-1 (humpback whales). To put these into perspective, current estimates of primary production in the Southern Ocean from remotely sensed ocean colour are in the order of 57 g C m-2 yr-1 (south of 50°). The high degree of uncertainty around the magnitude of these increases in primary productivity is mainly due to our limited quantitative understanding of key biogeochemical processes including iron content in krill, krill consumption rates by whales, persistence of iron in the photic zone, bioavailability of retained iron, and carbon-to-iron ratio of phytoplankton. We are actively working on addressing these unknowns.

Production and export in a global ocean ecosystem model

NASA Astrophysics Data System (ADS)

Palmer, J. R.; Totterdell, I. J.

2001-05-01

The Hadley Centre Ocean Carbon Cycle (HadOCC) model is a coupled physical-biogeochemical model of the ocean carbon cycle. It features an explicit representation of the marine ecosystem, which is assumed to be limited by nitrogen availability. The biogeochemical compartments are dissolved nutrient, total CO 2, total alkalinity, phytoplankton, zooplankton and detritus. The results of the standard simulation are presented. The annual primary production predicted by the model ( 47.7 Gt C yr -1) compares well to the estimates made by Longhurst et al. (1995, J. Plankton Res., 17, 1245) and Antoine et al. (1996, Global Biogeochem. Cycles, 10, 57). The HadOCC model finds high production in the sub-polar North Pacific and North Atlantic Oceans, and around the Antarctic convergence, and low production in the sub-tropical gyres. However in disagreement with the observations of Longhurst et al. and Antoine et al., the model predicts very high production in the eastern equatorial Pacific Ocean. The export flux of carbon in the model agrees well with data from deep-water sediment traps. In order to examine the factors controlling production in the ocean, additional simulations have been run. A nutrient-restoring simulation confirms that the areas with the highest primary production are those with the greatest nutrient supply. A reduced wind-stress experiment demonstrates that the high production found in the equatorial Pacific is driven by excessive upwelling of nutrient-rich water. Three further simulations show that nutrient supply at high latitudes, and hence production there, is sensitive to the parameters and climatological forcings of the mixed layer sub-model.

Decay and nutrient dynamics of coarse woody debris in the Qinling Mountains, China

PubMed Central

Yuan, Jie; Hou, Lin; Wei, Xin; Shang, Zhengchun; Cheng, Fei; Zhang, Shuoxin

2017-01-01

As an ecological unit, coarse woody debris (CWD) plays an essential role in productivity, nutrient cycling, carbon sequestration, community regeneration and biodiversity. However, thus far, the information on quantification the decomposition and nutrient content of CWD in forest ecosystems remains considerably limited. In this study, we conducted a long-term (1996–2013) study on decay and nutrient dynamics of CWD for evaluating accurately the ecological value of CWD on the Huoditang Experimental Forest Farm in the Qinling Mountains, China. The results demonstrated that there was a strong correlation between forest biomass and CWD mass. The single exponential decay model well fit the CWD density loss at this site, and as the CWD decomposed, the CWD density decreased significantly. Annual temperature and precipitation were all significantly correlated with the annual mass decay rate. The K contents and the C/N ratio of the CWD decreased as the CWD decayed, but the C, N, P, Ca and Mg contents increased. We observed a significant CWD decay effect on the soil C, N and Mg contents, especially the soil C content. The soil N, P, K, Ca and Mg contents exhibited large fluctuations, but the variation had no obvious regularity and changed with different decay times. The results showed that CWD was a critical component of nutrient cycling in forest ecosystems. Further research is needed to determine the effect of diameter, plant tissue components, secondary wood compounds, and decomposer organisms on the CWD decay rates in the Qinling Mountains, which will be beneficial to clarifying the role of CWD in carbon cycles of forest ecosystems. PMID:28384317

Sub-soil microbial activity under rotational cotton crops in Australia

NASA Astrophysics Data System (ADS)

Polain, Katherine; Knox, Oliver; Wilson, Brian; Pereg, Lily

2016-04-01

Soil microbial communities contribute significantly to soil organic matter formation, stabilisation and destabilisation, through nutrient cycling and biodegradation. The majority of soil microbial research examines the processes occurring in the top 0 cm to 30 cm of the soil, where organic nutrients are easily accessible. In soils such as Vertosols, the high clay content causes swelling and cracking. When soil cracking is coupled with rain or an irrigation event, a flush of organic nutrients can move down the soil profile, becoming available for subsoil microbial community use and potentially making a significant contribution to nutrient cycling and biodegradation in soils. At present, the mechanisms and rates of soil nutrient turnover (such as carbon and nitrogen) at depth under cotton rotations are mostly speculative and the process-response relationships remain unclear, although they are undoubtedly underpinned by microbial activity. Our research aims to determine the contribution and role of soil microbiota to the accumulation, cycling and mineralisation of carbon and nitrogen through the whole root profile under continuous cotton (Gossypium hirsutum) and cotton-maize rotations in regional New South Wales, Australia. Through seasonal work, we have established both baseline and potential microbial activity rates from 0 cm to 100 cm down the Vertosol profile, using respiration and colourimetric methods. Further whole soil profile analyses will include determination of microbial biomass and isotopic carbon signatures using phospholipid fatty acid (PLFA) methodology, identification of microbial communities (sequencing) and novel experiments to investigate potential rates of nitrogen mineralisation and quantification of associated genes. Our preliminary observations and the hypotheses tested in this three-year study will be presented.

Nitrogen and the Baltic Sea: managing nitrogen in relation to phosphorus.

PubMed

Elmgren, R; Larsson, U

2001-10-26

The Baltic is a large, brackish sea (4 x 10(5) km2) extending from 54N to approximately 66N, with a fourfold larger drainage area (population 8 x 10(7). Surface salinity (2 to 8 PSU) and hence biodiversity is low. In the last century, annual nutrient loads increased to 10(6) metric tons N and 5 x 10(4) ton P. Eutrophication is evident in the N-limited south, where cyanobacteria fix 2 to 4 x 10(5) ton N each summer, Secchi depths have been halved, and O2-deficient bottom areas have spread. Production remains low in the P-limited north. In nutrient-enriched coastal areas, phytoplankton blooms, toxic at times, and filamentous macroalgae reduce amenity values. Loads need to be reduced of both N, to reduce production, and P, to limit N-fixing cyanobacterial blooms. When large N-load reductions have been achieved locally, algal biomass has declined. So far, P loads have been reduced more than N loads. If this continues, a P-limited Baltic proper may result, very different from previous N-limited conditions. Reaching the management goal of halved anthropogenic N and P loads at minimum cost will require better understanding of biogeochemical nutrient cycles, economic evaluation of proposed measures, and improved stakeholder participation.

Ancient Soils in a Sunburnt Country: Nutrient and Carbon Distributions in an Australian Dryland River System

NASA Astrophysics Data System (ADS)

McIntyre, R. E.; Grierson, P. F.; Adams, M. A.

2005-05-01

Riparian systems are hotspots in dryland landscapes for nutrient supply and transformation. Biogeochemical fluxes in riparian systems are closely coupled to hydrological flowpaths, which, in dryland regions, are characterised by catastrophic flooding and long periods of erratic or no flow. Re-wetting of soils stimulates soil microbial processes that drive mineralization of nutrients necessary for plant growth. We present here the first data of a 3-year research project investigating biogeochemical processes in riparian systems in the semi-arid Pilbara region of Western Australia. Spatial patterns of nitrogen, phosphorus and carbon were closely related to topographic zone (across floodplain and channels) and vegetation type. NO3- and PCi concentrations were four-fold higher in channel, bank and riparian soils than in soils of floodplain and riparian-floodplain transition zones. Nitrogen distribution was highly heterogeneous in riparian soils (NO3- CV=102%, NH4+ CV=84%) while phosphorus was particularly heterogeneous in floodplain soils (PCi CV=153%, PCo CV=266%), in comparison to other zones. Phospholipid fatty acid (PLFA) and enzymatic profiles will be used to assess microbial functional groups, combined with mineralisation experiments and stable isotope studies (15N and 13C). These data will improve understanding of biogeochemical cycling in dryland riparian systems, and contribute to improved regional management of water resources.

Direct versus indirect climate controls on Holocene diatom assemblages in a sub-tropical deep, alpine lake (Lugu Hu, Yunnan, SW China)

NASA Astrophysics Data System (ADS)

Wang, Qian; Yang, Xiangdong; Anderson, Nicholas John; Dong, Xuhui

2016-07-01

The reconstruction of Holocene environmental changes in lakes on the plateau region of southwest China provides an understanding of how these ecosystems may respond to climate change. Fossil diatom assemblages were investigated from an 11,000-year lake sediment core from a deep, alpine lake (Lugu Hu) in southwest China, an area strongly influenced by the southwest (or the Indian) summer monsoon. Changes in diatom assemblage composition, notably the abundance of the two dominant planktonic species, Cyclotella rhomboideo-elliptica and Cyclostephanos dubius, reflect the effects of climate variability on nutrient dynamics, mediated via thermal stratification (internal nutrient cycling) and catchment-vegetation processes. Statistical analyses of the climate-diatom interactions highlight the strong effect of changing orbitally-induced solar radiation during the Holocene, presumably via its effect on the lake's thermal budget. In a partial redundancy analysis, climate (solar insolation) and proxies reflecting catchment process (pollen percentages, C/N ratio) were the most important drivers of diatom ecological change, showing the strong effects of climate-catchment-vegetation interactions on lake functioning. This diatom record reflects long-term ontogeny of the lake-catchment ecosystem and suggests that climatic changes (both temperature and precipitation) impact lake ecology indirectly through shifts in thermal stratification and catchment nutrient exports.

Tampa Bay Water Clarity Model (TBWCM): As a Predictive Tool

EPA Science Inventory

The Tampa Bay Water Clarity Model was developed as a predictive tool for estimating the impact of changing nutrient loads on water clarity as measured by secchi depth. The model combines a physical mixing model with an irradiance model and nutrient cycling model. A 10 segment bi...

TRANSLOCATION OF NUTRIENTS BY FRESHWATER MUSSELS – ALTERATION OF ECOSYSTEM AND COMMUNITY PROCESSES

EPA Science Inventory

Nutrient demand and availability is a major driver of ecosystem processes. We examined the impact of freshwater mussels, a highly imperiled faunal group, on nitrogen (N) and phosphorus (P) cycling and storage in three Oklahoma streams. We found that filter-feeding by freshwater m...

The effect of fire on soil properties

Treesearch

Leonard F. DeBano

1991-01-01

Fire affects nutrient cycling and the physical, chemical, and biological properties of soils occupied by western montane forests. Combustion of litter and soil organic matter (OM) increases the availability of some nutrients, although others are volatilized (for example, N, P, S). Soil OM loss also affects cation exchange capacity, organic chelation, aggregate...

Influence of catchment land cover on stoichiometry and stable isotope compositions of basal resources and macroinvertebrate consumers in headwater streams

EPA Science Inventory

Anthropogenic land use affects aquatic landscapes. For example, landscape-level conversion to urban or agricultural land can heavily influence nutrient cycles in headwater streams via increased nutrient loading and altered hydrologic patterns. Recent studies in headwater streams ...

Impact of climate change and climate anomalies on hydrologic and biogeochemical processes in the Chesapeake Bay Watershed

USDA-ARS?s Scientific Manuscript database

Diffuse nutrient pollution from agricultural landscapes is a priority water quality concern and the cause of mitigation activities worldwide. Climate change and climate variability impact hydrology, nutrient cycling, and ultimately water quality, which can complicate mitigation measures. Climate cha...

Do Nutrient Limitation Patterns Shift from Nitrogen Toward Phosphorus with Increasing Nitrogen Deposition Across the Northeastern United States?

EPA Science Inventory

Atmospheric nitrogen (N) deposition is altering biogeochemical cycling in forests and interconnected lakes of the northeastern US, and may shift nutrient limitation from N toward other essential elements, such as phosphorus (P). Whether this shift is occurring relative to N depos...

Antarctic Ocean Nutrient Conditions During the Last Two Glacial Cycles

NASA Astrophysics Data System (ADS)

Studer, A.; Sigman, D. M.; Martinez-Garcia, A.; Benz, V.; Winckler, G.; Kuhn, G.; Esper, O.; Lamy, F.; Jaccard, S.; Wacker, L.; Oleynik, S.; Gersonde, R.; Haug, G. H.

2014-12-01

The high concentration of the major nutrients nitrate and phosphate in the Antarctic Zone of the Southern Ocean dictates the nature of Southern Ocean ecosystems and permits these nutrients to be carried from the deep ocean into the nutrient-limited low latitudes. Incomplete nutrient consumption in the Antarctic also allows the leakage of deeply sequestered carbon dioxide (CO2) back to the atmosphere, and changes in this leakage may have driven glacial/interglacial cycles in atmospheric CO2. In a sediment core from the Pacific sector of the Antarctic Ocean, we report diatom-bound N isotope (δ15Ndb) records for total recoverable diatoms and two assemblages of diatom species. These data indicate tight coupling between the degree of nitrate consumption and Antarctic climate across the last two glacial cycles, with δ15Ndb (and thus the degree of nitrate consumption) increasing at each major Antarctic cooling event. Measurements in the same sediment core indicate that export production was reduced during ice ages, pointing to an ice age reduction in the supply of deep ocean-sourced nitrate to the Antarctic Ocean surface. The reduced export production of peak ice ages also implies a weaker winter-to-summer decline (i.e. reduced seasonality) in mixed layer nitrate concentration, providing a plausible explanation for an observed reduction in the inter-assemblage δ15Ndb difference during these coldest times. Despite the weak summertime productivity, the reduction in wintertime nitrate supply from deep waters left the Antarctic mixed layer with a low nitrate concentration, and this wintertime change also would have reduced the outgassing of CO2. Relief of light limitation fails to explain the intermediate degree of nitrate consumption that characterizes early glacial conditions, as improved light limitation coincident with reduced nitrate supply would drive nitrate consumption to completion. Thus, the data favor iron availability as the dominant control on annual Antarctic Ocean export production over glacial cycles.

Soil nutrient availability and reproductive effort drive patterns in nutrient resorption in Pentachlethra macroloba

Treesearch

K. L. Tully; Tana Wood; A. M. Schwantes; D. Lawrence

2013-01-01

The removal of nutrients from senescing tissues, nutrient resorption, is a key strategy for conserving nutrients in plants. However, our understanding of what drives patterns of nutrient resorption in tropical trees is limited. We examined the effects of nutrient sources (stand-level and tree-level soil fertility) and sinks (reproductive effort) on nitrogen (N) and...

Plant–herbivore–decomposer stoichiometric mismatches and nutrient cycling in ecosystems

PubMed Central

Cherif, Mehdi; Loreau, Michel

2013-01-01

Plant stoichiometry is thought to have a major influence on how herbivores affect nutrient availability in ecosystems. Most conceptual models predict that plants with high nutrient contents increase nutrient excretion by herbivores, in turn raising nutrient availability. To test this hypothesis, we built a stoichiometrically explicit model that includes a simple but thorough description of the processes of herbivory and decomposition. Our results challenge traditional views of herbivore impacts on nutrient availability in many ways. They show that the relationship between plant nutrient content and the impact of herbivores predicted by conceptual models holds only at high plant nutrient contents. At low plant nutrient contents, the impact of herbivores is mediated by the mineralization/immobilization of nutrients by decomposers and by the type of resource limiting the growth of decomposers. Both parameters are functions of the mismatch between plant and decomposer stoichiometries. Our work provides new predictions about the impacts of herbivores on ecosystem fertility that depend on critical interactions between plant, herbivore and decomposer stoichiometries in ecosystems. PMID:23303537

Carbon dynamics of contrasting agricultural practices

NASA Astrophysics Data System (ADS)

Ghee, Claire; Hallett, Paul; Neilson, Roy; Robinson, David; Paterson, Eric

2013-04-01

Application of organic amendments can improve soil quality and provide crop nutrients. To optimise these agricultural benefits from organic applications, the capacity of microbe-driven nutrient and carbon cycling must be understood and exploited. Consideration is therefore required of the complex interactions between the rhizosphere, microbial biomass and organic amendment. We hypothesise that the labile C present in root exudates of plants increases the mineralisation of organic matter in soil, constituting a mechanism to promote nutrient acquisition. This mechanism is known as the 'priming effect', but is poorly understood in the context of agricultural carbon and nutrient management. Field data from the Centre of Sustainable Cropping (CSC) research platform (Dundee, Scotland, UK) are utilised to build an understanding of soil C and N fluxes between contrasting agricultural practices. The field site uses a split-plot design to compare (i) compost amended soils with reduced tillage and chemical inputs and (ii) conventionally managed soils, reflective of current UK commercial arable practice. Significant differences (p= <0.001) were identified between compost amended and conventionally managed soils at field-scale with respect to soil microbial biomass (SMB), total organic carbon (TOC) and mineral nitrogen. Investigation into the priming effect within compost amended soils was subsequently undertaken under laboratory conditions. Stable isotope analysis and measurements of soil biotic parameters were used to quantify priming resulting from Spring Barley (Hordeum vulgare cv. Optic) cultivation for (i) unamended and (ii) municipal compost incorporated soils. Compost treatments comprised amendments of 25, 50 and 150 t/Ha and planted soils were compared with unplanted controls. Soil mesocosms were maintained under controlled environmental conditions within labelling chambers supplied continuously with 13C-depleted CO2. Throughout a 41-day incubation period, soil CO2 efflux and dissolved organic carbon (DOC) was collected for quantification and 13C analysis. Following the incubation period, soils and plant material were harvested for nitrogen, carbon and δ13C analyses. Isotopic analyses allowed partitioning of the contributions of plant- and soil-derived organic matter sources to SMB, DOC and soil respiration. The results demonstrate a strong influence of plant-microbe interactions in mediating the mobilisation and mineralisation of stabilised organic fractions in soil, constituting a significant feedback to crop productivity through increased nutrient cycling.

Contrasts between channels and backwaters in a large, floodplain river: Testing our understanding of nutrient cycling, phytoplankton abundance, and suspended solids dynamics

USGS Publications Warehouse

Houser, Jeff N.

2016-01-01

In floodplain rivers, variability in hydraulic connectivity interacts with biogeochemistry to determine the distribution of suspended and dissolved substances. Nutrient, chlorophyll a, and suspended solids data spanning longitudinal (5 study reaches across 1300 river km), lateral (main channel and backwaters), and temporal (1994–2011) gradients in the Upper Mississippi River (UMR) were used to examine the extent to which observed differences between the main channel and backwaters were consistent with expectations based on current understanding of biogeochemical processes in large rivers. For N and P, the results largely conformed to expectations. N concentrations were greater in the main channel than in the backwaters in 82 to 96% of the observations across river reaches. Maximum TP concentrations generally occurred in backwaters during summer, when backwater TP often exceeded that of the main channel. Flux of P from sediments may be a substantial source of water-column P in UMR backwaters in summer. The data for suspended solids and chlorophyll a suggest that some refinements are needed of our understanding of ecosystem processes in large rivers. During low-discharge conditions, concentrations of inorganic suspended solids often were greater in backwaters than in the main channel, suggesting the importance of sediment resuspension. Chlorophyll a concentrations were usually greater in backwaters than in the main channel, but exceptions indicate that phytoplankton abundance in the main channel of the UMR can sometimes be greater than is typically expected for large rivers.

Architecture and inherent robustness of a bacterial cell-cycle control system.

PubMed

Shen, Xiling; Collier, Justine; Dill, David; Shapiro, Lucy; Horowitz, Mark; McAdams, Harley H

2008-08-12

A closed-loop control system drives progression of the coupled stalked and swarmer cell cycles of the bacterium Caulobacter crescentus in a near-mechanical step-like fashion. The cell-cycle control has a cyclical genetic circuit composed of four regulatory proteins with tight coupling to processive chromosome replication and cell division subsystems. We report a hybrid simulation of the coupled cell-cycle control system, including asymmetric cell division and responses to external starvation signals, that replicates mRNA and protein concentration patterns and is consistent with observed mutant phenotypes. An asynchronous sequential digital circuit model equivalent to the validated simulation model was created. Formal model-checking analysis of the digital circuit showed that the cell-cycle control is robust to intrinsic stochastic variations in reaction rates and nutrient supply, and that it reliably stops and restarts to accommodate nutrient starvation. Model checking also showed that mechanisms involving methylation-state changes in regulatory promoter regions during DNA replication increase the robustness of the cell-cycle control. The hybrid cell-cycle simulation implementation is inherently extensible and provides a promising approach for development of whole-cell behavioral models that can replicate the observed functionality of the cell and its responses to changing environmental conditions.

Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle.

PubMed

Silveira, Cynthia B; Gregoracci, Gustavo B; Coutinho, Felipe H; Silva, Genivaldo G Z; Haggerty, John M; de Oliveira, Louisi S; Cabral, Anderson S; Rezende, Carlos E; Thompson, Cristiane C; Francini-Filho, Ronaldo B; Edwards, Robert A; Dinsdale, Elizabeth A; Thompson, Fabiano L

2017-01-01

Corals display circadian physiological cycles, changing from autotrophy during the day to heterotrophy during the night. Such physiological transition offers distinct environments to the microbial community associated with corals: an oxygen-rich environment during daylight hours and an oxygen-depleted environment during the night. Most studies of coral reef microbes have been performed on samples taken during the day, representing a bias in the understanding of the composition and function of these communities. We hypothesized that coral circadian physiology alters the composition and function of microbial communities in reef boundary layers. Here, we analyzed microbial communities associated with the momentum boundary layer (MBL) of the Brazilian endemic reef coral Mussismilia braziliensis during a diurnal cycle, and compared them to the water column. We determined microbial abundance and nutrient concentration in samples taken within a few centimeters of the coral's surface every 6 h for 48 h, and sequenced microbial metagenomes from a subset of the samples. We found that dominant taxa and functions in the coral MBL community were stable over the time scale of our sampling, with no significant shifts between night and day samples. Interestingly, the two water column metagenomes sampled 1 m above the corals were also very similar to the MBL metagenomes. When all samples were analyzed together, nutrient concentration significantly explained 40% of the taxonomic dissimilarity among dominant genera in the community. Functional profiles were highly homogenous and not significantly predicted by any environmental variables measured. Our data indicated that water flow may overrule the effects of coral physiology in the MBL bacterial community, at the scale of centimeters, and suggested that sampling resolution at the scale of millimeters may be necessary to address diurnal variation in community composition.

Hydrologic influence on redox dynamics in estuarine environments

NASA Astrophysics Data System (ADS)

Michael, H. A.; Kim, K. H.; Guimond, J. A.; Heiss, J.; Ullman, W. J.; Seyfferth, A.

2017-12-01

Redox conditions in coastal aquifers control reactions that impact nutrient cycling, contaminant release, and carbon budgets, with implications for water resources and ecosystem health. Hydrologic changes can shift redox boundaries and inputs of reactants, especially in dynamic coastal systems subject to fluctuations on tidal, lunar, and longer timescales. We present two examples of redox shifts in estuarine systems in Delaware, USA: a beach aquifer and a saltmarsh. Beach aquifers are biogeochemical hot spots due to mixing between fresh groundwater and infiltrating seawater. At Cape Henlopen, DE, geochemical measurements identified reactions in the intertidal aquifer that include cycling of carbon, nitrogen, iron, and sulfur. Measurements and modeling illustrate that redox potential as well as the locations of redox reactions shift on tidal to seasonal timescales and in response to changing beach and aquifer properties, impacting overall rates of reactions such as denitrification that reduces N loads to coastal waters. In the St. Jones National Estuarine Research Reserve, tidal fluctuations in channels cause periodic groundwater-surface water exchange, water table movement, and intermittent flooding that varies spatially across the saltmarsh. These changes create shifts in redox potential that are greatest near channels and in the top 20 cm of sediments. The magnitude of redox change depends on hydrologic setting (near channels or in marsh interior), hydrologic conditions (tidal stage, seasonal shifts), as well as prevalence of macropores created by crab burrows that change seasonally with crab activity. These shifts correspond to changes in porewater chemistry that have implications for nutrient cycling and carbon export to the ocean. Understanding hydrologic influence on redox geochemistry is critical for predicting how these systems and their ecosystem services may change in the future in response to anthropogenic and climate change.

Effects of Increased Nitrogen Availability on C and N Cycles in Tropical Forests: A Meta-Analysis.

PubMed

Bejarano-Castillo, Marylin; Campo, Julio; Roa-Fuentes, Lilia L

2015-01-01

Atmospheric N deposition is predicted to increase four times over its current status in tropical forests by 2030. Our ability to understand the effects of N enrichment on C and N cycles is being challenged by the large heterogeneity of the tropical forest biome. The specific response will depend on the forest's nutrient status; however, few studies of N addition appear to incorporate the nutrient status in tropical forests, possibly due to difficulties in explaining how this status is maintained. We used a meta-analysis to explore the consequences of the N enrichment on C and N cycles in tropical montane and lowland forests. We tracked changes in aboveground and belowground plant C and N and in mineral soil in response to N addition. We found an increasing trend of plant biomass in montane forests, but not in lowland forests, as well as a greater increase in NO emission in montane forest compared with lowland forest. The N2O and NO emission increase in both forest; however, the N2O increase in lowland forest was significantly even at first time N addition. The NO emission increase showed be greater at first term compared with long term N addition. Moreover, the increase in total soil N, ammonium, microbial N, and dissolved N concentration under N enrichment indicates a rich N status of lowland forests. The available evidence of N addition experiments shows that the lowland forest is richer in N than montane forests. Finally, the greater increase in N leaching and N gas emission highlights the importance of study the N deposition effect on the global climate change.

Effects of Increased Nitrogen Availability on C and N Cycles in Tropical Forests: A Meta-Analysis

PubMed Central

2015-01-01

Atmospheric N deposition is predicted to increase four times over its current status in tropical forests by 2030. Our ability to understand the effects of N enrichment on C and N cycles is being challenged by the large heterogeneity of the tropical forest biome. The specific response will depend on the forest’s nutrient status; however, few studies of N addition appear to incorporate the nutrient status in tropical forests, possibly due to difficulties in explaining how this status is maintained. We used a meta-analysis to explore the consequences of the N enrichment on C and N cycles in tropical montane and lowland forests. We tracked changes in aboveground and belowground plant C and N and in mineral soil in response to N addition. We found an increasing trend of plant biomass in montane forests, but not in lowland forests, as well as a greater increase in NO emission in montane forest compared with lowland forest. The N2O and NO emission increase in both forest; however, the N2O increase in lowland forest was significantly even at first time N addition. The NO emission increase showed be greater at first term compared with long term N addition. Moreover, the increase in total soil N, ammonium, microbial N, and dissolved N concentration under N enrichment indicates a rich N status of lowland forests. The available evidence of N addition experiments shows that the lowland forest is richer in N than montane forests. Finally, the greater increase in N leaching and N gas emission highlights the importance of study the N deposition effect on the global climate change. PMID:26633681

Carbon Sinks in a Changing Climate: Relative Buoyancy and Sinking Potentials of Various Antarctic Phytoplankton and Ice Algae

NASA Astrophysics Data System (ADS)

Nirmel, S.; Selz, V.

2016-12-01

Polar phytoplankton play instrumental roles in global biogeochemical cycles, sometimes serving as massive carbon sinks via the biological pump. In addition to phytoplankton, sea ice supports a significant amount of ice algae, the essential primary producers for the ecosystem in winter and early spring. While sea ice habitat declines on regional scales, the fate of sea ice algae post-ice melt remains relatively unknown, despite its importance in understanding how the biological pump might be affected by sea ice loss. Through a series of settling column experiments on the icebreaker Nathaniel B. Palmer, we aimed to address the question: What controls the fate of the carbon-rich ice algae across the Western Antarctic Peninsula (WAP) during ice melt? We focused on whether species composition affects the sinking potential of ice algal communities. Using FlowCAM imagery, we classified samples collected from the buoyant, neutral, and negatively buoyant portions of the settling columns into genus-level taxonomic classes. We used image parameters and geometric shape equations to calculate the biovolume of each taxonomic group. We further explored relationships between taxa-specific sinking potentials, environmental parameters (temperature and nutrients), and physiological properties of associated algal communities (as described by Fast Rate Repetition fluorometry). Results indicate that colonial Phaeocystis antarctica tends to dominate lower regions of the settling column. Moreover, we observe strong correlations between geographic location and both nutrients and phytoplankton physiology. We found that these three factors are indeed related to taxa-specific buoyancy and sinking indices. An understanding of these relationships sheds more light on the role P. antarctica (a carbon-rich bloom-forming genus) plays in the biological pump; higher sinking rates suggest greater carbon export to depth, while lower sinking rates increase the likelihood of carbon being respired back into the environment by heterotrophs at the surface. This study advances our knowledge on the roles sea ice algae and phytoplankton play in biogeochemical cycles and offers a glimpse into how such cycles may function in a changing climate.

Understanding soil health by capitalizing on long-term field studies

NASA Astrophysics Data System (ADS)

Tavakkoli, Ehsan; Wang, Zhe; VanZweieten, Lukas; Rose, Michael

2017-04-01

Microbial biodiversity in Australian agricultural soils is of paramount importance as it plays a critical role in regulating soil health, plant productivity, and the cycling of carbon, nitrogen, and other nutrients. Agricultural practices strongly affect soil microbial communities by changing the physical and chemical characteristics of the soil in which microorganisms live, thereby affecting their abundance, diversity, and activity. Despite its importance, the specific responses of various microbial groups to changing environmental conditions (e.g. increased/decreased carbon in response to land management) in agricultural soils are not well understood. This knowledge gap is largely due to previous methodological limitations that, until recently, did not allow microbial diversity and functioning to be meaningfully investigated on large numbers of samples. We sampled soils from a field trial on the effect of strategic tillage in no-till systems to examine the potential impact of tillage and stubble management on soil microbial composition. To determine the relative abundance of bacteria and fungi, we used quantitative PCR (qPCR), and to analyze the composition and diversity of the bacterial and fungal communities, we used bar-coded high-throughput sequencing. Bioinformatics of the sequencing generated data was performed using a previously scripted and tested pipeline, and involved allocation of the relevant sequences to their samples of origin according to the bar-code. In parallel, changes in soil quality and microbial functionality were determined using multi-enzyme activity assay and multiple substrate-induced respiration. The extracellular enzyme activities that were measured include: β-1,4-glucosidase, β-D-cellobiohydrolase, β-Xylosidase, and α-1,4-glucosidase which are all relevant to the C cycle; β-1,4-N-acetylglucosaminidase and L-leucine aminopeptidase which are both relevant to the N cycle associated and associated with protein catabolism. In this presentation, analyses of soil health and functionality in relation to its response to various agronomic practices and implications for C sequestration and nutrient cycling will be discussed.

An approach to monitor food and nutrition from ‘Factory to Fork.’

PubMed Central

Slining, Meghan; Yoon, Emily Ford; Davis, Jessica; Hollingsworth, Bridget; Miles, Donna; Ng, Shu Wen

2014-01-01

Background Accurate, adequate, and timely food and nutrition information is necessary in order to monitor changes in the US food supply and assess their impact on individual dietary intake. Objective Develop an approach that links time-specific purchase and consumption data to provide updated, market representative nutrient information. Data and Methods We utilized household purchase data (Nielsen Homescan, 2007–2008), self-reported dietary intake data [What We Eat in America (WWEIA), 2007–2008], and two sources of nutritional composition data. This factory to fork Crosswalk approach connected each of the items reported to have been obtained from stores from the 2007–2008 cycle of the WWEIA dietary intake survey to corresponding food and beverage products that were purchased by US households during the equivalent time period. Using nutrition composition information and purchase data, an alternate Crosswalk-based nutrient profile for each WWEIA intake code was created weighted by purchase volume of all corresponding items. Mean intakes of daily calories, total sugars, sodium, and saturated fat were estimated. Results Differences were observed in the average daily calories, sodium and total sugars reported consumed from beverages, yogurts and cheeses, depending on whether the FNDDS 4.1 or the alternate nutrient profiles were used. Conclusions The Crosswalk approach augments national nutrition surveys with commercial food and beverage purchases and nutrient databases to capture changes in the US food supply from factory to fork. The Crosswalk provides a comprehensive and representative measurement of the types, amounts, prices, locations and nutrient composition of CPG foods and beverages consumed in the US. This system has potential to be a major step forward in understanding the CPG sector of the US food system and the impacts of the changing food environment on human health. PMID:25441958

Water uptake and nutrient concentrations under a floodplain oak savanna during a non-flood period, lower Cedar River, Iowa

USGS Publications Warehouse

Schilling, K.E.; Jacobson, P.

2009-01-01

Floodplains during non-flood periods are less well documented than when flooding occurs, but non-flood periods offer opportunities to investigate vegetation controls on water and nutrient cycling. In this study, we characterized water uptake and nutrient concentration patterns from 2005 to 2007 under an oak savanna located on the floodplain of the Cedar River in Muscatine County, Iowa. The water table ranged from 0.5 to 2.5 m below ground surface and fluctuated in response to stream stage, plant water demand and rainfall inputs. Applying the White method to diurnal water table fluctuations, daily ET from groundwater averaged more than 3.5 mm/day in June and July and approximately 2 mm/day in May and August. Total annual ET averaged 404 mm for a growing season from mid-May to mid-October. Savanna groundwater concentrations of nitrate-N, ammonium-N, and phosphate-P were very low (mean <0.18, <0.14, <0.08 mg/l, respectively), whereas DOC concentrations were high (7.1 mg/l). Low concentrations of N and P were in contrast to high nutrient concentrations in the nearby Cedar River, where N and P averaged 7.5 mg/ l and 0.13, respectively. In regions dominated by intensive agriculture, study results document valuable ecosystem services for native floodplain ecosystems in reducing watershed-scale nutrient losses and providing an oasis for biological complexity. Improved understanding of the environmental conditions of regionally significant habitats, including major controls on water table elevations and water quality, offers promise for better management aimed at preserving the ecology of these important habitats. Copyright ?? 2009 John Wiley & Sons, Ltd.

Urbanization effects on leaf litter decomposition, foliar nutrient dynamics and aboveground net primary productivity in the subtropics

Treesearch

Heather A. Enloe; B. Graeme Lockaby; Wayne C. Zipperer; Greg L. Somers

2015-01-01

Urbanization can alter nutrient cycling. This research evaluated how urbanization affected nutrient dynamics in the subtropics. We established 17–0.04 ha plots in five different land cover types—slash pine (Pinus elliottii) plantations (n=3), rural natural pine forests (n= 3), rural natural oak forests (n=4), urban pine forests (n=3) and urban oak forests (n=4) in the...

Global riverine N and P transport to ocean increased during the 20th century despite increased retention along the aquatic continuum

NASA Astrophysics Data System (ADS)

Beusen, Arthur H. W.; Bouwman, Alexander F.; Van Beek, Ludovicus P. H.; Mogollón, José M.; Middelburg, Jack J.

2016-04-01

Various human activities - including agriculture, water consumption, river damming, and aquaculture - have intensified over the last century. This has had a major impact on nitrogen (N) and phosphorus (P) cycling in global continental waters. In this study, we use a coupled nutrient-input-hydrology-in-stream nutrient retention model to quantitatively track the changes in the global freshwater N and P cycles over the 20th century. Our results suggest that, during this period, the global nutrient delivery to streams increased from 34 to 64 Tg N yr-1 and from 5 to 9 Tg P yr-1. Furthermore, in-stream retention and removal grew from 14 to 27 Tg N yr-1 and 3 to 5 Tg P yr-1. One of the major causes of increased retention is the growing number of reservoirs, which now account for 24 and 22 % of global N and P retention/removal in freshwater systems, respectively. This increase in nutrient retention could not balance the increase in nutrient delivery to rivers with the consequence that river nutrient transport to the ocean increased from 19 to 37 Tg N yr-1 and from 2 to 4 Tg P yr-1. Human activities have also led to a global increase in the molar N : P ratio in freshwater bodies.

Global riverine N and P transport to ocean increased during the twentieth century despite increased retention along the aquatic continuum

NASA Astrophysics Data System (ADS)

Beusen, A. H. W.; Bouwman, A. F.; Van Beek, L. P. H.; Mogollón, J. M.; Middelburg, J. J.

2015-12-01

Various human activities, including agriculture, water consumption, river damming, and aquaculture, have intensified over the last century. This has had a major impact on nitrogen (N) and phosphorus (P) cycling in global continental waters. In this study, we use a coupled nutrient-input, hydrology, in-stream nutrient retention model to quantitatively track the changes in the global freshwater N and P cycles over the 20th century. Our results suggest that, during this period, the global nutrient delivery to streams increased from 34 to 64 Tg N yr-1 and from 5 to 9 Tg N yr-1. Furthermore, in-stream retention and removal grew from 14 to 27 Tg N yr-1 and 3 to 5 Tg N yr-1. One of the major cause of increased retention is the growing number of reservoirs which now account for 24 and 22 % of global N and P retention/removal in freshwater systems, respectively. This increase in nutrient retention could not balance the increase in nutrient delivery to rivers with the consequence that river nutrient transport to the ocean increased from 19 to 37 Tg N yr-1 and from 2 to 4 Tg N yr-1. Human activities have also led to a global increase in the molar N : P ratio in freshwater bodies.

Nutrient feedbacks to soil heterotrophic nitrogen fixation in forests

USGS Publications Warehouse

Perakis, Steven; Pett-Ridge, Julie C.; Catricala, Christina E.

2017-01-01

Multiple nutrient cycles regulate biological nitrogen (N) fixation in forests, yet long-term feedbacks between N-fixation and coupled element cycles remain largely unexplored. We examined soil nutrients and heterotrophic N-fixation across a gradient of 24 temperate conifer forests shaped by legacies of symbiotic N-fixing trees. We observed positive relationships among mineral soil pools of N, carbon (C), organic molybdenum (Mo), and organic phosphorus (P) across sites, evidence that legacies of symbiotic N-fixing trees can increase the abundance of multiple elements important to heterotrophic N-fixation. Soil N accumulation lowered rates of heterotrophic N-fixation in organic horizons due to both N inhibition of nitrogenase enzymes and declines in soil organic matter quality. Experimental fertilization of organic horizon soil revealed widespread Mo limitation of heterotrophic N-fixation, especially at sites where soil Mo was scarce relative to C. Fertilization also revealed widespread absence of P limitation, consistent with high soil P:Mo ratios. Responses of heterotrophic N-fixation to added Mo (positive) and N (negative) were correlated across sites, evidence that multiple nutrient controls of heterotrophic N-fixation were more common than single-nutrient effects. We propose a conceptual model where symbiotic N-fixation promotes coupled N, C, P, and Mo accumulation in soil, leading to positive feedback that relaxes nutrient limitation of overall N-fixation, though heterotrophic N-fixation is primarily suppressed by strong negative feedback from long-term soil N accumulation.

Microbial mediated retention/transformation of organic and inorganic materials in freshwater and marine ecosystems

EPA Science Inventory

Aquatic ecosystems are globally connected by hydrological and biogeochemical cycles. Microorganisms inhabiting aquatic ecosystems form the basis of food webs, mediate essential element cycles, decompose natural organic matter, transform inorganic nutrients and metals, and degrad...

Wastewater and Saltwater: Studying the Biogeochemistry and Microbial Activity Associated with Wastewater Inputs to San Francisco Bay

NASA Astrophysics Data System (ADS)

Challenor, T.; Menendez, A. D.; Damashek, J.; Francis, C. A.; Casciotti, K. L.

2014-12-01

Nitrification is the process of converting ammonium (NH­­4+) into nitrate (NO3-), and is a crucial step in removing nitrogen (N) from aquatic ecosystems. This process is governed by ammonia-oxidizing bacteria (AOB) and archaea (AOA) that utilize the ammonia monooxygenase gene (amoA). Studying the rates of nitrification and the abundances of ammonia-oxidizing microorganisms in south San Francisco Bay's Artesian Slough, which receives treated effluent from the massive San Jose-Santa Clara Regional Wastewater Facility, are important for understanding the cycling of nutrients in this small but complex estuary. Wastewater inputs can have negative environmental impacts, such as the release of nitrous oxide, a byproduct of nitrification and a powerful greenhouse gas. Nutrient inputs can also increase productivity and sometimes lead to oxygen depletion. Assessing the relative abundance and diversity of AOA and AOB, along with measuring nitrification rates gives vital information about the biology and biogeochemistry of this important N-cycling process. To calculate nitrification rates, water samples were spiked with 15N-labeled ammonium and incubated in triplicate for 24 hours. Four time-points were extracted across the incubation and the "denitrifier" method was used to measure the isotopic ratio of nitrate in the samples over time. In order to determine relative ratios of AOB to AOA, DNA was extracted from water samples and used in clade-specific amoA PCR assays. Nitrification rates were detectable in all locations sampled and were higher than in other regions of the bay, as were concentrations of nitrate and ammonium. Rates were highest in the regions of Artesian Slough most directly affected by wastewater effluent. AOB vastly outnumbered AOA, which is consistent with other studies showing that AOB prefer high nutrient environments. AOB diversity includes clades of Nitrosospira and Nitrosomonas prevalent in estuarine settings. Many of the sequenced genes are related to estuarine sediment found at other sites in the San Francisco Bay as well as the Chesapeake Bay, China East Sea, and Pearl River Estuary. Our data provide evidence for the path that N takes once entering the estuary and also further characterize the behavior of nitrifying microorganisms in extremely high-nutrient aquatic environments.

Seasonal Belowground Ecosystem and Eco-enzymatic Responses to Soil pH and Phosphorus Availability in Temperate Hardwood Forests

NASA Astrophysics Data System (ADS)

Smemo, K. A.; Deforest, J. L.; Petersen, S. L.; Burke, D.; Hewins, C.; Kluber, L. A.; Kyker, S. R.

2013-12-01

Atmospheric acid deposition can increase phosphorus (P) limitation in temperate hardwood forests by increasing N availability, and therefore P demand, and/or by decreasing pH and occluding inorganic P. However, only recently have studies demonstrated that P limitation can occur in temperate forests and very little is known about the temporal aspects of P dynamics in acidic forest soils and how seasonal shifts in nutrient availability and demand influence microbial investment in extracellular enzymes. The objectives of this study were to investigate how P availability and soil pH influence seasonal patterns of nutrient cycling and soil microbial activity in hardwood forests that experience chronic acid deposition. We experimentally manipulated soil pH, P, or both for three years and examined soil treatment responses in fall, winter, spring, early summer, and late summer. We found that site (glaciated versus unglaciated) and treatment had the most significant influence on nutrient pools and cycling. In general, nutrient pools were higher in glaciated soils than unglaciated for measured nutrients, including total C and N (2-3 times higher), extractable inorganic nitrogen, and readily available P. Treatment had no impact on total C and N pools in either region, but did affect other measured nutrients such as ammonium, which was greatest in the elevated pH treatment for both sites. As expected, readily available P pools were highest in the elevated P treatments (3 fold increase in both sites), but raising pH decreased available P pools in the glaciated site. Raising soil pH increased both net N mineralization rates and net P mineralization rates, regardless of site. Nitrification responses were complex, but we observed an overall significant nitrification increase under elevated pH, particularly in the growing season. Extracellular enzyme activity showed more seasonal patterns than site and treatment effects, exhibiting significant growing season activity reductions for all enzymes measured. Phosphatase enzymes did not respond to our treatments and were generally greatest in the unglaciated soils, particularly in winter and spring. Enzyme stoichiometric relationships revealed that soil microbial populations in the glaciated site were consistently less P and N-limited than unglaciated sites but this difference was less pronounced during the growing season. The trajectory of nutrient limitation in response to soil pH and P availability was highly variable, but we observed that enzyme ratios in the early summer were particularly shifted relative to other seasons suggesting that both sites were increasingly P and N-limited during this period. Overall, our results suggest that ecosystem and microbial responses to soil pH and P availability vary with both season and site history and that more spatially and temporally explicit observations are needed to improve our understanding of ecosystem acidification, nutrient limitation, and the cost-benefit relationships of microbial investments in extracellular enzymes.

Energy-neutral sustainable nutrient recovery incorporated with the wastewater purification process in an enlarged microbial nutrient recovery cell

NASA Astrophysics Data System (ADS)

Sun, Dongya; Gao, Yifan; Hou, Dianxun; Zuo, Kuichang; Chen, Xi; Liang, Peng; Zhang, Xiaoyuan; Ren, Zhiyong Jason; Huang, Xia

2018-04-01

Recovery of nutrient resources from the wastewater is now an inevitable strategy to maintain the supply of both nutrient and water for our huge population. While the intensive energy consumption in conventional nutrient recovery technologies still remained as the bottleneck towards the sustainable nutrient recycle. This study proposed an enlarged microbial nutrient recovery cell (EMNRC) which was powered by the energy contained in wastewater and achieved multi-cycle nutrient recovery incorporated with in situ wastewater treatment. With the optimal recovery solution of 3 g/L NaCl and the optimal volume ratio of wastewater to recovery solution of 10:1, >89% of phosphorus and >62% of ammonium nitrogen were recovered into struvite. An extremely low water input ratio of <1% was required to obtain the recovered fertilizer and the purified water. It was proved the EMNRC system was a promising technology which could utilize the chemical energy contained in wastewater itself and energy-neutrally recover nutrient during the continuous wastewater purification process.

Controls of nitrogen cycling evaluated along a well-characterized climate gradient.

PubMed

von Sperber, Christian; Chadwick, Oliver A; Casciotti, Karen L; Peay, Kabir G; Francis, Christopher A; Kim, Amy E; Vitousek, Peter M

2017-04-01

The supply of nitrogen (N) constrains primary productivity in many ecosystems, raising the question "what controls the availability and cycling of N"? As a step toward answering this question, we evaluated N cycling processes and aspects of their regulation on a climate gradient on Kohala Volcano, Hawaii, USA. The gradient extends from sites receiving <300 mm/yr of rain to those receiving >3,000 mm/yr, and the pedology and dynamics of rock-derived nutrients in soils on the gradient are well understood. In particular, there is a soil process domain at intermediate rainfall within which ongoing weathering and biological uplift have enriched total and available pools of rock-derived nutrients substantially; sites at higher rainfall than this domain are acid and infertile as a consequence of depletion of rock-derived nutrients, while sites at lower rainfall are unproductive and subject to wind erosion. We found elevated rates of potential net N mineralization in the domain where rock-derived nutrients are enriched. Higher-rainfall sites have low rates of potential net N mineralization and high rates of microbial N immobilization, despite relatively high rates of gross N mineralization. Lower-rainfall sites have moderately low potential net N mineralization, relatively low rates of gross N mineralization, and rates of microbial N immobilization sufficient to sequester almost all the mineral N produced. Bulk soil δ 15 N also varied along the gradient, from +4‰ at high rainfall sites to +14‰ at low rainfall sites, indicating differences in the sources and dynamics of soil N. Our analysis shows that there is a strong association between N cycling and soil process domains that are defined using soil characteristics independent of N along this gradient, and that short-term controls of N cycling can be understood in terms of the supply of and demand for N. © 2017 by the Ecological Society of America.

Exploring the Sulfur Nutrient Cycle Using the Winogradsky Column

ERIC Educational Resources Information Center

Rogan, Brian; Lemke, Michael; Levandowsky, Michael; Gorrell, Thomas

2005-01-01

The Winogradsky column demonstrates how the metabolic diversity of prokaryotes transforms sulfur to different forms with varying redox states and hence, supplies nutrients and/or energy to the organism. The Winogardsky column is an excellent way to show that not all bacteria are pathogens and they have an important role in the geochemical cycling…

Advancing the use of minirhizotrons in wetlands

Treesearch

C. M. Iversen; M. T. Murphy; M. F. Allen; J. Childs; D. M. Eissenstat; E.A. Lilleskov; T. M. Sarjala; V. L. Sloan; P. F. Sullivan

2012-01-01

Background. Wetlands store a substantial amount of carbon (C) in deep soil organic matter deposits, and play an important role in global fluxes of carbon dioxide and methane. Fine roots (i.e., ephemeral roots that are active in water and nutrient uptake) are recognized as important components of biogeochemical cycles in nutrient-limited wetland ecosystems. However,...

Consistent nutrient storage and supply mediated by diverse fish communities in coral reef ecosystems.

PubMed

Allgeier, Jacob E; Layman, Craig A; Mumby, Peter J; Rosemond, Amy D

2014-08-01

Corals thrive in low nutrient environments and the conservation of these globally imperiled ecosystems is largely dependent on mitigating the effects of anthropogenic nutrient enrichment. However, to better understand the implications of anthropogenic nutrients requires a heightened understanding of baseline nutrient dynamics within these ecosystems. Here, we provide a novel perspective on coral reef nutrient dynamics by examining the role of fish communities in the supply and storage of nitrogen (N) and phosphorus (P). We quantified fish-mediated nutrient storage and supply for 144 species and modeled these data onto 172 fish communities (71 729 individual fish), in four types of coral reefs, as well as seagrass and mangrove ecosystems, throughout the Northern Antilles. Fish communities supplied and stored large quantities of nutrients, with rates varying among ecosystem types. The size structure and diversity of the fish communities best predicted N and P supply and storage and N : P supply, suggesting that alterations to fish communities (e.g., overfishing) will have important implications for nutrient dynamics in these systems. The stoichiometric ratio (N : P) for storage in fish mass (~8 : 1) and supply (~20 : 1) was notably consistent across the four coral reef types (but not seagrass or mangrove ecosystems). Published nutrient enrichment studies on corals show that deviations from this N : P supply ratio may be associated with poor coral fitness, providing qualitative support for the hypothesis that corals and their symbionts may be adapted to specific ratios of nutrient supply. Consumer nutrient stoichiometry provides a baseline from which to better understand nutrient dynamics in coral reef and other coastal ecosystems, information that is greatly needed if we are to implement more effective measures to ensure the future health of the world's oceans. © 2014 John Wiley & Sons Ltd.

Preface [to special section on recent Loch Vale Watershed research

USGS Publications Warehouse

Baron, Jill S.; Williams, Mark W.

2000-01-01

Catchment-scale intensive and extensive research conducted over the last decade shows that our understanding of the biogeochemical and hydrologic processes in subalpine and alpine basins is not yet sufficiently mature to model and predict how biogeochemical transformations and surface water quality will change in response to climatic or human-driven changes in energy, water, and chemicals. A better understanding of these processes is needed for input to decision-making regulatory agencies and federal land managers. In recognition of this problem the National Research Council [1998] has identified as a critical research need an improved understanding of how global change will affect biogeochemical interactions with the hydrologic cycle and biogeochemical controls over the transport of water, nutrients, and materials from land to freshwater ecosystems. Improved knowledge of alpine and subalpine ecosystems is particularly important since high-elevation catchments are very sensitive to small changes in the flux of energy, chemicals, and water. Furthermore, alpine ecosystems may act as early warning indicators for ecosystem changes at lower elevations.

Modelling the formation of necrotic regions in avascular tumours.

PubMed

Tindall, M J; Please, C P; Peddie, M J

2008-01-01

The mechanisms underlying the formation of necrotic regions within avascular tumours are not well understood. In this paper, we examine the relative roles of nutrient deprivation and of cell death, from both the proliferating phase of the cell cycle via apoptosis and from the quiescent phase via necrosis, in changing the structure within multicellular tumour spheroids and particularly the accumulation of dead cell material in the centre. A mathematical model is presented and studied that accounts for nutrient diffusion, changes in cell cycling rates, the two different routes to cell death as well as active motion of cells and passive motion of the dead cell material. In studying the accumulation of dead cell matter we do not distinguish between the route by which each was formed. The resulting mathematical model is examined for a number of scenarios. Results show that in many cases the size of the necrotic core is closely correlated with low levels in nutrient concentration. However, in certain cases, particularly where the rate of necrosis is large, the resulting necrotic core can lead to regions of non-negligible nutrient concentration-dependent upon the mode of cell death.

Role of Litter Turnover in Soil Quality in Tropical Degraded Lands of Colombia

PubMed Central

León, Juan D.; Osorio, Nelson W.

2014-01-01

Land degradation is the result of soil mismanagement that reduces soil productivity and environmental services. An alternative to improve degraded soils through reactivation of biogeochemical nutrient cycles (via litter production and decomposition) is the establishment of active restoration models using new forestry plantations, agroforestry, and silvopastoral systems. On the other hand, passive models of restoration consist of promoting natural successional processes with native plants. The objective in this review is to discuss the role of litter production and decomposition as a key strategy to reactivate biogeochemical nutrient cycles and thus improve soil quality in degraded land of the tropics. For this purpose the results of different projects of land restoration in Colombia are presented based on the dynamics of litter production, nutrient content, and decomposition. The results indicate that in only 6–13 years it is possible to detect soil properties improvements due to litter fall and decomposition. Despite that, low soil nutrient availability, particularly of N and P, seems to be major constraint to reclamation of these fragile ecosystems. PMID:24696656

Scaling up food production in the Upper Mississippi river basin: modeling impacts on water quality and nutrient cycling

NASA Astrophysics Data System (ADS)

Bowen, E. E.; Martin, P. A.; Schuble, T. J.; Yan, E.; Demissie, Y.

2010-12-01

Agricultural production imposes significant environmental stress on the landscape, both in the intensity and extent of agricultural activities. Among the most significant impacts, agriculture dominates the natural reactive nitrogen cycle, with excess reactive nitrogen leading to the degraded quality of inland and coastal waters. In the U.S., policymakers and stakeholders nationwide continue to debate strategies for decreasing environmental degradation from agricultural lands. Such strategies aim to optimize the balance among competing demands for food, fuel and ecosystem services. One such strategy increasingly discussed in the national debate is that of localizing food production around urban areas, developing what some have recently called “foodsheds”. However, the environmental impacts of localizing food production around population centers are not well-understood given the hard-to-generalize variety seen in management practices currently employed among local farms marketing food crops directly to consumers. As a first, landscape level study of potential impacts from scaling up this type of agriculture, we use the USDA Soil and Water Assessment Tool (SWAT) model to quantify environmental impacts from developing foodsheds for all population centers in the Upper Mississippi river basin. Specifically, we focus on nutrient cycling and water quality impacts determining direct greenhouse gas emissions and changes to nutrient runoff from increased food production in this watershed. We investigate a variety of scenarios in which food production is scaled up to the regional level using different types of farm management practices, ranging from conventional production of fruits and vegetables, to production of these products from small-scale, diversified systems integrating conservation easements. In addition to impacts on nutrient cycling and water quality, we also characterize relative levels of productivity in conjunction with overall demand for food associated with population centers to address one aspect of socio-economic concern.

Spatiotemporal patterns of livestock manure nutrient production in the conterminous United States from 1930 to 2012.

PubMed

Yang, Qichun; Tian, Hanqin; Li, Xia; Ren, Wei; Zhang, Bowen; Zhang, Xuesong; Wolf, Julie

2016-01-15

Manure nitrogen (N) and phosphorus (P) from livestock husbandry are important components of terrestrial biogeochemical cycling. Assessment of the impacts of livestock manure on terrestrial biogeochemistry requires a compilation and analysis of spatial and temporal patterns of manure nutrients. In this study, we reconstructed county-level manure nutrient data of the conterminous United States (U.S.) in 4- to 5-year increments from 1930 to 2012. Manure N and P were 5.8 9 ± 0.64 Tg N yr.(-1) (Mean ± Standard Deviation) and 1.73 ± 0.29 Tg Pyr.(-1) (1 Tg = 10(12)g), and increased by 46% and 92% from 1930 to 2012, respectively. Prior to 1970, manure provided more N to the U.S. lands than chemical fertilizer use. Since 1970, however, increasing chemical N fertilizer use has exceeded manure N production. Manure was the primary P source in the U.S. during 1930-1969 and 1987-2012, but was lower than P fertilizer use in 1974, 1978, and 1982. High-nutrient-production regions shifted towards eastern and western areas of the U.S. Decreasing small farms and increasing Concentrated Animal Feeding Operations (CAFOs) induced concentrated spatial patterns in manure nutrient loads. Counties with cattle or poultry as the primary manure nutrient contributors expanded significantly from 1930 to 2012, whereas regions with sheep and hog as the primary contributors decreased. We identified regions facing environmental threats associated with livestock farming. Effective management of manure should consider the impacts of CAFOs in manure production, and changes in livestock population structure. The long-term county-level manure nutrient dataset provides improved spatial and temporal information on manure nutrients in the U.S. This dataset is expected to help advance research on nutrient cycling, ammonia volatilization, greenhouse gas (GHG) emissions from livestock husbandry, recovery and reuse of manure nutrients, and impacts of livestock feeding on human health in the context of global change. Copyright © 2015 Elsevier B.V. All rights reserved.

Spatiotemporal patterns of livestock manure nutrient production in the conterminous United States from 1930 to 2012

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Qichun; Tian, Hanqin; Li, Xia

Manure nitrogen (N) and phosphorus (P) from livestock husbandry are important components of terrestrial biogeochemical cycling. Assessment of the impacts of livestock manure on terrestrial biogeochemistry requires a compilation and analysis of spatial and temporal patterns of manure nutrients. In this study, we reconstructed county-level manure nutrient data of the conterminous United States (U.S.) in 4- to 5-year increments from 1930 to 2012. Manure N and P were 5.89 +/- 0.64 Tg N yr.(-1) (Mean +/- Standard Deviation) and 1.73 +/- 0.29 Tg P yr.(-1) (1 Tg=10(12) g), and increased by 46% and 92% from 1930 to 2012, respectively. Priormore » to 1970, manure provided more N to the U.S. lands than chemical fertilizer use. Since 1970, however, increasing chemical N fertilizer use has exceeded manure N production. Manure was the primary P source in the U.S. during 1930-1969 and 1987-2012, but was lower than P fertilizer use in 1974, 1978, and 1982. High-nutrient-production regions shifted towards eastern and western areas of the U.S. Decreasing small farms and increasing Concentrated Animal Feeding Operations (CAFOs) induced concentrated spatial patterns in manure nutrient loads. Counties with cattle or poultry as the primary manure nutrient contributors expanded significantly from 1930 to 2012, whereas regions with sheep and hog as the primary contributors decreased. We identified regions facing environmental threats associated with livestock farming. Effective management of manure should consider the impacts of CAFOs inmanure production, and changes in livestock population structure. The long-term county-level manure nutrient dataset provides improved spatial and temporal information on manure nutrients in the U.S. This dataset is expected to help advance research on nutrient cycling, ammonia volatilization, greenhouse gas (GHG) emissions from livestock husbandry, recovery and reuse of manure nutrients, and impacts of livestock feeding on human health in the context of global change.« less

Tropical rain forest biogeochemistry in a warmer world: initial results from a novel warming experiment in a Puerto Rico tropical forest

NASA Astrophysics Data System (ADS)

Reed, S.; Cavaleri, M. A.; Alonso-Rodríguez, A. M.; Kimball, B. A.; Wood, T. E.

2016-12-01

Tropical forests represent one of the planet's most active biogeochemical engines. They account for the dominant proportion of Earth's live terrestrial plant biomass, nearly one-third of all soil carbon, and exchange more CO2 with the atmosphere than any other biome. In the coming decades, the tropics will experience extraordinary changes in temperature, and our understanding of how this warming will affect biogeochemical cycling remains notably poor. Given the large amounts of carbon tropical forests store and cycle, it is no surprise that our limited ability to characterize tropical forest responses to climate change may represent the largest hurdle in accurately predicting Earth's future climate. Here we describe initial results from the world's first tropical forest field warming experiment, where forest understory plants and soils are being warmed 4 °C above ambient temperatures. This Tropical Responses to Altered Climate Experiment (TRACE) was established in a rain forest in Puerto Rico to investigate the effects of increased temperature on key biological processes that control tropical forest carbon cycling, and to establish the steps that need to be taken to resolve the uncertainties surrounding tropical forest responses to warming. In this talk we will describe the experimental design, as well as the wide range of measurements being conducted. We will also present results from the initial phase of warming, including data on how increased temperatures from infrared lamp warming affected soil moisture, soil respiration rates, a suite of carbon pools, soil microbial biomass, nutrient availability, and the exchange of elements between leaf litter and soil. These data represent a first look into tropical rain forest responses to an experimentally-warmed climate in the field, and provide exciting insight into the non-linear ways tropical biogeochemical cycles respond to change. Overall, we strive to improve Earth System Model parameterization of the pools and fluxes of water, carbon, and nutrients in tropical forested ecosystems and the data shown will highlight how these cycles are coupled and independently altered by warming.

From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality

PubMed Central

Kreft, Jan-Ulrich; Plugge, Caroline M.; Prats, Clara; Leveau, Johan H. J.; Zhang, Weiwen; Hellweger, Ferdi L.

2017-01-01

Models are important tools in microbial ecology. They can be used to advance understanding by helping to interpret observations and test hypotheses, and to predict the effects of ecosystem management actions or a different climate. Over the past decades, biological knowledge and ecosystem observations have advanced to the molecular and in particular gene level. However, microbial ecology models have changed less and a current challenge is to make them utilize the knowledge and observations at the genetic level. We review published models that explicitly consider genes and make predictions at the population or ecosystem level. The models can be grouped into three general approaches, i.e., metabolic flux, gene-centric and agent-based. We describe and contrast these approaches by applying them to a hypothetical ecosystem and discuss their strengths and weaknesses. An important distinguishing feature is how variation between individual cells (individuality) is handled. In microbial ecosystems, individual heterogeneity is generated by a number of mechanisms including stochastic interactions of molecules (e.g., gene expression), stochastic and deterministic cell division asymmetry, small-scale environmental heterogeneity, and differential transport in a heterogeneous environment. This heterogeneity can then be amplified and transferred to other cell properties by several mechanisms, including nutrient uptake, metabolism and growth, cell cycle asynchronicity and the effects of age and damage. For example, stochastic gene expression may lead to heterogeneity in nutrient uptake enzyme levels, which in turn results in heterogeneity in intracellular nutrient levels. Individuality can have important ecological consequences, including division of labor, bet hedging, aging and sub-optimality. Understanding the importance of individuality and the mechanism(s) underlying it for the specific microbial system and question investigated is essential for selecting the optimal modeling strategy. PMID:29230200

Mineral cycling in soil and litter arthropod food chains. Three-year progress report, February 1, 1984-January 31, 1987

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crossley, D.A. Jr.

1986-08-29

This report summarizes progress in a three-year research project on the influence of soil arthropods (mites, collembolans, insects, millipedes and others) upon decomposition rates and nutrient dynamics in decaying vegetable matter. Research has concentrated on two aspects of elemental dynamics in decomposing organic matter: Effects of arthropods on rates of decomposition and nutrient loss (mineralization of carbon and other elements), and arthropod stimulation of microbial immobilization of nutrient elements during decomposition.

Relations between phytoplankton growth rates and nutrient dynamics in Lake Norman, North Carolina. Technical report series

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rodriguez, M.S.

A baseline study of phytoplankton production and nutrient dynamics was conducted on Lake Norman, NC, a 13000-ha, warm-monomictic reservoir, prior to the initiation of thermal inputs from an 1180-MW nuclear electric generation facility. The objective of the study was to identify the major physical, chemical and biological processes controlling nutrient dynamics in Lake Norman, with specific reference to the impact of phytoplankton production on the cycling of carbon, nitrogen and phosphorus.

Autochthonous and Allochthonous Carbon Cycling in a Eutrophic Flow-Through Wetland

EPA Science Inventory

Wetland environments are important sites for the cycling and retention of terrestrially derived organic matter and nutrients, the influx of which subsidizes wetland C sequestration, as well as fueling autochthonous C productivity. Wetland treatment of agricultural runoff has been...

A birds-eye view of biological connectivity in mangrove systems

NASA Astrophysics Data System (ADS)

Buelow, Christina; Sheaves, Marcus

2015-01-01

Considerable advances in understanding of biological connectivity have flowed from studies of fish-facilitated connectivity within the coastal ecosystem mosaic. However, there are limits to the information that fish can provide on connectivity. Mangrove-bird communities have the potential to connect coastal habitats in different ways and at different scales than fish, so incorporation of these links into our models of coastal ecosystem mosaics affords the opportunity to greatly increase the breadth of our understanding. We review the habitat and foraging requirements of mangrove-bird functional groups to understand how bird use of mangroves facilitates biological connectivity in coastal ecosystem mosaics, and how that connectivity adds to the diversity and complexity of ecological processes in mangrove ecosystems. Avian biological connectivity is primarily characterized by foraging behavior and habitat/resource requirements. Therefore, the consequence of bird links for coastal ecosystem functioning largely depends on patterns of habitat use and foraging, and potentially influences nutrient cycling, top-down control and genetic information linkage. Habitats that experience concentrated bird guano deposition have high levels of nitrogen and phosphorus, placing particular importance on the consequences of avian nutrient translocation and subsidization for coastal ecosystem functioning. High mobility allows mangrove-bird communities to link mangrove forests to other mangrove, terrestrial and marine-pelagic systems. Therefore, the spatial scale of coastal connectivity facilitated by birds is substantially more extensive than fish-facilitated connectivity. In particular, migratory birds link habitats at regional, continental and inter-continental scales as they travel among seasonally available feeding areas from breeding grounds to non-breeding grounds; scales at which there are few fish equivalents. Knowledge of the nature and patterns of fish connectivity have contributed to shifting the initial, historical perception of mangrove-ecosystem functioning from that of a simple system based on nutrient and energy retention, to a view that includes fish-facilitated energy export. In a similar way, understanding the nature and implications of mangrove connectivity through bird movements and migrations affords new possibilities for revising our view of the extent of functional links between mangroves and other ecosystems.

Enzymology under global change: organic nitrogen turnover in alpine and sub-Arctic soils.

PubMed

Weedon, James T; Aerts, Rien; Kowalchuk, George A; van Bodegom, Peter M

2011-01-01

Understanding global change impacts on the globally important carbon storage in alpine, Arctic and sub-Arctic soils requires knowledge of the mechanisms underlying the balance between plant primary productivity and decomposition. Given that nitrogen availability limits both processes, understanding the response of the soil nitrogen cycle to shifts in temperature and other global change factors is crucial for predicting the fate of cold biome carbon stores. Measurements of soil enzyme activities at different positions of the nitrogen cycling network are an important tool for this purpose. We review a selection of studies that provide data on potential enzyme activities across natural, seasonal and experimental gradients in cold biomes. Responses of enzyme activities to increased nitrogen availability and temperature are diverse and seasonal dynamics are often larger than differences due to experimental treatments, suggesting that enzyme expression is regulated by a combination of interacting factors reflecting both nutrient supply and demand. The extrapolation from potential enzyme activities to prediction of elemental nitrogen fluxes under field conditions remains challenging. Progress in molecular '-omics' approaches may eventually facilitate deeper understanding of the links between soil microbial community structure and biogeochemical fluxes. In the meantime, accounting for effects of the soil spatial structure and in situ variations in pH and temperature, better mapping of the network of enzymatic processes and the identification of rate-limiting steps under different conditions should advance our ability to predict nitrogen fluxes.

Effects of salt pond restoration on benthic flux: Sediment as a source of nutrients to the water column

USGS Publications Warehouse

Topping, Brent R.; Kuwabara, James S.; Carter, James L.; Garrettt, Krista K.; Mruz, Eric; Piotter, Sarah; Takekawa, John Y.

2016-01-01

Understanding nutrient flux between the benthos and the overlying water (benthic flux) is critical to restoration of water quality and biological resources because it can represent a major source of nutrients to the water column. Extensive water management commenced in the San Francisco Bay, Beginning around 1850, San Francisco Bay wetlands were converted to salt ponds and mined extensively for more than a century. Long-term (decadal) salt pond restoration efforts began in 2003. A patented device for sampling porewater at varying depths, to calculate the gradient, was employed between 2010 and 2012. Within the former ponds, the benthic flux of soluble reactive phosphorus and that of dissolved ammonia were consistently positive (i.e., moving out of the sediment into the water column). The lack of measurable nitrate or nitrite concentration gradients across the sediment-water interface suggested negligible fluxes for dissolved nitrate and nitrite. The dominance of ammonia in the porewater indicated anoxic sediment conditions, even at only 1 cm depth, which is consistent with the observed, elevated sediment oxygen demand. Nearby openestuary sediments showed much lower benthic flux values for nutrients than the salt ponds under resortation. Allochthonous solute transport provides a nutrient advective flux for comparison to benthic flux. For ammonia, averaged for all sites and dates, benthic flux was about 80,000 kg/year, well above the advective flux range of −50 to 1500 kg/year, with much of the variability depending on the tidal cycle. By contrast, the average benthic flux of soluble reactive phosphorus was about 12,000 kg/year, of significant magnitude, but less than the advective flux range of 21,500 to 30,000 kg/year. These benthic flux estimates, based on solute diffusion across the sediment-water interface, reveal a significant nutrient source to the water column of the pond which stimulates algal blooms (often autotrophic). This benthic source may be augmented further by bioturbation, bioirrigation and episodic sediment resuspension events.

Temporal variation of autotrophic picoplankton contribution to coastal phytoplankton communities over a seasonal cycle: A case study

NASA Astrophysics Data System (ADS)

Koçum, Esra

2017-04-01

Autotrophic pico-plankton form the smallest component of phytoplankton and refers to cells smaller than 2 µM. It is phylogenetically diverse and have both prokaryotic and eukaryotic components. Prokaryotic pico-autotrophs are unicellular cyanobacteria, represented mainly by Prochlorococcus and Synechococcus genera. Pico-eukaryotes are more diverse and include members of Chlorophyta, Cryptophyta, Haptophyta and Heterokontophyta. Owing to their higher nutrient acquisition capacity, relative share of pico-plankton in autotrophic production and biomass can be significant and even dominant in oligotrophic regions such as in warm tropical waters. They also fare better than larger members of phytoplankton communities under light limitation and under increasing temperature. Recent work has shown that autotrophic pico-plankton can be a significant component of coastal phytoplankton. In view of the global warming related increase in the sea surface temperature and nutrient enrichment of coastal waters, it is necessary to understand variation in the relative share of different sized groups in phytoplankton communities of coastal ecosystems including pico-plankton biomass as it shows the potential for development of microbial food web. Here, an interpretation of temporal patterns detected in the biomass and the relative contribution of pico-sized (< 2 µm) members of phytoplankton was made using data collected from two coastal sites over a year. The findings revealed the significant spatio-temporal variation in both actual pico-plankton biomass and its relative share in phytoplankton. The average biomass values of pico-plankton were 0.23 ± 0.02 µ g chl a L-1 and 0.15 ± 0.01 µg chl a L-1 at nutrient-poor and nutrient-rich sites; respectively. The temporal pattern of change displayed by picoplankton biomass was not seasonal at nutrient rich site while at nutrient poor site it was seasonal with low values measured over winter suggesting it was the seasonal changes leading to the emergence of temporal pattern of change in pico-plankton abundance observed at this site.

An approach to monitor food and nutrition from "factory to fork".

PubMed

Slining, Meghan M; Yoon, Emily Ford; Davis, Jessica; Hollingsworth, Bridget; Miles, Donna; Ng, Shu Wen

2015-01-01

Accurate, adequate, and timely food and nutrition information is necessary in order to monitor changes in the US food supply and assess their impact on individual dietary intake. Our aim was to develop an approach that links time-specific purchase and consumption data to provide updated, market representative nutrient information. We utilized household purchase data (Nielsen Homescan, 2007-2008), self-reported dietary intake data (What We Eat in America [WWEIA], 2007-2008), and two sources of nutrition composition data. This Factory to Fork Crosswalk approach connected each of the items reported to have been obtained from stores from the 2007-2008 cycle of the WWEIA dietary intake survey to corresponding food and beverage products that were purchased by US households during the equivalent time period. Using nutrition composition information and purchase data, an alternate Crosswalk-based nutrient profile for each WWEIA intake code was created weighted by purchase volume of all corresponding items. Mean intakes of daily calories, total sugars, sodium, and saturated fat were estimated. Differences were observed in the mean daily calories, sodium, and total sugars reported consumed from beverages, yogurts, and cheeses, depending on whether the Food and Nutrient Database for Dietary Studies 4.1 or the alternate nutrient profiles were used. The Crosswalk approach augments national nutrition surveys with commercial food and beverage purchases and nutrient databases to capture changes in the US food supply from factory to fork. The Crosswalk provides a comprehensive and representative measurement of the types, amounts, prices, locations and nutrient composition of consumer packaged goods foods and beverages consumed in the United States. This system has potential to be a major step forward in understanding the consumer packaged goods sector of the US food system and the impacts of the changing food environment on human health. Copyright © 2015 Academy of Nutrition and Dietetics. Published by Elsevier Inc. All rights reserved.

Did large animals play an important role in global biogeochemical cycling in the past?

NASA Astrophysics Data System (ADS)

Doughty, C.

2014-12-01

In the late Pleistocene (~50-10,000 years ago), ninety-seven genera of large animals (>44kg) (megafauna) went extinct, concentrated in the Americas and Australia. The loss of megafauna had major effects on ecosystem structure, seed dispersal and land surface albedo. However, the impact of this dramatic extinction on ecosystem nutrient biogeochemistry, through the lateral transport of dung and bodies, has never been explored. Here we explore these nutrient impacts using a novel mathematical framework that analyses this lateral transport as a diffusion-like process and demonstrates that large animals play a disproportionately large role in the horizontal transfer of nutrients across landscapes. For example, we estimate that the extinction of the Amazonian megafauna led to a >98% reduction in the lateral transfer flux of the limiting nutrient phosphorus (P) with similar, though less extreme, decreases in all continents outside of Africa. This resulted in strong decreases in phosphorus availability in Eastern Amazonia away from fertile floodplains, a decline which may still be ongoing, and current P limitation in the Amazon basin may be partially a relic of an ecosystem without the functional connectedness it once had. More broadly, the Pleistocene megafaunal extinctions resulted in major and ongoing disruptions to terrestrial biogeochemical cycling at continental scales and increased nutrient heterogeneity globally.

The use of food waste as a carbon source for on-site treatment of nutrient-rich blackwater from an office block.

PubMed

Tannock, Simon J C; Clarke, William P

2016-09-01

Wastewater from office blocks is typically dominated by blackwater and is therefore concentrated and nutrient-rich. A pilot plant was operated for 260 days, receiving 300 L d(-1) of wastewater directly from an office building to determine whether nutrient removal could be achieved using food waste (FW) as a supplemental carbon source. The pilot plant consisted of a 600 L prefermenter and a 600 L membrane bioreactor that was operated as a sequential batch reactor in order to cycle through anoxic, anaerobic and aerobic phases. The influent wastewater Chemical Oxygen Demand (COD)/N/P was, on average, 1438/275/40 mg L(-1), considerably higher than typical municipal wastewater. Treatment trials on the wastewater alone showed that the COD was only marginally sufficient to exhaust nitrate, and initiate anaerobic conditions required for phosphate removal. The addition of 15 kg d(-1) of macerated FW increased the average influent COD/N/P concentrations to 20,072/459/66 mg L(-1). The suitability of FW as a carbon source was demonstrated by denitrification to NOx-N concentration of <1 mg L(-1) during the biological nutrient removal (BNR) cycles. N removal was limited by nitrification. FW also induced the anaerobic phase within the BNR cycles necessary for P removal. The final average COD (non-recalcitrant)/N/P effluent concentrations under FW supplementation were 7/50/13 mg L(-1) which equates to 99%, 89% and 80% COD/N/P removal, respectively, meeting the highest nutrient removal efficiency standards stipulated by state jurisdictions for on-site systems in the USA.

Multi-scale controls on spatial variability in river biogeochemical cycling

NASA Astrophysics Data System (ADS)

Blaen, Phillip; Kurz, Marie; Knapp, Julia; Mendoza-Lera, Clara; Lee-Cullin, Joe; Klaar, Megan; Drummond, Jennifer; Jaeger, Anna; Zarnetske, Jay; Lewandowski, Joerg; Marti, Eugenia; Ward, Adam; Fleckenstein, Jan; Datry, Thibault; Larned, Scott; Krause, Stefan

2016-04-01

Excessive nutrient concentrations are common in surface waters and groundwaters in agricultural catchments worldwide. Increasing geomorphological heterogeneity in river channels may help to attenuate nutrient pollution by facilitating water exchange fluxes with the hyporheic zone; a site of intense microbial activity where biogeochemical cycling rates can be high. However, the controls on spatial variability in biogeochemical cycling, particularly at scales relevant for river managers, are largely unknown. Here, we aimed to assess: 1) how differences in river geomorphological heterogeneity control solute transport and rates of biogeochemical cycling at sub-reach scales (102 m); and 2) the relative magnitude of these differences versus those relating to reach scale substrate variability (103 m). We used the reactive tracer resazurin (Raz), a weakly fluorescent dye that transforms to highly fluorescent resorufin (Rru) under mildly reducing conditions, as a proxy to assess rates of biogeochemical cycling in a lowland river in southern England. Solute tracer tests were conducted in two reaches with contrasting substrates: one sand-dominated and the other gravel-dominated. Each reach was divided into sub-reaches that varied in geomorphic complexity (e.g. by the presence of pool-riffle sequences or the abundance of large woody debris). Slug injections of Raz and the conservative tracer fluorescein were conducted in each reach during baseflow conditions (Q ≈ 80 L/s) and breakthrough curves monitored using in-situ fluorometers. Preliminary results indicate overall Raz:Rru transformation rates in the gravel-dominated reach were more than 50% higher than those in the sand-dominated reach. However, high sub-reach variability in Raz:Rru transformation rates and conservative solute transport parameters suggests small scale targeted management interventions to alter geomorphic heterogeneity may be effective in creating hotspots of river biogeochemical cycling and nutrient load attenuation.

Lanthanum resulted in unbalance of nutrient elements and disturbance of cell proliferation cycles in V. faba L. seedlings.

PubMed

Wang, Chengrun; Lu, Xianwen; Tian, Yuan; Cheng, Tao; Hu, Lingling; Chen, Fenfen; Jiang, Chuanjun; Wang, Xiaorong

2011-11-01

Effects of lanthanum (La) on mineral nutrients, cell cycles, and root lengthening have been little reported. The present work investigated these physiological responses in roots of Vicia faba seedlings cultivated in La3+-contained solutions for 15 days. The results showed that the increasing contents of La in the roots and leaves contributed to disbalances of contents of Ca, Fe, Cu, Zn, Mg, Mn, P, and K elements, and potential redistributions of some elements in the roots and leaves. These disbalances might be involved in the subsequent alteration of cell cycle phases in the root tips. Low-dose promotion and high-dose inhibition (Hormetic effects) were demonstrated as the dose responses of G0/G1-, S- or G2/M-phase ratios. The cell cycles were most probably arrested at G1/S interphase by La3+ in the root tips. The fact that the root lengths were not consistent with the changes of cell cycle phases suggested that the cell proliferation activities might be masked by other factors (e.g., cell expansion) under long-time exposure to La3+.

Mycorrhizal Controls on Nitrogen Uptake Drive Carbon Cycling at the Global Scale

NASA Astrophysics Data System (ADS)

Shi, M.; Fisher, J. B.; Brzostek, E. R.; Phillips, R.

2015-12-01

Nearly all plants form symbiotic relationships with one of two types of mycorrhizal fungi—arbuscular mycorrhizae (AM) and ectomycorrhizal (ECM) fungi, which are essential to global biogeochemical cycling of nutrient elements. In soils with higher rates of nitrogen and phosphorus mineralization from organic matter, AM-associated plants can be better adapted than ECM-associated plants. Importantly, the photosynthate costs of nutrient uptake for AM-associated plants are usually lower than that for ECM-associated plants. Thus, the global carbon cycle is closely coupled with mycorrhizal controls on N uptake. To investigate the potential climate dependence of terrestrial environments from AM- and ECM-associated plants, this study uses the Community Atmosphere Model (CAM) with a plant productivity-optimized N acquisition model—the Fixation and Uptake of Nitrogen (FUN) model—integrated into its land model—the Community Land Model (CLM). This latest version of CLM coupled with FUN allows for the assessment of mycorrhizal controls on global biogeochemical cycling. Here, we show how the historical evolution of AM- and ECM-associations altered regional and global biogeochemical cycling and climate, and future projections over the next century.

The islet beta-cell: fuel responsive and vulnerable.

PubMed

Nolan, Christopher J; Prentki, Marc

2008-10-01

The pancreatic beta-cell senses blood nutrient levels and is modulated by neurohormonal signals so that it secretes insulin according to the need of the organism. Nutrient sensing involves marked metabolic activation, resulting in the production of coupling signals that promote insulin biosynthesis and secretion. The beta-cell's high capacity for nutrient sensing, however, necessitates reduced protection to nutrient toxicity. This potentially explains why in susceptible individuals, chronic fuel surfeit results in beta-cell failure and type 2 diabetes. Here we discuss recent insights into first, the biochemical basis of beta-cell signaling in response to glucose, amino acids and fatty acids, and second, beta-cell nutrient detoxification. We emphasize the emerging role of glycerolipid/fatty acid cycling in these processes.

Fractionation of metal stable isotopes by higher plants

USGS Publications Warehouse

Von Blanckenburg, F.; Von Wiren, N.; Guelke, M.; Weiss, D.J.; Bullen, T.D.

2009-01-01

Higher plants induce chemical reactions in the rhizosphere, facilitating metal uptake by roots. Fractionation of the isotopes in nutrients such as calcium, iron, magnesium, and zinc produces a stable isotope composition in the plants that generally differs from that of the growth medium. Isotope fractionation also occurs during transport of the metals within most plants, but its extent depends on plant species and on the metal, in particular, on the metal's redox state and what ligand it is bound to. The metal stable isotope variations observed in plants create an isotope signature of life at the Earth's surface, contributing substantially to our understanding of metal cycling processes in the environment and in individual organisms.

Role of Marine Biology in Glacial-Interglacial CO2 Cycles

NASA Astrophysics Data System (ADS)

Kohfeld, Karen E.; Le Quéré, Corinne; Harrison, Sandy P.; Anderson, Robert F.

2005-04-01

It has been hypothesized that changes in the marine biological pump caused a major portion of the glacial reduction of atmospheric carbon dioxide by 80 to 100 parts per million through increased iron fertilization of marine plankton, increased ocean nutrient content or utilization, or shifts in dominant plankton types. We analyze sedimentary records of marine productivity at the peak and the middle of the last glacial cycle and show that neither changes in nutrient utilization in the Southern Ocean nor shifts in plankton dominance explain the CO2 drawdown. Iron fertilization and associated mechanisms can be responsible for no more than half the observed drawdown.

Phosphate limitation induces sporulation in the chytridiomycete Blastocladiella emersonii.

PubMed

Bongiorno, Vagner Alexandre; Ferreira da Cruz, Angela; Nunis da Silva, Antonio; Corrêa, Luiz Carlos

2012-09-01

The cell cycle is controlled by numerous mechanisms that ensure correct cell division. If growth is not possible, cells may eventually promote autophagy, differentiation, or apoptosis. Microorganisms interrupt their growth and differentiate under general nutrient limitation. We analyzed the effects of phosphate limitation on growth and sporulation in the chytridiomycete Blastocladiella emersonii using kinetic data, phase-contrast, and laser confocal microscopy. Under phosphate limitation, zoospores germinated and subsequently formed 2-4 spores, regardless of the nutritional content of the medium. The removal of phosphate at any time during growth induced sporulation of vegetative cells. If phosphate was later added to the same cultures, growth was restored if the cells were not yet committed to sporulation. The cycles of addition and withdrawal of phosphate from growth medium resulted in cycles of germination-growth, germination-sporulation, or germination-growth-sporulation. These results show that phosphate limitation is sufficient to interrupt cell growth and to induce complete sporulation in B. emersonii. We concluded that the determination of growth or sporulation in this microorganism is linked to phosphate availability when other nutrients are not limiting. This result provides a new tool for the dissection of nutrient-energy and signal pathways in cell growth and differentiation.

Temporal and Spatial Dynamics of Diel-Cycling Hypoxia in Four Northern Gulf of Mexico Estuaries

EPA Science Inventory

Eutrophication of coastal ecosystems has accelerated in recent decades due to population growth and associated nutrient pollution, resulting in increased incidence of hypoxia. Shallow and highly productive estuaries and embayments are particularly susceptible to diel-cycling hypo...

Long-term Nutrient Fertilization Increases CO2 Loss in Arctic Tundra

NASA Astrophysics Data System (ADS)

Graham, L. M.; Natali, S.; Rastetter, E. B.; Shaver, G. R.; Risk, D. A.; Loranty, M. M.; Jastrow, J. D.

2015-12-01

As anthropogenic climate change warms the Arctic, organic carbon (C) trapped in permafrost is at an increased risk of being released to the atmosphere as carbon dioxide (CO2). At the same time, higher rates of decomposition may increase nutrient availability and enhance plant growth, leading to an uptake of C that may offset respiratory losses. Arctic tundra ecosystems are highly nitrogen (N) limited, and the indirect effects of warming on nutrient availability will be the most likely outcome of increased temperature on plant productivity. This study aims to understand the effects of nutrient addition on arctic CO2 and H2O exchange in a tundra ecosystem at Toolik Lake Field Station, Alaska. The nutrient addition experiment, which began in 2006, is comprised of 7 fertilization treatments: 0.5, 1, 2, 5, and 10 g m-2 of N as NO3- and NH4+ (1:1) with 0.25, 0.5, 1, 2.5, and 5 g m-2 of phosphorus as PO43-; 5 g m-2 of N as NO3-; 5 g m-2 of N as NH4+, and one control plot. Plot-level CO2 and H2O exchange was measured at 5 light levels 7 times over a four-week period in June and July 2015. We measured ecosystem CO2 and H2O exchange using a rectangular plexiglass chamber (0.49 m2) that was connected to an infrared gas analyzer (LI-840). Other ecosystem variables measured include thaw depth, soil moisture and temperature, and normalized difference vegetation index. After 10 years of nutrient addition, fertilization significantly altered ecosystem C cycling. Soil respiration was greatest in the highest fertilization treatment (2.97 μmol m-2 s-1), increasing linearly with nutrient level at a rate of 0.133 μmol m-2 s-1 per g m-2 of N added (R2=0.914). Net CO2 uptake was greatest under highest fertilization (-2.06 μmol m-2 s-1), decreasing linearly with nutrient addition at a rate of -0.068 μmol m-2 s-1 per g m-2 of N added (R2=0.687). These results suggest that as nutrients become more available under a warmer climate, plant productivity increases may not offset respiratory losses, leading to a positive feedback to global climate.

Convergence of microbial assimilations of soil carbon, nitrogen, phosphorus, and sulfur in terrestrial ecosystems

DOE PAGES

Xu, Xiaofeng; Hui, Dafeng; King, Anthony Wayne; ...

2015-11-27

How soil microbes assimilate carbon-C, nitrogen-N, phosphorus-P, and sulfur-S is fundamental for understanding nutrient cycling in terrestrial ecosystems. We compiled a global database of C, N, P, and S concentrations in soils and microbes and developed relationships between them by using a power function model. The C:N:P:S was estimated to be 287:17:1:0.8 for soils, and 42:6:1:0.4 for microbes. We found a convergence of the relationships between elements in soils and in soil microbial biomass across C, N, P, and S. The element concentrations in soil microbial biomass follow a homeostatic regulation curve with soil element concentrations across C, N, Pmore » and S, implying a unifying mechanism of microbial assimilating soil elements. This correlation explains the well-constrained C:N:P:S stoichiometry with a slightly larger variation in soils than in microbial biomass. Meanwhile, it is estimated that the minimum requirements of soil elements for soil microbes are 0.8 mmol C Kg –1 dry soil, 0.1 mmol N Kg –1 dry soil, 0.1 mmol P Kg –1 dry soil, and 0.1 mmol S Kg –1 dry soil, respectively. Lastly, these findings provide a mathematical explanation of element imbalance in soils and soil microbial biomass, and offer insights for incorporating microbial contribution to nutrient cycling into Earth system models.« less

The global stoichiometry of litter nitrogen mineralization

Treesearch

Stefano Manzoni; Robert B. Jackson; John A. Trofymow; Amilcare Porporato

2008-01-01

Plant residue decomposition and the nutrient release to the soil play a major role in global carbon and nutrient cycling. Although decomposition rates vary strongly with climate, nitrogen immobilization into litter and its release in mineral forms are mainly controlled by the initial chemical composition of the residues. We used a data set of ~2800 observations to show...

Leaf litter decomposition rates increase with rising mean annual temperature in Hawaiian tropical montane wet forests

Treesearch

Lori D. Bothwell; Paul C. Selmants; Christian P. Giardina; Creighton M. Litton

2014-01-01

Decomposing litter in forest ecosystems supplies nutrients to plants, carbon to heterotrophic soil microorganisms and is a large source of CO2 to the atmosphere. Despite its essential role in carbon and nutrient cycling, the temperature sensitivityof leaf litter decay in tropical forest ecosystems remains poorly resolved, especially in tropical...

Forest Floor Decomposition Following Hurricane Litter Inputs in Several Puerto Rican Forests

Treesearch

Rebecca Ostertag; Frederick N. Scatena; Whendee L. Silver

2003-01-01

Hurricanes affect ecosystem processes by altering resource availability and heterogeneity, but the spatial and temporal signatures of these events on biomass and nutrient cycling processes are not well understood. We examined mass and nutrient inputs of hurricane-derived litter in six tropical forests spanning three life zones in northeastern Puerto Rico after the...

Seasonal greenhouse gas and soil nutrient cycling in semi-arid native and non-native perennial grass pastures

USDA-ARS?s Scientific Manuscript database

Previous research indicates that a difference occurs in native and non-native grass species in regard to drivers of greenhouse gas (GHG, (carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O))) emissions from soil. Drivers of soil nutrients could help establish best management practices to mit...