Sample records for unit cell boundaries

  1. Approximating the stress field within the unit cell of a fabric reinforced composite using replacement elements

    NASA Technical Reports Server (NTRS)

    Foye, R. L.

    1993-01-01

    This report concerns the prediction of the elastic moduli and the internal stresses within the unit cell of a fabric reinforced composite. In the proposed analysis no restrictions or assumptions are necessary concerning yarn or tow cross-sectional shapes or paths through the unit cell but the unit cell itself must be a right hexagonal parallelepiped. All the unit cell dimensions are assumed to be small with respect to the thickness of the composite structure that it models. The finite element analysis of a unit cell is usually complicated by the mesh generation problems and the non-standard, adjacent-cell boundary conditions. This analysis avoids these problems through the use of preprogrammed boundary conditions and replacement materials (or elements). With replacement elements it is not necessary to match all the constitutional material interfaces with finite element boundaries. Simple brick-shaped elements can be used to model the unit cell structure. The analysis predicts the elastic constants and the average stresses within each constituent material of each brick element. The application and results of this analysis are demonstrated through several example problems which include a number of composite microstructures.

  2. Approximate Boundaries for West Lake Landfill, Missouri, 2014, EPA REG 07

    EPA Pesticide Factsheets

    This ESRI File Geodatabase Feature Class contains polygons for GIS depicting the approximate boundaries for West Lake Landfill (MOD079900932), Missouri, 2014, EPA REG 07These polygons are for graphically representing the site. The estimated boundary was developed using St. Louis County Parcels (2014). The boundaries of the individual landfill cells and areas within the site are interpolated based on sample results from the Remedial Investigation Report, ??EMSI, 2000, Remedial Investigation Report, West Lake Landfill Operable Unit 1, April 10.??Boundaries for Operational Units derived from CAD drawings provided by Aquaterra Environmental Solutions, Inc based on work provided by Herst & Associates Inc. and published in the Record of Decision, West Lake Landfill Site, Bridgeton, Missouri, Operable Unit 2, July 2008. CERCLIS ID MOD079900932.

  3. Photonic band gap structure simulator

    DOEpatents

    Chen, Chiping; Shapiro, Michael A.; Smirnova, Evgenya I.; Temkin, Richard J.; Sirigiri, Jagadishwar R.

    2006-10-03

    A system and method for designing photonic band gap structures. The system and method provide a user with the capability to produce a model of a two-dimensional array of conductors corresponding to a unit cell. The model involves a linear equation. Boundary conditions representative of conditions at the boundary of the unit cell are applied to a solution of the Helmholtz equation defined for the unit cell. The linear equation can be approximated by a Hermitian matrix. An eigenvalue of the Helmholtz equation is calculated. One computation approach involves calculating finite differences. The model can include a symmetry element, such as a center of inversion, a rotation axis, and a mirror plane. A graphical user interface is provided for the user's convenience. A display is provided to display to a user the calculated eigenvalue, corresponding to a photonic energy level in the Brilloin zone of the unit cell.

  4. Stratification of TAD boundaries reveals preferential insulation of super-enhancers by strong boundaries.

    PubMed

    Gong, Yixiao; Lazaris, Charalampos; Sakellaropoulos, Theodore; Lozano, Aurelie; Kambadur, Prabhanjan; Ntziachristos, Panagiotis; Aifantis, Iannis; Tsirigos, Aristotelis

    2018-02-07

    The metazoan genome is compartmentalized in areas of highly interacting chromatin known as topologically associating domains (TADs). TADs are demarcated by boundaries mostly conserved across cell types and even across species. However, a genome-wide characterization of TAD boundary strength in mammals is still lacking. In this study, we first use fused two-dimensional lasso as a machine learning method to improve Hi-C contact matrix reproducibility, and, subsequently, we categorize TAD boundaries based on their insulation score. We demonstrate that higher TAD boundary insulation scores are associated with elevated CTCF levels and that they may differ across cell types. Intriguingly, we observe that super-enhancers are preferentially insulated by strong boundaries. Furthermore, we demonstrate that strong TAD boundaries and super-enhancer elements are frequently co-duplicated in cancer patients. Taken together, our findings suggest that super-enhancers insulated by strong TAD boundaries may be exploited, as a functional unit, by cancer cells to promote oncogenesis.

  5. On domain symmetry and its use in homogenization

    DOE PAGES

    Barbarosie, Cristian A.; Tortorelli, Daniel A.; Watts, Seth E.

    2017-03-08

    The present study focuses on solving partial differential equations in domains exhibiting symmetries and periodic boundary conditions for the purpose of homogenization. We show in a systematic manner how the symmetry can be exploited to significantly reduce the complexity of the problem and the computational burden. This is especially relevant in inverse problems, when one needs to solve the partial differential equation (the primal problem) many times in an optimization algorithm. The main motivation of our study is inverse homogenization used to design architected composite materials with novel properties which are being fabricated at ever increasing rates thanks to recentmore » advances in additive manufacturing. For example, one may optimize the morphology of a two-phase composite unit cell to achieve isotropic homogenized properties with maximal bulk modulus and minimal Poisson ratio. Typically, the isotropy is enforced by applying constraints to the optimization problem. However, in two dimensions, one can alternatively optimize the morphology of an equilateral triangle and then rotate and reflect the triangle to form a space filling D 3 symmetric hexagonal unit cell that necessarily exhibits isotropic homogenized properties. One can further use this D 3 symmetry to reduce the computational expense by performing the “unit strain” periodic boundary condition simulations on the single triangle symmetry sector rather than the six fold larger hexagon. In this paper we use group representation theory to derive the necessary periodic boundary conditions on the symmetry sectors of unit cells. The developments are done in a general setting, and specialized to the two-dimensional dihedral symmetries of the abelian D 2, i.e. orthotropic, square unit cell and nonabelian D 3, i.e. trigonal, hexagon unit cell. We then demonstrate how this theory can be applied by evaluating the homogenized properties of a two-phase planar composite over the triangle symmetry sector of a D 3 symmetric hexagonal unit cell.« less

  6. Boundary effect on the elastic field of a semi-infinite solid containing inhomogeneities

    PubMed Central

    Liu, Y. J.; Song, G.; Yin, H. M.

    2015-01-01

    The boundary effect of one inhomogeneity embedded in a semi-infinite solid at different depths has firstly been investigated using the fundamental solution for Mindlin's problem. Expanding the eigenstrain in a polynomial form and using the Eshelby's equivalent inclusion method, one can calculate the eigenstrain and thus obtain the elastic field. When the inhomogeneity is far from the boundary, the solution recovers Eshelby's solution. The method has been extended to a many-particle system in a semi-infinite solid, which is first demonstrated by the cases of two spheres. The comparison of the asymptotic form solution with the finite-element results shows the accuracy and capability of this method. The solution has been used to illustrate the boundary effects on its effective material behaviour of a semi-infinite simple cubic lattice particulate composite. The local field of a semi-infinite composite has been calculated at different volume fractions. A representative unit cell has been taken with different depths to the surface. The average stress and strain of the unit cell have been calculated under uniform loading conditions of normal or shear force on the surface, respectively. The effective elastic moduli of the unit cell not only depend on the material proportion, but also on its distance to the surface. The present model can be extended to other types of particle distribution and ellipsoidal particles. PMID:26345084

  7. Boundary effect on the elastic field of a semi-infinite solid containing inhomogeneities.

    PubMed

    Liu, Y J; Song, G; Yin, H M

    2015-07-08

    The boundary effect of one inhomogeneity embedded in a semi-infinite solid at different depths has firstly been investigated using the fundamental solution for Mindlin's problem. Expanding the eigenstrain in a polynomial form and using the Eshelby's equivalent inclusion method, one can calculate the eigenstrain and thus obtain the elastic field. When the inhomogeneity is far from the boundary, the solution recovers Eshelby's solution. The method has been extended to a many-particle system in a semi-infinite solid, which is first demonstrated by the cases of two spheres. The comparison of the asymptotic form solution with the finite-element results shows the accuracy and capability of this method. The solution has been used to illustrate the boundary effects on its effective material behaviour of a semi-infinite simple cubic lattice particulate composite. The local field of a semi-infinite composite has been calculated at different volume fractions. A representative unit cell has been taken with different depths to the surface. The average stress and strain of the unit cell have been calculated under uniform loading conditions of normal or shear force on the surface, respectively. The effective elastic moduli of the unit cell not only depend on the material proportion, but also on its distance to the surface. The present model can be extended to other types of particle distribution and ellipsoidal particles.

  8. Rhombicuboctahedron unit cell based scaffolds for bone regeneration: geometry optimization with a mechanobiology - driven algorithm.

    PubMed

    Boccaccio, Antonio; Fiorentino, Michele; Uva, Antonio E; Laghetti, Luca N; Monno, Giuseppe

    2018-02-01

    In a context more and more oriented towards customized medical solutions, we propose a mechanobiology-driven algorithm to determine the optimal geometry of scaffolds for bone regeneration that is the most suited to specific boundary and loading conditions. In spite of the huge number of articles investigating different unit cells for porous biomaterials, no studies are reported in the literature that optimize the geometric parameters of such unit cells based on mechanobiological criteria. Parametric finite element models of scaffolds with rhombicuboctahedron unit cell were developed and incorporated into an optimization algorithm that combines them with a computational mechanobiological model. The algorithm perturbs iteratively the geometry of the unit cell until the best scaffold geometry is identified, i.e. the geometry that allows to maximize the formation of bone. Performances of scaffolds with rhombicuboctahedron unit cell were compared with those of other scaffolds with hexahedron unit cells. We found that scaffolds with rhombicuboctahedron unit cell are particularly suited for supporting medium-low loads, while, for higher loads, scaffolds with hexahedron unit cells are preferable. The proposed algorithm can guide the orthopaedic/surgeon in the choice of the best scaffold to be implanted in a patient-specific anatomic region. Copyright © 2017 Elsevier B.V. All rights reserved.

  9. A new ghost-node method for linking different models and initial investigations of heterogeneity and nonmatching grids

    USGS Publications Warehouse

    Dickinson, J.E.; James, S.C.; Mehl, S.; Hill, M.C.; Leake, S.A.; Zyvoloski, G.A.; Faunt, C.C.; Eddebbarh, A.-A.

    2007-01-01

    A flexible, robust method for linking parent (regional-scale) and child (local-scale) grids of locally refined models that use different numerical methods is developed based on a new, iterative ghost-node method. Tests are presented for two-dimensional and three-dimensional pumped systems that are homogeneous or that have simple heterogeneity. The parent and child grids are simulated using the block-centered finite-difference MODFLOW and control-volume finite-element FEHM models, respectively. The models are solved iteratively through head-dependent (child model) and specified-flow (parent model) boundary conditions. Boundary conditions for models with nonmatching grids or zones of different hydraulic conductivity are derived and tested against heads and flows from analytical or globally-refined models. Results indicate that for homogeneous two- and three-dimensional models with matched grids (integer number of child cells per parent cell), the new method is nearly as accurate as the coupling of two MODFLOW models using the shared-node method and, surprisingly, errors are slightly lower for nonmatching grids (noninteger number of child cells per parent cell). For heterogeneous three-dimensional systems, this paper compares two methods for each of the two sets of boundary conditions: external heads at head-dependent boundary conditions for the child model are calculated using bilinear interpolation or a Darcy-weighted interpolation; specified-flow boundary conditions for the parent model are calculated using model-grid or hydrogeologic-unit hydraulic conductivities. Results suggest that significantly more accurate heads and flows are produced when both Darcy-weighted interpolation and hydrogeologic-unit hydraulic conductivities are used, while the other methods produce larger errors at the boundary between the regional and local models. The tests suggest that, if posed correctly, the ghost-node method performs well. Additional testing is needed for highly heterogeneous systems. ?? 2007 Elsevier Ltd. All rights reserved.

  10. Topologically associating domains are stable units of replication-timing regulation.

    PubMed

    Pope, Benjamin D; Ryba, Tyrone; Dileep, Vishnu; Yue, Feng; Wu, Weisheng; Denas, Olgert; Vera, Daniel L; Wang, Yanli; Hansen, R Scott; Canfield, Theresa K; Thurman, Robert E; Cheng, Yong; Gülsoy, Günhan; Dennis, Jonathan H; Snyder, Michael P; Stamatoyannopoulos, John A; Taylor, James; Hardison, Ross C; Kahveci, Tamer; Ren, Bing; Gilbert, David M

    2014-11-20

    Eukaryotic chromosomes replicate in a temporal order known as the replication-timing program. In mammals, replication timing is cell-type-specific with at least half the genome switching replication timing during development, primarily in units of 400-800 kilobases ('replication domains'), whose positions are preserved in different cell types, conserved between species, and appear to confine long-range effects of chromosome rearrangements. Early and late replication correlate, respectively, with open and closed three-dimensional chromatin compartments identified by high-resolution chromosome conformation capture (Hi-C), and, to a lesser extent, late replication correlates with lamina-associated domains (LADs). Recent Hi-C mapping has unveiled substructure within chromatin compartments called topologically associating domains (TADs) that are largely conserved in their positions between cell types and are similar in size to replication domains. However, TADs can be further sub-stratified into smaller domains, challenging the significance of structures at any particular scale. Moreover, attempts to reconcile TADs and LADs to replication-timing data have not revealed a common, underlying domain structure. Here we localize boundaries of replication domains to the early-replicating border of replication-timing transitions and map their positions in 18 human and 13 mouse cell types. We demonstrate that, collectively, replication domain boundaries share a near one-to-one correlation with TAD boundaries, whereas within a cell type, adjacent TADs that replicate at similar times obscure replication domain boundaries, largely accounting for the previously reported lack of alignment. Moreover, cell-type-specific replication timing of TADs partitions the genome into two large-scale sub-nuclear compartments revealing that replication-timing transitions are indistinguishable from late-replicating regions in chromatin composition and lamina association and accounting for the reduced correlation of replication timing to LADs and heterochromatin. Our results reconcile cell-type-specific sub-nuclear compartmentalization and replication timing with developmentally stable structural domains and offer a unified model for large-scale chromosome structure and function.

  11. Determining and representing width of soil boundaries using electrical conductivity and MultiGrid

    NASA Astrophysics Data System (ADS)

    Greve, Mogens Humlekrog; Greve, Mette Balslev

    2004-07-01

    In classical soil mapping, map unit boundaries are considered crisp even though all experienced survey personnel are aware of the fact, that soil boundaries really are transition zones of varying width. However, classification of transition zone width on site is difficult in a practical survey. The objective of this study is to present a method for determining soil boundary width and a way of representing continuous soil boundaries in GIS. A survey was performed using the non-contact conductivity meter EM38 from Geonics Inc., which measures the bulk Soil Electromagnetic Conductivity (SEC). The EM38 provides an opportunity to classify the width of transition zones in an unbiased manner. By calculating the spatial rate of change in the interpolated EM38 map across the crisp map unit delineations from a classical soil mapping, a measure of transition zone width can be extracted. The map unit delineations are represented as transition zones in a GIS through a concept of multiple grid layers, a MultiGrid. Each layer corresponds to a soil type and the values in a layer represent the percentage of that soil type in each cell. As a test, the subsoil texture was mapped at the Vindum field in Denmark using both the classical mapping method with crisp representation of the boundaries and the new map with MultiGrid and continuous boundaries. These maps were then compared to an independent reference map of subsoil texture. The improvement of the prediction of subsoil texture, using continuous boundaries instead of crisp, was in the case of the Vindum field, 15%.

  12. Topologically-associating domains are stable units of replication-timing regulation

    PubMed Central

    Pope, Benjamin D.; Ryba, Tyrone; Dileep, Vishnu; Yue, Feng; Wu, Weisheng; Denas, Olgert; Vera, Daniel L.; Wang, Yanli; Hansen, R. Scott; Canfield, Theresa K.; Thurman, Robert E.; Cheng, Yong; Gülsoy, Günhan; Dennis, Jonathan H.; Snyder, Michael P.; Stamatoyannopoulos, John A.; Taylor, James; Hardison, Ross C.; Kahveci, Tamer; Ren, Bing; Gilbert, David M.

    2014-01-01

    Summary Eukaryotic chromosomes replicate in a temporal order known as the replication-timing program1. During mammalian development, at least half the genome changes replication timing, primarily in units of 400–800 kb (“replication domains”; RDs), whose positions are preserved in different cell types, conserved between species, and appear to confine long-range effects of chromosome rearrangements2–7. Early and late replication correlate strongly with open and closed chromatin compartments identified by high-resolution chromosome conformation capture (Hi-C), and, to a lesser extent, lamina-associated domains (LADs)4,5,8,9. Recent Hi-C mapping has unveiled a substructure of topologically-associating domains (TADs) that are largely conserved in their positions between cell types and are similar in size to RDs8,10. However, TADs can be further sub-stratified into smaller domains, challenging the significance of structures at any particular scale11,12. Moreover, attempts to reconcile TADs and LADs to replication-timing data have not revealed a common, underlying domain structure8,9,13. Here, we localize boundaries of RDs to the early-replicating border of replication-timing transitions and map their positions in 18 human and 13 mouse cell types. We demonstrate that, collectively, RD boundaries share a near one-to-one correlation with TAD boundaries, whereas within a cell type, adjacent TADs that replicate at similar times obscure RD boundaries, largely accounting for the previously reported lack of alignment. Moreover, cell-type specific replication timing of TADs partitions the genome into two large-scale sub-nuclear compartments revealing that replication-timing transitions are indistinguishable from late-replicating regions in chromatin composition and lamina association and accounting for the reduced correlation of replication timing to LADs and heterochromatin. Our results reconcile cell type specific sub-nuclear compartmentalization with developmentally stable chromosome domains and offer a unified model for large-scale chromosome structure and function. PMID:25409831

  13. Characterization and Measurement of Passive and Active Metamaterial Devices

    DTIC Science & Technology

    2010-03-01

    A periodic bound- ary mirrors the computational domain along an axis. Unit cell boundary conditions mirror the computational domain along two axes... mirrored a number of times in each direction to create a square matrix of ring resonators. Figure 33(b) shows a 4× 4 array. The frequency domain...created by mirroring the previous structure three times. Thus, the dimensions of the particles are identical. The same boundary conditions and spacing

  14. Watershed boundaries and digital elevation model of Oklahoma derived from 1:100,000-scale digital topographic maps

    USGS Publications Warehouse

    Cederstrand, J.R.; Rea, A.H.

    1995-01-01

    This document provides a general description of the procedures used to develop the data sets included on this compact disc. This compact disc contains watershed boundaries for Oklahoma, a digital elevation model, and other data sets derived from the digital elevation model. The digital elevation model was produced using the ANUDEM software package, written by Michael Hutchinson and licensed from the Centre for Resource and Environmental Studies at The Australian National University. Elevation data (hypsography) and streams (hydrography) from digital versions of the U.S. Geological Survey 1:100,000-scale topographic maps were used by the ANUDEM package to produce a hydrologically conditioned digital elevation model with a 60-meter cell size. This digital elevation model is well suited for drainage-basin delineation using automated techniques. Additional data sets include flow-direction, flow-accumulation, and shaded-relief grids, all derived from the digital elevation model, and the hydrography data set used in producing the digital elevation model. The watershed boundaries derived from the digital elevation model have been edited to be consistent with contours and streams from the U.S. Geological Survey 1:100,000-scale topographic maps. The watershed data set includes boundaries for 11-digit Hydrologic Unit Codes (watersheds) within Oklahoma, and 8-digit Hydrologic Unit Codes (cataloging units) outside Oklahoma. Cataloging-unit boundaries based on 1:250,000-scale maps outside Oklahoma for the Arkansas, Red, and White River basins are included. The other data sets cover Oklahoma, and where available, portions of 1:100,000-scale quadrangles adjoining Oklahoma.

  15. A perfect Fresnel acoustic reflector implemented by a Fano-resonant metascreen

    NASA Astrophysics Data System (ADS)

    Amin, M.; Siddiqui, O.; Farhat, M.; Khelif, A.

    2018-04-01

    We propose a perfectly reflecting acoustic metasurface which is designed by replacing the curved segments of the traditional Fresnel reflector by flat Fano-resonant sub-wavelength unit cells. To preserve the original Fresnel focusing mechanism, the unit cell phase follows a specific phase profile which is obtained by applying the generalized Snell's law and Fermat's principle. The reflected curved phase fronts are thus created at the air-metasurface boundary by tailoring the metasurface dispersion as dictated by Huygens' principle. Since the unit cells are implemented by sub-wavelength double slit-shaped cavity resonators, the impinging sound waves are perfectly reflected producing acoustic focusing with negligible absorption. We use plane-wave solution and full-wave simulations to demonstrate the focusing effects. The simulation results closely follow the analytical predictions.

  16. Systematic design of broadband path-coiling acoustic metamaterials

    NASA Astrophysics Data System (ADS)

    Jia, Zhetao; Li, Junfei; Shen, Chen; Xie, Yangbo; Cummer, Steven A.

    2018-01-01

    A design approach for acoustic metamaterial unit cells based on a coiled path with impedance matching layers (IMLs) is proposed in this paper. A theoretical approach is developed to calculate the transmission of the labyrinthine unit cells with different effective refractive indices. The IML is introduced to broaden the transmission bandwidth and produce a lower envelope boundary of transmission for unit cells of different effective refractive indices. According to the theory, cells of all effective refractive indices can be built to achieve unitary transmission at center working frequencies. The working frequency can be tuned by adjusting the length of the IML. Numerical simulations based on finite element analysis are used to validate the theoretical predictions. The high transmission and low dispersive index nature of our designs are further verified by experiments within a broad frequency band of over 1.4 kHz centered at 2.86 kHz. Our design approach can be useful in various wavefront engineering applications.

  17. Accurate diblock copolymer phase boundaries at strong segregations

    NASA Astrophysics Data System (ADS)

    Matsen, M. W.; Whitmore, M. D.

    1996-12-01

    We examine the lamellar/cylinder and cylinder/sphere phase boundaries for strongly segregated diblock copolymer melts using self-consistent-field theory (SCFT) and the standard Gaussian chain model. Calculations are performed with and without the conventional unit-cell approximation (UCA). We find that for strongly segregated melts, the UCA simply produces a small constant shift in each of the phase boundaries. Furthermore, the boundaries are found to be linear at strong segregations when plotted versus (χN)-1, which allows for accurate extrapolations to χN=∞. Our calculations using the UCA allow direct comparisons to strong-segregation theory (SST), which is accepted as the χN=∞ limit of SCFT. A significant discrepancy between the SST and SCFT results indicate otherwise, suggesting that the present formulation of SST is incomplete.

  18. 76 FR 19124 - United States Section, Notice of Availability of a Draft Supplemental Environmental Assessment...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-06

    ... INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO United States Section... States Section, International Boundary and Water Commission, United States and Mexico (USIBWC). ACTION..., Environmental Management Division, United States Section, International Boundary and Water Commission; 4171 N...

  19. 3 CFR - Designation of Officers of the United States Section, International Boundary and Water Commission...

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ..., International Boundary and Water Commission, United States and Mexico To Act as the Commissioner of the United... States and Mexico To Act as the Commissioner of the United States Section Memorandum for the Commissioner of the United States Section, International Boundary and Water Commission, United States and Mexico...

  20. Computational analysis of amoeboid swimming at low Reynolds number.

    PubMed

    Wang, Qixuan; Othmer, Hans G

    2016-06-01

    Recent experimental work has shown that eukaryotic cells can swim in a fluid as well as crawl on a substrate. We investigate the swimming behavior of Dictyostelium discoideum  amoebae who swim by initiating traveling protrusions at the front that propagate rearward. In our model we prescribe the velocity at the surface of the swimming cell, and use techniques of complex analysis to develop 2D models that enable us to study the fluid-cell interaction. Shapes that approximate the protrusions used by Dictyostelium discoideum  can be generated via the Schwarz-Christoffel transformation, and the boundary-value problem that results for swimmers in the Stokes flow regime is then reduced to an integral equation on the boundary of the unit disk. We analyze the swimming characteristics of several varieties of swimming Dictyostelium discoideum  amoebae, and discuss how the slenderness of the cell body and the shapes of the protrusion effect the swimming of these cells. The results may provide guidance in designing low Reynolds number swimming models.

  1. Mineralogical and geochemical anomalous data of the K-T boundary samples

    NASA Technical Reports Server (NTRS)

    Miura, Y.; Shibya, G.; Imai, M.; Takaoka, N.; Saito, S.

    1988-01-01

    Cretaceous-Tertiary boundary problem has been discussed previously from the geological research, mainly by fossil changes. Although geochemical bulk data of Ir anomaly suggest the extraterrestrial origin of the K-T boundary, the exact formation process discussed mainly by mineralogical and geochemical study has been started recently, together with noble gas contents. The K-T boundary sample at Kawaruppu River, Hokkaido was collected, in order to compare with the typical K-T boundary samples of Bubbio, Italy, Stevns Klint, Denmark, and El Kef, Tunisia. The experimental data of the silicas and calcites in these K-T boundary samples were obtained from the X-ray unit-cell dimension (i.e., density), ESR signal and total linear absorption coefficient, as well as He and Ne contents. The K-T boundary samples are usually complex mixture of the terrestrial activities after the K-T boundary event. The mineralogical and geochemical anomalous data indicate special terrestrial atmosphere at the K-T boundary formation probably induced by asteroid impact, followed the many various terrestrial activities (especially the strong role of sea-water mixture, compared with terrestrial highland impact and impact craters in the other earth-type planetary bodies).

  2. Neural dynamics of feedforward and feedback processing in figure-ground segregation

    PubMed Central

    Layton, Oliver W.; Mingolla, Ennio; Yazdanbakhsh, Arash

    2014-01-01

    Determining whether a region belongs to the interior or exterior of a shape (figure-ground segregation) is a core competency of the primate brain, yet the underlying mechanisms are not well understood. Many models assume that figure-ground segregation occurs by assembling progressively more complex representations through feedforward connections, with feedback playing only a modulatory role. We present a dynamical model of figure-ground segregation in the primate ventral stream wherein feedback plays a crucial role in disambiguating a figure's interior and exterior. We introduce a processing strategy whereby jitter in RF center locations and variation in RF sizes is exploited to enhance and suppress neural activity inside and outside of figures, respectively. Feedforward projections emanate from units that model cells in V4 known to respond to the curvature of boundary contours (curved contour cells), and feedback projections from units predicted to exist in IT that strategically group neurons with different RF sizes and RF center locations (teardrop cells). Neurons (convex cells) that preferentially respond when centered on a figure dynamically balance feedforward (bottom-up) information and feedback from higher visual areas. The activation is enhanced when an interior portion of a figure is in the RF via feedback from units that detect closure in the boundary contours of a figure. Our model produces maximal activity along the medial axis of well-known figures with and without concavities, and inside algorithmically generated shapes. Our results suggest that the dynamic balancing of feedforward signals with the specific feedback mechanisms proposed by the model is crucial for figure-ground segregation. PMID:25346703

  3. Neural dynamics of feedforward and feedback processing in figure-ground segregation.

    PubMed

    Layton, Oliver W; Mingolla, Ennio; Yazdanbakhsh, Arash

    2014-01-01

    Determining whether a region belongs to the interior or exterior of a shape (figure-ground segregation) is a core competency of the primate brain, yet the underlying mechanisms are not well understood. Many models assume that figure-ground segregation occurs by assembling progressively more complex representations through feedforward connections, with feedback playing only a modulatory role. We present a dynamical model of figure-ground segregation in the primate ventral stream wherein feedback plays a crucial role in disambiguating a figure's interior and exterior. We introduce a processing strategy whereby jitter in RF center locations and variation in RF sizes is exploited to enhance and suppress neural activity inside and outside of figures, respectively. Feedforward projections emanate from units that model cells in V4 known to respond to the curvature of boundary contours (curved contour cells), and feedback projections from units predicted to exist in IT that strategically group neurons with different RF sizes and RF center locations (teardrop cells). Neurons (convex cells) that preferentially respond when centered on a figure dynamically balance feedforward (bottom-up) information and feedback from higher visual areas. The activation is enhanced when an interior portion of a figure is in the RF via feedback from units that detect closure in the boundary contours of a figure. Our model produces maximal activity along the medial axis of well-known figures with and without concavities, and inside algorithmically generated shapes. Our results suggest that the dynamic balancing of feedforward signals with the specific feedback mechanisms proposed by the model is crucial for figure-ground segregation.

  4. Geologic framework for the national assessment of carbon dioxide storage resources: Bighorn Basin, Wyoming and Montana: Chapter A in Geologic framework for the national assessment of carbon dioxide storage resources

    USGS Publications Warehouse

    Covault, Jacob A.; Buursink, Mark L.; Craddock, William H.; Merrill, Matthew D.; Blondes, Madalyn S.; Gosai, Mayur A.; Freeman, P.A.; Warwick, Peter D.; Corum, Margo D.

    2012-01-01

    This report identifies and contains geologic descriptions of twelve storage assessment units (SAUs) in six separate packages of sedimentary rocks within the Bighorn Basin of Wyoming and Montana and focuses on the particular characteristics, specified in the methodology, that influence the potential CO2 storage resource in those SAUs. Specific descriptions of the SAU boundaries as well as their sealing and reservoir units are included. Properties for each SAU such as depth to top, gross thickness, net porous thickness, porosity, permeability, groundwater quality, and structural reservoir traps are provided to illustrate geologic factors critical to the assessment. Although assessment results are not contained in this report, the geologic information included here will be employed, as specified in the methodology of earlier work, to calculate a statistical Monte Carlo-based distribution of potential storage space in the various SAUs. Figures in this report show SAU boundaries and cell maps of well penetrations through the sealing unit into the top of the storage formation. Wells sharing the same well borehole are treated as a single penetration. Cell maps show the number of penetrating wells within one square mile and are derived from interpretations of incompletely attributed well data, a digital compilation that is known not to include all drilling. The USGS does not expect to know the location of all wells and cannot guarantee the amount of drilling through specific formations in any given cell shown on cell maps.

  5. 75 FR 77662 - United States Section; Notice of Availability of a Final Environmental Assessment and Finding of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-13

    ... INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO United States Section... States Section, International Boundary and Water Commission, United States and Mexico (USIBWC). ACTION... States Section, International Boundary and Water Commission; 4171 N. Mesa, C-100; El Paso, Texas 79902...

  6. Transitional boundary layer in low-Prandtl-number convection at high Rayleigh number

    NASA Astrophysics Data System (ADS)

    Schumacher, Joerg; Bandaru, Vinodh; Pandey, Ambrish; Scheel, Janet

    2016-11-01

    The boundary layer structure of the velocity and temperature fields in turbulent Rayleigh-Bénard flows in closed cylindrical cells of unit aspect ratio is revisited from a transitional and turbulent viscous boundary layer perspective. When the Rayleigh number is large enough the boundary layer dynamics at the bottom and top plates can be separated into an impact region of downwelling plumes, an ejection region of upwelling plumes and an interior region (away from side walls) that is dominated by a shear flow of varying orientation. This interior plate region is compared here to classical wall-bounded shear flows. The working fluid is liquid mercury or liquid gallium at a Prandtl number of Pr = 0 . 021 for a range of Rayleigh numbers of 3 ×105 <= Ra <= 4 ×108 . The momentum transfer response to these system parameters generates a fluid flow in the closed cell with a macroscopic flow Reynolds number that takes values in the range of 1 . 8 ×103 <= Re <= 4 . 6 ×104 . It is shown that particularly the viscous boundary layers for the largest Ra are highly transitional and obey some properties that are directly comparable to transitional channel flows at friction Reynolds numbers below 100. This work is supported by the Deutsche Forschungsgemeinschaft.

  7. Mechanical Behaviour of 3D Multi-layer Braided Composites: Experimental, Numerical and Theoretical Study

    NASA Astrophysics Data System (ADS)

    Deng, Jian; Zhou, Guangming; Ji, Le; Wang, Xiaopei

    2017-12-01

    Mechanical properties and failure mechanisms of a newly designed 3D multi-layer braided composites are evaluated by experimental, numerical and theoretical studies. The microstructure of the composites is introduced. The unit cell technique is employed to address the periodic arrangement of the structure. The volume averaging method is used in theoretical solutions while FEM with reasonable periodic boundary conditions and meshing technique in numerical simulations. Experimental studies are also conducted to verify the feasibility of the proposed models. Predicted elastic properties agree well with the experimental data, indicating the feasibility of the proposed models. Numerical evaluation is more accurate than theoretical assessment. Deformations and stress distributions of the unit cell under tension shows displacement and traction continuity, guaranteeing the rationality of the applied periodic boundary conditions. Although compression and tension modulus are close, the compressive strength only reaches 70% of the tension strength. This indicates that the composites can be weakened in compressive loading. Additionally, by analysing the micrograph of fracture faces and strain-stress curves, a brittle failure mechanism is observed both in composites under tension and compression.

  8. Using stochastic cell division and death to probe minimal units of cellular replication

    NASA Astrophysics Data System (ADS)

    Chib, Savita; Das, Suman; Venkatesan, Soumya; Sai Narain Seshasayee, Aswin; Thattai, Mukund

    2018-03-01

    The invariant cell initiation mass measured in bacterial growth experiments has been interpreted as a minimal unit of cellular replication. Here we argue that the existence of such minimal units induces a coupling between the rates of stochastic cell division and death. To probe this coupling we tracked live and dead cells in Escherichia coli populations treated with a ribosome-targeting antibiotic. We find that the growth exponent from macroscopic cell growth or decay measurements can be represented as the difference of microscopic first-order cell division and death rates. The boundary between cell growth and decay, at which the number of live cells remains constant over time, occurs at the minimal inhibitory concentration (MIC) of the antibiotic. This state appears macroscopically static but is microscopically dynamic: division and death rates exactly cancel at MIC but each is remarkably high, reaching 60% of the antibiotic-free division rate. A stochastic model of cells as collections of minimal replicating units we term ‘widgets’ reproduces both steady-state and transient features of our experiments. Sub-cellular fluctuations of widget numbers stochastically drive each new daughter cell to one of two alternate fates, division or death. First-order division or death rates emerge as eigenvalues of a stationary Markov process, and can be expressed in terms of the widget’s molecular properties. High division and death rates at MIC arise due to low mean and high relative fluctuations of widget number. Isolating cells at the threshold of irreversible death might allow molecular characterization of this minimal replication unit.

  9. Geologic framework for the national assessment of carbon dioxide storage resources: Williston Basin, Central Montana Basins, and Montana Thrust Belt study areas: Chapter J in Geologic framework for the national assessment of carbon dioxide storage resources

    USGS Publications Warehouse

    Buursink, Marc L.; Merrill, Matthew D.; Craddock, William H.; Roberts-Ashby, Tina L.; Brennan, Sean T.; Blondes, Madalyn S.; Freeman, P.A.; Cahan, Steven M.; DeVera, Christina A.; Lohr, Celeste D.; Warwick, Peter D.; Corum, Margo D.

    2014-01-01

    Figures in this report show the study area boundaries along with the SAU extent and cell maps of well penetrations through sealing units into the top of the storage formations. The USGS does not necessarily know the location of all wells and cannot guarantee the full extent of drilling through specific formations in any given cell shown on the cell maps.

  10. Geologic framework for the national assessment of carbon dioxide storage resources: Arkoma Basin, Kansas Basins, and Midcontinent Rift Basin study areas: Chapter F in Geologic framework for the national assessment of carbon dioxide storage resources

    USGS Publications Warehouse

    Buursink, Marc L.; Craddock, William H.; Blondes, Madalyn S.; Freeman, Phillip A.; Cahan, Steven M.; DeVera, Christina A.; Lohr, Celeste D.

    2013-01-01

    2007 Energy Independence and Security Act (Public Law 110–140) directs the U.S. Geological Survey (USGS) to conduct a national assessment of potential geologic storage resources for carbon dioxide (CO2). The methodology used by the USGS for the national CO2 assessment follows that of previous USGS work. This methodology is non-economic and intended to be used at regional to subbasinal scales. This report identifies and contains geologic descriptions of three storage assessment units (SAUs) in Upper Cambrian to Mississippian sedimentary rocks within the Arkoma Basin study area, and two SAUs in Upper Cambrian to Mississippian sedimentary rocks within the Kansas Basins study area. The Arkoma Basin and Kansas Basins are adjacent with very similar geologic units; although the Kansas Basins area is larger, the Arkoma Basin is more structurally complex. The report focuses on the characteristics, specified in the methodology, that influence the potential CO2 storage resource in the SAUs. Specific descriptions of the SAU boundaries as well as their sealing and reservoir units are included. Properties for each SAU, such as depth to top, gross thickness, porosity, permeability, groundwater quality, and structural reservoir traps, are usually provided to illustrate geologic factors critical to the assessment. Although assessment results are not contained in this report, the geologic information herein was employed, as specified in the USGS methodology, to calculate a probabilistic distribution of potential storage resources in each SAU. The Midcontinent Rift Basin study area was not assessed, because no suitable storage formations meeting our size, depth, reservoir quality, and regional seal guidelines were found. Figures in this report show study area boundaries along with the SAU boundaries and cell maps of well penetrations through sealing units into the top of the storage formations. The cell maps show the number of penetrating wells within one-square mile and are derived from interpretations of incompletely attributed well data and from a digital compilation that is known not to include all drilling. The USGS does not expect to know the location of all wells and cannot guarantee the amount of drilling through specific formations in any given cell shown on the cell maps.

  11. 50 CFR 665.901 - Boundaries.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... § 665.901 Boundaries. The Marianas Trench Marine National Monument includes the following: (a) Islands Unit. The Islands Unit includes the waters and submerged lands of the three northernmost Mariana Islands (Farallon de Pajaros (Uracas), Maug, and Asuncion). The shoreward boundary of the Islands Unit is...

  12. 50 CFR 665.901 - Boundaries.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... § 665.901 Boundaries. The Marianas Trench Marine National Monument includes the following: (a) Islands Unit. The Islands Unit includes the waters and submerged lands of the three northernmost Mariana Islands (Farallon de Pajaros (Uracas), Maug, and Asuncion). The shoreward boundary of the Islands Unit is...

  13. Analysis of defect structure in silicon. Silicon sheet growth development for the large area silicon sheet task of the Low-Cost Solar array Project

    NASA Technical Reports Server (NTRS)

    Natesh, R.; Mena, M.; Plichta, M.; Smith, J. M.; Sellani, M. A.

    1982-01-01

    One hundred ninety-three silicon sheet samples, approximately 880 square centimeters, were analyzed for twin boundary density, dislocation pit density, and grain boundary length. One hundred fifteen of these samples were manufactured by a heat exchanger method, thirty-eight by edge defined film fed growth, twenty-three by the silicon on ceramics process, and ten by the dendritic web process. Seven solar cells were also step-etched to determine the internal defect distribution on these samples. Procedures were developed or the quantitative characterization of structural defects such as dislocation pits, precipitates, twin & grain boundaries using a QTM 720 quantitative image analyzing system interfaced with a PDP 11/03 mini computer. Characterization of the grain boundary length per unit area for polycrystalline samples was done by using the intercept method on an Olympus HBM Microscope.

  14. Quantification by aberration corrected (S)TEM of boundaries formed by symmetry breaking phase transformations.

    PubMed

    Schryvers, D; Salje, E K H; Nishida, M; De Backer, A; Idrissi, H; Van Aert, S

    2017-05-01

    The present contribution gives a review of recent quantification work of atom displacements, atom site occupations and level of crystallinity in various systems and based on aberration corrected HR(S)TEM images. Depending on the case studied, picometer range precisions for individual distances can be obtained, boundary widths at the unit cell level determined or statistical evolutions of fractions of the ordered areas calculated. In all of these cases, these quantitative measures imply new routes for the applications of the respective materials. Copyright © 2017 Elsevier B.V. All rights reserved.

  15. Controlling the width of self-assembled dysprosium silicide nanowires on the Si(001) surface.

    PubMed

    Cui, Y; Chung, J; Nogami, J

    2012-02-01

    We present STM data that show that it is possible to use a metal induced 2 × 7 reconstruction of Si(001) to narrow the width distribution of Dy silicide nanowires. This behavior is distinct from the effect of the 7 × 7 reconstruction on the Si(111) surface, where the 7 × 7 serves as a static template and the deposited metal avoids the unit cell boundaries on the substrate. In this case, the 2 × 7 is a dynamic template, and the nanowires nucleate at anti-phase boundaries between 2 × 7 reconstruction domains.

  16. A coupled analytical model for hydrostatic response of 1-3 piezocomposites.

    PubMed

    Rajapakse, Nimal; Chen, Yue

    2008-08-01

    This study presents a fully coupled analysis of a unit cell of a 1-3 piezocomposite under hydrostatic loading. The governing equations for coupled axisymmetric electroelastic field of a transversely isotropic piezoelectric medium and a transversely isotropic elastic medium are used. A reduced form of the analytical general solutions expressed in terms of series of modified Bessel functions of the first and second kind are used. The solution of the boundary-value problem corresponding to a unit cell is presented. The effective properties of a 1-3 piezocomposite are obtained for different fiber volume fractions, polymer and piezoceramic properties, and fiber aspect ratios. Comparisons with previously reported simplified and uncoupled models are made.

  17. Contraction and elongation: Mechanics underlying cell boundary deformations in epithelial tissue.

    PubMed

    Hara, Yusuke

    2017-06-01

    The cell-cell boundaries of epithelial cells form cellular frameworks at the apical side of tissues. Deformations in these boundaries, for example, boundary contraction and elongation, and the associated forces form the mechanical basis of epithelial tissue morphogenesis. In this review, using data from recent Drosophila studies on cell boundary contraction and elongation, I provide an overview of the mechanism underlying the bi-directional deformations in the epithelial cell boundary, that are sustained by biased accumulations of junctional and apico-medial non-muscle myosin II. Moreover, how the junctional tensions exist on cell boundaries in different boundary dynamics and morphologies are discussed. Finally, some future perspectives on how recent knowledge about single cell boundary-level mechanics will contribute to our understanding of epithelial tissue morphogenesis are discussed. © 2017 Japanese Society of Developmental Biologists.

  18. EPA Office of Water (OW): 12-digit Hydrologic Unit Boundaries of the United States

    EPA Pesticide Factsheets

    The Watershed Boundary Dataset (WBD) is a complete digital hydrologic unit national boundary layer that is at the Subwatershed (12-digit) level. It is composed of the watershed boundaries delineated by state agencies at the 1:24,000 scale. Please refer to the individual state metadata as the primary reference source. To access state specific metadata, go to the following link to view documentation created by agencies that performed the watershed delineation. This data set is a complete digital hydrologic unit boundary layer to the Subwatershed (12-digit) 6th level. This data set consists of geo-referenced digital data and associated attributes created in accordance with the FGDC Proposal, Version 1.0 - Federal Standards For Delineation of Hydrologic Unit Boundaries 3/01/02. Polygons are attributed with hydrologic unit codes for 4th level sub-basins, 5th level watersheds, 6th level subwatersheds, name, size, downstream hydrologic unit, type of watershed, non-contributing areas and flow modification. Arcs are attributed with the highest hydrologic unit code for each watershed, linesource and a metadata reference file.Please refer to the Metadata contact if you want access to the WBD national data set.

  19. Geologic framework for the national assessment of carbon dioxide storage resources: Hanna, Laramie, and Shirley Basins, Wyoming: Chapter C in Geologic framework for the national assessment of carbon dioxide storage resources

    USGS Publications Warehouse

    Merrill, Matthew D.; Covault, Jacob A.; Craddock, William H.; Slucher, Ernie R.; Warwick, Peter D.; Blondes, Madalyn S.; Gosai, Mayur A.; Freeman, P.A.; Cahan, Steven M.; Lohr, Celeste D.; Warwick, Peter D.; Corum, Margo D.

    2012-01-01

    The 2007 Energy Independence and Security Act (Public Law 110-140) directs the U.S. Geological Survey (USGS) to conduct a national assessment of potential geologic storage resources for carbon dioxide (CO2). The methodology used for the national CO2 assessment is non-economic and intended to be used at regional to subbasinal scales. This report identifies and contains geologic descriptions of twelve storage assessment units (SAUs) in six separate packages of sedimentary rock within the Hanna, Laramie, and Shirley Basins of Wyoming. It focuses on the particular characteristics, specified in the methodology, that influence the potential CO2 storage resource in those SAUs. Specific descriptions of SAU boundaries as well as their sealing and reservoir units are included. Properties for each SAU, such as depth to top, gross thickness, net porous thickness, porosity, permeability, groundwater quality, and structural reservoir traps are provided to illustrate geologic factors critical to the assessment. Although assessment results are not contained in this report, the geologic information included herein will be employed, as specified in the methodology, to calculate a statistical Monte Carlo-based distribution of potential storage space in the various SAUs. Figures in this report show SAU boundaries and cell maps of well penetrations through the sealing unit into the top of the storage formation. Cell maps show the number of penetrating wells within one square mile and are derived from interpretations of incompletely attributed well data in a digital compilation that is known not to include all drilling. The USGS does not expect to know the location of all wells and cannot guarantee the amount of drilling through specific formations in any given cell shown on cell maps.

  20. Geologic framework for the national assessment of carbon dioxide storage resources: Columbia Basin of Oregon, Washington, and Idaho, and the Western Oregon-Washington basins: Chapter D in Geologic framework for the national assessment of carbon dioxide storage resources

    USGS Publications Warehouse

    Covault, Jacob A.; Blondes, Madalyn S.; Cahan, Steven M.; DeVera, Christina A.; Freeman, P.A.; Lohr, Celeste D.; Warwick, Peter D.; Corum, Margo D.

    2013-01-01

    The 2007 Energy Independence and Security Act (Public Law 110–140) directs the U.S. Geological Survey (USGS) to conduct a national assessment of potential geologic storage resources for carbon dioxide (CO2). The methodology used by the USGS for the national CO2 assessment follows that of previous USGS work. The methodology is non-economic and intended to be used at regional to subbasinal scales. This report identifies and contains geologic descriptions of three storage assessment units (SAUs) in Eocene and Oligocene sedimentary rocks within the Columbia, Puget, Willapa, Astoria, Nehalem, and Willamette Basins of Oregon, Washington, and Idaho, and focuses on the characteristics, specified in the methodology, that influence the potential CO2 storage resource in those SAUs. Specific descriptions of the SAU boundaries as well as their sealing and reservoir units are included. Properties for each SAU, such as depth to top, gross thickness, porosity, permeability, groundwater quality, and structural reservoir traps, are provided to illustrate geologic factors critical to the assessment. The designated sealing unit in the Columbia Basin is tentatively chosen to be the ubiquitous and thick Miocene Columbia River Basalt Group. As a result of uncertainties regarding the seal integrity of the Columbia River Basalt Group, the SAUs were not quantitatively assessed. Figures in this report show SAU boundaries and cell maps of well penetrations through sealing units into the top of the storage formations. The cell maps show the number of penetrating wells within one square mile and are derived from interpretations of incompletely attributed well data, a digital compilation that is known not to include all drilling. The USGS does not expect to know the location of all wells and cannot guarantee the amount of drilling through specific formations in any given cell shown on the cell maps.

  1. International boundary experiences by the United Nations

    NASA Astrophysics Data System (ADS)

    Kagawa, A.

    2013-12-01

    Over the last few decades, the United Nations (UN) has been approached by Security Council and Member States on international boundary issues. The United Nations regards the adequate delimitation and demarcation of international boundaries as a very important element for the maintenance of peace and security in fragile post-conflict situations, establishment of friendly relationships and cross-border cooperation between States. This paper will present the main principles and framework the United Nations applies to support the process of international boundary delimitation and demarcation activities. The United Nations is involved in international boundary issues following the principle of impartiality and neutrality and its role as mediator. Since international boundary issues are multi-faceted, a range of expertise is required and the United Nations Secretariat is in a good position to provide diverse expertise within the multiple departments. Expertise in different departments ranging from legal, political, technical, administrative and logistical are mobilised in different ways to provide support to Member States depending on their specific needs. This presentation aims to highlight some of the international boundary projects that the United Nations Cartographic Section has been involved in order to provide the technical support to different boundary requirements as each international boundary issue requires specific focus and attention whether it be in preparation, delimitation, demarcation or management. Increasingly, the United Nations is leveraging geospatial technology to facilitate boundary delimitation and demarcation process between Member States. Through the presentation of the various case studies ranging from Iraq - Kuwait, Israel - Lebanon (Blue Line), Eritrea - Ethiopia, Cyprus (Green Line), Cameroon - Nigeria, Sudan - South Sudan, it will illustrate how geospatial technology is increasingly used to carry out the support. In having applied a range of geospatial solutions, some of the good practices that have been applied in preceding projects, but there have been challenges and limitations faced. However, these challenges need to be seen as an opportunity to improve the geospatial technology solutions in future international boundary projects. This presentation will also share the aspirations that the United Nations Cartographic Section has in becoming a facilitator in geospatial technical aspects related to international boundary issues as we increasingly develop our geospatial institutional knowledge base and expertise. The presentation will conclude by emphasizing the need for more collaboration between different actors dealing with geospatial technology on borderland issues in order to meet the main goal of the United Nations - to live and work together as "We the Peoples of the United Nations".

  2. Geometrically Flexible and Efficient Flow Analysis of High Speed Vehicles Via Domain Decomposition, Part 1: Unstructured-Grid Solver for High Speed Flows

    NASA Technical Reports Server (NTRS)

    White, Jeffery A.; Baurle, Robert A.; Passe, Bradley J.; Spiegel, Seth C.; Nishikawa, Hiroaki

    2017-01-01

    The ability to solve the equations governing the hypersonic turbulent flow of a real gas on unstructured grids using a spatially-elliptic, 2nd-order accurate, cell-centered, finite-volume method has been recently implemented in the VULCAN-CFD code. This paper describes the key numerical methods and techniques that were found to be required to robustly obtain accurate solutions to hypersonic flows on non-hex-dominant unstructured grids. The methods and techniques described include: an augmented stencil, weighted linear least squares, cell-average gradient method, a robust multidimensional cell-average gradient-limiter process that is consistent with the augmented stencil of the cell-average gradient method and a cell-face gradient method that contains a cell skewness sensitive damping term derived using hyperbolic diffusion based concepts. A data-parallel matrix-based symmetric Gauss-Seidel point-implicit scheme, used to solve the governing equations, is described and shown to be more robust and efficient than a matrix-free alternative. In addition, a y+ adaptive turbulent wall boundary condition methodology is presented. This boundary condition methodology is deigned to automatically switch between a solve-to-the-wall and a wall-matching-function boundary condition based on the local y+ of the 1st cell center off the wall. The aforementioned methods and techniques are then applied to a series of hypersonic and supersonic turbulent flat plate unit tests to examine the efficiency, robustness and convergence behavior of the implicit scheme and to determine the ability of the solve-to-the-wall and y+ adaptive turbulent wall boundary conditions to reproduce the turbulent law-of-the-wall. Finally, the thermally perfect, chemically frozen, Mach 7.8 turbulent flow of air through a scramjet flow-path is computed and compared with experimental data to demonstrate the robustness, accuracy and convergence behavior of the unstructured-grid solver for a realistic 3-D geometry on a non-hex-dominant grid.

  3. groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data.

    PubMed

    Chae, Minho; Danko, Charles G; Kraus, W Lee

    2015-07-16

    Global run-on coupled with deep sequencing (GRO-seq) provides extensive information on the location and function of coding and non-coding transcripts, including primary microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and enhancer RNAs (eRNAs), as well as yet undiscovered classes of transcripts. However, few computational tools tailored toward this new type of sequencing data are available, limiting the applicability of GRO-seq data for identifying novel transcription units. Here, we present groHMM, a computational tool in R, which defines the boundaries of transcription units de novo using a two state hidden-Markov model (HMM). A systematic comparison of the performance between groHMM and two existing peak-calling methods tuned to identify broad regions (SICER and HOMER) favorably supports our approach on existing GRO-seq data from MCF-7 breast cancer cells. To demonstrate the broader utility of our approach, we have used groHMM to annotate a diverse array of transcription units (i.e., primary transcripts) from four GRO-seq data sets derived from cells representing a variety of different human tissue types, including non-transformed cells (cardiomyocytes and lung fibroblasts) and transformed cells (LNCaP and MCF-7 cancer cells), as well as non-mammalian cells (from flies and worms). As an example of the utility of groHMM and its application to questions about the transcriptome, we show how groHMM can be used to analyze cell type-specific enhancers as defined by newly annotated enhancer transcripts. Our results show that groHMM can reveal new insights into cell type-specific transcription by identifying novel transcription units, and serve as a complete and useful tool for evaluating functional genomic elements in cells.

  4. 22 CFR 1101.2 - Definitions.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... and Mexico. (d) Commissioner means head of the United States Section, International Boundary and Water Commission, United States and Mexico. (e) Individual means a citizen of the United States or an alien...

  5. 22 CFR 1103.170 - Compliance procedures.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES... INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION § 1103.170... Mexico, United States Section, The Commons, Building C, Suite 310, 4171 North Mesa, El Paso, Texas 79902...

  6. 22 CFR 1101.2 - Definitions.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... and Mexico. (d) Commissioner means head of the United States Section, International Boundary and Water Commission, United States and Mexico. (e) Individual means a citizen of the United States or an alien...

  7. 22 CFR 1101.2 - Definitions.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... and Mexico. (d) Commissioner means head of the United States Section, International Boundary and Water Commission, United States and Mexico. (e) Individual means a citizen of the United States or an alien...

  8. 22 CFR 1101.2 - Definitions.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... and Mexico. (d) Commissioner means head of the United States Section, International Boundary and Water Commission, United States and Mexico. (e) Individual means a citizen of the United States or an alien...

  9. On the interaction of solutes with grain boundaries

    DOE PAGES

    Dingreville, Remi Philippe Michel; Berbenni, Stephane

    2015-11-01

    Solute segregation to grain boundaries is considered by modeling solute atoms as misfitting inclusions within a disclination structural unit model describing the grain boundary structure and its intrinsic stress field. The solute distribution around grain boundaries is described through Fermi–Dirac statistics of site occupancy. The susceptibility of hydrogen segregation to symmetric tilt grain boundaries is discussed in terms of the misorientation angle, the defect type characteristics at the grain boundary, temperature, and the prescribed bulk hydrogen fraction of occupied sites. Through this formalism, it is found that hydrogen trapping on grain boundaries clearly correlates with the grain boundary structure (i.e.more » type of structural unit composing the grain boundary), and the associated grain boundary misorientation. Specifically, for symmetric tilt grain boundaries about the [001] axis, grain boundaries composed of both B and C structural units show a lower segregation susceptibility than other grain boundaries. A direct correlation between the segregation susceptibility and the intrinsic net defect density is provided through the Frank–Bilby formalism. Moreover, the present formulation could prove to be a simple and useful model to identify classes of grain boundaries relevant to grain boundary engineering.« less

  10. On the interaction of solutes with grain boundaries

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Dingreville, Remi Philippe Michel; Berbenni, Stephane

    Solute segregation to grain boundaries is considered by modeling solute atoms as misfitting inclusions within a disclination structural unit model describing the grain boundary structure and its intrinsic stress field. The solute distribution around grain boundaries is described through Fermi–Dirac statistics of site occupancy. The susceptibility of hydrogen segregation to symmetric tilt grain boundaries is discussed in terms of the misorientation angle, the defect type characteristics at the grain boundary, temperature, and the prescribed bulk hydrogen fraction of occupied sites. Through this formalism, it is found that hydrogen trapping on grain boundaries clearly correlates with the grain boundary structure (i.e.more » type of structural unit composing the grain boundary), and the associated grain boundary misorientation. Specifically, for symmetric tilt grain boundaries about the [001] axis, grain boundaries composed of both B and C structural units show a lower segregation susceptibility than other grain boundaries. A direct correlation between the segregation susceptibility and the intrinsic net defect density is provided through the Frank–Bilby formalism. Moreover, the present formulation could prove to be a simple and useful model to identify classes of grain boundaries relevant to grain boundary engineering.« less

  11. Micromechanical models for textile structural composites

    NASA Technical Reports Server (NTRS)

    Marrey, Ramesh V.; Sankar, Bhavani V.

    1995-01-01

    The objective is to develop micromechanical models for predicting the stiffness and strength properties of textile composite materials. Two models are presented to predict the homogeneous elastic constants and coefficients of thermal expansion of a textile composite. The first model is based on rigorous finite element analysis of the textile composite unit-cell. Periodic boundary conditions are enforced between opposite faces of the unit-cell to simulate deformations accurately. The second model implements the selective averaging method (SAM), which is based on a judicious combination of stiffness and compliance averaging. For thin textile composites, both models can predict the plate stiffness coefficients and plate thermal coefficients. The finite element procedure is extended to compute the thermal residual microstresses, and to estimate the initial failure envelope for textile composites.

  12. Crystal structure and phase transitions of sodium potassium niobate perovskites

    NASA Astrophysics Data System (ADS)

    Tellier, J.; Malic, B.; Dkhil, B.; Jenko, D.; Cilensek, J.; Kosec, M.

    2009-02-01

    This paper presents the crystal structure and the phase transitions of K xNa 1- xNbO 3 (0.4 ≤ x ≤ 0.6). X-ray diffraction measurements were used to follow the change of the unit-cell parameters and the symmetry in the temperature range 100-800 K. At room temperature all the compositions exhibited a monoclinic metric of the unit cell with a small monoclinic distortion (90.32° ≤ β ≤ 90.34°). No major change of symmetry was evidenced in the investigated compositional range, which should be characteristic of the morphotropic phase-boundary region. With increasing temperature, the samples underwent first-order monoclinic-tetragonal and tetragonal-cubic transitions. Only the potassium-rich phases were rhombohedral at 100 K.

  13. A free boundary problem for steady small plaques in the artery and their stability

    NASA Astrophysics Data System (ADS)

    Friedman, Avner; Hao, Wenrui; Hu, Bei

    2015-08-01

    Atherosclerosis is a leading cause of death in the United States and worldwide; it originates from a plaque which builds up in the artery. In this paper, we consider a simplified model of plaque growth involving LDL and HDL cholesterols, macrophages and foam cells, which satisfy a coupled system of PDEs with a free boundary, the interface between the plaque and the blood flow. We prove that there exist small radially symmetric stationary plaques and establish a sharp condition that ensures their stability. We also determine necessary and sufficient conditions under which a small initial plaque will shrink and disappear, or persist for all times.

  14. Cell tracing reveals a dorsoventral lineage restriction plane in the mouse limb bud mesenchyme.

    PubMed

    Arques, Carlos G; Doohan, Roisin; Sharpe, James; Torres, Miguel

    2007-10-01

    Regionalization of embryonic fields into independent units of growth and patterning is a widespread strategy during metazoan development. Compartments represent a particular instance of this regionalization, in which unit coherence is maintained by cell lineage restriction between adjacent regions. Lineage compartments have been described during insect and vertebrate development. Two common characteristics of the compartments described so far are their occurrence in epithelial structures and the presence of signaling regions at compartment borders. Whereas Drosophila compartmental organization represents a background subdivision of embryonic fields that is not necessarily related to anatomical structures, vertebrate compartment borders described thus far coincide with, or anticipate, anatomical or cell-type discontinuities. Here, we describe a general method for clonal analysis in the mouse and use it to determine the topology of clone distribution along the three limb axes. We identify a lineage restriction boundary at the limb mesenchyme dorsoventral border that is unrelated to any anatomical discontinuity, and whose lineage restriction border is not obviously associated with any signaling center. This restriction is the first example in vertebrates of a mechanism of primordium subdivision unrelated to anatomical boundaries. Furthermore, this is the first lineage compartment described within a mesenchymal structure in any organism, suggesting that lineage restrictions are fundamental not only for epithelial structures, but also for mesenchymal field patterning. No lineage compartmentalization was found along the proximodistal or anteroposterior axes, indicating that patterning along these axes does not involve restriction of cell dispersion at specific axial positions.

  15. 22 CFR 1104.2 - Definitions.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... Commission, United States and Mexico, and his delegate. (d) Public lands means lands to which the United... Boundary and Water Commission, United States and Mexico. (e) Indian tribe as defined in the Act means any...

  16. Experimental observation of negative effective gravity in water waves.

    PubMed

    Hu, Xinhua; Yang, Jiong; Zi, Jian; Chan, C T; Ho, Kai-Ming

    2013-01-01

    The gravity of Earth is responsible for the formation of water waves and usually difficult to change. Although negative effective gravity was recently predicted theoretically in water waves, it has not yet been observed in experiments and remains a mathematical curiosity which is difficult to understand. Here we experimentally demonstrate that close to the resonant frequency of purposely-designed resonating units, negative effective gravity can occur for water waves passing through an array of resonators composing of bottom-mounted split tubes, resulting in the prohibition of water wave propagation. It is found that when negative gravity occurs, the averaged displacement of water surface in a unit cell of the array has a phase difference of π to that along the boundary of the unit cell, consistent with theoretical predictions. Our results provide a mechanism to block water waves and may find applications in wave energy conversion and coastal protection.

  17. Experimental Observation of Negative Effective Gravity in Water Waves

    PubMed Central

    Hu, Xinhua; Yang, Jiong; Zi, Jian; Chan, C. T.; Ho, Kai-Ming

    2013-01-01

    The gravity of Earth is responsible for the formation of water waves and usually difficult to change. Although negative effective gravity was recently predicted theoretically in water waves, it has not yet been observed in experiments and remains a mathematical curiosity which is difficult to understand. Here we experimentally demonstrate that close to the resonant frequency of purposely-designed resonating units, negative effective gravity can occur for water waves passing through an array of resonators composing of bottom-mounted split tubes, resulting in the prohibition of water wave propagation. It is found that when negative gravity occurs, the averaged displacement of water surface in a unit cell of the array has a phase difference of π to that along the boundary of the unit cell, consistent with theoretical predictions. Our results provide a mechanism to block water waves and may find applications in wave energy conversion and coastal protection. PMID:23715132

  18. A three-dimensional polyhedral unit model for grain boundary structure in fcc metals

    NASA Astrophysics Data System (ADS)

    Banadaki, Arash Dehghan; Patala, Srikanth

    2017-03-01

    One of the biggest challenges in developing truly bottom-up models for the performance of polycrystalline materials is the lack of robust quantitative structure-property relationships for interfaces. As a first step in analyzing such relationships, we present a polyhedral unit model to classify the geometrical nature of atomic packing along grain boundaries. While the atomic structure in disordered systems has been a topic of interest for many decades, geometrical analyses of grain boundaries has proven to be particularly challenging because of the wide range of structures that are possible depending on the underlying macroscopic crystallographic character. In this article, we propose an algorithm that can partition the atomic structure into a connected array of three-dimensional polyhedra, and thus, present a three-dimensional polyhedral unit model for grain boundaries. A point-pattern matching algorithm is also provided for quantifying the distortions of the observed grain boundary polyhedral units. The polyhedral unit model is robust enough to capture the structure of high-Σ, mixed character interfaces and, hence, provides a geometric tool for comparing grain boundary structures across the five-parameter crystallographic phase-space. Since the obtained polyhedral units circumscribe the voids present in the structure, such a description provides valuable information concerning segregation sites within the grain boundary. We anticipate that this technique will serve as a powerful tool in the analysis of grain boundary structure. The polyhedral unit model is also applicable to a wide array of material systems as the proposed algorithm is not limited by the underlying lattice structure.

  19. Adaptive radial basis function mesh deformation using data reduction

    NASA Astrophysics Data System (ADS)

    Gillebaart, T.; Blom, D. S.; van Zuijlen, A. H.; Bijl, H.

    2016-09-01

    Radial Basis Function (RBF) mesh deformation is one of the most robust mesh deformation methods available. Using the greedy (data reduction) method in combination with an explicit boundary correction, results in an efficient method as shown in literature. However, to ensure the method remains robust, two issues are addressed: 1) how to ensure that the set of control points remains an accurate representation of the geometry in time and 2) how to use/automate the explicit boundary correction, while ensuring a high mesh quality. In this paper, we propose an adaptive RBF mesh deformation method, which ensures the set of control points always represents the geometry/displacement up to a certain (user-specified) criteria, by keeping track of the boundary error throughout the simulation and re-selecting when needed. Opposed to the unit displacement and prescribed displacement selection methods, the adaptive method is more robust, user-independent and efficient, for the cases considered. Secondly, the analysis of a single high aspect ratio cell is used to formulate an equation for the correction radius needed, depending on the characteristics of the correction function used, maximum aspect ratio, minimum first cell height and boundary error. Based on the analysis two new radial basis correction functions are derived and proposed. This proposed automated procedure is verified while varying the correction function, Reynolds number (and thus first cell height and aspect ratio) and boundary error. Finally, the parallel efficiency is studied for the two adaptive methods, unit displacement and prescribed displacement for both the CPU as well as the memory formulation with a 2D oscillating and translating airfoil with oscillating flap, a 3D flexible locally deforming tube and deforming wind turbine blade. Generally, the memory formulation requires less work (due to the large amount of work required for evaluating RBF's), but the parallel efficiency reduces due to the limited bandwidth available between CPU and memory. In terms of parallel efficiency/scaling the different studied methods perform similarly, with the greedy algorithm being the bottleneck. In terms of absolute computational work the adaptive methods are better for the cases studied due to their more efficient selection of the control points. By automating most of the RBF mesh deformation, a robust, efficient and almost user-independent mesh deformation method is presented.

  20. Numerical groundwater-flow model of the Minnelusa and Madison hydrogeologic units in the Rapid City area, South Dakota

    USGS Publications Warehouse

    Putnam, Larry D.; Long, Andrew J.

    2009-01-01

    The city of Rapid City and other water users in the Rapid City area obtain water supplies from the Minnelusa and Madison aquifers, which are contained in the Minnelusa and Madison hydrogeologic units. A numerical groundwater-flow model of the Minnelusa and Madison hydrogeologic units in the Rapid City area was developed to synthesize estimates of water-budget components and hydraulic properties, and to provide a tool to analyze the effect of additional stress on water-level altitudes within the aquifers and on discharge to springs. This report, prepared in cooperation with the city of Rapid City, documents a numerical groundwater-flow model of the Minnelusa and Madison hydrogeologic units for the 1,000-square-mile study area that includes Rapid City and the surrounding area. Water-table conditions generally exist in outcrop areas of the Minnelusa and Madison hydrogeologic units, which form generally concentric rings that surround the Precambrian core of the uplifted Black Hills. Confined conditions exist east of the water-table areas in the study area. The Minnelusa hydrogeologic unit is 375 to 800 feet (ft) thick in the study area with the more permeable upper part containing predominantly sandstone and the less permeable lower part containing more shale and limestone than the upper part. Shale units in the lower part generally impede flow between the Minnelusa hydrogeologic unit and the underlying Madison hydrogeologic unit; however, fracturing and weathering may result in hydraulic connections in some areas. The Madison hydrogeologic unit is composed of limestone and dolomite that is about 250 to 610 ft thick in the study area, and the upper part contains substantial secondary permeability from solution openings and fractures. Recharge to the Minnelusa and Madison hydrogeologic units is from streamflow loss where streams cross the outcrop and from infiltration of precipitation on the outcrops (areal recharge). MODFLOW-2000, a finite-difference groundwater-flow model, was used to simulate flow in the Minnelusa and Madison hydrogeologic units with five layers. Layer 1 represented the fractured sandstone layers in the upper 250 ft of the Minnelusa hydrogeologic unit, and layer 2 represented the lower part of the Minnelusa hydrogeologic unit. Layer 3 represented the upper 150 ft of the Madison hydrogeologic unit, and layer 4 represented the less permeable lower part. Layer 5 represented an approximation of the underlying Deadwood aquifer to simulate upward flow to the Madison hydrogeologic unit. The finite-difference grid, oriented 23 degrees counterclockwise, included 221 rows and 169 columns with a square cell size of 492.1 ft in the detailed study area that surrounded Rapid City. The northern and southern boundaries for layers 1-4 were represented as no-flow boundaries, and the boundary on the east was represented with head-dependent flow cells. Streamflow recharge was represented with specified-flow cells, and areal recharge to layers 1-4 was represented with a specified-flux boundary. Calibration of the model was accomplished by two simulations: (1) steady-state simulation of average conditions for water years 1988-97 and (2) transient simulations of water years 1988-97 divided into twenty 6-month stress periods. Flow-system components represented in the model include recharge, discharge, and hydraulic properties. The steady-state streamflow recharge rate was 42.2 cubic feet per second (ft3/s), and transient streamflow recharge rates ranged from 14.1 to 102.2 ft3/s. The steady-state areal recharge rate was 20.9 ft3/s, and transient areal recharge rates ranged from 1.1 to 98.4 ft3/s. The upward flow rate from the Deadwood aquifer to the Madison hydrogeologic unit was 6.3 ft3/s. Discharge included springflow, water use, flow to overlying units, and regional outflow. The estimated steady-state springflow of 32.8 ft3/s from seven springs was similar to the simulated springflow of 31.6 ft3/s, which included 20.5 ft3

  1. Electrolyte chemistry control in electrodialysis processing

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hayes, Thomas D.; Severin, Blaine F.

    Methods for controlling electrolyte chemistry in electrodialysis units having an anode and a cathode each in an electrolyte of a selected concentration and a membrane stack disposed therebetween. The membrane stack includes pairs of cationic selective and anionic membranes to segregate increasingly dilute salts streams from concentrated salts stream. Electrolyte chemistry control is via use of at least one of following techniques: a single calcium exclusionary cationic selective membrane at a cathode cell boundary, an exclusionary membrane configured as a hydraulically isolated scavenger cell, a multivalent scavenger co-electrolyte and combinations thereof.

  2. A local difference in Hedgehog signal transduction increases mechanical cell bond tension and biases cell intercalations along the Drosophila anteroposterior compartment boundary.

    PubMed

    Rudolf, Katrin; Umetsu, Daiki; Aliee, Maryam; Sui, Liyuan; Jülicher, Frank; Dahmann, Christian

    2015-11-15

    Tissue organization requires the interplay between biochemical signaling and cellular force generation. The formation of straight boundaries separating cells with different fates into compartments is important for growth and patterning during tissue development. In the developing Drosophila wing disc, maintenance of the straight anteroposterior (AP) compartment boundary involves a local increase in mechanical tension at cell bonds along the boundary. The biochemical signals that regulate mechanical tension along the AP boundary, however, remain unknown. Here, we show that a local difference in Hedgehog signal transduction activity between anterior and posterior cells is necessary and sufficient to increase mechanical tension along the AP boundary. This difference in Hedgehog signal transduction is also required to bias cell rearrangements during cell intercalations to keep the characteristic straight shape of the AP boundary. Moreover, severing cell bonds along the AP boundary does not reduce tension at neighboring bonds, implying that active mechanical tension is upregulated, cell bond by cell bond. Finally, differences in the expression of the homeodomain-containing protein Engrailed also contribute to the straight shape of the AP boundary, independently of Hedgehog signal transduction and without modulating cell bond tension. Our data reveal a novel link between local differences in Hedgehog signal transduction and a local increase in active mechanical tension of cell bonds that biases junctional rearrangements. The large-scale shape of the AP boundary thus emerges from biochemical signals inducing patterns of active tension on cell bonds. © 2015. Published by The Company of Biologists Ltd.

  3. 22 CFR 1103.101 - Purpose.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Purpose. 1103.101 Section 1103.101 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION § 1103.101 Purpose. This...

  4. 22 CFR 1103.140 - Employment.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Employment. 1103.140 Section 1103.140 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION § 1103.140 Employment. No...

  5. 22 CFR 1103.110 - Self-evaluation.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Self-evaluation. 1103.110 Section 1103.110 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES... INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION § 1103.110 Self...

  6. 22 CFR 1103.111 - Notice.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Notice. 1103.111 Section 1103.111 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION § 1103.111 Notice. The...

  7. 22 CFR 1103.102 - Application.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Application. 1103.102 Section 1103.102 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION... BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION § 1103.102 Application. This...

  8. Evidence of biological activity in Hawaiian subsurface basalts

    NASA Astrophysics Data System (ADS)

    Fisk, M. R.; Storrie-Lombardi, M. C.; Douglas, S.; Popa, R.; McDonald, G.; di Meo-Savoie, C.

    2003-12-01

    The Hawaii Scientific Drilling Program (HSDP) cored and recovered igneous rock from the surface to a depth of 3109 m near Hilo, Hawaii. Much of the deeper parts of the hole is composed of hyaloclastite (fractured basalt glass that has been cemented in situ with secondary minerals). Some hyaloclastite units have been altered in a manner attributed to microorganisms in volcanic rocks. Samples from one such unit (1336 m to 1404 m below sea level) were examined to test the hypothesis that the alteration was associated with microorganisms. Deep ultraviolet native fluorescence and resonance Raman spectroscopy indicate that nucleic acids and aromatic amino acids are present in clay inside spherical cavities (vesicles) within basalt glass. Chemical mapping shows that phosphorus and carbon were enriched at the boundary between the clay and volcanic glass of the vesicles. Environmental scanning electron microscopy (ESEM) reveals two to three micrometer coccoid structures in these same boundaries. ESEM-linked energy dispersive spectroscopy demonstrated carbon, phosphorous, chloride, and magnesium in these bodies significantly differing from unoccupied neighboring regions of basalt. These observations taken together indicate the presence of microorganisms at the boundary between primary volcanic glass and secondary clays. Amino acids and nucleic acids were extracted from bulk samples of the hyaloclastite unit. Amino acid abundance was low, and if the amino acids are derived from microorganisms in the rock, then there are less than 100,000 cells per gram of rock. Most nucleic acid sequences extracted from the unit were closely related to sequences of Crenarchaeota collected from the subsurface of the ocean floor.

  9. Repeated unit cell (RUC) approach for pure bending analysis of coronary stents.

    PubMed

    Ju, Feng; Xia, Zihui; Zhou, Chuwei

    2008-08-01

    Flexibility is one of the key properties of coronary stents. The objective of this paper is to characterize the bending behaviour of stents through finite element analysis with repeated unit cell (RUC) models. General periodic boundary conditions for the RUC under the pure bending condition are formulated. It is found that the proposed RUC approach can provide accurate numerical results of bending behaviour of stents with much less computational costs. Bending stiffness, post-yield bending behaviour and the relationship between moment and bending curvature are investigated for Palmaz-Schatz stents and stents with the V- and S-shaped links. It is found that the effect of link geometry on the bending behaviour of stent is significant. The behaviour of stents subjected to cyclic bending is also investigated.

  10. Interactive boundary delineation of agricultural lands using graphics workstations

    NASA Technical Reports Server (NTRS)

    Cheng, Thomas D.; Angelici, Gary L.; Slye, Robert E.; Ma, Matt

    1992-01-01

    A review is presented of the computer-assisted stratification and sampling (CASS) system developed to delineate the boundaries of sample units for survey procedures. CASS stratifies the sampling units by land-cover and land-use type, employing image-processing software and hardware. This procedure generates coverage areas and the boundaries of stratified sampling units that are utilized for subsequent sampling procedures from which agricultural statistics are developed.

  11. A compilation of subsea energy and mineral resources of the United States including its possessions and Trust Territory of the Pacific Islands

    USGS Publications Warehouse

    Holser, A.F.; Rowland, R.W.; Goud, M.R.

    1981-01-01

    The United States has not resolved most of its Continental Shelf boundaries with other states.  The lines on this map are only approximate, and they do no necessarily reflect the positions or views of the United States with respect to those boundaries.  Sources of data for the boundaries and the resource information shown on the map are enumerated below.

  12. 22 CFR 1103.130 - General prohibitions against discrimination.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    .... 1103.130 Section 1103.130 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION ENFORCEMENT OF NONDISCRIMINATION ON THE BASIS OF HANDICAP IN PROGRAMS OR ACTIVITIES CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO...

  13. 22 CFR 1103.149 - Program accessibility: Discrimination prohibited.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    .... 1103.149 Section 1103.149 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION ENFORCEMENT OF NONDISCRIMINATION ON THE BASIS OF HANDICAP IN PROGRAMS OR ACTIVITIES CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO...

  14. Influence of incoherent twin boundaries on the electrical properties of β-Ga2O3 layers homoepitaxially grown by metal-organic vapor phase epitaxy

    NASA Astrophysics Data System (ADS)

    Fiedler, A.; Schewski, R.; Baldini, M.; Galazka, Z.; Wagner, G.; Albrecht, M.; Irmscher, K.

    2017-10-01

    We present a quantitative model that addresses the influence of incoherent twin boundaries on the electrical properties in β-Ga2O3. This model can explain the mobility collapse below a threshold electron concentration of 1 × 1018 cm-3 as well as partly the low doping efficiency in β-Ga2O3 layers grown homoepitaxially by metal-organic vapor phase epitaxy on (100) substrates of only slight off-orientation. A structural analysis by transmission electron microscopy (TEM) reveals a high density of twin lamellae in these layers. In contrast to the coherent twin boundaries parallel to the (100) plane, the lateral incoherent twin boundaries exhibit one dangling bond per unit cell that acts as an acceptor-like electron trap. Since the twin lamellae are thin, we consider the incoherent twin boundaries to be line defects with a density of 1011-1012 cm-2 as determined by TEM. We estimate the influence of the incoherent twin boundaries on the electrical transport properties by adapting Read's model of charged dislocations. Our calculations quantitatively confirm that the mobility reduction and collapse as well as partly the compensation are due to the presence of twin lamellae.

  15. Geologic framework for the national assessment of carbon dioxide storage resources

    USGS Publications Warehouse

    Warwick, Peter D.; Corum, Margo D.

    2012-01-01

    The 2007 Energy Independence and Security Act (Public Law 110–140) directs the U.S. Geological Survey (USGS) to conduct a national assessment of potential geologic storage resources for carbon dioxide (CO2) and to consult with other Federal and State agencies to locate the pertinent geological data needed for the assessment. The geologic sequestration of CO2 is one possible way to mitigate its effects on climate change. The methodology used for the national CO2 assessment (Open-File Report 2010-1127; http://pubs.usgs.gov/of/2010/1127/) is based on previous USGS probabilistic oil and gas assessment methodologies. The methodology is non-economic and intended to be used at regional to subbasinal scales. The operational unit of the assessment is a storage assessment unit (SAU), composed of a porous storage formation with fluid flow and an overlying sealing unit with low permeability. Assessments are conducted at the SAU level and are aggregated to basinal and regional results. This report identifies and contains geologic descriptions of SAUs in separate packages of sedimentary rocks within the assessed basin and focuses on the particular characteristics, specified in the methodology, that influence the potential CO2 storage resource in those SAUs. Specific descriptions of the SAU boundaries as well as their sealing and reservoir units are included. Properties for each SAU such as depth to top, gross thickness, net porous thickness, porosity, permeability, groundwater quality, and structural reservoir traps are provided to illustrate geologic factors critical to the assessment. Although assessment results are not contained in this report, the geologic information included here will be employed, as specified in the methodology, to calculate a statistical Monte Carlo-based distribution of potential storage space in the various SAUs. Figures in this report show SAU boundaries and cell maps of well penetrations through the sealing unit into the top of the storage formation. Wells sharing the same well borehole are treated as a single penetration. Cell maps show the number of penetrating wells within one square mile and are derived from interpretations of incompletely attributed well data, a digital compilation that is known not to include all drilling. The USGS does not expect to know the location of all wells and cannot guarantee the amount of drilling through specific formations in any given cell shown on cell maps.

  16. 22 CFR 1103.141-1103.148 - [Reserved

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true [Reserved] 1103.141-1103.148 Section 1103.141-1103.148 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO... CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION...

  17. 22 CFR 1103.151 - Program accessibility: New construction and alterations.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... alterations. 1103.151 Section 1103.151 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION ENFORCEMENT OF NONDISCRIMINATION ON THE BASIS OF HANDICAP IN PROGRAMS OR ACTIVITIES CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO...

  18. 22 CFR 1103.104-1103.109 - [Reserved

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true [Reserved] 1103.104-1103.109 Section 1103.104-1103.109 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO... CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION...

  19. 22 CFR 1103.131-1103.139 - [Reserved

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true [Reserved] 1103.131-1103.139 Section 1103.131-1103.139 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO... CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION...

  20. 22 CFR 1103.161-1103.169 - [Reserved

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true [Reserved] 1103.161-1103.169 Section 1103.161-1103.169 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO... CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION...

  1. 22 CFR 1103.152-1103.159 - [Reserved

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true [Reserved] 1103.152-1103.159 Section 1103.152-1103.159 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO... CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION...

  2. 22 CFR 1103.112-1103.129 - [Reserved

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true [Reserved] 1103.112-1103.129 Section 1103.112-1103.129 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO... CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION...

  3. 22 CFR 1103.171-1103.999 - [Reserved

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true [Reserved] 1103.171-1103.999 Section 1103.171-1103.999 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO... CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION...

  4. 75 FR 7522 - United States Section; Notice of Availability of the Final Environmental Impact Statement, Flood...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-19

    ... Final EIS: Biological resources, cultural resources, water resources, land use, socioeconomic resources... INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO United States Section..., International Boundary and Water Commission (USIBWC). ACTION: Notice of Availability of Final Environmental...

  5. The Selector Gene apterous and Notch Are Required to Locally Increase Mechanical Cell Bond Tension at the Drosophila Dorsoventral Compartment Boundary

    PubMed Central

    Michel, Marcus; Aliee, Maryam; Rudolf, Katrin; Bialas, Lisa; Jülicher, Frank; Dahmann, Christian

    2016-01-01

    The separation of cells with distinct fates and functions is important for tissue and organ formation during animal development. Regions of different fates within tissues are often separated from another along straight boundaries. These compartment boundaries play a crucial role in tissue patterning and growth by stably positioning organizers. In Drosophila, the wing imaginal disc is subdivided into a dorsal and a ventral compartment. Cells of the dorsal, but not ventral, compartment express the selector gene apterous. Apterous expression sets in motion a gene regulatory cascade that leads to the activation of Notch signaling in a few cell rows on either side of the dorsoventral compartment boundary. Both Notch and apterous mutant clones disturb the separation of dorsal and ventral cells. Maintenance of the straight shape of the dorsoventral boundary involves a local increase in mechanical tension at cell bonds along the boundary. The mechanisms by which cell bond tension is locally increased however remain unknown. Here we use a combination of laser ablation of cell bonds, quantitative image analysis, and genetic mutants to show that Notch and Apterous are required to increase cell bond tension along the dorsoventral compartment boundary. Moreover, clonal expression of the Apterous target gene capricious results in cell separation and increased cell bond tension at the clone borders. Finally, using a vertex model to simulate tissue growth, we find that an increase in cell bond tension at the borders of cell clones, but not throughout the cell clone, can lead to cell separation. We conclude that Apterous and Notch maintain the characteristic straight shape of the dorsoventral compartment boundary by locally increasing cell bond tension. PMID:27552097

  6. Negative extensibility metamaterials: phase diagram calculation

    NASA Astrophysics Data System (ADS)

    Klein, John T.; Karpov, Eduard G.

    2017-12-01

    Negative extensibility metamaterials are able to contract against the line of increasing external tension. A bistable unit cell exhibits several nonlinear mechanical behaviors including the negative extensibility response. Here, an exact form of the total mechanical potential is used based on engineering strain measure. The mechanical response is a function of the system parameters that specify unit cell dimensions and member stiffnesses. A phase diagram is calculated, which maps the response to regions in the diagram using the system parameters as the coordinate axes. Boundary lines pinpoint the onset of a particular mechanical response. Contour lines allow various material properties to be fine-tuned. Analogous to thermodynamic phase diagrams, there exist singular "triple points" which simultaneously satisfy conditions for three response types. The discussion ends with a brief statement about how thermodynamic phase diagrams differ from the phase diagram in this paper.

  7. Method for facilitating the introduction of material into cells

    DOEpatents

    Holcomb, David E.; McKnight, Timothy E.

    2000-01-01

    The present invention is a method for creating a localized disruption within a boundary of a cell or structure by exposing a boundary of a cell or structure to a set of energetically charged particles while regulating the energy of the charged particles so that the charged particles have an amount of kinetic energy sufficient to create a localized disruption within an area of the boundary of the cell or structure, then upon creation of the localized disruption, the amount of kinetic energy decreases to an amount insufficient to create further damage within the cell or structure beyond the boundary. The present invention is also a method for facilitating the introduction of a material into a cell or structure using the same methodology then further exciting the area of the boundary of the cell or structure where the localized disruption was created so to create a localized temporary opening within the boundary then further introducing the material through the temporary opening into the cell or structure.

  8. Cell boundary fault detection system

    DOEpatents

    Archer, Charles Jens [Rochester, MN; Pinnow, Kurt Walter [Rochester, MN; Ratterman, Joseph D [Rochester, MN; Smith, Brian Edward [Rochester, MN

    2009-05-05

    A method determines a nodal fault along the boundary, or face, of a computing cell. Nodes on adjacent cell boundaries communicate with each other, and the communications are analyzed to determine if a node or connection is faulty.

  9. 76 FR 69283 - Notice of Availability of the Final Supplemental Environmental Assessment and Finding of No...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-08

    ... INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO Notice of Availability of..., International Boundary and Water Commission, United States and Mexico (USIBWC). ACTION: Notice of Availability... Council on Environmental Quality Final Regulations (40 CFR Parts 1500 through 1508), and the United States...

  10. A conceptual model of ground-water flow in the eastern Snake River Plain aquifer at the Idaho National Laboratory and vicinity with implications for contaminant transport

    USGS Publications Warehouse

    Ackerman, Daniel J.; Rattray, Gordon W.; Rousseau, Joseph P.; Davis, Linda C.; Orr, Brennon R.

    2006-01-01

    Ground-water flow in the west-central part of the eastern Snake River Plain aquifer is described in a conceptual model that will be used in numerical simulations to evaluate contaminant transport at the Idaho National Laboratory (INL) and vicinity. The model encompasses an area of 1,940 square miles (mi2) and includes most of the 890 mi2 of the INL. A 50-year history of waste disposal associated with research activities at the INL has resulted in measurable concentrations of waste contaminants in the aquifer. A thorough understanding of the fate and movement of these contaminants in the subsurface is needed by the U.S. Department of Energy to minimize the effect that contaminated ground water may have on the region and to plan effectively for remediation. Three hydrogeologic units were used to represent the complex stratigraphy of the aquifer in the model area. Collectively, these hydrogeologic units include at least 65 basalt-flow groups, 5 andesite-flow groups, and 61 sedimentary interbeds. Three rhyolite domes in the model area extend deep enough to penetrate the aquifer. The rhyolite domes are represented in the conceptual model as low permeability, vertical pluglike masses, and are not included as part of the three primary hydrogeologic units. Broad differences in lithology and large variations in hydraulic properties allowed the heterogeneous, anisotropic basalt-flow groups, andesite-flow groups, and sedimentary interbeds to be grouped into three hydrogeologic units that are conceptually homogeneous and anisotropic. Younger rocks, primarily thin, densely fractured basalt, compose hydrogeologic unit 1; younger rocks, primarily of massive, less densely fractured basalt, compose hydrogeologic unit 2; and intermediate-age rocks, primarily of slightly-to-moderately altered, fractured basalt, compose hydrogeologic unit 3. Differences in hydraulic properties among adjacent hydrogeologic units result in much of the large-scale heterogeneity and anisotropy of the aquifer in the model area, and differences in horizontal and vertical hydraulic conductivity in individual hydrogeologic units result in much of the small-scale heterogeneity and anisotropy of the aquifer in the model area. The inferred three-dimensional geometry of the aquifer in the model area is very irregular. Its thickness generally increases from north to south and from west to east and is greatest south of the INL. The interpreted distribution of older rocks that underlie the aquifer indicates large changes in saturated thickness across the model area. The boundaries of the model include physical and artificial boundaries, and ground-water flows across the boundaries may be temporally constant or variable and spatially uniform or nonuniform. Physical boundaries include the water-table boundary, base of the aquifer, and northwest mountain-front boundary. Artificial boundaries include the northeast boundary, southeast-flowline boundary, and southwest boundary. Water flows into the model area as (1) underflow (1,225 cubic feet per second (ft3/s)) from the regional aquifer (northeast boundary-constant and nonuniform), (2) underflow (695 ft3/s) from the tributary valleys and mountain fronts (northwest boundary-constant and nonuniform), (3) precipitation recharge (70 ft3/s) (constant and uniform), streamflow-infiltration recharge (95 ft3/s) (variable and nonuniform), wastewater return flows (6 ft3/s) (variable and nonuniform), and irrigation-infiltration recharge (24 ft3/s) (variable and nonuniform) across the water table (water-table boundary-variable and nonuniform), and (4) upward flow across the base of the aquifer (44 ft3/s) (uniform and constant). The southeast-flowline boundary is represented as a no-flow boundary. Water flows out of the model area as underflow (2,037 ft3/s) to the regional aquifer (southwest boundary-variable and nonuniform) and as ground-water withdrawals (45 ft3/s) (water table boundary-variable and nonuniform). Ground-water flow i

  11. Cell boundary fault detection system

    DOEpatents

    Archer, Charles Jens [Rochester, MN; Pinnow, Kurt Walter [Rochester, MN; Ratterman, Joseph D [Rochester, MN; Smith, Brian Edward [Rochester, MN

    2011-04-19

    An apparatus and program product determine a nodal fault along the boundary, or face, of a computing cell. Nodes on adjacent cell boundaries communicate with each other, and the communications are analyzed to determine if a node or connection is faulty.

  12. The boundary vector cell model of place cell firing and spatial memory

    PubMed Central

    Barry, Caswell; Lever, Colin; Hayman, Robin; Hartley, Tom; Burton, Stephen; O'Keefe, John; Jeffery, Kate; Burgess, Neil

    2009-01-01

    We review evidence for the boundary vector cell model of the environmental determinants of the firing of hippocampal place cells. Preliminary experimental results are presented concerning the effects of addition or removal of environmental boundaries on place cell firing and evidence that boundary vector cells may exist in the subiculum. We review and update computational simulations predicting the location of human search within a virtual environment of variable geometry, assuming that boundary vector cells provide one of the input representations of location used in mammalian spatial memory. Finally, we extend the model to include experience-dependent modification of connection strengths through a BCM-like learning rule, and compare the effects to experimental data on the firing of place cells under geometrical manipulations to their environment. The relationship between neurophysiological results in rats and spatial behaviour in humans is discussed. PMID:16703944

  13. Meso-Scale Finite Element Analysis of Mechanical Behavior of 3D Braided Composites Subjected to Biaxial Tension Loadings

    NASA Astrophysics Data System (ADS)

    Zhang, Chao; Curiel-Sosa, Jose L.; Bui, Tinh Quoc

    2018-04-01

    In many engineering applications, 3D braided composites are designed for primary loading-bearing structures, and they are frequently subjected to multi-axial loading conditions during service. In this paper, a unit-cell based finite element model is developed for assessment of mechanical behavior of 3D braided composites under different biaxial tension loadings. To predict the damage initiation and evolution of braiding yarns and matrix in the unit-cell, we thus propose an anisotropic damage model based on Murakami damage theory in conjunction with Hashin failure criteria and maximum stress criteria. To attain exact stress ratio, force loading mode of periodic boundary conditions which never been attempted before is first executed to the unit-cell model to apply the biaxial tension loadings. The biaxial mechanical behaviors, such as the stress distribution, tensile modulus and tensile strength are analyzed and discussed. The damage development of 3D braided composites under typical biaxial tension loadings is simulated and the damage mechanisms are revealed in the simulation process. The present study generally provides a new reference to the meso-scale finite element analysis (FEA) of multi-axial mechanical behavior of other textile composites.

  14. 75 FR 21659 - Notice of Availability of a Draft Environmental Assessment and Finding of No Significant Impact...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-26

    ... INTERNATIONAL BOUNDARY AND WATER COMMIISSION UNITED STATES AND MEXICO; UNITED STATES SECTION... States Section, International Boundary and Water Commission, United States and Mexico (USIBWC). ACTION... Water Commission; 4171 N. Mesa, C-100; El Paso, Texas 79902. Telephone: (915) 832-4707; e-mail: lisa...

  15. HELP - A Multimaterial Eulerian Program in Two Space Dimensions and Time

    DTIC Science & Technology

    1976-04-01

    ASSUMPTIONS 3-1 3.2 STRENGTH PHASE (SPHASE) 3-1 3.2.1 Definition of Strain Rate Derivatives for Cells at a Grid Boundary 3-3 3.2.2 Definition...of Interpolated Strain Rates and Stresses for Cells at a Grid Boundary 3-4 3.2.3 Definition of Velocities and Deviator Stresses at Grid Boundaries...Grid Boundaries 3-9 3.4.2 Change of Momentum for Cells at Reflective Grid Boundaries in TPHASE.. 3-10 3.4.3 Correction to Theoretical Energy for

  16. 49 CFR 71.5 - Boundary line between eastern and central zones.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... junction of the western boundary of the State of Michigan with the boundary between the United States and... boundary of the State of Michigan; thence southerly and easterly along the western boundary of the State of... along the western boundary of the State of Michigan to its junction with the southern boundary thereof...

  17. 49 CFR 71.5 - Boundary line between eastern and central zones.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... junction of the western boundary of the State of Michigan with the boundary between the United States and... boundary of the State of Michigan; thence southerly and easterly along the western boundary of the State of... along the western boundary of the State of Michigan to its junction with the southern boundary thereof...

  18. The Western North American Cretaceous-Tertiary (K-T) boundary interval and its content of shock-metamorphosed minerals: Implications concerning the K-T boundary impact-extinction theory

    NASA Technical Reports Server (NTRS)

    Izett, G. A.

    1988-01-01

    At 20 sites in the Raton Basin of Colorado and New Mexico, and at several other sites in Wyoming, Montana, and Canada, a pair of claystone units, an Ir abundance anomaly, and a concentration of shock-metamorphosed minerals mark the palynological K-T boundary. The K-T boundary claystone, which is composed of kaolinite and small amounts of illite/smectite mixed-layer clay, is similar in most respects to kaolinite tonstein layers in coal beds. At some, but not all, K-T boundary localities, the boundary claystone contains solid kaolinite and hollow and solid goyazite spherules, 0.05 to 1.2 mm in diameter. The upper unit, the K-T boundary impact layer, consists chiefly of kaolinite and various amounts of illite/smectite mixed-layer clay. The impact layer and boundary claystone are similar chemically, except that the former has slightly more Fe, K, Ba, Cr, Cu, Li, V, and Zn than the latter. The facts that the boundary claystone and impact layer contain anomalous amounts of Ir, comprise a stratigraphic couplet at Western North American sites, and form thin, discrete layers, similar to air-fall units (volcanic or impact), suggest that the claystone units are of impact origin. Significantly, the impact layer contains as much as 2 percent clastic mineral grains, about 30 percent of which contain multiple sets of shock lamellae. Only one such concentration of shocked minerals has been found near the K-T boundary. The type of K-T boundary shock-metamorphosed materials (quartzite and metaquartzite) in the impact layer and the lack of shock lamellae in quartz and feldspar of pumice lapilli and granitic xenoliths in air-fall pumice units of silicic tuffs, such as the Bishop Tuff, eliminate the possibility that the shock-metamorphosed minerals in the K-T impact layer are of volcanic origin. The global size distribution and abundance of shock-metamorphosed mineral grains suggest that the K-T impact occurred in North America.

  19. Generating Inviscid and Viscous Fluid Flow Simulations over a Surface Using a Quasi-simultaneous Technique

    NASA Technical Reports Server (NTRS)

    Sturdza, Peter (Inventor); Martins-Rivas, Herve (Inventor); Suzuki, Yoshifumi (Inventor)

    2014-01-01

    A fluid-flow simulation over a computer-generated surface is generated using a quasi-simultaneous technique. The simulation includes a fluid-flow mesh of inviscid and boundary-layer fluid cells. An initial fluid property for an inviscid fluid cell is determined using an inviscid fluid simulation that does not simulate fluid viscous effects. An initial boundary-layer fluid property a boundary-layer fluid cell is determined using the initial fluid property and a viscous fluid simulation that simulates fluid viscous effects. An updated boundary-layer fluid property is determined for the boundary-layer fluid cell using the initial fluid property, initial boundary-layer fluid property, and an interaction law. The interaction law approximates the inviscid fluid simulation using a matrix of aerodynamic influence coefficients computed using a two-dimensional surface panel technique and a fluid-property vector. An updated fluid property is determined for the inviscid fluid cell using the updated boundary-layer fluid property.

  20. Cell segregation in the vertebrate hindbrain relies on actomyosin cables located at the interhombomeric boundaries

    PubMed Central

    Calzolari, Simone; Terriente, Javier; Pujades, Cristina

    2014-01-01

    Segregating cells into compartments during embryonic development is essential for growth and pattern formation. Physical mechanisms shaping compartment boundaries were recently explored in Drosophila, where actomyosin-based barriers were revealed to be important for keeping cells apart. In vertebrates, interhombomeric boundaries are straight interfaces, which often serve as signaling centers that pattern the surrounding tissue. Here, we demonstrate that in the hindbrain of zebrafish embryos cell sorting sharpens the molecular boundaries and, once borders are straight, actomyosin barriers are key to keeping rhombomeric cells segregated. Actomyosin cytoskeletal components are enriched at interhombomeric boundaries, forming cable-like structures in the apical side of the neuroepithelial cells by the time morphological boundaries are visible. When myosin II function is inhibited, cable structures do not form, leading to rhombomeric cell mixing. Downregulation of EphA4a compromises actomyosin cables and cells with different rhombomeric identity intermingle, and the phenotype is rescued enhancing myosin II activity. Moreover, enrichment of actomyosin structures is obtained when EphA4 is ectopically expressed in even-numbered rhombomeres. These findings suggest that mechanical barriers act downstream of EphA/ephrin signaling to segregate cells from different rhombomeres. PMID:24569501

  1. 49 CFR 71.5 - Boundary line between eastern and central zones.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 49 Transportation 1 2010-10-01 2010-10-01 false Boundary line between eastern and central zones... BOUNDARIES § 71.5 Boundary line between eastern and central zones. (a) Minnesota-Michigan-Wisconsin. From the junction of the western boundary of the State of Michigan with the boundary between the United States and...

  2. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Parlinski, K.; Hashi, Y.; Tsunekawa, S.

    A model of lanthanum orthoniobate which possesses a ferroelastic tetragonal-monoclinic phase transition is proposed. It contains only one particle per unit cell, but it is constructed consistently with symmetry changes at the phase transition. The model parameters are chosen to reproduce the bare soft mode, degree of deformation of the tetragonal unit cell to monoclinic one, and the phase transition temperature. The ferroelastic system with free boundary conditions was simulated by the molecular dynamics technique, and the second order phase transition was reproduced. The studied annealing process shows formation of the stripe lenticular domain pattern, which has been interrupted bymore » appearance of a temporary band of perpendicularly oriented lenticular domains. The maps contain W{sup {prime}}-type domain walls whose orientations are fixed only by interplay of potential parameters and not by symmetry elements. The simulated domain pattern has the same features as those observed by transmission electron microscopy. {copyright} {ital 1997 Materials Research Society.}« less

  3. Physically elastic analysis of a cylindrical ring as a unit cell of a complete composite under applied stress in the complex plane using cubic polynomials

    NASA Astrophysics Data System (ADS)

    Monfared, Vahid

    2018-03-01

    Elastic analysis is analytically presented to predict the behaviors of the stress and displacement components in the cylindrical ring as a unit cell of a complete composite under applied stress in the complex plane using cubic polynomials. This analysis is based on the complex computation of the stress functions in the complex plane and polar coordinates. Also, suitable boundary conditions are considered and assumed to analyze along with the equilibrium equations and bi-harmonic equation. This method has some important applications in many fields of engineering such as mechanical, civil and material engineering generally. One of the applications of this research work is in composite design and designing the cylindrical devices under various loadings. Finally, it is founded that the convergence and accuracy of the results are suitable and acceptable through comparing the results.

  4. Investigation of Micro-Scale Architectural Effects on Damage of Composites

    NASA Technical Reports Server (NTRS)

    Stier, Bertram; Bednarcyk, Brett A.; Simon, Jaan W.; Reese, Stefanie

    2015-01-01

    This paper presents a three-dimensional, energy based, anisotropic, stiffness reduction, progressive damage model for composite materials and composite material constituents. The model has been implemented as a user-defined constitutive model within the Abaqus finite element software package and applied to simulate the nonlinear behavior of a damaging epoxy matrix within a unidirectional composite material. Three different composite microstructures were considered as finite element repeating unit cells, with appropriate periodicity conditions applied at the boundaries. Results representing predicted transverse tensile, longitudinal shear, and transverse shear stress-strain curves are presented, along with plots of the local fields indicating the damage progression within the microstructure. It is demonstrated that the damage model functions appropriately at the matrix scale, enabling localization of the damage to simulate failure of the composite material. The influence of the repeating unit cell geometry and the effect of the directionality of the applied loading are investigated and discussed.

  5. Segmentation of the Clustered Cells with Optimized Boundary Detection in Negative Phase Contrast Images

    PubMed Central

    Wang, Yuliang; Zhang, Zaicheng; Wang, Huimin; Bi, Shusheng

    2015-01-01

    Cell image segmentation plays a central role in numerous biology studies and clinical applications. As a result, the development of cell image segmentation algorithms with high robustness and accuracy is attracting more and more attention. In this study, an automated cell image segmentation algorithm is developed to get improved cell image segmentation with respect to cell boundary detection and segmentation of the clustered cells for all cells in the field of view in negative phase contrast images. A new method which combines the thresholding method and edge based active contour method was proposed to optimize cell boundary detection. In order to segment clustered cells, the geographic peaks of cell light intensity were utilized to detect numbers and locations of the clustered cells. In this paper, the working principles of the algorithms are described. The influence of parameters in cell boundary detection and the selection of the threshold value on the final segmentation results are investigated. At last, the proposed algorithm is applied to the negative phase contrast images from different experiments. The performance of the proposed method is evaluated. Results show that the proposed method can achieve optimized cell boundary detection and highly accurate segmentation for clustered cells. PMID:26066315

  6. An Improved Model of Nonuniform Coleochaete Cell Division.

    PubMed

    Wang, Yuandi; Cong, Jinyu

    2016-08-01

    Cell division is a key biological process in which cells divide forming new daughter cells. In the present study, we investigate continuously how a Coleochaete cell divides by introducing a modified differential equation model in parametric equation form. We discuss both the influence of "dead" cells and the effects of various end-points on the formation of the new cells' boundaries. We find that the boundary condition on the free end-point is different from that on the fixed end-point; the former has a direction perpendicular to the surface. It is also shown that the outer boundaries of new cells are arc-shaped. The numerical experiments and theoretical analyses for this model to construct the outer boundary are given.

  7. Structure-function relationships between aldolase C/zebrin II expression and complex spike synchrony in the cerebellum.

    PubMed

    Tsutsumi, Shinichiro; Yamazaki, Maya; Miyazaki, Taisuke; Watanabe, Masahiko; Sakimura, Kenji; Kano, Masanobu; Kitamura, Kazuo

    2015-01-14

    Simple and regular anatomical structure is a hallmark of the cerebellar cortex. Parasagittally arrayed alternate expression of aldolase C/zebrin II in Purkinje cells (PCs) has been extensively studied, but surprisingly little is known about its functional significance. Here we found a precise structure-function relationship between aldolase C expression and synchrony of PC complex spike activities that reflect climbing fiber inputs to PCs. We performed two-photon calcium imaging in transgenic mice in which aldolase C compartments can be visualized in vivo, and identified highly synchronous complex spike activities among aldolase C-positive or aldolase C-negative PCs, but not across these populations. The boundary of aldolase C compartments corresponded to that of complex spike synchrony at single-cell resolution. Sensory stimulation evoked aldolase C compartment-specific complex spike responses and synchrony. This result further revealed the structure-function segregation. In awake animals, complex spike synchrony both within and between PC populations across the aldolase C boundary were enhanced in response to sensory stimuli, in a way that two functionally distinct PC ensembles are coactivated. These results suggest that PC populations characterized by aldolase C expression precisely represent distinct functional units of the cerebellar cortex, and these functional units can cooperate to process sensory information in awake animals. Copyright © 2015 the authors 0270-6474/15/350843-10$15.00/0.

  8. Method of making quasi-grain boundary-free polycrystalline solar cell structure and solar cell structure obtained thereby

    DOEpatents

    Gonzalez, Franklin N.; Neugroschel, Arnost

    1984-02-14

    A new solar cell structure is provided which will increase the efficiency of polycrystalline solar cells by suppressing or completely eliminating the recombination losses due to the presence of grain boundaries. This is achieved by avoiding the formation of the p-n junction (or other types of junctions) in the grain boundaries and by eliminating the grain boundaries from the active area of the cell. This basic concept can be applied to any polycrystalline material; however, it will be most beneficial for cost-effective materials having small grains, including thin film materials.

  9. Uncertainty in gridded CO 2 emissions estimates

    DOE PAGES

    Hogue, Susannah; Marland, Eric; Andres, Robert J.; ...

    2016-05-19

    We are interested in the spatial distribution of fossil-fuel-related emissions of CO 2 for both geochemical and geopolitical reasons, but it is important to understand the uncertainty that exists in spatially explicit emissions estimates. Working from one of the widely used gridded data sets of CO 2 emissions, we examine the elements of uncertainty, focusing on gridded data for the United States at the scale of 1° latitude by 1° longitude. Uncertainty is introduced in the magnitude of total United States emissions, the magnitude and location of large point sources, the magnitude and distribution of non-point sources, and from themore » use of proxy data to characterize emissions. For the United States, we develop estimates of the contribution of each component of uncertainty. At 1° resolution, in most grid cells, the largest contribution to uncertainty comes from how well the distribution of the proxy (in this case population density) represents the distribution of emissions. In other grid cells, the magnitude and location of large point sources make the major contribution to uncertainty. Uncertainty in population density can be important where a large gradient in population density occurs near a grid cell boundary. Uncertainty is strongly scale-dependent with uncertainty increasing as grid size decreases. In conclusion, uncertainty for our data set with 1° grid cells for the United States is typically on the order of ±150%, but this is perhaps not excessive in a data set where emissions per grid cell vary over 8 orders of magnitude.« less

  10. Studies of the phase gradient at the boundary of the phase diffusion equation, motivated by peculiar wave patterns of rhythmic contraction in the amoeboid movement of Physarum polycephalum

    NASA Astrophysics Data System (ADS)

    Iima, Makoto; Kori, Hiroshi; Nakagaki, Toshiyuki

    2017-04-01

    The boundary of a cell is the interface with its surroundings and plays a key role in controlling the cell movement adaptations to different environments. We propose a study of the boundary effects on the patterns and waves of the rhythmic contractions in plasmodia of Physarum polycephalum, a tractable model organism of the amoeboid type. Boundary effects are defined as the effects of both the boundary conditions and the boundary shape. The rhythmicity of contraction can be modulated by local stimulation of temperature, light and chemicals, and by local deformation of cell shape via mechanosensitive ion channels as well. First, we examined the effects of boundary cell shapes in the case of a special shape resembling a tadpole, while requiring that the natural frequency in the proximity of the boundary is slightly higher and uniform. The simulation model reproduced the approximate propagated wave, from the tail to the head, while the inward waves were observed only near the periphery of the head section of the tadpole-shape. A key finding was that the frequency of the rhythmic contractions depended on the local shape of cell boundary. This implies that the boundary conditions of the phase were not always homogeneous. To understand the dependency, we reduced the two-dimensional model into a one-dimensional continuum model with Neumann boundary conditions. Here, the boundary conditions reflect the frequency distribution at the boundary. We described the analytic solutions and calculated the relationship between the boundary conditions and the wave propagation for a one-dimensional model of the continuous oscillatory field and a discrete coupled oscillator system. The results obtained may not be limited to cell movement of Physarum, but may be applicable to the other physical systems since the analysis used a generic phase diffusion equation.

  11. Regulating mechanical tension at compartment boundaries in Drosophila.

    PubMed

    Michel, Marcus; Dahmann, Christian

    2016-10-01

    During animal development, cells with similar function and fate often stay together and sort out from cells with different fates. In Drosophila wing imaginal discs, cells of anterior and posterior fates are separated by a straight compartment boundary. Separation of anterior and posterior cells requires the homeodomain-containing protein Engrailed, which is expressed in posterior cells. Engrailed induces the expression of the short-range signaling molecule Hedgehog in posterior cells and confines Hedgehog signal transduction to anterior cells. Transduction of the Hedgehog signal in anterior cells is required for the separation of anterior and posterior cells. Previous work showed that this separation of cells involves a local increase in mechanical tension at cell junctions along the compartment boundary. However, how mechanical tension was locally increased along the compartment boundary remained unknown. A recent paper now shows that the difference in Hedgehog signal transduction between anterior and posterior cells is necessary and sufficient to increase mechanical tension. The local increase in mechanical tension biases junctional rearrangements during cell intercalations to maintain the straight shape of the compartment boundary. These data highlight how developmental signals can generate patterns of mechanical tension important for tissue organization.

  12. Classification of rocky headlands in California with relevance to littoral cell boundary delineation

    USGS Publications Warehouse

    George, Douglas A.; Largier, John L.; Storlazzi, Curt D.; Barnard, Patrick L.

    2015-01-01

    Despite extensive studies of hydrodynamics and sediment flux along beaches, there is little information on the processes, pathways and timing of water and sediment transport around rocky headlands. In this study, headlands along the California coast are classified to advance understanding of headland dynamics and littoral cell boundaries in support of improved coastal management decisions. Geomorphological parameters for 78 headlands were quantified from geological maps, remote-sensing imagery, navigational charts, and shoreline geospatial databases. K-means cluster analysis grouped the headlands into eight distinct classes based on headland perimeter, bathymetric slope ratio, and the headland apex angle. Wave data were used to investigate the potential for sediment transport around the headland types and determine the efficacy of the headland as a littoral cell boundary. Four classes of headland appear to function well as littoral cell boundaries, with headland size (e.g., perimeter or area) and a marked change in nearshore bathymetry across the headland being relevant attributes. About half of the traditional California littoral cell boundaries align with headland classes that are expected to perform poorly in blocking alongshore sediment transport, calling into question these boundaries. Better definition of these littoral cell boundaries is important for regional sediment management decisions.

  13. Transformation of topologically close-packed β-W to body-centered cubic α-W: Comparison of experiments and computations.

    PubMed

    Barmak, Katayun; Liu, Jiaxing; Harlan, Liam; Xiao, Penghao; Duncan, Juliana; Henkelman, Graeme

    2017-10-21

    The enthalpy and activation energy for the transformation of the metastable form of tungsten, β-W, which has the topologically close-packed A15 structure (space group Pm3¯n), to equilibrium α-W, which is body-centered cubic (A2, space group Im3¯m), was measured using differential scanning calorimetry. The β-W films were 1 μm-thick and were prepared by sputter deposition in argon with a small amount of nitrogen. The transformation enthalpy was measured as -8.3 ± 0.4 kJ/mol (-86 ± 4 meV/atom) and the transformation activation energy as 2.2 ± 0.1 eV. The measured enthalpy was found to agree well with the difference in energies of α and β tungsten computed using density functional theory, which gave a value of -82 meV/atom for the transformation enthalpy. A calculated concerted transformation mechanism with a barrier of 0.4 eV/atom, in which all the atoms in an A15 unit cell transform into A2, was found to be inconsistent with the experimentally measured activation energy for any critical nucleus larger than two A2 unit cells. Larger calculations of eight A15 unit cells spontaneously relax to a mechanism in which part of the supercell first transforms from A15 to A2, creating a phase boundary, before the remaining A15 transforms into the A2 phase. Both calculations indicate that a nucleation and growth mechanism is favored over a concerted transformation. More consistent with the experimental activation energy was that of a calculated local transformation mechanism at the A15-A2 phase boundary, computed as 1.7 eV using molecular dynamics simulations. This calculated phase transformation mechanism involves collective rearrangements of W atoms in the disordered interface separating the A15 and A2 phases.

  14. Physical therapists' perceptions of sexual boundaries in clinical practice in the United States.

    PubMed

    Roush, Susan E; Cox, Kenneth; Garlick, John; Kane, Molly; Marchand, Lauren

    2015-07-01

    Physical therapists' perceptions of sexual boundaries in clinic settings in the United States have not been studied. Given the magnitude of potential consequences of sexual boundary violations, examination of this topic is imperative. The purpose of this study was to describe the perceptions of sexual boundaries among licensed physical therapists in the United States. Licensed physical therapists from Arkansas, Kansas, Maine, Ohio, and Oregon were contacted by email and asked to complete a sexual boundaries questionnaire via Survey Monkey™; 967 surveys (7.3%) were returned. While most physical therapists practice within the profession's Code of Ethics, there are practitioners who date current and former patients, and condone patients' sexual banter in the clinic. Almost half (42%) of the participants acknowledged feeling sexually attracted to a patient. While gender differences were seen throughout the analyses, generally, the demographic and professional variables did not account for meaningful variance. Results were similar to previous research on physiotherapists in other countries. Sexuality is part of the physical therapy practice environment and physical therapists' understanding of sexual boundaries is ambiguous. These data can inform professional conversation on sexual boundaries in physical therapy practice leading to greater understanding and decreased potential for violations.

  15. Digital Microfluidics for Manipulation and Analysis of a Single Cell.

    PubMed

    He, Jie-Long; Chen, An-Te; Lee, Jyong-Huei; Fan, Shih-Kang

    2015-09-15

    The basic structural and functional unit of a living organism is a single cell. To understand the variability and to improve the biomedical requirement of a single cell, its analysis has become a key technique in biological and biomedical research. With a physical boundary of microchannels and microstructures, single cells are efficiently captured and analyzed, whereas electric forces sort and position single cells. Various microfluidic techniques have been exploited to manipulate single cells through hydrodynamic and electric forces. Digital microfluidics (DMF), the manipulation of individual droplets holding minute reagents and cells of interest by electric forces, has received more attention recently. Because of ease of fabrication, compactness and prospective automation, DMF has become a powerful approach for biological application. We review recent developments of various microfluidic chips for analysis of a single cell and for efficient genetic screening. In addition, perspectives to develop analysis of single cells based on DMF and emerging functionality with high throughput are discussed.

  16. Digital Microfluidics for Manipulation and Analysis of a Single Cell

    PubMed Central

    He, Jie-Long; Chen, An-Te; Lee, Jyong-Huei; Fan, Shih-Kang

    2015-01-01

    The basic structural and functional unit of a living organism is a single cell. To understand the variability and to improve the biomedical requirement of a single cell, its analysis has become a key technique in biological and biomedical research. With a physical boundary of microchannels and microstructures, single cells are efficiently captured and analyzed, whereas electric forces sort and position single cells. Various microfluidic techniques have been exploited to manipulate single cells through hydrodynamic and electric forces. Digital microfluidics (DMF), the manipulation of individual droplets holding minute reagents and cells of interest by electric forces, has received more attention recently. Because of ease of fabrication, compactness and prospective automation, DMF has become a powerful approach for biological application. We review recent developments of various microfluidic chips for analysis of a single cell and for efficient genetic screening. In addition, perspectives to develop analysis of single cells based on DMF and emerging functionality with high throughput are discussed. PMID:26389890

  17. Documentation of a computer program to simulate transient leakage from confining units using the modular finite-difference, ground-water flow model

    USGS Publications Warehouse

    Leake, S.A.; Leahy, P.P.; Navoy, A.S.

    1994-01-01

    Transient leakage into or out of a compressible fine-grained confining unit results from ground- water storage changes within the unit. The computer program described in this report provides a new method of simulating transient leakage using the U.S. Geological Survey modular finite- difference ground-water flow model (MODFLOW). The new program is referred to as the Transient- Leakage Package. The Transient-Leakage Package solves integrodifferential equations that describe flow across the upper and lower boundaries of confining units. For each confining unit, vertical hydraulic conductivity, thickness, and specific storage are specified in input arrays. These properties can vary from cell to cell and the confining unit need not be present at all locations in the grid; however, the confining units must be bounded above and below by model layers in which head is calculated or specified. The package was used in an example problem to simulate drawdown around a pumping well in a system with two aquifers separated by a confining unit. For drawdown values in excess of 1 centimeter, the solution using the new package closely matched an exact analytical solution. The problem also was simulated without the new package by using a separate model layer to represent the confining unit. That simulation was refined by using two model layers to represent the confining unit. The simulation using the Transient-Leakage Package was faster and more accurate than either of the simulations using model layers to represent the confining unit.

  18. Unipolar distributions of junctional Myosin II identify cell stripe boundaries that drive cell intercalation throughout Drosophila axis extension

    PubMed Central

    Tetley, Robert J; Blanchard, Guy B; Fletcher, Alexander G; Adams, Richard J; Sanson, Bénédicte

    2016-01-01

    Convergence and extension movements elongate tissues during development. Drosophila germ-band extension (GBE) is one example, which requires active cell rearrangements driven by Myosin II planar polarisation. Here, we develop novel computational methods to analyse the spatiotemporal dynamics of Myosin II during GBE, at the scale of the tissue. We show that initial Myosin II bipolar cell polarization gives way to unipolar enrichment at parasegmental boundaries and two further boundaries within each parasegment, concomitant with a doubling of cell number as the tissue elongates. These boundaries are the primary sites of cell intercalation, behaving as mechanical barriers and providing a mechanism for how cells remain ordered during GBE. Enrichment at parasegment boundaries during GBE is independent of Wingless signaling, suggesting pair-rule gene control. Our results are consistent with recent work showing that a combinatorial code of Toll-like receptors downstream of pair-rule genes contributes to Myosin II polarization via local cell-cell interactions. We propose an updated cell-cell interaction model for Myosin II polarization that we tested in a vertex-based simulation. DOI: http://dx.doi.org/10.7554/eLife.12094.001 PMID:27183005

  19. Shock-Induced Shear Bands in an Energetic Molecular Crystal: Application of Shock-Front Absorbing Boundary Conditions to Molecular Dynamics Simulations

    DTIC Science & Technology

    2008-07-17

    orthorhombic unit cell in space group Pbca that contains eight molecules - polymorph .12 An RDX molecule is depicted in Fig. 1a and a projection of the...tions of crystalline cyclotetramethylene tetranitramine HMX Refs. 26 and 27 and RDX . In the case of RDX the Smith-Bharadwaj potential25 not only...However, NEMD studies of shock waves in - HMX by Jaramillo et al.27 revealed a gradual transition from dislocation-mediated plasticity to deformation

  20. Testing strong-segregation theory against self-consistent-field theory for block copolymer melts

    NASA Astrophysics Data System (ADS)

    Matsen, M. W.

    2001-06-01

    We introduce a highly efficient self-consistent-field theory (SCFT) method for examining the cylindrical and spherical block copolymer morphologies using a standard unit cell approximation (UCA). The method is used to calculate the classical diblock copolymer phase boundaries deep into the strong-segregation regime, where they can be compared with recent improvements to strong-segregation theory (SST). The comparison suggests a significant discrepancy between the two theories indicating that our understanding of strongly stretched polymer brushes is still incomplete.

  1. Finite Element Analysis of Functionally Graded Material to Reduce Crazing in Transparent Armor

    DTIC Science & Technology

    2015-09-01

    Constraints 3 Results 4 Tensile Pressure (psi) 4 Conclusions and Path Forward 5 References 7 Distribution List 9 FIGURES 1 Pressure plot 1 2 3D...Digimat unit cell and 2D plane strain model for ABAQUS 2 3 Control and FGM models 3 4 Boundary conditions 4 5 Pressure results (time = 23.47 µs) 4...6 Pressure results 1 5 7 Pressure results 2 5 UNCLASSIFIED Approved for public release; distribution is unlimited. 1 INTRODUCTION

  2. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hen, Itay; Karliner, Marek

    We study the zero-temperature crystalline structure of baby Skyrmions by applying a full-field numerical minimization algorithm to baby Skyrmions placed inside different parallelogramic unit cells and imposing periodic boundary conditions. We find that within this setup, the minimal energy is obtained for the hexagonal lattice, and that in the resulting configuration the Skyrmion splits into quarter Skyrmions. In particular, we find that the energy in the hexagonal case is lower than the one obtained on the well-studied rectangular lattice, in which splitting into half Skyrmions is observed.

  3. PA-GFP: a window into the subcellular adventures of the individual mitochondrion.

    PubMed

    Haigh, Sarah E; Twig, Gilad; Molina, Anthony A J; Wikstrom, Jakob D; Deutsch, Motti; Shirihai, Orian S

    2007-01-01

    Mitochondrial connectivity is characterized by matrix lumen continuity and by dynamic rewiring through fusion and fission events. While these mechanisms homogenize the mitochondrial population, a number of studies looking at mitochondrial membrane potential have demonstrated that mitochondria exist as a heterogeneous population within individual cells. To address the relationship between mitochondrial dynamics and heterogeneity, we tagged and tracked individual mitochondria over time while monitoring their mitochondrial membrane potential (deltapsi(m)). By utilizing photoactivatible-GFP (PA-GFP), targeted to the mitochondrial matrix, we determined the boundaries of the individual mitochondrion. A single mitochondrion is defined by the continuity of its matrix lumen. The boundaries set by luminal continuity matched those set by electrical coupling, indicating that the individual mitochondrion is equipotential throughout the entire organelle. Similar results were obtained with PA-GFP targeted to the inner membrane indicating that matrix continuity parallels inner membrane continuity. Sequential photoconversion of matrix PA-GFP in multiple locations within the mitochondrial web reveals that each ramified mitochondrial structure is composed of juxtaposed but discontinuous units. Moreover, as many as half of the events in which mitochondria come into contact, do not result in fusion. While all fission events generated two electrically uncoupled discontinuous matrices, the two daughter mitochondria frequently remained juxtaposed, keeping the tubular appearance unchanged. These morphologically invisible fission events illustrate the difference between mitochondrial fission and fragmentation; the latter representing the movement and separation of disconnected units. Simultaneous monitoring of deltapsi(m) of up to four individual mitochondria within the same cell revealed that subcellular heterogeneity in deltapsi(m) does not represent multiple unstable mitochondria that appear 'heterogeneous' at any given point, but rather multiple stable, but heterogeneous units.

  4. System for conversion between the boundary representation model and a constructive solid geometry model of an object

    DOEpatents

    Christensen, Noel C.; Emery, James D.; Smith, Maurice L.

    1988-04-05

    A system converts from the boundary representation of an object to the constructive solid geometry representation thereof. The system converts the boundary representation of the object into elemental atomic geometrical units or I-bodies which are in the shape of stock primitives or regularized intersections of stock primitives. These elemental atomic geometrical units are then represented in symbolic form. The symbolic representations of the elemental atomic geometrical units are then assembled heuristically to form a constructive solid geometry representation of the object usable for manufacturing thereof. Artificial intelligence is used to determine the best constructive solid geometry representation from the boundary representation of the object. Heuristic criteria are adapted to the manufacturing environment for which the device is to be utilized. The surface finish, tolerance, and other information associated with each surface of the boundary representation of the object are mapped onto the constructive solid geometry representation of the object to produce an enhanced solid geometry representation, particularly useful for computer-aided manufacture of the object.

  5. Fine-tuning of Notch signaling sets the boundary of the organ of Corti and establishes sensory cell fates

    PubMed Central

    Basch, Martin L; Brown, Rogers M; Jen, Hsin-I; Semerci, Fatih; Depreux, Frederic; Edlund, Renée K; Zhang, Hongyuan; Norton, Christine R; Gridley, Thomas; Cole, Susan E; Doetzlhofer, Angelika; Maletic-Savatic, Mirjana; Segil, Neil; Groves, Andrew K

    2016-01-01

    The signals that induce the organ of Corti and define its boundaries in the cochlea are poorly understood. We show that two Notch modifiers, Lfng and Mfng, are transiently expressed precisely at the neural boundary of the organ of Corti. Cre-Lox fate mapping shows this region gives rise to inner hair cells and their associated inner phalangeal cells. Mutation of Lfng and Mfng disrupts this boundary, producing unexpected duplications of inner hair cells and inner phalangeal cells. This phenotype is mimicked by other mouse mutants or pharmacological treatments that lower but not abolish Notch signaling. However, strong disruption of Notch signaling causes a very different result, generating many ectopic hair cells at the expense of inner phalangeal cells. Our results show that Notch signaling is finely calibrated in the cochlea to produce precisely tuned levels of signaling that first set the boundary of the organ of Corti and later regulate hair cell development. DOI: http://dx.doi.org/10.7554/eLife.19921.001 PMID:27966429

  6. Notch and affinity boundaries in Drosophila.

    PubMed

    Herranz, Héctor; Milán, Marco

    2006-02-01

    Cells in multicellular organisms often do not intermingle freely with each other. Differential cell affinities can contribute to organizing cells into different tissues. Drosophila limbs and the vertebrate central nervous system are subdivided into compartments. Cells in adjacent compartments do not mix. Cell interactions mediated by Notch-family receptors have been implicated in the specification of these compartment boundaries. Two recent reports analyze the role of the Notch signaling pathway in the generation of an affinity boundary in the Drosophila wing. The first report analyzes the connection between Notch and the actin cytoskeleton. The second report analyzes the differential requirements of Notch and the transcription factor Suppressor of Hairless in generating the affinity boundary.

  7. Geologic framework for the national assessment of carbon dioxide storage resources: Greater Green River Basin, Wyoming, Colorado, and Utah, and Wyoming-Idaho-Utah Thrust Belt: Chapter E in Geologic framework for the national assessment of carbon dioxide storage resources

    USGS Publications Warehouse

    Buursink, Marc L.; Slucher, Ernie R.; Brennan, Sean T.; Doolan, Colin A.; Drake II, Ronald M.; Merrill, Matthew D.; Warwick, Peter D.; Blondes, Madalyn S.; Freeman, P.A.; Cahan, Steven M.; DeVera, Christina A.; Lohr, Celeste D.

    2014-01-01

    The 2007 Energy Independence and Security Act (Public Law 110–140) directs the U.S. Geological Survey (USGS) to conduct a national assessment of potential geologic storage resources for carbon dioxide (CO2). The methodology used by the USGS for the national CO2 assessment follows up on previous USGS work. The methodology is non-economic and intended to be used at regional to subbasinal scales. This report identifies and contains geologic descriptions of 14 storage assessment units (SAUs) in Ordovician to Upper Cretaceous sedimentary rocks within the Greater Green River Basin (GGRB) of Wyoming, Colorado, and Utah, and eight SAUs in Ordovician to Upper Cretaceous sedimentary rocks within the Wyoming-Idaho-Utah Thrust Belt (WIUTB). The GGRB and WIUTB are contiguous with nearly identical geologic units; however, the GGRB is larger in size, whereas the WIUTB is more structurally complex. This report focuses on the characteristics, specified in the methodology, that influence the potential CO2 storage resource in the SAUs. Specific descriptions of the SAU boundaries, as well as their sealing and reservoir units, are included. Properties for each SAU, such as depth to top, gross thickness, porosity, permeability, groundwater quality, and structural reservoir traps, are typically provided to illustrate geologic factors critical to the assessment. This geologic information was employed, as specified in the USGS methodology, to calculate a probabilistic distribution of potential storage resources in each SAU. Figures in this report show SAU boundaries and cell maps of well penetrations through sealing units into the top of the storage formations. The cell maps show the number of penetrating wells within one square mile and are derived from interpretations of variably attributed well data and a digital compilation that is known not to include all drilling.

  8. Neural Networks for Segregation of Multiple Objects: Visual Figure-Ground Separation and Auditory Pitch Perception.

    NASA Astrophysics Data System (ADS)

    Wyse, Lonce

    An important component of perceptual object recognition is the segmentation into coherent perceptual units of the "blooming buzzing confusion" that bombards the senses. The work presented herein develops neural network models of some key processes of pre-attentive vision and audition that serve this goal. A neural network model, called an FBF (Feature -Boundary-Feature) network, is proposed for automatic parallel separation of multiple figures from each other and their backgrounds in noisy images. Figure-ground separation is accomplished by iterating operations of a Boundary Contour System (BCS) that generates a boundary segmentation of a scene, and a Feature Contour System (FCS) that compensates for variable illumination and fills-in surface properties using boundary signals. A key new feature is the use of the FBF filling-in process for the figure-ground separation of connected regions, which are subsequently more easily recognized. The new CORT-X 2 model is a feed-forward version of the BCS that is designed to detect, regularize, and complete boundaries in up to 50 percent noise. It also exploits the complementary properties of on-cells and off -cells to generate boundary segmentations and to compensate for boundary gaps during filling-in. In the realm of audition, many sounds are dominated by energy at integer multiples, or "harmonics", of a fundamental frequency. For such sounds (e.g., vowels in speech), the individual frequency components fuse, so that they are perceived as one sound source with a pitch at the fundamental frequency. Pitch is integral to separating auditory sources, as well as to speaker identification and speech understanding. A neural network model of pitch perception called SPINET (SPatial PItch NETwork) is developed and used to simulate a broader range of perceptual data than previous spectral models. The model employs a bank of narrowband filters as a simple model of basilar membrane mechanics, spectral on-center off-surround competitive interactions, and a "harmonic sieve" mechanism whereby the strength of a pitch depends only on spectral regions near harmonics. The model is evaluated using data involving mistuned components, shifted harmonics, complex tones with varying phase relationships, and continuous spectra such as rippled noise and narrow noise bands.

  9. Mass-conserved volumetric lattice Boltzmann method for complex flows with willfully moving boundaries.

    PubMed

    Yu, Huidan; Chen, Xi; Wang, Zhiqiang; Deep, Debanjan; Lima, Everton; Zhao, Ye; Teague, Shawn D

    2014-06-01

    In this paper, we develop a mass-conserved volumetric lattice Boltzmann method (MCVLBM) for numerically solving fluid dynamics with willfully moving arbitrary boundaries. In MCVLBM, fluid particles are uniformly distributed in lattice cells and the lattice Boltzmann equations deal with the time evolution of the particle distribution function. By introducing a volumetric parameter P(x,y,z,t) defined as the occupation of solid volume in the cell, we distinguish three types of lattice cells in the simulation domain: solid cell (pure solid occupation, P=1), fluid cell (pure fluid occupation, P=0), and boundary cell (partial solid and partial fluid, 0

  10. Generating Inviscid and Viscous Fluid-Flow Simulations over an Aircraft Surface Using a Fluid-Flow Mesh

    NASA Technical Reports Server (NTRS)

    Rodriguez, David L. (Inventor); Sturdza, Peter (Inventor)

    2013-01-01

    Fluid-flow simulation over a computer-generated aircraft surface is generated using inviscid and viscous simulations. A fluid-flow mesh of fluid cells is obtained. At least one inviscid fluid property for the fluid cells is determined using an inviscid fluid simulation that does not simulate fluid viscous effects. A set of intersecting fluid cells that intersects the aircraft surface are identified. One surface mesh polygon of the surface mesh is identified for each intersecting fluid cell. A boundary-layer prediction point for each identified surface mesh polygon is determined. At least one boundary-layer fluid property for each boundary-layer prediction point is determined using the at least one inviscid fluid property of the corresponding intersecting fluid cell and a boundary-layer simulation that simulates fluid viscous effects. At least one updated fluid property for at least one fluid cell is determined using the at least one boundary-layer fluid property and the inviscid fluid simulation.

  11. Compiling and editing agricultural strata boundaries with remotely sensed imagery and map attribute data using graphics workstations

    NASA Technical Reports Server (NTRS)

    Cheng, Thomas D.; Angelici, Gary L.; Slye, Robert E.; Ma, Matt

    1991-01-01

    The USDA presently uses labor-intensive photographic interpretation procedures to delineate large geographical areas into manageable size sampling units for the estimation of domestic crop and livestock production. Computer software to automate the boundary delineation procedure, called the computer-assisted stratification and sampling (CASS) system, was developed using a Hewlett Packard color-graphics workstation. The CASS procedures display Thematic Mapper (TM) satellite digital imagery on a graphics display workstation as the backdrop for the onscreen delineation of sampling units. USGS Digital Line Graph (DLG) data for roads and waterways are displayed over the TM imagery to aid in identifying potential sample unit boundaries. Initial analysis conducted with three Missouri counties indicated that CASS was six times faster than the manual techniques in delineating sampling units.

  12. Solving da Vinci stereopsis with depth-edge-selective V2 cells

    PubMed Central

    Assee, Andrew; Qian, Ning

    2007-01-01

    We propose a new model for da Vinci stereopsis based on a coarse-to-fine disparity-energy computation in V1 and disparity-boundary-selective units in V2. Unlike previous work, our model contains only binocular cells, relies on distributed representations of disparity, and has a simple V1-to-V2 feedforward structure. We demonstrate with random dot stereograms that the V2 stage of our model is able to determine the location and the eye-of-origin of monocularly occluded regions and improve disparity map computation. We also examine a few related issues. First, we argue that since monocular regions are binocularly defined, they cannot generally be detected by monocular cells. Second, we show that our coarse-to-fine V1 model for conventional stereopsis explains double matching in Panum’s limiting case. This provides computational support to the notion that the perceived depth of a monocular bar next to a binocular rectangle may not be da Vinci stereopsis per se (Gillam et al., 2003). Third, we demonstrate that some stimuli previously deemed invalid have simple, valid geometric interpretations. Our work suggests that studies of da Vinci stereopsis should focus on stimuli more general than the bar-and-rectangle type and that disparity-boundary-selective V2 cells may provide a simple physiological mechanism for da Vinci stereopsis. PMID:17698163

  13. The Leaf Adaxial-Abaxial Boundary and Lamina Growth

    PubMed Central

    Nakata, Miyuki; Okada, Kiyotaka

    2013-01-01

    In multicellular organisms, boundaries have a role in preventing the intermingling of two different cell populations and in organizing the morphogenesis of organs and the entire organism. Plant leaves have two different cell populations, the adaxial (or upper) and abaxial (or lower) cell populations, and the boundary is considered to be important for lamina growth. At the boundary between the adaxial and abaxial epidermis, corresponding to the margin, margin-specific structures are developed and structurally separate the adaxial and abaxial epidermis from each other. The adaxial and abaxial cells are determined by the adaxial and abaxial regulatory genes (including transcription factors and small RNAs), respectively. Among many lamina-growth regulators identified by recent genetic analyses, it has been revealed that the phytohormone, auxin, and the WOX family transcription factors act at the adaxial-abaxial boundary downstream of the adaxial-abaxial pattern. Furthermore, mutant analyses of the WOX genes shed light on the role of the adaxial-abaxial boundary in preventing the mixing of the adaxial and abaxial features during lamina growth. In this review, we highlight the recent studies on the dual role of the adaxial-abaxial boundary. PMID:27137371

  14. Formation of Bragg band gaps in anisotropic phononic crystals analyzed with the empty lattice model

    DOE PAGES

    Wang, Yan -Feng; Maznev, Alexei; Laude, Vincent

    2016-05-11

    Bragg band gaps of phononic crystals generally, but not always, open at Brillouin zone boundaries. The commonly accepted explanation stems from the empty lattice model: assuming a small material contrast between the constituents of the unit cell, avoided crossings in the phononic band structure appear at frequencies and wavenumbers corresponding to band intersections; for scalar waves the lowest intersections coincide with boundaries of the first Brillouin zone. However, if a phononic crystal contains elastically anisotropic materials, its overall symmetry is not dictated solely by the lattice symmetry. We construct an empty lattice model for phononic crystals made of isotropic andmore » anisotropic materials, based on their slowness curves. We find that, in the anisotropic case, avoided crossings generally do not appear at the boundaries of traditionally defined Brillouin zones. Furthermore, the Bragg "planes" which give rise to phononic band gaps, are generally not flat planes but curved surfaces. Lastly, the same is found to be the case for avoided crossings between shear (transverse) and longitudinal bands in the isotropic case.« less

  15. Formation of Bragg band gaps in anisotropic phononic crystals analyzed with the empty lattice model

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Wang, Yan -Feng; Maznev, Alexei; Laude, Vincent

    Bragg band gaps of phononic crystals generally, but not always, open at Brillouin zone boundaries. The commonly accepted explanation stems from the empty lattice model: assuming a small material contrast between the constituents of the unit cell, avoided crossings in the phononic band structure appear at frequencies and wavenumbers corresponding to band intersections; for scalar waves the lowest intersections coincide with boundaries of the first Brillouin zone. However, if a phononic crystal contains elastically anisotropic materials, its overall symmetry is not dictated solely by the lattice symmetry. We construct an empty lattice model for phononic crystals made of isotropic andmore » anisotropic materials, based on their slowness curves. We find that, in the anisotropic case, avoided crossings generally do not appear at the boundaries of traditionally defined Brillouin zones. Furthermore, the Bragg "planes" which give rise to phononic band gaps, are generally not flat planes but curved surfaces. Lastly, the same is found to be the case for avoided crossings between shear (transverse) and longitudinal bands in the isotropic case.« less

  16. Off-wall boundary conditions for turbulent flows obtained from buffer-layer minimal flow units

    NASA Astrophysics Data System (ADS)

    Garcia-Mayoral, Ricardo; Pierce, Brian; Wallace, James

    2012-11-01

    There is strong evidence that the transport processes in the buffer region of wall-bounded turbulence are common across various flow configurations, even in the embryonic turbulence in transition (Park et al., Phys. Fl. 24). We use this premise to develop off-wall boundary conditions for turbulent simulations. Boundary conditions are constructed from DNS databases using periodic minimal flow units and reduced order modeling. The DNS data was taken from a channel at Reτ = 400 and a zero-pressure gradient transitional boundary layer (Sayadi et al., submitted to J . FluidMech .) . Both types of boundary conditions were first tested on a DNS of the core of the channel flow with the aim of extending their application to LES and to spatially evolving flows. 2012 CTR Summer Program.

  17. Long-lived force patterns and deformation waves at repulsive epithelial boundaries

    NASA Astrophysics Data System (ADS)

    Rodríguez-Franco, Pilar; Brugués, Agustí; Marín-Llauradó, Ariadna; Conte, Vito; Solanas, Guiomar; Batlle, Eduard; Fredberg, Jeffrey J.; Roca-Cusachs, Pere; Sunyer, Raimon; Trepat, Xavier

    2017-10-01

    For an organism to develop and maintain homeostasis, cell types with distinct functions must often be separated by physical boundaries. The formation and maintenance of such boundaries are commonly attributed to mechanisms restricted to the cells lining the boundary. Here we show that, besides these local subcellular mechanisms, the formation and maintenance of tissue boundaries involves long-lived, long-ranged mechanical events. Following contact between two epithelial monolayers expressing, respectively, EphB2 and its ligand ephrinB1, both monolayers exhibit oscillatory patterns of traction forces and intercellular stresses that tend to pull cell-matrix adhesions away from the boundary. With time, monolayers jam, accompanied by the emergence of deformation waves that propagate away from the boundary. This phenomenon is not specific to EphB2/ephrinB1 repulsion but is also present during the formation of boundaries with an inert interface and during fusion of homotypic epithelial layers. Our findings thus unveil a global physical mechanism that sustains tissue separation independently of the biochemical and mechanical features of the local tissue boundary.

  18. Numerical generation of two-dimensional grids by the use of Poisson equations with grid control at boundaries

    NASA Technical Reports Server (NTRS)

    Sorenson, R. L.; Steger, J. L.

    1980-01-01

    A method for generating boundary-fitted, curvilinear, two dimensional grids by the use of the Poisson equations is presented. Grids of C-type and O-type were made about airfoils and other shapes, with circular, rectangular, cascade-type, and other outer boundary shapes. Both viscous and inviscid spacings were used. In all cases, two important types of grid control can be exercised at both inner and outer boundaries. First is arbitrary control of the distances between the boundaries and the adjacent lines of the same coordinate family, i.e., stand-off distances. Second is arbitrary control of the angles with which lines of the opposite coordinate family intersect the boundaries. Thus, both grid cell size (or aspect ratio) and grid cell skewness are controlled at boundaries. Reasonable cell size and shape are ensured even in cases wherein extreme boundary shapes would tend to cause skewness or poorly controlled grid spacing. An inherent feature of the Poisson equations is that lines in the interior of the grid smoothly connect the boundary points (the grid mapping functions are second order differentiable).

  19. Recombination activity of grain boundaries in high-performance multicrystalline Si during solar cell processing

    NASA Astrophysics Data System (ADS)

    Adamczyk, Krzysztof; Søndenâ, Rune; Stokkan, Gaute; Looney, Erin; Jensen, Mallory; Lai, Barry; Rinio, Markus; Di Sabatino, Marisa

    2018-02-01

    In this work, we applied internal quantum efficiency mapping to study the recombination activity of grain boundaries in High Performance Multicrystalline Silicon under different processing conditions. Wafers were divided into groups and underwent different thermal processing, consisting of phosphorus diffusion gettering and surface passivation with hydrogen rich layers. After these thermal treatments, wafers were processed into heterojunction with intrinsic thin layer solar cells. Light Beam Induced Current and Electron Backscatter Diffraction were applied to analyse the influence of thermal treatment during standard solar cell processing on different types of grain boundaries. The results show that after cell processing, most random-angle grain boundaries in the material are well passivated, but small-angle grain boundaries are not well passivated. Special cases of coincidence site lattice grain boundaries with high recombination activity are also found. Based on micro-X-ray fluorescence measurements, a change in the contamination level is suggested as the reason behind their increased activity.

  20. A Comparative Experimental Study of Fixed Temperature and Fixed Heat Flux Boundary Conditions in Turbulent Thermal Convection

    NASA Astrophysics Data System (ADS)

    Huang, Shi-Di; Wang, Fei; Xi, Heng-Dong; Xia, Ke-Qing

    2014-11-01

    We report an experimental study of the influences of thermal boundary condition in turbulent thermal convection. Two configurations were examined: one was fixed heat flux at the bottom boundary and fixed temperature at the top (HC cells); the other was fixed temperature at both boundaries (CC cells). It is found that the flow strength in the CC cells is on average 9% larger than that in the HC ones, which could be understood as change in plume emission ability under different boundary conditions. It is further found, rather surprisingly, that flow reversals of the large-scale circulation occur more frequently in the CC cell, despite a stronger large-scale flow and more uniform temperature distribution over the boundaries. These findings provide new insights into turbulent thermal convection and should stimulate further studies, especially experimental ones. This work is supported by the Hong Kong Research Grants Council under Grant No. CUHK 403712.

  1. 75 FR 13142 - Florida Power and Light Company; Turkey Point, Units 3 and 4; Exemption

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-18

    ... Light Company; Turkey Point, Units 3 and 4; Exemption 1.0 Background Florida Power and Light Company... ferritic materials of pressure-retaining components of the reactor coolant pressure boundary of light water... reactor coolant pressure boundary of light water nuclear power reactors to provide adequate margins of...

  2. 15 CFR Appendix Vii to Subpart P... - Areas To Be Avoided Boundary Coordinates

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ....10′ W In the Vicinity of Key West Harbor [Reference Chart: United States 11434, 21st Edition—August... COMMERCE OCEAN AND COASTAL RESOURCE MANAGEMENT NATIONAL MARINE SANCTUARY PROGRAM REGULATIONS Florida Keys... Avoided Boundary Coordinates In The Vicinity of the Florida Keys [Reference Charts: United States 11466...

  3. High performance hybrid functional Petri net simulations of biological pathway models on CUDA.

    PubMed

    Chalkidis, Georgios; Nagasaki, Masao; Miyano, Satoru

    2011-01-01

    Hybrid functional Petri nets are a wide-spread tool for representing and simulating biological models. Due to their potential of providing virtual drug testing environments, biological simulations have a growing impact on pharmaceutical research. Continuous research advancements in biology and medicine lead to exponentially increasing simulation times, thus raising the demand for performance accelerations by efficient and inexpensive parallel computation solutions. Recent developments in the field of general-purpose computation on graphics processing units (GPGPU) enabled the scientific community to port a variety of compute intensive algorithms onto the graphics processing unit (GPU). This work presents the first scheme for mapping biological hybrid functional Petri net models, which can handle both discrete and continuous entities, onto compute unified device architecture (CUDA) enabled GPUs. GPU accelerated simulations are observed to run up to 18 times faster than sequential implementations. Simulating the cell boundary formation by Delta-Notch signaling on a CUDA enabled GPU results in a speedup of approximately 7x for a model containing 1,600 cells.

  4. System for conversion between the boundary representation model and a constructive solid geometry model of an object

    DOEpatents

    Christensen, N.C.; Emery, J.D.; Smith, M.L.

    1985-04-29

    A system converts from the boundary representation of an object to the constructive solid geometry representation thereof. The system converts the boundary representation of the object into elemental atomic geometrical units or I-bodies which are in the shape of stock primitives or regularized intersections of stock primitives. These elemental atomic geometrical units are then represented in symbolic form. The symbolic representations of the elemental atomic geometrical units are then assembled heuristically to form a constructive solid geometry representation of the object usable for manufacturing thereof. Artificial intelligence is used to determine the best constructive solid geometry representation from the boundary representation of the object. Heuristic criteria are adapted to the manufacturing environment for which the device is to be utilized. The surface finish, tolerance, and other information associated with each surface of the boundary representation of the object are mapped onto the constructive solid geometry representation of the object to produce an enhanced solid geometry representation, particularly useful for computer-aided manufacture of the object. 19 figs.

  5. Detecting kinematic boundary surfaces in phase space: particle mass measurements in SUSY-like events

    DOE PAGES

    Debnath, Dipsikha; Gainer, James S.; Kilic, Can; ...

    2017-06-19

    We critically examine the classic endpoint method for particle mass determination, focusing on difficult corners of parameter space, where some of the measurements are not independent, while others are adversely affected by the experimental resolution. In such scenarios, mass differences can be measured relatively well, but the overall mass scale remains poorly constrained. Using the example of the standard SUSY decay chain q ~→χ ~ 0 2→ℓ ~→χ ~ 0 1 , we demonstrate that sensitivity to the remaining mass scale parameter can be recovered by measuring the two-dimensional kinematical boundary in the relevant three-dimensional phase space of invariant massesmore » squared. We develop an algorithm for detecting this boundary, which uses the geometric properties of the Voronoi tessellation of the data, and in particular, the relative standard deviation (RSD) of the volumes of the neighbors for each Voronoi cell in the tessellation. We propose a new observable, Σ¯ , which is the average RSD per unit area, calculated over the hypothesized boundary. We show that the location of the Σ¯ maximum correlates very well with the true values of the new particle masses. Our approach represents the natural extension of the one-dimensional kinematic endpoint method to the relevant three dimensions of invariant mass phase space.« less

  6. Detecting kinematic boundary surfaces in phase space: particle mass measurements in SUSY-like events

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Debnath, Dipsikha; Gainer, James S.; Kilic, Can

    We critically examine the classic endpoint method for particle mass determination, focusing on difficult corners of parameter space, where some of the measurements are not independent, while others are adversely affected by the experimental resolution. In such scenarios, mass differences can be measured relatively well, but the overall mass scale remains poorly constrained. Using the example of the standard SUSY decay chain q ~→χ ~ 0 2→ℓ ~→χ ~ 0 1 , we demonstrate that sensitivity to the remaining mass scale parameter can be recovered by measuring the two-dimensional kinematical boundary in the relevant three-dimensional phase space of invariant massesmore » squared. We develop an algorithm for detecting this boundary, which uses the geometric properties of the Voronoi tessellation of the data, and in particular, the relative standard deviation (RSD) of the volumes of the neighbors for each Voronoi cell in the tessellation. We propose a new observable, Σ¯ , which is the average RSD per unit area, calculated over the hypothesized boundary. We show that the location of the Σ¯ maximum correlates very well with the true values of the new particle masses. Our approach represents the natural extension of the one-dimensional kinematic endpoint method to the relevant three dimensions of invariant mass phase space.« less

  7. Detecting kinematic boundary surfaces in phase space: particle mass measurements in SUSY-like events

    NASA Astrophysics Data System (ADS)

    Debnath, Dipsikha; Gainer, James S.; Kilic, Can; Kim, Doojin; Matchev, Konstantin T.; Yang, Yuan-Pao

    2017-06-01

    We critically examine the classic endpoint method for particle mass determination, focusing on difficult corners of parameter space, where some of the measurements are not independent, while others are adversely affected by the experimental resolution. In such scenarios, mass differences can be measured relatively well, but the overall mass scale remains poorly constrained. Using the example of the standard SUSY decay chain \\tilde{q}\\to {\\tilde{χ}}_2^0\\to \\tilde{ℓ}\\to {\\tilde{χ}}_1^0 , we demonstrate that sensitivity to the remaining mass scale parameter can be recovered by measuring the two-dimensional kinematical boundary in the relevant three-dimensional phase space of invariant masses squared. We develop an algorithm for detecting this boundary, which uses the geometric properties of the Voronoi tessellation of the data, and in particular, the relative standard deviation (RSD) of the volumes of the neighbors for each Voronoi cell in the tessellation. We propose a new observable, \\overline{Σ} , which is the average RSD per unit area, calculated over the hypothesized boundary. We show that the location of the \\overline{Σ} maximum correlates very well with the true values of the new particle masses. Our approach represents the natural extension of the one-dimensional kinematic endpoint method to the relevant three dimensions of invariant mass phase space.

  8. Local and Cumulative Impervious Cover of Massachusetts Stream Basins

    USGS Publications Warehouse

    Brandt, Sara L.; Steeves, Peter A.

    2009-01-01

    Impervious surfaces such as paved roads, parking lots, and building roofs can affect the natural streamflow patterns and ecosystems of nearby streams. This dataset summarizes the percentage of impervious area for watersheds across Massachusetts by using a newly available statewide 1-m binary raster dataset of impervious surface for 2005. In order to accurately capture the wide spatial variability of impervious surface, it was necessary to delineate a new set of finely discretized basin boundaries for Massachusetts. This new set of basins was delineated at a scale finer than that of the existing 12-digit Hydrologic Unit Code basins (HUC-12s) of the national Watershed Boundary Dataset. The dataset consists of three GIS shapefiles. The Massachusetts nested subbasins and the hydrologic units data layers consist of topographically delineated boundaries and their associated percentage of impervious cover for all of Massachusetts except Cape Cod, the Islands, and the Plymouth-Carver region. The Massachusetts groundwater-contributing areas data layer consists of groundwater contributing-area boundaries for streams and coastal areas of Cape Cod and the Plymouth-Carver region. These boundaries were delineated by using groundwater-flow models previously published by the U.S. Geological Survey. Subbasin and hydrologic unit boundaries were delineated statewide with the exception of Cape Cod and the Plymouth-Carver Region. For the purpose of this study, a subbasin is defined as the entire drainage area upstream of an outlet point. Subbasins draining to multiple outlet points on the same stream are nested. That is, a large downstream subbasin polygon comprises all of the smaller upstream subbasin polygons. A hydrologic unit is the intervening drainage area between a given outlet point and the outlet point of the next upstream unit (Fig. 1). Hydrologic units divide subbasins into discrete, nonoverlapping areas. Each hydrologic unit corresponds to a subbasin delineated from the same outlet point; the hydrologic unit and the subbasin share the same unique identifier attribute. Because the same set of outlet points was used for the delineation of subbasins and hydrologic units, the linework for both data layers is identical; however, polygon attributes differ because for a given outlet point, the subbasin polygon area is the sum of all the upstream hydrologic units. Impervious surface summarized for a subbasin represents the percentage of impervious surface area of the entire upstream watershed, whereas the impervious surface for a hydrologic unit represents the percentage of impervious surface area for the intervening drainage area between two outlet points.

  9. Two Beam Energy Exchange in Hybrid Liquid Crystal Cells with Photorefractive Field Controlled Boundary Conditions (Postprint)

    DTIC Science & Technology

    2016-09-12

    AFRL-RX-WP-JA-2017-0209 TWO BEAM ENERGY EXCHANGE IN HYBRID LIQUID CRYSTAL CELLS WITH PHOTOREFRACTIVE FIELD CONTROLLED BOUNDARY...estimated to average 1 hour per response, including the time for reviewing instructions, searching existing data sources, gathering and maintaining the... CRYSTAL CELLS WITH PHOTOREFRACTIVE FIELD CONTROLLED BOUNDARY CONDITIONS (POSTPRINT) 5a. CONTRACT NUMBER FA8650-16-D-5402-0001 5b. GRANT

  10. Watershed Boundary Dataset for Mississippi

    USGS Publications Warehouse

    Wilson, K. Van; Clair, Michael G.; Turnipseed, D. Phil; Rebich, Richard A.

    2009-01-01

    The U.S. Geological Survey, in cooperation with the Mississippi Department of Environmental Quality, U.S. Department of Agriculture-Natural Resources Conservation Service, Mississippi Department of Transportation, U.S. Department of Agriculture-Forest Service, and the Mississippi Automated Resource Information System developed a 1:24,000-scale Watershed Boundary Dataset for Mississippi including watershed and subwatershed boundaries, codes, names, and areas. The Watershed Boundary Dataset for Mississippi provides a standard geographical framework for water-resources and selected land-resources planning. The original 8-digit subbasins (Hydrologic Unit Codes) were further subdivided into 10-digit watersheds (62.5 to 391 square miles (mi2)) and 12-digit subwatersheds (15.6 to 62.5 mi2) - the exceptions being the Delta part of Mississippi and the Mississippi River inside levees, which were subdivided into 10-digit watersheds only. Also, large water bodies in the Mississippi Sound along the coast were not delineated as small as a typical 12-digit subwatershed. All of the data - including watershed and subwatershed boundaries, subdivision codes and names, and drainage-area data - are stored in a Geographic Information System database, which are available at: http://ms.water.usgs.gov/. This map shows information on drainage and hydrography in the form of U.S. Geological Survey hydrologic unit boundaries for water-resource 2-digit regions, 4-digit subregions, 6-digit basins (formerly called accounting units), 8-digit subbasins (formerly called cataloging units), 10-digit watershed, and 12-digit subwatersheds in Mississippi. A description of the project study area, methods used in the development of watershed and subwatershed boundaries for Mississippi, and results are presented in Wilson and others (2008). The data presented in this map and by Wilson and others (2008) supersede the data presented for Mississippi by Seaber and others (1987) and U.S. Geological Survey (1977).

  11. High-Speed Particle-in-Cell Simulation Parallelized with Graphic Processing Units for Low Temperature Plasmas for Material Processing

    NASA Astrophysics Data System (ADS)

    Hur, Min Young; Verboncoeur, John; Lee, Hae June

    2014-10-01

    Particle-in-cell (PIC) simulations have high fidelity in the plasma device requiring transient kinetic modeling compared with fluid simulations. It uses less approximation on the plasma kinetics but requires many particles and grids to observe the semantic results. It means that the simulation spends lots of simulation time in proportion to the number of particles. Therefore, PIC simulation needs high performance computing. In this research, a graphic processing unit (GPU) is adopted for high performance computing of PIC simulation for low temperature discharge plasmas. GPUs have many-core processors and high memory bandwidth compared with a central processing unit (CPU). NVIDIA GeForce GPUs were used for the test with hundreds of cores which show cost-effective performance. PIC code algorithm is divided into two modules which are a field solver and a particle mover. The particle mover module is divided into four routines which are named move, boundary, Monte Carlo collision (MCC), and deposit. Overall, the GPU code solves particle motions as well as electrostatic potential in two-dimensional geometry almost 30 times faster than a single CPU code. This work was supported by the Korea Institute of Science Technology Information.

  12. Phase I Flow and Transport Model Document for Corrective Action Unit 97: Yucca Flat/Climax Mine, Nevada National Security Site, Nye County, Nevada, Revision 1 with ROTCs 1 and 2

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Andrews, Robert

    The Underground Test Area (UGTA) Corrective Action Unit (CAU) 97, Yucca Flat/Climax Mine, in the northeast part of the Nevada National Security Site (NNSS) requires environmental corrective action activities to assess contamination resulting from underground nuclear testing. These activities are necessary to comply with the UGTA corrective action strategy (referred to as the UGTA strategy). The corrective action investigation phase of the UGTA strategy requires the development of groundwater flow and contaminant transport models whose purpose is to identify the lateral and vertical extent of contaminant migration over the next 1,000 years. In particular, the goal is to calculate themore » contaminant boundary, which is defined as a probabilistic model-forecast perimeter and a lower hydrostratigraphic unit (HSU) boundary that delineate the possible extent of radionuclide-contaminated groundwater from underground nuclear testing. Because of structural uncertainty in the contaminant boundary, a range of potential contaminant boundaries was forecast, resulting in an ensemble of contaminant boundaries. The contaminant boundary extent is determined by the volume of groundwater that has at least a 5 percent chance of exceeding the radiological standards of the Safe Drinking Water Act (SDWA) (CFR, 2012).« less

  13. Scattering of particles in the presence of harmonic confinement perturbed by a complex absorbing potential

    NASA Astrophysics Data System (ADS)

    Maghari, A.; Kermani, M. M.

    2018-04-01

    A system of two interacting atoms confined in 1D harmonic trap and perturbed by an absorbing boundary potential is studied using the Lippmann-Schwinger formalism. The atom-atom interaction potential was considered as a nonlocal separable model. The perturbed absorbing boundary potential was also assumed in the form of Scarf II complex absorbing potential. The model is used for the study of 1D optical lattices that support the trapping of a pair atom within a unit cell. Moreover, it allows to describe the scattering particles in a tight smooth trapping surface and to analyze the bound and resonance states. The analytical expressions for wavefunctions and transition matrix as well as the absorption probabilities are calculated. A demonstration of how the complex absorbing potential affecting the bound states and resonances of particles confined in a harmonic trap is described.

  14. Electric-field-induced phase transformation at a lead-free morphotropic phase boundary: Case study in a 93%(Bi0.5Na0.5)TiO3-7% BaTiO3 piezoelectric ceramic

    NASA Astrophysics Data System (ADS)

    Daniels, John E.; Jo, Wook; Rödel, Jürgen; Jones, Jacob L.

    2009-07-01

    The electric-field-induced strain in 93%(Bi0.5Na0.5)TiO3-7%BaTiO3 polycrystalline ceramic is shown to be the result of an electric-field-induced phase transformation from a pseudocubic to tetragonal symmetry. High-energy x-ray diffraction is used to illustrate the microstructural nature of the transformation. A combination of induced unit cell volumetric changes, domain texture, and anisotropic lattice strains are responsible for the observed macroscopic strain. This strain mechanism is not analogous to the high electric-field-induced strains observed in lead-based morphotropic phase boundary systems. Thus, systems which appear cubic under zero field should not be excluded from the search for lead-free piezoelectric compositions.

  15. SEASONAL MODELING OF THE EXPORT OF POLLUTANTS FROM NORTH AMERICA USING THE MULTI-SCALE AIR QUALITY SIMULATION PLATFORM (MAQSIP)

    EPA Science Inventory

    Attention in recent years has focused on the trans-boundary transport of ozone and fine particulate matte between the United States and Mexico and Canada and across state boundaries in the United States. In a similar manner, but on a larger spatial scale, the export of pollutant...

  16. 78 FR 263 - Safety Zones; TEMCO Grain Facilities; Columbia and Willamette Rivers

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-03

    ...'01'' W. In essence, these boundaries extend from the shoreline of the facility 150 yards onto the...'' N/122-40'28'' W. In essence, these boundaries extend from the shoreline of the facility 150 yards... criminal laws of the United States. (2) Navigable waters of the United States means those waters defined as...

  17. Uncertainties in radon related to house-specific factors and proximity to geological boundaries in England.

    PubMed

    Hunter, Nezahat; Muirhead, Colin R; Miles, Jon C H; Appleton, J Donald

    2009-08-01

    Data collected as a part of a survey on radon concentrations from about 40 000 dwellings in England for six contrasting geological units were analysed to evaluate the impact of house-specific factors (building characteristics and construction dates) and of proximity to geological boundaries. After adjusting for temperature and outdoor radon, geological unit, house type, double glazing and date of building were found to have a statistically significant influence on indoor radon concentrations and explained about 29 % of the total variation between dwellings in logarithmically transformed radon values. In addition, there were statistically significant differences in radon concentrations according to proximity to geological boundaries categories for most of the geological units, but no consistent pattern could be detected.

  18. Efficient Creation of Overset Grid Hole Boundaries and Effects of Their Locations on Aerodynamic Loads

    NASA Technical Reports Server (NTRS)

    Chan, William Machado; Pandya, Shishir Ashok; Rogers, Stuart E.

    2013-01-01

    Recent developments on the automation of the X-rays approach to hole-cutting in over- set grids is further improved. A fast method to compute an auxiliary wall-distance function used in providing a rst estimate of the hole boundary location is introduced. Subsequent iterations lead to automatically-created hole boundaries with a spatially-variable o set from the minimum hole. For each hole boundary location, an averaged cell attribute measure over all fringe points is used to quantify the compatibility between the fringe points and their respective donor cells. The sensitivity of aerodynamic loads to di erent hole boundary locations and cell attribute compatibilities is investigated using four test cases: an isolated re-entry capsule, a two-rocket con guration, the AIAA 4th Drag Prediction Workshop Common Research Model (CRM), and the D8 \\Double Bubble" subsonic aircraft. When best practices in hole boundary treatment are followed, only small variations in integrated loads and convergence rates are observed for different hole boundary locations.

  19. Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root

    PubMed Central

    De Ruvo, Micol; Pacifici, Elena; Salvi, Elena; Sozzani, Rosangela; Benfey, Philip N.; Di Paola, Luisa; Marée, Athanasius F. M.; Costantino, Paolo; Grieneisen, Verônica A.; Sabatini, Sabrina

    2017-01-01

    In multicellular organisms, a stringent control of the transition between cell division and differentiation is crucial for correct tissue and organ development. In the Arabidopsis root, the boundary between dividing and differentiating cells is positioned by the antagonistic interaction of the hormones auxin and cytokinin. Cytokinin affects polar auxin transport, but how this impacts the positional information required to establish this tissue boundary, is still unknown. By combining computational modeling with molecular genetics, we show that boundary formation is dependent on cytokinin’s control on auxin polar transport and degradation. The regulation of both processes shapes the auxin profile in a well-defined auxin minimum. This auxin minimum positions the boundary between dividing and differentiating cells, acting as a trigger for this developmental transition, thus controlling meristem size. PMID:28831001

  20. Simulating reservoir leakage in ground-water models

    USGS Publications Warehouse

    Fenske, J.P.; Leake, S.A.; Prudic, David E.

    1997-01-01

    Leakage to ground water resulting from the expansion and contraction of reservoirs cannot be easily simulated by most ground-water flow models. An algorithm, entitled the Reservoir Package, was developed for the United States Geological Survey (USGS) three-dimensional finite-difference modular ground-water flow model MODFLOW. The Reservoir Package automates the process of specifying head-dependent boundary cells, eliminating the need to divide a simulation into many stress periods while improving accuracy in simulating changes in ground-water levels resulting from transient reservoir stage. Leakage between the reservoir and the underlying aquifer is simulated for each model cell corrresponding to the inundated area by multiplying the head difference between the reservoir and the aquifer with the hydraulic conductance of the reservoir-bed sediments.

  1. Geomorphology and depositional subenvironments of Gulf Islands National Seashore, Perdido Key and Santa Rosa Island, Florida

    USGS Publications Warehouse

    Morton, Robert A.; Montgomery, Marilyn C.

    2010-01-01

    The primary mapping procedures were supervised functions within a Geographic Information System (GIS) that were applied to delineate and classify depositional subenvironments and features, collectively referred to as map units. The delineated boundaries of the map units were exported to create one shapefile, and are differentiated by the field "Type" in the associated attribute table. Map units were delineated and classified based on differences in tonal patterns of features in contrast to adjacent features observed on orthophotography. Land elevations from recent lidar surveys served as supplementary data to assist in delineating the map unit boundaries.

  2. Detection and measurement of tubulitis in renal allograft rejection

    NASA Astrophysics Data System (ADS)

    Hiller, John B.; Chen, Qi; Jin, Jesse S.; Wang, Yung; Yong, James L. C.

    1997-04-01

    Tubulitis is one of the most reliable signs of acute renal allograft rejection. It occurs when mononuclear cells are localized between the lining tubular epithelial cells with or without disruption of the tubular basement membrane. It has been found that tubulitis takes place predominantly in the regions of the distal convoluted tubules and the cortical collecting system. The image processing tasks are to find the tubule boundaries and to find the relative location of the lymphocytes and epithelial cells and tubule boundaries. The requirement for accuracy applies to determining the relative locations of the lymphocytes and the tubule boundaries. This paper will show how the different sizes and grey values of the lymphocytes and epithelial cells simplify their identification and location. Difficulties in finding the tubule boundaries image processing will be illustrated. It will be shown how proximate location of epithelial cells and the tubule boundary leads to distortion in determination of the calculated boundary. However, in tubulitis the lymphocytes and the tubule boundaries are proximate.In these cases the tubule boundary is adequately resolved and the image processing is satisfactory to determining relativity in location. An adaptive non-linear anisotropic diffusion process is presented for image filtering and segmentation. Multi-layer analysis is used to extract lymphocytes and tubulitis from images. This paper will discuss grading of tissue using the Banff system. The ability to use computer to use computer processing will be argued as obviating problems of reproducability of values for this classification. This paper will also feature discussion of alternative approaches to image processing and provide an assessment of their capability for improving the identification of the tubule boundaries.

  3. Drosophila bunched integrates opposing DPP and EGF signals to set the operculum boundary.

    PubMed

    Dobens, L L; Peterson, J S; Treisman, J; Raftery, L A

    2000-02-01

    The Drosophila BMP homolog DPP can function as a morphogen, inducing multiple cell fates across a developmental field. However, it is unknown how graded levels of extracellular DPP are interpreted to organize a sharp boundary between different fates. Here we show that opposing DPP and EGF signals set the boundary for an ovarian follicle cell fate. First, DPP regulates gene expression in the follicle cells that will create the operculum of the eggshell. DPP induces expression of the enhancer trap reporter A359 and represses expression of bunched, which encodes a protein similar to the mammalian transcription factor TSC-22. Second, DPP signaling indirectly regulates A359 expression in these cells by downregulating expression of bunched. Reduced bunched function restores A359 expression in cells that lack the Smad protein MAD; ectopic expression of BUNCHED suppresses A359 expression in this region. Importantly, reduction of bunched function leads to an expansion of the operculum and loss of the collar at its boundary. Third, EGF signaling upregulates expression of bunched. We previously demonstrated that the bunched expression pattern requires the EGF receptor ligand GURKEN. Here we show that activated EGF receptor is sufficient to induce ectopic bunched expression. Thus, the balance of DPP and EGF signals sets the boundary of bunched expression. We propose that the juxtaposition of cells with high and low BUNCHED activity organizes a sharp boundary for the operculum fate.

  4. Space filling minimal surfaces and sphere packings

    NASA Astrophysics Data System (ADS)

    Elser, Veit

    1994-05-01

    A space filling minimal surface is defined to be any embedded minimal surface without boundary with the property that the area and genus enclosed by any large spherical region scales in proportion to the volume of the region. The triply periodic minimal surfaces are one realization, but not necessarily the only one. By using the genus per unit volume of the surface, a meaningful comparison of surface areas can be made even in cases where there is no unit cell. Of the known periodic minimal surfaces this measure of the surface area is smallest for Schoen's FRD surface. This surface is one of several that is closely related to packings of spheres. Its low area is largely due to the fact that the corresponding sphere packing (fcc) has the maximal kissing number.

  5. Modeling and measurement of the performance of a branched conduit sampling system in a mass spectrometer leak detector

    NASA Technical Reports Server (NTRS)

    Russell, John M.

    1994-01-01

    In the leak testing of a large engineering system, one may distinguish three stages, namely leakage measurement by an overall enclosure, leak location, and leakage measurement by a local enclosure. Sniffer probes attached to helium mass spectrometer leak detectors are normally designed for leak location, a qualitative inspection technique intended to pinpoint where a leak is but not to quantify its rate of discharge. The main conclusion of the present effort is that local leakage measurement by a leak detector with a sniffer probe is feasible provided one has: (1) quantitative data on the performance of the mass separator cell (a device interior to the unit where the stream of fluid in the sample line branches); and (2) a means of stabilizing the mass transfer boundary layer that is created near a local leak site when a sniffer probe is placed in its immediate vicinity. Theoretical models of the mass separator cell are provided and measurements of the machine-specific parameters in the formulas are presented. A theoretical model of a porous probe end for stabilizing the mass transfer boundary is also presented.

  6. Tagging and tracking individual networks within a complex mitochondrial web with photoactivatable GFP.

    PubMed

    Twig, Gilad; Graf, Solomon A; Wikstrom, Jakob D; Mohamed, Hibo; Haigh, Sarah E; Elorza, Alvaro; Deutsch, Motti; Zurgil, Naomi; Reynolds, Nicole; Shirihai, Orian S

    2006-07-01

    Assembly of mitochondria into networks supports fuel metabolism and calcium transport and is involved in the cellular response to apoptotic stimuli. A mitochondrial network is defined as a continuous matrix lumen whose boundaries limit molecular diffusion. Observation of individual networks has proven challenging in live cells that possess dense populations of mitochondria. Investigation into the electrical and morphological properties of mitochondrial networks has therefore not yielded consistent conclusions. In this study we used matrix-targeted, photoactivatable green fluorescent protein to tag single mitochondrial networks. This approach, coupled with real-time monitoring of mitochondrial membrane potential, permitted the examination of matrix lumen continuity and fusion and fission events over time. We found that adjacent and intertwined mitochondrial structures often represent a collection of distinct networks. We additionally found that all areas of a single network are invariably equipotential, suggesting that a heterogeneous pattern of membrane potential within a cell's mitochondria represents differences between discrete networks. Interestingly, fission events frequently occurred without any gross morphological changes and particularly without fragmentation. These events, which are invisible under standard confocal microscopy, redefine the mitochondrial network boundaries and result in electrically disconnected daughter units.

  7. Modeling and measurement of the performance of a branched conduit sampling system in a mass spectrometer leak detector

    NASA Astrophysics Data System (ADS)

    Russell, John M.

    1994-10-01

    In the leak testing of a large engineering system, one may distinguish three stages, namely leakage measurement by an overall enclosure, leak location, and leakage measurement by a local enclosure. Sniffer probes attached to helium mass spectrometer leak detectors are normally designed for leak location, a qualitative inspection technique intended to pinpoint where a leak is but not to quantify its rate of discharge. The main conclusion of the present effort is that local leakage measurement by a leak detector with a sniffer probe is feasible provided one has: (1) quantitative data on the performance of the mass separator cell (a device interior to the unit where the stream of fluid in the sample line branches); and (2) a means of stabilizing the mass transfer boundary layer that is created near a local leak site when a sniffer probe is placed in its immediate vicinity. Theoretical models of the mass separator cell are provided and measurements of the machine-specific parameters in the formulas are presented. A theoretical model of a porous probe end for stabilizing the mass transfer boundary is also presented.

  8. 2015 TRI National Analysis: Toxics Release Inventory Releases at Various Summary Levels

    EPA Pesticide Factsheets

    The TRI National Analysis is EPA's annual interpretation of TRI data at various summary levels. It highlights how toxic chemical wastes were managed, where toxic chemicals were released and how the 2015 TRI data compare to data from previous years. This dataset reports US state, county, large aquatic ecosystem, metro/micropolitan statistical area, and facility level statistics from 2015 TRI releases, including information on: number of 2015 TRI facilities in the geographic area and their releases (total, water, air, land); population information, including populations living within 1 mile of TRI facilities (total, minority, in poverty); and Risk Screening Environmental Indicators (RSEI) model related pounds, toxicity-weighted pounds, and RSEI score. The source of administrative boundary data is the 2013 cartographic boundary shapefiles. Location of facilities is provided by EPA's Facility Registry Service (FRS). Large Aquatic Ecosystems boundaries were dissolved from the hydrologic unit boundaries and codes for the United States, Puerto Rico, and the U.S. Virgin Islands. It was revised for inclusion in the National Atlas of the United States of America (November 2002), and updated to match the streams file created by the USGS National Mapping Division (NMD) for the National Atlas of the United States of America.

  9. Modeling conduction in host-graft interactions between stem cell grafts and cardiomyocytes.

    PubMed

    Chen, Michael Q; Yu, Jin; Whittington, R Hollis; Wu, Joseph C; Kovacs, Gregory T A; Giovangrandi, Laurent

    2009-01-01

    Cell therapy has recently made great strides towards aiding heart failure. However, while transplanted cells may electromechanically integrate into host tissue, there may not be a uniform propagation of a depolarization wave between the heterogeneous tissue boundaries. A model using microelectrode array technology that maps the electrical interactions between host and graft tissues in co-culture is presented and sheds light on the effects of having a mismatch of conduction properties at the boundary. Skeletal myoblasts co-cultured with cardiomyocytes demonstrated that conduction velocity significantly decreases at the boundary despite electromechanical coupling. In an attempt to improve the uniformity of conduction with host cells, differentiating human embryonic stem cells (hESC) were used in co-culture. Over the course of four to seven days, synchronous electrical activity was observed at the hESC boundary, implying differentiation and integration. Activity did not extend far past the boundary, and conduction velocity was significantly greater than that of the host tissue, implying the need for other external measures to properly match the conduction properties between host and graft tissue.

  10. A free-boundary model of a motile cell explains turning behavior.

    PubMed

    Nickaeen, Masoud; Novak, Igor L; Pulford, Stephanie; Rumack, Aaron; Brandon, Jamie; Slepchenko, Boris M; Mogilner, Alex

    2017-11-01

    To understand shapes and movements of cells undergoing lamellipodial motility, we systematically explore minimal free-boundary models of actin-myosin contractility consisting of the force-balance and myosin transport equations. The models account for isotropic contraction proportional to myosin density, viscous stresses in the actin network, and constant-strength viscous-like adhesion. The contraction generates a spatially graded centripetal actin flow, which in turn reinforces the contraction via myosin redistribution and causes retraction of the lamellipodial boundary. Actin protrusion at the boundary counters the retraction, and the balance of the protrusion and retraction shapes the lamellipodium. The model analysis shows that initiation of motility critically depends on three dimensionless parameter combinations, which represent myosin-dependent contractility, a characteristic viscosity-adhesion length, and a rate of actin protrusion. When the contractility is sufficiently strong, cells break symmetry and move steadily along either straight or circular trajectories, and the motile behavior is sensitive to conditions at the cell boundary. Scanning of a model parameter space shows that the contractile mechanism of motility supports robust cell turning in conditions where short viscosity-adhesion lengths and fast protrusion cause an accumulation of myosin in a small region at the cell rear, destabilizing the axial symmetry of a moving cell.

  11. Efficient Fluid Dynamic Design Optimization Using Cartesian Grids

    NASA Technical Reports Server (NTRS)

    Dadone, A.; Grossman, B.; Sellers, Bill (Technical Monitor)

    2004-01-01

    This report is subdivided in three parts. The first one reviews a new approach to the computation of inviscid flows using Cartesian grid methods. The crux of the method is the curvature-corrected symmetry technique (CCST) developed by the present authors for body-fitted grids. The method introduces ghost cells near the boundaries whose values are developed from an assumed flow-field model in vicinity of the wall consisting of a vortex flow, which satisfies the normal momentum equation and the non-penetration condition. The CCST boundary condition was shown to be substantially more accurate than traditional boundary condition approaches. This improved boundary condition is adapted to a Cartesian mesh formulation, which we call the Ghost Body-Cell Method (GBCM). In this approach, all cell centers exterior to the body are computed with fluxes at the four surrounding cell edges. There is no need for special treatment corresponding to cut cells which complicate other Cartesian mesh methods.

  12. Shape control and compartmentalization in active colloidal cells

    PubMed Central

    Spellings, Matthew; Engel, Michael; Klotsa, Daphne; Sabrina, Syeda; Drews, Aaron M.; Nguyen, Nguyen H. P.; Bishop, Kyle J. M.; Glotzer, Sharon C.

    2015-01-01

    Small autonomous machines like biological cells or soft robots can convert energy input into control of function and form. It is desired that this behavior emerges spontaneously and can be easily switched over time. For this purpose we introduce an active matter system that is loosely inspired by biology and which we term an active colloidal cell. The active colloidal cell consists of a boundary and a fluid interior, both of which are built from identical rotating spinners whose activity creates convective flows. Similarly to biological cell motility, which is driven by cytoskeletal components spread throughout the entire volume of the cell, active colloidal cells are characterized by highly distributed energy conversion. We demonstrate that we can control the shape of the active colloidal cell and drive compartmentalization by varying the details of the boundary (hard vs. flexible) and the character of the spinners (passive vs. active). We report buckling of the boundary controlled by the pattern of boundary activity, as well as formation of core–shell and inverted Janus phase-separated configurations within the active cell interior. As the cell size is increased, the inverted Janus configuration spontaneously breaks its mirror symmetry. The result is a bubble–crescent configuration, which alternates between two degenerate states over time and exhibits collective migration of the fluid along the boundary. Our results are obtained using microscopic, non–momentum-conserving Langevin dynamics simulations and verified via a phase-field continuum model coupled to a Navier–Stokes equation. PMID:26253763

  13. Shape control and compartmentalization in active colloidal cells.

    PubMed

    Spellings, Matthew; Engel, Michael; Klotsa, Daphne; Sabrina, Syeda; Drews, Aaron M; Nguyen, Nguyen H P; Bishop, Kyle J M; Glotzer, Sharon C

    2015-08-25

    Small autonomous machines like biological cells or soft robots can convert energy input into control of function and form. It is desired that this behavior emerges spontaneously and can be easily switched over time. For this purpose we introduce an active matter system that is loosely inspired by biology and which we term an active colloidal cell. The active colloidal cell consists of a boundary and a fluid interior, both of which are built from identical rotating spinners whose activity creates convective flows. Similarly to biological cell motility, which is driven by cytoskeletal components spread throughout the entire volume of the cell, active colloidal cells are characterized by highly distributed energy conversion. We demonstrate that we can control the shape of the active colloidal cell and drive compartmentalization by varying the details of the boundary (hard vs. flexible) and the character of the spinners (passive vs. active). We report buckling of the boundary controlled by the pattern of boundary activity, as well as formation of core-shell and inverted Janus phase-separated configurations within the active cell interior. As the cell size is increased, the inverted Janus configuration spontaneously breaks its mirror symmetry. The result is a bubble-crescent configuration, which alternates between two degenerate states over time and exhibits collective migration of the fluid along the boundary. Our results are obtained using microscopic, non-momentum-conserving Langevin dynamics simulations and verified via a phase-field continuum model coupled to a Navier-Stokes equation.

  14. Shape control and compartmentalization in active colloidal cells

    DOE PAGES

    Spellings, Matthew; Engel, Michael; Klotsa, Daphne; ...

    2015-08-07

    Small autonomous machines like biological cells or soft robots can convert energy input into control of function and form. It is desired that this behavior emerges spontaneously and can be easily switched over time. For this purpose, in this paper we introduce an active matter system that is loosely inspired by biology and which we term an active colloidal cell. The active colloidal cell consists of a boundary and a fluid interior, both of which are built from identical rotating spinners whose activity creates convective flows. Similarly to biological cell motility, which is driven by cytoskeletal components spread throughout themore » entire volume of the cell, active colloidal cells are characterized by highly distributed energy conversion. We demonstrate that we can control the shape of the active colloidal cell and drive compartmentalization by varying the details of the boundary (hard vs. flexible) and the character of the spinners (passive vs. active). We report buckling of the boundary controlled by the pattern of boundary activity, as well as formation of core–shell and inverted Janus phase-separated configurations within the active cell interior. As the cell size is increased, the inverted Janus configuration spontaneously breaks its mirror symmetry. The result is a bubble–crescent configuration, which alternates between two degenerate states over time and exhibits collective migration of the fluid along the boundary. Finally, our results are obtained using microscopic, non–momentum-conserving Langevin dynamics simulations and verified via a phase-field continuum model coupled to a Navier–Stokes equation.« less

  15. Hydrogen segregation to inclined Σ3 < 110 >twin grain boundaries in nickel

    DOE PAGES

    O’Brien, Christopher J.; Foiles, Stephen M.

    2016-08-04

    Low-mobility twin grain boundaries dominate the microstructure of grain boundary-engineered materials and are critical to understanding their plastic deformation behaviour. The presence of solutes, such as hydrogen, has a profound effect on the thermodynamic stability of the grain boundaries. This work examines the case of a Σ3 grain boundary at inclinations from 0° ≤ Φ ≤ 90°. The angle Φ corresponds to the rotation of the Σ3 (1 1 1) < 1 1 0 > (coherent) into the Σ3 (1 1 2) < 1 1 0 > (lateral) twin boundary. To this end, atomistic models of inclined grain boundaries, utilisingmore » empirical potentials, are used to elucidate the finite-temperature boundary structure while grand canonical Monte Carlo models are applied to determine the degree of hydrogen segregation. In order to understand the boundary structure and segregation behaviour of hydrogen, the structural unit description of inclined twin grain boundaries is found to provide insight into explaining the observed variation of excess enthalpy and excess hydrogen concentration on inclination angle, but the explanatory power is limited by how the enthalpy of segregation is affected by hydrogen concentration. At higher concentrations, the grain boundaries undergo a defaceting transition. In order to develop a more complete mesoscale model of the interfacial behaviour, an analytical model of boundary energy and hydrogen segregation that relies on modelling the boundary as arrays of discrete 1/3 < 1 1 1 > disconnections is constructed. Lastly, the complex interaction of boundary reconstruction and concentration-dependent segregation behaviour exhibited by inclined twin grain boundaries limits the range of applicability of such an analytical model and illustrates the fundamental limitations for a structural unit model description of segregation in lower stacking fault energy materials.« less

  16. Aerosolization of cyanobacterial cells across ecosystem boundaries in the McMurdo Dry Valleys, Antarctica

    NASA Astrophysics Data System (ADS)

    Trout-Haney, J.; Heindel, R. C.; Virginia, R. A.

    2017-12-01

    Cyanobacteria play a major ecological role in polar freshwaters, occurring predominately as small single cells in the water column, i.e., picocyanobacteria, or large multicellular colonies and mats that reside on the lake bottom. Cyanobacteria are also present in terrestrial polar habitats, including within soils, soil crusts, rocks, and glacial ice. Despite their predominance in polar ecosystems, the extent to which cyanobacteria move between terrestrial and aquatic landscape units remains poorly understood. In polar deserts such as the McMurdo Dry Valleys, aeolian processes influence terrestrial landscape morphology and drive the transport of sediments and other particles. Water surfaces can also act as a source of aerosolized particles, such as the production of sea spray aerosols through wave breaking in marine environments. However, aerosolization from freshwater bodies has been far less studied, especially in polar regions. We conducted a field-study to examine the transport of aerosolized cyanobacterial cells from ponds and soils in the McMurdo Dry Valleys. We used highly portable aerosol collection devices fitted with GF/F filters combusted at 500°C (0.3 µm) to collect small particles, such as picocyanobacteria (0.2 - 2 µm), from near-shore water and adjacent soil. We used epifluorescence microscopy to quantify aerosolized cells, with excitation filters for chlorophyll a (435 nm) and phycobilin pigments (572 nm), to distinguish cyanobacterial cells. We detected aerosolized picocyanobacterial cells from all ponds and soils sampled, indicating that these cells may be quite mobile and transported across ecosystem boundaries. We observed cyanobacterial cells individually, clustered, and associated with other organic material, suggesting multiple modes of cell transport. Further, we investigated the potential for aerosolization of toxin-producing cyanobacterial taxa (or unbound cyanotoxins), and the ecological and ecosystem-scale implications of aerosolization on cyanobacterial transport, cyanotoxin exposure, and nutrient cycling. Our results highlight the role of aerosolization in transporting cyanobacterial cells and suggest that even in extreme polar deserts, biological connectivity exists between aquatic and terrestrial habitats.

  17. 33 CFR 329.13 - Geographic limits: Shifting boundaries.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... area will remain “navigable in law,” even though no longer covered with water, whenever the change has...: Shifting boundaries. Permanent changes of the shoreline configuration result in similar alterations of the boundaries of the navigable waters of the United States. Thus, gradual changes which are due to natural...

  18. 33 CFR 329.13 - Geographic limits: Shifting boundaries.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... area will remain “navigable in law,” even though no longer covered with water, whenever the change has...: Shifting boundaries. Permanent changes of the shoreline configuration result in similar alterations of the boundaries of the navigable waters of the United States. Thus, gradual changes which are due to natural...

  19. 33 CFR 329.13 - Geographic limits: Shifting boundaries.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... area will remain “navigable in law,” even though no longer covered with water, whenever the change has...: Shifting boundaries. Permanent changes of the shoreline configuration result in similar alterations of the boundaries of the navigable waters of the United States. Thus, gradual changes which are due to natural...

  20. Listener Reliability in Assigning Utterance Boundaries in Children's Spontaneous Speech

    ERIC Educational Resources Information Center

    Stockman, Ida J.

    2010-01-01

    Research and clinical practices often rely on an utterance unit for spoken language analysis. This paper calls attention to the problems encountered when identifying utterance boundaries in young children's spontaneous conversational speech. The results of a reliability study of utterance boundary assignment are described for 20 females with…

  1. 77 FR 74781 - Safety Zones; Columbia Grain and United Grain Corporation Facilities; Columbia and Willamette Rivers

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-18

    ... 45-38'30'' N/122- 46'25'' W. In essence, these boundaries extend from the shoreline of the facility.../122-41'31'' W. In essence, these boundaries extend from the shoreline of the facility 150 yards onto... waters of the United States means those waters defined as such in 33 CFR part 2. (3) Navigation Rules...

  2. Federal standards and procedures for the National Watershed Boundary Dataset (WBD)

    USGS Publications Warehouse

    ,; ,; ,

    2013-01-01

    The Watershed Boundary Dataset (WBD) is a comprehensive aggregated collection of hydrologic unit data consistent with the national criteria for delineation and resolution. This document establishes Federal standards and procedures for creating the WBD as seamless and hierarchical hydrologic unit data, based on topographic and hydrologic features at a 1:24,000 scale in the United States, except for Alaska at 1:63,360 scale, and 1:25,000 scale in the Caribbean. The data within the WBD have been reviewed for certification through the 12-digit hydrologic unit for compliance with the criteria outlined in this document. Any edits to certified data will be reviewed against this standard prior to inclusion. Although not required as part of the framework WBD, the guidelines contain details for compiling and delineating the boundaries of two additional levels, the 14- and 16-digit hydrologic units, as well as the use of higher resolution base information to improve delineations. The guidelines presented herein are designed to enable local, regional, and national partners to delineate hydrologic units consistently and accurately. Such consistency improves watershed management through efficient sharing of information and resources and by ensuring that digital geographic data are usable with other related Geographic Information System (GIS) data.Terminology, definitions, and procedural information are provided to ensure uniformity in hydrologic unit boundaries, names, and numerical codes. Detailed standards and specifications for data are included. The document also includes discussion of objectives, communications required for revising the data resolution in the United States and the Caribbean, as well as final review and data-quality criteria. Instances of unusual landforms or artificial features that affect the hydrologic units are described with metadata standards. Up-to-date information and availability of the hydrologic units are listed at http:// www.nrcs.usda.gov/wps/portal/nrcs/detail/national/technical/ nra/dma/?&cid=nrcs143_021630/.

  3. Federal standards and procedures for the National Watershed Boundary Dataset (WBD)

    USGS Publications Warehouse

    U.S. Geological Survey and U.S. Department of Agriculture, Natural Resources Conservation Service

    2012-01-01

    The Watershed Boundary Dataset (WBD) is a comprehensive aggregated collection of hydrologic unit data consistent with the national criteria for delineation and resolution. This document establishes Federal standards and procedures for creating the WBD as seamless and hierarchical hydrologic unit data, based on topographic and hydrologic features at a 1:24,000 scale in the United States, except for Alaska at 1:63,360 scale, and 1:25,000 scale in the Caribbean. The data within the WBD have been reviewed for certification through the 12-digit hydrologic unit for compliance with the criteria outlined in this document. Any edits to certified data will be reviewed against this standard prior to inclusion. Although not required as part of the framework WBD, the guidelines contain details for compiling and delineating the boundaries of two additional levels, the 14- and 16-digit hydrologic units, as well as the use of higher resolution base information to improve delineations. The guidelines presented herein are designed to enable local, regional, and national partners to delineate hydrologic units consistently and accurately. Such consistency improves watershed management through efficient sharing of information and resources and by ensuring that digital geographic data are usable with other related Geographic Information System (GIS) data. Terminology, definitions, and procedural information are provided to ensure uniformity in hydrologic unit boundaries, names, and numerical codes. Detailed standards and specifications for data are included. The document also includes discussion of objectives, communications required for revising the data resolution in the United States and the Caribbean, as well as final review and data-quality criteria. Instances of unusual landforms or artificial features that affect the hydrologic units are described with metadata standards. Up-to-date information and availability of the hydrologic units are listed at http://www.nrcs.usda.gov/wps/portal/nrcs/detail/national/water/watersheds/?cid=nrcs143_021630/.

  4. Subband-Based Group Delay Segmentation of Spontaneous Speech into Syllable-Like Units

    NASA Astrophysics Data System (ADS)

    Nagarajan, T.; Murthy, H. A.

    2004-12-01

    In the development of a syllable-centric automatic speech recognition (ASR) system, segmentation of the acoustic signal into syllabic units is an important stage. Although the short-term energy (STE) function contains useful information about syllable segment boundaries, it has to be processed before segment boundaries can be extracted. This paper presents a subband-based group delay approach to segment spontaneous speech into syllable-like units. This technique exploits the additive property of the Fourier transform phase and the deconvolution property of the cepstrum to smooth the STE function of the speech signal and make it suitable for syllable boundary detection. By treating the STE function as a magnitude spectrum of an arbitrary signal, a minimum-phase group delay function is derived. This group delay function is found to be a better representative of the STE function for syllable boundary detection. Although the group delay function derived from the STE function of the speech signal contains segment boundaries, the boundaries are difficult to determine in the context of long silences, semivowels, and fricatives. In this paper, these issues are specifically addressed and algorithms are developed to improve the segmentation performance. The speech signal is first passed through a bank of three filters, corresponding to three different spectral bands. The STE functions of these signals are computed. Using these three STE functions, three minimum-phase group delay functions are derived. By combining the evidence derived from these group delay functions, the syllable boundaries are detected. Further, a multiresolution-based technique is presented to overcome the problem of shift in segment boundaries during smoothing. Experiments carried out on the Switchboard and OGI-MLTS corpora show that the error in segmentation is at most 25 milliseconds for 67% and 76.6% of the syllable segments, respectively.

  5. Federal standards and procedures for the National Watershed Boundary Dataset (WBD)

    USGS Publications Warehouse

    ,; ,; ,

    2009-03-11

    Terminology, definitions, and procedural information are provided to ensure uniformity in hydrologic unit boundaries, names, and numerical codes. Detailed standards and specifications for data are included. The document also includes discussion of objectives, communications required for revising the data resolution in the United States and the Caribbean, as well as final review and data-quality criteria. Instances of unusual landforms or artificial features that affect the hydrologic units are described with metadata standards. Up-to-date information and availability of the hydrologic units are listed athttp://www.nrcs.usda.gov/wps/portal/nrcs/detail/national/technical/nra/dma/?&cid=nrcs143_021630/.

  6. Molecular dynamics analysis of a equilibrium nanoscale droplet on a solid surface with periodic roughness

    NASA Astrophysics Data System (ADS)

    Furuta, Yuma; Surblys, Donatas; Yamaguchi, Yastaka

    2016-11-01

    Molecular dynamics simulations of the equilibrium wetting behavior of hemi-cylindrical argon droplets on solid surfaces with a periodic roughness were carried out. The rough solid surface is located at the bottom of the calculation cell with periodic boundary conditions in surface lateral directions and mirror boundary condition at the top boundary. Similar to on a smooth surface, the change of the cosine of the droplet contact angle was linearly correlated to the potential well depth of the inter-atomic interaction between liquid and solid on a surface with a short roughness period while the correlation was deviated on one with a long roughness period. To further investigate this feature, solid-liquid, solid-vapor interfacial free energies per unit projected area of solid surface were evaluated by using the thermodynamic integration method in independent quasi-one-dimensional simulation systems with a liquid-solid interface or vapor-solid interface on various rough solid surfaces at a constant pressure. The cosine of the apparent contact angles estimated from the density profile of the droplet systems corresponded well with ones calculated from Young's equation using the interfacial energies evaluated in the quasi-one dimensional systems.

  7. Formation mechanism of Ruddlesden-Popper-type antiphase boundaries during the kinetically limited growth of Sr rich SrTiO3 thin films

    PubMed Central

    Xu, Chencheng; Du, Hongchu; van der Torren, Alexander J. H.; Aarts, Jan; Jia, Chun-Lin; Dittmann, Regina

    2016-01-01

    We elucidated the formation process for Ruddlesden-Popper-type defects during pulsed laser deposition of Sr rich SrTiO3 thin films by a combined analysis of in-situ atomic force microscopy, low energy electron diffraction and high resolution scanning transmission electron microscopy. At the early growth stage of 1.5 unit cells, the excess Sr results in the formation of SrO on the surface, resulting in a local termination change from TiO2 to SrO, thereby forming a Sr rich (2 × 2) surface reconstruction. With progressive SrTiO3 growth, islands with thermodynamically stable SrO rock-salt structure are formed, coexisting with TiO2 terminated islands. During the overgrowth of these thermodynamically stable islands, both lateral as well as vertical Ruddlesden-Popper-type anti-phase boundaries are formed, accommodating the Sr excess of the SrTiO3 film. We suggest the formation of thermodynamically stable SrO rock-salt structures as origin for the formation of Ruddlesden-Popper-type antiphase boundaries, which are as a result of kinetic limitations confined to certain regions on the surface. PMID:27922069

  8. Formation mechanism of Ruddlesden-Popper-type antiphase boundaries during the kinetically limited growth of Sr rich SrTiO3 thin films

    NASA Astrophysics Data System (ADS)

    Xu, Chencheng; Du, Hongchu; van der Torren, Alexander J. H.; Aarts, Jan; Jia, Chun-Lin; Dittmann, Regina

    2016-12-01

    We elucidated the formation process for Ruddlesden-Popper-type defects during pulsed laser deposition of Sr rich SrTiO3 thin films by a combined analysis of in-situ atomic force microscopy, low energy electron diffraction and high resolution scanning transmission electron microscopy. At the early growth stage of 1.5 unit cells, the excess Sr results in the formation of SrO on the surface, resulting in a local termination change from TiO2 to SrO, thereby forming a Sr rich (2 × 2) surface reconstruction. With progressive SrTiO3 growth, islands with thermodynamically stable SrO rock-salt structure are formed, coexisting with TiO2 terminated islands. During the overgrowth of these thermodynamically stable islands, both lateral as well as vertical Ruddlesden-Popper-type anti-phase boundaries are formed, accommodating the Sr excess of the SrTiO3 film. We suggest the formation of thermodynamically stable SrO rock-salt structures as origin for the formation of Ruddlesden-Popper-type antiphase boundaries, which are as a result of kinetic limitations confined to certain regions on the surface.

  9. Correlation of regional geohydrologic units to geological formations in southern Missouri

    USGS Publications Warehouse

    Smith, Brenda J.; Imes, Jeffrey L.

    1991-01-01

    As part of the U.S Geological Survey's Regional Aquifer-System Analysis Program, geologic formations in southern Missouri (index map) were grouped into eight regional geohydrologic units on the basis of relative rock permeability and well yields (imes and Emmett, in press). Geohydrologic unit boundaries do not necessarily coincide with geologic unit boundaries or geologic time lines, but are determined by regional hydrologic properties, which may vary from one area to another.  The geologic formaitons were grouped into the geohydrologic units to determine the hydrologic characteristics of regional aquifer systems and associated regional confining units in parts of Arkansas, Kansas,Missouri, and Oklahoma.  This report presents a correlation of the regional geohydrologic units to corresponding geologic formations in southern Missouri.  Included in the report is a brief geologic history of southern Missouri.

  10. DOE Office of Scientific and Technical Information (OSTI.GOV)

    O’Brien, Christopher J.; Foiles, Stephen M.

    Low-mobility twin grain boundaries dominate the microstructure of grain boundary-engineered materials and are critical to understanding their plastic deformation behaviour. The presence of solutes, such as hydrogen, has a profound effect on the thermodynamic stability of the grain boundaries. This work examines the case of a Σ3 grain boundary at inclinations from 0° ≤ Φ ≤ 90°. The angle Φ corresponds to the rotation of the Σ3 (1 1 1) < 1 1 0 > (coherent) into the Σ3 (1 1 2) < 1 1 0 > (lateral) twin boundary. To this end, atomistic models of inclined grain boundaries, utilisingmore » empirical potentials, are used to elucidate the finite-temperature boundary structure while grand canonical Monte Carlo models are applied to determine the degree of hydrogen segregation. In order to understand the boundary structure and segregation behaviour of hydrogen, the structural unit description of inclined twin grain boundaries is found to provide insight into explaining the observed variation of excess enthalpy and excess hydrogen concentration on inclination angle, but the explanatory power is limited by how the enthalpy of segregation is affected by hydrogen concentration. At higher concentrations, the grain boundaries undergo a defaceting transition. In order to develop a more complete mesoscale model of the interfacial behaviour, an analytical model of boundary energy and hydrogen segregation that relies on modelling the boundary as arrays of discrete 1/3 < 1 1 1 > disconnections is constructed. Lastly, the complex interaction of boundary reconstruction and concentration-dependent segregation behaviour exhibited by inclined twin grain boundaries limits the range of applicability of such an analytical model and illustrates the fundamental limitations for a structural unit model description of segregation in lower stacking fault energy materials.« less

  11. Maintaining Professional Nursing Boundaries in the Pediatric Home Care Setting.

    PubMed

    Petosa, Sarah Diane

    Pediatric home care nurses often become a valuable part of the family unit, and this can blur the professional boundary between nurse and patient. Home care professionals must educate themselves as well as patients and family members about the integrity of their professional relationship, and prevent boundary crossing before it occurs. This article highlights four case studies that describe situations of boundary crossing that could have been managed differently. Strategies for maintaining professional boundaries with patients and their families are provided.

  12. ELIGULUM-A Regulates Lateral Branch and Leaf Development in Barley1[OPEN

    PubMed Central

    Haaning, Allison; Bilgic, Hatice

    2018-01-01

    The shoot apical and axillary meristems control shoot development, effectively influencing lateral branch and leaf formation. The barley (Hordeum vulgare) uniculm2 (cul2) mutation blocks axillary meristem development, and mutant plants lack lateral branches (tillers) that normally develop from the crown. A genetic screen for cul2 suppressors recovered two recessive alleles of ELIGULUM-A (ELI-A) that partially rescued the cul2 tillering phenotype. Mutations in ELI-A produce shorter plants with fewer tillers and disrupt the leaf blade-sheath boundary, producing liguleless leaves and reduced secondary cell wall development in stems and leaves. ELI-A is predicted to encode an unannotated protein containing an RNaseH-like domain that is conserved in land plants. ELI-A transcripts accumulate at the preligule boundary, the developing ligule, leaf margins, cells destined to develop secondary cell walls, and cells surrounding leaf vascular bundles. Recent studies have identified regulatory similarities between boundary development in leaves and lateral organs. Interestingly, we observed ELI-A transcripts at the preligule boundary, suggesting that ELI-A contributes to boundary formation between the blade and sheath. However, we did not observe ELI-A transcripts at the axillary meristem boundary in leaf axils, suggesting that ELI-A is not involved in boundary development for axillary meristem development. Our results show that ELI-A contributes to leaf and lateral branch development by acting as a boundary gene during ligule development but not during lateral branch development. PMID:29440592

  13. Coercivity temperature dependence of Sm2Co17-type sintered magnets with different cell and cell boundary microchemistry

    NASA Astrophysics Data System (ADS)

    Yu, Nengjun; Zhu, Minggang; Song, Liwei; Fang, Yikun; Song, KuiKui; Wang, Qiang; Li, Wei

    2018-04-01

    High maximum energy product ((BH)max) Sm(CobalFe0.18Cu0.07Zr0.03)7.7 magnet (type-A) and high temperature Sm(CobalFe0.1Cu0.09Zr0.03)7.2 magnet (type-B) were prepared by a traditional powder metallurgical technology. A record (BH)max of 98.7 kJ/m3 with a coercivity (Hcj) of 501.5 kA/m at 773 K was achieved for the type-B magnet, which is much higher than that of type-A magnet (63.7 kJ/m3). The microstructures of the magnets were revealed by high-resolution transmission electron microscope. The average cell size of the type-A and B magnet are 110 nm and 90 nm, respectively. Moreover, the type-B magnet shows a wider cell boundary than the type-A magnet. Additionally, the element distribution of the cell/cell boundary interfaces was measured by energy-dispersive spectroscopy. The cell phase of the type-A magnet contains a higher Fe content as about 17 at%, comparing with that of the type-B magnet (∼8.9 at%). On the other hand, the Cu content of the cell boundary phase is 18 at% almost twice higher than the type-B magnet (8.6 at%). Theoretical Hcj temperature dependence of these two kinds of magnets indicates that the lower Cu content in the cell boundary phase and the appropriate Fe content in the cell phase are the key factors for the high Hcj for the type-B magnet at elevated temperature.

  14. Objective Molecular Dynamics with Self-consistent Charge Density Functional Tight-Binding (SCC-DFTB) Method

    NASA Astrophysics Data System (ADS)

    Dumitrica, Traian; Hourahine, Ben; Aradi, Balint; Frauenheim, Thomas

    We discus the coupling of the objective boundary conditions into the SCC density functional-based tight binding code DFTB+. The implementation is enabled by a generalization to the helical case of the classical Ewald method, specifically by Ewald-like formulas that do not rely on a unit cell with translational symmetry. The robustness of the method in addressing complex hetero-nuclear nano- and bio-fibrous systems is demonstrated with illustrative simulations on a helical boron nitride nanotube, a screw dislocated zinc oxide nanowire, and an ideal double-strand DNA. Work supported by NSF CMMI 1332228.

  15. Prediction of the Stress-Strain Behavior of Open-Cell Aluminum Foam under Compressive Loading and the Effects of Various RVE Boundary Conditions

    NASA Astrophysics Data System (ADS)

    Hamidi Ghaleh Jigh, Behrang; Farsi, Mohammad Ali; Hosseini Toudeshky, Hossein

    2018-05-01

    The prediction of the mechanical behavior of metallic foams with realistic microstructure and the effects of various boundary conditions on the mechanical behavior is an important and challenging issue in modeling representative volume elements (RVEs). A numerical investigation is conducted to determine the effects of various boundary conditions and cell wall cross sections on the compressive mechanical properties of aluminum foam, including the stiffness, plateau stress and onset strain of densification. The open-cell AA6101-T6 aluminum foam Duocel is used in the analyses in this study. Geometrical characteristics including the cell size, foam relative density, and cross-sectional shape and thickness of the cell walls are extracted from images of the foam. Then, the obtained foam microstructure is analyzed as a 2D model. The ligaments are modeled as shear deformable beams with elastic-plastic material behavior. To prevent interpenetration of the nodes and walls inside the cells with large deformations, self-contact-type frictionless interaction is stipulated between the internal surfaces. Sensitivity analyses are performed using several boundary conditions and cells wall cross-sectional shapes. The predicted results from the finite element analyses are compared with the experimental results. Finally, the most appropriate boundary conditions, leading to more consistent results with the experimental data, are introduced.

  16. Prediction of the Stress-Strain Behavior of Open-Cell Aluminum Foam under Compressive Loading and the Effects of Various RVE Boundary Conditions

    NASA Astrophysics Data System (ADS)

    Hamidi Ghaleh Jigh, Behrang; Farsi, Mohammad Ali; Hosseini Toudeshky, Hossein

    2018-04-01

    The prediction of the mechanical behavior of metallic foams with realistic microstructure and the effects of various boundary conditions on the mechanical behavior is an important and challenging issue in modeling representative volume elements (RVEs). A numerical investigation is conducted to determine the effects of various boundary conditions and cell wall cross sections on the compressive mechanical properties of aluminum foam, including the stiffness, plateau stress and onset strain of densification. The open-cell AA6101-T6 aluminum foam Duocel is used in the analyses in this study. Geometrical characteristics including the cell size, foam relative density, and cross-sectional shape and thickness of the cell walls are extracted from images of the foam. Then, the obtained foam microstructure is analyzed as a 2D model. The ligaments are modeled as shear deformable beams with elastic-plastic material behavior. To prevent interpenetration of the nodes and walls inside the cells with large deformations, self-contact-type frictionless interaction is stipulated between the internal surfaces. Sensitivity analyses are performed using several boundary conditions and cells wall cross-sectional shapes. The predicted results from the finite element analyses are compared with the experimental results. Finally, the most appropriate boundary conditions, leading to more consistent results with the experimental data, are introduced.

  17. EnviroAtlas - NHDPlus V2 Hydrologic Unit Boundaries Web Service - Conterminous United States

    EPA Pesticide Factsheets

    This EnviroAtlas web service contains layers depicting hydrologic unit boundary layers and labels for the Subregion level (4-digit HUCs), Subbasin level (8-digit HUCs), and Subwatershed level (12-digit HUCs) for the conterminous United States. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  18. 50 CFR Appendix C to Part 404 - Boundary Coordinated for Papaha

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 11 2013-10-01 2013-10-01 false Boundary Coordinated for Papaha C Appendix C to Part 404 Wildlife and Fisheries JOINT REGULATIONS (UNITED STATES FISH AND WILDLIFE SERVICE... HAWAIIAN ISLANDS MARINE NATIONAL MONUMENT Pt. 404, App. C Appendix C to Part 404—Boundary Coordinated for...

  19. 50 CFR Appendix C to Part 404 - Boundary Coordinated for Papaha

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 9 2011-10-01 2011-10-01 false Boundary Coordinated for Papaha C Appendix C to Part 404 Wildlife and Fisheries JOINT REGULATIONS (UNITED STATES FISH AND WILDLIFE SERVICE... HAWAIIAN ISLANDS MARINE NATIONAL MONUMENT Pt. 404, App. C Appendix C to Part 404—Boundary Coordinated for...

  20. 50 CFR Appendix D to Part 404 - Boundary Coordinates for Papaha

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 7 2010-10-01 2010-10-01 false Boundary Coordinates for Papaha D Appendix D to Part 404 Wildlife and Fisheries JOINT REGULATIONS (UNITED STATES FISH AND WILDLIFE SERVICE... HAWAIIAN ISLANDS MARINE NATIONAL MONUMENT Pt. 404, App. D Appendix D to Part 404—Boundary Coordinates for...

  1. Insights into the Cell Shape Dynamics of Migrating Dictyostelium discoideum

    NASA Astrophysics Data System (ADS)

    Driscoll, Meghan; Homan, Tess; McCann, Colin; Parent, Carole; Fourkas, John; Losert, Wolfgang

    2010-03-01

    Dynamic cell shape is a highly visible manifestation of the interaction between the internal biochemical state of a cell and its external environment. We analyzed the dynamic cell shape of migrating cells using the model system Dictyostelium discoideum. Applying a snake algorithm to experimental movies, we extracted cell boundaries in each frame and followed local boundary motion over long time intervals. Using a local motion measure that corresponds to protrusive/retractive activity, we found that protrusions are intermittent and zig-zag, whereas retractions are more sustained and straight. Correlations of this local motion measure reveal that protrusions appear more localized than retractions. Using a local shape measure, curvature, we also found that small peaks in boundary curvature tend to originate at the front of cells and propagate backwards. We will review the possible cytoskeletal origin of these mechanical waves.

  2. The memory of the accreting plate boundary and the continuity of fracture zones

    USGS Publications Warehouse

    Schouten, Hans; Klitgord, Kim D.

    1982-01-01

    A detailed aeromagnetic anomaly map of the Mesozoic seafloor-spreading lineations southwest of Bermuda reveals the dominant magnetic grain of the oceanic crust and the character of the accreting boundary at the time of crustal formation. The magnetic anomaly pattern is that of a series of elongate lobes perpendicular to the fracture zone (flowline) trends. The linear sets of magnetic anomaly peaks and troughs have narrow regions of reduced amplitude anomalies associated with the fracture zones. During the period of Mesozoic geomagnetic polarity reversals (when 1200 km of central North Atlantic seafloor formed), the Atlantic accreting boundary consisted of stationary, elongate, spreading center cells that maintained their independence even though sometimes only minor spatial offsets existed between cells. Normal oceanic crustal structure was formed in the spreading center cells, but structural anomalies and discontinuities characteristic of fracture zones were formed at their boundaries, which parallel flowlines of Mesozoic relative plate motion in the central North Atlantic. We suggest that the memory for a stationary pattern of independent spreading center cells resides in the young brittle lithosphere at the accreting boundary where the lithosphere is weakest; here, each spreading center cell independently goes through its cylce of stress buildup, stress release, and crustal accretion, after which its memory is refreshed. The temporal offset between the peaks of the accretionary activity that takes place within each cell may provide the mechanism for maintaining the independence of adjacent spreading center cells through times when no spatial offset between the cells exists.

  3. Dynamic expression of a Hydra FGF at boundaries and termini.

    PubMed

    Lange, Ellen; Bertrand, Stephanie; Holz, Oliver; Rebscher, Nicole; Hassel, Monika

    2014-12-01

    Guidance of cells and tissue sheets is an essential function in developing and differentiating animal tissues. In Hydra, where cells and tissue move dynamically due to constant cell proliferation towards the termini or into lateral, vegetative buds, factors essential for guidance are still unknown. Good candidates to take over this function are fibroblast growth factors (FGFs). We present the phylogeny of several Hydra FGFs and analysis of their expression patterns. One of the FGFs is expressed in all terminal regions targeted by tissue movement and at boundaries crossed by moving tissue and cells with an expression pattern slightly differing in two Hydra strains. A model addressing an involvement of this FGF in cell movement and morphogenesis is proposed: Hydra FGFf-expressing cells might serve as sources to attract tissue and cells towards the termini of the body column and across morphological boundaries. Moreover, a function in morphogenesis and/or differentiation of cells and tissue is suggested.

  4. Quantum dot properties in the multiband envelope-function approximation using boundary conditions based upon first-principles quantum calculations

    NASA Astrophysics Data System (ADS)

    Flory, Curt A.; Musgrave, Charles B.; Zhang, Zhiyong

    2008-05-01

    A number of physical processes involving quantum dots depend critically upon the “evanescent” electron eigenstate wave function that extends outside of the material surface into the surrounding region. These processes include electron tunneling through quantum dots, as well as interactions between multiple quantum dot structures. In order to unambiguously determine these evanescent fields, appropriate boundary conditions have been developed to connect the electronic solutions interior to the semiconductor quantum dot to exterior vacuum solutions. In standard envelope function theory, the interior wave function consists of products of band edge and envelope functions, and both must be considered when matching to the external solution. While the envelope functions satisfy tractable equations, the band edge functions are generally not known. In this work, symmetry arguments in the spherically symmetric approximation are used in conjunction with the known qualitative behavior of bonding and antibonding orbitals to catalog the behavior of the band edge functions at the unit cell boundary. This physical approximation allows consolidation of the influence of the band edge functions to two simple surface parameters that are incorporated into the boundary conditions and are straightforwardly computed by using numerical first-principles quantum techniques. These new boundary conditions are employed to analyze an isolated spherically symmetric semiconductor quantum dot in vacuum within the analytical model of Sercel and Vahala [Phys. Rev. Lett. 65, 239 (1990); Phys. Rev. B 42, 3690 (1990)]. Results are obtained for quantum dots made of GaAs and InP, which are compared with ab initio calculations that have appeared in the literature.

  5. Accurate cell counts in live mouse embryos using optical quadrature and differential interference contrast microscopy

    NASA Astrophysics Data System (ADS)

    Warger, William C., II; Newmark, Judith A.; Zhao, Bing; Warner, Carol M.; DiMarzio, Charles A.

    2006-02-01

    Present imaging techniques used in in vitro fertilization (IVF) clinics are unable to produce accurate cell counts in developing embryos past the eight-cell stage. We have developed a method that has produced accurate cell counts in live mouse embryos ranging from 13-25 cells by combining Differential Interference Contrast (DIC) and Optical Quadrature Microscopy. Optical Quadrature Microscopy is an interferometric imaging modality that measures the amplitude and phase of the signal beam that travels through the embryo. The phase is transformed into an image of optical path length difference, which is used to determine the maximum optical path length deviation of a single cell. DIC microscopy gives distinct cell boundaries for cells within the focal plane when other cells do not lie in the path to the objective. Fitting an ellipse to the boundary of a single cell in the DIC image and combining it with the maximum optical path length deviation of a single cell creates an ellipsoidal model cell of optical path length deviation. Subtracting the model cell from the Optical Quadrature image will either show the optical path length deviation of the culture medium or reveal another cell underneath. Once all the boundaries are used in the DIC image, the subtracted Optical Quadrature image is analyzed to determine the cell boundaries of the remaining cells. The final cell count is produced when no more cells can be subtracted. We have produced exact cell counts on 5 samples, which have been validated by Epi-Fluorescence images of Hoechst stained nuclei.

  6. Design principles for high efficiency small-grain polysilicon solar cells, with supporting experimental studies

    NASA Technical Reports Server (NTRS)

    Lindholm, F. A.; Neugroschel, A.; Sah, C. T.

    1982-01-01

    Design principles suggested here aim toward high conversion efficiency (greater than 15 percent) in polysilicon cells. The principles seek to decrease the liabilities of both intragranular and grain-boundary-surface defects. The advantages of a phosphorus atom concentration gradient in a thin (less than 50 microns) base of a p(+)/n(x)/n(+) drift-field solar cell, which produces favorable gradients in chemical potential, minority-carrier mobility and diffusivity, and recombination lifetime (via phosphorus gettering) are suggested. The degrading effects of grain boundaries are reduced by these three gradients and by substituting atoms (P, H, F or Li) for vacancies on the grain-boundary surface. From recent experiments comes support for the benefits of P diffusion down grain boundaries and, for quasi-grain-boundary-free and related structures. New analytic solutions for the n(x)-base include the effect of a power-law dependence between P concentration and lifetime. These provide an upper-bound estimate on the open circuit voltage. Finite-difference numerical solutions of the six Shockley equations furnish complete information about all solar-cell parameters and add insight concerning design.

  7. Communication and Culture in the Surgical Intensive Care Unit: Boundary Production and the Improvement of Patient Care.

    PubMed

    Conn, Lesley Gotlib; Haas, Barbara; Cuthbertson, Brian H; Amaral, Andre C; Coburn, Natalie; Nathens, Avery B

    2016-06-01

    This ethnography explores communication around critically ill surgical patients in three surgical intensive care units (ICUs) in Canada. A boundary framework is used to articulate how surgeons', intensivists', and nurses' communication practices shape and are shaped by their respective disciplinary perspectives and experiences. Through 50 hours of observations and 43 interviews, these health care providers are found to engage in seven communication behaviors that either mitigate or magnify three contested symbolic boundaries: expertise, patient ownership, and decisional authority. Where these boundaries are successfully mitigated, experiences of collaborative, high-quality patient care are produced; by contrast, boundary magnification produces conflict and perceptions of unsafe patient care. Findings reveal that high quality and safe patient care are produced through complex social and cultural interactions among surgeons, intensivists, and nurses that are also expressions of knowledge and power. This enhances our understanding of why current quality improvement efforts targeting communication may be ineffective. © The Author(s) 2015.

  8. Adaptive Meshing of Ship Air-Wake Flowfields

    DTIC Science & Technology

    2014-10-21

    performs cut- cell operations at geometry boundaries. A second-order spatial finite-volume scheme has been incorporated with explicit first order...The cells intersected by the geometry are handled using the “cut- cell ” approach, which is basically creating arbitrary polyhedral elements with...appropriate surface boundary conditions. Any cells completely outside the computational domain are tagged external and not solved in the flow solution

  9. Simulation of ground-water flow in coastal Georgia and adjacent parts of South Carolina and Florida-predevelopment, 1980, and 2000

    USGS Publications Warehouse

    Payne, Dorothy F.; Rumman, Malek Abu; Clarke, John S.

    2005-01-01

    A digital model was developed to simulate steady-state ground-water flow in a 42,155-square-mile area of coastal Georgia and adjacent parts of South Carolina and Florida. The model was developed to (1) understand and refine the conceptual model of regional ground-water flow, (2) serve as a framework for the development of digital subregional ground-water flow and solute-transport models, and (3) serve as a tool for future evaluations of hypothetical pumping scenarios used to facilitate water management in the coastal area. Single-density ground-water flow was simulated using the U.S. Geological Survey finite-difference code MODFLOW-2000 for mean-annual conditions during predevelopment (pre?1900) and the years 1980 and 2000. The model comprises seven layers: the surficial aquifer system, the Brunswick aquifer system, the Upper Floridan aquifer, the Lower Floridan aquifer, and the intervening confining units. A combination of boundary conditions was applied, including a general-head boundary condition on the top active cells of the model and a time-variable fixed-head boundary condition along part of the southern lateral boundary. Simulated heads for 1980 and 2000 conditions indicate a good match to observed values, based on a plus-or-minus 10-foot (ft) calibration target and calibration statistics. The root-mean square of residual water levels for the Upper Floridan aquifer was 13.0 ft for the 1980 calibration and 9.94 ft for the 2000 calibration. Some spatial patterns of residuals were indicated for the 1980 and 2000 simulations, and are likely a result of model-grid cell size and insufficiently detailed hydraulic-property and pumpage data in some areas. Simulated potentiometric surfaces for predevelopment, 1980, and 2000 conditions all show major flow system features that are indicated by estimated peotentiometric maps. During 1980?2000, simulated water levels at the centers of pumping at Savannah and Brunswick rose more than 20 ft and 8 ft, respectively, in response to decreased pumping. Simulated drawdown exceeded 10 ft in the Upper Floridan aquifer across much of the western half of the model area, with drawdown exceeding 20 ft along parts of the western, northern, and southern boundaries where irrigation pumping increased during this period. From predevelopment to 2000 conditions, the simulated water budget showed an increase in inflow from, and decrease in outflow to, the general-head boundaries, and a reversal from net seaward flow to net landward flow across the coastline. Simulated changes in recharge and discharge distribution from predevelopment to 2000 conditions showed an increase in extent and magnitude of net recharge cells in the northern part of the model area, and a decrease in discharge or change to recharge in cells containing major streams and beneath major pumping centers. The model is relatively sensitive to pumping and the controlling head at the fixed-head boundary and less sensitive to the distribution of aquifer properties in general. Model limitations include: (1) its spatial scale and discretization, (2) the extent to which data are available to physically define the flow system, (3) the type of boundary conditions and controlling parameters used, (4) uncertainty in the distribution of pumping, and (5) uncertainty in field-scale hydraulic properties. The model could be improved with more accurate estimates of ground-water pumpage and better characterization of recharge and discharge.

  10. Probing the biology of cell boundary conditions through confinement of Xenopus cell-free cytoplasmic extracts.

    PubMed

    Bermudez, Jessica G; Chen, Hui; Einstein, Lily C; Good, Matthew C

    2017-01-01

    Cell-free cytoplasmic extracts prepared from Xenopus eggs and embryos have for decades provided a biochemical system with which to interrogate complex cell biological processes in vitro. Recently, the application of microfabrication and microfluidic strategies in biology has narrowed the gap between in vitro and in vivo studies by enabling formation of cell-size compartments containing functional cytoplasm. These approaches provide numerous advantages over traditional biochemical experiments performed in a test tube. Most notably, the cell-free cytoplasm is confined using a two- or three-dimensional boundary, which mimics the natural configuration of a cell. This strategy enables characterization of the spatial organization of a cell, and the role that boundaries play in regulating intracellular assembly and function. In this review, we describe the marriage of Xenopus cell-free cytoplasm and confinement technologies to generate synthetic cell-like systems, the recent biological insights they have enabled, and the promise they hold for future scientific discovery. © 2017 Wiley Periodicals, Inc.

  11. The Making of a Citizen.

    ERIC Educational Resources Information Center

    Pickle, Catherine; And Others

    1987-01-01

    Two study units are offered: (1) a primary and intermediate unit entitled "What Are the Boundaries of Freedom of Speech"; and (2) an intermediate unit entitled "What Are the Challenges of Freedom of Religion?" (MT)

  12. Uniform gradient estimates on manifolds with a boundary and applications

    NASA Astrophysics Data System (ADS)

    Cheng, Li-Juan; Thalmaier, Anton; Thompson, James

    2018-04-01

    We revisit the problem of obtaining uniform gradient estimates for Dirichlet and Neumann heat semigroups on Riemannian manifolds with boundary. As applications, we obtain isoperimetric inequalities, using Ledoux's argument, and uniform quantitative gradient estimates, firstly for C^2_b functions with boundary conditions and then for the unit spectral projection operators of Dirichlet and Neumann Laplacians.

  13. Combining tower mixing ratio and community model data to estimate regional-scale net ecosystem carbon exchange by boundary layer inversion over four flux towers in the United States

    Treesearch

    Xueri Dang; Chun-Ta Lai; David Y. Hollinger; Andrew J. Schauer; Jingfeng Xiao; J. William Munger; Clenton Owensby; James R. Ehleringer

    2011-01-01

    We evaluated an idealized boundary layer (BL) model with simple parameterizations using vertical transport information from community model outputs (NCAR/NCEP Reanalysis and ECMWF Interim Analysis) to estimate regional-scale net CO2 fluxes from 2002 to 2007 at three forest and one grassland flux sites in the United States. The BL modeling...

  14. A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity.

    PubMed

    Cerchiari, Alec E; Garbe, James C; Jee, Noel Y; Todhunter, Michael E; Broaders, Kyle E; Peehl, Donna M; Desai, Tejal A; LaBarge, Mark A; Thomson, Matthew; Gartner, Zev J

    2015-02-17

    Developing tissues contain motile populations of cells that can self-organize into spatially ordered tissues based on differences in their interfacial surface energies. However, it is unclear how self-organization by this mechanism remains robust when interfacial energies become heterogeneous in either time or space. The ducts and acini of the human mammary gland are prototypical heterogeneous and dynamic tissues comprising two concentrically arranged cell types. To investigate the consequences of cellular heterogeneity and plasticity on cell positioning in the mammary gland, we reconstituted its self-organization from aggregates of primary cells in vitro. We find that self-organization is dominated by the interfacial energy of the tissue-ECM boundary, rather than by differential homo- and heterotypic energies of cell-cell interaction. Surprisingly, interactions with the tissue-ECM boundary are binary, in that only one cell type interacts appreciably with the boundary. Using mathematical modeling and cell-type-specific knockdown of key regulators of cell-cell cohesion, we show that this strategy of self-organization is robust to severe perturbations affecting cell-cell contact formation. We also find that this mechanism of self-organization is conserved in the human prostate. Therefore, a binary interfacial interaction with the tissue boundary provides a flexible and generalizable strategy for forming and maintaining the structure of two-component tissues that exhibit abundant heterogeneity and plasticity. Our model also predicts that mutations affecting binary cell-ECM interactions are catastrophic and could contribute to loss of tissue architecture in diseases such as breast cancer.

  15. Developments in Acoustic Metamaterials for Acoustic Ground Cloaks

    NASA Astrophysics Data System (ADS)

    Kerrian, Peter Adam

    The objective of acoustic cloaking is to eliminate both the back scattered and forward scattered acoustic fields by redirecting the incident wave around an object. Acoustic ground cloaks, which conceal an object on a rigid reflecting surface, utilize a linear coordinate transformation to map the flat surface to a void by compressing space into two cloaking regions consisting of a homogeneous anisotropic acoustic metafluid. Transformation acoustics allows for the realization of a coordinate transformation through a reinterpretation of the scale factors as a new material in the original coordinate system. Previous work has demonstrated at least three types of unit cells exhibit homogeneous anisotropic mass density and homogeneous isotropic bulk modulus: alternating layers of homogeneous isotropic fluids, perforated plates and solid inclusions. The primary focus of this dissertation is to demonstrate underwater anisotropic mass density with a solid inclusion unit cell and realize an underwater perforated plate acoustic ground cloak. An in depth analysis into the methods used to characterize the effective material parameters of solid inclusion unit cells with water as the background fluid was performed for both single inclusion unit cells as well as multi-inclusion unit cells. The degree of density anisotropy obtainable for a rigid single inclusion unit cell is limited by the size of the inclusion. However, a greater degree of anisotropy can be achieved by introducing additional inclusions into the unit cell design. For example, including a foam material that is less dense than the background fluid, results in an anisotropic density tensor with one component greater than and one component less than the value of the background fluid. The results of a parametric study determined that for a multi-inclusion unit cell, the effective material parameters can be controlled by the dimensions of the rigid inclusion as well as the material parameters and dimensions of the foam inclusions. Non-destructive acoustic excitation techniques were used to extract the material parameters of different grades of foam to identify the ideal grade for use in a multi-inclusion unit cell. Single inclusion and multi-inclusion bulk metamaterial samples were constructed and tested to characterize the effective material properties to determine if they exhibited the desired homogeneous anisotropic behavior. The single steel inclusion metamaterial behaved as expected, demonstrating anisotropic mass density and isotropic bulk modulus. Almost no sound energy was transmitted through the multi-inclusion metamaterial, contrary to expectation, because of the presence of air bubbles, both on the surface of the foam as well as potentially in between the inclusions. Finally, an underwater acoustic ground cloak was constructed from perforated steel plates and experimentally tested to conceal an object on a pressure release surface. The perforated plate acoustic ground cloak successfully cloaked the scattered object over a broad frequency range of 7 [kHz] to 12 [kHz]. There was excellent agreement between the phase of the surface reflection and the cloak reflection with a small amplitude difference attributed to the difference between a water - air and a water - mylar - air boundary. Above 15 [kHz], the cloaking performance decreased as the effective material parameters of the perforated plate metamaterial deviated from the required material parameters.

  16. Symmetry and scale orient Min protein patterns in shaped bacterial sculptures

    NASA Astrophysics Data System (ADS)

    Wu, Fabai; van Schie, Bas G. C.; Keymer, Juan E.; Dekker, Cees

    2015-08-01

    The boundary of a cell defines the shape and scale of its subcellular organization. However, the effects of the cell's spatial boundaries as well as the geometry sensing and scale adaptation of intracellular molecular networks remain largely unexplored. Here, we show that living bacterial cells can be ‘sculpted’ into defined shapes, such as squares and rectangles, which are used to explore the spatial adaptation of Min proteins that oscillate pole-to-pole in rod-shaped Escherichia coli to assist cell division. In a wide geometric parameter space, ranging from 2 × 1 × 1 to 11 × 6 × 1 μm3, Min proteins exhibit versatile oscillation patterns, sustaining rotational, longitudinal, diagonal, stripe and even transversal modes. These patterns are found to directly capture the symmetry and scale of the cell boundary, and the Min concentration gradients scale with the cell size within a characteristic length range of 3-6 μm. Numerical simulations reveal that local microscopic Turing kinetics of Min proteins can yield global symmetry selection, gradient scaling and an adaptive range, when and only when facilitated by the three-dimensional confinement of the cell boundary. These findings cannot be explained by previous geometry-sensing models based on the longest distance, membrane area or curvature, and reveal that spatial boundaries can facilitate simple molecular interactions to result in far more versatile functions than previously understood.

  17. Immersed Boundary Models for Quantifying Flow-Induced Mechanical Stimuli on Stem Cells Seeded on 3D Scaffolds in Perfusion Bioreactors.

    PubMed

    Guyot, Yann; Smeets, Bart; Odenthal, Tim; Subramani, Ramesh; Luyten, Frank P; Ramon, Herman; Papantoniou, Ioannis; Geris, Liesbet

    2016-09-01

    Perfusion bioreactors regulate flow conditions in order to provide cells with oxygen, nutrients and flow-associated mechanical stimuli. Locally, these flow conditions can vary depending on the scaffold geometry, cellular confluency and amount of extra cellular matrix deposition. In this study, a novel application of the immersed boundary method was introduced in order to represent a detailed deformable cell attached to a 3D scaffold inside a perfusion bioreactor and exposed to microscopic flow. The immersed boundary model permits the prediction of mechanical effects of the local flow conditions on the cell. Incorporating stiffness values measured with atomic force microscopy and micro-flow boundary conditions obtained from computational fluid dynamics simulations on the entire scaffold, we compared cell deformation, cortical tension, normal and shear pressure between different cell shapes and locations. We observed a large effect of the precise cell location on the local shear stress and we predicted flow-induced cortical tensions in the order of 5 pN/μm, at the lower end of the range reported in literature. The proposed method provides an interesting tool to study perfusion bioreactors processes down to the level of the individual cell's micro-environment, which can further aid in the achievement of robust bioprocess control for regenerative medicine applications.

  18. Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus

    PubMed Central

    Smith, Emily M.; Lajoie, Bryan R.; Jain, Gaurav; Dekker, Job

    2016-01-01

    Three-dimensional genome structure plays an important role in gene regulation. Globally, chromosomes are organized into active and inactive compartments while, at the gene level, looping interactions connect promoters to regulatory elements. Topologically associating domains (TADs), typically several hundred kilobases in size, form an intermediate level of organization. Major questions include how TADs are formed and how they are related to looping interactions between genes and regulatory elements. Here we performed a focused 5C analysis of a 2.8 Mb chromosome 7 region surrounding CFTR in a panel of cell types. We find that the same TAD boundaries are present in all cell types, indicating that TADs represent a universal chromosome architecture. Furthermore, we find that these TAD boundaries are present irrespective of the expression and looping of genes located between them. In contrast, looping interactions between promoters and regulatory elements are cell-type specific and occur mostly within TADs. This is exemplified by the CFTR promoter that in different cell types interacts with distinct sets of distal cell-type-specific regulatory elements that are all located within the same TAD. Finally, we find that long-range associations between loci located in different TADs are also detected, but these display much lower interaction frequencies than looping interactions within TADs. Interestingly, interactions between TADs are also highly cell-type-specific and often involve loci clustered around TAD boundaries. These data point to key roles of invariant TAD boundaries in constraining as well as mediating cell-type-specific long-range interactions and gene regulation. PMID:26748519

  19. Atomic resolution characterization of a SrTiO{sub 3} grain boundary in the STEM

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    McGibbon, M.M.; Browning, N.D.; Chisholm, M.F.

    This paper uses the complementary techniques of high resolution Z-contrast imaging and PEELS (parallel detection electron energy loss spectroscopy) to investigate the atomic structure and chemistry of a 25 degree symmetric tilt boundary in a bicrystal of the electroceramic SrTiO{sub 3}. The gain boundary is composed of two different boundary structural units which occur in about equal numbers: one which contains Ti-O columns and the other without.

  20. Fast and accurate automated cell boundary determination for fluorescence microscopy

    NASA Astrophysics Data System (ADS)

    Arce, Stephen Hugo; Wu, Pei-Hsun; Tseng, Yiider

    2013-07-01

    Detailed measurement of cell phenotype information from digital fluorescence images has the potential to greatly advance biomedicine in various disciplines such as patient diagnostics or drug screening. Yet, the complexity of cell conformations presents a major barrier preventing effective determination of cell boundaries, and introduces measurement error that propagates throughout subsequent assessment of cellular parameters and statistical analysis. State-of-the-art image segmentation techniques that require user-interaction, prolonged computation time and specialized training cannot adequately provide the support for high content platforms, which often sacrifice resolution to foster the speedy collection of massive amounts of cellular data. This work introduces a strategy that allows us to rapidly obtain accurate cell boundaries from digital fluorescent images in an automated format. Hence, this new method has broad applicability to promote biotechnology.

  1. Studying the incommensurability that unites us: persuasion across discourse communities, persuasion via boundary objects

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Wilson, G. D.

    2003-01-01

    In the science studies literature the theoretical construct of boundary objects has been developed to explain how diverse communities clustered around a scientific subject area cooperate to advance that area. Boundary objects are 'scientific objects that inhabit several intersecting social worlds . . . and satisfy the informational requirements of each of them' (Star and Griesemer 393). Star and Griesemer's foundational article showed that these objects can be shared by communities ranging from academic researchers to amateur enthiasts, adminsitrators, philanthropists, and technicians. While each community understands the object differently, there is enough commonality in the understanding of the object tomore » unite these distinct social worlds and facilitate cooperation among them.« less

  2. Yucca Mountain Site Charecteization Project Summary of Socioeconomic Data Analysis Conducted in Support of the Radiological Monitoring Program, During FY 2001

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    L.K. Roe

    2001-12-11

    This report is a summary of socioeconomic data analyses conducted in support of the Radiological Monitoring Program during fiscal year 2001. Socioeconomic data contained in this report include estimates for the years 2000 and 2001 of the resident population in the vicinity of Yucca Mountain. The estimates presented in this report are based on selected Census 2000 statistics, and housing and population data that were acquired and developed in accordance with LP-RS-00 1 Q-M&0, Scientific Investigation of Economic, Demographic, and Agricultural Characteristics in the Vicinity of Yucca Mountain. The study area from which data were collected is delineated by amore » radial grid, consisting of 160 grid cells, that is suitable for evaluating the pathways and potential impacts of a release of radioactive materials to the environment within a distance of 84 kilometers from Yucca Mountain. Data are presented in a tabular format by the county, state, area, and grid cell in which housing units, households, and resident population are located. Also included is a visual representation of the distribution of the 2000 residential populations within the study area, showing Census 2000 geography, county boundaries, and taxing district boundaries for selected communities.« less

  3. The demarcation of arbitrary boundaries for coastal zone management: the Israeli case.

    PubMed

    Sas, Eliraz; Fischhendler, Itay; Portman, Michelle E

    2010-11-01

    Integrated coastal zone management (ICZM) addresses the interconnections, complexities, and conflicts between many users of the coastal area with different goals. It requires setting managerial boundaries that capture many elements of human and natural systems. Experience teaches us that without a directed effort managerial rules and laws are not likely to coincide with the physical sensitivity of units that reflect different environmental characteristics of the coastal zone. Hence the aim of this study is to explore why coastal managerial boundaries are set arbitrarily and whether and how it is possible to address the problems this poses. We examine what influences the decisions of a new coastal management authority in Israel to determine how this body overcomes the limits of arbitrary boundary demarcation. The study found that real life management succeeded to both address areas outside the arbitrary boundaries and also to respect some of the different socio-economic needs and physical constraints of the coastal sub-units. Israel's Coastal Environment Protection Law allows and, in fact, encourages the regulator to use discretion and to employ various criteria to balance development and conservation. This implies that policy makers are cognizant of a need to balance ecologically-sensitive boundaries that consider the homogeneity of the coast with politically feasible boundaries that are set arbitrarily. Copyright 2010 Elsevier Ltd. All rights reserved.

  4. EphA2/Ephrin-A1 Mediate Corneal Epithelial Cell Compartmentalization via ADAM10 Regulation of EGFR Signaling.

    PubMed

    Kaplan, Nihal; Ventrella, Rosa; Peng, Han; Pal-Ghosh, Sonali; Arvanitis, Constadina; Rappoport, Joshua Z; Mitchell, Brian J; Stepp, Mary Ann; Lavker, Robert M; Getsios, Spiro

    2018-01-01

    Progenitor cells of the limbal epithelium reside in a discrete area peripheral to the more differentiated corneal epithelium and maintain tissue homeostasis. What regulates the limbal-corneal epithelial boundary is a major unanswered question. Ephrin-A1 ligand is enriched in the limbal epithelium, whereas EphA2 receptor is concentrated in the corneal epithelium. This reciprocal pattern led us to assess the role of ephrin-A1 and EphA2 in limbal-corneal epithelial boundary organization. EphA2-expressing corneal epithelial cells engineered to express ephrin-A1 were used to study boundary formation in vitro in a manner that mimicked the relative abundance of these juxtamembrane signaling proteins in the limbal and corneal epithelium in vivo. Interaction of these two distinct cell populations following initial seeding into discrete culture compartments was assessed by live cell imaging. Immunofluoresence and immunoblotting was used to evaluate the contribution of downstream growth factor signaling and cell-cell adhesion systems to boundary formation at sites of heterotypic contact between ephrin-A1 and EphA2 expressing cells. Ephrin-A1-expressing cells impeded and reversed the migration of EphA2-expressing corneal epithelial cells upon heterotypic contact formation leading to coordinated migration of the two cell populations in the direction of an ephrin-A1-expressing leading front. Genetic silencing and pharmacologic inhibitor studies demonstrated that the ability of ephrin-A1 to direct migration of EphA2-expressing cells depended on an a disintegrin and metalloproteinase domain-containing protein 10 (ADAM10) and epidermal growth factor receptor (EGFR) signaling pathway that limited E-cadherin-mediated adhesion at heterotypic boundaries. Ephrin-A1/EphA2 signaling complexes play a key role in limbal-corneal epithelial compartmentalization and the response of these tissues to injury.

  5. Analysis of gene expression levels in individual bacterial cells without image segmentation.

    PubMed

    Kwak, In Hae; Son, Minjun; Hagen, Stephen J

    2012-05-11

    Studies of stochasticity in gene expression typically make use of fluorescent protein reporters, which permit the measurement of expression levels within individual cells by fluorescence microscopy. Analysis of such microscopy images is almost invariably based on a segmentation algorithm, where the image of a cell or cluster is analyzed mathematically to delineate individual cell boundaries. However segmentation can be ineffective for studying bacterial cells or clusters, especially at lower magnification, where outlines of individual cells are poorly resolved. Here we demonstrate an alternative method for analyzing such images without segmentation. The method employs a comparison between the pixel brightness in phase contrast vs fluorescence microscopy images. By fitting the correlation between phase contrast and fluorescence intensity to a physical model, we obtain well-defined estimates for the different levels of gene expression that are present in the cell or cluster. The method reveals the boundaries of the individual cells, even if the source images lack the resolution to show these boundaries clearly. Copyright © 2012 Elsevier Inc. All rights reserved.

  6. The Effect of Interface Cracks on the Electrical Performance of Solar Cells

    NASA Astrophysics Data System (ADS)

    Kim, Hansung; Tofail, Md. Towfiq; John, Ciby

    2018-04-01

    Among a variety of solar cell types, thin-film solar cells have been rigorously investigated as cost-effective and efficient solar cells. In many cases, flexible solar cells are also fabricated as thin films and undergo frequent stress due to the rolling and bending modes of applications. These frequent motions result in crack initiation and propagation (including delamination) in the thin-film solar cells, which cause degradation in efficiency. Reliability evaluation of solar cells is essential for developing a new type of solar cell. In this paper, we investigated the effect of layer delamination and grain boundary crack on 3D thin-film solar cells. We used finite element method simulation for modeling of both electrical performance and cracked structure of 3D solar cells. Through simulations, we quantitatively calculated the effect of delamination length on 3D copper indium gallium diselenide (CIGS) solar cell performance. Moreover, it was confirmed that the grain boundary of CIGS could improve the solar cell performance and that grain boundary cracks could decrease cell performance by altering the open circuit voltage. In this paper, the investigated material is a CIGS solar cell, but our method can be applied to general polycrystalline solar cells.

  7. Flow regimes in a trapped vortex cell

    NASA Astrophysics Data System (ADS)

    Lasagna, D.; Iuso, G.

    2016-03-01

    This paper presents results of an experimental investigation on the flow in a trapped vortex cell, embedded into a flat plate, and interacting with a zero-pressure-gradient boundary layer. The objective of the work is to describe the flow features and elucidate some of the governing physical mechanisms, in the light of recent investigations on flow separation control using vortex cells. Hot-wire velocity measurements of the shear layer bounding the cell and of the boundary layers upstream and downstream are reported, together with spectral and correlation analyses of wall-pressure fluctuation measurements. Smoke flow visualisations provide qualitative insight into some relevant features of the internal flow, namely a large-scale flow unsteadiness and possible mechanisms driving the rotation of the vortex core. Results are presented for two very different regimes: a low-Reynolds-number case where the incoming boundary layer is laminar and its momentum thickness is small compared to the cell opening, and a moderately high-Reynolds-number case, where the incoming boundary layer is turbulent and the ratio between the momentum thickness and the opening length is significantly larger than in the first case. Implications of the present findings to flow control applications of trapped vortex cells are also discussed.

  8. Single Grain Boundary Modeling and Design of Microcrystalline Si Solar Cells.

    PubMed

    Lin, Chu-Hsuan; Hsu, Wen-Tzu; Tai, Cheng-Hung

    2013-01-21

    For photovoltaic applications, microcrystalline silicon has a lot of advantages, such as the ability to absorb the near-infrared part of the solar spectrum. However, there are many dangling bonds at the grain boundary in microcrystalline Si. These dangling bonds would lead to the recombination of photo-generated carriers and decrease the conversion efficiency. Therefore, we included the grain boundary in the numerical study in order to simulate a microcrystalline Si solar cell accurately, designing new three-terminal microcrystalline Si solar cells. The 3-μm-thick three-terminal cell achieved a conversion efficiency of 10.8%, while the efficiency of a typical two-terminal cell is 9.7%. The three-terminal structure increased the J SC but decreased the V OC , and such phenomena are discussed. High-efficiency and low-cost Si-based thin film solar cells can now be designed based on the information provided in this paper.

  9. Single Grain Boundary Modeling and Design of Microcrystalline Si Solar Cells

    PubMed Central

    Lin, Chu-Hsuan; Hsu, Wen-Tzu; Tai, Cheng-Hung

    2013-01-01

    For photovoltaic applications, microcrystalline silicon has a lot of advantages, such as the ability to absorb the near-infrared part of the solar spectrum. However, there are many dangling bonds at the grain boundary in microcrystalline Si. These dangling bonds would lead to the recombination of photo-generated carriers and decrease the conversion efficiency. Therefore, we included the grain boundary in the numerical study in order to simulate a microcrystalline Si solar cell accurately, designing new three-terminal microcrystalline Si solar cells. The 3-μm-thick three-terminal cell achieved a conversion efficiency of 10.8%, while the efficiency of a typical two-terminal cell is 9.7%. The three-terminal structure increased the JSC but decreased the VOC, and such phenomena are discussed. High-efficiency and low-cost Si-based thin film solar cells can now be designed based on the information provided in this paper. PMID:28809309

  10. Geomorphological Mapping of Sputnik Planum on Pluto: Convection, Glacial Flow, Sublimation and Re-deposition of Nitrogen Ice

    NASA Astrophysics Data System (ADS)

    White, O. L.; Moore, J. M.; Stern, S. A.; Weaver, H. A., Jr.; Olkin, C.; Ennico Smith, K.; Young, L. A.; Cheng, A. F.

    2016-12-01

    The New Horizons flyby of Pluto provided extensive high-resolution coverage of its encounter hemisphere. The most prominent surface feature in this hemisphere is the high albedo region informally named Tombaugh Regio, the western portion of which is represented by the expansive nitrogen ice plains informally named Sputnik Planum. A large fraction of Sputnik Planum displays a distinct cellular pattern, with individual cells typically displaying ovoid planforms and shallow pitting on a scale of a few hundred meters. Troughs with medial ridges define the boundaries between cells. Prior studies have argued that this pattern is indicative of solid-state convection occurring within the nitrogen ice. The southern non-cellular plains are either featureless or display dense fields of often elongate and aligned pits typically reaching a few km across, interpreted to have formed via sublimation. The mapping that will be presented at AGU focuses on identifying the different plains units that compose Sputnik Planum and defining the boundaries between them, which aids in assessing their time sequencing and correlation to one another. The cellular plains are divided into bright and dark units, with the bright unit forming a continuous high albedo zone with the bright uplands of east Tombaugh Regio. We interpret the dark plains to represent the main body of convecting N2 ice that forms the cellular plains of Sputnik Planum, with the low albedo caused by a high concentration of entrained dark material (likely tholins). Preferential sublimation of N2 ice from these plains would leave the dark ice exposed, and re-deposition of the N2 ice on the eastern cellular plains and uplands of east Tombaugh Regio would create a thin veneer of pure, bright N2 ice covering these landscapes. The non-cellular plains are universally bright and display evidence for southwards flow of the N2 ice, based on the orientations of fields of elongate sublimation pits as well as the presence of `extinct cells' that appear to have migrated away from the zone of active convection. The larger pits that occur within the non-cellular plains imply that these plains are older than the cellular plains, where resurfacing via convection limits the maximum size attainable by sublimation pits.

  11. Postapocalypse stratigraphy: Some considerations and proposals

    NASA Astrophysics Data System (ADS)

    Prosh, E. C.; McCracken, A. D.

    1985-01-01

    An imminent nuclear apocalypse will be a geologically significant event characterized by widespread extinction and marked by a highly radioactive lower boundary layer. The concept of a fallout-enriched Cenozoic/postapocalypse boundary layer is significant in that such a horizon would constitute an ideal, global isochron that is both readily detectable and correlatable; the only other systemic boundary that appears to be analogous is the Cretaceous/Tertiary boundary. New terminology consistent with the established stratigraphic nomenclature is herein proposed for the major anticipated postapocalypse geochronologic units.

  12. Probing mixed tetragonal/rhombohedral-like monoclinic phases in strained bismuth ferrite films by optical second harmonic generation

    NASA Astrophysics Data System (ADS)

    Kumar, Amit; Denev, Sava; Zeches, Robert J.; Vlahos, Eftihia; Podraza, Nikolas J.; Melville, Alexander; Schlom, Darrell G.; Ramesh, R.; Gopalan, Venkatraman

    2010-09-01

    Epitaxial strain can induce the formation of morphotropic phase boundary in lead free ferroelectrics like bismuth ferrite, thereby enabling the coexistence of tetragonal and rhombohedral phases in the same film. The relative ratio of these phases is governed by the film thickness and theoretical studies suggest that there exists a monoclinic distortion of both the tetragonal as well as the rhombohedral unit cells due to imposed epitaxial strain. In this work we show that optical second harmonic generation can distinguish the tetragonal-like phase from the rhombohedral-like phase and enable detection of monoclinic distortion in only a pure tetragonal-like phase.

  13. Towards a Viscous Wall Model for Immersed Boundary Methods

    NASA Technical Reports Server (NTRS)

    Brehm, Christoph; Barad, Michael F.; Kiris, Cetin C.

    2016-01-01

    Immersed boundary methods are frequently employed for simulating flows at low Reynolds numbers or for applications where viscous boundary layer effects can be neglected. The primary shortcoming of Cartesian mesh immersed boundary methods is the inability of efficiently resolving thin turbulent boundary layers in high-Reynolds number flow application. The inefficiency of resolving the thin boundary is associated with the use of constant aspect ratio Cartesian grid cells. Conventional CFD approaches can efficiently resolve the large wall normal gradients by utilizing large aspect ratio cells near the wall. This paper presents different approaches for immersed boundary methods to account for the viscous boundary layer interaction with the flow-field away from the walls. Different wall modeling approaches proposed in previous research studies are addressed and compared to a new integral boundary layer based approach. In contrast to common wall-modeling approaches that usually only utilize local flow information, the integral boundary layer based approach keeps the streamwise history of the boundary layer. This allows the method to remain effective at much larger y+ values than local wall modeling approaches. After a theoretical discussion of the different approaches, the method is applied to increasingly more challenging flow fields including fully attached, separated, and shock-induced separated (laminar and turbulent) flows.

  14. Analysis of microtubule growth dynamics arising from altered actin network structure and contractility in breast tumor cells

    NASA Astrophysics Data System (ADS)

    Ory, Eleanor C.; Bhandary, Lekhana; E Boggs, Amanda; Chakrabarti, Kristi R.; Parker, Joshua; Losert, Wolfgang; Martin, Stuart S.

    2017-04-01

    The periphery of epithelial cells is shaped by opposing cytoskeletal physical forces generated predominately by two dynamic force generating systems—growing microtubule ends push against the boundary from the cell center, and the actin cortex contracts the attached plasma membrane. Here we investigate how changes to the structure and dynamics of the actin cortex alter the dynamics of microtubules. Current drugs target actin polymerization and contraction to reduce cell division and invasiveness; however, the impacts on microtubule dynamics remain incompletely understood. Using human MCF-7 breast tumor cells expressing GFP-tagged microtubule end-binding-protein-1 (EB1) and coexpression of cytoplasmic fluorescent protein mCherry, we map the trajectories of growing microtubule ends and cytoplasmic boundary respectively. Based on EB1 tracks and cytoplasmic boundary outlines, we calculate the speed, distance from cytoplasmic boundary, and straightness of microtubule growth. Actin depolymerization with Latrunculin-A reduces EB1 growth speed as well as allows the trajectories to extend beyond the cytoplasmic boundary. Blebbistatin, a direct myosin-II inhibitor, reduced EB1 speed and yielded less straight EB1 trajectories. Inhibiting signaling upstream of myosin-II contractility via the Rho-kinase inhibitor, Y-27632, altered EB1 dynamics differently from Blebbistatin. These results indicate that reduced actin cortex integrity can induce distinct alterations in microtubule dynamics. Given recent findings that tumor stem cell characteristics are increased by drugs which reduce actin contractility or stabilize microtubules, it remains important to clearly define how cytoskeletal drugs alter the interactions between these two filament systems in tumor cells.

  15. Shear Stress induced Stretching of Red Blood Cells by Oscillating Bubbles within a Narrow Gap

    NASA Astrophysics Data System (ADS)

    Li, Fenfang; Mohammadzadeh, Milad; Ohl, Claus-Dieter; Claus-Dieter Ohl Team

    2013-11-01

    The flow pattern, especially the boundary layer caused by the expanding/contracting bubble in a narrow gap (15 μm) and the resultant stretching of red blood cells is investigated in this work. High speed recordings show that a red blood cell (biconcave shape, thickness of 1-2 μm) can be elongated to five times its original length by a laser-induced cavitation bubble within the narrow gap. However, flexible cancer cells in suspension (RKO, spherical shape, diameter of 10-15 μm) are hardly elongated under the same experimental condition. We hypothesize that the shear stress at the boundary layer is crucial for this elongation to occur. Therefore, in order to resolve the related fluid dynamics, we conducted numerical simulations using the finite element method (Fluent). The rapidly expanding/contracting vapor bubble is successfully modeled by employing viscosity and surface tension. The transient pressure inside the bubble and the velocity profile of the flow is obtained. We observe strong shear near the upper and lower boundary during the bubble oscillation. The flow fields are compared with analytical solutions to transient and pulsating flows in 2D. In the experiment the red blood cells sit within the lower boundary layer, thus are probably elongated by this strong shear flow. In contrast, the spherical cancer cells are of comparable size to the gap height so that they are lesser affected by this boundary layer flow.

  16. EphA2/Ephrin-A1 Mediate Corneal Epithelial Cell Compartmentalization via ADAM10 Regulation of EGFR Signaling

    PubMed Central

    Kaplan, Nihal; Ventrella, Rosa; Peng, Han; Pal-Ghosh, Sonali; Arvanitis, Constadina; Rappoport, Joshua Z.; Mitchell, Brian J.; Stepp, Mary Ann; Lavker, Robert M.

    2018-01-01

    Purpose Progenitor cells of the limbal epithelium reside in a discrete area peripheral to the more differentiated corneal epithelium and maintain tissue homeostasis. What regulates the limbal–corneal epithelial boundary is a major unanswered question. Ephrin-A1 ligand is enriched in the limbal epithelium, whereas EphA2 receptor is concentrated in the corneal epithelium. This reciprocal pattern led us to assess the role of ephrin-A1 and EphA2 in limbal–corneal epithelial boundary organization. Methods EphA2-expressing corneal epithelial cells engineered to express ephrin-A1 were used to study boundary formation in vitro in a manner that mimicked the relative abundance of these juxtamembrane signaling proteins in the limbal and corneal epithelium in vivo. Interaction of these two distinct cell populations following initial seeding into discrete culture compartments was assessed by live cell imaging. Immunofluoresence and immunoblotting was used to evaluate the contribution of downstream growth factor signaling and cell–cell adhesion systems to boundary formation at sites of heterotypic contact between ephrin-A1 and EphA2 expressing cells. Results Ephrin-A1–expressing cells impeded and reversed the migration of EphA2-expressing corneal epithelial cells upon heterotypic contact formation leading to coordinated migration of the two cell populations in the direction of an ephrin-A1–expressing leading front. Genetic silencing and pharmacologic inhibitor studies demonstrated that the ability of ephrin-A1 to direct migration of EphA2-expressing cells depended on an a disintegrin and metalloproteinase domain-containing protein 10 (ADAM10) and epidermal growth factor receptor (EGFR) signaling pathway that limited E-cadherin–mediated adhesion at heterotypic boundaries. Conclusions Ephrin-A1/EphA2 signaling complexes play a key role in limbal–corneal epithelial compartmentalization and the response of these tissues to injury. PMID:29351356

  17. Development of a Watershed Boundary Dataset for Mississippi

    USGS Publications Warehouse

    Van Wilson, K.; Clair, Michael G.; Turnipseed, D. Phil; Rebich, Richard A.

    2009-01-01

    The U.S. Geological Survey, in cooperation with the Mississippi Department of Environmental Quality, U.S. Department of Agriculture-Natural Resources Conservation Service, Mississippi Department of Transportation, U.S. Department of Agriculture-Forest Service, and the Mississippi Automated Resource Information System, developed a 1:24,000-scale Watershed Boundary Dataset for Mississippi including watershed and subwatershed boundaries, codes, names, and drainage areas. The Watershed Boundary Dataset for Mississippi provides a standard geographical framework for water-resources and selected land-resources planning. The original 8-digit subbasins (hydrologic unit codes) were further subdivided into 10-digit watersheds and 12-digit subwatersheds - the exceptions are the Lower Mississippi River Alluvial Plain (known locally as the Delta) and the Mississippi River inside levees, which were only subdivided into 10-digit watersheds. Also, large water bodies in the Mississippi Sound along the coast were not delineated as small as a typical 12-digit subwatershed. All of the data - including watershed and subwatershed boundaries, hydrologic unit codes and names, and drainage-area data - are stored in a Geographic Information System database.

  18. Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus.

    PubMed

    Smith, Emily M; Lajoie, Bryan R; Jain, Gaurav; Dekker, Job

    2016-01-07

    Three-dimensional genome structure plays an important role in gene regulation. Globally, chromosomes are organized into active and inactive compartments while, at the gene level, looping interactions connect promoters to regulatory elements. Topologically associating domains (TADs), typically several hundred kilobases in size, form an intermediate level of organization. Major questions include how TADs are formed and how they are related to looping interactions between genes and regulatory elements. Here we performed a focused 5C analysis of a 2.8 Mb chromosome 7 region surrounding CFTR in a panel of cell types. We find that the same TAD boundaries are present in all cell types, indicating that TADs represent a universal chromosome architecture. Furthermore, we find that these TAD boundaries are present irrespective of the expression and looping of genes located between them. In contrast, looping interactions between promoters and regulatory elements are cell-type specific and occur mostly within TADs. This is exemplified by the CFTR promoter that in different cell types interacts with distinct sets of distal cell-type-specific regulatory elements that are all located within the same TAD. Finally, we find that long-range associations between loci located in different TADs are also detected, but these display much lower interaction frequencies than looping interactions within TADs. Interestingly, interactions between TADs are also highly cell-type-specific and often involve loci clustered around TAD boundaries. These data point to key roles of invariant TAD boundaries in constraining as well as mediating cell-type-specific long-range interactions and gene regulation. Copyright © 2016 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

  19. INDIVIDUAL TURBULENT CELL INTERACTION: BASIS FOR BOUNDARY LAYER ESTABLISHMENT

    EPA Science Inventory

    Boundary layers are important in determining the forces on objects in flowing fluids, mixing characteristics, and other phenomena. For example, benthic boundary layers are frequently active resuspension layers that determine bottom turbidity and transniissivity. Traditionally, bo...

  20. Improved Boundary Conditions for Cell-centered Difference Schemes

    NASA Technical Reports Server (NTRS)

    VanderWijngaart, Rob F.; Klopfer, Goetz H.; Chancellor, Marisa K. (Technical Monitor)

    1997-01-01

    Cell-centered finite-volume (CCFV) schemes have certain attractive properties for the solution of the equations governing compressible fluid flow. Among others, they provide a natural vehicle for specifying flux conditions at the boundaries of the physical domain. Unfortunately, they lead to slow convergence for numerical programs utilizing them. In this report a method for investigating and improving the convergence of CCFV schemes is presented, which focuses on the effect of the numerical boundary conditions. The key to the method is the computation of the spectral radius of the iteration matrix of the entire demoralized system of equations, not just of the interior point scheme or the boundary conditions.

  1. Kinetics of cellular dissolution in a Cu-Cd alloy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nakkalil, R.; Gupta, S.P.

    1989-07-01

    Dissolution of the cellular precipitate by cell boundary migration has been studied in a Cu-2 at.% Cd alloy in the temperature range 777--878 K. Microstructural observations have revealed that the process of dissolution begins at the original position of the grain boundary as well as the cell boundary. The steady state rate of cell boundary migration decreased with decreasing temperature of dissolution and became zero at approximately 770 K, which is about 30 K below the equilibrium solves temperature. The boundary diffusivities were determined at a number of temperatures by using the theory of Petermann and Hornbogen modified for dissolution.more » The diffusivity values calculated from the experimental data are seven orders of magnitude higher than the corresponding volume diffusivities. From the temperature dependence of the diffusivity, an activation energy of 157 kJ mol{sup {minus} 1} is obtained, which is bout three-quarters of the activation energy for the bulk diffusion of Cd into Cu. From the diffusivity and activation energy values, it is concluded that the diffusion of Cd along the migrating grain boundaries control the dissolution of the cellular precipitate in this alloy.« less

  2. Simulation of moving boundaries interacting with compressible reacting flows using a second-order adaptive Cartesian cut-cell method

    NASA Astrophysics Data System (ADS)

    Muralidharan, Balaji; Menon, Suresh

    2018-03-01

    A high-order adaptive Cartesian cut-cell method, developed in the past by the authors [1] for simulation of compressible viscous flow over static embedded boundaries, is now extended for reacting flow simulations over moving interfaces. The main difficulty related to simulation of moving boundary problems using immersed boundary techniques is the loss of conservation of mass, momentum and energy during the transition of numerical grid cells from solid to fluid and vice versa. Gas phase reactions near solid boundaries can produce huge source terms to the governing equations, which if not properly treated for moving boundaries, can result in inaccuracies in numerical predictions. The small cell clustering algorithm proposed in our previous work is now extended to handle moving boundaries enforcing strict conservation. In addition, the cell clustering algorithm also preserves the smoothness of solution near moving surfaces. A second order Runge-Kutta scheme where the boundaries are allowed to change during the sub-time steps is employed. This scheme improves the time accuracy of the calculations when the body motion is driven by hydrodynamic forces. Simple one dimensional reacting and non-reacting studies of moving piston are first performed in order to demonstrate the accuracy of the proposed method. Results are then reported for flow past moving cylinders at subsonic and supersonic velocities in a viscous compressible flow and are compared with theoretical and previously available experimental data. The ability of the scheme to handle deforming boundaries and interaction of hydrodynamic forces with rigid body motion is demonstrated using different test cases. Finally, the method is applied to investigate the detonation initiation and stabilization mechanisms on a cylinder and a sphere, when they are launched into a detonable mixture. The effect of the filling pressure on the detonation stabilization mechanisms over a hyper-velocity sphere launched into a hydrogen-oxygen-argon mixture is studied and a qualitative comparison of the results with the experimental data are made. Results indicate that the current method is able to correctly reproduce the different regimes of combustion observed in the experiments. Through the various examples it is demonstrated that our method is robust and accurate for simulation of compressible viscous reacting flow problems with moving/deforming boundaries.

  3. Tissue-tissue interaction-triggered calcium elevation is required for cell polarization during Xenopus gastrulation.

    PubMed

    Shindo, Asako; Hara, Yusuke; Yamamoto, Takamasa S; Ohkura, Masamichi; Nakai, Junichi; Ueno, Naoto

    2010-02-02

    The establishment of cell polarity is crucial for embryonic cells to acquire their proper morphologies and functions, because cell alignment and intracellular events are coordinated in tissues during embryogenesis according to the cell polarity. Although much is known about the molecules involved in cell polarization, the direct trigger of the process remains largely obscure. We previously demonstrated that the tissue boundary between the chordamesoderm and lateral mesoderm of Xenopus laevis is important for chordamesodermal cell polarity. Here, we examined the intracellular calcium dynamics during boundary formation between two different tissues. In a combination culture of nodal-induced chordamesodermal explants and a heterogeneous tissue, such as ectoderm or lateral mesoderm, the chordamesodermal cells near the boundary frequently displayed intracellular calcium elevation; this frequency was significantly less when homogeneous explants were used. Inhibition of the intracellular calcium elevation blocked cell polarization in the chordamesodermal explants. We also observed frequent calcium waves near the boundary of the dorsal marginal zone (DMZ) dissected from an early gastrula-stage embryo. Optical sectioning revealed that where heterogeneous explants touched, the chordamesodermal surface formed a wedge with the narrow end tucked under the heterogeneous explant. No such configuration was seen between homogeneous explants. When physical force was exerted against a chordamesodermal explant with a glass needle at an angle similar to that created in the explant, or migrating chordamesodermal cells crawled beneath a silicone block, intracellular calcium elevation was frequent and cell polarization was induced. Finally, we demonstrated that a purinergic receptor, which is implicated in mechano-sensing, is required for such frequent calcium elevation in chordamesoderm and for cell polarization. This study raises the possibility that tissue-tissue interaction generates mechanical forces through cell-cell contact that initiates coordinated cell polarization through a transient increase in intracellular calcium.

  4. Segmentation of Pollen Tube Growth Videos Using Dynamic Bi-Modal Fusion and Seam Carving.

    PubMed

    Tambo, Asongu L; Bhanu, Bir

    2016-05-01

    The growth of pollen tubes is of significant interest in plant cell biology, as it provides an understanding of internal cell dynamics that affect observable structural characteristics such as cell diameter, length, and growth rate. However, these parameters can only be measured in experimental videos if the complete shape of the cell is known. The challenge is to accurately obtain the cell boundary in noisy video images. Usually, these measurements are performed by a scientist who manually draws regions-of-interest on the images displayed on a computer screen. In this paper, a new automated technique is presented for boundary detection by fusing fluorescence and brightfield images, and a new efficient method of obtaining the final cell boundary through the process of Seam Carving is proposed. This approach takes advantage of the nature of the fusion process and also the shape of the pollen tube to efficiently search for the optimal cell boundary. In video segmentation, the first two frames are used to initialize the segmentation process by creating a search space based on a parametric model of the cell shape. Updates to the search space are performed based on the location of past segmentations and a prediction of the next segmentation.Experimental results show comparable accuracy to a previous method, but significant decrease in processing time. This has the potential for real time applications in pollen tube microscopy.

  5. Accuracy of the lattice-Boltzmann method using the Cell processor

    NASA Astrophysics Data System (ADS)

    Harvey, M. J.; de Fabritiis, G.; Giupponi, G.

    2008-11-01

    Accelerator processors like the new Cell processor are extending the traditional platforms for scientific computation, allowing orders of magnitude more floating-point operations per second (flops) compared to standard central processing units. However, they currently lack double-precision support and support for some IEEE 754 capabilities. In this work, we develop a lattice-Boltzmann (LB) code to run on the Cell processor and test the accuracy of this lattice method on this platform. We run tests for different flow topologies, boundary conditions, and Reynolds numbers in the range Re=6 350 . In one case, simulation results show a reduced mass and momentum conservation compared to an equivalent double-precision LB implementation. All other cases demonstrate the utility of the Cell processor for fluid dynamics simulations. Benchmarks on two Cell-based platforms are performed, the Sony Playstation3 and the QS20/QS21 IBM blade, obtaining a speed-up factor of 7 and 21, respectively, compared to the original PC version of the code, and a conservative sustained performance of 28 gigaflops per single Cell processor. Our results suggest that choice of IEEE 754 rounding mode is possibly as important as double-precision support for this specific scientific application.

  6. Employing Lead Thiocyanate Additive to Reduce the Hysteresis and Boost the Fill Factor of Planar Perovskite Solar Cells

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ke, Weijun; Xiao, Chuanxiao; Wang, Changlei

    2016-05-04

    Lead thiocyanate in the perovskite precursor can increase the grain size of a perovskite thin film and reduce the conductivity of the grain boundaries, leading to perovskite solar cells with reduced hysteresis and enhanced fill factor. A planar perovskite solar cell with grain boundary and interface passivation achieves a steady-state efficiency of 18.42%.

  7. The use of network analysis in the process of delimitation as exemplifi ed by the administrative division of Poland

    NASA Astrophysics Data System (ADS)

    Borowska-Stefańska, Marta; Wiśniewski, Szymon

    2017-12-01

    The cognitive aim of this study is to point to the optimum number of local government units and the optimum boundaries of spatial units in Poland with the assumption of minimizing the cumulated theoretical travel time to all settlement units in the country. The methodological aim, in turn, is to present the use of the ArcGIS location-allocation tool for the purposes of delimitation processes as exemplifi ed by administrative boundaries in Poland. The rationale for the implementation of this study is that number and the boundaries of units of all levels of Poland's current territorial division are far from optimum in the light of minimization of accumulated theoretical travel time to all settlement units in the country. It may be concluded that it would be justifi able to increase the number of voivodships from the current number of 16 to 18. Besides it would be necessary to introduce modifi cations in relation to units with regional functions. In contrast, the number of districts and communes should be reduced. A continuation of this research may go in the direction of including analysis of public transport network in the research, creating in this way a multimodal set of network data. This would illustrate, apart from the potential itself resulting from the infrastructure, also the actually existing connections.

  8. Modular control of endothelial sheet migration

    PubMed Central

    Vitorino, Philip; Meyer, Tobias

    2008-01-01

    Growth factor-induced migration of endothelial cell monolayers enables embryonic development, wound healing, and angiogenesis. Although collective migration is widespread and therapeutically relevant, the underlying mechanism by which cell monolayers respond to growth factor, sense directional signals, induce motility, and coordinate individual cell movements is only partially understood. Here we used RNAi to identify 100 regulatory proteins that enhance or suppress endothelial sheet migration into cell-free space. We measured multiple live-cell migration parameters for all siRNA perturbations and found that each targeted protein primarily regulates one of four functional outputs: cell motility, directed migration, cell–cell coordination, or cell density. We demonstrate that cell motility regulators drive random, growth factor-independent motility in the presence or absence of open space. In contrast, directed migration regulators selectively transduce growth factor signals to direct cells along the monolayer boundary toward open space. Lastly, we found that regulators of cell–cell coordination are growth factor-independent and reorient randomly migrating cells inside the sheet when boundary cells begin to migrate. Thus, cells transition from random to collective migration through a modular control system, whereby growth factor signals convert boundary cells into pioneers, while cells inside the monolayer reorient and follow pioneers through growth factor-independent migration and cell–cell coordination. PMID:19056882

  9. Structural incorporation of MgCl2 into ice VII at room temperature

    NASA Astrophysics Data System (ADS)

    Watanabe, Mao; Komatsu, Kazuki; Noritake, Fumiya; Kagi, Hiroyuki

    2017-05-01

    Raman spectra and X-ray diffraction patterns were obtained from 1:100 and 1:200 \\text{MgCl}2:\\text{H}2\\text{O} solutions (in molar ratio) at pressures up to 6 GPa using diamond anvil cells (DACs) and compared with those of pure water. The O-H stretching band from ice VII crystallized from the 1:200 solution was approximately 10 cm-1 higher than that of pure ice VII. The phase boundaries between ice VII and VIII crystallized from the MgCl2 solutions at 4 GPa were 2 K lower than those of pure ice VII and VIII. These observations indicate that ice VII incorporates MgCl2 into its structure. The unit cell volumes of ice VII crystallized from pure water and the two solutions coincided with each other within the experimental error, and salt incorporation was not detectable from the cell volume. Possible configurations of ion substitution and excess volume of ice VIII were simulated on the basis of density functional theory (DFT) calculations.

  10. Effect of boundary conditions on thermal plume growth

    NASA Astrophysics Data System (ADS)

    Kondrashov, A.; Sboev, I.; Rybkin, K.

    2016-07-01

    We have investigated the influence of boundary conditions on the growth rate of convective plumes. Temperature and rate fields were studied in a rectangular convective cell heated by a spot heater. The results of the full-scale test were compared with the numerical data calculated using the ANSYS CFX software package. The relationship between the heat plume growth rate and heat boundary conditions, the width and height of the cell, size of heater for different kinds of liquid was established.

  11. Eukaryotic cells and their cell bodies: Cell Theory revised.

    PubMed

    Baluska, Frantisek; Volkmann, Dieter; Barlow, Peter W

    2004-07-01

    Cell Theory, also known as cell doctrine, states that all eukaryotic organisms are composed of cells, and that cells are the smallest independent units of life. This Cell Theory has been influential in shaping the biological sciences ever since, in 1838/1839, the botanist Matthias Schleiden and the zoologist Theodore Schwann stated the principle that cells represent the elements from which all plant and animal tissues are constructed. Some 20 years later, in a famous aphorism Omnis cellula e cellula, Rudolf Virchow annunciated that all cells arise only from pre-existing cells. General acceptance of Cell Theory was finally possible only when the cellular nature of brain tissues was confirmed at the end of the 20th century. Cell Theory then rapidly turned into a more dogmatic cell doctrine, and in this form survives up to the present day. In its current version, however, the generalized Cell Theory developed for both animals and plants is unable to accommodate the supracellular nature of higher plants, which is founded upon a super-symplasm of interconnected cells into which is woven apoplasm, symplasm and super-apoplasm. Furthermore, there are numerous examples of multinucleate coenocytes and syncytia found throughout the eukaryote superkingdom posing serious problems for the current version of Cell Theory. To cope with these problems, we here review data which conform to the original proposal of Daniel Mazia that the eukaryotic cell is composed of an elemental Cell Body whose structure is smaller than the cell and which is endowed with all the basic attributes of a living entity. A complement to the Cell Body is the Cell Periphery Apparatus, which consists of the plasma membrane associated with other periphery structures. Importantly, boundary structures of the Cell Periphery Apparatus, although capable of some self-assembly, are largely produced and maintained by Cell Body activities and can be produced from it de novo. These boundary structures serve not only as mechanical support for the Cell Bodies but they also protect them from the hostile external environment and from inappropriate interactions with adjacent Cell Bodies within the organism. From the evolutionary perspective, Cell Bodies of eukaryotes are proposed to represent vestiges of hypothetical, tubulin-based 'guest' proto-cells. After penetrating the equally hypothetical actin-based 'host' proto-cells, tubulin-based 'guests' became specialized for transcribing, storing and partitioning DNA molecules via the organization of microtubules. The Cell Periphery Apparatus, on the other hand, represents vestiges of the actin-based 'host' proto-cells which have become specialized for Cell Body protection, shape control, motility and for actin-mediated signalling across the plasma membrane.

  12. New physical concepts for cell amoeboid motion.

    PubMed Central

    Evans, E

    1993-01-01

    Amoeboid motion of cells is an essential mechanism in the function of many biological organisms (e.g., the regiment of scavenger cells in the immune defense system of animals). This process involves rapid chemical polymerization (with numerous protein constituents) to create a musclelike contractile network that advances the cell over the surface. Significant progress has been made in the biology and biochemistry of motile cells, but the physical dynamics of cell spreading and contraction are not well understood. The reason is that general approaches are formulated from complex mass, momentum, and chemical reaction equations for multiphase-multicomponent flow with the nontrivial difficulty of moving boundaries. However, there are strong clues to the dynamics that allow bold steps to be taken in simplifying the physics of motion. First, amoeboid cells often exhibit exceptional kinematics, i.e., steady advance and retraction of local fixed-shape patterns. Second, recent evidence has shown that cell projections "grow" by polymerization along the advancing boundary of the cell. Together, these characteristics represent a local growth process pinned to the interfacial contour of a contractile network. As such, the moving boundary becomes tractable, but subtle features of the motion lead to specific requirements for the chemical nature of the boundary polymerization process. To demonstrate these features, simple examples for limiting conditions of substrate interaction (i.e., "strong" and "weak" adhesion) are compared with data from experimental studies of yeast particle engulfment by blood granulocytes and actin network dynamics in fishscale keratocytes. Images FIGURE 2 FIGURE 4 PMID:8494986

  13. New physical concepts for cell amoeboid motion.

    PubMed

    Evans, E

    1993-04-01

    Amoeboid motion of cells is an essential mechanism in the function of many biological organisms (e.g., the regiment of scavenger cells in the immune defense system of animals). This process involves rapid chemical polymerization (with numerous protein constituents) to create a musclelike contractile network that advances the cell over the surface. Significant progress has been made in the biology and biochemistry of motile cells, but the physical dynamics of cell spreading and contraction are not well understood. The reason is that general approaches are formulated from complex mass, momentum, and chemical reaction equations for multiphase-multicomponent flow with the nontrivial difficulty of moving boundaries. However, there are strong clues to the dynamics that allow bold steps to be taken in simplifying the physics of motion. First, amoeboid cells often exhibit exceptional kinematics, i.e., steady advance and retraction of local fixed-shape patterns. Second, recent evidence has shown that cell projections "grow" by polymerization along the advancing boundary of the cell. Together, these characteristics represent a local growth process pinned to the interfacial contour of a contractile network. As such, the moving boundary becomes tractable, but subtle features of the motion lead to specific requirements for the chemical nature of the boundary polymerization process. To demonstrate these features, simple examples for limiting conditions of substrate interaction (i.e., "strong" and "weak" adhesion) are compared with data from experimental studies of yeast particle engulfment by blood granulocytes and actin network dynamics in fishscale keratocytes.

  14. A techno-economic comparison of fuel processors utilizing diesel for solid oxide fuel cell auxiliary power units

    NASA Astrophysics Data System (ADS)

    Nehter, Pedro; Hansen, John Bøgild; Larsen, Peter Koch

    Ultra-low sulphur diesel (ULSD) is the preferred fuel for mobile auxiliary power units (APU). The commercial available technologies in the kW-range are combustion engine based gensets, achieving system efficiencies about 20%. Solid oxide fuel cells (SOFC) promise improvements with respect to efficiency and emission, particularly for the low power range. Fuel processing methods i.e., catalytic partial oxidation, autothermal reforming and steam reforming have been demonstrated to operate on diesel with various sulphur contents. The choice of fuel processing method strongly affects the SOFC's system efficiency and power density. This paper investigates the impact of fuel processing methods on the economical potential in SOFC APUs, taking variable and capital cost into account. Autonomous concepts without any external water supply are compared with anode recycle configurations. The cost of electricity is very sensitive on the choice of the O/C ratio and the temperature conditions of the fuel processor. A sensitivity analysis is applied to identify the most cost effective concept for different economic boundary conditions. The favourite concepts are discussed with respect to technical challenges and requirements operating in the presence of sulphur.

  15. An immersed boundary-simplified sphere function-based gas kinetic scheme for simulation of 3D incompressible flows

    NASA Astrophysics Data System (ADS)

    Yang, L. M.; Shu, C.; Yang, W. M.; Wang, Y.; Wu, J.

    2017-08-01

    In this work, an immersed boundary-simplified sphere function-based gas kinetic scheme (SGKS) is presented for the simulation of 3D incompressible flows with curved and moving boundaries. At first, the SGKS [Yang et al., "A three-dimensional explicit sphere function-based gas-kinetic flux solver for simulation of inviscid compressible flows," J. Comput. Phys. 295, 322 (2015) and Yang et al., "Development of discrete gas kinetic scheme for simulation of 3D viscous incompressible and compressible flows," J. Comput. Phys. 319, 129 (2016)], which is often applied for the simulation of compressible flows, is simplified to improve the computational efficiency for the simulation of incompressible flows. In the original SGKS, the integral domain along the spherical surface for computing conservative variables and numerical fluxes is usually not symmetric at the cell interface. This leads the expression of numerical fluxes at the cell interface to be relatively complicated. For incompressible flows, the sphere at the cell interface can be approximately considered to be symmetric as shown in this work. Besides that, the energy equation is usually not needed for the simulation of incompressible isothermal flows. With all these simplifications, the simple and explicit formulations for the conservative variables and numerical fluxes at the cell interface can be obtained. Second, to effectively implement the no-slip boundary condition for fluid flow problems with complex geometry as well as moving boundary, the implicit boundary condition-enforced immersed boundary method [Wu and Shu, "Implicit velocity correction-based immersed boundary-lattice Boltzmann method and its applications," J. Comput. Phys. 228, 1963 (2009)] is introduced into the simplified SGKS. That is, the flow field is solved by the simplified SGKS without considering the presence of an immersed body and the no-slip boundary condition is implemented by the immersed boundary method. The accuracy and efficiency of the present scheme are validated by simulating the decaying vortex flow, flow past a stationary and rotating sphere, flow past a stationary torus, and flows over dragonfly flight.

  16. Digital elevations and extents of regional hydrogeologic units in the Northern Atlantic Coastal Plain aquifer system from Long Island, New York, to North Carolina

    USGS Publications Warehouse

    Pope, Jason P.; Andreasen, David C.; Mcfarland, E. Randolph; Watt, Martha K.

    2016-08-31

    Digital geospatial datasets of the extents and top elevations of the regional hydrogeologic units of the Northern Atlantic Coastal Plain aquifer system from Long Island, New York, to northeastern North Carolina were developed to provide an updated hydrogeologic framework to support analysis of groundwater resources. The 19 regional hydrogeologic units were delineated by elevation grids and extent polygons for 20 layers: the land and bathymetric surface at the top of the unconfined surficial aquifer, the upper surfaces of 9 confined aquifers and 9 confining units, and the bedrock surface that defines the base of all Northern Atlantic Coastal Plain sediments. The delineation of the regional hydrogeologic units relied on the interpretive work from source reports for New York, New Jersey, Delaware and Maryland, Virginia, and North Carolina rather than from re-analysis of fundamental hydrogeologic data. This model of regional hydrogeologic unit geometries represents interpolation, extrapolation, and generalization of the earlier interpretive work. Regional units were constructed from available digital data layers from the source studies in order to extend units consistently across political boundaries and approximate units in offshore areas.Though many of the Northern Atlantic Coastal Plain hydrogeologic units may extend eastward as far as the edge of the Atlantic Continental Shelf, the modeled boundaries of all regional hydrogeologic units in this study were clipped to an area approximately defined by the furthest offshore extent of fresh to brackish water in any part of the aquifer system, as indicated by chloride concentrations of 10,000 milligrams per liter. Elevations and extents of units that do not exist onshore in Long Island, New York, were not included north of New Jersey. Hydrogeologic units in North Carolina were included primarily to provide continuity across the Virginia-North Carolina State boundary, which was important for defining the southern edge of the Northern Atlantic Coastal Plain study area.

  17. Calculation of sidewall boundary-layer parameters from rake measurements for the Langley 0.3-meter transonic cryogenic tunnel

    NASA Technical Reports Server (NTRS)

    Murthy, A. V.

    1987-01-01

    Correction of airfoil data for sidewall boundary-layer effects requires a knowledge of the boundary-layer displacement thickness and the shape factor with the tunnel empty. To facilitate calculation of these quantities under various test conditions for the Langley 0.3 m Transonic Cryogenic Tunnel, a computer program was written. This program reads the various tunnel parameters and the boundary-layer rake total head pressure measurements directly from the Engineering Unit tapes to calculate the required sidewall boundary-layer parameters. Details of the method along with the results for a sample case are presented.

  18. Hydrologic unit maps

    USGS Publications Warehouse

    Seaber, Paul R.; Kapinos, F. Paul; Knapp, George L.

    1987-01-01

    A set of maps depicting approved boundaries of, and numerical codes for, river-basin units of the United States has been developed by the U.S . Geological Survey. These 'Hydrologic Unit Maps' are four-color maps that present information on drainage, culture, hydrography, and hydrologic boundaries and codes of (1) the 21 major water-resources regions and the 222 subregions designated by the U.S . Water Resources Council, (2) the 352 accounting units of the U.S. Geological Survey's National Water Data Network, and (3) the 2,149 cataloging units of the U.S . Geological Survey's 'Catalog of information on Water Data:' The maps are plotted on the Geological Survey State base-map series at a scale of 1 :500,000 and, except for Alaska, depict hydrologic unit boundaries for all drainage basins greater than 700 square miles (1,813 square kilometers). A complete list of all the hydrologic units, along with their drainage areas, their names, and the names of the States or outlying areas in which they reside, is contained in the report. These maps and associated codes provide a standardized base for use by water-resources organizations in locating, storing, retrieving, and exchanging hydrologic data, in indexing and inventorying hydrologic data and information, in cataloging water-data acquisition activities, and in a variety of other applications. Because the maps have undergone extensive review by all principal Federal, regional, and State water-resource agencies, they are widely accepted for use in planning and describing water-use and related land-use activities, and in geographically organizing hydrologic data . Examples of these uses are given in the report . The hydrologic unit codes shown on the maps have been approved as a Federal Information Processing Standard for use by the Federal establishment.

  19. Framing of grid cells within and beyond navigation boundaries

    PubMed Central

    Savelli, Francesco; Luck, JD; Knierim, James J

    2017-01-01

    Grid cells represent an ideal candidate to investigate the allocentric determinants of the brain’s cognitive map. Most studies of grid cells emphasized the roles of geometric boundaries within the navigational range of the animal. Behaviors such as novel route-taking between local environments indicate the presence of additional inputs from remote cues beyond the navigational borders. To investigate these influences, we recorded grid cells as rats explored an open-field platform in a room with salient, remote cues. The platform was rotated or translated relative to the room frame of reference. Although the local, geometric frame of reference often exerted the strongest control over the grids, the remote cues demonstrated a consistent, sometimes dominant, countervailing influence. Thus, grid cells are controlled by both local geometric boundaries and remote spatial cues, consistent with prior studies of hippocampal place cells and providing a rich representational repertoire to support complex navigational (and perhaps mnemonic) processes. DOI: http://dx.doi.org/10.7554/eLife.21354.001 PMID:28084992

  20. Micropaleontological and Paleomagnetic Characterization of La Ceiba K/T Boundary Section, Central Mexico

    NASA Astrophysics Data System (ADS)

    Martínez-López, M.; Urrutia-Fucugauchi, J.

    2007-05-01

    We report results of a micropaleontological and magnetostratigraphic study of the La Ceiba section that spans the K/T boundary. La Ceiba is located in central Mexico (20o 19.8' N, 97o 41.0' W) within the Tampico-Mizantla basin. The K/T boundary is marked by a clastic unit of about one-meter thickness intercalated between the carbonate hemipelagic marls of the Cretaceous Mendez Formation and the Paleocene Velasco Formation. The clastic unit can be divided into four sub-units, according to their texture and architectural characteristics following Arenillas et al. (2002). The basal sub-unit is formed by calcareous marls and is rich in shocked quartz and millimeter size spherules with microtektites and bioclasts of shallow water origin. The second sub-unit is formed by medium-grained sandstones, with clasts and quartz fragments, feldspars, metamorphic and calcareous fragments and re-worked benthic and planktic foraminifera. The third sub-unit is composed by a single body of medium- to fine-grained sandstones with tabular geometry. In this sub-unit, cross- and parallel-lamination trough cross-stratification, current ripples and climbing ripples have been observed. The top sub-unit is a tabular body of fine-grained sandstones, showing parallel-lamination and low-angle cross-lamination, with asymmetric ripples and burrow traces to the top. For the paleontologic and paleomagnetic study we collected twenty-five oriented samples across the section. We measured the low-field susceptibility, intensity and direction of the NRM. The vectorial composition and stability of NRM were analyzed by progressive thermal and alternating field demagnetization. Vectorial orthogonal diagrams and vector subtraction and principal component analysis were used to determine the characteristic magnetization and secondary components for each sample. The characteristic NRM negative inclination and southward declination in the K/T clastic sediments indicate a reverse polarity, which is correlated to reverse chron 29r that spans the K/T boundary. Micropaleontology analyses permit identification of six biozones. Two biozones (biozone of Rugoglobigerina scootti and Abathomphalus mayaroensis) correspond to the Maastrichtian. Four biozones (Guembelitria cretácea, Parvularogoglobigerina eugubina, Parasubotina pseudobulloides and Acarina trinidadensis) correspond to the Danian.

  1. Multiaxial Polarity Determines Individual Cellular and Nuclear Chirality

    PubMed Central

    Raymond, Michael J.; Ray, Poulomi; Kaur, Gurleen; Fredericks, Michael; Singh, Ajay V.; Wan, Leo Q.

    2016-01-01

    Intrinsic cell chirality has been implicated in the left-right (LR) asymmetry of embryonic development. Impaired cell chirality could lead to severe birth defects in laterality. Previously, we detected cell chirality with an in vitro micropatterning system. Here, we demonstrate for the first time that chirality can be quantified as the coordination of multiaxial polarization of individual cells and nuclei. Using an object labeling, connected component based method, we characterized cell chirality based on cell and nuclear shape polarization and nuclear positioning of each cell in multicellular patterns of epithelial cells. We found that the cells adopted a LR bias the boundaries by positioning the sharp end towards the leading edge and leaving the nucleus at the rear. This behavior is consistent with the directional migration observed previously on the boundary of micropatterns. Although the nucleus is chirally aligned, it is not strongly biased towards or away from the boundary. As the result of the rear positioning of nuclei, the nuclear positioning has an opposite chirality to that of cell alignment. Overall, our results have revealed deep insights of chiral morphogenesis as the coordination of multiaxial polarization at the cellular and subcellular levels. PMID:28360944

  2. Multiaxial Polarity Determines Individual Cellular and Nuclear Chirality.

    PubMed

    Raymond, Michael J; Ray, Poulomi; Kaur, Gurleen; Fredericks, Michael; Singh, Ajay V; Wan, Leo Q

    2017-02-01

    Intrinsic cell chirality has been implicated in the left-right (LR) asymmetry of embryonic development. Impaired cell chirality could lead to severe birth defects in laterality. Previously, we detected cell chirality with an in vitro micropatterning system. Here, we demonstrate for the first time that chirality can be quantified as the coordination of multiaxial polarization of individual cells and nuclei. Using an object labeling, connected component based method, we characterized cell chirality based on cell and nuclear shape polarization and nuclear positioning of each cell in multicellular patterns of epithelial cells. We found that the cells adopted a LR bias the boundaries by positioning the sharp end towards the leading edge and leaving the nucleus at the rear. This behavior is consistent with the directional migration observed previously on the boundary of micropatterns. Although the nucleus is chirally aligned, it is not strongly biased towards or away from the boundary. As the result of the rear positioning of nuclei, the nuclear positioning has an opposite chirality to that of cell alignment. Overall, our results have revealed deep insights of chiral morphogenesis as the coordination of multiaxial polarization at the cellular and subcellular levels.

  3. Driving Solar Giant Cells through the Self-organization of Near-surface Plumes

    NASA Astrophysics Data System (ADS)

    Nelson, Nicholas J.; Featherstone, Nicholas A.; Miesch, Mark S.; Toomre, Juri

    2018-06-01

    Global 3D simulations of solar giant-cell convection have provided significant insight into the processes which yield the Sun’s observed differential rotation and cyclic dynamo action. However, as we move to higher-resolution simulations a variety of codes have encountered what has been termed the convection conundrum. As these simulations increase in resolution and hence the level of turbulence achieved, they tend to produce weak or even anti-solar differential rotation patterns associated with a weak rotational influence (high Rossby number) due to large convective velocities. One potential culprit for this convection conundrum is the upper boundary condition applied in most simulations, which is generally impenetrable. Here we present an alternative stochastic plume boundary condition which imposes small-scale convective plumes designed to mimic near-surface convective downflows, thus allowing convection to carry the majority of the outward solar energy flux up to and through our simulated upper boundary. The use of a plume boundary condition leads to significant changes in the convective driving realized in the simulated domain and thus to the convective energy transport, the dominant scale of the convective enthalpy flux, and the relative strength of the strongest downflows, the downflow network, and the convective upflows. These changes are present even far from the upper boundary layer. Additionally, we demonstrate that, in spite of significant changes, giant cell morphology in the convective patterns is still achieved with self-organization of the imposed boundary plumes into downflow lanes, cellular patterns, and even rotationally aligned banana cells in equatorial regions. This plume boundary presents an alternative pathway for 3D global convection simulations where driving is non-local and may provide a new approach toward addressing the convection conundrum.

  4. 50 CFR 226.223 - Critical habitat for the Northwest Atlantic Ocean Distinct Population Segment of the loggerhead...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ...) LOGG-N-15—Northern Boundary of River to Sea Preserve at Marineland to Granada Blvd., Flagler and... unit are nearshore areas from the north boundary of River to Sea Preserve at Marineland to Granada...

  5. Turbulent Combustion Study of Scramjet Problem

    DTIC Science & Technology

    2015-08-01

    boundary layer model for 2D simulations of a supersonic flat plate boundary layer . The inflow O2 has an average density of...flow above the flat plate has a transition from a laminar boundary layer to a turbulent boundary layer at a position downstream from the inlet. The...δ. Chapman [13] estimated the number of cells need to resolve the outer layer is proportional to Re0.4 for flat plat boundary layer and

  6. Lung segmentation from HRCT using united geometric active contours

    NASA Astrophysics Data System (ADS)

    Liu, Junwei; Li, Chuanfu; Xiong, Jin; Feng, Huanqing

    2007-12-01

    Accurate lung segmentation from high resolution CT images is a challenging task due to various detail tracheal structures, missing boundary segments and complex lung anatomy. One popular method is based on gray-level threshold, however its results are usually rough. A united geometric active contours model based on level set is proposed for lung segmentation in this paper. Particularly, this method combines local boundary information and region statistical-based model synchronously: 1) Boundary term ensures the integrality of lung tissue.2) Region term makes the level set function evolve with global characteristic and independent on initial settings. A penalizing energy term is introduced into the model, which forces the level set function evolving without re-initialization. The method is found to be much more efficient in lung segmentation than other methods that are only based on boundary or region. Results are shown by 3D lung surface reconstruction, which indicates that the method will play an important role in the design of computer-aided diagnostic (CAD) system.

  7. Pliocene geomagnetic polarity epochs

    USGS Publications Warehouse

    Dalrymple, G.B.; Cox, A.; Doell, Richard R.; Gromme, C.S.

    1967-01-01

    A paleomagnetic and K-Ar dating study of 44 upper Miocene and Pliocene volcanic units from the western United States suggests that the frequency of reversals of the earth's magnetic field during Pliocene time may have been comparable with that of the last 3.6 m.y. Although the data are too limited to permit the formal naming of any new polarity epochs or events, four polarity transitions have been identified: the W10 R/N boundary at 3.7 ?? 0.1 m.y., the A12 N/R boundary at 4.9 ?? 0.1 m.y., the W32 N/R boundary at 9.0 ?? 0.2m.y., and the W36 R/N boundary at 10.8 ?? 0.3 - 1.0 m.y. The loss of absolute resolution of K-Ar dating in older rocks indicates that the use of well defined stratigraphic successions to identify and date polarity transitions will be important in the study of Pliocene and older reversals. ?? 1967.

  8. Figure-ground segregation in a recurrent network architecture.

    PubMed

    Roelfsema, Pieter R; Lamme, Victor A F; Spekreijse, Henk; Bosch, Holger

    2002-05-15

    Here we propose a model of how the visual brain segregates textured scenes into figures and background. During texture segregation, locations where the properties of texture elements change abruptly are assigned to boundaries, whereas image regions that are relatively homogeneous are grouped together. Boundary detection and grouping of image regions require different connection schemes, which are accommodated in a single network architecture by implementing them in different layers. As a result, all units carry signals related to boundary detection as well as grouping of image regions, in accordance with cortical physiology. Boundaries yield an early enhancement of network responses, but at a later point, an entire figural region is grouped together, because units that respond to it are labeled with enhanced activity. The model predicts which image regions are preferentially perceived as figure or as background and reproduces the spatio-temporal profile of neuronal activity in the visual cortex during texture segregation in intact animals, as well as in animals with cortical lesions.

  9. Casimir stress in an inhomogeneous medium

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Philbin, T.G.; Xiong, C.; Leonhardt, U.

    2010-03-15

    The Casimir effect in an inhomogeneous dielectric is investigated using Lifshitz's theory of electromagnetic vacuum energy. A permittivity function that depends continuously on one Cartesian coordinate is chosen, bounded on each side by homogeneous dielectrics. The result for the Casimir stress is infinite everywhere inside the inhomogeneous region, a divergence that does not occur for piece-wise homogeneous dielectrics with planar boundaries. A Casimir force per unit volume can be extracted from the infinite stress but it diverges on the boundaries between the inhomogeneous medium and the homogeneous dielectrics. An alternative regularization of the vacuum stress is considered that removes themore » contribution of the inhomogeneity over small distances, where macroscopic electromagnetism is invalid. The alternative regularization yields a finite Casimir stress inside the inhomogeneous region, but the stress and force per unit volume diverge on the boundaries with the homogeneous dielectrics. The case of inhomogeneous dielectrics with planar boundaries thus falls outside the current understanding of the Casimir effect.« less

  10. Variable Combinations of Specific Ephrin Ligand/Eph Receptor Pairs Control Embryonic Tissue Separation

    PubMed Central

    Rohani, Nazanin; Parmeggiani, Andrea; Winklbauer, Rudolf; Fagotto, François

    2014-01-01

    Ephrins and Eph receptors are involved in the establishment of vertebrate tissue boundaries. The complexity of the system is puzzling, however in many instances, tissues express multiple ephrins and Ephs on both sides of the boundary, a situation that should in principle cause repulsion between cells within each tissue. Although co-expression of ephrins and Eph receptors is widespread in embryonic tissues, neurons, and cancer cells, it is still unresolved how the respective signals are integrated into a coherent output. We present a simple explanation for the confinement of repulsion to the tissue interface: Using the dorsal ectoderm–mesoderm boundary of the Xenopus embryo as a model, we identify selective functional interactions between ephrin–Eph pairs that are expressed in partial complementary patterns. The combined repulsive signals add up to be strongest across the boundary, where they reach sufficient intensity to trigger cell detachments. The process can be largely explained using a simple model based exclusively on relative ephrin and Eph concentrations and binding affinities. We generalize these findings for the ventral ectoderm–mesoderm boundary and the notochord boundary, both of which appear to function on the same principles. These results provide a paradigm for how developmental systems may integrate multiple cues to generate discrete local outcomes. PMID:25247423

  11. Variable combinations of specific ephrin ligand/Eph receptor pairs control embryonic tissue separation.

    PubMed

    Rohani, Nazanin; Parmeggiani, Andrea; Winklbauer, Rudolf; Fagotto, François

    2014-09-01

    Ephrins and Eph receptors are involved in the establishment of vertebrate tissue boundaries. The complexity of the system is puzzling, however in many instances, tissues express multiple ephrins and Ephs on both sides of the boundary, a situation that should in principle cause repulsion between cells within each tissue. Although co-expression of ephrins and Eph receptors is widespread in embryonic tissues, neurons, and cancer cells, it is still unresolved how the respective signals are integrated into a coherent output. We present a simple explanation for the confinement of repulsion to the tissue interface: Using the dorsal ectoderm-mesoderm boundary of the Xenopus embryo as a model, we identify selective functional interactions between ephrin-Eph pairs that are expressed in partial complementary patterns. The combined repulsive signals add up to be strongest across the boundary, where they reach sufficient intensity to trigger cell detachments. The process can be largely explained using a simple model based exclusively on relative ephrin and Eph concentrations and binding affinities. We generalize these findings for the ventral ectoderm-mesoderm boundary and the notochord boundary, both of which appear to function on the same principles. These results provide a paradigm for how developmental systems may integrate multiple cues to generate discrete local outcomes.

  12. The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

    PubMed Central

    Rodríguez-Carballo, Eddie; Lopez-Delisle, Lucille; Zhan, Ye; Fabre, Pierre J.; Beccari, Leonardo; El-Idrissi, Imane; Huynh, Thi Hanh Nguyen; Ozadam, Hakan; Dekker, Job; Duboule, Denis

    2017-01-01

    The mammalian HoxD cluster lies between two topologically associating domains (TADs) matching distinct enhancer-rich regulatory landscapes. During limb development, the telomeric TAD controls the early transcription of Hoxd genes in forearm cells, whereas the centromeric TAD subsequently regulates more posterior Hoxd genes in digit cells. Therefore, the TAD boundary prevents the terminal Hoxd13 gene from responding to forearm enhancers, thereby allowing proper limb patterning. To assess the nature and function of this CTCF-rich DNA region in embryos, we compared chromatin interaction profiles between proximal and distal limb bud cells isolated from mutant stocks where various parts of this boundary region were removed. The resulting progressive release in boundary effect triggered inter-TAD contacts, favored by the activity of the newly accessed enhancers. However, the boundary was highly resilient, and only a 400-kb deletion, including the whole-gene cluster, was eventually able to merge the neighboring TADs into a single structure. In this unified TAD, both proximal and distal limb enhancers nevertheless continued to work independently over a targeted transgenic reporter construct. We propose that the whole HoxD cluster is a dynamic TAD border and that the exact boundary position varies depending on both the transcriptional status and the developmental context. PMID:29273679

  13. How grain boundaries affect the efficiency of poly-CdTe solar-cells: A fundamental atomic-scale study of grain boundary dislocation cores using CdTe bi-crystal thin films.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Klie, Robert

    It is now widely accepted that grain boundaries in poly-crystalline CdTe thin film devices have a detrimental effect on the minority carrier lifetimes, the open circuit voltage and therefore the overall solar-cell performance. The goal of this project was to develop a fundamental understanding of the role of grain boundaries in CdTe on the carrier life-time, open-circuit voltage, Voc, and the diffusion of impurities. To achieve this goal, i) CdTe bi-crystals were fabricated with various misorientation angels, ii) the atomic- and electronic structures of the grain boundaries were characterized using scanning transmission electron microscopy (STEM), and iii) first-principles density functionalmore » theory modeling was performed on the structures determined by STEM to predict the grain boundary potential. The transport properties and minority carrier lifetimes of the bi-crystal grain boundaries were measured using a variety of approaches, including TRPL, and provided feedback to the characterization and modeling effort about the effectiveness of the proposed models.« less

  14. Groundwater Flow Model of Corrective Action Units 101 and 102: Central and Western Pahute Mesa, Nevada Test Site, Nye County, Nevada, Revision 0

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Greg Ruskauff

    2006-06-01

    The Pahute Mesa groundwater flow model supports the FFACO UGTA corrective action strategy objective of providing an estimate of the vertical and horizontal extent of contaminant migration for each CAU in order to predict contaminant boundaries. A contaminant boundary is the model-predicted perimeter that defines the extent of radionuclide-contaminated groundwater from underground nuclear testing above background conditions exceeding Safe Drinking Water Act (SDWA) standards. The contaminant boundary will be composed of both a perimeter boundary and a lower hydrostratigraphic unit (HSU) boundary. Additional results showing contaminant concentrations and the location of the contaminant boundary at selected times will also bemore » presented. These times may include the verification period, the end of the five-year proof-of-concept period, as well as other times that are of specific interest. The FFACO (1996) requires that the contaminant transport model predict the contaminant boundary at 1,000 years and “at a 95% level of confidence.” The Pahute Mesa Phase I flow model described in this report provides, through the flow fields derived from alternative hydrostratigraphic framework models (HFMs) and recharge models, one part of the data required to compute the contaminant boundary. Other components include the simplified source term model, which incorporates uncertainty and variability in the factors that control radionuclide release from an underground nuclear test (SNJV, 2004a), and the transport model with the concomitant parameter uncertainty as described in Shaw (2003). The uncertainty in all the above model components will be evaluated to produce the final contaminant boundary. This report documents the development of the groundwater flow model for the Central and Western Pahute Mesa CAUs.« less

  15. In-depth analysis of chloride treatments for thin-film CdTe solar cells

    PubMed Central

    Major, J. D.; Al Turkestani, M.; Bowen, L.; Brossard, M.; Li, C.; Lagoudakis, P.; Pennycook, S. J.; Phillips, L. J.; Treharne, R. E.; Durose, K.

    2016-01-01

    CdTe thin-film solar cells are now the main industrially established alternative to silicon-based photovoltaics. These cells remain reliant on the so-called chloride activation step in order to achieve high conversion efficiencies. Here, by comparison of effective and ineffective chloride treatments, we show the main role of the chloride process to be the modification of grain boundaries through chlorine accumulation, which leads an increase in the carrier lifetime. It is also demonstrated that while improvements in fill factor and short circuit current may be achieved through use of the ineffective chlorides, or indeed simple air annealing, voltage improvement is linked directly to chlorine incorporation at the grain boundaries. This suggests that focus on improved or more controlled grain boundary treatments may provide a route to achieving higher cell voltages and thus efficiencies. PMID:27775037

  16. Dynamics of place, boundary and object encoding in rat anterior claustrum

    PubMed Central

    Jankowski, Maciej M.; O’Mara, Shane M.

    2015-01-01

    Discrete populations of brain cells signal differing types of spatial information. These “spatial cells” are largely confined to a closely-connected network of sites. We describe here, for the first time, cells in the anterior claustrum of the freely-moving rat encoding place, boundary and object information. This novel claustral spatial signal potentially directly modulates a wide variety of anterior cortical regions. We hypothesize that one of the functions of the claustrum is to provide information about body position, boundaries and landmark information, enabling dynamic control of behavior. PMID:26557060

  17. Minimizing hydrodynamic stress in mammalian cell culture through the lobed Taylor-Couette bioreactor.

    PubMed

    Sorg, Robin; Tanzeglock, Timm; Soos, Miroslav; Morbidelli, Massimo; Périlleux, Arnaud; Solacroup, Thomas; Broly, Hervé

    2011-12-01

    The objective of the present study was to investigate the effect of hydrodynamic stress heterogeneity on metabolism and productivity of an industrial mammalian cell line. For this purpose, a novel Lobed Taylor-Couette (LTC) mixing unit combining a narrow distribution of hydrodynamic stresses and a membrane aeration system to prevent cell damage by bubble bursting was developed. A hydrodynamic analysis of the LTC was developed to reproduce, in a uniform hydrodynamic environment, the same hydrodynamic stress encountered locally by cells in a stirred tank, particularly at the large scale, e.g., close and far from the impeller. The developed LTC was used to simulate the stress values near the impeller of a laboratory stirred tank bioreactor, equal to about 0.4 Pa, which is however below the threshold value leading to cell death. It was found that the cells actively change their metabolism by increasing lactate production and decreasing titer while the consumption of the main nutrients remains substantially unchanged. When considering average stress values ranging from 1 to 10 Pa found by other researchers to cause physiological response of cells to the hydrodynamic stress in heterogeneous stirred vessels, our results are close to the lower boundary of this interval. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. Recombination activity of nickel, copper, and oxygen atoms segregating at grain boundaries in mono-like silicon crystals

    NASA Astrophysics Data System (ADS)

    Ohno, Yutaka; Kutsukake, Kentaro; Deura, Momoko; Yonenaga, Ichiro; Shimizu, Yasuo; Ebisawa, Naoki; Inoue, Koji; Nagai, Yasuyoshi; Yoshida, Hideto; Takeda, Seiji

    2016-10-01

    Three-dimensional distribution of impurity atoms was determined at functional Σ5{013} and small-angle grain boundaries (GBs) in as-grown mono-like silicon crystals by atom probe tomography combined with transmission electron microscopy, and it was correlated with the recombination activity of those GBs, CGB, revealed by photoluminescence imaging. Nickel (Ni), copper (Cu), and oxygen atoms preferentially segregated at the GBs on which arrays of dislocations existed, while those atoms scarcely segregated at Σ5{013} GBs free from dislocations. Silicides containing Ni and Cu about 5 nm in size and oxides about 1 nm in size were formed along the dislocation arrays on those GBs. The number of segregating impurity atoms per unit GB area for Ni and that for Cu, NNi and NCu, were in a trade-off correlation with that for oxygen, NO, as a function of CGB, while the sum of those numbers was almost constant irrespective of the GB character, CGB, and the dislocation density on GBs. CGB would be explained as a linear combination of those numbers: CGB (in %) ˜400(0.38NO + NNi + NCu) (in atoms/nm2). The GB segregation of oxygen atoms would be better for solar cells, rather than that of metal impurities, from a viewpoint of the conversion efficiency of solar cells.

  19. 40 CFR 503.23 - Pollutant limits (other than domestic septage).

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... limits (other than domestic septage). (a) Active sewage sludge unit without a liner and leachate... Concentrations—Active Sewage Sludge Unit Without a Liner and Leachate Collection Pollutant Concentration... Without a Liner and Leachate Collection System That Has a Unit Boundary to Property Line Distance Less...

  20. 40 CFR 503.23 - Pollutant limits (other than domestic septage).

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... limits (other than domestic septage). (a) Active sewage sludge unit without a liner and leachate... Concentrations—Active Sewage Sludge Unit Without a Liner and Leachate Collection Pollutant Concentration... Without a Liner and Leachate Collection System That Has a Unit Boundary to Property Line Distance Less...

  1. 40 CFR 503.23 - Pollutant limits (other than domestic septage).

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... limits (other than domestic septage). (a) Active sewage sludge unit without a liner and leachate... Concentrations—Active Sewage Sludge Unit Without a Liner and Leachate Collection Pollutant Concentration... Without a Liner and Leachate Collection System That Has a Unit Boundary to Property Line Distance Less...

  2. 40 CFR 503.23 - Pollutant limits (other than domestic septage).

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... limits (other than domestic septage). (a) Active sewage sludge unit without a liner and leachate... Concentrations—Active Sewage Sludge Unit Without a Liner and Leachate Collection Pollutant Concentration... Without a Liner and Leachate Collection System That Has a Unit Boundary to Property Line Distance Less...

  3. 40 CFR 503.23 - Pollutant limits (other than domestic septage).

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... limits (other than domestic septage). (a) Active sewage sludge unit without a liner and leachate... Concentrations—Active Sewage Sludge Unit Without a Liner and Leachate Collection Pollutant Concentration... Without a Liner and Leachate Collection System That Has a Unit Boundary to Property Line Distance Less...

  4. A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity

    PubMed Central

    Cerchiari, Alec E.; Garbe, James C.; Jee, Noel Y.; Todhunter, Michael E.; Broaders, Kyle E.; Peehl, Donna M.; Desai, Tejal A.; LaBarge, Mark A.; Thomson, Matthew; Gartner, Zev J.

    2015-01-01

    Developing tissues contain motile populations of cells that can self-organize into spatially ordered tissues based on differences in their interfacial surface energies. However, it is unclear how self-organization by this mechanism remains robust when interfacial energies become heterogeneous in either time or space. The ducts and acini of the human mammary gland are prototypical heterogeneous and dynamic tissues comprising two concentrically arranged cell types. To investigate the consequences of cellular heterogeneity and plasticity on cell positioning in the mammary gland, we reconstituted its self-organization from aggregates of primary cells in vitro. We find that self-organization is dominated by the interfacial energy of the tissue–ECM boundary, rather than by differential homo- and heterotypic energies of cell–cell interaction. Surprisingly, interactions with the tissue–ECM boundary are binary, in that only one cell type interacts appreciably with the boundary. Using mathematical modeling and cell-type-specific knockdown of key regulators of cell–cell cohesion, we show that this strategy of self-organization is robust to severe perturbations affecting cell–cell contact formation. We also find that this mechanism of self-organization is conserved in the human prostate. Therefore, a binary interfacial interaction with the tissue boundary provides a flexible and generalizable strategy for forming and maintaining the structure of two-component tissues that exhibit abundant heterogeneity and plasticity. Our model also predicts that mutations affecting binary cell–ECM interactions are catastrophic and could contribute to loss of tissue architecture in diseases such as breast cancer. PMID:25633040

  5. Electrostatic energy of transfer and macrobond analyses of intermolecular interactions and hydration effects in protein crystals in a low ionic environment

    NASA Astrophysics Data System (ADS)

    Sugawara, Yoko; Hirano, Yuji; Yamamura, Shigefumi; Endo, Shigeru; Ootaki, Masanori; Matsumoto, Naoki; Takahashi, Takuya

    2017-06-01

    We developed an electrostatic energy of transfer (EET) analysis applicable to periodic boundary condition, including a nonrectangular unit cell. It was applied to monoclinic ribonuclease A crystallized with ethanol as a precipitant. Macrobond analysis was also carried out. Owing to the low ionic strength of the solvent region, atomic EET values were non-negligible even at long-distance points. Most of the molecular EET values-defined as the individual contribution of each surrounding molecule-were positive. The inclusion of the molecular EET values of hydration water molecules reduced the repulsive force, and the evaluation of hydration effects in protein crystals was found to be imperative.

  6. Geomorphological Mapping of Sputnik Planum on Pluto

    NASA Astrophysics Data System (ADS)

    White, Oliver; Moore, Jeffrey M.; Stern, S. Alan; Weaver, Harold A.; Olkin, Catherine B.; Ennico, Kimberly; Young, Leslie; Cheng, Andrew F.; New Horizons Geology, Geophysics and Imaging Theme Team, New Horizons Composition Theme Team

    2016-10-01

    The New Horizons flyby of Pluto in July 2015 provided extensive high-resolution coverage of its encounter hemisphere. The most prominent surface feature in this hemisphere is the high albedo region informally named Tombaugh Regio, the western portion of which is represented by the expansive nitrogen ice plains informally named Sputnik Planum. A large fraction of Sputnik Planum displays a distinct cellular pattern, with individual cells typically displaying ovoid planforms and shallow pitting on a scale of a few hundred meters. Troughs with medial ridges define the boundaries between cells. Prior studies have argued that this pattern is indicative of solid-state convection occurring within the nitrogen ice. The southern non-cellular plains are either featureless or display dense fields of often elongate and aligned pits typically reaching a few km across, which are interpreted to have formed via sublimation.The mapping that will be presented at DPS focuses on identifying the different plains units that compose Sputnik Planum and defining the boundaries between them, which aids in assessing their time sequencing and correlation to one another. The cellular plains are divided into bright and dark units; the nature of the contact between the two indicates that ice of the bright plains, interpreted to have been recently emplaced via glacial flow from the highlands to the east of Sputnik Planum, is overlying ice of the dark plains, interpreted to be an older ice mass with a higher abundance of entrained dark material. Reconciling the seemingly contradictory models of a layered and also convecting Sputnik Planum requires consideration of the timescale of lateral flow of the bright plains ice relative to the timescale of convective overturn. The non-cellular plains are universally bright and display evidence for southwards flow of the ice, based on the orientations of elongate sublimation pits as well as the presence of 'extinct cells' that appear to have migrated away from the zone of active convection. The larger pits that occur within the non-cellular plains imply that these plains are older than the cellular plains, where resurfacing via convection limits the maximum size attainable by sublimation pits.

  7. Experimentally Shock-loaded Anhydrite: Unit-Cell Dimensions, Microstrain and Domain Size from X-Ray Diffraction

    NASA Technical Reports Server (NTRS)

    Skala, R.; Hoerz, F.

    2003-01-01

    Cretaceous Tertiary (K/T) boundary is traditionally associated with one of the most dramatic mass extinctions in the Earth history. A number of killing mechanisms have been suggested to contribute to the widespread extinctions of Cretaceous biota at this boundary, including severe, global deterioration of the atmosphere and hydrosphere from the shock-induced release of CO2 and SO(x) from carbonate- and sulfate-bearing target rocks, respectively. Recently carried out calculations revealed that the global warming caused by CO2 release was considerably less important than the cooling due to SO(x) gases release during the Chicxulub impact event. Considering apparent potential importance of the response of sulfates to the shock metamorphism, relative lack of the data on shock behavior of sulfates as well as some general difficulties encountered during thermodynamic modeling of the shock-induced CO2 loss from carbonates we subjected anhydrite to a series of shock experiments designed for complete recovery of the shocked material. We report here on the detail X-ray diffraction analysis of seven samples that were subjected to experimental shock-loading from 10 to 65 GPa.

  8. Notch-dependent epithelial fold determines boundary formation between developmental fields in the Drosophila antenna.

    PubMed

    Ku, Hui-Yu; Sun, Y Henry

    2017-07-01

    Compartment boundary formation plays an important role in development by separating adjacent developmental fields. Drosophila imaginal discs have proven valuable for studying the mechanisms of boundary formation. We studied the boundary separating the proximal A1 segment and the distal segments, defined respectively by Lim1 and Dll expression in the eye-antenna disc. Sharp segregation of the Lim1 and Dll expression domains precedes activation of Notch at the Dll/Lim1 interface. By repressing bantam miRNA and elevating the actin regulator Enable, Notch signaling then induces actomyosin-dependent apical constriction and epithelial fold. Disruption of Notch signaling or the actomyosin network reduces apical constriction and epithelial fold, so that Dll and Lim1 cells become intermingled. Our results demonstrate a new mechanism of boundary formation by actomyosin-dependent tissue folding, which provides a physical barrier to prevent mixing of cells from adjacent developmental fields.

  9. Notch-dependent epithelial fold determines boundary formation between developmental fields in the Drosophila antenna

    PubMed Central

    2017-01-01

    Compartment boundary formation plays an important role in development by separating adjacent developmental fields. Drosophila imaginal discs have proven valuable for studying the mechanisms of boundary formation. We studied the boundary separating the proximal A1 segment and the distal segments, defined respectively by Lim1 and Dll expression in the eye-antenna disc. Sharp segregation of the Lim1 and Dll expression domains precedes activation of Notch at the Dll/Lim1 interface. By repressing bantam miRNA and elevating the actin regulator Enable, Notch signaling then induces actomyosin-dependent apical constriction and epithelial fold. Disruption of Notch signaling or the actomyosin network reduces apical constriction and epithelial fold, so that Dll and Lim1 cells become intermingled. Our results demonstrate a new mechanism of boundary formation by actomyosin-dependent tissue folding, which provides a physical barrier to prevent mixing of cells from adjacent developmental fields. PMID:28708823

  10. Size-Dependent Grain-Boundary Structure with Improved Conductive and Mechanical Stabilities in Sub-10-nm Gold Crystals

    NASA Astrophysics Data System (ADS)

    Wang, Chunyang; Du, Kui; Song, Kepeng; Ye, Xinglong; Qi, Lu; He, Suyun; Tang, Daiming; Lu, Ning; Jin, Haijun; Li, Feng; Ye, Hengqiang

    2018-05-01

    Low-angle grain boundaries generally exist in the form of dislocation arrays, while high-angle grain boundaries (misorientation angle >15 ° ) exist in the form of structural units in bulk metals. Here, through in situ atomic resolution aberration corrected electron microscopy observations, we report size-dependent grain-boundary structures improving both stabilities of electrical conductivity and mechanical properties in sub-10-nm-sized gold crystals. With the diameter of a nanocrystal decreasing below 10 nm, the high-angle grain boundary in the crystal exists as an array of dislocations. This size effect may be of importance to a new generation of interconnects applications.

  11. Creating a single twin boundary between two CdTe (111) wafers with controlled rotation angle by wafer bonding

    NASA Astrophysics Data System (ADS)

    Sun, Ce; Lu, Ning; Wang, Jinguo; Lee, Jihyung; Peng, Xin; Klie, Robert F.; Kim, Moon J.

    2013-12-01

    The single twin boundary with crystallographic orientation relationship (1¯1¯1¯)//(111) [01¯1]//[011¯] was created by wafer bonding. Electron diffraction patterns and high-resolution transmission electron microscopy images demonstrated the well control of the rotation angle between the bonded pair. At the twin boundary, one unit of wurtzite structure was found between two zinc-blende matrices. High-angle annular dark-field scanning transmission electron microscopy images showed Cd- and Te-terminated for the two bonded portions, respectively. The I-V curve across the twin boundary showed increasingly nonlinear behavior, indicating a potential barrier at the bonded twin boundary.

  12. Percentage of Protected Area Amounts within each Watershed Boundary for the Conterminous US

    EPA Science Inventory

    Abstract: This dataset uses spatial information from the Watershed Boundary Dataset (WBD, March 2011) and the Protected Areas Database of the United States (PAD-US Version 1.0). The resulting data layer, with percentages of protected areas by category, was created using the ATtI...

  13. 49 CFR 71.10 - Pacific zone.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... Office of the Secretary of Transportation STANDARD TIME ZONE BOUNDARIES § 71.10 Pacific zone. The fifth zone, the Pacific standard time zone, includes that part of the continental United States that is west of the boundary line between the mountain and Pacific standard time zones described in § 71.9, but...

  14. Boundary-Spanner Role Conflict in Public Urban Universities

    ERIC Educational Resources Information Center

    Gauntner, Joseph; Hansman, Catherine A.

    2017-01-01

    It is common for universities that seek community partnerships to employ full-time staff, formally sanctioned as boundary spanners, to develop and manage such partnerships. These staff are frequently administrative or allied staff rather than tenure-track faculty or academic unit administrators. Given the multiple interests of universities and…

  15. Employing Lead Thiocyanate Additive to Reduce the Hysteresis and Boost the Fill Factor of Planar Perovskite Solar Cells.

    PubMed

    Ke, Weijun; Xiao, Chuanxiao; Wang, Changlei; Saparov, Bayrammurad; Duan, Hsin-Sheng; Zhao, Dewei; Xiao, Zewen; Schulz, Philip; Harvey, Steven P; Liao, Weiqiang; Meng, Weiwei; Yu, Yue; Cimaroli, Alexander J; Jiang, Chun-Sheng; Zhu, Kai; Al-Jassim, Mowafak; Fang, Guojia; Mitzi, David B; Yan, Yanfa

    2016-07-01

    Lead thiocyanate in the perovskite precursor can increase the grain size of a perovskite thin film and reduce the conductivity of the grain boundaries, leading to perovskite solar cells with reduced hysteresis and enhanced fill factor. A planar perovskite solar cell with grain boundary and interface passivation achieves a steady-state efficiency of 18.42%. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  16. 22 CFR 1103.150 - Program accessibility: Existing facilities.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... MEXICO, UNITED STATES SECTION ENFORCEMENT OF NONDISCRIMINATION ON THE BASIS OF HANDICAP IN PROGRAMS OR ACTIVITIES CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES... extent compelled by the Architectural Barriers Act of 1968, as amended (42 U.S.C. 4151-4157), and any...

  17. 22 CFR 1103.150 - Program accessibility: Existing facilities.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... MEXICO, UNITED STATES SECTION ENFORCEMENT OF NONDISCRIMINATION ON THE BASIS OF HANDICAP IN PROGRAMS OR ACTIVITIES CONDUCTED BY INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES... extent compelled by the Architectural Barriers Act of 1968, as amended (42 U.S.C. 4151-4157), and any...

  18. The nucleus is irreversibly shaped by motion of cell boundaries in cancer and non-cancer cells.

    PubMed

    Tocco, Vincent J; Li, Yuan; Christopher, Keith G; Matthews, James H; Aggarwal, Varun; Paschall, Lauren; Luesch, Hendrik; Licht, Jonathan D; Dickinson, Richard B; Lele, Tanmay P

    2018-02-01

    Actomyosin stress fibers impinge on the nucleus and can exert compressive forces on it. These compressive forces have been proposed to elongate nuclei in fibroblasts, and lead to abnormally shaped nuclei in cancer cells. In these models, the elongated or flattened nuclear shape is proposed to store elastic energy. However, we found that deformed shapes of nuclei are unchanged even after removal of the cell with micro-dissection, both for smooth, elongated nuclei in fibroblasts and abnormally shaped nuclei in breast cancer cells. The lack of shape relaxation implies that the nuclear shape in spread cells does not store any elastic energy, and the cellular stresses that deform the nucleus are dissipative, not static. During cell spreading, the deviation of the nucleus from a convex shape increased in MDA-MB-231 cancer cells, but decreased in MCF-10A cells. Tracking changes of nuclear and cellular shape on micropatterned substrata revealed that fibroblast nuclei deform only during deformations in cell shape and only in the direction of nearby moving cell boundaries. We propose that motion of cell boundaries exert a stress on the nucleus, which allows the nucleus to mimic cell shape. The lack of elastic energy in the nuclear shape suggests that nuclear shape changes in cells occur at constant surface area and volume. © 2017 Wiley Periodicals, Inc.

  19. The influence of grain boundary geometry on intergranular crack propagation in Ni[sub 3]Al

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hui Lin; Pope, D.P.

    1993-02-01

    The distribution of grain boundary types along intergranular cracks in Ni[sub 3]Al was measured, by [Sigma] value, and compared to the distribution in the bulk, using statistically significant sample sizes. It was found that low angle ([Sigma] 1) and symmetrical [Sigma]3 boundaries (twins) are particularly strong, and all high angle boundaries, independent of their [Sigma] values are weak. In particular, low [Sigma], high angle boundaries, as a group, are also weak. These results are in qualitative agreement with predictions based on the structural unit model and imply that the fracture strength of an intergranularly brittle polycrystalline aggregate can be increasedmore » only by increasing the fraction of low angle and symmetrical [Sigma]3 boundaries.« less

  20. Environmental boundaries as a mechanism for correcting and anchoring spatial maps

    PubMed Central

    2016-01-01

    Abstract Ubiquitous throughout the animal kingdom, path integration‐based navigation allows an animal to take a circuitous route out from a home base and using only self‐motion cues, calculate a direct vector back. Despite variation in an animal's running speed and direction, medial entorhinal grid cells fire in repeating place‐specific locations, pointing to the medial entorhinal circuit as a potential neural substrate for path integration‐based spatial navigation. Supporting this idea, grid cells appear to provide an environment‐independent metric representation of the animal's location in space and preserve their periodic firing structure even in complete darkness. However, a series of recent experiments indicate that spatially responsive medial entorhinal neurons depend on environmental cues in a more complex manner than previously proposed. While multiple types of landmarks may influence entorhinal spatial codes, environmental boundaries have emerged as salient landmarks that both correct error in entorhinal grid cells and bind internal spatial representations to the geometry of the external spatial world. The influence of boundaries on error correction and grid symmetry points to medial entorhinal border cells, which fire at a high rate only near environmental boundaries, as a potential neural substrate for landmark‐driven control of spatial codes. The influence of border cells on other entorhinal cell populations, such as grid cells, could depend on plasticity, raising the possibility that experience plays a critical role in determining how external cues influence internal spatial representations. PMID:26563618

  1. Arabidopsis and Tobacco SUPERMAN regulate hormone signalling and mediate cell proliferation and differentiation

    PubMed Central

    Nibau, Candida; Di Stilio, Verónica S.; Wu, Hen-ming; Cheung, Alice Y.

    2011-01-01

    Arabidopsis thaliana SUPERMAN (SUP) plays an important role during flower development by maintaining the boundary between stamens and carpels in the inner two whorls. It was proposed that SUP maintains this boundary by regulating cell proliferation in both whorls, as loss-of-function superman mutants produce more stamens at the expense of carpels. However, the cellular mechanism that underlies SUP function remains unknown. Here Arabidopsis or tobacco (Nicotiana tabacum) SUP was overexpressed in tobacco plants to substantiate SUP's role as a regulator of cell proliferation and boundary definition and provide evidence that its biological role may be mediated via hormonal changes. It was found that moderate levels of SUP stimulated cell growth and proliferation, whereas high levels were inhibitory. SUP stimulated auxin- and cytokinin-regulated processes, and cells overexpressing SUP displayed reduced hormone dependency for proliferation and regeneration into plants. SUP also induced proliferation of female traits in the second and third flower whorls and promoted differentiation of petaloid properties in sepals, further supporting a role for SUP as a boundary regulator. Moreover, cytokinin suppressed stamen development and promoted differentiation of carpeloid tissues, suggesting that SUP may regulate male and female development via its effect on cytokinin signalling. Taken together, these observations suggest a model whereby the effect of SUP on cell growth and proliferation involves the modulation of auxin- and cytokinin-regulated processes. Furthermore, differential SUP expression or different sensitivities of different cell types to SUP may determine whether SUP stimulates or suppresses their proliferation. PMID:20980362

  2. A Simulation Study of the Overdetermined Geodetic Boundary Value Problem Using Collocation

    DTIC Science & Technology

    1989-03-01

    9 APPROVED FOR PUBLIC RELEASE; DISTRIBUTION UNLIMITED GEOPHYSICS LABORATORY AIR FORCE SYSTEMS COMMAND UNITED STATES AIR FORCE HANSCOM AIR FORCE BASE...linearized integral equation is obtained through an infinite system of integral equations which is solved step by step by means of Stokes’ function. The...computed. Since 9 and W = W(9) 4 are known on the boundary, then the boundary is known in the new coordinate system . The serious disadvantage of this

  3. Geometrical and topological issues in octree based automatic meshing

    NASA Technical Reports Server (NTRS)

    Saxena, Mukul; Perucchio, Renato

    1987-01-01

    Finite element meshes derived automatically from solid models through recursive spatial subdivision schemes (octrees) can be made to inherit the hierarchical structure and the spatial addressability intrinsic to the underlying grid. These two properties, together with the geometric regularity that can also be built into the mesh, make octree based meshes ideally suited for efficient analysis and self-adaptive remeshing and reanalysis. The element decomposition of the octal cells that intersect the boundary of the domain is discussed. The problem, central to octree based meshing, is solved by combining template mapping and element extraction into a procedure that utilizes both constructive solid geometry and boundary representation techniques. Boundary cells that are not intersected by the edge of the domain boundary are easily mapped to predefined element topology. Cells containing edges (and vertices) are first transformed into a planar polyhedron and then triangulated via element extractor. The modeling environments required for the derivation of planar polyhedra and for element extraction are analyzed.

  4. Octree based automatic meshing from CSG models

    NASA Technical Reports Server (NTRS)

    Perucchio, Renato

    1987-01-01

    Finite element meshes derived automatically from solid models through recursive spatial subdivision schemes (octrees) can be made to inherit the hierarchical structure and the spatial addressability intrinsic to the underlying grid. These two properties, together with the geometric regularity that can also be built into the mesh, make octree based meshes ideally suited for efficient analysis and self-adaptive remeshing and reanalysis. The element decomposition of the octal cells that intersect the boundary of the domain is emphasized. The problem, central to octree based meshing, is solved by combining template mapping and element extraction into a procedure that utilizes both constructive solid geometry and boundary respresentation techniques. Boundary cells that are not intersected by the edge of the domain boundary are easily mapped to predefined element topology. Cells containing edges (and vertices) are first transformed into a planar polyhedron and then triangulated via element extractors. The modeling environments required for the derivation of planar polyhedra and for element extraction are analyzed.

  5. The importance of the boundary condition in the transport of intensity equation based phase measurement

    NASA Astrophysics Data System (ADS)

    Zhang, Jialin; Chen, Qian; Li, Jiaji; Zuo, Chao

    2017-02-01

    The transport of intensity equation (TIE) is a powerful tool for direct quantitative phase retrieval in microscopy imaging. However, there may be some problems when dealing with the boundary condition of the TIE. The previous work introduces a hard-edged aperture to the camera port of the traditional bright field microscope to generate the boundary signal for the TIE solver. Under this Neumann boundary condition, we can obtain the quantitative phase without any assumption or prior knowledge about the test object and the setup. In this paper, we will demonstrate the effectiveness of this method based on some experiments in practice. The micro lens array will be used for the comparison of two TIE solvers results based on introducing the aperture or not and this accurate quantitative phase imaging technique allows measuring cell dry mass which is used in biology to follow cell cycle, to investigate cell metabolism, or to address effects of drugs.

  6. Hexamethylenetetramine-mediated growth of grain-boundary-passivation CH3NH3PbI3 for highly reproducible and stable perovskite solar cells

    NASA Astrophysics Data System (ADS)

    Zheng, Yan-Zhen; Li, Xi-Tao; Zhao, Er-Fei; Lv, Xin-Ding; Meng, Fan-Li; Peng, Chao; Lai, Xue-Sen; Huang, Meilan; Cao, Guozhong; Tao, Xia; Chen, Jian-Feng

    2018-02-01

    Simultaneously achieving the long-term device stability and reproducibility has proven challenging in perovskite solar cells because solution-processing produced perovskite film with grain boundary is sensitive to moisture. Herein, we develop a hexamethylenetetramine (HMTA)-mediated one-step solution-processing deposition strategy that leads to the formation of high-purity and grain-boundary-passivation CH3NH3PbI3 film and thereby advances cell optoelectronic performance. Through morphological and structural characterizations and theoretical calculations, we demonstrate that HMTA fully occupies the moisture-exposed surface to build a bridge across grain boundary and coordinates with Pb ions to inhibit the formation of detrimental PbI2. Such HMTA-mediated grown CH3NH3PbI3 films achieves a decent augmentation of power conversion efficiency (PCE) from 12.70% to 17.87%. A full coverage of PbI2-free CH3NH3PbI3 surface on ZnO also boosts the device's stability and reproducibility.

  7. In-depth analysis of chloride treatments for thin-film CdTe solar cells

    DOE PAGES

    Major, J. D.; Al Turkestani, M.; Bowen, L.; ...

    2016-10-24

    CdTe thin-film solar cells are now the main industrially established alternative to silicon-based photovoltaics. These cells remain reliant on the so-called chloride activation step in order to achieve high conversion efficiencies. Here, by comparison of effective and ineffective chloride treatments, we show the main role of the chloride process to be the modification of grain boundaries through chlorine accumulation, which leads an increase in the carrier lifetime. It is also demonstrated that while improvements in fill factor and short circuit current may be achieved through use of the ineffective chlorides, or indeed simple air annealing, voltage improvement is linked directlymore » to chlorine incorporation at the grain boundaries. Lastly, this suggests that focus on improved or more controlled grain boundary treatments may provide a route to achieving higher cell voltages and thus efficiencies.« less

  8. Molluscan extinction patterns across the Cenomanian-Turonian stage boundary in the western interior of the United States

    USGS Publications Warehouse

    Elder, W.P.

    1989-01-01

    High-resolution stratigraphic analysis of 18 sections spanning the Cenomanian-Turonian Stage boundary in the western interior of the United States has allowed determination of the magnitude and pattern of molluscan extinction and disruption. Composite range data from all sections show that the faunal turnover across the stage boundary occurs in a series of narrow stratigraphic zones, defined by multiple first and last occurrences, separated by intervals displaying little or no taxonomic turnover. Two of the apparent extinction steps (bottom and top of the Neocardioceras juddii Zone) may be intercontinentally developed. The additional steps apparently reflect cyclic changes in water mass and substrate characteristics in the western interior basin produced in response to orbital forcing of climate. The most affected mollusks were those having intercontinental distributions. -Author

  9. Convective transport over the central United States and its role in regional CO and ozone budgets

    NASA Technical Reports Server (NTRS)

    Thompson, Anne M.; Pickering, Kenneth E.; Dickerson, Russell R.; Ellis, William G., Jr.; Jacob, Daniel J.; Scala, John R.; Tao, Wei-Kuo; Mcnamara, Donna P.; Simpson, Joanne

    1994-01-01

    We have constructed a regional budget for boundary layer carbon monoxide over the central United States (32.5 deg - 50 deg N, 90 deg - 105 deg W), emphasizing a detailed evaluation of deep convective vertical fluxes appropriate for the month of June. Deep convective venting of the boundary layer (upward) dominates other components of the CO budget, e.g., downward convective transport, loss of CO by oxidation, anthropogenic emissions, and CO produced from oxidation of methane, isoprene, and anthropogenic nonmethane hydrocarbons (NMHCs). Calculations of deep convective venting are based on the method pf Pickering et al.(1992a) which uses a satellite-derived deep convective cloud climatology along with transport statistics from convective cloud model simulations of observed prototype squall line events. This study uses analyses of convective episodes in 1985 and 1989 and CO measurements taken during several midwestern field campaigns. Deep convective venting of the boundary layer over this moderately polluted region provides a net (upward minus downward) flux of 18.1 x 10(exp 8) kg CO/month to the free troposphere during early summer. Shallow cumulus and synoptic-scale weather systems together make a comparable contribution (total net flux 16.2 x 10(exp 8) kg CO/month). Boundary layer venting of CO with other O3 precursors leads to efficient free troposheric O3 formation. We estimate that deep convective transport of CO and other precursors over the central United States in early summer leads to a gross production of 0.66 - 1.1 Gmol O3/d in good agreement with estimates of O3 production from boundary layer venting in a continental-scale model (Jacob et al., 1993a, b). On this respect the central U.S. region acts as s `chimney' for the country, and presumably this O3 contributes to high background levels of O3 in the eastern United States and O3 export to the North Atlantic.

  10. Link of grabens and reactivated mantle boundaries in western Bohemian Massif

    NASA Astrophysics Data System (ADS)

    Babuska, Vladislav; Plomerova, Jaroslava; Vecsey, Ludek; Munzarova, Helena

    2015-04-01

    To study relations between mantle and crustal fabrics in the Bohemian Massif (BM), we model 3D anisotropy of the mantle lithosphere by inverting and interpreting jointly P-wave travel-time deviations and shear-wave splitting parameters of teleseismic waves recorded at portable and permanent stations operating in the BM for more than 20 years. Changes in orientation of the large-scale anisotropy in the mantle lithosphere, caused by systematic preferred orientation of olivine, identify boundaries of domains representing original micro-plates assembled during the Variscan orogeny. Consistent anisotropy of the mantle-lithosphere domains, with distinct changes at their boundaries, documents rigidity and a long memory of pervasive olivine fabrics. Some of the palaeo-plate boundaries represent weak elements of the assemblage that can be later rejuvenated. This is why graben structures in the western BM developed above the identified mantle boundaries. The Eger (Ohře) Rift (ER) originated above the ENE oriented mantle suture between the Saxothuringian (ST) in the north-west and the Moldanubian (MD) and Teplá-Barrandian (TB) in the south-east. The most significant graben structure, accompanied by a rich Cenozoic volcanic activity, developed above the central part of the ST/TB suture that witnessed a subduction down to ~150 km, as documented by findings of microdiamonds in ST granulites. The smaller-scale NNW oriented Cheb-Domažlice Graben (CDG) is located above the mantle boundary between the western rim of the TB and the MD. Unlike the suture beneath the ER, this boundary does not show any sign of a deep subduction and it is characterized by a less well developed graben structure and a weak volcanic activity. In both grabens we observe local shifts between the equivalent crustal and mantle boundaries of the units as large as ~20 km. The shift indicates a Variscan detachment of the crust from the mantle lithosphere. Cenozoic rifting and the graben structures developed preferably above the mantle boundaries, often away from the boundaries of the crustal units.

  11. The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes.

    PubMed

    Rodríguez-Carballo, Eddie; Lopez-Delisle, Lucille; Zhan, Ye; Fabre, Pierre J; Beccari, Leonardo; El-Idrissi, Imane; Huynh, Thi Hanh Nguyen; Ozadam, Hakan; Dekker, Job; Duboule, Denis

    2017-11-15

    The mammalian HoxD cluster lies between two topologically associating domains (TADs) matching distinct enhancer-rich regulatory landscapes. During limb development, the telomeric TAD controls the early transcription of Hoxd genes in forearm cells, whereas the centromeric TAD subsequently regulates more posterior Hoxd genes in digit cells. Therefore, the TAD boundary prevents the terminal Hoxd13 gene from responding to forearm enhancers, thereby allowing proper limb patterning. To assess the nature and function of this CTCF-rich DNA region in embryos , we compared chromatin interaction profiles between proximal and distal limb bud cells isolated from mutant stocks where various parts of this boundary region were removed. The resulting progressive release in boundary effect triggered inter-TAD contacts, favored by the activity of the newly accessed enhancers. However, the boundary was highly resilient, and only a 400-kb deletion, including the whole-gene cluster, was eventually able to merge the neighboring TADs into a single structure. In this unified TAD, both proximal and distal limb enhancers nevertheless continued to work independently over a targeted transgenic reporter construct. We propose that the whole HoxD cluster is a dynamic TAD border and that the exact boundary position varies depending on both the transcriptional status and the developmental context. © 2017 Rodríguez-Carballo et al.; Published by Cold Spring Harbor Laboratory Press.

  12. Framing the grid: effect of boundaries on grid cells and navigation.

    PubMed

    Krupic, Julija; Bauza, Marius; Burton, Stephen; O'Keefe, John

    2016-11-15

    Cells in the mammalian hippocampal formation subserve neuronal representations of environmental location and support navigation in familiar environments. Grid cells constitute one of the main cell types in the hippocampal formation and are widely believed to represent a universal metric of space independent of external stimuli. Recent evidence showing that grid symmetry is distorted in non-symmetrical environments suggests that a re-examination of this hypothesis is warranted. In this review we will discuss behavioural and physiological evidence for how environmental shape and in particular enclosure boundaries influence grid cell firing properties. We propose that grid cells encode the geometric layout of enclosures. © 2016 The Authors. The Journal of Physiology © 2016 The Physiological Society.

  13. Digital surfaces and thicknesses of selected hydrogeologic units of the Floridan aquifer system in Florida and parts of Georgia, Alabama, and South Carolina

    USGS Publications Warehouse

    Williams, Lester J.; Dixon, Joann F.

    2015-01-01

    Digital surfaces and thicknesses of selected hydrogeologic units of the Floridan aquifer system were developed to define an updated hydrogeologic framework as part of the U.S. Geological Survey Groundwater Resources Program. The dataset contains structural surfaces depicting the top and base of the aquifer system, its major and minor hydrogeologic units and zones, geophysical marker horizons, and the altitude of the 10,000-milligram-per-liter total dissolved solids boundary that defines the approximate fresh and saline parts of the aquifer system. The thicknesses of selected major and minor units or zones were determined by interpolating points of known thickness or from raster surface subtraction of the structural surfaces. Additional data contained include clipping polygons; regional polygon features that represent geologic or hydrogeologic aspects of the aquifers and the minor units or zones; data points used in the interpolation; and polygon and line features that represent faults, boundaries, and other features in the aquifer system.

  14. Effects of model layer simplification using composite hydraulic properties

    USGS Publications Warehouse

    Sepúlveda, Nicasio; Kuniansky, Eve L.

    2010-01-01

    The effects of simplifying hydraulic property layering within an unconfined aquifer and the underlying confining unit were assessed. The hydraulic properties of lithologic units within the unconfined aquifer and confining unit were computed by analyzing the aquifer-test data using radial, axisymmetric two-dimensional (2D) flow. Time-varying recharge to the unconfined aquifer and pumping from the confined Upper Floridan aquifer (USA) were simulated using 3D flow. Conceptual flow models were developed by gradually reducing the number of lithologic units in the unconfined aquifer and confining unit by calculating composite hydraulic properties for the simplified lithologic units. Composite hydraulic properties were calculated using either thickness-weighted averages or inverse modeling using regression-based parameter estimation. No significant residuals were simulated when all lithologic units comprising the unconfined aquifer were simulated as one layer. The largest residuals occurred when the unconfined aquifer and confining unit were aggregated into a single layer (quasi-3D), with residuals over 100% for the leakage rates to the confined aquifer and the heads in the confining unit. Residuals increased with contrasts in vertical hydraulic conductivity between the unconfined aquifer and confining unit. Residuals increased when the constant-head boundary at the bottom of the Upper Floridan aquifer was replaced with a no-flow boundary.

  15. Eukaryotic Cells and their Cell Bodies: Cell Theory Revised

    PubMed Central

    BALUŠKA, FRANTIŠEK; VOLKMANN, DIETER; BARLOW, PETER W.

    2004-01-01

    • Background Cell Theory, also known as cell doctrine, states that all eukaryotic organisms are composed of cells, and that cells are the smallest independent units of life. This Cell Theory has been influential in shaping the biological sciences ever since, in 1838/1839, the botanist Matthias Schleiden and the zoologist Theodore Schwann stated the principle that cells represent the elements from which all plant and animal tissues are constructed. Some 20 years later, in a famous aphorism Omnis cellula e cellula, Rudolf Virchow annunciated that all cells arise only from pre‐existing cells. General acceptance of Cell Theory was finally possible only when the cellular nature of brain tissues was confirmed at the end of the 20th century. Cell Theory then rapidly turned into a more dogmatic cell doctrine, and in this form survives up to the present day. In its current version, however, the generalized Cell Theory developed for both animals and plants is unable to accommodate the supracellular nature of higher plants, which is founded upon a super‐symplasm of interconnected cells into which is woven apoplasm, symplasm and super‐apoplasm. Furthermore, there are numerous examples of multinucleate coenocytes and syncytia found throughout the eukaryote superkingdom posing serious problems for the current version of Cell Theory. • Scope To cope with these problems, we here review data which conform to the original proposal of Daniel Mazia that the eukaryotic cell is composed of an elemental Cell Body whose structure is smaller than the cell and which is endowed with all the basic attributes of a living entity. A complement to the Cell Body is the Cell Periphery Apparatus, which consists of the plasma membrane associated with other periphery structures. Importantly, boundary stuctures of the Cell Periphery Apparatus, although capable of some self‐assembly, are largely produced and maintained by Cell Body activities and can be produced from it de novo. These boundary structures serve not only as mechanical support for the Cell Bodies but they also protect them from the hostile external environment and from inappropriate interactions with adjacent Cell Bodies within the organism. • Conclusions From the evolutionary perspective, Cell Bodies of eukaryotes are proposed to represent vestiges of hypothetical, tubulin‐based ‘guest’ proto‐cells. After penetrating the equally hypothetical actin‐based ‘host’ proto‐cells, tubulin‐based ‘guests’ became specialized for transcribing, storing and partitioning DNA molecules via the organization of microtubules. The Cell Periphery Apparatus, on the other hand, represents vestiges of the actin‐based ‘host’ proto‐cells which have become specialized for Cell Body protection, shape control, motility and for actin‐mediated signalling across the plasma membrane. PMID:15155376

  16. Interim MELCOR Simulation of the Fukushima Daiichi Unit 2 Accident Reactor Core Isolation Cooling Operation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ross, Kyle W.; Gauntt, Randall O.; Cardoni, Jeffrey N.

    2013-11-01

    Data, a brief description of key boundary conditions, and results of Sandia National Laboratories’ ongoing MELCOR analysis of the Fukushima Unit 2 accident are given for the reactor core isolation cooling (RCIC) system. Important assumptions and related boundary conditions in the current analysis additional to or different than what was assumed/imposed in the work of SAND2012-6173 are identified. This work is for the U.S. Department of Energy’s Nuclear Energy University Programs fiscal year 2014 Reactor Safety Technologies Research and Development Program RC-7: RCIC Performance under Severe Accident Conditions.

  17. Density functional theory investigation of opto-electronic properties of thieno[3,4-b]thiophene and benzodithiophene polymer and derivatives and their applications in solar cell

    NASA Astrophysics Data System (ADS)

    Khoshkholgh, Mehri Javan; Marsusi, Farah; Abolhassani, Mohammad Reza

    2015-02-01

    PTBs polymers with thieno[3,4-b]thiophene [TT] and benzodithiophene [BDT] units have particular properties, which demonstrate it as one of the best group of donor materials in organic solar cells. In the present work, density functional theory (DFT) is applied to investigate the optimized structure, the highest occupied molecular orbital (HOMO), the lowest unoccupied molecular orbital (LUMO), band gap and dihedral angle of PTB7 at B3LYP/6-31G(d). Two different approaches are applied to carry out these investigations: Oligomer extrapolation technique and periodic boundary condition (PBC) method. The results obtained from PBC-DFT method are in fair agreement with experiments. Based on these reliable outcomes; the investigations continued to perform some derivatives of PTB7. In this study, sulfur is substituted by nitrogen, oxygen, silicon, phosphor or selenium atoms in pristine PTB7. Due to the shift of HOMO and LUMO levels, smaller band gaps are predicted to appear in some derivatives in comparison with PTB7. Maximum theoretical efficiencies, η, of the mentioned derivatives as well as local difference of dipole moments between the ground and excited states (Δμge) are computed. The results indicate that substitution of sulfur by nitrogen or oxygen in BDT unit, and silicon or phosphor in TT unit of pristine PTB7 leads to a higher η as well as Δμge.

  18. Density functional theory investigation of opto-electronic properties of thieno[3,4-b]thiophene and benzodithiophene polymer and derivatives and their applications in solar cell.

    PubMed

    Khoshkholgh, Mehri Javan; Marsusi, Farah; Abolhassani, Mohammad Reza

    2015-02-05

    PTBs polymers with thieno[3,4-b]thiophene [TT] and benzodithiophene [BDT] units have particular properties, which demonstrate it as one of the best group of donor materials in organic solar cells. In the present work, density functional theory (DFT) is applied to investigate the optimized structure, the highest occupied molecular orbital (HOMO), the lowest unoccupied molecular orbital (LUMO), band gap and dihedral angle of PTB7 at B3LYP/6-31G(d). Two different approaches are applied to carry out these investigations: Oligomer extrapolation technique and periodic boundary condition (PBC) method. The results obtained from PBC-DFT method are in fair agreement with experiments. Based on these reliable outcomes; the investigations continued to perform some derivatives of PTB7. In this study, sulfur is substituted by nitrogen, oxygen, silicon, phosphor or selenium atoms in pristine PTB7. Due to the shift of HOMO and LUMO levels, smaller band gaps are predicted to appear in some derivatives in comparison with PTB7. Maximum theoretical efficiencies, η, of the mentioned derivatives as well as local difference of dipole moments between the ground and excited states (Δμge) are computed. The results indicate that substitution of sulfur by nitrogen or oxygen in BDT unit, and silicon or phosphor in TT unit of pristine PTB7 leads to a higher η as well as Δμge. Copyright © 2014 Elsevier B.V. All rights reserved.

  19. Quaternary geologic map of the Glasgow 1° x 2° quadrangle, Montana

    USGS Publications Warehouse

    Fullerton, David S.; Colton, Roger B.; Bush, Charles A.

    2012-01-01

    The Glasgow quadrangle encompasses approximately 16,084 km2 (6,210 mi2). The northern boundary is the Montana/Saskatchewan (U.S./Canada) boundary. The quadrangle is in the Northern Plains physiographic province and it includes the Boundary Plateau, Peerless Plateau, and Larb Hills. The primary river is the Milk River. The map units are surficial deposits and materials, not landforms. Deposits that comprise some constructional landforms (for example, ground-moraine deposits, end-moraine deposits, and stagnation-moraine deposits, all composed of till) are distinguished for purposes of reconstruction of glacial history. Surficial deposits and materials are assigned to 23 map units on the basis of genesis, age, lithology or composition, texture or particle size, and other physical, chemical, and engineering characteristics. It is not a map of soils that are recognized in pedology or agronomy. Rather, it is a generalized map of soils recognized in engineering geology, or of substrata or parent materials in which pedologic or agronomic soils are formed. Glaciotectonic (ice-thrust) structures and deposits are mapped separately, represented by a symbol. The surficial deposits are glacial, ice-contact, glaciofluvial, alluvial, lacustrine, eolian, colluvial, and mass-movement deposits. Residuum, a surficial material, also is mapped. Till of late Wisconsin age is represented by three map units. Till of Illinoian age is also represented locally but is widespread in the subsurface. This map was prepared to serve as a database for compilation of a Quaternary geologic map of the United States and Canada (scale 1:1,000,000). Letter symbols for the map units are those used for the same units in the Quaternary Geologic Atlas of the United States map series.

  20. The Central Hardwood Forest: its boundaries and physiographic provinces

    Treesearch

    James S. Fralish

    2003-01-01

    The Central Hardwood Forest (CHF) refers to the area where deciduous hardwood species overwhelmingly, but not exclusively, dominate the stands and cover types that occur as repeating units across the landscape. Transition zones where Central Hardwood species mix with species from adjacent regions identify boundaries of the region. These regions are the Northern...

  1. The Central Hardwood Forest: Its Boundaries and Physiographic Provinces

    Treesearch

    James S. Fralish

    2003-01-01

    The Central Hardwood Forest (CHF) refers to the area where deciduous hardwood species overwhelmingly, but not exclusively, dominate the stands and cover types that occur as repeating units across the landscape. Transition zones where Central Hardwood species mix with species from adjacent regions identify boundaries of the region. These regions are the Northern...

  2. 49 CFR 71.6 - Central zone.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... Office of the Secretary of Transportation STANDARD TIME ZONE BOUNDARIES § 71.6 Central zone. The third zone, the central standard time zone, includes that part of the United States that is west of the boundary line between the eastern and central standard time zones described in § 71.5 and east of the...

  3. 49 CFR 71.8 - Mountain zone.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... Office of the Secretary of Transportation STANDARD TIME ZONE BOUNDARIES § 71.8 Mountain zone. The fourth zone, the mountain standard time zone, includes that part of the United States that is west of the boundary line between the central and mountain standard time zones described in § 71.7 and east of the...

  4. 78 FR 17645 - Agency Information Collection Activities; Submission to the Office of Management and Budget for...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-22

    ... the school boundaries. The NCES mapping system is the only system in the United States to nationally... DEPARTMENT OF EDUCATION [Docket No. ED-2012-ICCD-0070] Agency Information Collection Activities... Boundary Survey (SABS) 2013-2015 AGENCY: Institute of Education Sciences (IES), National Center for...

  5. Conodonts of the Mississippian/Pennsylvanian boundary interval in Central Iran

    NASA Astrophysics Data System (ADS)

    Bahrami, A.; Boncheva, I.; Königshof, P.; Yazdi, M.; Ebrahimi Khan-Abadi, A.

    2014-10-01

    The record of conodonts related to the Mississippian/Pennsylvanian boundary interval was investigated in four sections in Central Iran from two different structural units. Two sections from the Sanandaj-Sirjan trend zone (Asad-abad, and Darchaleh sections) and two from the East-Central Iran Microplate (Shesh-angosht and Kale-Sardar sections) exhibit a nearly complete record previously described across the Mississippian/Pennsylvanian boundary in Iran. The investigated sections can be subdivided in three formations (Ghaleh-, Absheni-, and Zaluda Formation) which belong to the Sardar Group. The mid-Carboniferous boundary was defined by the occurrence of Declinognathus noduliferus s.l.. Bio-event characteristics of the Carboniferous conodont fauna (Mississippian genera Gnathodus and Lochriea have been replaced by Pennsylvanian genera Declinognathus and Idiognathodus) as well as sedimentological changes within overall shallow water deposits were located approximately 33° S of the paleoequator and suggest sea-level changes within the framework of the Late Paleozoic Ice Age (LPIA). Furthermore, a widespread crinoid marker horizon previously described from two localities in Iran can be subdivided into three units of different ages.

  6. The reservoir of ozone in the boundary layer of the eastern United States and its potential impact on the global tropospheric ozone budget

    NASA Technical Reports Server (NTRS)

    Vukovich, F. M.; Fishman, J.; Browell, E. V.

    1985-01-01

    An analysis of available ozone data in the eastern two-thirds of the United States indicates that a substantial reservoir of ozone is present in the summertime. Five-year mean concentrations range from 40 to 65 ppbv. The reservoir covered an area of several million square kilometers and extends vertically from the surface to 1 to 2 km. The vertical distribution of ozone in the reservoir during midday supports a transport of additional ozone from the boundary layer to the free troposphere. Data are presented demonstrating the potential effect of transport by convective clouds and by the sea breeze circulation - mechanisms by which ozone may be transported out of the boundary layer into the free troposphere. The potential impact of this reservoir on the tropospheric ozone budget is discussed. It is shown that if less than half of the ozone mass in this reservoir is transported to the free troposphere, then the amount of ozone transported out of the boundary layer approximates the amount of ozone transported downward during a tropopause fold event.

  7. Filamin A Mediates Wound Closure by Promoting Elastic Deformation and Maintenance of Tension in the Collagen Matrix

    PubMed Central

    Mohammadi, Hamid; Pinto, Vanessa I.; Wang, Yongqiang; Hinz, Boris; Janmey, Paul A.; McCulloch, Christopher A.

    2016-01-01

    Cell-mediated remodeling and wound closure are critical for efficient wound healing, but the contribution of actin-binding proteins to contraction of the extracellular matrix is not defined. We examined the role of filamin A (FLNa), an actin filament cross-linking protein, in wound contraction and maintenance of matrix tension. Conditional deletion of FLNa in fibroblasts in mice was associated with ~ 4 day delay of full-thickness skin wound contraction compared with wild-type (WT) mice. We modeled the healing wound matrix using cultured fibroblasts plated on grid-supported collagen gels that create lateral boundaries, which are analogues to wound margins. In contrast to WT cells, FLNa knockdown (KD) cells could not completely maintain tension when matrix compaction was resisted by boundaries, which manifested as relaxed matrix tension. Similarly, WT cells on cross-linked collagen, which requires higher levels of sustained tension, exhibited approximately fivefold larger deformation fields and approximately twofold greater fiber alignment compared with FLNa KD cells. Maintenance of boundary-resisted tension markedly influenced the elongation of cell extensions: in WT cells, the number (~50%) and length (~300%) of cell extensions were greater than FLNa KD cells. We conclude that FLNa is required for wound contraction, in part by enabling elastic deformation and maintenance of tension in the matrix. PMID:26134946

  8. Effect of Surface Waviness on Transition in Three-Dimensional Boundary-Layer Flow

    NASA Technical Reports Server (NTRS)

    Masad, Jamal A.

    1996-01-01

    The effect of a surface wave on transition in three-dimensional boundary-layer flow over an infinite swept wing was studied. The mean flow computed using interacting boundary-layer theory, and transition was predicted using linear stability theory coupled with the empirical eN method. It was found that decreasing the wave height, sweep angle, or freestream unit Reynolds number, and increasing the freestream Mach number or suction level all stabilized the flow and moved transition onset to downstream locations.

  9. Boundary layer temperature measurements of a noctual urban boundary layer

    NASA Astrophysics Data System (ADS)

    Holloway, Simon; Ricketts, Hugo; Vaughan, Geraint

    2018-04-01

    A low-power lidar system based in Manchester, United Kingdom has been developed to measure temperature profiles in the nocturnal urban boundary layer. The lidar transmitter uses a 355nm diode-pumped solid state Nd:YAG laser and two narrow-band interference filters in the receiver filter out rotational Raman lines that are dependent on temperature. The spectral response of the lidar is calibrated using a monochromator. Temperature profiles measured by the system are calibrated by comparison to co-located radiosondes.

  10. The Behavior of the Atmosphere in the Desert Planetary Boundary Layer.

    DTIC Science & Technology

    1983-06-30

    i5962 THE BEHAVIOR OF THE ATMOSPHERE IN THE DESERT PL NET RY 1/i. BOUNDARY LAVERMU BEN-GURION UNIV OF THE NEGEV SEDE BOGER (ISRAEL) JACOB BLAUST...DESERT PLANETARY BOUNDARY LAYER Louis Berkofsky The Jacob Blaustein Institute for Desert Research Ben-Gurion University of the Negev Sede Boqer Campus...TASK- nm insl1tute for esert Research AREA A WORK UNiT NUMBERS Ben-Gurion University of the Negev Sede Boqer Campus 84990, Israel F- 3 / St

  11. 12-Digit Watershed Boundary Data 1:24,000 for EPA Region 2 and Surrounding States (NAT_HYDROLOGY.HUC12_NRCS_REG2)

    EPA Pesticide Factsheets

    12 digit Hydrologic Units (HUCs) for EPA Region 2 and surrounding states (Northeastern states, parts of the Great Lakes, Puerto Rico and the USVI) downloaded from the Natural Resources Conservation Service (NRCS) Geospatial Gateway and imported into the EPA Region 2 Oracle/SDE database. This layer reflects 2009 updates to the national Watershed Boundary Database (WBD) that included new boundary data for New York and New Jersey.

  12. Geographic Information System Software to Remodel Population Data Using Dasymetric Mapping Methods

    USGS Publications Warehouse

    Sleeter, Rachel; Gould, Michael

    2007-01-01

    The U.S. Census Bureau provides decadal demographic data collected at the household level and aggregated to larger enumeration units for anonymity purposes. Although this system is appropriate for the dissemination of large amounts of national demographic data, often the boundaries of the enumeration units do not reflect the distribution of the underlying statistical phenomena. Conventional mapping methods such as choropleth mapping, are primarily employed due to their ease of use. However, the analytical drawbacks of choropleth methods are well known ranging from (1) the artificial transition of population at the boundaries of mapping units to (2) the assumption that the phenomena is evenly distributed across the enumeration unit (when in actuality there can be significant variation). Many methods to map population distribution have been practiced in geographic information systems (GIS) and remote sensing fields. Many cartographers prefer dasymetric mapping to map population because of its ability to more accurately distribute data over geographic space. Similar to ?choropleth maps?, a dasymetric map utilizes standardized data (for example, census data). However, rather than using arbitrary enumeration zones to symbolize population distribution, a dasymetric approach introduces ancillary information to redistribute the standardized data into zones relative to land use and land cover (LULC), taking into consideration actual changing densities within the boundaries of the enumeration unit. Thus, new zones are created that correlate to the function of the map, capturing spatial variations in population density. The transfer of data from census enumeration units to ancillary-driven homogenous zones is performed by a process called areal interpolation.

  13. Comparison of theoretical and experimental boundary-layer development in a Mach 2.5 mixed-compression inlet

    NASA Technical Reports Server (NTRS)

    Hingst, W. R.; Towne, C. E.

    1974-01-01

    An analytical investigation was made of the boundary layer flow in an axisymmetric Mach 2.5 mixed compression inlet, and the results were compared with experimental measurements. The inlet tests were conducted in the Lewis 10- by 10-foot supersonic wind tunnel at a unit Reynolds number of 8.2 million/m. The inlet incorporated porous bleed regions for boundary layer control, and the effect of this bleed was taken into account in the analysis. The experimental boundary layer data were analyzed by using similarity laws from which the skin friction coefficient was obtained. The boundary layer analysis included predictions of laminar and turbulent boundary layer growth, transition, and the effects of the shock boundary layer interactions. In addition, the surface static pressures were compared with those obtained from an inviscid characteristics program. The results of investigation showed that the analytical techniques gave satisfactory predictions of the boundary layer flow except in regions that were badly distorted by the terminal shock.

  14. Semaphorin6A acts as a gate keeper between the central and the peripheral nervous system

    PubMed Central

    Mauti, Olivier; Domanitskaya, Elena; Andermatt, Irwin; Sadhu, Rejina; Stoeckli, Esther T

    2007-01-01

    Background During spinal cord development, expression of chicken SEMAPHORIN6A (SEMA6A) is almost exclusively found in the boundary caps at the ventral motor axon exit point and at the dorsal root entry site. The boundary cap cells are derived from a population of late migrating neural crest cells. They form a transient structure at the transition zone between the peripheral nervous system (PNS) and the central nervous system (CNS). Ablation of the boundary cap resulted in emigration of motoneurons from the ventral spinal cord along the ventral roots. Based on its very restricted expression in boundary cap cells, we tested for a role of Sema6A as a gate keeper between the CNS and the PNS. Results Downregulation of Sema6A in boundary cap cells by in ovo RNA interference resulted in motoneurons streaming out of the spinal cord along the ventral roots, and in the failure of dorsal roots to form and segregate properly. PlexinAs interact with class 6 semaphorins and are expressed by both motoneurons and sensory neurons. Knockdown of PlexinA1 reproduced the phenotype seen after loss of Sema6A function both at the ventral motor exit point and at the dorsal root entry site of the lumbosacral spinal cord. Loss of either PlexinA4 or Sema6D function had an effect only at the dorsal root entry site but not at the ventral motor axon exit point. Conclusion Sema6A acts as a gate keeper between the PNS and the CNS both ventrally and dorsally. It is required for the clustering of boundary cap cells at the PNS/CNS interface and, thus, prevents motoneurons from streaming out of the ventral spinal cord. At the dorsal root entry site it organizes the segregation of dorsal roots. PMID:18088409

  15. Pitot-probe displacement in a supersonic turbulent boundary layer

    NASA Technical Reports Server (NTRS)

    Allen, J. M.

    1972-01-01

    Eight circular pitot probes ranging in size from 2 to 70 percent of the boundary-layer thickness were tested to provide experimental probe displacement results in a two-dimensional turbulent boundary layer at a nominal free-stream Mach number of 2 and unit Reynolds number of 8 million per meter. The displacement obtained in the study was larger than that reported by previous investigators in either an incompressible turbulent boundary layer or a supersonic laminar boundary layer. The large probes indicated distorted Mach number profiles, probably due to separation. When the probes were small enough to cause no appreciable distortion, the displacement was constant over most of the boundary layer. The displacement in the near-wall region decreased to negative displacement in some cases. This near-wall region was found to extend to about one probe diameter from the test surface.

  16. Simultaneous wall-shear-stress and wide-field PIV measurements in a turbulent boundary layer

    NASA Astrophysics Data System (ADS)

    Gomit, Guillaume; Fourrie, Gregoire; de Kat, Roeland; Ganapathisubramani, Bharathram

    2015-11-01

    Simultaneous particle image velocimetry (PIV) and hot-film shear stress sensor measurements were performed to study the large-scale structures associated with shear stress events in a flat plate turbulent boundary layer at a high Reynolds number (Reτ ~ 4000). The PIV measurement was performed in a streamwise-wall normal plane using an array of six high resolution cameras (4 ×16MP and 2 ×29MP). The resulting field of view covers 8 δ (where δ is the boundary layer thickness) in the streamwise direction and captures the entire boundary layer in the wall-normal direction. The spatial resolution of the measurement is approximately is approximately 70 wall units (1.8 mm) and sampled each 35 wall units (0.9 mm). In association with the PIV setup, a spanwise array of 10 skin-friction sensors (spanning one δ) was used to capture the footprint of the large-scale structures. This combination of measurements allowed the analysis of the three-dimensional conditional structures in the boundary layer. Particularly, from conditional averages, the 3D organisation of the wall normal and streamwise velocity components (u and v) and the Reynolds shear stress (-u'v') related to a low and high shear stress events can be extracted. European Research Council Grant No-277472-WBT.

  17. Genome-Wide Identification of Chromatin Transitional Regions Reveals Diverse Mechanisms Defining the Boundary of Facultative Heterochromatin

    PubMed Central

    Li, Guangyao; Zhou, Lei

    2013-01-01

    Due to the self-propagating nature of the heterochromatic modification H3K27me3, chromatin barrier activities are required to demarcate the boundary and prevent it from encroaching into euchromatic regions. Studies in Drosophila and vertebrate systems have revealed several important chromatin barrier elements and their respective binding factors. However, epigenomic data indicate that the binding of these factors are not exclusive to chromatin boundaries. To gain a comprehensive understanding of facultative heterochromatin boundaries, we developed a two-tiered method to identify the Chromatin Transitional Region (CTR), i.e. the nucleosomal region that shows the greatest transition rate of the H3K27me3 modification as revealed by ChIP-Seq. This approach was applied to identify CTRs in Drosophila S2 cells and human HeLa cells. Although many insulator proteins have been characterized in Drosophila, less than half of the CTRs in S2 cells are associated with known insulator proteins, indicating unknown mechanisms remain to be characterized. Our analysis also revealed that the peak binding of insulator proteins are usually 1–2 nucleosomes away from the CTR. Comparison of CTR-associated insulator protein binding sites vs. those in heterochromatic region revealed that boundary-associated binding sites are distinctively flanked by nucleosome destabilizing sequences, which correlates with significant decreased nucleosome density and increased binding intensities of co-factors. Interestingly, several subgroups of boundaries have enhanced H3.3 incorporation but reduced nucleosome turnover rate. Our genome-wide study reveals that diverse mechanisms are employed to define the boundaries of facultative heterochromatin. In both Drosophila and mammalian systems, only a small fraction of insulator protein binding sites co-localize with H3K27me3 boundaries. However, boundary-associated insulator binding sites are distinctively flanked by nucleosome destabilizing sequences, which correlates with significantly decreased nucleosome density and increased binding of co-factors. PMID:23840609

  18. Perception of hierarchical boundaries in music and its modulation by expertise.

    PubMed

    Zhang, Jingjing; Jiang, Cunmei; Zhou, Linshu; Yang, Yufang

    2016-10-01

    Hierarchical structure with units of different timescales is a key feature of music. For the perception of such structures, the detection of each boundary is crucial. Here, using electroencephalography (EEG), we explore the perception of hierarchical boundaries in music, and test whether musical expertise modifies such processing. Musicians and non-musicians were presented with musical excerpts containing boundaries at three hierarchical levels, including section, phrase and period boundaries. Non-boundary was chosen as a baseline condition. Recordings from musicians showed CPS (closure positive shift) was evoked at all the three boundaries, and their amplitude increased as the hierarchical level became higher, which suggest that musicians could represent music events at different timescales in a hierarchical way. For non-musicians, the CPS was only elicited at the period boundary and undistinguishable negativities were induced at all the three boundaries. The results indicate that a different and less clear way was used by non-musicians in boundary perception. Our findings reveal, for the first time, an ERP correlate of perceiving hierarchical boundaries in music, and show that the phrasing ability could be enhanced by musical expertise. Copyright © 2016 Elsevier Ltd. All rights reserved.

  19. Three-phase boundary length in solid-oxide fuel cells: A mathematical model

    NASA Astrophysics Data System (ADS)

    Janardhanan, Vinod M.; Heuveline, Vincent; Deutschmann, Olaf

    A mathematical model to calculate the volume specific three-phase boundary length in the porous composite electrodes of solid-oxide fuel cell is presented. The model is exclusively based on geometrical considerations accounting for porosity, particle diameter, particle size distribution, and solids phase distribution. Results are presented for uniform particle size distribution as well as for non-uniform particle size distribution.

  20. Patterns of racial and educational assortative mating in Brazil.

    PubMed

    Gullickson, Aaron; Torche, Florencia

    2014-06-01

    Exchange of racial for educational status has been documented for black/white marriages in the United States. Exchange may be an idiosyncratic feature of U.S. society, resulting from unusually strong racial boundaries historically developed there. We examine status exchange across racial lines in Brazil. In contrast to the United States, Brazil features greater fluidity of racial boundaries and a middle tier of "brown" individuals. If exchange is contingent on strong racial boundaries, it should be weak or non-existent in Brazilian society. Contrary to this expectation, we find strong evidence of status exchange. However, this pattern results from a generalized penalty for darkness, which induces a negative association between higher education and marrying darker spouses ("market exchange") rather than from a direct trading of resources by partners ("dyadic exchange"). The substantive and methodological distinction between market and dyadic exchange helps clarify and integrate prior findings in the status exchange literature.

  1. Grain engineering: How nanoscale inhomogeneities can control charge collection in solar cells

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    West, Bradley M.; Stuckelberger, Michael; Guthrey, Harvey

    Statistical and correlative analysis are increasingly important in the design and study of new materials, from semiconductors to metals. Non-destructive measurement techniques, with high spatial resolution, capable of correlating composition and/or structure with device properties, are few and far between. For the case of polycrystalline and inhomogeneous materials, the added challenge is that nanoscale resolution is in general not compatible with the large sampling areas necessary to have a statistical representation of the specimen under study. For the study of grain cores and grain boundaries in polycrystalline solar absorbers this is of particular importance since their dissimilar behavior and variabilitymore » throughout the samples makes it difficult to draw conclusions and ultimately optimize the material. In this study, we present a nanoscale in-operando approach based on the multimodal utilization of synchrotron nano x-ray fluorescence and x-ray beam induced current collected for grain core and grain boundary areas and correlated pixel-by-pixel in fully operational Cu(In(1-x)Gax)Se2Cu(In(1-x)Gax)Se2 solar cells. We observe that low gallium cells have grain boundaries that over perform compared to the grain cores and high gallium cells have boundaries that under perform. These results demonstrate how nanoscale correlative X-ray microscopy can guide research pathways towards grain engineering low cost, high efficiency solar cells.« less

  2. Grain engineering: How nanoscale inhomogeneities can control charge collection in solar cells

    DOE PAGES

    West, Bradley M.; Stuckelberger, Michael; Guthrey, Harvey; ...

    2016-12-16

    We present that statistical and correlative analysis are increasingly important in the design and study of new materials, from semiconductors to metals. Non-destructive measurement techniques, with high spatial resolution, capable of correlating composition and/or structure with device properties, are few and far between. For the case of polycrystalline and inhomogeneous materials, the added challenge is that nanoscale resolution is in general not compatible with the large sampling areas necessary to have a statistical representation of the specimen under study. For the study of grain cores and grain boundaries in polycrystalline solar absorbers this is of particular importance since their dissimilarmore » behavior and variability throughout the samples makes it difficult to draw conclusions and ultimately optimize the material. In this study, we present a nanoscale in-operando approach based on the multimodal utilization of synchrotron nano x-ray fluorescence and x-ray beam induced current collected for grain core and grain boundary areas and correlated pixel-by-pixel in fully operational Cu(In (1-x)Ga x)Se 2 solar cells. We observe that low gallium cells have grain boundaries that over perform compared to the grain cores and high gallium cells have boundaries that under perform. In conclusion, these results demonstrate how nanoscale correlative X-ray microscopy can guide research pathways towards grain engineering low cost, high efficiency solar cells.« less

  3. Boundary-based cellwise OPC for standard-cell layouts

    NASA Astrophysics Data System (ADS)

    Pawlowski, David M.; Deng, Liang; Wong, Martin D. F.

    2007-03-01

    Model based optical proximity correction (OPC) has become necessary at 90nm technology node. Cellwise OPC is an attractive technique to reduce the mask data size as well as the prohibitive runtime of full-chip OPC. As feature dimensions have gotten smaller, the radius of influence for edge features has extended further into neighboring cells such that it is no longer sufficient to perform cellwise OPC independent of neighboring cells, especially for the critical layers. The methodology described in this work accounts for features in neighboring cells and allows a cellwise approach to be applied to cells with a printed gate length of 45nm with the projection that it can also be applied to future technology nodes. OPC-ready cells are generated at library creation (independent of placement) using a boundary-based technique. Each cell has a tractable number of OPC-ready versions due to an intelligent characterization of standard cell layout features. Results are very promising: the average edge placement error (EPE) for all metal1 features in 100 layouts is 0.731nm which is less than 1% of metal1 width; the maximum EPE for poly features reduced to 1/3, compared to cellwise OPC without considering boundaries, creating similar levels of lithographic accuracy while obviating any of the drawbacks inherent in layout specific full-chip model-based OPC.

  4. 22 CFR 1103.160 - Communications.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Communications. 1103.160 Section 1103.160 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES... Communications. (a) The agency shall take appropriate steps to ensure effective communication with applicants...

  5. 22 CFR 1103.160 - Communications.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Communications. 1103.160 Section 1103.160 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES... Communications. (a) The agency shall take appropriate steps to ensure effective communication with applicants...

  6. 22 CFR 1103.160 - Communications.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Communications. 1103.160 Section 1103.160 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES... Communications. (a) The agency shall take appropriate steps to ensure effective communication with applicants...

  7. Numerical study of compressible magnetoconvection with an open transitional boundary

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hanami, H.; Tajima, T.

    1990-08-01

    We study by computer simulation nonlinear evolution of magnetoconvection in a system with a dynamical open boundary between the convection region and corona of the sun. We study a model in which the fluid is subject to the vertical gravitation, magnetohydrodynamics (MHD), and high stratification, through an MHD code with the MacCormack-Donner cell hybrid scheme in order to well represent convective phenomena. Initially the vertical fluid flux penetrates from the convectively unstable zone at the bottom into the upper diffuse atmosphere. As the instability develops, the magnetic fields are twisted by the convection motion and the folding magnetic fields ismore » observed. When the magnetic pressure is comparable to the thermal pressure in the upper layer of convective zone, strong flux expulsion from the convective cell interior toward the cell boundary appears. Under appropriate conditions our simulation exhibits no shock formation incurred by the fluid convected to the photosphere, in contrast to earlier works with box boundaries. The magnetic field patterns observed are those of concentrated magnetic flux tubes, accumulation of dynamo flux near the bottom boundary, pinched flux near the downdraft region, and the surface movement of magnetic flux toward the downdraft region. Many of these computationally observed features are reminiscent of solar observations of the fluid and magnetic structures of their motions.« less

  8. Graphene quantum dot incorporated perovskite films: passivating grain boundaries and facilitating electron extraction.

    PubMed

    Fang, Xiang; Ding, Jianning; Yuan, Ningyi; Sun, Peng; Lv, Minghang; Ding, Guqiao; Zhu, Chong

    2017-02-22

    Organic-inorganic halide perovskites have emerged as attractive materials for use in photovoltaic cells. Owing to the existence of dangling bonds at the grain boundaries between perovskite crystals, minimizing the charge recombination at the surface or grain boundaries by passivating these trap states has been identified to be one of the most important strategies for further optimization of device performance. Previous reports have mainly focused on surface passivation by inserting special materials such as graphene or fullerene between the electron transfer layer and the perovskite film. Here, we report an enhanced efficiency of mesoscopic perovskite solar cells by using graphene quantum dots (GQDs) to passivate the grain boundaries of CH 3 NH 3 PbI 3 . The highest efficiency (17.62%) is achieved via decoration with 7% GQDs, which is an 8.2% enhancement with respect to a pure perovskite based device. Various analyses including electrochemical impedance spectroscopy, time-resolved photoluminescence decay and open-circuit voltage decay measurements are employed in investigating the mechanism behind the improvement in device performance. The findings reveal two important roles played by GQDs in promoting the performance of perovskite solar cells - that GQDs are conducive to facilitating electron extraction and can effectively passivate the electron traps at the perovskite grain boundaries.

  9. The Observation of the Structure of M23C6/ γ Coherent Interface in the 100Mn13 High Carbon High Manganese Steel

    NASA Astrophysics Data System (ADS)

    Xu, Zhenfeng; Ding, Zhimin; Liang, Bo

    2018-03-01

    The M23C6 carbides precipitate along the austenite grain boundary in the 100Mn13 high carbon high manganese steel after 1323 K (1050 °C) solution treatment and subsequent 748 K (475 °C) aging treatment. The grain boundary M23C6 carbides not only spread along the grain boundary and into the incoherent austenite grain, but also grow slowly into the coherent austenite grain. On the basis of the research with optical microscope, a further investigation for the M23C6/ γ coherent interface was carried out by transmission electron microscope (TEM). The results show that the grain boundary M23C6 carbides have orientation relationships with only one of the adjacent austenite grains in the same planes: (\\bar{1}1\\bar{1})_{{{M}_{ 2 3} {C}_{ 6} }} //(\\bar{1}1\\bar{1})_{γ } , (\\bar{1}11)_{{{M}_{ 2 3} {C}_{ 6} }} //(\\bar{1}11)_{γ } ,[ 1 10]_{{{M}_{ 2 3} {C}_{ 6} }} //[ 1 10]_{γ } . The flat M23C6/ γ coherent interface lies on the low indexed crystal planes {111}. Moreover, in M23C6/ γ coherent interface, there are embossments which stretch into the coherent austenite grain γ. Dislocations distribute in the embossments and coherent interface frontier. According to the experimental observation, the paper suggests that the embossments can promote the M23C6/ γ coherent interface move. Besides, the present work has analyzed chemical composition of experimental material and the crystal structures of austenite and M23C6, which indicates that the transformation can be completed through a little diffusion for C atoms and a simple variant for austenite unit cell.

  10. Optical frequency selective surface design using a GPU accelerated finite element boundary integral method

    NASA Astrophysics Data System (ADS)

    Ashbach, Jason A.

    Periodic metallodielectric frequency selective surface (FSS) designs have historically seen widespread use in the microwave and radio frequency spectra. By scaling the dimensions of an FSS unit cell for use in a nano-fabrication process, these concepts have recently been adapted for use in optical applications as well. While early optical designs have been limited to wellunderstood geometries or optimized pixelated screens, nano-fabrication, lithographic and interconnect technology has progressed to a point where it is possible to fabricate metallic screens of arbitrary geometries featuring curvilinear or even three-dimensional characteristics that are only tens of nanometers wide. In order to design an FSS featuring such characteristics, it is important to have a robust numerical solver that features triangular elements in purely two-dimensional geometries and prismatic or tetrahedral elements in three-dimensional geometries. In this dissertation, a periodic finite element method code has been developed which features prismatic elements whose top and bottom boundaries are truncated by numerical integration of the boundary integral as opposed to an approximate representation found in a perfectly matched layer. However, since no exact solution exists for the calculation of triangular elements in a boundary integral, this process can be time consuming. To address this, these calculations were optimized for parallelization such that they may be done on a graphics processor, which provides a large increase in computational speed. Additionally, a simple geometrical representation using a Bezier surface is presented which provides generality with few variables. With a fast numerical solver coupled with a lowvariable geometric representation, a heuristic optimization algorithm has been used to develop several optical designs such as an absorber, a circular polarization filter, a transparent conductive surface and an enhanced, optical modulator.

  11. Chemokinetic accumulation of human neutrophils on immune complex-coated substrata: analysis at a boundary

    PubMed Central

    1984-01-01

    The locomotory behavior of human blood neutrophil leukocytes was studied at a boundary between two surfaces with different chemokinetic properties. This was achieved by time-lapse cinematography of neutrophils moving on coverslips coated with BSA, then part-coated with immune complexes by adding anti-BSA IgG with a straight-line boundary between the BSA and the immune complexes. Cell locomotion was filmed in microscopic fields bisected by the boundary, and kinetic behavior was assessed by comparing speed (orthokinesis), turning behavior (klinokinesis), and the rate of diffusion of the cells on each side of the boundary, using a recently described mathematical analysis of kinesis. In the absence of serum or complement, the proportion of motile cells and their speed and rate of diffusion were greater on BSA than on antiBSA, but there was no consistent difference in turning behavior between cells on the two surfaces. The immune complexes were therefore negatively chemokinetic in comparison with BSA, and this resulted from a negative orthokinesis with little or no contribution from klinokinesis. As would be predicted theoretically, this resulted in gradual accumulation of cells on the immune complexes even in the absence of a chemotactic factor. In further studies, a parallel plate flow chamber was used to show that, under conditions of flow, neutrophils accumulated much more rapidly on a surface coated with BSA- anti-BSA than on BSA alone. Moreover, neutrophils on immune complex- coated surfaces lost their ability to form rosettes with IgG-coated erythrocytes. This suggests that neutrophils on immune complex-coated surfaces redistribute their Fc receptors (RFc gamma) to the under surface, and that the lowered speed of locomotion is due to tethering of neutrophils by substratum-bound IgG-Fc. PMID:6490719

  12. Requirements for high-efficiency solar cells

    NASA Technical Reports Server (NTRS)

    Sah, C. T.

    1986-01-01

    Minimum recombination and low injection level are essential for high efficiency. Twenty percent AM1 efficiency requires a dark recombination current density of 2 x 10 to the minus 13th power A/sq cm and a recombination center density of less than 10 to the 10th power /cu cm. Recombination mechanisms at thirteen locations in a conventional single crystalline silicon cell design are reviewed. Three additional recombination locations are described at grain boundaries in polycrystalline cells. Material perfection and fabrication process optimization requirements for high efficiency are outlined. Innovative device designs to reduce recombination in the bulk and interfaces of single crystalline cells and in the grain boundary of polycrystalline cells are reviewed.

  13. An EBIC study of HEM polycrystalline silicon

    NASA Technical Reports Server (NTRS)

    Koch, T.; Ast, D.

    1982-01-01

    Low-cost silicon for solar cells grown by the heat exchanger method (HEM) was studied in the electron beam induced current (EBIC) mode of a scanning electron microscope (SEM). Comparisons were made between the defects observed optically and the recombination centers visible in EBIC. Much of the HEM material was single crystalline, but structural defects were found from areas near the corners of the grown material. Most of these defects consisted of linear twin boundaries and grain boundaries. The electrical activity of these boundaries was dependent on symmetry of the boundaries. Symmetric twin boundaries did not exhibit recombination activity while unsymmetric twin boundaries were electrically active.

  14. The Cretaceous-Paleogene boundary unit in the Gulf of Mexico: Large-scale oceanic basin response to the Chicxulub impact

    NASA Astrophysics Data System (ADS)

    Sanford, J. C.; Gulick, S. P.; Snedden, J.

    2013-12-01

    The prevailing theory for the Cretaceous-Paleogene (K-Pg) extinction event cites the Chicxulub asteroid impact on the Yucatán Peninsula as the catalyst for the global climatologic and ecologic crisis. This theory has been corroborated by a multitude of K-Pg boundary deposits observed globally in both boreholes and outcrops. The change in character of these deposits with proximity to the crater, from a millimeter-scale clay layer to a hectometer-scale carbonate sequence, supports a causal link between the boundary unit and the asteroid impact. Due to its passive marine setting and proximity to the Chicxulub crater, the Gulf of Mexico is the premier locale in which to study the near-field geologic effect of a massive bolide impact. Until recently, investigation of the K-Pg boundary deposit within the Gulf has been largely confined to outcrops and boreholes on the periphery of the basin due to the difficulty of observation of the boundary unit in the deep water. However, hydrocarbon exploration in the past decade has yielded significant borehole and seismic data that can be used to better understand the deep-water response to the impact and to gain a comprehensive regional understanding impact-related processes in the Gulf. Based on roughly 100 offshore and 300 onshore Cretaceous well penetrations, the K-Pg boundary is interpreted to range from a strictly erosional surface in shallow-water and coastal regimes to a mass transport deposit up to ~400 meters thick. Depth-converted seismic data throughout the Gulf corroborate such thicknesses and reveal that the deposit is virtually ubiquitous throughout the deep water. For the first time, the K-Pg boundary deposit has been tied from the central Gulf to the Chicxulub crater, further establishing a causative link between the two. Biostratigraphic data in wells confirm the age of the deposit and document the presence of the 'K-Pg boundary cocktail.' Seismic data reveals areas of extensive debris flows and slump deposits on the lower slope of the Florida Platform, providing further evidence of massive sediment redistribution. Log character of the boundary deposit varies significantly, suggesting changes in both depositional style (e.g, mass flow deposit, collapsed platform block, etc.) and sediment source (e.g., Yucatán Platform, Florida Platform, Texas coast, etc.). Reinvestigation of the classic K-Pg boundary deposits in DSDP Leg 77 cores reveals evidence of several sequences of debris flows and/or turbidites with possibly unique sediment sources, furthering our understanding of small-scale sedimentary processes of impact-related deposition. Generally, evidence supports the theory that the Chicxulub impact was a source of extreme allogenic energy that drastically altered the Gulf Mexico at the start of the Cenozoic. Seismogenic ground roll and multiple episodes of tsunami, erosion, platform collapse, and remobilized sediment effectively overwhelmed and resurfaced the basin's existing depositional systems within a matter of weeks to months. Such processes resulted in the nearly ubiquitous and often extremely thick K-Pg boundary unit in the Gulf. These results yield insight into the near-field effects of a massive bolide impact in a passive marine setting and the ability of such an impact to instantaneously restructure an oceanic basin and its depositional systems.

  15. SFM-FDTD analysis of triangular-lattice AAA structure: Parametric study of the TEM mode

    NASA Astrophysics Data System (ADS)

    Hamidi, M.; Chemrouk, C.; Belkhir, A.; Kebci, Z.; Ndao, A.; Lamrous, O.; Baida, F. I.

    2014-05-01

    This theoretical work reports a parametric study of enhanced transmission through annular aperture array (AAA) structure arranged in a triangular lattice. The effect of the incidence angle in addition to the inner and outer radii values on the evolution of the transmission spectra is carried out. To this end, a 3D Finite-Difference Time-Domain code based on the Split Field Method (SFM) is used to calculate the spectral response of the structure for any angle of incidence. In order to work through an orthogonal unit cell which presents the advantage to reduce time and space of computation, special periodic boundary conditions are implemented. This study provides a new modeling of AAA structures useful for producing tunable ultra-compact devices.

  16. 40 CFR 257.5 - Disposal standards for owners/operators of non-municipal non-hazardous waste disposal units that...

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... compliance with §§ 257.7 through 257.30 prior to the receipt of CESQG hazardous waste. (b) Definitions.... Waste management unit boundary means a vertical surface located at the hydraulically downgradient limit.../operators of non-municipal non-hazardous waste disposal units that receive Conditionally Exempt Small...

  17. 77 FR 57084 - National Pollutant Discharge Elimination System (NPDES): Draft General Permit for Point Source...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-17

    ..., including to conveyances to Waters of the United States, including interstate waters that flow across or... Treatment Systems to Waters of the United States, Including to Conveyances to Waters of the United States, Including Interstate Waters That Flow Across or Form Part of the Boundary of Illinois and in All Areas of...

  18. The Symbolic Boundary of Sports: Middle School Athletic Culture and Mexican Immigrant Girls

    ERIC Educational Resources Information Center

    Meador, Elizabeth

    2012-01-01

    In this article the author presents an analysis of the hidden curriculum of school sports in mediating the achievement of Mexican immigrant girls in middle schools in the southwestern United States. Using Bourdieu's theory of taste, the author shows how symbolic boundaries expressed by students and teachers legitimize cultural practices that…

  19. Across Racial/Ethnic Boundaries: Investigating Intimate Violence within a National Sample

    ERIC Educational Resources Information Center

    Carbone-Lopez, Kristin

    2013-01-01

    The number of interracial relationships in the United States continues to increase. The fact is, though, that race remains a significant influence in the lives of individuals and in their relationships. Although there is evidence that relationships that cross racial/ethnic boundaries may be at greater risk for conflict and dissolution, there have…

  20. 49 CFR Appendix C to Part 241 - Geographical Boundaries of FRA's Regions and Addresses of FRA's Regional Headquarters

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 49 Transportation 4 2014-10-01 2014-10-01 false Geographical Boundaries of FRA's Regions and Addresses of FRA's Regional Headquarters C Appendix C to Part 241 Transportation Other Regulations Relating... STATES LOCATIONAL REQUIREMENT FOR DISPATCHING OF UNITED STATES RAIL OPERATIONS Pt. 241, App. C Appendix C...

  1. 49 CFR Appendix C to Part 241 - Geographical Boundaries of FRA's Regions and Addresses of FRA's Regional Headquarters

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 49 Transportation 4 2013-10-01 2013-10-01 false Geographical Boundaries of FRA's Regions and Addresses of FRA's Regional Headquarters C Appendix C to Part 241 Transportation Other Regulations Relating... STATES LOCATIONAL REQUIREMENT FOR DISPATCHING OF UNITED STATES RAIL OPERATIONS Pt. 241, App. C Appendix C...

  2. 49 CFR Appendix C to Part 241 - Geographical Boundaries of FRA's Regions and Addresses of FRA's Regional Headquarters

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 49 Transportation 4 2010-10-01 2010-10-01 false Geographical Boundaries of FRA's Regions and Addresses of FRA's Regional Headquarters C Appendix C to Part 241 Transportation Other Regulations Relating... STATES LOCATIONAL REQUIREMENT FOR DISPATCHING OF UNITED STATES RAIL OPERATIONS Pt. 241, App. C Appendix C...

  3. Three-dimensional low Reynolds number flows with a free surface

    NASA Technical Reports Server (NTRS)

    Degani, D.; Gutfinger, C.

    1977-01-01

    The two-dimensional leveling problem (Degani, Gutfinger, 1976) is extended to three dimensions in the case where the flow Re number is very low and attention is paid to the free surface boundary condition with surface tension effects included. The no-slip boundary condition on the wall is observed. The numerical solution falls back on the Marker and Cell (MAC) method (Harlow and Welch, 1965) with the computation region divided into a finite number of stationary rectangular cells (or boxes in the 3-D case) and fluid flow traverses the cells (or boxes).

  4. Localization switching of a large object in a crowded cavity: A rigid/soft object prefers surface/inner positioning.

    PubMed

    Shew, Chwen-Yang; Oda, Soutaro; Yoshikawa, Kenichi

    2017-11-28

    For living cells in the real world, a large organelle is commonly positioned in the inner region away from membranes, such as the nucleus of eukaryotic cells, the nucleolus of nuclei, mitochondria, chloroplast, Golgi body, etc. It contradicts the expectation by the current depletion-force theory in that the larger particle should be excluded from the inner cell space onto cell boundaries in a crowding media. Here we simply model a sizable organelle as a soft-boundary large particle allowing crowders, which are smaller hard spheres in the model, to intrude across its boundary. The results of Monte Carlo simulation indicate that the preferential location of the larger particle switches from the periphery into the inner region of the cavity by increasing its softness. An integral equation theory is further developed to account for the structural features of the model, and the theoretical predictions are found consistent with our simulation results.

  5. Localization switching of a large object in a crowded cavity: A rigid/soft object prefers surface/inner positioning

    NASA Astrophysics Data System (ADS)

    Shew, Chwen-Yang; Oda, Soutaro; Yoshikawa, Kenichi

    2017-11-01

    For living cells in the real world, a large organelle is commonly positioned in the inner region away from membranes, such as the nucleus of eukaryotic cells, the nucleolus of nuclei, mitochondria, chloroplast, Golgi body, etc. It contradicts the expectation by the current depletion-force theory in that the larger particle should be excluded from the inner cell space onto cell boundaries in a crowding media. Here we simply model a sizable organelle as a soft-boundary large particle allowing crowders, which are smaller hard spheres in the model, to intrude across its boundary. The results of Monte Carlo simulation indicate that the preferential location of the larger particle switches from the periphery into the inner region of the cavity by increasing its softness. An integral equation theory is further developed to account for the structural features of the model, and the theoretical predictions are found consistent with our simulation results.

  6. A topological coordinate system for the diamond cubic grid.

    PubMed

    Čomić, Lidija; Nagy, Benedek

    2016-09-01

    Topological coordinate systems are used to address all cells of abstract cell complexes. In this paper, a topological coordinate system for cells in the diamond cubic grid is presented and some of its properties are detailed. Four dependent coordinates are used to address the voxels (triakis truncated tetrahedra), their faces (hexagons and triangles), their edges and the points at their corners. Boundary and co-boundary relations, as well as adjacency relations between the cells, can easily be captured by the coordinate values. Thus, this coordinate system is apt for implementation in various applications, such as visualizations, morphological and topological operations and shape analysis.

  7. A dummy cell immersed boundary method for incompressible turbulence simulations over dirty geometries

    NASA Astrophysics Data System (ADS)

    Onishi, Keiji; Tsubokura, Makoto

    2016-11-01

    A methodology to eliminate the manual work required for correcting the surface imperfections of computer-aided-design (CAD) data, will be proposed. Such a technique is indispensable for CFD analysis of industrial applications involving complex geometries. The CAD geometry is degenerated into cell-oriented values based on Cartesian grid. This enables the parallel pre-processing as well as the ability to handle 'dirty' CAD data that has gaps, overlaps, or sharp edges without necessitating any fixes. An arbitrary boundary representation is used with a dummy-cell technique based on immersed boundary (IB) method. To model the IB, a forcing term is directly imposed at arbitrary ghost cells by linear interpolation of the momentum. The mass conservation is satisfied in the approximate domain that covers fluid region except the wall including cells. Attempts to Satisfy mass conservation in the wall containing cells leads to pressure oscillations near the IB. The consequence of this approximation will be discussed through fundamental study of an LES based channel flow simulation, and high Reynolds number flow around a sphere. And, an analysis comparing our results with wind tunnel experiments of flow around a full-vehicle geometry will also be presented.

  8. Investigating the fluid mechanics behind red blood cell-induced lateral platelet motion

    NASA Astrophysics Data System (ADS)

    Crowl Erickson, Lindsay; Fogelson, Aaron

    2009-11-01

    Platelets play an essential role in blood clotting; they adhere to damaged tissue and release chemicals that activate other platelets. Yet in order to adhere, platelets must first come into contact with the injured vessel wall. Under arterial flow conditions, platelets have an enhanced concentration near blood vessel walls. This non-uniform cell distribution depends on the fluid dynamics of blood as a heterogeneous medium. We use a parallelized lattice Boltzmann-immersed boundary method to solve the flow dynamics of red cells and platelets in a periodic 2D vessel with no-slip boundary conditions. Red cells are treated as biconcave immersed boundary objects with isotropic Skalak membrane tension and an internal viscosity five times that of the surrounding plasma. Using this method we analyze the influence of shear rate, hematocrit, and red cell membrane properties on lateral platelet motion. We find that the effective diffusion of platelets is significantly lower near the vessel wall compared to the center of the vessel. Insight gained from this work could lead to significant improvements to current models for platelet adhesion where the presence of red blood cells is neglected due to computational intensity.

  9. Reduction of the discretization stencil of direct forcing immersed boundary methods on rectangular cells: The ghost node shifting method

    NASA Astrophysics Data System (ADS)

    Picot, Joris; Glockner, Stéphane

    2018-07-01

    We present an analytical study of discretization stencils for the Poisson problem and the incompressible Navier-Stokes problem when used with some direct forcing immersed boundary methods. This study uses, but is not limited to, second-order discretization and Ghost-Cell Finite-Difference methods. We show that the stencil size increases with the aspect ratio of rectangular cells, which is undesirable as it breaks assumptions of some linear system solvers. To circumvent this drawback, a modification of the Ghost-Cell Finite-Difference methods is proposed to reduce the size of the discretization stencil to the one observed for square cells, i.e. with an aspect ratio equal to one. Numerical results validate this proposed method in terms of accuracy and convergence, for the Poisson problem and both Dirichlet and Neumann boundary conditions. An improvement on error levels is also observed. In addition, we show that the application of the chosen Ghost-Cell Finite-Difference methods to the Navier-Stokes problem, discretized by a pressure-correction method, requires an additional interpolation step. This extra step is implemented and validated through well known test cases of the Navier-Stokes equations.

  10. Geologic and Mineral Resource Map of Afghanistan

    USGS Publications Warehouse

    Doebrich, Jeff L.; Wahl, Ronald R.; With Contributions by Ludington, Stephen D.; Chirico, Peter G.; Wandrey, Craig J.; Bohannon, Robert G.; Orris, Greta J.; Bliss, James D.; Wasy, Abdul; Younusi, Mohammad O.

    2006-01-01

    Data Summary The geologic and mineral resource information shown on this map is derived from digitization of the original data from Abdullah and Chmyriov (1977) and Abdullah and others (1977). The U.S. Geological Survey (USGS) has made no attempt to modify original geologic map-unit boundaries and faults as presented in Abdullah and Chmyriov (1977); however, modifications to map-unit symbology, and minor modifications to map-unit descriptions, have been made to clarify lithostratigraphy and to modernize terminology. Labeling of map units has not been attempted where they are small or narrow, in order to maintain legibility and to preserve the map's utility in illustrating regional geologic and structural relations. Users are encouraged to refer to the series of USGS/AGS (Afghan Geological Survey) 1:250,000-scale geologic quadrangle maps of Afghanistan that are being released concurrently as open-file reports. The classification of mineral deposit types is based on the authors' interpretation of existing descriptive information (Abdullah and others, 1977; Bowersox and Chamberlin, 1995; Orris and Bliss, 2002) and on limited field investigations by the authors. Deposit-type nomenclature used for nonfuel minerals is modified from published USGS deposit-model classifications, as compiled in Stoeser and Heran (2000). New petroleum localities are based on research of archival data by the authors. The shaded-relief base is derived from Shuttle Radar Topography Mission (SRTM) digital elevation model (DEM) data having 85-meter resolution. Gaps in the original SRTM DEM dataset were filled with data digitized from contours on 1:200,000-scale Soviet General Staff Sheets (1978-1997). The marginal extent of geologic units corresponds to the position of the international boundary as defined by Abdullah and Chmyriov (1977), and the international boundary as shown on this map was acquired from the Afghanistan Information Management Service (AIMS) Web site (http://www.aims.org.af) in September 2005. Non-coincidence of these boundaries is due to differences in the respective data sources and to inexact registration of the geologic data to the DEM base. Province boundaries, province capital locations, and political names were also acquired from the AIMS Web site in September 2005. The AIMS data were originally derived from maps produced by the Afghanistan Geodesy and Cartography Head Office (AGCHO). Version 2 differs from Version 1 in that (1) map units are colored according to the color scheme of the Commission for the Geological Map of the World (CGMW) (http://www.ccgm.org), (2) the minerals database has been updated, and (3) all data presented on the map are also available in GIS format.

  11. DOE Office of Scientific and Technical Information (OSTI.GOV)

    West, Bradley M.; Stuckelberger, Michael; Guthrey, Harvey

    We present that statistical and correlative analysis are increasingly important in the design and study of new materials, from semiconductors to metals. Non-destructive measurement techniques, with high spatial resolution, capable of correlating composition and/or structure with device properties, are few and far between. For the case of polycrystalline and inhomogeneous materials, the added challenge is that nanoscale resolution is in general not compatible with the large sampling areas necessary to have a statistical representation of the specimen under study. For the study of grain cores and grain boundaries in polycrystalline solar absorbers this is of particular importance since their dissimilarmore » behavior and variability throughout the samples makes it difficult to draw conclusions and ultimately optimize the material. In this study, we present a nanoscale in-operando approach based on the multimodal utilization of synchrotron nano x-ray fluorescence and x-ray beam induced current collected for grain core and grain boundary areas and correlated pixel-by-pixel in fully operational Cu(In (1-x)Ga x)Se 2 solar cells. We observe that low gallium cells have grain boundaries that over perform compared to the grain cores and high gallium cells have boundaries that under perform. In conclusion, these results demonstrate how nanoscale correlative X-ray microscopy can guide research pathways towards grain engineering low cost, high efficiency solar cells.« less

  12. A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth

    PubMed Central

    Macklin, Paul

    2011-01-01

    In this paper, we present a ghost cell/level set method for the evolution of interfaces whose normal velocity depend upon the solutions of linear and nonlinear quasi-steady reaction-diffusion equations with curvature-dependent boundary conditions. Our technique includes a ghost cell method that accurately discretizes normal derivative jump boundary conditions without smearing jumps in the tangential derivative; a new iterative method for solving linear and nonlinear quasi-steady reaction-diffusion equations; an adaptive discretization to compute the curvature and normal vectors; and a new discrete approximation to the Heaviside function. We present numerical examples that demonstrate better than 1.5-order convergence for problems where traditional ghost cell methods either fail to converge or attain at best sub-linear accuracy. We apply our techniques to a model of tumor growth in complex, heterogeneous tissues that consists of a nonlinear nutrient equation and a pressure equation with geometry-dependent jump boundary conditions. We simulate the growth of glioblastoma (an aggressive brain tumor) into a large, 1 cm square of brain tissue that includes heterogeneous nutrient delivery and varied biomechanical characteristics (white matter, gray matter, cerebrospinal fluid, and bone), and we observe growth morphologies that are highly dependent upon the variations of the tissue characteristics—an effect observed in real tumor growth. PMID:21331304

  13. 22 CFR 1104.1 - Purpose.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Purpose. 1104.1 Section 1104.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.1 Purpose. (a) The regulations in this part implement...

  14. Placement-aware decomposition of a digital standard cells library for double patterning lithography

    NASA Astrophysics Data System (ADS)

    Wassal, Amr G.; Sharaf, Heba; Hammouda, Sherif

    2012-11-01

    To continue scaling the circuit features down, Double Patterning (DP) technology is needed in 22nm technologies and lower. DP requires decomposing the layout features into two masks for pitch relaxation, such that the spacing between any two features on each mask is greater than the minimum allowed mask spacing. The relaxed pitches of each mask are then processed on two separate exposure steps. In many cases, post-layout decomposition fails to decompose the layout into two masks due to the presence of conflicts. Post-layout decomposition of a standard cells block can result in native conflicts inside the cells (internal conflict), or native conflicts on the boundary between two cells (boundary conflict). Resolving native conflicts requires a redesign and/or multiple iterations for the placement and routing phases to get a clean decomposition. Therefore, DP compliance must be considered in earlier phases, before getting the final placed cell block. The main focus of this paper is generating a library of decomposed standard cells to be used in a DP-aware placer. This library should contain all possible decompositions for each standard cell, i.e., these decompositions consider all possible combinations of boundary conditions. However, the large number of combinations of boundary conditions for each standard cell will significantly increase the processing time and effort required to obtain all possible decompositions. Therefore, an efficient methodology is required to reduce this large number of combinations. In this paper, three different reduction methodologies are proposed to reduce the number of different combinations processed to get the decomposed library. Experimental results show a significant reduction in the number of combinations and decompositions needed for the library processing. To generate and verify the proposed flow and methodologies, a prototype for a placement-aware DP-ready cell-library is developed with an optimized number of cell views.

  15. Marine boundary layer cloud regimes and POC formation in an LES coupled to a bulk aerosol scheme

    NASA Astrophysics Data System (ADS)

    Berner, A. H.; Bretherton, C. S.; Wood, R.; Muhlbauer, A.

    2013-07-01

    A large-eddy simulation (LES) coupled to a new bulk aerosol scheme is used to study long-lived regimes of aerosol-boundary layer cloud-precipitation interaction and the development of pockets of open cells (POCs) in subtropical stratocumulus cloud layers. The aerosol scheme prognoses mass and number concentration of a single log-normal accumulation mode with surface and entrainment sources, evolving subject to processing of activated aerosol and scavenging of dry aerosol by cloud and rain. The LES with the aerosol scheme is applied to a range of steadily-forced simulations idealized from a well-observed POC case. The long-term system evolution is explored with extended two-dimensional simulations of up to 20 days, mostly with diurnally-averaged insolation. One three-dimensional two-day simulation confirms the initial development of the corresponding two-dimensional case. With weak mean subsidence, an initially aerosol-rich mixed layer deepens, the capping stratocumulus cloud slowly thickens and increasingly depletes aerosol via precipitation accretion, then the boundary layer transitions within a few hours into an open-cell regime with scattered precipitating cumuli, in which entrainment is much weaker. The inversion slowly collapses for several days until the cumulus clouds are too shallow to efficiently precipitate. Inversion cloud then reforms and radiatively drives renewed entrainment, allowing the boundary layer to deepen and become more aerosol-rich, until the stratocumulus layer thickens enough to undergo another cycle of open-cell formation. If mean subsidence is stronger, the stratocumulus never thickens enough to initiate drizzle and settles into a steady state. With lower initial aerosol concentrations, this system quickly transitions into open cells, collapses, and redevelops into a different steady state with a shallow, optically thin cloud layer. In these steady states, interstitial scavenging by cloud droplets is the main sink of aerosol number. The system is described in a reduced two-dimensional phase plane with inversion height and boundary-layer average aerosol concentrations as the state variables. Simulations with a full diurnal cycle show similar evolutions, except that open-cell formation is phase-locked into the early morning hours. The same steadily-forced modeling framework is applied to the development and evolution of a POC and the surrounding overcast boundary layer. An initial aerosol perturbation applied to a portion of the model domain leads that portion to transition into open-cell convection, forming a POC. Reduced entrainment in the POC induces a negative feedback between areal fraction covered by the POC and boundary layer depth changes. This stabilizes the system by controlling liquid water path and precipitation sinks of aerosol number in the overcast region, while also preventing boundary-layer collapse within the POC, allowing the POC and overcast to coexist indefinitely in a quasi-steady equilibrium.

  16. A Model for Selection of Eyespots on Butterfly Wings.

    PubMed

    Sekimura, Toshio; Venkataraman, Chandrasekhar; Madzvamuse, Anotida

    2015-01-01

    The development of eyespots on the wing surface of butterflies of the family Nympalidae is one of the most studied examples of biological pattern formation.However, little is known about the mechanism that determines the number and precise locations of eyespots on the wing. Eyespots develop around signaling centers, called foci, that are located equidistant from wing veins along the midline of a wing cell (an area bounded by veins). A fundamental question that remains unsolved is, why a certain wing cell develops an eyespot, while other wing cells do not. We illustrate that the key to understanding focus point selection may be in the venation system of the wing disc. Our main hypothesis is that changes in morphogen concentration along the proximal boundary veins of wing cells govern focus point selection. Based on previous studies, we focus on a spatially two-dimensional reaction-diffusion system model posed in the interior of each wing cell that describes the formation of focus points. Using finite element based numerical simulations, we demonstrate that variation in the proximal boundary condition is sufficient to robustly select whether an eyespot focus point forms in otherwise identical wing cells. We also illustrate that this behavior is robust to small perturbations in the parameters and geometry and moderate levels of noise. Hence, we suggest that an anterior-posterior pattern of morphogen concentration along the proximal vein may be the main determinant of the distribution of focus points on the wing surface. In order to complete our model, we propose a two stage reaction-diffusion system model, in which an one-dimensional surface reaction-diffusion system, posed on the proximal vein, generates the morphogen concentrations that act as non-homogeneous Dirichlet (i.e., fixed) boundary conditions for the two-dimensional reaction-diffusion model posed in the wing cells. The two-stage model appears capable of generating focus point distributions observed in nature. We therefore conclude that changes in the proximal boundary conditions are sufficient to explain the empirically observed distribution of eyespot focus points on the entire wing surface. The model predicts, subject to experimental verification, that the source strength of the activator at the proximal boundary should be lower in wing cells in which focus points form than in those that lack focus points. The model suggests that the number and locations of eyespot foci on the wing disc could be largely controlled by two kinds of gradients along two different directions, that is, the first one is the gradient in spatially varying parameters such as the reaction rate along the anterior-posterior direction on the proximal boundary of the wing cells, and the second one is the gradient in source values of the activator along the veins in the proximal-distal direction of the wing cell.

  17. Analysis of gene expression levels in individual bacterial cells without image segmentation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kwak, In Hae; Son, Minjun; Hagen, Stephen J., E-mail: sjhagen@ufl.edu

    2012-05-11

    Highlights: Black-Right-Pointing-Pointer We present a method for extracting gene expression data from images of bacterial cells. Black-Right-Pointing-Pointer The method does not employ cell segmentation and does not require high magnification. Black-Right-Pointing-Pointer Fluorescence and phase contrast images of the cells are correlated through the physics of phase contrast. Black-Right-Pointing-Pointer We demonstrate the method by characterizing noisy expression of comX in Streptococcus mutans. -- Abstract: Studies of stochasticity in gene expression typically make use of fluorescent protein reporters, which permit the measurement of expression levels within individual cells by fluorescence microscopy. Analysis of such microscopy images is almost invariably based on amore » segmentation algorithm, where the image of a cell or cluster is analyzed mathematically to delineate individual cell boundaries. However segmentation can be ineffective for studying bacterial cells or clusters, especially at lower magnification, where outlines of individual cells are poorly resolved. Here we demonstrate an alternative method for analyzing such images without segmentation. The method employs a comparison between the pixel brightness in phase contrast vs fluorescence microscopy images. By fitting the correlation between phase contrast and fluorescence intensity to a physical model, we obtain well-defined estimates for the different levels of gene expression that are present in the cell or cluster. The method reveals the boundaries of the individual cells, even if the source images lack the resolution to show these boundaries clearly.« less

  18. Experimental investigation of a two-dimensional shock-turbulent boundary layer interaction with bleed

    NASA Technical Reports Server (NTRS)

    Hingst, W. R.; Tanji, F. T.

    1983-01-01

    The two-dimensional interaction of an oblique shock wave with a turbulent boundary layer that included the effect of bleed was examined experimentally using a shock generator mounted across a supersonic wind tunnel The studies were performed at Mach numbers 2.5 and 2.0 and unit Reynolds number of approximately 2.0 x 10 to the 7th/meter. The study includes surface oil flow visualization, wall static pressure distributions and boundary layer pitot pressure profiles. In addition, the variation of the local bleed rates were measured. The results show the effect of the bleed on the boundary layer as well as the effect of the flow conditions on the local bleed rate.

  19. Inland sea as a unit for environmental history: East Asian inland seas from prehistory to future.

    PubMed

    Lindstrom, Kati; Uchiyama, Junzo

    2012-04-01

    The boundaries of landscape policies often coincide with political or economic boundaries, thus creating a situation where a unit of landscape protection or management reflects more its present political status than its historico-geographical situation, its historical function and formation. At the same time, it is evident that no unit can exist independently of the context that has given birth to it and that environmental protection in isolated units cannot be very effective. The present paper will discuss inland sea as a landscape unit from prehistory to modern days and its implications for future landscape planning, using EastAsian inland sea (Japan Sea and East China Sea) rim as an example. Historically an area of active communication, EastAsian inland sea rim has become a politically very sharply divided area. The authors will bring examples to demonstrate how cultural communication on the inland sea level has influenced the formation of several landscape features that are now targets for local or national landscape protection programs, and how a unified view could benefit the future of landscape policies in the whole region.

  20. GPU acceleration of particle-in-cell methods

    NASA Astrophysics Data System (ADS)

    Cowan, Benjamin; Cary, John; Meiser, Dominic

    2015-11-01

    Graphics processing units (GPUs) have become key components in many supercomputing systems, as they can provide more computations relative to their cost and power consumption than conventional processors. However, to take full advantage of this capability, they require a strict programming model which involves single-instruction multiple-data execution as well as significant constraints on memory accesses. To bring the full power of GPUs to bear on plasma physics problems, we must adapt the computational methods to this new programming model. We have developed a GPU implementation of the particle-in-cell (PIC) method, one of the mainstays of plasma physics simulation. This framework is highly general and enables advanced PIC features such as high order particles and absorbing boundary conditions. The main elements of the PIC loop, including field interpolation and particle deposition, are designed to optimize memory access. We describe the performance of these algorithms and discuss some of the methods used. Work supported by DARPA contract W31P4Q-15-C-0061 (SBIR).

  1. 22 CFR 1104.4 - Permit requirements and exceptions.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Permit requirements and exceptions. 1104.4 Section 1104.4 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.4 Permit requirements and exceptions...

  2. 22 CFR 1104.12 - Custody of archaeological resources.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Custody of archaeological resources. 1104.12 Section 1104.12 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.12 Custody of archaeological...

  3. 22 CFR 1104.17 - Confidentiality of archaeological resource information.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Confidentiality of archaeological resource information. 1104.17 Section 1104.17 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.17 Confidentiality...

  4. 22 CFR 1104.4 - Permit requirements and exceptions.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Permit requirements and exceptions. 1104.4 Section 1104.4 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.4 Permit requirements and exceptions...

  5. 22 CFR 1104.17 - Confidentiality of archaeological resource information.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Confidentiality of archaeological resource information. 1104.17 Section 1104.17 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.17 Confidentiality...

  6. 22 CFR 1104.12 - Custody of archaeological resources.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Custody of archaeological resources. 1104.12 Section 1104.12 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.12 Custody of archaeological...

  7. Advance information on the supply of pulpwood in survey unit #1

    Treesearch

    L.F. Eldredge; Southern Forest Survey Staff

    1935-01-01

    This report presents information concerning the quantity of pulpwood in survey unit #1, Florida. The geographic location of this unit which includes twenty-one counties in the northeastern part of the state is shown in Figure 1. The boundary of the Ocala National Forest. The data given in this release are preliminary and are subject to correction and modification when...

  8. 46 CFR 7.150 - Canadian (BC) and United States (AK) Borders to Cape Spencer, AK.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 46 Shipping 1 2013-10-01 2013-10-01 false Canadian (BC) and United States (AK) Borders to Cape Spencer, AK. 7.150 Section 7.150 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY PROCEDURES APPLICABLE TO THE PUBLIC BOUNDARY LINES Alaska § 7.150 Canadian (BC) and United States (AK) Borders to Cape...

  9. 46 CFR 7.150 - Canadian (BC) and United States (AK) Borders to Cape Spencer, AK.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 46 Shipping 1 2010-10-01 2010-10-01 false Canadian (BC) and United States (AK) Borders to Cape Spencer, AK. 7.150 Section 7.150 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY PROCEDURES APPLICABLE TO THE PUBLIC BOUNDARY LINES Alaska § 7.150 Canadian (BC) and United States (AK) Borders to Cape...

  10. 46 CFR 7.150 - Canadian (BC) and United States (AK) Borders to Cape Spencer, AK.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 46 Shipping 1 2014-10-01 2014-10-01 false Canadian (BC) and United States (AK) Borders to Cape Spencer, AK. 7.150 Section 7.150 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY PROCEDURES APPLICABLE TO THE PUBLIC BOUNDARY LINES Alaska § 7.150 Canadian (BC) and United States (AK) Borders to Cape...

  11. 46 CFR 7.150 - Canadian (BC) and United States (AK) Borders to Cape Spencer, AK.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 46 Shipping 1 2011-10-01 2011-10-01 false Canadian (BC) and United States (AK) Borders to Cape Spencer, AK. 7.150 Section 7.150 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY PROCEDURES APPLICABLE TO THE PUBLIC BOUNDARY LINES Alaska § 7.150 Canadian (BC) and United States (AK) Borders to Cape...

  12. 46 CFR 7.150 - Canadian (BC) and United States (AK) Borders to Cape Spencer, AK.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 46 Shipping 1 2012-10-01 2012-10-01 false Canadian (BC) and United States (AK) Borders to Cape Spencer, AK. 7.150 Section 7.150 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY PROCEDURES APPLICABLE TO THE PUBLIC BOUNDARY LINES Alaska § 7.150 Canadian (BC) and United States (AK) Borders to Cape...

  13. Digitally-Enabled Organizational Routines at the Organization-Environment Boundary: Buffering and the Role of Technology

    ERIC Educational Resources Information Center

    Hillison, Derek William

    2009-01-01

    Boundary units of an organization uniquely experience the tension between adaptation to environmental variation and maintaining stable outcomes for the rest of the organization. In our world of just-in-time supply chain systems, lot-sizes of one, lean manufacturing and an increasing focus on services, traditional forms of buffering such as queuing…

  14. Boundary Waters Canoe Area Wilderness - A long history of management guided by science

    Treesearch

    David Cole

    2016-01-01

    The Boundary Waters Canoe Area Wilderness (BWCAW) in northern Minnesota is one of the most iconic and cherished wilderness areas in the United States. One of the original wilderness areas established in 1964, the BWCAW protects a glaciated landscape of about 1,175 lakes, connected by several hundred miles of streams. Located adjacent to Canada's Quetico Provincial...

  15. The Borderlands - A region of physical and cultural diversity: Chapter 2 in United States-Mexican Borderlands: Facing tomorrow's challenges through USGS science

    USGS Publications Warehouse

    Parcher, Jean W.; Papoulias, Diana M.; Woodward, Dennis G.; Durall, Roger A.

    2013-01-01

    The area surrounding the United States–Mexican border is very physically and culturally diverse and cannot be generalized by any single description. To assist in an accurate appraisal and understanding of this remarkable region, the Borderlands team has divided it into eight subareas based on the watershed subareas of the U.S. Geological Survey Border Environmental Health Initiative (http://borderhealth.cr.usgs.gov) (fig. 2–1), the boundaries of which are defined primarily by surface-water drainage basins. The drainage basins directly adjacent to or crossing the international boundary were automatically included in the defined border region, as were those basins that contain unconsolidated aquifers that extend to or cross the international boundary. Also, “protected areas” adjacent to included basins were selectively added to the defined border region. Though some geographic features are entirely within the Borderlands, many features—deserts, mountain ranges, rivers, etc.— extend beyond the region boundaries but are still influential to Borderlands environments (fig. 2–2). In some cases, the authors of the following chapters have made fine adjustments to the Borderlands boundaries, and they have described those alterations where necessary. By describing and studying these subareas individually and comparing them to one another, we can emphasize the physical and cultural diversity that makes the Borderlands such an important geographic area.

  16. Analysis of defect structure in silicon. Characterization of SEMIX material. Silicon sheet growth development for the large area silicon sheet task of the low-cost solar array project

    NASA Technical Reports Server (NTRS)

    Natesh, R.; Stringfellow, G. B.; Virkar, A. V.; Dunn, J.; Guyer, T.

    1983-01-01

    Statistically significant quantitative structural imperfection measurements were made on samples from ubiquitous crystalline process (UCP) Ingot 5848 - 13C. Important correlation was obtained between defect densities, cell efficiency, and diffusion length. Grain boundary substructure displayed a strong influence on the conversion efficiency of solar cells from Semix material. Quantitative microscopy measurements gave statistically significant information compared to other microanalytical techniques. A surface preparation technique to obtain proper contrast of structural defects suitable for quantimet quantitative image analyzer (QTM) analysis was perfected and is used routinely. The relationships between hole mobility and grain boundary density was determined. Mobility was measured using the van der Pauw technique, and grain boundary density was measured using quantitative microscopy technique. Mobility was found to decrease with increasing grain boundary density.

  17. Structure and electronic properties of grain boundaries in earth-abundant photovoltaic absorber Cu2ZnSnSe4.

    PubMed

    Li, Junwen; Mitzi, David B; Shenoy, Vivek B

    2011-11-22

    We have studied the atomic and electronic structure of Cu(2)ZnSnSe(4) and CuInSe(2) grain boundaries using first-principles calculations. We find that the constituent atoms at the grain boundary in Cu(2)ZnSnSe(4) create localized defect states that promote the recombination of photon-excited electron and hole carriers. In distinct contrast, significantly lower density of defect states is found at the grain boundaries in CuInSe(2), which is consistent with the experimental observation that CuInSe(2) solar cells exhibit high conversion efficiency without the need for deliberate passivation. Our investigations suggest that it is essential to effectively remove these defect states in order to improve the conversion efficiency of solar cells with Cu(2)ZnSnSe(4) as photovoltaic absorber materials. © 2011 American Chemical Society

  18. Efficient Boundary Extraction of BSP Solids Based on Clipping Operations.

    PubMed

    Wang, Charlie C L; Manocha, Dinesh

    2013-01-01

    We present an efficient algorithm to extract the manifold surface that approximates the boundary of a solid represented by a Binary Space Partition (BSP) tree. Our polygonization algorithm repeatedly performs clipping operations on volumetric cells that correspond to a spatial convex partition and computes the boundary by traversing the connected cells. We use point-based representations along with finite-precision arithmetic to improve the efficiency and generate the B-rep approximation of a BSP solid. The core of our polygonization method is a novel clipping algorithm that uses a set of logical operations to make it resistant to degeneracies resulting from limited precision of floating-point arithmetic. The overall BSP to B-rep conversion algorithm can accurately generate boundaries with sharp and small features, and is faster than prior methods. At the end of this paper, we use this algorithm for a few geometric processing applications including Boolean operations, model repair, and mesh reconstruction.

  19. Tektite-bearing, deep-water clastic unit at the Cretaceous-Tertiary boundary in northeastern Mexico

    NASA Technical Reports Server (NTRS)

    Smit, J.; Montanari, A.; Swinburne, N. H.; Alvarez, W.; Hildebrand, A. R.; Margolis, S. V.; Claeys, P.; Lowrie, W.; Asaro, F.

    1992-01-01

    The hypothesis of Cretaceous-Tertiary (K-T) boundary impact on Yucatan, Mexico, predicts that nearby sites should show evidence of proximal impact ejecta and disturbance by giant waves. An outcrop along the Arroyo el Mimbral in northeastern Mexico contains a layered clastic unit up to 3 m thick that interrupts a biostratigraphically complete pelagic-marl sequence deposited at more than 400 m water depth. The marls were found to be unsuitable for determining magnetostratigraphy, but foraminiferal biostratigraphy places the clastic unit precisely at the K-T boundary. We interpret this clastic unit as the deposit of a megawave or tsunami produced by an extraterrestrial impact. The clastic unit comprises three main subunits. (1) The basal "spherule bed" contains glass in the form of tektites and microtektites, glass spherules replaced by chlorite-smectite and calcite, and quartz grains showing probable shock features. This bed is interpreted as a channelized deposit of proximal ejecta. (2) A set of lenticular, massive, graded "laminated beds" contains intraclasts and abundant plant debris, and may be the result of megawave backwash that carried coarse debris from shallow parts of the continental margin into deeper water. (3) At the top, several thin "ripple beds" composed of fine sand are separated by clay drapes; they are interpreted as deposits of oscillating currents, perhaps a seiche. An iridium anomaly (921 +/- 23 pg/g) is observed at the top of the ripple beds. Our observations at the Mimbral locality support the hypothesis of a K-T impact on nearby Yucatan.

  20. PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies.

    PubMed

    Jeon, Jouhyun; Arnold, Roland; Singh, Fateh; Teyra, Joan; Braun, Tatjana; Kim, Philip M

    2016-04-01

    The identification of structured units in a protein sequence is an important first step for most biochemical studies. Importantly for this study, the identification of stable structured region is a crucial first step to generate novel synthetic antibodies. While many approaches to find domains or predict structured regions exist, important limitations remain, such as the optimization of domain boundaries and the lack of identification of non-domain structured units. Moreover, no integrated tool exists to find and optimize structural domains within protein sequences. Here, we describe a new tool, PAT ( http://www.kimlab.org/software/pat ) that can efficiently identify both domains (with optimized boundaries) and non-domain putative structured units. PAT automatically analyzes various structural properties, evaluates the folding stability, and reports possible structural domains in a given protein sequence. For reliability evaluation of PAT, we applied PAT to identify antibody target molecules based on the notion that soluble and well-defined protein secondary and tertiary structures are appropriate target molecules for synthetic antibodies. PAT is an efficient and sensitive tool to identify structured units. A performance analysis shows that PAT can characterize structurally well-defined regions in a given sequence and outperforms other efforts to define reliable boundaries of domains. Specially, PAT successfully identifies experimentally confirmed target molecules for antibody generation. PAT also offers the pre-calculated results of 20,210 human proteins to accelerate common queries. PAT can therefore help to investigate large-scale structured domains and improve the success rate for synthetic antibody generation.

  1. The layer boundary effect on multi-layer mesoporous TiO 2 film based dye sensitized solar cells

    DOE PAGES

    Xu, Feng; Zhu, Kai; Zhao, Yixin

    2016-10-10

    Multi-layer mesoporous TiO 2 prepared by screen printing is widely used for fabrication of high-efficiency dye-sensitized solar cells (DSSCs). Here, we compare the three types of ~10 um thick mesoporous TiO 2 films, which were screen printed as 1-, 2- and 4-layers using the same TiO 2 nanocrystal paste. The layer boundary of the multi-layer mesoporous TiO 2 films was observed in the cross-section SEM. The existence of a layer boundary could reduce the photoelectron diffusion length with the increase of layer number. However, the photoelectron diffusion lengths of the Z907 dye sensitized solar cells based on these different layeredmore » mesoporous TiO 2 films are all longer than the film thickness. Consequently, the photovoltaic performance seems to have little dependence on the layer number of the multi-layer TiO 2 based DSSCs.« less

  2. Studying the Global Bifurcation Involving Wada Boundary Metamorphosis by a Method of Generalized Cell Mapping with Sampling-Adaptive Interpolation

    NASA Astrophysics Data System (ADS)

    Liu, Xiao-Ming; Jiang, Jun; Hong, Ling; Tang, Dafeng

    In this paper, a new method of Generalized Cell Mapping with Sampling-Adaptive Interpolation (GCMSAI) is presented in order to enhance the efficiency of the computation of one-step probability transition matrix of the Generalized Cell Mapping method (GCM). Integrations with one mapping step are replaced by sampling-adaptive interpolations of third order. An explicit formula of interpolation error is derived for a sampling-adaptive control to switch on integrations for the accuracy of computations with GCMSAI. By applying the proposed method to a two-dimensional forced damped pendulum system, global bifurcations are investigated with observations of boundary metamorphoses including full to partial and partial to partial as well as the birth of fully Wada boundary. Moreover GCMSAI requires a computational time of one thirtieth up to one fiftieth compared to that of the previous GCM.

  3. The layer boundary effect on multi-layer mesoporous TiO 2 film based dye sensitized solar cells

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Xu, Feng; Zhu, Kai; Zhao, Yixin

    Multi-layer mesoporous TiO 2 prepared by screen printing is widely used for fabrication of high-efficiency dye-sensitized solar cells (DSSCs). Here, we compare the three types of ~10 um thick mesoporous TiO 2 films, which were screen printed as 1-, 2- and 4-layers using the same TiO 2 nanocrystal paste. The layer boundary of the multi-layer mesoporous TiO 2 films was observed in the cross-section SEM. The existence of a layer boundary could reduce the photoelectron diffusion length with the increase of layer number. However, the photoelectron diffusion lengths of the Z907 dye sensitized solar cells based on these different layeredmore » mesoporous TiO 2 films are all longer than the film thickness. Consequently, the photovoltaic performance seems to have little dependence on the layer number of the multi-layer TiO 2 based DSSCs.« less

  4. Surface tension and modeling of cellular intercalation during zebrafish gastrulation.

    PubMed

    Calmelet, Colette; Sepich, Diane

    2010-04-01

    In this paper we discuss a model of zebrafish embryo notochord development based on the effect of surface tension of cells at the boundaries. We study the process of interaction of mesodermal cells at the boundaries due to adhesion and cortical tension, resulting in cellular intercalation. From in vivo experiments, we obtain cell outlines of time-lapse images of cell movements during zebrafish embryo development. Using Cellular Potts Model, we calculate the total surface energy of the system of cells at different time intervals at cell contacts. We analyze the variations of total energy depending on nature of cell contacts. We demonstrate that our model can be viable by calculating the total surface energy value for experimentally observed configurations of cells and showing that in our model these configurations correspond to a decrease in total energy values in both two and three dimensions.

  5. Segmentation and Quantitative Analysis of Apoptosis of Chinese Hamster Ovary Cells from Fluorescence Microscopy Images.

    PubMed

    Du, Yuncheng; Budman, Hector M; Duever, Thomas A

    2017-06-01

    Accurate and fast quantitative analysis of living cells from fluorescence microscopy images is useful for evaluating experimental outcomes and cell culture protocols. An algorithm is developed in this work to automatically segment and distinguish apoptotic cells from normal cells. The algorithm involves three steps consisting of two segmentation steps and a classification step. The segmentation steps are: (i) a coarse segmentation, combining a range filter with a marching square method, is used as a prefiltering step to provide the approximate positions of cells within a two-dimensional matrix used to store cells' images and the count of the number of cells for a given image; and (ii) a fine segmentation step using the Active Contours Without Edges method is applied to the boundaries of cells identified in the coarse segmentation step. Although this basic two-step approach provides accurate edges when the cells in a given image are sparsely distributed, the occurrence of clusters of cells in high cell density samples requires further processing. Hence, a novel algorithm for clusters is developed to identify the edges of cells within clusters and to approximate their morphological features. Based on the segmentation results, a support vector machine classifier that uses three morphological features: the mean value of pixel intensities in the cellular regions, the variance of pixel intensities in the vicinity of cell boundaries, and the lengths of the boundaries, is developed for distinguishing apoptotic cells from normal cells. The algorithm is shown to be efficient in terms of computational time, quantitative analysis, and differentiation accuracy, as compared with the use of the active contours method without the proposed preliminary coarse segmentation step.

  6. Fluid flows created by swimming bacteria drive self-organization in confined suspensions

    PubMed Central

    Lushi, Enkeleida; Wioland, Hugo; Goldstein, Raymond E.

    2014-01-01

    Concentrated suspensions of swimming microorganisms and other forms of active matter are known to display complex, self-organized spatiotemporal patterns on scales that are large compared with those of the individual motile units. Despite intensive experimental and theoretical study, it has remained unclear the extent to which the hydrodynamic flows generated by swimming cells, rather than purely steric interactions between them, drive the self-organization. Here we use the recent discovery of a spiral-vortex state in confined suspensions of Bacillus subtilis to study this issue in detail. Those experiments showed that if the radius of confinement in a thin cylindrical chamber is below a critical value, the suspension will spontaneously form a steady single-vortex state encircled by a counter-rotating cell boundary layer, with spiral cell orientation within the vortex. Left unclear, however, was the flagellar orientation, and hence the cell swimming direction, within the spiral vortex. Here, using a fast simulation method that captures oriented cell–cell and cell–fluid interactions in a minimal model of discrete particle systems, we predict the striking, counterintuitive result that in the presence of collectively generated fluid motion, the cells within the spiral vortex actually swim upstream against those flows. This prediction is then confirmed by the experiments reported here, which include measurements of flagella bundle orientation and cell tracking in the self-organized state. These results highlight the complex interplay between cell orientation and hydrodynamic flows in concentrated suspensions of microorganisms. PMID:24958878

  7. Two types of diffusions at the cathode/electrolyte interface in IT-SOFCs

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Li Zhipeng, E-mail: LI.Zhipeng@nims.go.jp; Mori, Toshiyuki; Auchterlonie, Graeme John

    2011-09-15

    Analytical transmission electron microscopy, in particular with the combination of energy dispersive X-ray spectroscopy (EDX) and electron energy-loss spectroscopy (EELS), has been performed to investigate the microstructure and microchemistry of the interfacial region between the cathode (La{sub 0.6}Sr{sub 0.4}Co{sub 0.8}Fe{sub 0.2}O{sub 3}, LSCF) and the electrolyte (Gd-doped ceria, GDC). Two types of diffusions, mutual diffusion between cathode and electrolyte as well as the diffusion along grain boundaries, have been clarified. These diffusions suggest that the chemical stability of LSCF and GDC are not as good as previously reported. The results are more noteworthy if we take into consideration the factmore » that such interdiffusions occur even during the sintering process of cell preparation. - Graphical Abstract: Two types of diffusions, the mutual diffusion and the diffusion along grain boundaries, occurred at the cathode/electrolyte interface of intermediate temperature solid state fuel cells, during cell preparation. The mutual diffusion is denoted by black arrows and the diffusion along grain boundaries assigned by pink arrows. Highlights: > All the cations in cathode (LSCF) and electrolyte (GDC) can mutually diffuse into each other. > Diffusing elements will segregate at grain boundaries or triple junctions around the cathode/electrolyte interface. > Two types of diffusions, the mutual diffusion and diffusion along grain boundaries, have been clarified thereafter.« less

  8. Effects of Riblets on Skin Friction in High-Speed Turbulent Boundary Layers

    NASA Technical Reports Server (NTRS)

    Duan, Lian; Choudhari, Meelan M.

    2012-01-01

    Direct numerical simulations of spatially developing turbulent boundary layers over riblets are conducted to examine the effects of riblets on skin friction at supersonic speeds. Zero-pressure gradient boundary layers with an adiabatic wall, a Mach number of M1 = 2.5, and a Reynolds number based on momentum thickness of Re = 1720 are considered. Simulations are conducted for boundary-layer flows over a clean surface and symmetric V- groove riblets with nominal spacings of 20 and 40 wall units. The DNS results confirm the few existing experimental observations and show that a drag reduction of approximately 7% is achieved for riblets with proper spacing. The influence of riblets on turbulence statistics is analyzed in detail with an emphasis on identifying the differences, if any, between the drag reduction mechanisms for incompressible and high-speed boundary layers.

  9. Extended Interneuronal Network of the Dentate Gyrus.

    PubMed

    Szabo, Gergely G; Du, Xi; Oijala, Mikko; Varga, Csaba; Parent, Jack M; Soltesz, Ivan

    2017-08-08

    Local interneurons control principal cells within individual brain areas, but anecdotal observations indicate that interneuronal axons sometimes extend beyond strict anatomical boundaries. Here, we use the case of the dentate gyrus (DG) to show that boundary-crossing interneurons with cell bodies in CA3 and CA1 constitute a numerically significant and diverse population that relays patterns of activity generated within the CA regions back to granule cells. These results reveal the existence of a sophisticated retrograde GABAergic circuit that fundamentally extends the canonical interneuronal network. Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.

  10. The Hispanicization of the United States.

    ERIC Educational Resources Information Center

    Nostrand, Richard L.

    Two strikingly contrasting culture groups, Latin Americans and Anglo Americans, overlap in a Borderlands that straddles the international boundary between the United States and Mexico. This overlap began with the Aztec conquest by Cortes which triggered the intermixing and miscegenation between Spaniards and Indians that produced a mestizo people…

  11. 22 CFR 1101.15 - Judicial review.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Judicial review. 1101.15 Section 1101.15 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.15 Judicial review. After having exhausted all administrative remedies set...

  12. 22 CFR 1104.1 - Purpose.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Purpose. 1104.1 Section 1104.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.1 Purpose. (a) The regulations in this part implement provisions of the...

  13. 22 CFR 1104.3 - Prohibited acts.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Prohibited acts. 1104.3 Section 1104.3 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.3 Prohibited acts. (a) No person may excavate, remove, damage...

  14. 22 CFR 1104.10 - Appeals relating to permits.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Appeals relating to permits. 1104.10 Section 1104.10 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.10 Appeals relating to permits. Any affected...

  15. 22 CFR 1104.5 - Application for permits and information collection.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Application for permits and information collection. 1104.5 Section 1104.5 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.5 Application for...

  16. 22 CFR 1104.16 - Other penalties and rewards.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Other penalties and rewards. 1104.16 Section 1104.16 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.16 Other penalties and rewards. (a) Section...

  17. 22 CFR 1104.14 - Assessment of civil penalties.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Assessment of civil penalties. 1104.14 Section 1104.14 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.14 Assessment of civil penalties. (a) The...

  18. 22 CFR 1104.16 - Other penalties and rewards.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Other penalties and rewards. 1104.16 Section 1104.16 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.16 Other penalties and rewards. (a) Section...

  19. 22 CFR 1104.3 - Prohibited acts.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Prohibited acts. 1104.3 Section 1104.3 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.3 Prohibited acts. (a) No person may excavate, remove, damage...

  20. 22 CFR 1101.15 - Judicial review.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Judicial review. 1101.15 Section 1101.15 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.15 Judicial review. After having exhausted all administrative remedies set...

  1. 22 CFR 1104.15 - Civil penalty amounts.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Civil penalty amounts. 1104.15 Section 1104.15 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.15 Civil penalty amounts. (a) Maximum amount of...

  2. 22 CFR 1101.10 - Accounting for disclosures.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Accounting for disclosures. 1101.10 Section 1101.10 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.10 Accounting for disclosures. (a) Each system manager shall...

  3. 22 CFR 1104.9 - Suspension and revocation of permits.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Suspension and revocation of permits. 1104.9 Section 1104.9 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.9 Suspension and revocation of...

  4. 22 CFR 1101.15 - Judicial review.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 22 Foreign Relations 2 2012-04-01 2009-04-01 true Judicial review. 1101.15 Section 1101.15 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.15 Judicial review. After having exhausted all administrative remedies set...

  5. 22 CFR 1104.10 - Appeals relating to permits.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Appeals relating to permits. 1104.10 Section 1104.10 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.10 Appeals relating to permits. Any affected...

  6. 22 CFR 1101.10 - Accounting for disclosures.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 22 Foreign Relations 2 2012-04-01 2009-04-01 true Accounting for disclosures. 1101.10 Section 1101.10 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.10 Accounting for disclosures. (a) Each system manager shall...

  7. 22 CFR 1104.5 - Application for permits and information collection.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Application for permits and information collection. 1104.5 Section 1104.5 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.5 Application for...

  8. BODYFIT-1FE: a computer code for three-dimensional steady-state/transient single-phase rod-bundle thermal-hydraulic analysis. Draft report

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Chen, B.C.J.; Sha, W.T.; Doria, M.L.

    1980-11-01

    The governing equations, i.e., conservation equations for mass, momentum, and energy, are solved as a boundary-value problem in space and an initial-value problem in time. BODYFIT-1FE code uses the technique of boundary-fitted coordinate systems where all the physical boundaries are transformed to be coincident with constant coordinate lines in the transformed space. By using this technique, one can prescribe boundary conditions accurately without interpolation. The transformed governing equations in terms of the boundary-fitted coordinates are then solved by using implicit cell-by-cell procedure with a choice of either central or upwind convective derivatives. It is a true benchmark rod-bundle code withoutmore » invoking any assumptions in the case of laminar flow. However, for turbulent flow, some empiricism must be employed due to the closure problem of turbulence modeling. The detailed velocity and temperature distributions calculated from the code can be used to benchmark and calibrate empirical coefficients employed in subchannel codes and porous-medium analyses.« less

  9. The Markov blankets of life: autonomy, active inference and the free energy principle

    PubMed Central

    Palacios, Ensor; Friston, Karl; Kiverstein, Julian

    2018-01-01

    This work addresses the autonomous organization of biological systems. It does so by considering the boundaries of biological systems, from individual cells to Home sapiens, in terms of the presence of Markov blankets under the active inference scheme—a corollary of the free energy principle. A Markov blanket defines the boundaries of a system in a statistical sense. Here we consider how a collective of Markov blankets can self-assemble into a global system that itself has a Markov blanket; thereby providing an illustration of how autonomous systems can be understood as having layers of nested and self-sustaining boundaries. This allows us to show that: (i) any living system is a Markov blanketed system and (ii) the boundaries of such systems need not be co-extensive with the biophysical boundaries of a living organism. In other words, autonomous systems are hierarchically composed of Markov blankets of Markov blankets—all the way down to individual cells, all the way up to you and me, and all the way out to include elements of the local environment. PMID:29343629

  10. Cell-Averaged discretization for incompressible Navier-Stokes with embedded boundaries and locally refined Cartesian meshes: a high-order finite volume approach

    NASA Astrophysics Data System (ADS)

    Bhalla, Amneet Pal Singh; Johansen, Hans; Graves, Dan; Martin, Dan; Colella, Phillip; Applied Numerical Algorithms Group Team

    2017-11-01

    We present a consistent cell-averaged discretization for incompressible Navier-Stokes equations on complex domains using embedded boundaries. The embedded boundary is allowed to freely cut the locally-refined background Cartesian grid. Implicit-function representation is used for the embedded boundary, which allows us to convert the required geometric moments in the Taylor series expansion (upto arbitrary order) of polynomials into an algebraic problem in lower dimensions. The computed geometric moments are then used to construct stencils for various operators like the Laplacian, divergence, gradient, etc., by solving a least-squares system locally. We also construct the inter-level data-transfer operators like prolongation and restriction for multi grid solvers using the same least-squares system approach. This allows us to retain high-order of accuracy near coarse-fine interface and near embedded boundaries. Canonical problems like Taylor-Green vortex flow and flow past bluff bodies will be presented to demonstrate the proposed method. U.S. Department of Energy, Office of Science, ASCR (Award Number DE-AC02-05CH11231).

  11. Program Code Generator for Cardiac Electrophysiology Simulation with Automatic PDE Boundary Condition Handling

    PubMed Central

    Punzalan, Florencio Rusty; Kunieda, Yoshitoshi; Amano, Akira

    2015-01-01

    Clinical and experimental studies involving human hearts can have certain limitations. Methods such as computer simulations can be an important alternative or supplemental tool. Physiological simulation at the tissue or organ level typically involves the handling of partial differential equations (PDEs). Boundary conditions and distributed parameters, such as those used in pharmacokinetics simulation, add to the complexity of the PDE solution. These factors can tailor PDE solutions and their corresponding program code to specific problems. Boundary condition and parameter changes in the customized code are usually prone to errors and time-consuming. We propose a general approach for handling PDEs and boundary conditions in computational models using a replacement scheme for discretization. This study is an extension of a program generator that we introduced in a previous publication. The program generator can generate code for multi-cell simulations of cardiac electrophysiology. Improvements to the system allow it to handle simultaneous equations in the biological function model as well as implicit PDE numerical schemes. The replacement scheme involves substituting all partial differential terms with numerical solution equations. Once the model and boundary equations are discretized with the numerical solution scheme, instances of the equations are generated to undergo dependency analysis. The result of the dependency analysis is then used to generate the program code. The resulting program code are in Java or C programming language. To validate the automatic handling of boundary conditions in the program code generator, we generated simulation code using the FHN, Luo-Rudy 1, and Hund-Rudy cell models and run cell-to-cell coupling and action potential propagation simulations. One of the simulations is based on a published experiment and simulation results are compared with the experimental data. We conclude that the proposed program code generator can be used to generate code for physiological simulations and provides a tool for studying cardiac electrophysiology. PMID:26356082

  12. Hydrogeology and simulation of ground-water flow in the thick regolith-fractured crystalline rock aquifer system of Indian Creek basin, North Carolina

    USGS Publications Warehouse

    Daniel, Charles C.; Smith, Douglas G.; Eimers, Jo Leslie

    1997-01-01

    The Indian Creek Basin in the southwestern Piedmont of North Carolina is one of five type areas studied as part of the Appalachian Valleys-Piedmont Regional Aquifer-System analysis. Detailed studies of selected type areas were used to quantify ground-water flow characteristics in various conceptual hydrogeologic terranes. The conceptual hydrogeologic terranes are considered representative of ground-water conditions beneath large areas of the three physiographic provinces--Valley and Ridge, Blue Ridge, and Piedmont--that compose the Appalachian Valleys-Piedmont Regional Aquifer-System Analysis area. The Appalachian Valleys-Piedmont Regional Aquifer-System Analysis study area extends over approximately 142,000 square miles in 11 states and the District of Columbia in the Appalachian highlands of the Eastern United States. The Indian Creek type area is typical of ground-water conditions in a single hydrogeologic terrane that underlies perhaps as much as 40 percent of the Piedmont physiographic province. The hydrogeologic terrane of the Indian Creek model area is one of massive and foliated crystalline rocks mantled by thick regolith. The area lies almost entirely within the Inner Piedmont geologic belt. Five hydrogeologic units occupy major portions of the model area, but statistical tests on well yields, specific capacities, and other hydrologic characteristics show that the five hydrogeologic units can be treated as one unit for purposes of modeling ground-water flow. The 146-square-mile Indian Creek model area includes the Indian Creek Basin, which has a surface drainage area of about 69 square miles. The Indian Creek Basin lies in parts of Catawba, Lincoln, and Gaston Counties, North Carolina. The larger model area is based on boundary conditions established for digital simulation of ground-water flow within the smaller Indian Creek Basin. The ground-water flow model of the Indian Creek Basin is based on the U.S. Geological Survey?s modular finite-difference ground-water flow model. The model area is divided into a uniformly spaced grid having 196 rows and 140 columns. The grid spacing is 500 feet. The model grid is oriented to coincide with fabric elements such that rows are oriented parallel to fractures (N. 72? E.) and columns are oriented parallel to foliation (N. 18? W.). The model is discretized vertically into 11 layers; the top layer represents the soil and saprolite of the regolith, and the lower 10 layers represent bedrock. The base of the model is 850 feet below land surface. The top bedrock layer, which is only 25 feet thick, represents the transition zone between saprolite and unweathered bedrock. The assignment of different values of transmissivity to the bedrock according to the topographic setting of model cells and depth results in inherent lateral and vertical anisotropy in the model with zones of high transmissivity in bedrock coinciding with valleys and draws, and zones of low transmissivity in bedrock coinciding with hills and ridges. Lateral anisotropy tends to be most pronounced in the north-northwest to south-southeast direction. Transmissivities decrease nonlineraly with depth. At 850 feet, depending on topographic setting, transmissivities have decreased to about 1 to 4 percent of the value of transmissivity immediately below the regolith-bedrock interface. The model boundaries are, for the most part, specified-flux boundaries that coincide with streams that surround the Indian Creek Basin. The area of active model nodes within the boundaries is about 146 square miles and has about 17,400 active cells. The numerical model is designed not as a predictive tool, but as an interpretive one. The model is designed to help gain insight into flow-system dynamics. Predictive capabilities of the numerical model are limited by the constraints placed on the flow system by specified fluxes and recharge distribution. Results of steady-state analyses that simulate long-term, average annual conditi

  13. Characterization of hydrogeologic units using matrix properties, Yucca Mountain, Nevada

    USGS Publications Warehouse

    Flint, L.E.

    1998-01-01

    Determination of the suitability of Yucca Mountain, in southern Nevada, as a geologic repository for high-level radioactive waste requires the use of numerical flow and transport models. Input for these models includes parameters that describe hydrologic properties and the initial and boundary conditions for all rock materials within the unsaturated zone, as well as some of the upper rocks in the saturated zone. There are 30 hydrogeologic units in the unsaturated zone, and each unit is defined by limited ranges where a discrete volume of rock contains similar hydrogeologic properties. These hydrogeologic units can be easily located in space by using three-dimensional lithostratigraphic models based on relation- ships of the properties with the lithostratigraphy. Physical properties of bulk density, porosity, and particle density; flow properties of saturated hydraulic conductivity and moisture-retention characteristics; and the state variables (variables describing the current state of field conditions) of saturation and water potential were determined for each unit. Units were defined using (1) a data base developed from 4,892 rock samples collected from the coring of 23 shallow and 8 deep boreholes, (2) described lithostratigraphic boundaries and corresponding relations to porosity, (3) recognition of transition zones with pronounced changes in properties over short vertical distances, (4) characterization of the influence of mineral alteration on hydrologic properties such as permeability and moisture-retention characteristics, and (5) a statistical analysis to evaluate where boundaries should be adjusted to minimize the variance within layers. This study describes the correlation of hydrologic properties to porosity, a property that is well related to the lithostratigraphy and depositional and cooling history of the volcanic deposits and can, therefore, be modeled to be distributed laterally. Parameters of the hydrogeologic units developed in this study and the relation of flow properties to porosity that are described can be used to produce detailed and accurate representations of the core-scale hydrologic processes ongoing at Yucca Mountain.

  14. pyLIDEM: A Python-Based Tool to Delineate Coastal Watersheds Using LIDAR Data

    NASA Astrophysics Data System (ADS)

    O'Banion, R.; Alameddine, I.; Gronewold, A.; Reckhow, K.

    2008-12-01

    Accurately identifying the boundary of a watershed is one of the most fundamental and important steps in any hydrological assessment. Representative applications include defining a study area, predicting overland flow, estimating groundwater infiltration, modeling pollutant accumulation and wash-off rates, and evaluating effectiveness of pollutant mitigation measures. The United States Environmental Protection Agency (USEPA) Total Maximum Daily Load (TMDL) program, the most comprehensive water quality management program in the United States (US), is just one example of an application in which accurate and efficient watershed delineation tools play a critical role. For example, many impaired water bodies currently being addressed through the TMDL program drain small coastal watersheds with relatively flat terrain, making watershed delineation particularly challenging. Most of these TMDL studies use 30-meter digital elevation models (DEMs) that rarely capture all of the small elevation changes in coastal watersheds, leading to errors not only in watershed boundary delineation, but in subsequent model predictions (such as watershed runoff flow and pollutant deposition rate predictions) for which watershed attributes are key inputs. Manually delineating these low-relief coastal watersheds through the use of expert knowledge of local water flow patterns, often produces relatively accurate (and often more accurate) watershed boundaries as compared to the boundaries generated by the 30-meter DEMs. Yet, manual delineation is a costly and time consuming procedure that is often not opted for. There is a growing need, therefore, particularly to address the ongoing needs of the TMDL program (and similar environmental management programs), for software tools which can utilize high resolution topography data to more accurately delineate coastal watersheds. Here, we address this need by developing pyLIDEM (python LIdar DEM), a python-based tool which processes bare earth high-resolution Light Detection and Ranging (LIDAR) data, generates fine scale DEMs, and delineates watershed boundaries for a given pour point. Because LIDAR data are typically distributed in large sets of predefined tiles, our tool is capable of combining only the minimum number of bare earth LIDAR tiles required to delineate a watershed of interest. Our tool then processes the LIDAR data into Triangulated Irregular Networks, generates DEMs at user- specified cell sizes, and creates the required files needed to delineate watersheds within ArcGIS. To make pyLIDEM more accessible to the modeling community, we have bundled it within an ArcGIS toolbox, which also allows users to run it directly from an ArcGIS platform. We assess pyLIDEM functionality and accuracy by delineating several impaired small coastal watersheds in the Newport River Estuary in Eastern North Carolina using LIDAR data collected for the North Carolina Flood Mapping Program. We then compare the pyLIDAR-based watershed boundaries with those generated manually and with those generated using the 30-meter DEMs, and find that the pyLIDAR-based boundaries are more accurate than the 30-meter DEMs, and provide a significant time savings compared to manual delineation, particularly in cases where multiple watersheds need to be delineated for a single project.

  15. In Operando Quantification of Three-Dimensional Water Distribution in Nanoporous Carbon-Based Layers in Polymer Electrolyte Membrane Fuel Cells.

    PubMed

    Alrwashdeh, Saad S; Manke, Ingo; Markötter, Henning; Klages, Merle; Göbel, Martin; Haußmann, Jan; Scholta, Joachim; Banhart, John

    2017-06-27

    Understanding the function of nanoporous materials employed in polymer electrolyte membrane fuel cells (PEMFCs) is crucial to improve their performance, durability, and cost efficiency. Up to now, the water distribution in the nm-sized pore structures was hardly accessible during operation of the cells. Here we demonstrate that phase contrast synchrotron X-ray tomography allows for an in operando quantification of the three-dimensional water distribution within the nm-sized pores of carbon-based microporous layers (MPLs). For this purpose, a fuel cell design optimized for tomographic phase contrast measurements was realized. Water in the pores of the entire MPL was detected and quantified. We found an inhomogeneous distribution of the local water saturation and a sharp boundary between mostly filled MPL and almost empty areas. We attribute the latter observation to the two-phase boundary created because condensation takes place predominantly on one side of the boundary. Furthermore, high water saturation in large areas hints at gas diffusion or transport along preferred three-dimensional paths through the material, therefore bypassing most of the MPL volume. Our approach may contribute significantly to future investigations of nanoporous fuel cell materials under realistic operating conditions.

  16. Self-organization of vertebrate mesoderm based on simple boundary conditions.

    PubMed

    Green, Jeremy B A; Dominguez, Isabel; Davidson, Lance A

    2004-11-01

    Embryonic development requires cell movements whose coordination is robust and reproducible. A dramatic example is the primary body axis of vertebrates: despite perturbation, cells in prospective axial tissue coordinate their movements to make an elongated body axis. The spatial cues coordinating these movements are not known. We show here that cells deprived of preexisting spatial cues by physical dissociation and reaggregation nonetheless organize themselves into an axis. Activin-induced cells that are reaggregated into a flat disc initially round up into a ball before elongating perpendicular to the disc. Manipulations of the geometry of the disc and immunofluorescence micrography reveal that the edge of the disc provides a circumferential alignment zone. This finding indicates that physical boundaries provide alignment cues and that circumferential "hoop stress" drives the axial extrusion in a manner resembling late-involuting mesoderm of Xenopus and archenteron elongation in other deuterostome species such as sea urchins. Thus, a population of cells finds its own midline based on the form of the population's boundaries using an edge-aligning mechanism. This process provides a remarkably simple organizing principle that contributes to the reliability of embryonic development as a whole. (c) 2004 Wiley-Liss, Inc.

  17. Hypersonic Laminar Boundary Layer Velocimetry with Discrete Roughness on a Flat Plate

    NASA Technical Reports Server (NTRS)

    Bathel, Brett; Danehy, Paul M.; Inman, Jennifer A.; Watkins, A. Neal; Jones, Stephen B.; Lipford, William E.; Goodman, Kyle Z.; Ivey, Christopher B.; Goyne, Christopher P.

    2010-01-01

    Laminar boundary layer velocity measurements are made on a 10-degree half-angle wedge in a Mach 10 flow. Two types of discrete boundary layer trips were used to perturb the boundary layer gas. The first was a 2-mm tall, 4-mm diameter cylindrical trip. The second was a scaled version of the Orbiter Boundary Layer Transition (BLT) Detailed Test Objective (DTO) trip. Both 1-mm and 2.5-mm tall BLT DTO trips were tested. Additionally, side-view and plan-view axial boundary layer velocity measurements were made in the absence of these tripping devices. The free-stream unit Reynolds numbers tested for the cylindrical trips were 1.7x10(exp 6)/m and 3.3x10(exp 6)/m. The free-stream unit Reynolds number tested for the BLT DTO trips was 1.7x10(exp 6)/m. The angle of attack was kept at approximately 5-degrees for most of the tests resulting in a Mach number of approximately 8.3. These combinations of unit Reynolds numbers and angle of attack resulted in laminar flowfields. To study the precision of the measurement technique, the angle of attack was varied during one run. Nitric-oxide (NO) molecular tagging velocimetry (MTV) was used to obtain averaged axial velocity values and associated uncertainties. These uncertainties are as low as 20 m/s. An interline, progressive scan CCD camera was used to obtain separate images of the initial reference and shifted NO molecules that had been tagged by the laser. The CCD configuration allowed for sub-microsecond sequential acquisition of both images. The maximum planar spatial resolution achieved for the side-view velocity measurements was 0.07-mm in the wall-normal direction by 1.45-mm in the streamwise direction with a spatial depth of 0.5-mm. For the plan-view measurements, the maximum planar spatial resolution in the spanwise and streamwise directions was 0.69-mm by 1.28-mm, respectively, with a spatial depth of 0.5-mm. Temperature sensitive paint (TSP) measurements are provided to compliment the velocity data and to provide further insight into the behavior of the boundary layers. The experiments were performed at the NASA Langley Research Center 31-Inch Mach 10 Air tunnel.

  18. Numerical study of large-eddy breakup and its effect on the drag characteristics of boundary layers

    NASA Technical Reports Server (NTRS)

    Kinney, R. B.; Taslim, M. E.; Hung, S. C.

    1985-01-01

    The break-up of a field of eddies by a flat-plate obstacle embedded in a boundary layer is studied using numerical solutions to the two-dimensional Navier-Stokes equations. The flow is taken to be incompressible and unsteady. The flow field is initiated from rest. A train of eddies of predetermined size and strength are swept into the computational domain upstream of the plate. The undisturbed velocity profile is given by the Blasius solution. The disturbance vorticity generated at the plate and wall, plus that introduced with the eddies, mix with the background vorticity and is transported throughout the entire flow. All quantities are scaled by the plate length, the unidsturbed free-stream velocity, and the fluid kinematic viscosity. The Reynolds number is 1000, the Blasius boundary layer thickness is 2.0, and the plate is positioned a distance of 1.0 above the wall. The computational domain is four units high and sixteen units long.

  19. High risk of tsunami in the northern Caribbean

    NASA Astrophysics Data System (ADS)

    Grindlay, Nancy R.; Hearne, Meghan; Mann, Paul

    The magnitude Mw = 9.3 Sumatra earthquake of 26 December 2004 claimed the lives of an estimated 300,000 people living in coastal areas of seven different countries around the Indian Ocean. This event raised the question of whether similar far-traveled tsunamis generated by plate boundary faulting could affect the estimated 150 million people living in coastal areas of the United States, including Alaska, Hawaii, Puerto Rico, and the U.S. Virgin Islands.Aside from the Pacific plate margin of North America, the North America-Caribbean plate boundary is the closest (˜2000 km) active plate boundary to coastal areas in the Gulf of Mexico and the U.S. Atlantic seaboard. Researchers also have proposed that other possible tsunami-generating sources that could affect coastal areas of the United States include slumping of the shelf margin along the Virginia-North Carolina margin [Driscoll et al., 2000] and slumping of volcanic edifices in the Canary Islands [Ward and Day, 2001].

  20. Direct imaging of Cl- and Cu-induced short-circuit efficiency changes in CdTe solar cells

    DOE PAGES

    Poplawsky, Jonathan D.; Parish, Chad M.; Leonard, Donovan N.; ...

    2014-05-30

    To achieve high-efficiency polycrystalline CdTe-based thin-film solar cells, the CdTe absorbers must go through a post-deposition CdCl 2 heat treatment followed by a Cu diffusion step. To better understand the roles of each treatment with regard to improving grains, grain boundaries, and interfaces, CdTe solar cells with and without Cu diffusion and CdCl 2 heat treatments are investigated using cross-sectional electron beam induced current, electron backscatter diffraction, and scanning transmission electron microscope techniques. The evolution of the cross-sectional carrier collection profile due to these treatments that cause an increase in short-circuit current and higher open-circuit voltage are identified. Additionally, anmore » increased carrier collection in grain boundaries after either/both of these treatments is revealed. The increased current at the grain boundaries is shown to be due to the presence of a space charge region with an intrinsic carrier collection profile width of ≈350 nm. Scanning transmission electron microscope electron-energy loss spectroscopy shows a decreased Te and increased Cl concentration in grain boundaries after treatment, which causes the inversion. Furthermore, each treatment improves the overall carrier collection efficiency of the cell separately, and, therefore, the benefits realized by each treatment are shown to be independent of each other.« less

  1. Nonlinear analysis of a model of vascular tumour growth and treatment

    NASA Astrophysics Data System (ADS)

    Tao, Youshan; Yoshida, Norio; Guo, Qian

    2004-05-01

    We consider a mathematical model describing the evolution of a vascular tumour in response to traditional chemotherapy. The model is a free boundary problem for a system of partial differential equations governing intratumoural drug concentration, cancer cell density and blood vessel density. Tumour cells consist of two types of competitive cells that have different proliferation rates and different sensitivities to drugs. The balance between cell proliferation and death generates a velocity field that drives tumour cell movement. The tumour surface is a moving boundary. The purpose of this paper is to establish a rigorous mathematical analysis of the model for studying the dynamics of intratumoural blood vessels and to explore drug dosage for the successful treatment of a tumour. We also study numerically the competitive effects of the two cell types on tumour growth.

  2. 46 CFR 7.120 - Mexican/United States border to Point Fermin, CA.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... BOUNDARY LINES Pacific Coast § 7.120 Mexican/United States border to Point Fermin, CA. (a) A line drawn... 46 Shipping 1 2014-10-01 2014-10-01 false Mexican/United States border to Point Fermin, CA. 7.120... “5”); thence to Point Loma Light. (b) A line drawn from Mission Bay South Jetty Light “2” to Mission...

  3. 46 CFR 7.120 - Mexican/United States border to Point Fermin, CA.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... BOUNDARY LINES Pacific Coast § 7.120 Mexican/United States border to Point Fermin, CA. (a) A line drawn... 46 Shipping 1 2012-10-01 2012-10-01 false Mexican/United States border to Point Fermin, CA. 7.120... “5”); thence to Point Loma Light. (b) A line drawn from Mission Bay South Jetty Light “2” to Mission...

  4. 46 CFR 7.120 - Mexican/United States border to Point Fermin, CA.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... BOUNDARY LINES Pacific Coast § 7.120 Mexican/United States border to Point Fermin, CA. (a) A line drawn... 46 Shipping 1 2010-10-01 2010-10-01 false Mexican/United States border to Point Fermin, CA. 7.120... “5”); thence to Point Loma Light. (b) A line drawn from Mission Bay South Jetty Light “2” to Mission...

  5. 46 CFR 7.120 - Mexican/United States border to Point Fermin, CA.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... BOUNDARY LINES Pacific Coast § 7.120 Mexican/United States border to Point Fermin, CA. (a) A line drawn... 46 Shipping 1 2013-10-01 2013-10-01 false Mexican/United States border to Point Fermin, CA. 7.120... “5”); thence to Point Loma Light. (b) A line drawn from Mission Bay South Jetty Light “2” to Mission...

  6. 46 CFR 7.120 - Mexican/United States border to Point Fermin, CA.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... BOUNDARY LINES Pacific Coast § 7.120 Mexican/United States border to Point Fermin, CA. (a) A line drawn... 46 Shipping 1 2011-10-01 2011-10-01 false Mexican/United States border to Point Fermin, CA. 7.120... “5”); thence to Point Loma Light. (b) A line drawn from Mission Bay South Jetty Light “2” to Mission...

  7. 75 FR 33851 - Florida Power & Light Company; Turkey Point, Units 6 and 7; Combined License Application, Notice...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-15

    ... Company; Turkey Point, Units 6 and 7; Combined License Application, Notice of Intent To Prepare an... application for a combined license (COL) to build Units 6 and 7 at its Turkey Point site, located in Miami... approximately 4.5 miles from the nearest boundary of the Turkey Point site; the site is approximately 25 miles...

  8. Physics of grain boundaries in polycrystalline photovoltaic semiconductors

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Yan, Yanfa, E-mail: yanfa.yan@utoledo.edu; Yin, Wan-Jian; Wu, Yelong

    2015-03-21

    Thin-film solar cells based on polycrystalline Cu(In,Ga)Se{sub 2} (CIGS) and CdTe photovoltaic semiconductors have reached remarkable laboratory efficiencies. It is surprising that these thin-film polycrystalline solar cells can reach such high efficiencies despite containing a high density of grain boundaries (GBs), which would seem likely to be nonradiative recombination centers for photo-generated carriers. In this paper, we review our atomistic theoretical understanding of the physics of grain boundaries in CIGS and CdTe absorbers. We show that intrinsic GBs with dislocation cores exhibit deep gap states in both CIGS and CdTe. However, in each solar cell device, the GBs can bemore » chemically modified to improve their photovoltaic properties. In CIGS cells, GBs are found to be Cu-rich and contain O impurities. Density-functional theory calculations reveal that such chemical changes within GBs can remove most of the unwanted gap states. In CdTe cells, GBs are found to contain a high concentration of Cl atoms. Cl atoms donate electrons, creating n-type GBs between p-type CdTe grains, forming local p-n-p junctions along GBs. This leads to enhanced current collections. Therefore, chemical modification of GBs allows for high efficiency polycrystalline CIGS and CdTe thin-film solar cells.« less

  9. Novel Micropatterned Cardiac Cell Cultures with Realistic Ventricular Microstructure

    PubMed Central

    Badie, Nima; Bursac, Nenad

    2009-01-01

    Systematic studies of cardiac structure-function relationships to date have been hindered by the intrinsic complexity and variability of in vivo and ex vivo model systems. Thus, we set out to develop a reproducible cell culture system that can accurately replicate the realistic microstructure of native cardiac tissues. Using cell micropatterning techniques, we aligned cultured cardiomyocytes at micro- and macroscopic spatial scales to follow local directions of cardiac fibers in murine ventricular cross sections, as measured by high-resolution diffusion tensor magnetic resonance imaging. To elucidate the roles of ventricular tissue microstructure in macroscopic impulse conduction, we optically mapped membrane potentials in micropatterned cardiac cultures with realistic tissue boundaries and natural cell orientation, cardiac cultures with realistic tissue boundaries but random cell orientation, and standard isotropic monolayers. At 2 Hz pacing, both microscopic changes in cell orientation and ventricular tissue boundaries independently and synergistically increased the spatial dispersion of conduction velocity, but not the action potential duration. The realistic variations in intramural microstructure created unique spatial signatures in micro- and macroscopic impulse propagation within ventricular cross-section cultures. This novel in vitro model system is expected to help bridge the existing gap between experimental structure-function studies in standard cardiac monolayers and intact heart tissues. PMID:19413993

  10. Si-Doping Effects in Cu(In,Ga)Se2 Thin Films and Applications for Simplified Structure High-Efficiency Solar Cells.

    PubMed

    Ishizuka, Shogo; Koida, Takashi; Taguchi, Noboru; Tanaka, Shingo; Fons, Paul; Shibata, Hajime

    2017-09-13

    We found that elemental Si-doped Cu(In,Ga)Se 2 (CIGS) polycrystalline thin films exhibit a distinctive morphology due to the formation of grain boundary layers several tens of nanometers thick. The use of Si-doped CIGS films as the photoabsorber layer in simplified structure buffer-free solar cell devices is found to be effective in enhancing energy conversion efficiency. The grain boundary layers formed in Si-doped CIGS films are expected to play an important role in passivating CIGS grain interfaces and improving carrier transport. The simplified structure solar cells, which nominally consist of only a CIGS photoabsorber layer and a front transparent and a back metal electrode layer, demonstrate practical application level solar cell efficiencies exceeding 15%. To date, the cell efficiencies demonstrated from this type of device have remained relatively low, with values of about 10%. Also, Si-doped CIGS solar cell devices exhibit similar properties to those of CIGS devices fabricated with post deposition alkali halide treatments such as KF or RbF, techniques known to boost CIGS device performance. The results obtained offer a new approach based on a new concept to control grain boundaries in polycrystalline CIGS and other polycrystalline chalcogenide materials for better device performance.

  11. Physics of grain boundaries in polycrystalline photovoltaic semiconductors

    DOE PAGES

    Yan, Yanfa; Yin, Wan-Jian; Wu, Yelong; ...

    2015-03-16

    Thin-film solar cells based on polycrystalline Cu(In,Ga)Se 2 (CIGS) and CdTe photovoltaic semiconductors have reached remarkable laboratory efficiencies. It is surprising that these thin-film polycrystalline solar cells can reach such high efficiencies despite containing a high density of grain boundaries (GBs), which would seem likely to be nonradiative recombination centers for photo-generated carriers. In this study, we review our atomistic theoretical understanding of the physics of grain boundaries in CIGS and CdTe absorbers. We show that intrinsic GBs with dislocation cores exhibit deep gap states in both CIGS and CdTe. Although, in each solar cell device, the GBs can bemore » chemically modified to improve their photovoltaic properties. In CIGS cells, GBs are found to be Cu-rich and contain O impurities. Density-functional theory calculations reveal that such chemical changes within GBs can remove most of the unwanted gap states. In CdTe cells, GBs are found to contain a high concentration of Cl atoms. Cl atoms donate electrons, creating n-type GBs between p-type CdTe grains, forming local p-n-p junctions along GBs. This leads to enhanced current collections. In conclusion, chemical modification of GBs allows for high efficiency polycrystalline CIGS and CdTe thin-film solar cells.« less

  12. Defining boundaries across borders: a case study extending a major land resource area into Mexico

    Treesearch

    Rebecca MacEwen; Roy S. Mann; Philip Heilman; Jeffry J. Stone; Alicia Melgoza Castillo; D. Phillip Guertin

    2005-01-01

    Geographic information science (GIS) and field work were applied to extend Major Land Resource Area (MLRA) 41, Southeastern Arizona Basin and Range, from Arizona and New Mexico into Sonora and Chihuahua, Mexico. The result of this analysis is a tentative boundary line that delineates MLRA 41 for both the United States and Mexico based on elevation, soils, temperature,...

  13. Geologic Basin Boundaries (Basins_GHGRP) GIS Layer

    EPA Pesticide Factsheets

    This is a coverage shapefile of geologic basin boundaries which are used by EPA's Greenhouse Gas Reporting Program. For onshore production, the facility includes all emissions associated with wells owned or operated by a single company in a specific hydrocarbon producing basin (as defined by the geologic provinces published by the American Association of Petroleum Geologists). This layer is limited to the contiguous United States.

  14. 22 CFR 1101.16 - Criminal penalties.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Criminal penalties. 1101.16 Section 1101.16 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.16 Criminal penalties. (a) Under the provisions of the Act, it is a...

  15. 22 CFR 1102.1 - Purpose.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Purpose. 1102.1 Section 1102.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION FREEDOM OF INFORMATION ACT § 1102.1 Purpose. The purpose of this part is to prescribe rules, guidelines and procedures to...

  16. 22 CFR 1102.4 - Fees.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Fees. 1102.4 Section 1102.4 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION FREEDOM OF INFORMATION ACT § 1102.4 Fees. (a) The following shall be applicable with respect to services rendered to...

  17. 22 CFR 1101.9 - Exemptions.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Exemptions. 1101.9 Section 1101.9 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.9 Exemptions. The following are exempt from disclosure under 5 U.S.C. 552a (j...

  18. 22 CFR 1101.1 - Purpose and scope.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Purpose and scope. 1101.1 Section 1101.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.1 Purpose and scope. The purpose of these regulations is to prescribe...

  19. The Territorial Sea: Prospects for the United States.

    ERIC Educational Resources Information Center

    Littleton, Richard K.

    The history of the territorial sea and legislative practices associated with its boundaries are examined in this study. The survey includes information related to: (l) the history of territorial zones (tracing evolutionary development and impacts); (2) United States practices (examining the purpose of authority asserted in the territorial sea);…

  20. 22 CFR 1102.10 - Examination of records.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Examination of records. 1102.10 Section 1102.10 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION FREEDOM OF INFORMATION ACT § 1102.10 Examination of records. When a request to examine records is...

  1. 22 CFR 1104.8 - Terms and conditions of permits.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Terms and conditions of permits. 1104.8 Section 1104.8 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.8 Terms and conditions of permits. (a) In...

  2. 22 CFR 1102.8 - Exemptions.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Exemptions. 1102.8 Section 1102.8 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION FREEDOM OF INFORMATION ACT § 1102.8 Exemptions. (a) 5 U.S.C. 552(b) provides that the requirements of the...

  3. 22 CFR 1101.16 - Criminal penalties.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Criminal penalties. 1101.16 Section 1101.16 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.16 Criminal penalties. (a) Under the provisions of the Act, it is a...

  4. 22 CFR 1101.16 - Criminal penalties.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 22 Foreign Relations 2 2012-04-01 2009-04-01 true Criminal penalties. 1101.16 Section 1101.16 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.16 Criminal penalties. (a) Under the provisions of the Act, it is a...

  5. 22 CFR 1101.9 - Exemptions.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 22 Foreign Relations 2 2012-04-01 2009-04-01 true Exemptions. 1101.9 Section 1101.9 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.9 Exemptions. The following are exempt from disclosure under 5 U.S.C. 552a (j...

  6. 22 CFR 1101.1 - Purpose and scope.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 22 Foreign Relations 2 2012-04-01 2009-04-01 true Purpose and scope. 1101.1 Section 1101.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.1 Purpose and scope. The purpose of these regulations is to prescribe...

  7. 22 CFR 1101.1 - Purpose and scope.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Purpose and scope. 1101.1 Section 1101.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.1 Purpose and scope. The purpose of these regulations is to prescribe...

  8. 22 CFR 1102.1 - Purpose.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 22 Foreign Relations 2 2012-04-01 2009-04-01 true Purpose. 1102.1 Section 1102.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION FREEDOM OF INFORMATION ACT § 1102.1 Purpose. The purpose of this part is to prescribe rules, guidelines and procedures to...

  9. 22 CFR 1102.5 - Categories of requesters for fee purposes.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Categories of requesters for fee purposes. 1102.5 Section 1102.5 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION FREEDOM OF INFORMATION ACT § 1102.5 Categories of requesters for fee...

  10. 22 CFR 1101.9 - Exemptions.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Exemptions. 1101.9 Section 1101.9 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.9 Exemptions. The following are exempt from disclosure under 5 U.S.C. 552a (j...

  11. 22 CFR 1102.1 - Purpose.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 2 2011-04-01 2009-04-01 true Purpose. 1102.1 Section 1102.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION FREEDOM OF INFORMATION ACT § 1102.1 Purpose. The purpose of this part is to prescribe rules, guidelines and procedures to...

  12. 22 CFR 1101.1 - Purpose and scope.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Purpose and scope. 1101.1 Section 1101.1 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PRIVACY ACT OF 1974 § 1101.1 Purpose and scope. The purpose of these regulations is to prescribe...

  13. 22 CFR 1104.8 - Terms and conditions of permits.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 2 2014-04-01 2014-04-01 false Terms and conditions of permits. 1104.8 Section 1104.8 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION PROTECTION OF ARCHAEOLOGICAL RESOURCES § 1104.8 Terms and conditions of permits. (a) In...

  14. 22 CFR 1102.9 - Annual report to Congress.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Annual report to Congress. 1102.9 Section 1102.9 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES... the House of Representatives and President of the Senate for referral to the appropriate committees of...

  15. 76 FR 388 - Southern Nuclear Operating Company; Vogtle Electric Generating Plant, Unit Nos. 1 and 2; Notice...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-04

    ... Design,'' GDC 31, ``Fracture Prevention of Reactor Coolant Pressure Boundary,'' and GDC 32, ``Inspection... Operating Company; Vogtle Electric Generating Plant, Unit Nos. 1 and 2; Notice of Consideration of Issuance of Amendment to Facility Operating License, Proposed No Significant Hazards Consideration...

  16. 22 CFR 1102.8 - Exemptions.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 2 2010-04-01 2010-04-01 true Exemptions. 1102.8 Section 1102.8 Foreign Relations INTERNATIONAL BOUNDARY AND WATER COMMISSION, UNITED STATES AND MEXICO, UNITED STATES SECTION...) Requires that the matters be withheld from the public in such a manner as to leave no discretion on the...

  17. 30 CFR 707.5 - Definitions.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    .... For purposes of this part, only that coal extracted from within the right-of-way, in the case of a... construction. Extraction of coal outside the right-of-way or boundary of the area directly affected by the... or office of the unit which, directly or through another unit of government, finances construction...

  18. Electron energy loss spectroscopy techniques for the study of microbial chromium(VI) reduction

    NASA Technical Reports Server (NTRS)

    Daulton, Tyrone L.; Little, Brenda J.; Lowe, Kristine; Jones-Meehan, Joanne

    2002-01-01

    Electron energy loss spectroscopy (EELS) techniques were used to determine oxidation state, at high spatial resolution, of chromium associated with the metal-reducing bacteria, Shewanella oneidensis, in anaerobic cultures containing Cr(VI)O4(2-). These techniques were applied to fixed cells examined in thin section by conventional transmission electron microscopy (TEM) as well as unfixed, hydrated bacteria examined by environmental cell (EC)-TEM. Two distinct populations of bacteria were observed by TEM: bacteria exhibiting low image contrast and bacteria exhibiting high contrast in their cell membrane (or boundary) structure which was often encrusted with high-contrast precipitates. Measurements by EELS demonstrated that cell boundaries became saturated with low concentrations of Cr and the precipitates encrusting bacterial cells contained a reduced form of Cr in oxidation state + 3 or lower.

  19. Analysis of a diffuse interface model of multispecies tumor growth

    NASA Astrophysics Data System (ADS)

    Dai, Mimi; Feireisl, Eduard; Rocca, Elisabetta; Schimperna, Giulio; Schonbek, Maria E.

    2017-04-01

    We consider a diffuse interface model for tumor growth recently proposed in Chen et al (2014 Int. J. Numer. Methods Biomed. Eng. 30 726-54). In this new approach sharp interfaces are replaced by narrow transition layers arising due to adhesive forces among the cell species. Hence, a continuum thermodynamically consistent model is introduced. The resulting PDE system couples four different types of equations: a Cahn-Hilliard type equation for the tumor cells (which include proliferating and dead cells), a Darcy law for the tissue velocity field, whose divergence may be different from 0 and depend on the other variables, a transport equation for the proliferating (viable) tumor cells, and a quasi-static reaction diffusion equation for the nutrient concentration. We establish existence of weak solutions for the PDE system coupled with suitable initial and boundary conditions. In particular, the proliferation function at the boundary is supposed to be nonnegative on the set where the velocity \\mathbf{u} satisfies \\mathbf{u}\\centerdot ν >0 , where ν is the outer normal to the boundary of the domain.

  20. EnviroAtlas - NHDPlus V2 WBD Snapshot, EnviroAtlas version - Conterminous United States

    EPA Pesticide Factsheets

    This EnviroAtlas dataset is a digital hydrologic unit boundary layer to the Subwatershed (12-digit) 6th level for the conterminous United States, based on the January 6, 2015 NHDPlus V2 WBD (Watershed Boundary Dataset) Snapshot (NHDPlusV21_NationalData_WBDSnapshot_FileGDB_05). The feature class has been edited for use in for EPA ORD's EnviroAtlas. Features in Canada and Mexico have been removed, the boundaries of three 12-digit HUCs have been edited to eliminate gaps and overlaps, the dataset has been dissolved on HUC_12 to create multipart polygons, and information on the percent land area has been added. Hawaii, Puerto Rico, and the U.S. Virgin Islands have been removed, and can be downloaded separately. Other than these modifications, the dataset is the same as the WBD Snapshot included in NHDPlus V2.This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  1. Hydrologic Unit Map -- 1978, state of South Dakota

    USGS Publications Warehouse

    ,

    1978-01-01

    This map and accompanying table show Hydrologic Unites that are basically hydrographic in nature. The Cataloging Unites shown supplant the Cataloging Units previously depicted n the 1974 State Hydrologic Unit Map. The boundaries as shown have been adapted from the 1974 State Hydrologic Unit Map, "The Catalog of Information on Water Data" (1972), "Water Resources Regions and Subregions for the National Assessment of Water and Related Land Resources" by the U.S. Water Resources Council (1970), "River Basin of the United States" by the U.S. Soil Conservation Service (1963, 1970), "River Basin Maps Showing Hydrologic Stations" by the Inter-Agency Committee on Water Resources, Subcommittee on Hydrology (1961), and State planning maps. The Political Subdivision has been adopted from "Counties and County Equivalents of the States if the United States" presented in Federal Information Processing Standards Publication 6-2, issued by the National Bureau of Standards (1973) in which each county or county equivalent is identified by a 2-character State code and a 3-character county code. The Regions, Subregions and Accounting Units are aggregates of the Cataloging Unites. The Regions and Sub regions are currently (1978) used by the U.S> Water Resources Council for comprehensive planning, including the National Assessment, and as a standard geographical framework for more detailed water and related land-resources planning. The Accounting Units are those currently (1978) in use by the U.S. Geological Survey for managing the National Water Data Network. This map was revised to include a boundary realinement between Cataloging Units 10140103 and 10160009.

  2. Synthesis and properties of the compound: LiNi 3/5Cu 2/5VO 4

    NASA Astrophysics Data System (ADS)

    Ram, Moti

    2009-12-01

    The LiNi 3/5Cu 2/5VO 4 is synthesized by solution-based chemical method and its formation has been checked by X-ray diffraction (XRD) study. XRD study shows a tetragonal unit cell structure with lattice parameters of a = 11.6475 (18) Å, c = 2.4855 (18) Å and c/ a = 0.2134 Å. Electrical properties are verified using complex impedance spectroscopy (CIS) technique. Complex impedance analysis reveals following points: (i) the bulk contribution to electrical properties up to 200 °C, (ii) the bulk and grain boundary contribution at T ≥ 225 °C, (iii) the presence of temperature dependent electrical relaxation phenomena in the material. D.c. conductivity study indicates that electrical conduction in the material is a thermally activated process.

  3. STS-73 Flight Day 5

    NASA Technical Reports Server (NTRS)

    1995-01-01

    On this fifth day of the STS-73 sixteen day mission, the crew Cmdr. Kenneth Bowersox, Pilot Kent Rominger, Payload Specialists Albert Sacco and Fred Leslie, and Mission Specialists Kathryn Thornton, Catherine 'Cady' Coleman, and Michael Lopez-Alegria are shown performing several of the spaceborne experiments onboard the United States Microgravity Lab-2 (USML-2). These experiments are downlinked to Mission Control from the Spacelab using the High-Packed Digital Television (HI-PAC) systems onboard the Shuttle. The experiments shown include the Drop Physics Module (DPM) experiment, the Surface Tension Driven Convection Experiment (STDCE), the Protein Crystal Growth (PCG) experiment, and a Hand-Held Diffusion Test Cell experiment. Lopez-Alegria is interviewed in Spanish by two Spanish radio show hosts. Earth views include cloud cover, the Earth's horizon and atmospheric boundary layers, and several oceans.

  4. Regulatory variants of FOXG1 in the context of its topological domain organisation.

    PubMed

    Mehrjouy, Mana M; Fonseca, Ana Carolina S; Ehmke, Nadja; Paskulin, Giorgio; Novelli, Antonio; Benedicenti, Francesco; Mencarelli, Maria Antonietta; Renieri, Alessandra; Busa, Tiffany; Missirian, Chantal; Hansen, Claus; Abe, Kikue Terada; Speck-Martins, Carlos Eduardo; Vianna-Morgante, Angela M; Bak, Mads; Tommerup, Niels

    2018-02-01

    FOXG1 syndrome is caused by FOXG1 intragenic point mutations, or by long-range position effects (LRPE) of intergenic structural variants. However, the size of the FOXG1 regulatory landscape is uncertain, because the associated topologically associating domain (TAD) in fibroblasts is split into two domains in embryonic stem cells (hESC). Indeed, it has been suggested that the pathogenetic mechanism of deletions that remove the stem-cell-specific TAD boundary may be enhancer adoption due to ectopic activity of enhancer(s) located in the distal hESC-TAD. Herein we map three de novo translocation breakpoints to the proximal regulatory domain of FOXG1. The classical FOXG1 syndrome in these and in other translocation patients, and in a patient with an intergenic deletion that removes the hESC-specific TAD boundary, do not support the hypothesised enhancer adoption as a main contributor to the FOXG1 syndrome. Also, virtual 4 C and HiC-interaction data suggest that the hESC-specific TAD boundary may not be critical for FOXG1 regulation in a majority of human cells and tissues, including brain tissues and a neuronal progenitor cell line. Our data support the importance of a critical regulatory region (SRO) proximal to the hESC-specific TAD boundary. We further narrow this critical region by a deletion distal to the hESC-specific boundary, associated with a milder clinical phenotype. The distance from FOXG1 to the SRO ( > 500 kb) highlight a limitation of ENCODE DNase hypersensitivity data for functional prediction of LRPE. Moreover, the SRO has little overlap with a cluster of frequently associating regions (FIREs) located in the proximal hESC-TAD.

  5. Thermal boundary layer profiles in turbulent Rayleigh-Benard convection

    NASA Astrophysics Data System (ADS)

    Tong, Penger; Wang, Yin; He, Xiaozhou

    2015-11-01

    We have studied the mean temperature boundary layer profile T(z) and root-mean-square (rms) temperature profile S(z) in turbulent Rayleigh-Benard convection along the central axis z of a convection cell, which has a thin vertical disk shape with an inner diameter D = 18 cm. The temperature measurements were made at fixed Prandtl numbers Pr = 4.3 and Pr = 7.6 and with the Rayleigh number Ra varied in the range between 1 ×109 and 1 ×1010 . The measured T(z) for different values of Pr and Ra can all be well described by the newly proposed boundary layer model with a parameter c varying from 1 to 2.1. The measured rms temperature profile S(z) is found to be a single-peaked function with the peak position located at z ~= 0 . 8 δ , where δ is the boundary layer thickness. The measured S(z) has two separate scaling lengths. Within the boundary layer, it scales with δ and can be fitted to a power law, S (z) ~(z / δ) α with α ~= 0 . 6 . Outside the boundary layer, it scales with the cell size D and follows a different power law, S (z) ~(z / D) β , with β = - 0 . 42 . This work was supported by the Research Grants Council of Hong Kong SAR.

  6. A numerical method for osmotic water flow and solute diffusion with deformable membrane boundaries in two spatial dimension

    NASA Astrophysics Data System (ADS)

    Yao, Lingxing; Mori, Yoichiro

    2017-12-01

    Osmotic forces and solute diffusion are increasingly seen as playing a fundamental role in cell movement. Here, we present a numerical method that allows for studying the interplay between diffusive, osmotic and mechanical effects. An osmotically active solute obeys a advection-diffusion equation in a region demarcated by a deformable membrane. The interfacial membrane allows transmembrane water flow which is determined by osmotic and mechanical pressure differences across the membrane. The numerical method is based on an immersed boundary method for fluid-structure interaction and a Cartesian grid embedded boundary method for the solute. We demonstrate our numerical algorithm with the test case of an osmotic engine, a recently proposed mechanism for cell propulsion.

  7. Relaxation of sound fields in rooms of diffusely reflecting boundaries and its application in acoustical radiosity simulation.

    PubMed

    Zhang, Honghu

    2006-04-01

    The acoustical radiosity method is a computationally expensive acoustical simulation algorithm that assumes an enclosure with ideal diffuse reflecting boundaries. Miles observed that for such an enclosure, the sound energy decay of every point on the boundaries will gradually converge to exponential manner with a uniform decay rate. Therefore, the ratio of radiosity between every pair of points on the boundaries will converge to a constant, and the radiosity across the boundaries will approach a fixed distribution during the sound decay process, where radiosity is defined as the acoustic power per unit area leaving (or being received by) a point on a boundary. We call this phenomenon the "relaxation" of the sound field. In this paper, we study the relaxation in rooms of different shapes with different boundary absorptions. Criteria based on the relaxation of the sound field are proposed to terminate the costly and unnecessary radiosity computation in the later phase, which can then be replaced by a fast regression step to speed up the acoustical radiosity simulation.

  8. Study of energy vs misorientation for grain boundaries in gold by crystallite rotation method - I. (001) twist boundaries

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Chan, S-W; Balluffi, R.W.

    1985-06-01

    Small gold crystallites ( about50-80 nm dia) were welded to thin film (001) single crystal gol substrates at a series of predetermined (001) twist angles in the range 0.45/sup 0/. A pure (001) twist boundary therefore existed in each welded neck region which could be observed directly by transmission electron microscopy at normal incidence. Upon annealing, the crystallites rotated around (001) when the boundary energy varied with theta. The crystallites rotated into three misorientations corresponding to the special ..sigma..1 and ..sigma..5 misorientations and a symmetry related misorientation at theta = 45/sup 0/. These results indicate the existence of grain boundarymore » dislocation (GBD) related cusps on the boundary energy vs theta curve a ..sigma..1 and ..sigma..5. The rotations occurred conservatively by the motion of screw GBDs which could be observed directly by the transmission microscopy in certain regimes of theta. The results are relevant to recent calculations of the energies of (001) twist boundaries and the applicability of the GBD/structural unit model for grain boundaries.« less

  9. Real-space post-processing correction of thermal drift and piezoelectric actuator nonlinearities in scanning tunneling microscope images.

    PubMed

    Yothers, Mitchell P; Browder, Aaron E; Bumm, Lloyd A

    2017-01-01

    We have developed a real-space method to correct distortion due to thermal drift and piezoelectric actuator nonlinearities on scanning tunneling microscope images using Matlab. The method uses the known structures typically present in high-resolution atomic and molecularly resolved images as an internal standard. Each image feature (atom or molecule) is first identified in the image. The locations of each feature's nearest neighbors are used to measure the local distortion at that location. The local distortion map across the image is simultaneously fit to our distortion model, which includes thermal drift in addition to piezoelectric actuator hysteresis and creep. The image coordinates of the features and image pixels are corrected using an inverse transform from the distortion model. We call this technique the thermal-drift, hysteresis, and creep transform. Performing the correction in real space allows defects, domain boundaries, and step edges to be excluded with a spatial mask. Additional real-space image analyses are now possible with these corrected images. Using graphite(0001) as a model system, we show lattice fitting to the corrected image, averaged unit cell images, and symmetry-averaged unit cell images. Statistical analysis of the distribution of the image features around their best-fit lattice sites measures the aggregate noise in the image, which can be expressed as feature confidence ellipsoids.

  10. Real-space post-processing correction of thermal drift and piezoelectric actuator nonlinearities in scanning tunneling microscope images

    NASA Astrophysics Data System (ADS)

    Yothers, Mitchell P.; Browder, Aaron E.; Bumm, Lloyd A.

    2017-01-01

    We have developed a real-space method to correct distortion due to thermal drift and piezoelectric actuator nonlinearities on scanning tunneling microscope images using Matlab. The method uses the known structures typically present in high-resolution atomic and molecularly resolved images as an internal standard. Each image feature (atom or molecule) is first identified in the image. The locations of each feature's nearest neighbors are used to measure the local distortion at that location. The local distortion map across the image is simultaneously fit to our distortion model, which includes thermal drift in addition to piezoelectric actuator hysteresis and creep. The image coordinates of the features and image pixels are corrected using an inverse transform from the distortion model. We call this technique the thermal-drift, hysteresis, and creep transform. Performing the correction in real space allows defects, domain boundaries, and step edges to be excluded with a spatial mask. Additional real-space image analyses are now possible with these corrected images. Using graphite(0001) as a model system, we show lattice fitting to the corrected image, averaged unit cell images, and symmetry-averaged unit cell images. Statistical analysis of the distribution of the image features around their best-fit lattice sites measures the aggregate noise in the image, which can be expressed as feature confidence ellipsoids.

  11. Softening due to Grain Boundary Cavity Formation and its Competition with Hardening in Helium Implanted Nanocrystalline Tungsten

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Cunningham, W. Streit; Gentile, Jonathan M.; El-Atwani, Osman

    The unique ability of grain boundaries to act as effective sinks for radiation damage plays a significant role in nanocrystalline materials due to their large interfacial area per unit volume. Leveraging this mechanism in the design of tungsten as a plasma-facing material provides a potential pathway for enhancing its radiation tolerance under fusion-relevant conditions. In this study, we explore the impact of defect microstructures on the mechanical behavior of helium ion implanted nanocrystalline tungsten through nanoindentation. Softening was apparent across all implantation temperatures and attributed to bubble/cavity loaded grain boundaries suppressing the activation barrier for the onset of plasticity viamore » grain boundary mediated dislocation nucleation. An increase in fluence placed cavity induced grain boundary softening in competition with hardening from intragranular defect loop damage, thus signaling a new transition in the mechanical behavior of helium implanted nanocrystalline tungsten.« less

  12. Softening due to Grain Boundary Cavity Formation and its Competition with Hardening in Helium Implanted Nanocrystalline Tungsten

    DOE PAGES

    Cunningham, W. Streit; Gentile, Jonathan M.; El-Atwani, Osman; ...

    2018-02-13

    The unique ability of grain boundaries to act as effective sinks for radiation damage plays a significant role in nanocrystalline materials due to their large interfacial area per unit volume. Leveraging this mechanism in the design of tungsten as a plasma-facing material provides a potential pathway for enhancing its radiation tolerance under fusion-relevant conditions. In this study, we explore the impact of defect microstructures on the mechanical behavior of helium ion implanted nanocrystalline tungsten through nanoindentation. Softening was apparent across all implantation temperatures and attributed to bubble/cavity loaded grain boundaries suppressing the activation barrier for the onset of plasticity viamore » grain boundary mediated dislocation nucleation. An increase in fluence placed cavity induced grain boundary softening in competition with hardening from intragranular defect loop damage, thus signaling a new transition in the mechanical behavior of helium implanted nanocrystalline tungsten.« less

  13. Measuring the thermal boundary resistance of van der Waals contacts using an individual carbon nanotube.

    PubMed

    Hirotani, Jun; Ikuta, Tatsuya; Nishiyama, Takashi; Takahashi, Koji

    2013-01-16

    Interfacial thermal transport via van der Waals interaction is quantitatively evaluated using an individual multi-walled carbon nanotube bonded on a platinum hot-film sensor. The thermal boundary resistance per unit contact area was obtained at the interface between the closed end or sidewall of the nanotube and platinum, gold, or a silicon dioxide surface. When taking into consideration the surface roughness, the thermal boundary resistance at the sidewall is found to coincide with that at the closed end. A new finding is that the thermal boundary resistance between a carbon nanotube and a solid surface is independent of the materials within the experimental errors, which is inconsistent with a traditional phonon mismatch model, which shows a clear material dependence of the thermal boundary resistance. Our data indicate the inapplicability of existing phonon models when weak van der Waals forces are dominant at the interfaces.

  14. A Polymer Visualization System with Accurate Heating and Cooling Control and High-Speed Imaging

    PubMed Central

    Wong, Anson; Guo, Yanting; Park, Chul B.; Zhou, Nan Q.

    2015-01-01

    A visualization system to observe crystal and bubble formation in polymers under high temperature and pressure has been developed. Using this system, polymer can be subjected to a programmable thermal treatment to simulate the process in high pressure differential scanning calorimetry (HPDSC). With a high-temperature/high-pressure view-cell unit, this system enables in situ observation of crystal formation in semi-crystalline polymers to complement thermal analyses with HPDSC. The high-speed recording capability of the camera not only allows detailed recording of crystal formation, it also enables in situ capture of plastic foaming processes with a high temporal resolution. To demonstrate the system’s capability, crystal formation and foaming processes of polypropylene/carbon dioxide systems were examined. It was observed that crystals nucleated and grew into spherulites, and they grew at faster rates as temperature decreased. This observation agrees with the crystallinity measurement obtained with the HPDSC. Cell nucleation first occurred at crystals’ boundaries due to CO2 exclusion from crystal growth fronts. Subsequently, cells were nucleated around the existing ones due to tensile stresses generated in the constrained amorphous regions between networks of crystals. PMID:25915031

  15. Color tuning in alert macaque V1 assessed with fMRI and single-unit recording shows a bias toward daylight colors.

    PubMed

    Lafer-Sousa, Rosa; Liu, Yang O; Lafer-Sousa, Luis; Wiest, Michael C; Conway, Bevil R

    2012-05-01

    Colors defined by the two intermediate directions in color space, "orange-cyan" and "lime-magenta," elicit the same spatiotemporal average response from the two cardinal chromatic channels in the lateral geniculate nucleus (LGN). While we found LGN functional magnetic resonance imaging (fMRI) responses to these pairs of colors were statistically indistinguishable, primary visual cortex (V1) fMRI responses were stronger to orange-cyan. Moreover, linear combinations of single-cell responses to cone-isolating stimuli of V1 cone-opponent cells also yielded stronger predicted responses to orange-cyan over lime-magenta, suggesting these neurons underlie the fMRI result. These observations are consistent with the hypothesis that V1 recombines LGN signals into "higher-order" mechanisms tuned to noncardinal color directions. In light of work showing that natural images and daylight samples are biased toward orange-cyan, our findings further suggest that V1 is adapted to daylight. V1, especially double-opponent cells, may function to extract spatial information from color boundaries correlated with scene-structure cues, such as shadows lit by ambient blue sky juxtaposed with surfaces reflecting sunshine. © 2012 Optical Society of America

  16. Between hope and evidence: how community advisors demarcate the boundary between legitimate and illegitimate stem cell treatments.

    PubMed

    Petersen, Alan; Tanner, Claire; Munsie, Megan

    2015-03-01

    Stem cell science provides an exemplary study of the 'management of hope'. On the one hand, raising 'hopes' and expectations is a seen as a necessary aspect of securing investment in promising innovative research. On the other, such hyperbole risks raising hopes to a level that may lead people to undertake undue risks, which may ultimately undermine confidence in medical research. In this context, the 'management of hope' thus involves the negotiation of competing claims of truth about the value and safety of particular treatments and about the trustworthiness of providers. Using Gieryn's concept of boundary-work, this article examines the means by which this work of 'managing hope' is undertaken. Drawing on data collected as part of our study that investigated the perspectives of those who are consulted by patients and their carers about stem cell treatments, we explore how these community advisors – both scientists and clinicians with a stake in stem cell research and representatives from patient advocacy groups – demarcate the boundary between legitimate and illegitimate treatments. In particular, we examine how these actors rhetorically use 'evidence' to achieve this demarcation. We argue that analysing accounts of how advisors respond to patient enquiries about stem cell treatments offers a window for examining the workings of the politics of hope within contemporary bioscience and biomedicine. In conclusion, we emphasize the need to re-conceptualize the boundary between science and non-science so as to allow a better appreciation of the realities of health care in the age of medical travel. © The Author(s) 2014.

  17. Efficient discretization in finite difference method

    NASA Astrophysics Data System (ADS)

    Rozos, Evangelos; Koussis, Antonis; Koutsoyiannis, Demetris

    2015-04-01

    Finite difference method (FDM) is a plausible and simple method for solving partial differential equations. The standard practice is to use an orthogonal discretization to form algebraic approximate formulations of the derivatives of the unknown function and a grid, much like raster maps, to represent the properties of the function domain. For example, for the solution of the groundwater flow equation, a raster map is required for the characterization of the discretization cells (flow cell, no-flow cell, boundary cell, etc.), and two raster maps are required for the hydraulic conductivity and the storage coefficient. Unfortunately, this simple approach to describe the topology comes along with the known disadvantages of the FDM (rough representation of the geometry of the boundaries, wasted computational resources in the unavoidable expansion of the grid refinement in all cells of the same column and row, etc.). To overcome these disadvantages, Hunt has suggested an alternative approach to describe the topology, the use of an array of neighbours. This limits the need for discretization nodes only for the representation of the boundary conditions and the flow domain. Furthermore, the geometry of the boundaries is described more accurately using a vector representation. Most importantly, graded meshes can be employed, which are capable of restricting grid refinement only in the areas of interest (e.g. regions where hydraulic head varies rapidly, locations of pumping wells, etc.). In this study, we test the Hunt approach against MODFLOW, a well established finite difference model, and the Finite Volume Method with Simplified Integration (FVMSI). The results of this comparison are examined and critically discussed.

  18. On the Physics of Flow Separation Along a Low Pressure Turbine Blade Under Unsteady Flow Conditions

    NASA Technical Reports Server (NTRS)

    Schobeiri, Meinhard T.; Ozturk, Burak; Ashpis, David E.

    2005-01-01

    The present study, which is the first of a series of investigations dealing with specific issues of low pressure turbine (LPT) boundary layer aerodynamics, is aimed at providing detailed unsteady boundary flow information to understand the underlying physics of the inception, onset, and extent of the separation zone. A detailed experimental study on the behavior of the separation zone on the suction surface of a highly loaded LPT-blade under periodic unsteady wake flow is presented. Experimental investigations were performed at Texas A&M Turbomachinery Performance and Flow Research Laboratory using a large-scale unsteady turbine cascade research facility with an integrated wake generator and test section unit. To account for a high flow deflection of LPT-cascades at design and off-design operating points, the entire wake generator and test section unit including the traversing system is designed to allow a precise angle adjustment of the cascade relative to the incoming flow. This is done by a hydraulic platform, which simultaneously lifts and rotates the wake generator and test section unit. The unit is then attached to the tunnel exit nozzle with an angular accuracy of better than 0.05 , which is measured electronically. Utilizing a Reynolds number of 110,000 based on the blade suction surface length and the exit velocity, one steady and two different unsteady inlet flow conditions with the corresponding passing frequencies, wake velocities and turbulence intensities are investigated using hot-wire anemometry. In addition to the unsteady boundary layer measurements, blade surface pressure measurements were performed at Re=50,000, 75,000, 100,000, and 125,000 at one steady and two periodic unsteady inlet flow conditions. Detailed unsteady boundary layer measurement identifies the onset and extent of the separation zone as well as its behavior under unsteady wake flow. The results presented in ensemble-averaged and contour plot forms contribute to understanding the physics of the separation phenomenon under periodic unsteady wake flow. Several physical mechanisms are discussed.

  19. On the Physics of Flow Separation Along a Low Pressure Turbine Blade Under Unsteady Flow Conditions

    NASA Technical Reports Server (NTRS)

    Schobeiri, Meinhard T.; Ozturk, Burak; Ashpis, David E.

    2003-01-01

    The present study, which is the first of a series of investigations dealing with specific issues of low pressure turbine (LPT) boundary layer aerodynamics, is aimed at providing detailed unsteady boundary flow information to understand the underlying physics of the inception, onset, and extent of the separation zone. A detailed experimental study on the behavior of the separation zone on the suction surface of a highly loaded LPT-blade under periodic unsteady wake flow is presented. Experimental investigations were performed at Texas A&M Turbomachinery Performance and Flow Research Laboratory using a large-scale unsteady turbine cascade research facility with an integrated wake generator and test section unit. To account for a high flow deflection of LPT-cascades at design and off-design operating points, the entire wake generator and test section unit including the traversing system is designed to allow a precise angle adjustment of the cascade relative to the incoming flow. This is done by a hydraulic platform, which simultaneously lifts and rotates the wake generator and test section unit. The unit is then attached to the tunnel exit nozzle with an angular accuracy of better than 0.05 , which is measured electronically. Utilizing a Reynolds number of 110,000 based on the blade suction surface length and the exit velocity, one steady and two different unsteady inlet flowconditions with the corresponding passing frequencies, wake velocities and turbulence intensities are investigated using hot-wire anemometry. In addition to the unsteady boundary layer measurements, blade surface pressure measurements were performed at Re=50,000, 75,000, 100,000, and 125,000 at one steady and two periodic unsteady inlet flow conditions. Detailed unsteady boundary layer measurement identifies the onset and extent of the separation zone as well as its behavior under unsteady wake flow. The results presented in ensemble-averaged and contour plot forms contribute to understanding the physics of the separation phenomenon under periodic unsteady wake flow. Several physical mechanisms are discussed.

  20. Equilibrium composition of interphase boundaries

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Wynblatt, P.

    1990-01-01

    Two modeling approaches have been used to investigate segregation effects at interphase boundaries. The first approach is based on the nearest neighbor bond model, used in conjunction with the regular solution approximation, and is an extension of an earlier framework developed to address segregation phenomena at free surfaces. In order to model a semicoherent interphase boundary, we have employed a second modeling approach, based on Monte Carol simulation, in conjunction with the embedded atom method (EAM). The EAM is a powerful new method for describing interatomic interactions in metallic systems. It includes certain many-body interactions that depend on the localmore » environment of an atom. The Monte Carol approach has been applied to semicoherent interphase boundaries in Cu-Ag-Au alloys dilute in Au. These alloys consist of coexisting Cu-rich and Ag-rich phases, which differ in lattice constant by about 12%, such that good matching across in interface occurs when nine structural units of the Cu-rich phase are opposed to eight structural units of the Ag-rich phase. Thus far, interfaces with two different orientations have been studied: {l brace}001{r brace}-Cu//{l brace}001{r brace}-Ag, {l angle}110{r angle}-Cu//{l angle}110{r angle}-Ag; and {l brace}111{r brace}-Cu//{l brace}111{r brace}-Ag, {l angle}110{r angle}-Cu//{l angle}110{r angle}-Ag. These two interfaces will be referred to as the (001) and (111) interphase boundaries, for short. 18 refs.« less

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