Extreme Ultraviolet Variability Experiment (EVE) Multiple EUV Grating Spectrographs (MEGS): Radiometric Calibrations and Results

NASA Technical Reports Server (NTRS)

Hock, R. A.; Woods, T. N.; Crotser, D.; Eparvier, F. G.; Woodraska, D. L.; Chamberlin, P. C.; Woods, E. C.

2010-01-01

The NASA Solar Dynamics Observatory (SDO), scheduled for launch in early 2010, incorporates a suite of instruments including the Extreme Ultraviolet Variability Experiment (EVE). EVE has multiple instruments including the Multiple Extreme ultraviolet Grating Spectrographs (MEGS) A, B, and P instruments, the Solar Aspect Monitor (SAM), and the Extreme ultraviolet SpectroPhotometer (ESP). The radiometric calibration of EVE, necessary to convert the instrument counts to physical units, was performed at the National Institute of Standards and Technology (NIST) Synchrotron Ultraviolet Radiation Facility (SURF III) located in Gaithersburg, Maryland. This paper presents the results and derived accuracy of this radiometric calibration for the MEGS A, B, P, and SAM instruments, while the calibration of the ESP instrument is addressed by Didkovsky et al. . In addition, solar measurements that were taken on 14 April 2008, during the NASA 36.240 sounding-rocket flight, are shown for the prototype EVE instruments.

Jet Morphology and Coma Analysis of 103P/Hartley 2

NASA Astrophysics Data System (ADS)

Vaughan, Charles; Pierce, D.; Dorman, G.; Cochran, A.

2012-10-01

We have observed comet 103P/Hartley 2 using the George and Cynthia Mitchell Spectrograph (formerly VIRUS-P) on the 2.7 m telescope at McDonald Observatory (Hill et al. 2008). Data for CN, C2, C3, and NH2 were collected over six nights from 2010 July 15 to November 10. The data were processed to form images of the coma for each of the observed species. We have performed azimuthal average division on each of the coma images to examine jet morphology and have investigated the nature of the production of the radical species using our modified vectorial model (Ihalawela et al. 2011). This work enhances the ongoing investigation of the chemistry and outgassing behavior of Hartley 2 as studied by the EPOXI flyby mission.

Measuring the scatter in the cluster optical richness-mass relation with machine learning

NASA Astrophysics Data System (ADS)

Boada, Steven Alvaro

The distribution of massive clusters of galaxies depends strongly on the total cosmic mass density, the mass variance, and the dark energy equation of state. As such, measures of galaxy clusters can provide constraints on these parameters and even test models of gravity, but only if observations of clusters can lead to accurate estimates of their total masses. Here, we carry out a study to investigate the ability of a blind spectroscopic survey to recover accurate galaxy cluster masses through their line-of- sight velocity dispersions (LOSVD) using probability based and machine learning methods. We focus on the Hobby Eberly Telescope Dark Energy Experiment (HETDEX), which will employ new Visible Integral-Field Replicable Unit Spectrographs (VIRUS), over 420 degree2 on the sky with a 1/4.5 fill factor. VIRUS covers the blue/optical portion of the spectrum (3500 - 5500 A), allowing surveys to measure redshifts for a large sample of galaxies out to z < 0.5 based on their absorption or emission (e.g., [O II], Mg II, Ne V) features. We use a detailed mock galaxy catalog from a semi-analytic model to simulate surveys observed with VIRUS, including: (1) Survey, a blind, HETDEX-like survey with an incomplete but uniform spectroscopic selection function; and (2) Targeted, a survey which targets clusters directly, obtaining spectra of all galaxies in a VIRUS-sized field. For both surveys, we include realistic uncertainties from galaxy magnitude and line-flux limits. We benchmark both surveys against spectroscopic observations with perfect" knowledge of galaxy line-of-sight velocities. With Survey observations, we can recover cluster masses to ˜ 0.1 dex which can be further improved to < 0.1 dex with Targeted observations. This level of cluster mass recovery provides important measurements of the intrinsic scatter in the optical richness-cluster mass relation, and enables constraints on the key cosmological parameter, sigma 8, to < 20%. As a demonstration of the methods developed previously, we present a pilot survey with integral field spectroscopy of ten galaxy clusters optically selected from the Sloan Digital Sky Survey's DR8 at z = 0.2 - 0.3. Eight of the clusters are rich (lambda > 60) systems with total inferred masses (1.58 -17.37) x1014 M (M 200c), and two are poor (lambda < 15) systems with inferred total masses ˜ 0.5 x 1014 M? (M200c ). We use the Mitchell Spectrograph, (formerly the VIRUS-P spectrograph, a prototype of the HETDEX VIRUS instrument) located on the McDonald Observatory 2.7m telescope, to measure spectroscopic redshifts and line-of-sight velocities of the galaxies in and around each cluster, determine cluster membership and derive LOSVDs. We test both a LOSVD-cluster mass scaling relation and a machine learning based approach to infer total cluster mass. After comparing the cluster mass estimates to the literature, we use these independent cluster mass measurements to estimate the absolute cluster mass scale, and intrinsic scatter in the optical richness-mass relationship. We measure the intrinsic scatter in richness at fixed cluster mass to be sigmaM/lambda = 0.27 +/- 0.07 dex in excellent agreement with previous estimates of sigmaM/lambda ˜ 0.2 - 0.3 dex. We discuss the importance of the data used to train the machine learning methods and suggest various strategies to import the accuracy of the bias (offset) and scatter in the optical richness-cluster mass relation. This demonstrates the power of blind spectroscopic surveys such as HETDEX to provide robust cluster mass estimates which can aid in the determination of cosmological parameters and help to calibrate the observable-mass relation for future photometric large area-sky surveys.

Using Spectroscopic Profiles to Study the Morphology of Comets

NASA Astrophysics Data System (ADS)

Harris, Ien; Pierce, Donna M.; Cochran, Anita L.

2016-10-01

We have used the integral-field unit spectrograph (the George and Cynthia Mitchell Spectrograph) on the 2.7m Harlan J. Smith telescope at McDonald Observatory to obtain spectroscopic images of the comae of several comets. The images were obtained for various radical species (C2, C3. CH, CN, NH2). Radial and azimuthal average profiles of the radical species were created to enhance any observed cometary coma morphological features. We compare the observed coma features across the observed species and over the different observation periods in order to constrain possible rotational states of the observed comets. We will present results for several comets, including 2009P1 (Garradd). This work was funded by NASA's Planetary Atmospheres program (Award No. NNX14AH186).

Data report. The fate of human enteric viruses in a natural sewage recycling system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vaughn, J.M.; Landry, E.F.

1980-09-01

A two-year study was conducted to determine the virus-removing capacity of two man-made ecosystems designed for the treatment of raw domestic wastewater. The first treatment system consisted of two meadows followed by a marsh-pond unit (M/M/P). The second system contained individual marsh and pond units (M/P). All systems demonstrated moderate virus removal, with the marsh/pond system yielding the most consistent removal rates. Within this system, the greater potential for virus removal appeared to occur in the marsh unit. In addition to the production of system-oriented data, improved techniques for the concentration and enumeration of human viruses from sewage-polluted aquatic systemsmore » were developed.« less

Opto-mechanical design of a new cross dispersion unit for the CRIRES+ high resolution spectrograph for the VLT

NASA Astrophysics Data System (ADS)

Lizon, Jean Louis; Klein, Barbara; Oliva, Ernesto; Löwinger, Tom; Anglada Escude, Guillem; Baade, Dietrich; Bristow, Paul; Dorn, Reinhold J.; Follert, Roman; Grunhut, Jason; Hatzes, Artie; Heiter, Ulrike; Ives, Derek; Jung, Yves; Kerber, Florian; Lockhart, Matt; Marquart, Thomas; Origlia, Livia; Pasquini, Luca; Paufique, Jerome; Piskunov, N.; Pozna, Eszter; Reiners, Ansgar; Smette, Alain; Smoker, Jonathan; Seemann, Ulf; Stempels, Eric; Valenti, Elena

2014-07-01

CRIRES is one of the few IR (0.92-5.2 μm) high-resolution spectrographs in operation at the VLT since 2006. Despite good performance it suffers a limitation that significantly hampers its ability: a small spectral coverage per exposure. The CRIRES upgrade (CRIRES+) proposes to transform CRIRES into a cross-dispersed spectrograph while maintaining the high resolution (100000) and increasing the wavelength coverage by a factor 10 compared to the current capabilities. A major part of the upgrade is the exchange of the actual cryogenic pre-disperser module by a new cross disperser unit. In addition to a completely new optical design, a number of important changes are required on key components and functions like the slit unit and detectors units. We will outline the design of these new units fitting inside a predefined and restricted space. The mechanical design of the new functions including a description and analysis will be presented. Finally we will present the strategy for the implementation of the changes.

Cure-WISE: HETDEX Data Reduction with Astro-WISE

NASA Astrophysics Data System (ADS)

Snigula, J. M.; Drory, N.; Fabricius, M.; Landriau, M.; Montesano, F.; Hill, G. J.; Gebhardt, K.; Cornell, M. E.

2014-05-01

The Hobby-Eberly Telescope Dark Energy Experiment (HETDEX, Hill et al. 2012b) is a blind spectroscopic survey to map the evolution of dark energy using Lyman-alpha emitting galaxies at redshifts 1.9< ɀ <3.5 as tracers. The survey will use an array of 75 integral field spectrographs called the Visible Integral field Replicable Unit (IFU) Spectrograph (VIRUS, Hill et al. 2012c). The 10m HET (Ramsey et al. 1998) currently receives a wide-field upgrade (Hill et al. 2012a) to accomodate the spectrographs and to provide the needed field of view. Over the projected five year run of the survey we expect to obtain approximately 170 GB of data each night. For the data reduction we developed the Cure pipeline, to automatically find and calibrate the observed spectra, subtract the sky background, and detect and classify different types of sources. Cure employs rigorous statistical methods and complete pixel-level error propagation throughout the reduction process to ensure Poisson-limited performance and meaningful significance values. To automate the reduction of the whole dataset we implemented the Cure pipeline in the Astro-WISE framework. This integration provides for HETDEX a database backend with complete dependency tracking of the various reduction steps, automated checks, and a searchable interface to the detected sources and user management. It can be used to create various web interfaces for data access and quality control. Astro-WISE allows us to reduce the data from all the IFUs in parallel on a compute cluster. This cluster allows us to reduce the observed data in quasi real time and still have excess capacity for rerunning parts of the reduction. Finally, the Astro-WISE interface will be used to provide access to reduced data products to the general community.

MEGARA: large pupil element tests and performance

NASA Astrophysics Data System (ADS)

Martínez-Delgado, I.; Sánchez-Blanco, E.; Pérez-Calpena, A.; García-Vargas, M. L.; Maldonado, X. M.; Gil de Paz, A.; Carrasco, E.; Gallego, J.; Iglesias-Páramo, J.; Sánchez-Moreno, F. M.

2016-07-01

MEGARA is a third generation spectrograph for the Spanish 10.4m telescope (GTC) providing two observing modes: a large central Integral Field Unit (IFU), called the Large Compact Bundle (LCB), covering a FOV of 12.5 × 11.3 arcsec2, and a Multi-Object Spectrograph (MOS) with a FOV of 3.5 × 3.5 arcmin2. MEGARA will observe the whole visible range from 3650A to 10000A allowing different spectral resolutions (low, medium and high) with R = 6000, 11000 and 18000 respectively. The dispersive elements are placed at the spectrograph pupil position in the path of the collimated beam and they are composed of a set of volume phase hologram gratings (VPHs) sandwiched between two flat windows and coupled in addition to two prisms in the case of the medium- and high-resolution units. We will describe the tests and setups developed to check the requirements of all units, as well as the obtained performance at laboratory

MEGARA: the new multi-object and integral field spectrograph for GTC

NASA Astrophysics Data System (ADS)

Carrasco, E.; Páez, G.; Izazaga-Pére, R.; Gil de Paz, A.; Gallego, J.; Iglesias-Páramo, J.

2017-07-01

MEGARA is an optical integral-field unit and multi-object spectrograph for the 10.4m Gran Telescopio Canarias. Both observational modes will provide identical spectral resolutions Rfwhm ˜ 6,000, 12,000 and 18,700. The spectrograph is a collimator-camera system. The unique characteristics of MEGARA in terms of throughput and versatility make this instrument the most efficient tool to date to analyze astrophysical objects at intermediate spectral resolutions. The instrument is currently at the telescope for on-sky commissioning. Here we describe the as-built main characteristics the instrument.

Using an integral-field unit spectrograph to study radical species in cometary coma

NASA Astrophysics Data System (ADS)

Lewis, Benjamin; Pierce, Donna M.; Vaughan, Charles M.; Cochran, Anita

2015-01-01

We have observed several comets using an integral-field unit spectrograph (the George and Cynthia Mitchell Spectrograph) on the 2.7m Harlan J. Smith telescope at McDonald Observatory. Full-coma spectroscopic images were obtained for various radical species (C2, C3, CN, NH2). Various coma enhancements were used to identify and characterize coma morphological features. The azimuthal average profiles and the Haser model were used to determine production rates and possible parent molecules. Here, we present the work completed to date, and we compare our results to other comet taxonomic surveys. This work was funded by the National Science Foundation Graduate K-12 (GK-12) STEM Fellows program (Award No. DGE-0947419), NASA's Planetary Atmospheres program (Award No. NNX14AH18G), and the Fund for Astrophysical Research, Inc.

Using an integral-field unit spectrograph to study radical species in cometary coma

NASA Astrophysics Data System (ADS)

Lewis, Benjamin; Pierce, Donna; Cochran, Anita; Vaughan, Charles

2014-11-01

We have observed several comets using an integral-field unit spectrograph (the George and Cynthia Mitchell Spectrograph) on the 2.7m Harlan J. Smith telescope at McDonald Observatory. Full-coma spectroscopic images were obtained for various radical species (C2, C3, CN, NH2). Various coma enhancements were used to identify and characterize coma morphological features. The azimuthal average profiles and the Haser model were used to determine production rates and possible parent molecules. Here, we present the work completed to date, and we compare our results to other comet taxonomic surveys. This work was funded by the National Science Foundation Graduate K-12 (GK-12) STEM Fellows program (Award No. DGE-0947419), NASA’s Planetary Atmospheres program (Award No. NNX14AH18G), and the Fund for Astrophysical Research, Inc.

Deployment of the Hobby-Eberly Telescope wide-field upgrade

NASA Astrophysics Data System (ADS)

Hill, Gary J.; Drory, Niv; Good, John M.; Lee, Hanshin; Vattiat, Brian L.; Kriel, Herman; Ramsey, Jason; Bryant, Randy; Elliot, Linda; Fowler, Jim; Häuser, Marco; Landiau, Martin; Leck, Ron; Odewahn, Stephen; Perry, Dave; Savage, Richard; Schroeder Mrozinski, Emily; Shetrone, Matthew; DePoy, D. L.; Prochaska, Travis; Marshall, J. L.; Damm, George; Gebhardt, Karl; MacQueen, Phillip J.; Martin, Jerry; Armandroff, Taft; Ramsey, Lawrence W.

2016-07-01

The Hobby-Eberly Telescope (HET) is an innovative large telescope, located in West Texas at the McDonald Observatory. The HET operates with a fixed segmented primary and has a tracker, which moves the four-mirror corrector and prime focus instrument package to track the sidereal and non-sidereal motions of objects. We have completed a major multi-year upgrade of the HET that has substantially increased the pupil size to 10 meters and the field of view to 22 arcminutes by replacing the corrector, tracker, and prime focus instrument package. The new wide field HET will feed the revolutionary integral field spectrograph called VIRUS, in support of the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX§), a new low resolution spectrograph (LRS2), an upgraded high resolution spectrograph (HRS2), and later the Habitable Zone Planet Finder (HPF). The upgrade is being commissioned and this paper discusses the completion of the installation, the commissioning process and the performance of the new HET.

The control unit of the near infrared spectrograph of the Euclid space mission: detailed design

NASA Astrophysics Data System (ADS)

Toledo-Moreo, Rafael; Colodro-Conde, Carlos; Gómez-Sáenz-de-Tejada, Jaime; Pérez-Lizán, David; Díaz-García, José Javier; Tubío-Araujo, Óscar; Raichs, Cayetano; Catalán, Jordi; Rebolo-López, Rafael

2016-07-01

The Near Infrared Spectrograph and Photometer (NISP) is one of the instruments on board the ESA EUCLID mission. The Universidad Politécnica de Cartagena and Instituto de Astrofísica de Canarias are responsible of the Instrument Control Unit of the NISP (NI-ICU) in the Euclid Consortium. The NI-ICU hardware is developed by CRISA (Airbus Defence and Space), and its main functions are: communication with the S/C and the Data Processing Unit, control of the Filter and Grism Wheels, control of the Calibration Unit and thermal control of the instrument. This paper presents the NI-ICU status of definition and design at the end of the detailed design phase.

Mapping the Extent of M82's outlfows with VIRUS-P

NASA Astrophysics Data System (ADS)

Indahl, Briana; Hill, Gary J.; Drory, Niv; McLinden, Emily

2017-06-01

Starburst-driven outflows (SBDOs) and other feedback processes play a critical role in the evolution of galaxies through the regulation and disruption of star formation. However, our ability to observe and quantify feedback from SBDOs directly has been limited by the inability to obtain the spectroscopy needed for physical diagnostics over the large areas of local SBDOs. We present integral field spectroscopy taken with the George and Cynthia Mitchell Spectrograph (VIRUS-P) on the 2.7 meter Harlan J. Smith Telescope at McDonald Observatory mapping the full extent of M82’s northern outflow out to ~12kpc covering ~139 square arcminutes. We measured line ratios ([OIII]/Hβ, [OI]/Hα, [NII]/Hα), [SII]/Hα) for each spaxel in our fields. Using Ionization Diagnostic Diagrams (IDDs) we spatially map shock dominated regions which we show trace the biconical structure of the outflow. M82 is a local galaxy (z~0.000677) and the classical example of a starburst galaxy with vigorous outflows. As a result it has been comprehensively studied for nearly 50 years. However, we present the most sensitive and extensive map of the warm ionized gas to date from the disk to the Hα cap at ~12kpc.

Development of micro-mirror slicer integral field unit for space-borne solar spectrographs

NASA Astrophysics Data System (ADS)

Suematsu, Yoshinori; Saito, Kosuke; Koyama, Masatsugu; Enokida, Yukiya; Okura, Yukinobu; Nakayasu, Tomoyasu; Sukegawa, Takashi

2017-12-01

We present an innovative optical design for image slicer integral field unit (IFU) and a manufacturing method that overcomes optical limitations of metallic mirrors. Our IFU consists of a micro-mirror slicer of 45 arrayed, highly narrow, flat metallic mirrors and a pseudo-pupil-mirror array of off-axis conic aspheres forming three pseudo slits of re-arranged slicer images. A prototype IFU demonstrates that the final optical quality is sufficiently high for a visible light spectrograph. Each slicer micro-mirror is 1.58 mm long and 30 μm wide with surface roughness ≤1 nm rms, and edge sharpness ≤ 0.1 μm, etc. This IFU is small size and can be implemented in a multi-slit spectrograph without any moving mechanism and fore optics, in which one slit is real and the others are pseudo slits from the IFU. The IFU mirrors were deposited by a space-qualified, protected silver coating for high reflectivity in visible and near IR wavelength regions. These properties are well suitable for space-borne spectrograph such as the future Japanese solar space mission SOLAR-C. We present the optical design, performance of prototype IFU, and space qualification tests of the silver coating.

Fiber IFU unit for the second generation VLT spectrograph KMOS

NASA Astrophysics Data System (ADS)

Tomono, Daigo; Weisz, Harald; Hofmann, Reiner

2003-03-01

KMOS is a cryogenic multi-object near-infrared spectrograph for the VLT. It will be equipped with about 20 deployable integral field units (IFUs) which can be positioned anywhere in the 7.2 arcmin diameter field o the VLT Nasmyth focus by a cryogenic robot. We describe IFUs using micro lens arrays and optical fibers to arrange the two-dimensional fields from the IFUs on the spectrograph entrance slit. Each micro-lens array is mounted in a spider arm which also houses the pre-optics with a cold stop. The spider arms are positioned by a cryogenic robot which is built around the image plane. For the IFUs, two solutions are considered: monolithic mirco-lens arrays with fibers attached to the back where the entrance pupil is imaged, and tapered fibers with integrated lenses which are bundled together to form a lens array. The flexibility of optical fibers relaxes boundary conditions for integration of the instrument components. On the other hand, FRD and geometric characteristics of optical fibers leads to higher AΩ accepted by the spectrograph. Conceptual design of the instrument is presented as well as advantages and disadvantages of the fiber IFUs.

A Search for Rarely Seen Ultraviolet Coma Emissions and New Species Upper Limits at Comet 67P/Churyumov-Gerasimenko Using the Rosetta-Alice Ultraviolet Spectrograph

NASA Astrophysics Data System (ADS)

Noonan, J.; Stern, S. A.; Parker, J. W.; Keeney, B. A.; Weaver, H. A., Jr.; Feldman, P.; Steffl, A.; Feaga, L. M.; Bertaux, J. L.

2017-12-01

The Alice far/extreme-UV spectrograph aboard Rosetta is one of three US instruments provided by NASA; it is the first UV spectrograph to reach any comet. Numerous scientific results have been obtained regarding 67P/Churyumov-Gerasimenko by this instrument. Here we summarize two new sets of results from a search for rarely appearing atomic and molecular spectral emission features and a grand sum spectrum allowing us to place new atomic and molecular neutral and ionized species upper limits in the comet's coma.

Mapping luminous blue compact galaxies with VIRUS-P. Morphology, line ratios, and kinematics

NASA Astrophysics Data System (ADS)

Cairós, L. M.; Caon, N.; García Lorenzo, B.; Kelz, A.; Roth, M.; Papaderos, P.; Streicher, O.

2012-11-01

Context. Blue compact galaxies (BCG) are narrow emission-line systems that undergo a violent burst of star formation. They are compact, low-luminosity galaxies, with blue colors and low chemical abundances, which offer us a unique opportunity to investigate collective star formation and its effects on galaxy evolution in a relatively simple, dynamically unperturbed environment. Spatially resolved spectrophotometric studies of BCGs are essential for a better understanding of the role of starburst-driven feedback processes on the kinematical and chemical evolution of low-mass galaxies near and far. Aims: We carry out an integral field spectroscopy (IFS) study of a sample of luminous BCGs, with the aim to probe the morphology, kinematics, dust extinction, and excitation mechanisms of their warm interstellar medium (ISM). Methods: We obtained IFS data for five luminous BCGs with VIRUS-P, the prototype instrument for the Visible Integral Field Replicable Unit Spectrograph, attached to the 2.7 m Harlan J. Smith Telescope at the McDonald Observatory. VIRUS-P consists of a square array of 247 optical fibers, which covers a 109″ × 109″ field of view, with a spatial sampling of 4farcs2 and a 0.3 filling factor. We observed in the 3550-5850 Å spectral range, with a resolution of 5 Å FWHM. From these data we built two-dimensional maps of the continuum and the most prominent emission-lines ([O ii] λ3727, Hγ, Hβ and [O iii] λ5007), and investigated the morphology of diagnostic emission-line ratios and the extinction patterns in the ISM as well as stellar and gas kinematics. Additionally, from integrated spectra we inferred total line fluxes and luminosity-weighted extinction coefficients and gas-phase metallicities. Results: All galaxies exhibit an overall regular morphology in the stellar continuum, while their warm ISM morphology is more complex: in II Zw 33 and Mrk 314, the star-forming regions are aligned along a chain-structure; Haro 1, NGC 4670 and III Zw 102 display several salient features, such as extended gaseous filaments and bubbles. A significant intrinsic absorption by dust is present in all galaxies, the most extreme case being III Zw 102. Our data reveal a plethora of kinematical patterns, from overall regular gas and stellar rotation to complex velocity fields produced by structurally and kinematically distinct components.

Dark Matter Halos with VIRUS-P

NASA Astrophysics Data System (ADS)

Murphy, Jeremy; Gebhardt, K.

2010-05-01

We present new, two-dimensional stellar kinematic data on several of the most massive galaxies in the local universe. These data were taken with the integral field spectrograph, VIRUS-P, and extend to unprecedented radial distances. Once robust stellar kinematics are in hand, we run orbit-based axisymmetric dynamical models in order to constrain the stellar mass-to-light ratio and dark matter halo parameters. We have run a large set of dynamical models on the second rank galaxy in the Virgo cluster, M87, and find clear evidence for a massive dark matter halo. The two-dimensional stellar kinematics for several of our other targets, all first and second rank galaxies, are also presented. Dark matter halos are known to dominate the mass profile of elliptical galaxies somewhere between one to two effective radii, yet due to the low surface brightness at these radial distances, determining stellar dynamics is technologically challenging. To overcome this, constraints on the dark matter halo are often made with planetary nebulae or globular clusters at large radii. However, as results from different groups have returned contradictory results, it remains unclear whether different dynamical tracers always follow the stellar kinematics. Due to VIRUS-P's large field of view and on-sky fiber diameter, we are able to determine stellar kinematics at radial distances that overlap with other dynamical tracers. Understanding what the dynamics of stars, planetary nebula and globular clusters tell us about both the extent of the dark matter halo profile and the formation histories of the largest elliptical galaxies is a primary science driver for this work.

OPTIMOS-EVE optical design of a very efficient, high-multiplex, large spectral coverage, fiber-fed spectrograph at EELT

NASA Astrophysics Data System (ADS)

Spanò, P.; Tosh, I.; Chemla, F.

2010-07-01

OPTIMOS-EVE is a fiber-fed, high-multiplex, high-efficiency, large spectral coverage spectrograph for EELT covering visible and near-infrared simultaneously. More than 200 seeing-limited objects will be observed at the same time over the full 7 arcmin field of view of the telescope, feeding the spectrograph, asking for very large multiplexing at the spectrograph side. The spectrograph consists of two identical units. Each unit will have two optimized channels to observe both visible and near-infrared wavelengths at the same time, covering from 0.37 to 1.7 micron. To maximize the scientific return, a large simultaneous spectral coverage per exposure was required, up to 1/3 of the central wavelength. Moreover, different spectral resolution modes, spanning from 5'000 to 30'000, were defined to match very different sky targets. Many different optical solutions were generated during the initial study phase in order to select that one that will maximize performances within given constraints (mass, space, cost). Here we present the results of this study, with special attention to the baseline design. Efforts were done to keep size of the optical components well within present state-of-the-art technologies. For example, large glass blank sizes were limited to ~35 cm maximum diameter. VPH gratings were selected as dispersers, to improve efficiency, following their superblaze curve. This led to scanning gratings and cameras. Optical design will be described, together with expected performances.

VIRUS-P Integral Field Spectroscopy of NGC 3310

NASA Astrophysics Data System (ADS)

Powell, Kathryn E.; Dufour, R. J.; Kwitter, K. B.; Robertson, P.

2012-05-01

We present the results of spectrophotometric mapping of the SAB(r)bc galaxy NGC 3310 using the VIRUS-P integral field spectrograph on the 2.7m Harlan Smith Telescope at McDonald Observatory (Hill et al. 2008 Proc. SPIE, 7014, 701470). VIRUS-P has an IFU consisting of 246 fibers arranged in an array covering a 2.82 arcmin square FOV with each fiber covering a 4.16 arcsec diameter region. The fibers have a 1/3 filling factor so the observations were dithered with alternating object-sky integrations. The FOV essentially covered the entire visible disk of NGC 3310, enabling a spatial study of the H II regions and stellar properties. Two grating tilts were used, resulting in spectra covering 3400-5600 A and 4600-6800 A with 5 A resolution. The spectra were combined, sky subtracted, and calibrated using the photometric standard star HZ44. We produced an integrated spectrum of the galaxy, which we compare with that from a study of NGC 628 with a similar instrument by Sanchez et al. (2011 MNRAS, 410, 313). We also present an analysis of radial variations in diagnostic emission line ratios of the H II regions such as [O III]5007/Hbeta (excitation), [N II]6583/Halpha, [S II]6717/6730 (electron density), and Halpha/Hbeta (reddening) among others. Since VIRUS-P obtained spectra of the stellar population adjacent to the H II regions, we can partially subtract the underlying stellar continua Balmer line absorption to improve the true Halpha/Hbeta ratio in the nebulae that is useful for mapping the radial variation in reddening and dust content. We also analyzed the radial variation in various emission lines in the H II regions to assess abundance gradients. This research is supported in part by a Rice University undergraduate research grant to K. Powell. We also express gratitude to McDonald Observatory, University of Texas at Austin, for a generous allotment of observing time.

Hobby-Eberly Telescope Dark Energy Experiment Fiber Optic Testing System

NASA Astrophysics Data System (ADS)

Fuller, Lindsay

2011-01-01

The Hobby-Eberly Telescope Dark Energy Experiment (HETDEX) is a spectroscopic survey that will collect data from nearly one million Lyman-α emitting galaxies at a redshift of 1.8 < z < 3.8 in order to characterize dark energy. To accomplish this, over 33,000 optical fibers will feed light from these galaxies into 150 Visible Integral-Field Replicable Unit Spectrographs (VIRUS), an order of magnitude greater than has been done before. A fiber optic test bench has been constructed at the University of Texas at Austin in order to test the transmission and focal ratio degradation (FRD) of individual fibers at several wavelengths ranging from 350-600nm. Furthermore, the fiber optic bundles are undergoing extensive lifetime tests at the Center for Electromechanics on the university’s research campus which will simulate 10 years of motion on the Hobby-Eberly Telescope.

Achieving the resolution of the spectrograph of the 6m large Azimuthal telescope

NASA Astrophysics Data System (ADS)

Sazonenko, Dmitrii; Kukushkin, Dmitrii; Bakholdin, Alexey; Valyavin, Gennady

2016-08-01

Special Astrophysical Observatory of Russian Academy of Sciences (SAO RAS) creates a spectrograph with high spectral resolution for the 6-meter telescope. The spectrograph consists of a mobile unit located at the focus of the telescope's main mirror, a stationary part located under the telescope and optical fibers which transmit light from the mobile part to the stationary one. The spectral resolution of the stationary part should be R=100000. To achieve such a value, the scheme has two spectral elements, with cross-dispersion. The main spectral element is an echelle grating. The second spectral element is a prism with a diffraction grating on one facet.

The reversibility of virus attachment to mineral surfaces

USGS Publications Warehouse

Loveland, J.P.; Ryan, J.N.; Amy, G.L.; Harvey, R.W.

1996-01-01

Virus transport through groundwater is limited by attachment to mineral surfaces and inactivation. Current virus transport models do not consider the implications of the reversibility of virus attachment to minerals. To explore the reversibility of virus attachment to mineral surfaces, we attached PRD1, a bacteriophage considered to be a good model of enteric viruses, to quartz and ferric oxyhydroxide-coated quartz surfaces over a range of pH values in equilibrium 'static columns'. Following attachment, we detached the viruses by replacing the pore solution with solutions of equal and higher pH. The extent of virus attachment followed an attachment 'edge' that occurred at a pH value about 2.5-3.5 pH units above the pH(IEP) of the mineral surfaces. Viruses attached below this edge were irreversibly attached until the pH of the detachment solution exceeded the pH value of the attachment edge. Viruses attached above this edge were reversibly attached. Derjaguin-Landau-Verwey-Overbeek (DEVO) potential energy calculations showed that the attachment edge occurred at the pH at which the potential energy of the primary minimum was near zero, implying that the position of the primary minimum (attractive or repulsive) controlled the equilibrium distribution of the viruses. The results suggest that the reversibility of virus attachment must be considered in virus transport models for accurate predictions of virus travel time.

Conceptual design for an AIUC multi-purpose spectrograph camera using DMD technology

NASA Astrophysics Data System (ADS)

Rukdee, S.; Bauer, F.; Drass, H.; Vanzi, L.; Jordan, A.; Barrientos, F.

2017-02-01

Current and upcoming massive astronomical surveys are expected to discover a torrent of objects, which need groundbased follow-up observations to characterize their nature. For transient objects in particular, rapid early and efficient spectroscopic identification is needed. In particular, a small-field Integral Field Unit (IFU) would mitigate traditional slit losses and acquisition time. To this end, we present the design of a Digital Micromirror Device (DMD) multi-purpose spectrograph camera capable of running in several modes: traditional longslit, small-field patrol IFU, multi-object and full-field IFU mode via Hadamard spectra reconstruction. AIUC Optical multi-purpose CAMera (AIUCOCAM) is a low-resolution spectrograph camera of R 1,600 covering the spectral range of 0.45-0.85 μm. We employ a VPH grating as a disperser, which is removable to allow an imaging mode. This spectrograph is envisioned for use on a 1-2 m class telescope in Chile to take advantage of good site conditions. We present design decisions and challenges for a costeffective robotized spectrograph. The resulting instrument is remarkably versatile, capable of addressing a wide range of scientific topics.

Prevalence of human immunodeficiency virus type 1 p24 antigen in U.S. blood donors--an assessment of the efficacy of testing in donor screening. The HIV-Antigen Study Group.

PubMed

Alter, H J; Epstein, J S; Swenson, S G; VanRaden, M J; Ward, J W; Kaslow, R A; Menitove, J E; Klein, H G; Sandler, S G; Sayers, M H

1990-11-08

We performed a multicenter study in 1989 to determine whether screening whole-blood donors for human immunodeficiency virus type 1 (HIV-1) p24 antigen would improve transfusion safety by identifying carriers of the virus who are seronegative for HIV-1 antibody. More than 500,000 donations were tested at 13 U.S. blood centers with test kits from two manufacturers. Units found repeatedly reactive were retested in a central laboratory; if the results were positive, they were confirmed by a neutralization assay. A subgroup of units was also tested for HIV-1 by the polymerase chain reaction. Selected donors confirmed or not confirmed as having p24 antigen were contacted for follow-up interviews to identify risk factors and undergo retesting for HIV-1 markers. Positive tests for p24 antigen were confirmed by neutralization in five donors (0.001 percent of all donations tested), all of whom were also positive for HIV-1 antibody and HIV-1 by polymerase chain reaction. Three of the antigen-positive donors had other markers of infectious disease that would have resulted in the exclusion of their blood; two had risk factors for HIV-1 that should have led to self-exclusion. Of 220 blood units with repeatedly reactive p24 antigen whose presence could not be confirmed by neutralization (0.04 percent of the donations studied), none were positive for HIV-1 antibody, HIV-1 by polymerase chain reaction (120 units tested), or virus culture (76 units tested)--attesting to the specificity of confirmatory neutralization. The finding that no donation studied was positive for p24 antigen and negative for HIV-1 antibody suggests that screening donors for p24 antigen with tests of the current level of sensitivity would not add substantially to the safety of the U.S. blood supply.

Preliminary crystallographic analysis of the major capsid protein P2 of the lipid-containing bacteriophage PM2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abrescia, Nicola G. A.; Kivelä, Hanna M.; Grimes, Jonathan M.

2005-08-01

The viral capsid protein P2 of bacteriophage PM2 has been crystallized. Preliminary X-ray analysis demonstrates the position and orientation of the two trimers in the asymmetric unit. PM2 (Corticoviridae) is a dsDNA bacteriophage which contains a lipid membrane beneath its icosahedral capsid. In this respect it resembles bacteriophage PRD1 (Tectiviridae), although it is not known whether the similarity extends to the detailed molecular architecture of the virus, for instance the fold of the major coat protein P2. Structural analysis of PM2 has been initiated and virus-derived P2 has been crystallized by sitting-nanodrop vapour diffusion. Crystals of P2 have been obtainedmore » in space group P2{sub 1}2{sub 1}2, with two trimers in the asymmetric unit and unit-cell parameters a = 171.1, b = 78.7, c = 130.1 Å. The crystals diffract to 4 Å resolution at the ESRF BM14 beamline (Grenoble, France) and the orientation of the non-crystallographic threefold axes, the spatial relationship between the two trimers and the packing of the trimers within the unit cell have been determined. The trimers form tightly packed layers consistent with the crystal morphology, possibly recapitulating aspects of the arrangement of subunits in the virus.« less

Cracking the Code of Faraway Worlds

NASA Technical Reports Server (NTRS)

2007-01-01

This infrared data from NASA's Spitzer Space Telescope - called a spectrum - tells astronomers that a distant gas planet, a so-called 'hot Jupiter' called HD 209458b, might be smothered with high clouds. It is one of the first spectra of an alien world.

A spectrum is created when an instrument called a spectrograph cracks light from an object open into a rainbow of different wavelengths. Patterns or ripples within the spectrum indicate the presence, or absence, of molecules making up the object.

Astronomers using Spitzer's spectrograph were able to obtain infrared spectra for two so-called 'transiting' hot-Jupiter planets using the 'secondary eclipse' technique. In this method, the spectrograph first collects the combined infrared light from the planet plus its star, then, as the planet is eclipsed by the star, the infrared light of just the star. Subtracting the latter from the former reveals the planet's own rainbow of infrared colors.

When astronomers first saw the infrared spectrum above, they were shocked. It doesn't look anything like what theorists had predicted. For example, theorists thought there'd be signatures of water in the wavelength ranges of 8 to 9 microns. The fact that water is not detected might indicate that it is hidden under a thick blanket of high, dry clouds.

In addition, the spectrum shows signs of silicate dust -- tiny grains of sand -- in the wavelength range of 9 to 10 microns. This suggests that the planet's skies could be filled with high clouds of dust unlike anything seen in our own solar system.

There is also an unidentified molecular signature at 7.78 microns. Future observations using Spitzer's spectrograph should be able to determine the nature of the mysterious feature.

This spectrum was produced by Dr. Jeremy Richardson of NASA's Goddard Space Flight Center, Greenbelt, Md. and his colleagues. The data were taken by Spitzer's infrared spectrograph on July 6 and 13, 2005.

Pathogenicity and Transmission in Pigs of the Novel A(H3N2)v Influenza Virus Isolated from Humans and Characterization of Swine H3N2 Viruses Isolated in 2010-2011

PubMed Central

Kitikoon, Pravina; Gauger, Phillip C.; Schlink, Sarah N.; Bayles, Darrell O.; Gramer, Marie R.; Darnell, Daniel; Webby, Richard J.; Lager, Kelly M.; Swenson, Sabrina L.; Klimov, Alexander

2012-01-01

Swine influenza virus (SIV) H3N2 with triple reassorted internal genes (TRIG) has been enzootic in Unites States since 1998. Transmission of the 2009 pandemic H1N1 (pH1N1) virus to pigs in the United States was followed by reassortment with endemic SIV, resulting in reassorted viruses that include novel H3N2 genotypes (rH3N2p). Between July and December 2011, 12 cases of human infections with swine-lineage H3N2 viruses containing the pandemic matrix (pM) gene [A(H3N2)v] were detected. Whole-genome analysis of H3N2 viruses isolated from pigs from 2009 to 2011 sequenced in this study and other available H3N2 sequences showed six different rH3N2p genotypes present in the U.S. swine population since 2009. The presence of the pM gene was a common feature among all rH3N2p genotypes, but no specific genotype appeared to predominate in the swine population. We compared the pathogenic, transmission, genetic, and antigenic properties of a human A(H3N2)v isolate and two swine H3N2 isolates, H3N2-TRIG and rH3N2p. Our in vivo study detected no increased virulence in A(H3N2)v or rH3N2p viruses compared to endemic H3N2-TRIG virus. Antibodies to cluster IV H3N2-TRIG and rH3N2p viruses had reduced cross-reactivity to A(H3N2)v compared to other cluster IV H3N2-TRIG and rH3N2p viruses. Genetic analysis of the hemagglutinin gene indicated that although rH3N2p and A(H3N2)v are related to cluster IV of H3N2-TRIG, some recent rH3N2p isolates appeared to be forming a separate cluster along with the human isolates of A(H3N2)v. Continued monitoring of these H3N2 viruses is necessary to evaluate the evolution and potential loss of population immunity in swine and humans. PMID:22491461

Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011.

PubMed

Kitikoon, Pravina; Vincent, Amy L; Gauger, Phillip C; Schlink, Sarah N; Bayles, Darrell O; Gramer, Marie R; Darnell, Daniel; Webby, Richard J; Lager, Kelly M; Swenson, Sabrina L; Klimov, Alexander

2012-06-01

Swine influenza virus (SIV) H3N2 with triple reassorted internal genes (TRIG) has been enzootic in Unites States since 1998. Transmission of the 2009 pandemic H1N1 (pH1N1) virus to pigs in the United States was followed by reassortment with endemic SIV, resulting in reassorted viruses that include novel H3N2 genotypes (rH3N2p). Between July and December 2011, 12 cases of human infections with swine-lineage H3N2 viruses containing the pandemic matrix (pM) gene [A(H3N2)v] were detected. Whole-genome analysis of H3N2 viruses isolated from pigs from 2009 to 2011 sequenced in this study and other available H3N2 sequences showed six different rH3N2p genotypes present in the U.S. swine population since 2009. The presence of the pM gene was a common feature among all rH3N2p genotypes, but no specific genotype appeared to predominate in the swine population. We compared the pathogenic, transmission, genetic, and antigenic properties of a human A(H3N2)v isolate and two swine H3N2 isolates, H3N2-TRIG and rH3N2p. Our in vivo study detected no increased virulence in A(H3N2)v or rH3N2p viruses compared to endemic H3N2-TRIG virus. Antibodies to cluster IV H3N2-TRIG and rH3N2p viruses had reduced cross-reactivity to A(H3N2)v compared to other cluster IV H3N2-TRIG and rH3N2p viruses. Genetic analysis of the hemagglutinin gene indicated that although rH3N2p and A(H3N2)v are related to cluster IV of H3N2-TRIG, some recent rH3N2p isolates appeared to be forming a separate cluster along with the human isolates of A(H3N2)v. Continued monitoring of these H3N2 viruses is necessary to evaluate the evolution and potential loss of population immunity in swine and humans.

Status of the JWST Science Instrument Payload

NASA Technical Reports Server (NTRS)

Greenhouse, Matt

2016-01-01

The James Webb Space Telescope (JWST) Integrated Science Instrument Module (ISIM) system consists of five sensors (4 science): Mid-Infrared Instrument (MIRI), Near Infrared Imager and Slitless Spectrograph (NIRISS), Fine Guidance Sensor (FGS), Near InfraRed Camera (NIRCam), Near InfraRed Spectrograph (NIRSpec); and nine instrument support systems: Optical metering structure system, Electrical Harness System; Harness Radiator System, ISIM Electronics Compartment, ISIM Remote Services Unit, Cryogenic Thermal Control System, Command and Data Handling System, Flight Software System, Operations Scripts System.

VizieR Online Data Catalog: weak G-band stars abundances (Palacios+, 2016)

NASA Astrophysics Data System (ADS)

Palacios, A.; Jasniewicz, G.; Masseron, T.; Thevenin, F.; Itam-Pasquet, J.; Parthasarathy, M.

2016-05-01

Seventeen southern wGb stars were observed at La Silla, ESO Chile, with the high-efficiency Fiber-fed Extended Range Optical Spectrograph FEROS spectrograph mounted on the 2.2m telescope. FEROS is a bench-mounted, thermally controlled, prism-cross-dispersed echelle spectrograph, providing, in a single spectrogram spread over 39 orders, almost complete spectral coverage from ~350 to ~920nm at a resolution of 48000. The FEROS observations were carried out during an observing run between May 10 and 13, 2012. All these spectra were flat-fielded and calibrated by means of ThArNe exposures using standard processing tools available at ESO. In addition, two northern wGb stars, HD 18474 and HD 166208, were observed in service mode at the Observatoire du Pic du Midi, France, with the NARVAL spectrograph mounted on the Bernard Lyot 2.0m telescope. The NARVAL instrument consists of a bench-mounted cross-dispersed echelle spectrograph, fibre-fed from a Cassegrain-mounted polarimeter unit. It was used in its non-polarimetric mode; it provided almost complete spectral coverage from ~375 to ~1050nm at a resolution of 75000 in a single spectrogram spread over 40 orders. (6 data files).

Development of a slicer integral field unit for the existing optical spectrograph FOCAS: progress

NASA Astrophysics Data System (ADS)

Ozaki, Shinobu; Tanaka, Yoko; Hattori, Takashi; Mitsui, Kenji; Fukushima, Mitsuhiro; Okada, Norio; Obuchi, Yoshiyuki; Tsuzuki, Toshihiro; Miyazaki, Satoshi; Yamashita, Takuya

2014-07-01

We are developing an integral field unit (IFU) with an image slicer for the existing optical spectrograph, Faint Object Camera And Spectrograph (FOCAS), on the Subaru Telescope. The slice width is 0.43 arcsec, the slice number is 23, and the field of view is 13.5 × 9.89 arcsec2. Sky spectrum separated by about 5.7 arcmin from an object field can be simultaneously obtained, which allows us precise background subtraction. Slice mirrors, pupil mirrors and slit mirrors are all glass, and their mirror surfaces are fabricated by polishing. Our IFU is about 200 mm × 300 mm × 80 mm in size and 1 kg in weight. It is installed into a mask storage in FOCAS along with one or two mask plates, and inserted into the optical path by using the existing mask exchange mechanism. This concept allow us flexible operation such as Targets of Opportunity observations. High reflectivity of multilayer dielectric coatings offers high throughput (>80%) of the IFU. In this paper, we will report a final optical layout, its performances, and results of prototyping works.

Disinfection of Ebola Virus in Sterilized Municipal Wastewater

PubMed Central

Fischer, Robert J.; Casson, Leonard W.; de Carvalho, Nathalia Aquino; Haas, Charles N.; Munster, Vincent J.

2017-01-01

Concerns have been raised regarding handling of Ebola virus contaminated wastewater, as well as the adequacy of proposed disinfection approaches. In the current study, we investigate the inactivation of Ebola virus in sterilized domestic wastewater utilizing sodium hypochlorite addition and pH adjustment. No viral inactivation was observed in the one-hour tests without sodium hypochlorite addition or pH adjustment. No virus was recovered after 20 seconds (i.e. 4.2 log10 unit inactivation to detection limit) following the addition of 5 and 10 mg L-1 sodium hypochlorite, which resulted in immediate free chlorine residuals of 0.52 and 1.11 mg L-1, respectively. The addition of 1 mg L-1 sodium hypochlorite resulted in an immediate free chlorine residual of 0.16 mg L-1, which inactivated 3.5 log10 units of Ebola virus in 20 seconds. Further inactivation was not evident due to the rapid consumption of the chlorine residual. Elevating the pH to 11.2 was found to significantly increase viral decay over ambient conditions. These results indicate the high susceptibility of the enveloped Ebola virus to disinfection in the presence of free chlorine in municipal wastewater; however, we caution that extension to more complex matrices (e.g. bodily fluids) will require additional verification. PMID:28146555

Disinfection of Ebola Virus in Sterilized Municipal Wastewater.

PubMed

Bibby, Kyle; Fischer, Robert J; Casson, Leonard W; de Carvalho, Nathalia Aquino; Haas, Charles N; Munster, Vincent J

2017-02-01

Concerns have been raised regarding handling of Ebola virus contaminated wastewater, as well as the adequacy of proposed disinfection approaches. In the current study, we investigate the inactivation of Ebola virus in sterilized domestic wastewater utilizing sodium hypochlorite addition and pH adjustment. No viral inactivation was observed in the one-hour tests without sodium hypochlorite addition or pH adjustment. No virus was recovered after 20 seconds (i.e. 4.2 log10 unit inactivation to detection limit) following the addition of 5 and 10 mg L-1 sodium hypochlorite, which resulted in immediate free chlorine residuals of 0.52 and 1.11 mg L-1, respectively. The addition of 1 mg L-1 sodium hypochlorite resulted in an immediate free chlorine residual of 0.16 mg L-1, which inactivated 3.5 log10 units of Ebola virus in 20 seconds. Further inactivation was not evident due to the rapid consumption of the chlorine residual. Elevating the pH to 11.2 was found to significantly increase viral decay over ambient conditions. These results indicate the high susceptibility of the enveloped Ebola virus to disinfection in the presence of free chlorine in municipal wastewater; however, we caution that extension to more complex matrices (e.g. bodily fluids) will require additional verification.

Intensive care unit patients with 2009 pandemic influenza A (H1N1pdm09) virus infection - United States, 2009.

PubMed

Bramley, Anna M; Dasgupta, Sharoda; Skarbinski, Jacek; Kamimoto, Laurie; Fry, Alicia M; Finelli, Lyn; Jain, Seema

2012-11-01

The influenza A (H1N1pdm09) [pH1N1] virus resulted in intensive care unit (ICU) admissions, acute respiratory distress syndrome (ARDS), and death.   To describe the characteristics of ICU patients with pH1N1 virus infection in the United States during the spring and fall of 2009 and to describe the factors associated with severe complications including ARDS and death.   Through two national case-series conducted during spring and fall of 2009, medical charts were reviewed on ICU patients with laboratory-confirmed pH1N1 infection by real-time reverse-transcriptase polymerase chain reaction.   The majority (77%) of 154 patients hospitalized in an ICU were <50 years of age, and 65% had at least one underlying medical condition. One hundred and twenty-eight (83%) patients received influenza antiviral agents; 29% received treatment ≤ 2 days after illness onset. Forty-eight (38%) patients developed ARDS and 37 (24%) died. Patients with ARDS were more likely to be morbidly obese (36% versus 19%, P=0.04) and patients who died were less likely to have asthma (11% versus 28%, P=0.05). Compared with patients who received treatment ≥ 6 days after illness onset, patients treated ≤ 2 days after illness onset were less likely to develop ARDS (17% versus 37%, P<0.01) or die (7% versus 35%, P<0.01). Among patients hospitalized in an ICU with pH1N1 virus infection, ARDS was a common complication, and one-quarter of patients died. Patients with asthma had less severe outcomes. Early treatment with influenza antiviral agents was likely beneficial, especially when initiated ≤ 2 days after illness onset. Published 2012. This article is a US Government work and is in the public domain in the USA.

Virucidal Influence of Ionic Liquids on Phages P100 and MS2

PubMed Central

Fister, Susanne; Mester, Patrick; Sommer, Julia; Witte, Anna K.; Kalb, Roland; Wagner, Martin; Rossmanith, Peter

2017-01-01

An increasing number of publications describe the potential of ionic liquids (ILs) as novel antimicrobials, antibacterial coatings and even as active pharmaceutical ingredients. Nevertheless, a major research area, notably their impact on viruses, has so far been neglected. Consequently the aim of this study was to examine the effects of ILs on the infectivity of viruses. A systematic analysis to investigate the effects of defined structural elements of ILs on virus activity was performed using 55 ILs. All structure activity relationships (SARs) were tested on the human norovirus surrogate phage MS2 and phage P100 representing non-enveloped DNA viruses. Results demonstrate that IL SAR conclusions, established for prokaryotes and eukaryotes, are not readily applicable to the examined phages. A virus-type-dependent IL influence was also apparent. Overall, four ILs, covering different structural elements, were found to reduce phage P100 infectivity by ≥4 log10 units, indicating a virucidal effect, whereas the highest reduction for phage MS2 was about 3 log10 units. Results indicate that future applications of ILs as virucidal agents will require development of novel SARs and the obtained results serve as a good starting point for future studies. PMID:28883814

GNOSIS: an OH suppression unit for near-infrared spectrographs

NASA Astrophysics Data System (ADS)

Ellis, S. C.; Bland-Hawthorn, J.; Lawrence, J. S.; Bryant, J.; Haynes, R.; Horton, A.; Lee, S.; Leon-Saval, S.; Löhmannsröben, Hans-Gerd; Mladenoff, J.; O'Byrne, J.; Rambold, W.; Roth, M.; Trinh, C.

2010-07-01

GNOSIS is an OH suppression unit to be used in conjunction with existing spectrographs. The OH suppression is achieved using fibre Bragg gratings (FBGs), and will deliver the darkest near-infrared background of any ground-based instrument. Laboratory and on-sky tests demonstrate that FBGs can suppress OH lines by 30dB whilst maintaing > 90% throughput between the lines, resulting in a 4 mag decrease in the background. In the first implementation GNOSIS will feed IRIS2 on the AAT. It will consist of a seven element lenslet array, covering 1.4" on the sky, and will suppress the 103 brightest OH lines between 1.47 and 1.70 μm. Future upgrades will include J-band suppression and implementation on an 8m telescope.

Continual Reintroduction of Human Pandemic H1N1 Influenza A Viruses into Swine in the United States, 2009 to 2014

PubMed Central

Stratton, Jered; Killian, Mary Lea; Janas-Martindale, Alicia; Vincent, Amy L.

2015-01-01

ABSTRACT The diversity of influenza A viruses in swine (swIAVs) presents an important pandemic threat. Knowledge of the human-swine interface is particularly important for understanding how viruses with pandemic potential evolve in swine hosts. Through phylogenetic analysis of contemporary swIAVs in the United States, we demonstrate that human-to-swine transmission of pandemic H1N1 (pH1N1) viruses has occurred continuously in the years following the 2009 H1N1 pandemic and has been an important contributor to the genetic diversity of U.S. swIAVs. Although pandemic H1 and N1 segments had been largely removed from the U.S. swine population by 2013 via reassortment with other swIAVs, these antigens reemerged following multiple human-to-swine transmission events during the 2013-2014 seasonal epidemic. These findings indicate that the six internal gene segments from pH1N1 viruses are likely to be sustained long term in the U.S. swine population, with periodic reemergence of pandemic hemagglutinin (HA) and neuraminidase (NA) segments in association with seasonal pH1N1 epidemics in humans. Vaccinating U.S. swine workers may reduce infection of both humans and swine and in turn limit the role of humans as sources of influenza virus diversity in pigs. IMPORTANCE Swine are important hosts in the evolution of influenza A viruses with pandemic potential. Here, we analyze influenza virus sequence data generated by the U.S. Department of Agriculture's national surveillance system to identify the central role of humans in the reemergence of pandemic H1N1 (pH1N1) influenza viruses in U.S. swine herds in 2014. These findings emphasize the important role of humans as continuous sources of influenza virus diversity in swine and indicate that influenza viruses with pandemic HA and NA segments are likely to continue to reemerge in U.S. swine in association with seasonal pH1N1 epidemics in humans. PMID:25833052

Continual Reintroduction of Human Pandemic H1N1 Influenza A Viruses into Swine in the United States, 2009 to 2014.

PubMed

Nelson, Martha I; Stratton, Jered; Killian, Mary Lea; Janas-Martindale, Alicia; Vincent, Amy L

2015-06-01

The diversity of influenza A viruses in swine (swIAVs) presents an important pandemic threat. Knowledge of the human-swine interface is particularly important for understanding how viruses with pandemic potential evolve in swine hosts. Through phylogenetic analysis of contemporary swIAVs in the United States, we demonstrate that human-to-swine transmission of pandemic H1N1 (pH1N1) viruses has occurred continuously in the years following the 2009 H1N1 pandemic and has been an important contributor to the genetic diversity of U.S. swIAVs. Although pandemic H1 and N1 segments had been largely removed from the U.S. swine population by 2013 via reassortment with other swIAVs, these antigens reemerged following multiple human-to-swine transmission events during the 2013-2014 seasonal epidemic. These findings indicate that the six internal gene segments from pH1N1 viruses are likely to be sustained long term in the U.S. swine population, with periodic reemergence of pandemic hemagglutinin (HA) and neuraminidase (NA) segments in association with seasonal pH1N1 epidemics in humans. Vaccinating U.S. swine workers may reduce infection of both humans and swine and in turn limit the role of humans as sources of influenza virus diversity in pigs. Swine are important hosts in the evolution of influenza A viruses with pandemic potential. Here, we analyze influenza virus sequence data generated by the U.S. Department of Agriculture's national surveillance system to identify the central role of humans in the reemergence of pandemic H1N1 (pH1N1) influenza viruses in U.S. swine herds in 2014. These findings emphasize the important role of humans as continuous sources of influenza virus diversity in swine and indicate that influenza viruses with pandemic HA and NA segments are likely to continue to reemerge in U.S. swine in association with seasonal pH1N1 epidemics in humans. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

The VIRUS data reduction pipeline

NASA Astrophysics Data System (ADS)

Goessl, Claus A.; Drory, Niv; Relke, Helena; Gebhardt, Karl; Grupp, Frank; Hill, Gary; Hopp, Ulrich; Köhler, Ralf; MacQueen, Phillip

2006-06-01

The Hobby-Eberly Telescope Dark Energy Experiment (HETDEX) will measure baryonic acoustic oscillations, first discovered in the Cosmic Microwave Background (CMB), to constrain the nature of dark energy by performing a blind search for Ly-α emitting galaxies within a 200 deg2 field and a redshift bin of 1.8 < z < 3.7. This will be achieved by VIRUS, a wide field, low resolution, 145 IFU spectrograph. The data reduction pipeline will have to extract ~ 35.000 spectra per exposure (~5 million per night, i.e. 500 million in total), perform an astrometric, photometric, and wavelength calibration, and find and classify objects in the spectra fully automatically. We will describe our ideas how to achieve this goal.

Pathogenicity of West Nile virus and response to vaccination in sandhill cranes (Grus canadensis) using a killed vaccine.

PubMed

Olsen, Glenn H; Miller, Kimberli J; Docherty, Douglas E; Bochsler, Valerie S; Sileo, Louis

2009-06-01

West Nile virus was introduced into the United States in the vicinity of New York, New York, USA in 1999. The virus has since killed large numbers of birds nationwide, especially, but not limited to, crows (Corvus brachyrhinchos). One sandhill crane (Grus canadensis) at the Bridgeport Zoo (Bridgeport, Connecticut, USA) reportedly died from West Nile virus, so sandhill cranes and endangered whooping cranes (Grus americana), both in the wild and in captive breeding colonies at United States Geological Service (USGS) Patuxent Wildlife Research Center (Laurel, Maryland, USA) were considered at risk. A killed vaccine in sandhill cranes was evaluated by vaccinating and then challenging these cranes with live West Nile virus. No sandhill cranes inoculated with the killed vaccine developed significant titers when compared with unvaccinated controls. No sandhill cranes inoculated with the vaccine and challenged with the virus died from West Nile virus infection. In addition, no unvaccinated challenged sandhill cranes died. However, 2 days postchallenge, vaccinated cranes had significantly less viremia (P < 0.05) than unvaccinated cranes. Seven days postchallenge vaccinated cranes had significantly less cloacal shedding of the virus (P < 0.05) than unvaccinated cranes and significantly less weight loss (P < 0.05) as compared with unvaccinated cranes. Vaccinated sandhill cranes developed significantly higher titers 14 days postchallenge and were viremic for shorter periods of time after challenge than unvaccinated individuals. Unvaccinated challenged cranes had glial cell aggregates in both the brain and brain stem areas, and this was not observed in vaccinated challenged cranes or in vaccinated unchallenged cranes.

Pathogenicity of West Nile virus and response to vaccination in sandhill cranes (Grus canadensis) using a killed vaccine

USGS Publications Warehouse

Olsen, Glenn H.; Miller, Kimberli J.; Docherty, Douglas E.; Shearn-Bochsler, Valerie I.; Sileo, Louis

2009-01-01

West Nile virus was introduced into the United States in the vicinity of New York, New York, USA in 1999. The virus has since killed large numbers of birds nationwide, especially, but not limited to, crows (Corvus brachyrhinchos). One sandhill crane (Grus canadensis) at the Bridgeport Zoo (Bridgeport, Connecticut, USA) reportedly died from West Nile virus, so sandhill cranes and endangered whooping cranes (Grus americana), both in the wild and in captive breeding colonies at United States Geological Service (USGS) Patuxent Wildlife Research Center (Laurel, Maryland, USA) were considered at risk. A killed vaccine in sandhill cranes was evaluated by vaccinating and then challenging these cranes with live West Nile virus. No sandhill cranes inoculated with the killed vaccine developed significant titers when compared with unvaccinated controls. No sandhill cranes inoculated with the vaccine and challenged with the virus died from West Nile virus infection. In addition, no unvaccinated challenged sandhill cranes died. However, 2 days postchallenge, vaccinated cranes had significantly less viremia (P < 0.05) than unvaccinated cranes. Seven days postchallenge vaccinated cranes had significantly less cloacal shedding of the virus (P < 0.05) than unvaccinated cranes and significantly less weight loss (P < 0.05) as compared with unvaccinated cranes. Vaccinated sandhill cranes developed significantly higher titers 14 days postchallenge and were viremic for shorter periods of time after challenge than unvaccinated individuals. Unvaccinated challenged cranes had glial cell aggregates in both the brain and brain stem areas, and this was not observed in vaccinated challenged cranes or in vaccinated unchallenged cranes.

VizieR Online Data Catalog: PS1 z>5.6 quasars follow-up (Banados+, 2016)

NASA Astrophysics Data System (ADS)

Banados, E.; Venemans, B. P.; Decarli, R.; Farina, E. P.; Mazzucchelli, C.; Walter, F.; Fan, X.; Stern, D.; Schlafly, E.; Chambers, K. C.; Rix, H.-W.; Jiang, L.; McGreer, I.; Simcoe, R.; Wang, F.; Yang, J.; Morganson, E.; De Rosa, G.; Greiner, J.; Balokovic, M.; Burgett, W. S.; Cooper, T.; Draper, P. W.; Flewelling, H.; Hodapp, K. W.; Jun, H. D.; Kaiser, N.; Kudritzki, R.-P.; Magnier, E. A.; Metcalfe, N.; Miller, D.; Schindler, J.-T.; Tonry, J. L.; Wainscoat, R. J.; Waters, C.; Yang, Q.

2017-01-01

The photometric follow-up observations were carried out over different observing runs and different instruments. We obtained optical and near-infrared images with the MPG 2.2m/GROND, New Technology Telescope (NTT)/EFOSC2, NTT/SofI, Calar Alto (CAHA) 3.5m/Omega2000, CAHA 2.2m/CAFOS21, MMT/SWIRC), and du Pont/Retrocam; see Table 1 for details of the observations and filters used. A spectroscopic campaign was carried out using several instruments at different telescopes: EFOSC2 at the NTT telescope in La Silla, the Focal Reducer / Low-Dispersion Spectrograph 2 (FORS2) at the Very Large Telescope (VLT), the Folded-Port Infrared Echellette (FIRE) spectrometer and the Low-Dispersion Survey Spectrograph (LDSS3) at the Baade and Clay Telescopes at Las Campanas Observatory, the Low-Resolution Imaging Spectrometer (LRIS) at the Keck I 10m Telescope on Mauna Kea, the Double Spectrograph (DBSP) on the 200 inch (5m) Hale Telescope at Palomar Observatory (P200), the Red-Channel Spectrograph on the 6.5m MMT Telescope, the Cassegrain TWIN Spectrograph at the 3.5m Calar Alto Telescope (CAHA 3.5m), and the Multi-object Double Spectrograph (MODS) and LUCI spectrograph at the Large Binocular Telescope (LBT). The details of the spectroscopic observations of the PS1-discovered quasars are shown in Table 5. (10 data files).

CARMENES: an overview six months after first light

NASA Astrophysics Data System (ADS)

Quirrenbach, A.; Amado, P. J.; Caballero, J. A.; Mundt, R.; Reiners, A.; Ribas, I.; Seifert, W.; Abril, M.; Aceituno, J.; Alonso-Floriano, F. J.; Anwand-Heerwart, H.; Azzaro, M.; Bauer, F.; Barrado, D.; Becerril, S.; Bejar, V. J. S.; Benitez, D.; Berdinas, Z. M.; Brinkmöller, M.; Cardenas, M. C.; Casal, E.; Claret, A.; Colomé, J.; Cortes-Contreras, M.; Czesla, S.; Doellinger, M.; Dreizler, S.; Feiz, C.; Fernandez, M.; Ferro, I. M.; Fuhrmeister, B.; Galadi, D.; Gallardo, I.; Gálvez-Ortiz, M. C.; Garcia-Piquer, A.; Garrido, R.; Gesa, L.; Gómez Galera, V.; González Hernández, J. I.; Gonzalez Peinado, R.; Grözinger, U.; Guàrdia, J.; Guenther, E. W.; de Guindos, E.; Hagen, H.-J.; Hatzes, A. P.; Hauschildt, P. H.; Helmling, J.; Henning, T.; Hermann, D.; Hernández Arabi, R.; Hernández Castaño, L.; Hernández Hernando, F.; Herrero, E.; Huber, A.; Huber, K. F.; Huke, P.; Jeffers, S. V.; de Juan, E.; Kaminski, A.; Kehr, M.; Kim, M.; Klein, R.; Klüter, J.; Kürster, M.; Lafarga, M.; Lara, L. M.; Lamert, A.; Laun, W.; Launhardt, R.; Lemke, U.; Lenzen, R.; Llamas, M.; Lopez del Fresno, M.; López-Puertas, M.; López-Santiago, J.; Lopez Salas, J. F.; Magan Madinabeitia, H.; Mall, U.; Mandel, H.; Mancini, L.; Marin Molina, J. A.; Maroto Fernández, D.; Martín, E. L.; Martín-Ruiz, S.; Marvin, C.; Mathar, R. J.; Mirabet, E.; Montes, D.; Morales, J. C.; Morales Muñoz, R.; Nagel, E.; Naranjo, V.; Nowak, G.; Palle, E.; Panduro, J.; Passegger, V. M.; Pavlov, A.; Pedraz, S.; Perez, E.; Pérez-Medialdea, D.; Perger, M.; Pluto, M.; Ramón, A.; Rebolo, R.; Redondo, P.; Reffert, S.; Reinhart, S.; Rhode, P.; Rix, H.-W.; Rodler, F.; Rodríguez, E.; Rodríguez López, C.; Rohloff, R. R.; Rosich, A.; Sanchez Carrasco, M. A.; Sanz-Forcada, J.; Sarkis, P.; Sarmiento, L. F.; Schäfer, S.; Schiller, J.; Schmidt, C.; Schmitt, J. H. M. M.; Schöfer, P.; Schweitzer, A.; Shulyak, D.; Solano, E.; Stahl, O.; Storz, C.; Tabernero, H. M.; Tala, M.; Tal-Or, L.; Ulbrich, R.-G.; Veredas, G.; Vico Linares, J. I.; Vilardell, F.; Wagner, K.; Winkler, J.; Zapatero Osorio, M.-R.; Zechmeister, M.; Ammler-von Eiff, M.; Anglada-Escudé, G.; del Burgo, C.; Garcia-Vargas, M. L.; Klutsch, A.; Lizon, J.-L.; Lopez-Morales, M.; Ofir, A.; Pérez-Calpena, A.; Perryman, M. A. C.; Sánchez-Blanco, E.; Strachan, J. B. P.; Stürmer, J.; Suárez, J. C.; Trifonov, T.; Tulloch, S. M.; Xu, W.

2016-08-01

The CARMENES instrument is a pair of high-resolution (R> 80,000) spectrographs covering the wavelength range from 0.52 to 1.71 μm, optimized for precise radial velocity measurements. It was installed and commissioned at the 3.5m telescope of the Calar Alto observatory in Southern Spain in 2015. The first large science program of CARMENES is a survey of 300 M dwarfs, which started on Jan 1, 2016. We present an overview of all subsystems of CARMENES (front end, fiber system, visible-light spectrograph, near-infrared spectrograph, calibration units, etalons, facility control, interlock system, instrument control system, data reduction pipeline, data flow, and archive), and give an overview of the assembly, integration, verification, and commissioning phases of the project. We show initial results and discuss further plans for the scientific use of CARMENES.

The boot software of the control unit of the near infrared spectrograph of the Euclid space mission: technical specification

NASA Astrophysics Data System (ADS)

Gómez-Sáenz-de-Tejada, Jaime; Toledo-Moreo, Rafael; Colodro-Conde, Carlos; Pérez-Lizán, David; Fernández-Conde, Jesús; Sánchez-Prieto, Sebastián.

2016-07-01

The Near Infrared Spectrograph and Photometer (NISP) is one of the instruments on board the ESA EUCLID mission. The Boot Software (BSW) is in charge of initialization and communications after a reset occurs at hard- ware level. The Universidad Politecnica de Cartagena and Instituto de Astrofisica de Canarias are responsible of the Instrument Control Unit of the NISP (NI-ICU) in the Euclid Consortium. The NI-ICU BSW is developed by Universidad de Alcaĺa, and its main functions are: communication with the S/C for memory management, self-tests and start of a patchable Application Software (ASW). This paper presents the NI-ICU BSW status of definition and design at the end of the Technical Specification phase.

VizieR Online Data Catalog: PTF 12dam & iPTF 13dcc follow-up (Vreeswijk+, 2017)

NASA Astrophysics Data System (ADS)

Vreeswijk, P. M.; Leloudas, G.; Gal-Yam, A.; De Cia, A.; Perley, D. A.; Quimby, R. M.; Waldman, R.; Sullivan, M.; Yan, L.; Ofek, E. O.; Fremling, C.; Taddia, F.; Sollerman, J.; Valenti, S.; Arcavi, I.; Howell, D. A.; Filippenko, A. V.; Cenko, S. B.; Yaron, O.; Kasliwal, M. M.; Cao, Y.; Ben-Ami, S.; Horesh, A.; Rubin, A.; Lunnan, R.; Nugent, P. E.; Laher, R.; Rebbapragada, U. D.; Wozniak, P.; Kulkarni, S. R.

2017-08-01

Spectroscopic follow-up observations of PTF 12dam were performed with the Kast Spectrograph at the Lick 3m Shane telescope, and the Low Resolution Imaging Spectrograph (LRIS) at the Keck-I 10m telescope (on Mauna Kea, Hawaii) on 2012 May 20, 21, and 22. The full spectroscopic sequence of PTF 12dam will be presented by R. M. Quimby et al. (2016, in preparation). PTF 12dam was imaged with the Palomar Oschin 48 inch (P48) (i)PTF survey telescope in the Mould R filter, the Palomar 60 inch (P60) and CCD camera in Johnson B and Sloan Digital Sky Survey (SDSS) gri, the Las Cumbres Observatory Global Telescope Network (LCOGT) in SDSS r, and LRIS mounted on the 10m Keck-I telescope in Rs. iPTF 13dcc has not had any exposure in the literature yet. It was flagged as a transient source on 2013 August 29. Spectroscopic follow-up observations spanning 2013 Nov 26 to 2014 Jan 16 were performed with the Double Spectrograph (DBSP) at the Palomar 200 inch (P200), LRIS at Keck-I, and the Inamori-Magellan Areal Camera & Spectrograph (IMACS) at the Magellan Baade telescope, showing iPTF 13dcc to be an SLSN at z=0.4305. iPTF 13dcc was imaged with the P48 Oschin (i)PTF survey telescope in the Mould R filter, the P60 in SDSS gri, the 4.3m Discovery Channel Telescope (DCT, at Lowell Observatory, Arizona) with the Large Monolithic Imager (LMI) in SDSS ri, and finally with the Hubble Space Telescope (HST) Advanced Camera for Surveys (ACS) Wide-Field Camera using filter F625W (under program GO-13858; P.I. A. De Cia). (3 data files).

Continual re-introduction of human pandemic H1N1 influenza A viruses into US swine, 2009-2014

USDA-ARS?s Scientific Manuscript database

Human-to-swine transmission of pandemic H1N1 influenza viruses (pH1N1) increased the genetic diversity of influenza A viruses in swine (swIAVs) globally and is linked to the emergence of new pandemic threats, including H3N2v variants. Through phylogenetic analysis of contemporary swIAVs in the Unit...

Design and early performance of IGRINS (Immersion Grating Infrared Spectrometer)

NASA Astrophysics Data System (ADS)

Park, Chan; Jaffe, Daniel T.; Yuk, In-Soo; Chun, Moo-Young; Pak, Soojong; Kim, Kang-Min; Pavel, Michael; Lee, Hanshin; Oh, Heeyoung; Jeong, Ueejeong; Sim, Chae Kyung; Lee, Hye-In; Nguyen Le, Huynh Anh; Strubhar, Joseph; Gully-Santiago, Michael; Oh, Jae Sok; Cha, Sang-Mok; Moon, Bongkon; Park, Kwijong; Brooks, Cynthia; Ko, Kyeongyeon; Han, Jeong-Yeol; Nah, Jakyoung; Hill, Peter C.; Lee, Sungho; Barnes, Stuart; Yu, Young Sam; Kaplan, Kyle; Mace, Gregory; Kim, Hwihyun; Lee, Jae-Joon; Hwang, Narae; Park, Byeong-Gon

2014-07-01

The Immersion Grating Infrared Spectrometer (IGRINS) is a compact high-resolution near-infrared cross-dispersed spectrograph whose primary disperser is a silicon immersion grating. IGRINS covers the entire portion of the wavelength range between 1.45 and 2.45μm that is accessible from the ground and does so in a single exposure with a resolving power of 40,000. Individual volume phase holographic (VPH) gratings serve as cross-dispersing elements for separate spectrograph arms covering the H and K bands. On the 2.7m Harlan J. Smith telescope at the McDonald Observatory, the slit size is 1ʺ x 15ʺ and the plate scale is 0.27ʺ pixel. The spectrograph employs two 2048 x 2048 pixel Teledyne Scientific and Imaging HAWAII-2RG detectors with SIDECAR ASIC cryogenic controllers. The instrument includes four subsystems; a calibration unit, an input relay optics module, a slit-viewing camera, and nearly identical H and K spectrograph modules. The use of a silicon immersion grating and a compact white pupil design allows the spectrograph collimated beam size to be only 25mm, which permits a moderately sized (0.96m x 0.6m x 0.38m) rectangular cryostat to contain the entire spectrograph. The fabrication and assembly of the optical and mechanical components were completed in 2013. We describe the major design characteristics of the instrument including the system requirements and the technical strategy to meet them. We also present early performance test results obtained from the commissioning runs at the McDonald Observatory.

MEGARA spectrograph optics

NASA Astrophysics Data System (ADS)

Carrasco, E.; Sánchez-Blanco, E.; García-Vargas, M. L.; Gil de Paz, A.; Páez, G.; Gallego, J.; Sánchez, F. M.; Vílchez, J. M.

2012-09-01

MEGARA is the next optical Integral-Field Unit (IFU) and Multi-Object Spectrograph (MOS) for Gran Telescopio Canarias. The instrument offers two IFUs plus a Multi-Object Spectroscopy (MOS) mode: a large compact bundle covering 12.5 arcsec x 11.3 arcsec on sky with 100 μm fiber-core; a small compact bundle, of 8.5 arcsec x 6.7 arcsec with 70 μm fiber-core and a fiber MOS positioner that allows to place up to 100 mini-bundles, 7 fibers each, with 100 μm fiber-core, within a 3.5 arcmin x 3.5 arcmin field of view, around the two IFUs. The fibers, organized in bundles, end in the pseudo-slit plate, which will be placed at the entrance focal plane of the MEGARA spectrograph. The large IFU and MOS modes will provide intermediate to high spectral resolutions, R=6800-17000. The small IFU mode will provide R=8000-20000. All these resolutions are possible thanks to a spectrograph design based in the used of volume phase holographic gratings in combination with prisms to keep fixed the collimator and camera angle. The MEGARA optics is composed by a total of 53 large optical elements per spectrograph: the field lens, the collimator and the camera lenses plus the complete set of pupil elements including holograms, windows and prisms. INAOE, a partner of the GTC and a partner of MEGARA consortium, is responsible of the optics manufacturing and tests. INAOE will carry out this project working in an alliance with CIO. This paper summarizes the status of MEGARA spectrograph optics at the Preliminary Design Review, held on March 2012.

GNOSIS: The First Fiber Bragg Grating-based OH Suppression Unit

NASA Astrophysics Data System (ADS)

Trinh, Christopher; Ellis, S. C.; Bland-Hawthorn, J.; Lawrence, J. S.; Horton, A. J.; Leon-Saval, S. G.; Shortridge, K.; Bryant, J.; Case, S.; Colless, M.; Couch, W.; Freeman, K. C.; Löhmannsröben, H.; Gers, L.; Glazebrook, K.; Haynes, R.; Lee, S.; O'Byrne, J.; Miziarski, S.; Roth, M. M.; Schmidt, B.; Tinney, C. G.; Zheng, J.

2013-01-01

The sky background is over 1000 times brighter in the near-infrared (NIR) than in the visible placing severe limitations on our ability to study the redshifted light from the distant objects formed in the early Universe from the ground. It is well-known that 98% of the NIR background comes from the forest of bright and highly variable emission lines of atmospheric hydroxyl (OH) molecules. Unfortunately, astronomers have been unable to effectively remove this background from their data. We present the first OH suppression unit, GNOSIS, to utilize fiber Bragg gratings (FBGs). Simple FBGs are optical fibers with a periodic refractive index modulation imprinted within the fiber core, which induces a strong reflection in a narrow 0.2 nm) stopband. GNOSIS utilizes “OH suppression fibers” with a complex aperiodic refractive index modulation capable of removing the 103 brightest OH doublets between 1470 and 1700 nm by up 30 dB before dispersion and in a manner purely dependent on wavelength. The OH suppression fibers have high throughput 60%) and over 90% of the H band is available for spectroscopy. OH suppression units like GNOSIS may be utilized with any NIR telescope and spectrograph combination, but we commissioned GNOSIS at the 3.9-meter Anglo-Australian Telescope with the IRIS2 spectrograph for our first demonstration. Commissioning reveals excellent suppression performance. Approximately 78% of the OH lines were suppressed at the target level or greater. GNOSIS reduces the integrated background between 1500 and 1700 nm by a factor of ~ 9 but the signal-to-noise ratio is about the same as standard long-slit IRIS2 observations due to retrofitting to an un-optimized spectrograph. Nevertheless, if paired with a fiber-optimized spectrograph FBG OH suppression technology shows great promise for high sensitivity NIR spectroscopy at moderate to low resolutions from the ground.

RNAi mediated, stable resistance to Triticum mosaic virus in wheat

USDA-ARS?s Scientific Manuscript database

Triticum mosaic virus (TriMV), discovered in 2006, affects wheat production systems in the Great Plains of the United States. There are no available TriMV resistant commercial varieties. RNA interference (RNAi) was evaluated as an alternative strategy to generate resistance to TriMV. An RNAi pANDA...

Spectroscopic classification of Gaia17apq and Gaia17apv with Double Spectrograph on Palomar 200-inch telescope

NASA Astrophysics Data System (ADS)

Blagorodnova, N.; Adams, S.

2017-03-01

We report the classification of Gaia17apq and Gaia17apv (SN2017cao and SN2017cat), discovered by the Gaia ESA survey. The observations were performed on UT 2017-03-16 with the Double Spectrograph (DBSP; range 350-1000nm, spectral resolution R 4000) on Palomar 200-inch (P200) telescope.

Development of the fibre positioning unit of MOONS

NASA Astrophysics Data System (ADS)

Montgomery, David; Atkinson, David; Beard, Stephen; Cochrane, William; Drass, Holger; Guinouard, Isabelle; Lee, David; Taylor, William; Rees, Phil; Watson, Steve

2016-08-01

The Multi-Object Optical and Near-Infrared Spectrograph (MOONS) will exploit the full 500 square arcmin field of view offered by the Nasmyth focus of the Very Large Telescope and will be equipped with two identical triple arm cryogenic spectrographs covering the wavelength range 0.64μm-1.8μm, with a multiplex capability of over 1000 fibres. This can be configured to produce spectra for chosen targets and have close proximity sky subtraction if required. The system will have both a medium resolution (R 4000-6000) mode and a high resolution (R 20000) mode. The fibre positioning units are used to position each fibre independently in order to pick off each sub field of 1.0" within a circular patrol area of 85" on sky (50mm physical diameter). The nominal physical separation between FPUs is 25mm allowing a 100% overlap in coverage between adjacent units. The design of the fibre positioning units allows parallel and rapid reconfiguration between observations. The kinematic geometry is such that pupil alignment is maintained over the patrol area. This paper presents the design of the Fibre Positioning Units at the preliminary design review and the results of verification testing of the advanced prototypes.

Water system virus detection

NASA Technical Reports Server (NTRS)

Fraser, A. S.; Wells, A. F.; Tenoso, H. J.

1975-01-01

A monitoring system developed to test the capability of a water recovery system to reject the passage of viruses into the recovered water is described. A nonpathogenic marker virus, bacteriophage F2, is fed into the process stream before the recovery unit and the reclaimed water is assayed for its presence. Detection of the marker virus consists of two major components, concentration and isolation of the marker virus, and detection of the marker virus. The concentration system involves adsorption of virus to cellulose acetate filters in the presence of trivalent cations and low pH with subsequent desorption of the virus using volumes of high pH buffer. The detection of the virus is performed by a passive immune agglutination test utilizing specially prepared polystyrene particles. An engineering preliminary design was performed as a parallel effort to the laboratory development of the marker virus test system. Engineering schematics and drawings of a fully functional laboratory prototype capable of zero-G operation are presented. The instrument consists of reagent pump/metering system, reagent storage containers, a filter concentrator, an incubation/detector system, and an electronic readout and control system.

Opto-mechanical design of an image slicer for the GRIS spectrograph at GREGOR

NASA Astrophysics Data System (ADS)

Vega Reyes, N.; Esteves, M. A.; Sánchez-Capuchino, J.; Salaun, Y.; López, R. L.; Gracia, F.; Estrada Herrera, P.; Grivel, C.; Vaz Cedillo, J. J.; Collados, M.

2016-07-01

An image slicer has been proposed for the Integral Field Spectrograph [1] of the 4-m European Solar Telescope (EST) [2] The image slicer for EST is called MuSICa (Multi-Slit Image slicer based on collimator-Camera) [3] and it is a telecentric system with diffraction limited optical quality offering the possibility to obtain high resolution Integral Field Solar Spectroscopy or Spectro-polarimetry by coupling a polarimeter after the generated slit (or slits). Considering the technical complexity of the proposed Integral Field Unit (IFU), a prototype has been designed for the GRIS spectrograph at GREGOR telescope at Teide Observatory (Tenerife), composed by the optical elements of the image slicer itself, a scanning system (to cover a larger field of view with sequential adjacent measurements) and an appropriate re-imaging system. All these subsystems are placed in a bench, specially designed to facilitate their alignment, integration and verification, and their easy installation in front of the spectrograph. This communication describes the opto-mechanical solution adopted to upgrade GRIS while ensuring repeatability between the observational modes, IFU and long-slit. Results from several tests which have been performed to validate the opto-mechanical prototypes are also presented.

Evolution of Novel Reassortant A/H3N2 Influenza Viruses in North American Swine and Humans, 2009–2011

PubMed Central

Vincent, Amy L.; Kitikoon, Pravina; Holmes, Edward C.; Gramer, Marie R.

2012-01-01

Novel H3N2 influenza viruses (H3N2v) containing seven genome segments from swine lineage triple-reassortant H3N2 viruses and a 2009 pandemic H1N1 (H1N1pdm09) matrix protein segment (pM) were isolated from 12 humans in the United States between August and December 2011. To understand the evolution of these novel H3N2 viruses in swine and humans, we undertook a phylogenetic analysis of 674 M sequences and 388 HA and NA sequences from influenza viruses isolated from North American swine during 2009–2011, as well as HA, NA, and M sequences from eight H3N2v viruses isolated from humans. We identified 34 swine influenza viruses (termed rH3N2p) with the same combination of H3, N2, and pM segments as the H3N2v viruses isolated from humans. Notably, these rH3N2p viruses were generated in swine via reassortment events between H3N2 viruses and the pM segment approximately 4 to 10 times since 2009. The pM segment has also reassorted with multiple distinct lineages of H1 virus, especially H1δ viruses. Importantly, the N2 segment of all H3N2v viruses isolated from humans is derived from a genetically distinct N2 lineage that has circulated in swine since being acquired by reassortment with seasonal human H3N2 viruses in 2001–2002, rather than from the N2 that is associated with the 1998 H3N2 swine lineage. The identification of this N2 variant may have implications for influenza vaccine design and the potential pandemic threat of H3N2v to human age groups with differing levels of prior exposure and immunity. PMID:22696653

HIV-Specific Functional Antibody Responses in Breast Milk Mirror Those in Plasma and Are Primarily Mediated by IgG Antibodies ▿

PubMed Central

Fouda, Genevieve G.; Yates, Nicole L.; Pollara, Justin; Shen, Xiaoying; Overman, Glenn R.; Mahlokozera, Tatenda; Wilks, Andrew B.; Kang, Helen H.; Salazar-Gonzalez, Jesus F.; Salazar, Maria G.; Kalilani, Linda; Meshnick, Steve R.; Hahn, Beatrice H.; Shaw, George M.; Lovingood, Rachel V.; Denny, Thomas N.; Haynes, Barton; Letvin, Norman L.; Ferrari, Guido; Montefiori, David C.; Tomaras, Georgia D.; Permar, Sallie R.

2011-01-01

Despite months of mucosal virus exposure, the majority of breastfed infants born to HIV-infected mothers do not become infected, raising the possibility that immune factors in milk inhibit mucosal transmission of HIV. HIV Envelope (Env)-specific antibodies are present in the milk of HIV-infected mothers, but little is known about their virus-specific functions. In this study, HIV Env-specific antibody binding, autologous and heterologous virus neutralization, and antibody-dependent cell cytotoxicity (ADCC) responses were measured in the milk and plasma of 41 HIV-infected lactating women. Although IgA is the predominant antibody isotype in milk, HIV Env-specific IgG responses were higher in magnitude than HIV Env-specific IgA responses in milk. The concentrations of anti-HIV gp120 IgG in milk and plasma were directly correlated (r = 0.75; P < 0.0001), yet the response in milk was 2 logarithm units lower than in plasma. Similarly, heterologous virus neutralization (r = 0.39; P = 0.010) and ADCC activity (r = 0.64; P < 0.0001) in milk were directly correlated with that in the systemic compartment but were 2 log units lower in magnitude. Autologous neutralization was rarely detected in milk. Milk heterologous virus neutralization titers correlated with HIV gp120 Env-binding IgG responses but not with IgA responses (r = 0.71 and P < 0.0001, and r = 0.17 and P = 0.30). Moreover, IgGs purified from milk and plasma had equal neutralizing potencies against a tier 1 virus (r = 0.65; P < 0.0001), whereas only 1 out of 35 tested non-IgG milk fractions had detectable neutralization. These results suggest that plasma-derived IgG antibodies mediate the majority of the low-level HIV neutralization and ADCC activity in breast milk. PMID:21734046

Development of a slicer integral field unit for the existing optical imaging spectrograph FOCAS

NASA Astrophysics Data System (ADS)

Ozaki, Shinobu; Tanaka, Yoko; Hattori, Takashi; Mitsui, Kenji; Fukusima, Mitsuhiro; Okada, Norio; Obuchi, Yoshiyuki; Miyazaki, Satoshi; Yamashita, Takuya

2012-09-01

We are developing an integral field unit (IFU) with an image slicer for the existing optical imaging spectrograph, Faint Object Camera And Spectrograph (FOCAS), on the Subaru Telescope. Basic optical design has already finished. The slice width is 0.4 arcsec, slice number is 24, and field of view is 13.5x 9.6 arcsec. Sky spectra separated by about 3 arcmin from an object field can be simultaneously obtained, which allows us precise background subtraction. The IFU will be installed as a mask plate and set by the mask exchanger mechanism of FOCAS. Slice mirrors, pupil mirrors and slit mirrors are all made of glass, and their mirror surfaces are fabricated by polishing. Multilayer dielectric reflective coating with high reflectivity (< 98%) is made on each mirror surface. Slicer IFU consists of many mirrors which need to be arraigned with high accuracy. For such alignment, we will make alignment jigs and mirror holders made with high accuracy. Some pupil mirrors need off-axis ellipsoidal surfaces to reduce aberration. We are conducting some prototyping works including slice mirrors, an off-axis ellipsoidal surface, alignment jigs and a mirror support. In this paper, we will introduce our project and show those prototyping works.

Expression, purification and crystallization of a lyssavirus matrix (M) protein

PubMed Central

Assenberg, René; Delmas, Olivier; Graham, Stephen C.; Verma, Anil; Berrow, Nick; Stuart, David I.; Owens, Raymond J.; Bourhy, Hervé; Grimes, Jonathan M.

2008-01-01

The matrix (M) proteins of lyssaviruses (family Rhabdoviridae) are crucial to viral morphogenesis as well as in modulating replication and transcription of the viral genome. To date, no high-resolution structural information has been obtained for full-length rhabdovirus M. Here, the cloning, expression and purification of the matrix proteins from three lyssaviruses, Lagos bat virus (LAG), Mokola virus and Thailand dog virus, are described. Crystals have been obtained for the full-length M protein from Lagos bat virus (LAG M). Successful crystallization depended on a number of factors, in particular the addition of an N-terminal SUMO fusion tag to increase protein solubility. Diffraction data have been recorded from crystals of native and selenomethionine-labelled LAG M to 2.75 and 3.0 Å resolution, respectively. Preliminary analysis indicates that these crystals belong to space group P6122 or P6522, with unit-cell parameters a = b = 56.9–57.2, c = 187.9–188.6 Å, consistent with the presence of one molecule per asymmetric unit, and structure determination is currently in progress. PMID:18391421

Evolution of H3N2v viruses in North American swine and humans, 2009-2011

USDA-ARS?s Scientific Manuscript database

Novel H3N2 influenza viruses (H3N2v) containing seven genome segments from swine-lineage triple reassortant H3N2 viruses and a 2009 pandemic H1N1 (H1N1pdm09) matrix protein segment (pM) have been isolated from 12 humans in the United States between August – December 2011. To understand the evolution...

Analysis of the resistance-breaking ability of different beet necrotic yellow vein virus isolates loaded into a single Polymyxa betae population in soil.

PubMed

Bornemann, Kathrin; Varrelmann, Mark

2011-06-01

The genome of most Beet necrotic yellow vein virus (BNYVV) isolates is comprised of four RNAs. The ability of certain isolates to overcome Rz1-mediated resistance in sugar beet grown in the United States and Europe is associated with point mutations in the pathogenicity factor P25. When the virus is inoculated mechanically into sugar beet roots at high density, the ability depends on an alanine to valine substitution at P25 position 67. Increased aggressiveness is shown by BNYVV P type isolates, which carry an additional RNA species that encodes a second pathogenicity factor, P26. Direct comparison of aggressive isolates transmitted by the vector, Polymyxa betae, has been impossible due to varying population densities of the vector and other soilborne pathogens that interfere with BNYVV infection. Mechanical root inoculation and subsequent cultivation in soil that carried a virus-free P. betae population was used to load P. betae with three BNYVV isolates: a European A type isolate, an American A type isolate, and a P type isolate. Resistance tests demonstrated that changes in viral aggressiveness towards Rz1 cultivars were independent of the vector population. This method can be applied to the study of the synergism of BNYVV with other P. betae-transmitted viruses.

Early-life status epilepticus acutely impacts select quantitative and qualitative features of neonatal vocalization behavior: Spectrographic and temporal characterizations in C57BL/6 mice.

PubMed

Reynolds, Conner D; Nolan, Suzanne O; Huebschman, Jessica L; Hodges, Samantha L; Lugo, Joaquin N

2017-07-01

Early-life seizures are known to cause long-term deficits in social behavior, learning, and memory, however little is known regarding their acute impact. Ultrasonic vocalization (USV) recordings have been developed as a tool for investigating early communicative deficits in mice. Previous investigation from our lab found that postnatal day (PD) 10 seizures cause male-specific suppression of 50-kHz USVs on PD12 in 129 SvEvTac mouse pups. The present study extends these findings by spectrographic characterization of USVs following neonatal seizures. On PD10, male C57BL/6 pups were administered intraperitoneal injections of kainic acid or physiological saline. On PD12, isolation-induced recordings were captured using a broad-spectrum ultrasonic microphone. Status epilepticus significantly suppressed USV quantity (p=0.001) and total duration (p<0.05). Seizure pups also utilized fewer complex calls than controls (p<0.05). There were no changes in call latency or inter-call intervals. Spectrographic analysis revealed increased peak amplitude for complex, downward, short, two-syllable, and upward calls, as well as reduced mean duration for short and two-syllable calls in seizure mice. This investigation provides the first known spectrographic characterization of USVs following early-life seizures. These findings also enhance evidence for USVs as an indicator of select communicative impairment. Copyright © 2017 Elsevier Inc. All rights reserved.

The BUSS spectrum of Beta Lyrae. [Balloon-borne Ultraviolet Stellar Spectrograph

NASA Technical Reports Server (NTRS)

Hack, M.; Sahade, J.; De Jager, C.; Kondo, Y.

1983-01-01

The spectrum of Beta Lyrae from about 1975 to 3010 A taken with the Balloon-borne ultraviolet Stellar Spectrograph experiment in May 1976 at phase 0.61 P is analyzed. Results show the presence of N II semi-forbidden emission and provide evidence for about the same location, in the outer envelope of the system, of the layers responsible for the resonance Mg II doublet emissions and for the "narrow" H-alpha emission. In addition, three sets of absorption lines, P Cygni profiles of Fe III and broad Beals Type III emissions of Mg II, are found to be present.

Silicates in Alien Asteroids

NASA Technical Reports Server (NTRS)

2009-01-01

This plot of data from NASA's Spitzer Space Telescopes shows that asteroid dust around a dead 'white dwarf' star contains silicates a common mineral on Earth. The data were taken primarily by Spitzer's infrared spectrograph, an instrument that breaks light apart into its basic constituents. The yellow dots show averaged data from the spectrograph, while the orange triangles show older data from Spitzer's infrared array camera. The white dwarf is called GD 40.

Spectroscopic classification of PS17chm with Double Spectrograph on Palomar 200-inch telescope

NASA Astrophysics Data System (ADS)

Blagorodnova, N.; Kupfer, T.; Burdge, K.; Kasliwal, M.; Adams, S.

2017-04-01

We report the classification of PS17chm, discovered by the by the Pan-STARRS Survey for Transients (see Chambers et al. 2016, arXiv:1612.05560, and http://pswww.ifa.hawaii.edu ). The observations were performed on UT 2017-04-19 with the Double Spectrograph (DBSP; range 350-1000nm, spectral resolution R 4000) on Palomar 200-inch (P200) telescope.

Using a Novel Partitivirus in Pseudogymnoascus destructans to Understand the Epidemiology of White-Nose Syndrome

PubMed Central

2016-01-01

White-nose syndrome is one of the most lethal wildlife diseases, killing over 5 million North American bats since it was first reported in 2006. The causal agent of the disease is a psychrophilic filamentous fungus, Pseudogymnoascus destructans. The fungus is widely distributed in North America and Europe and has recently been found in some parts of Asia, but interestingly, no mass mortality is observed in European or Asian bats. Here we report a novel double-stranded RNA virus found in North American isolates of the fungus and show that the virus can be used as a tool to study the epidemiology of White-nose syndrome. The virus, termed Pseudogymnoascus destructans partitivirus-pa, contains 2 genomic segments, dsRNA 1 and dsRNA 2 of 1.76 kbp and 1.59 kbp respectively, each possessing a single open reading frame, and forms isometric particles approximately 30 nm in diameter, characteristic of the genus Gammapartitivirus in the family Partitiviridae. Phylogenetic analysis revealed that the virus is closely related to Penicillium stoloniferum virus S. We were able to cure P. destructans of the virus by treating fungal cultures with polyethylene glycol. Examination of 62 isolates of P. destructans including 35 from United States, 10 from Canada and 17 from Europe showed virus infection only in North American isolates of the fungus. Bayesian phylogenetic analysis using nucleotide sequences of the viral coat protein geographically clustered North American isolates indicating fungal spread followed by local adaptation of P. destructans in different regions of the United States and Canada. This is the first demonstration that a mycovirus potentially can be used to study fungal disease epidemiology. PMID:28027325

Using a Novel Partitivirus in Pseudogymnoascus destructans to Understand the Epidemiology of White-Nose Syndrome.

PubMed

Thapa, Vaskar; Turner, Gregory G; Hafenstein, Susan; Overton, Barrie E; Vanderwolf, Karen J; Roossinck, Marilyn J

2016-12-01

White-nose syndrome is one of the most lethal wildlife diseases, killing over 5 million North American bats since it was first reported in 2006. The causal agent of the disease is a psychrophilic filamentous fungus, Pseudogymnoascus destructans. The fungus is widely distributed in North America and Europe and has recently been found in some parts of Asia, but interestingly, no mass mortality is observed in European or Asian bats. Here we report a novel double-stranded RNA virus found in North American isolates of the fungus and show that the virus can be used as a tool to study the epidemiology of White-nose syndrome. The virus, termed Pseudogymnoascus destructans partitivirus-pa, contains 2 genomic segments, dsRNA 1 and dsRNA 2 of 1.76 kbp and 1.59 kbp respectively, each possessing a single open reading frame, and forms isometric particles approximately 30 nm in diameter, characteristic of the genus Gammapartitivirus in the family Partitiviridae. Phylogenetic analysis revealed that the virus is closely related to Penicillium stoloniferum virus S. We were able to cure P. destructans of the virus by treating fungal cultures with polyethylene glycol. Examination of 62 isolates of P. destructans including 35 from United States, 10 from Canada and 17 from Europe showed virus infection only in North American isolates of the fungus. Bayesian phylogenetic analysis using nucleotide sequences of the viral coat protein geographically clustered North American isolates indicating fungal spread followed by local adaptation of P. destructans in different regions of the United States and Canada. This is the first demonstration that a mycovirus potentially can be used to study fungal disease epidemiology.

Molecular evidence for interspecies transmission of H3N2pM/H3N2v influenza A viruses at an Ohio agricultural fair, July 2012

PubMed Central

Bowman, Andrew S; Sreevatsan, Srinand; Killian, Mary L; Page, Shannon L; Nelson, Sarah W; Nolting, Jacqueline M; Cardona, Carol; Slemons, Richard D

2012-01-01

Evidence accumulating in 2011–2012 indicates that there is significant intra- and inter-species transmission of influenza A viruses at agricultural fairs, which has renewed interest in this unique human/swine interface. Six human cases of influenza A (H3N2) variant (H3N2v) virus infections were epidemiologically linked to swine exposure at fairs in the United States in 2011. In 2012, the number of H3N2v cases in the Midwest had exceeded 300 from early July to September, 2012. Prospective influenza A virus surveillance among pigs at Ohio fairs resulted in the detection of H3N2pM (H3N2 influenza A viruses containing the matrix (M) gene from the influenza A (H1N1) pdm09 virus). These H3N2pM viruses were temporally and spatially linked to several human H3N2v cases. Complete genomic analyses of these H3N2pM isolates demonstrated >99% nucleotide similarity to the H3N2v isolates recovered from human cases. Actions to mitigate the bidirectional interspecies transmission of influenza A virus between people and animals at agricultural fairs may be warranted. PMID:26038404

Detection of viruses in drinking water by concentration on magnetic iron oxide.

PubMed

Rao, V C; Waghmare, S V; Lakhe, S B

1981-09-01

Discharge of raw domestic wastes containing human enteric viruses into water courses, consumption of untreated water from canals, streams, and shallow wells in villages, and cross-contamination of water in the distribution system because of intermittent water supply in urban areas continue to cause widespread outbreaks of infectious hepatitis in India. To detect a low number of viruses in 50- to 100-liter samples of water, a method was developed with magnetic iron oxide as the virus adsorbent. Poliovirus-seeded dechlorinated tap water, adjusted to pH 3.0 and 0.0005 M AlCl3, was filtered through a 10-g bed of iron oxide sandwiched between two AP20 prefilter pads held in a 142-mm-diameter, stainless-steel holder. Virus was eluted from iron oxide by recirculating three times a 100-ml volume of 3% beef extract, pH 9.0. The eluate was reconcentrated to 5 ml by adjusting to pH 3, adding 1 g of iron oxide, stirring for 30 min, and eluting the readsorbed virus with 5 ml of beef extract, pH 9.0. Virus recovery varied from 60 to 80%. Using the above method, we took a survey of drinking water at three locations in Nagpur during 1976 and found the presence of virus in 7 of 50 samples. The quantity of virus recovered ranged from 1 to 7 plaque-forming units per 30 to 60 liters. Virus was detected in some samples even with residual chlorine. No coliforms were detected in the virus-positive samples.

Low prevalence of avian influenza virus in shorebirds on the Pacific coast of North America

USGS Publications Warehouse

Iverson, Samuel A.; Takekawa, John Y.; Schwarzbach, Steven; Cardona, Carol J.; Warnock, Nils; Bishop, Mary Anne; Schirato, Greg A.; Paroulek, Sara; Ackerman, Joshua T.; Ip, Hon S.; Boyce, Walter M.

2008-01-01

The emergence of highly pathogenic avian influenza (HPAI) H5N1 has elevated concerns about wild birds as virus hosts; however, little is known about the ecological and epidemiological factors of transmission by shorebirds. Here we summarize results for 2,773 shorebirds that were live-trapped on the Pacific coast of the United States during 2006-2007 and tested for avian influenza virus using real-time reverse transcriptase-polymerase chain reaction (RT-PCR) and virus isolation. As was the case throughout North America, HPAI H5N1 was not detected in shorebirds during this interval. Contrary to other wild bird groups, most notably waterfowl, the prevalence of even low pathogenicity virus among shorebirds in our study areas in California, Washington, and Alaska was extremely low (0.5%). Virus was detected by RT-PCR from four different species, including, Dunlin (Calidris alpina; N = 3), Western Sandpiper (C. mauri; N = 8), Long-billed Dowitcher (Limnodromus scolopaceus; N = 1), and American Avocet (Recurvirostra americana; N = 1), with the detections in the latter three constituting the first published records for these birds. Based on studies in the eastern United States, we expected, but did not detect (H1 = 1.6, P = 0.21) elevated avian influenza prevalence among shorebirds during spring migration. Diagnostic tests, which were designed to evaluate testing and sampling methods, indicated poor functioning of traditional virus isolation methods and no improvement in detection likelihood by collecting oropharyngeal swabs in addition to cloacal swab samples for low pathogenicity viruses (Z1 = 0.7, P = 0.48).

Monitoring of Low-Level Virus in Natural Waters

PubMed Central

Sorber, Charles A.; Sagik, Bernard P.; Malina, Joseph F.

1971-01-01

The insoluble polyelectrolyte technique for concentrating virus is extended to extremely low virus levels. The effectiveness of this method employing a coliphage T2 model is a constant 20% over a range of virus levels from 103 to 10−4 plaque-forming units/ml. The efficiency of the method is dependent upon pH control during the concentration phase. Although the study was initiated to develop a method for quantitating the effectiveness of water and wastewater treatment methods for the removal of viruses from waters at low concentrations, the potential of the technique for efficient monitoring of natural waters is apparent. PMID:4940873

Hospitalized patients with 2009 pandemic influenza A (H1N1) virus infection in the United States--September-October 2009.

PubMed

Skarbinski, Jacek; Jain, Seema; Bramley, Anna; Lee, Esther J; Huang, Jean; Kirschke, David; Stone, Allison; Wedlake, Tiffany; Richards, Shawn M; Page, Shannon; Ragan, Patti; Bullion, Lesley; Neises, Daniel; Williams, Robin M; Petruccelli, Bruno P; Vandermeer, Meredith; Lofy, Kathryn H; Gindler, Jacqueline; Finelli, Lyn

2011-01-01

Given the potential worsening clinical severity of 2009 pandemic influenza A (H1N1) virus (pH1N1) infection from spring to fall 2009, we conducted a clinical case series among patients hospitalized with pH1N1 infection from September through October 2009. A case patient was defined as a hospitalized person who had test results positive for pH1N1 virus by real-time reverse-transcription polymerase chain reaction. Among 255 hospitalized patients, 34% were admitted to an intensive care unit and 8% died. Thirty-four percent of patients were children <18 years of age, 8% were adults ≥ 65 years of age, and 67% had an underlying medical condition. Chest radiographs obtained at hospital admission that had findings that were consistent with pneumonia were noted in 103 (46%) of 255 patients. Among 255 hospitalized patients, 208 (82%) received neuraminidase inhibitors, but only 47% had treatment started ≤ 2 days after illness onset. Overall, characteristics of hospitalized patients with pH1N1 infection in fall 2009 were similar to characteristics of patients hospitalized with pH1N1 infection in spring 2009, which suggests that clinical severity did not change substantially over this period.

MUSE field splitter unit: fan-shaped separator for 24 integral field units

NASA Astrophysics Data System (ADS)

Laurent, Florence; Renault, Edgard; Anwand, Heiko; Boudon, Didier; Caillier, Patrick; Kosmalski, Johan; Loupias, Magali; Nicklas, Harald; Seifert, Walter; Salaun, Yves; Xu, Wenli

2014-07-01

MUSE (Multi Unit Spectroscopic Explorer) is a second generation Very Large Telescope (VLT) integral field spectrograph developed for the European Southern Observatory (ESO). It combines a 1' x 1' field of view sampled at 0.2 arcsec for its Wide Field Mode (WFM) and a 7.5"x7.5" field of view for its Narrow Field Mode (NFM). Both modes will operate with the improved spatial resolution provided by GALACSI (Ground Atmospheric Layer Adaptive Optics for Spectroscopic Imaging), that will use the VLT deformable secondary mirror and 4 Laser Guide Stars (LGS) foreseen in 2015. MUSE operates in the visible wavelength range (0.465-0.93 μm). A consortium of seven institutes is currently commissioning MUSE in the Very Large Telescope for the Preliminary Acceptance in Chile, scheduled for September, 2014. MUSE is composed of several subsystems which are under the responsibility of each institute. The Fore Optics derotates and anamorphoses the image at the focal plane. A Splitting and Relay Optics feed the 24 identical Integral Field Units (IFU), that are mounted within a large monolithic instrument mechanical structure. Each IFU incorporates an image slicer, a fully refractive spectrograph with VPH-grating and a detector system connected to a global vacuum and cryogenic system. During 2012 and 2013, all MUSE subsystems were integrated, aligned and tested to the P.I. institute at Lyon. After successful PAE in September 2013, MUSE instrument was shipped to the Very Large Telescope in Chile where it was aligned and tested in ESO integration hall at Paranal. After, MUSE was directly transferred in monolithic way onto VLT telescope where the first light was achieved. This paper describes the MUSE main optical component: the Field Splitter Unit. It splits the VLT image into 24 subfields and provides the first separation of the beam for the 24 Integral Field Units. This talk depicts its manufacturing at Winlight Optics and its alignment into MUSE instrument. The success of the MUSE alignment is demonstrated by the excellent results obtained onto MUSE positioning, image quality and throughput onto the sky. MUSE commissioning at the VLT is planned for September, 2014.

STS-82 Discovery payloads being integrated in VPF

NASA Image and Video Library

1997-01-30

KENNEDY SPACE CENTER, FLORIDA STS-82 PREPARATIONS VIEW --- Payload processing workers in the Kennedy Space Center (KSC) Vertical Processing Facility (VPF) prepare to integrate the Space Telescope Imaging Spectrograph (STIS), suspended at center, into the Orbiter Replacement Unit (ORU) Carrier and Scientific Instrument Protective Enclosure (SIPE). STIS will replace the Goddard High Resolution Spectrograph (GHRS) on the Hubble Space Telescope (HST). Four of the seven STS-82 crew members will perform a series of spacewalks to replace two scientific instruments with two new instruments, including STIS, and perform other tasks during the second HST servicing mission. HST was deployed nearly seven years ago and was initially serviced in 1993.

Detector Arrays for the James Webb Space Telescope Near-Infrared Spectrograph

NASA Technical Reports Server (NTRS)

Rauscher, Bernard J.; Alexander, David; Brambora, Clifford K.; Derro, Rebecca; Engler, Chuck; Fox, Ori; Garrison, Matthew B.; Henegar, Greg; Hill, robert J.; Johnson, Thomas;

Efficacy of inactivation of viral contaminants in hyperimmune horse plasma against botulinum toxin by low pH alone and combined with pepsin digestion.

PubMed

Torgeman, Amram; Mador, Nurit; Dorozko, Marina; Lifshitz, Aliza; Eschar, Naomi; White, Moshe D; Wolf, Dana G; Epstein, Eyal

2017-07-01

Assuring viral safety of horse plasma-derived products is fundamental for ethical and regulatory reasons. We previously demonstrated the ability of pepsin digestion at low pH to inactivate West Nile and Sindbis viruses in horse plasma. The present study further examined the efficiency of pepsin digestion to inactivate four additional viruses: HSV-1 and BVDV (lipid-enveloped), BPV and Reo-3 (nonenveloped). These viruses were spiked into hyperimmunized horse plasma against botulinum toxin and subjected to low pH (3.2) alone or combined with pepsin digestion (1200 units/ml). Peptic digestion inactivated the lipid-enveloped viruses, whereas the nonenveloped viruses were unaffected. Interestingly, HSV-1 was rapidly inactivated by acidic pH alone (≥4.9 ± 0.6 log 10 ), whereas a non-robust but meaningful BVDV inactivation (2.9 ± 0.7 log 10 ) was achieved by combined low pH and pepsin. The current study demonstrated the ability of low pH alone and in combination with pepsin digestion to inactivate enveloped viral contaminants in anti-toxin horse plasma. Copyright © 2017 International Alliance for Biological Standardization. Published by Elsevier Ltd. All rights reserved.

CUBES: cassegrain U-band Brazil-ESO spectrograph

NASA Astrophysics Data System (ADS)

Barbuy, B.; Bawden Macanhan, V.; Bristow, P.; Castilho, B.; Dekker, H.; Delabre, B.; Diaz, M.; Gneiding, C.; Kerber, F.; Kuntschner, H.; La Mura, G.; Maciel, W.; Meléndez, J.; Pasquini, L.; Pereira, C. B.; Petitjean, P.; Reiss, R.; Siqueira-Mello, C.; Smiljanic, R.; Vernet, J.

2014-11-01

CUBES is a high-efficiency, medium-resolution ( R˜20,000) ground based UV (300-400 nm) spectrograph, to be installed in the cassegrain focus of one of ESO's VLT unit telescopes in 2017/18. The CUBES project is a joint venture between ESO and IAG/USP, and LNA/MCTI. CUBES will provide access to a wealth of new and relevant information for stellar as well as extragalactic sources. Main science cases include the study of beryllium and heavy elements in metal-poor stars, the direct determination of carbon, nitrogen and oxygen abundances by study of molecular bands in the UV range, as well as the study of active galactic nuclei and the quasar absorption lines. With a streamlined modern instrument design, high efficiency dispersing elements and UV-sensitive detectors, it will give a significant gain in sensitivity over existing ground based medium-high resolution spectrographs, enabling vastly increased sample sizes accessible to the astronomical community. We present here a brief overview of the project including the status, science cases and a discussion of the design options.

The opto-mechanical design of HARMONI: a first light integral field spectrograph for the E-ELT

NASA Astrophysics Data System (ADS)

Thatte, Niranjan A.; Tecza, Mathias; Freeman, David; Gallie, Angus M.; Montgomery, David; Clarke, Fraser; Fragoso-Lopez, Ana Belén.; Fuentes, Javier; Gago, Fernando; Garcia, Adolfo; Gracia, Felix; Kosmalski, Johan; Lynn, James; Sosa, Dario; Arribas, Santiago; Bacon, Roland; Davies, Roger L.; Fusco, Thierry; Lunney, David; Mediavilla, Evencio; Remillieux, Alban; Schnetler, Hermine

2012-09-01

HARMONI is a visible and near-IR integral field spectrograph, providing the E-ELT's spectroscopic capability at first light. It obtains simultaneous spectra of 32000 spaxels, at a range of resolving powers from R~4000 to R~20000, covering the wavelength range from 0.47 to 2.45 μm. The 256 × 128 spaxel field of view has four different plate scales, with the coarsest scale (40 mas) providing a 5″ × 10″ FoV, while the finest scale is a factor of 10 finer (4mas). We describe the opto-mechanical design of HARMONI, prior to the start of preliminary design, including the main subsystems - namely the image de-rotator, the scale-changing optics, the splitting and slicing optics, and the spectrographs. We also present the secondary guiding system, the pupil imaging optics, the field and pupil stops, the natural guide star wavefront sensor, and the calibration unit.

Method for determination of small amounts of rare earths and thorium in phosphate rocks

USGS Publications Warehouse

Waring, C.L.; Mela, H.

1953-01-01

In laboratory investigations, interest developed in the possible rare-earth content of phosphate samples from Florida and the northwestern United States. Because of the difficulty of making chemical determinations of traces of individual rare earths, a combined chemical-spectrographic method was investigated. After removal of iron by the extraction of the chloride with ether, the rare earths and thorium are concentrated by double oxalate precipitation, using calcium as a carrier. The rare earths are freed from calcium by an ammonium hydroxide precipitation with a fixed amount of aluminum as a carrier. The aluminum also serves as an internal standard in the final spectrographic analysis. The method will determine from 0.02 to 2 mg. of each rare earth with an error no greater than 10%. The investigation has resulted in a fairly rapid and precise procedure, involving no special spectrographic setup. The method could be applied to other types of geologic materials with the same expected accuracy.

Design progress of the solar UV-Vis-IR telescope (SUVIT) aboard SOLAR-C

NASA Astrophysics Data System (ADS)

Katsukawa, Y.; Ichimoto, K.; Suematsu, Y.; Hara, H.; Kano, R.; Shimizu, T.; Matsuzaki, K.

2013-09-01

We present a design progress of the Solar UV-Vis-IR Telescope (SUVIT) aboard the next Japanese solar mission SOLAR-C. SUVIT has an aperture diameter of ~1.4 m for achieving spectro-polarimetric observations with spatial and temporal resolution exceeding the Hinode Solar Optical Telescope (SOT). We have studied structural and thermal designs of the optical telescope as well as the optical interface between the telescope and the focal plane instruments. The focal plane instruments are installed into two packages, filtergraph and spectrograph packages. The spectropolarimeter is the instrument dedicated to accurate polarimetry in the three spectrum windows at 525 nm, 854 nm, and 1083 nm for observing magnetic fields at both the photospheric and chromospheric layers. We made optical design of the spectrograph accommodating the conventional slit spectrograph and the integral field unit (IFU) for two-dimensional coverage. We are running feasibility study of the IFU using fiber arrays consisting of rectangular cores.

The PALM-3000 high-order adaptive optics system for Palomar Observatory

NASA Astrophysics Data System (ADS)

Bouchez, Antonin H.; Dekany, Richard G.; Angione, John R.; Baranec, Christoph; Britton, Matthew C.; Bui, Khanh; Burruss, Rick S.; Cromer, John L.; Guiwits, Stephen R.; Henning, John R.; Hickey, Jeff; McKenna, Daniel L.; Moore, Anna M.; Roberts, Jennifer E.; Trinh, Thang Q.; Troy, Mitchell; Truong, Tuan N.; Velur, Viswa

2008-07-01

Deployed as a multi-user shared facility on the 5.1 meter Hale Telescope at Palomar Observatory, the PALM-3000 highorder upgrade to the successful Palomar Adaptive Optics System will deliver extreme AO correction in the near-infrared, and diffraction-limited images down to visible wavelengths, using both natural and sodium laser guide stars. Wavefront control will be provided by two deformable mirrors, a 3368 active actuator woofer and 349 active actuator tweeter, controlled at up to 3 kHz using an innovative wavefront processor based on a cluster of 17 graphics processing units. A Shack-Hartmann wavefront sensor with selectable pupil sampling will provide high-order wavefront sensing, while an infrared tip/tilt sensor and visible truth wavefront sensor will provide low-order LGS control. Four back-end instruments are planned at first light: the PHARO near-infrared camera/spectrograph, the SWIFT visible light integral field spectrograph, Project 1640, a near-infrared coronagraphic integral field spectrograph, and 888Cam, a high-resolution visible light imager.

Detection of infectious haematopoietic necrosis virus in river water and demonstration of waterborne transmission

USGS Publications Warehouse

Mulcahy, D.; Pascho, R.J.; Jenes, C.K.

1983-01-01

In a study of the possible role of waterborne infectious haematopoietic necrosis virus in transmission of the disease among spawning sockeye salmon, Oncorhynchus nerka (Walbaum), both infection rates and virus titres were higher in fish held at high density in a side channel than in fish in the adjacent river. Virus was never isolated from river water, but was found in water from the side channel at levels ranging from 32.5 to 1600 plaque-forming units (p.f.u.)/ml. Uninfected yearling sockeye salmon held in a box in the side channel developed localized gill infections with IHN virus. The disease did not progress to the viscera until a threshold titre of about 105 p.f.u./g was reached in the gill. The effectiveness of the gill as a barrier limiting development of systemic infections means that waterborne IHN virus probably does not greatly increase the infection rate in a sockeye salmon population during spawning.

Detection of infectious hematopoietic necrosis virus in river water and demonstration of waterborne transmission

USGS Publications Warehouse

Mulcahy, Daniel M.; Pascho, Ronald J.; Jenes, C.K.

1983-01-01

In a study of the possible role of waterborne infectious haematopoietic necrosis virus in transmission of the disease among spawning sockeye salmon, Oncorhynchus nerka (Walbaum), both infection rates and virus titres were higher in fish held at high density in a side channel than in fish in the adjacent river. Virus was never isolated from river water, but was found in water from the side channel at levels ranging from 32.5 to 1600 plaque-forming units (p.f.u.)/ml. Uninfected yearling sockeye salmon held in a box in the side channel developed localized gill infections with IHN virus. The disease did not progress to the viscera until a threshold titre of about 105 p.f.u./g was reached in the gill. The effectiveness of the gill as a barrier limiting development of systemic infections means that waterborne IHN virus probably does not greatly increase the infection rate in a sockeye salmon population during spawning.

Far-ultraviolet Spectroscopy of Recent Comets with the Cosmic Origins Spectrograph on the Hubble Space Telescope

NASA Astrophysics Data System (ADS)

Feldman, Paul D.; Weaver, Harold A.; A’Hearn, Michael F.; Combi, Michael R.; Dello Russo, Neil

2018-05-01

Since its launch in 1990, the Hubble Space Telescope (HST) has served as a platform with unique capabilities for remote observations of comets in the far-ultraviolet region of the spectrum. Successive generations of imagers and spectrographs have seen large advances in sensitivity and spectral resolution enabling observations of the diverse properties of a representative number of comets during the past 25 years. To date, four comets have been observed in the far-ultraviolet by the Cosmic Origins Spectrograph (COS), the last spectrograph to be installed in HST, in 2009: 103P/Hartley 2, C/2009 P1 (Garradd), C/2012 S1 (ISON), and C/2014 Q2 (Lovejoy). COS has unprecedented sensitivity, but limited spatial information in its 2.″5 diameter circular aperture, and our objective was to determine the CO production rates from measurements of the CO Fourth Positive system in the spectral range of 1400–1700 Å. In the two brightest comets, 19 bands of this system were clearly identified. The water production rates were derived from nearly concurrent observations of the OH (0,0) band at 3085 Å by the Space Telescope Imaging Spectrograph. The derived CO/{{{H}}}2{{O}} production rate ratio ranged from ∼0.3% for Hartley 2 to ∼22% for Garradd. In addition, strong partially resolved emission features due to multiplets of S I, centered at 1429 Å and 1479 Å, and of C I at 1561 Å and 1657 Å, were observed in all four comets. Weak emission from several lines of the {{{H}}}2 Lyman band system, excited by solar Lyα and Lyβ pumped fluorescence, were detected in comet Lovejoy.

VizieR Online Data Catalog: Selection function of Milky Way field stars (Stonkute+, 2016)

NASA Astrophysics Data System (ADS)

Stonkute, E.; Koposov, S. E.; Howes, L. M.; Feltzing, S.; Worley, C. C.; Gilmore, G.; Ruchti, G. R.; Kordopatis, G.; Randich, S.; Zwitter, T.; Bensby, T.; Bragaglia, A.; Smiljanic, R.; Costado, M. T.; Tautvaisiene, G.; Casey, A. R.; Korn, A. J.; Lanzafame, A. C.; Pancino, E.; Franciosini, E.; Hourihane, A.; Jofre, P.; Lardo, C.; Lewis, J.; Magrini, L.; Monaco, L.; Morbidelli, L.; Sacco, G. G.; Sbordone, L.

2017-10-01

The observations are conducted with the FLAMES (Pasquini et al., 2002Msngr.110....1P) at the Very Large Telescope (VLT) array operated by the European Southern Observatory on Cerro Paranal, Chile. FLAMES is a fibre facility of the VLT and is mounted at the Nasmyth A platform of the second Unit Telescope of VLT. In this paper, we present the Gaia-ESO Survey selection function only for the Milky Way field stars observed with the GIRAFFE and UVES spectrographs at VLT, not including the bulge. All targets were selected according to their colours and magnitudes, using photometry from the VISTA Hemisphere Survey (VHS; McMahon et al. 2013Msngr.154...35M) and the Two Micron All-Sky Survey (2MASS; Skrutskie et al., 2006, Cat. VII/233). Selected potential target lists were generated at the Cambridge Astronomy Survey Unit (CASU) centre. (3 data files).

Purification and crystallization of Kokobera virus helicase

DOE Office of Scientific and Technical Information (OSTI.GOV)

De Colibus, Luigi; Speroni, Silvia; Coutard, Bruno

2007-03-01

Kokobera virus is a mosquito-borne flavivirus belonging, like West Nile virus, to the Japanese encephalitis virus serocomplex. Crystals of the Kokobera virus helicase domain were obtained by the hanging-drop vapour-diffusion method and exhibit a diffraction limit of 2.3 Å. Kokobera virus is a mosquito-borne flavivirus belonging, like West Nile virus, to the Japanese encephalitis virus serocomplex. The flavivirus genus is characterized by a positive-sense single-stranded RNA genome. The unique open reading frame of the viral RNA is transcribed and translated as a single polyprotein which is post-translationally cleaved to yield three structural and seven nonstructural proteins, one of which ismore » the NS3 gene that encodes a C-terminal helicase domain consisting of 431 amino acids. Helicase inhibitors are potential antiviral drugs as the helicase is essential to viral replication. Crystals of the Kokobera virus helicase domain were obtained by the hanging-drop vapour-diffusion method. The crystals belong to space group P3{sub 1}21 (or P3{sub 2}21), with unit-cell parameters a = 88.6, c = 138.6 Å, and exhibit a diffraction limit of 2.3 Å.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Assenberg, René; Delmas, Olivier; Graham, Stephen C.

The expression, purification and crystallization of the full-length matrix protein from three lyssaviruses is described. The matrix (M) proteins of lyssaviruses (family Rhabdoviridae) are crucial to viral morphogenesis as well as in modulating replication and transcription of the viral genome. To date, no high-resolution structural information has been obtained for full-length rhabdovirus M. Here, the cloning, expression and purification of the matrix proteins from three lyssaviruses, Lagos bat virus (LAG), Mokola virus and Thailand dog virus, are described. Crystals have been obtained for the full-length M protein from Lagos bat virus (LAG M). Successful crystallization depended on a number ofmore » factors, in particular the addition of an N-terminal SUMO fusion tag to increase protein solubility. Diffraction data have been recorded from crystals of native and selenomethionine-labelled LAG M to 2.75 and 3.0 Å resolution, respectively. Preliminary analysis indicates that these crystals belong to space group P6{sub 1}22 or P6{sub 5}22, with unit-cell parameters a = b = 56.9–57.2, c = 187.9–188.6 Å, consistent with the presence of one molecule per asymmetric unit, and structure determination is currently in progress.« less

Optical design of MEMS-based infrared multi-object spectrograph concept for the Gemini South Telescope

NASA Astrophysics Data System (ADS)

Chen, Shaojie; Sivanandam, Suresh; Moon, Dae-Sik

2016-08-01

We discuss the optical design of an infrared multi-object spectrograph (MOS) concept that is designed to take advantage of the multi-conjugate adaptive optics (MCAO) corrected field at the Gemini South telescope. This design employs a unique, cryogenic MEMS-based focal plane mask to select target objects for spectroscopy by utilizing the Micro-Shutter Array (MSA) technology originally developed for the Near Infrared Spectrometer (NIRSpec) of the James Webb Space Telescope (JWST). The optical design is based on all spherical refractive optics, which serves both imaging and spectroscopic modes across the wavelength range of 0.9-2.5 μm. The optical system consists of a reimaging system, MSA, collimator, volume phase holographic (VPH) grisms, and spectrograph camera optics. The VPH grisms, which are VPH gratings sandwiched between two prisms, provide high dispersing efficiencies, and a set of several VPH grisms provide the broad spectral coverage at high throughputs. The imaging mode is implemented by removing the MSA and the dispersing unit out of the beam. We optimize both the imaging and spectrographic modes simultaneously, while paying special attention to the performance of the pupil imaging at the cold stop. Our current design provides a 1' ♢ 1' and a 0.5' ♢ 1' field of views for imaging and spectroscopic modes, respectively, on a 2048 × 2048 pixel HAWAII-2RG detector array. The spectrograph's slit width and spectral resolving power are 0.18'' and 3,000, respectively, and spectra of up to 100 objects can be obtained simultaneously. We present the overall results of simulated performance using optical model we designed.

Cracking the Code of Faraway Worlds

NASA Technical Reports Server (NTRS)

2007-01-01

This infrared data from NASA's Spitzer Space Telescope - called a spectrum - tells astronomers that a distant gas planet, a so-called 'hot Jupiter' called HD 209458b, might be smothered with high clouds. It is one of the first spectra of an alien world.

A spectrum is created when an instrument called a spectrograph spreads light from an object apart into a rainbow of different wavelengths. Patterns or ripples within the spectrum indicate the presence, or absence, of molecules making up the object.

Astronomers using Spitzer's spectrograph were able to obtain infrared spectra for two so-called 'transiting' hot-Jupiter planets using the 'secondary eclipse' technique. In this method, the spectrograph first collects the combined infrared light from the planet plus its star, then, as the planet is eclipsed by the star, the infrared light of just the star. Subtracting the latter from the former reveals the planet's own rainbow of infrared colors.

When astronomers first saw the infrared spectrum above, they were shocked. It doesn't look anything like what theorists had predicted. Theorists though the spectra for hot, Jupiter-like planets like this one would be filled with the signatures of molecules in the planets' atmospheres. But the spectrum doesn't show any molecules. It is what astronomers call 'flat.' For example, theorists thought there'd be signatures of water in the wavelength ranges of 8 to 9 microns. The fact that water is not seen there might indicate that the water is hidden under a thick blanket of high, dry clouds.

This spectrum was produced by Dr. Mark R. Swain of NASA's Jet Propulsion Laboratory in Pasadena, Calif., using a complex set of mathematical tools. It was derived using two different methods, both of which led to the same result. The data were taken on July 6 and 13, 2005, by Dr. Jeremy Richardson of NASA's Goddard Space Flight Center and his team using Spitzer's infrared spectrograph.

The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5' part of the genome.

PubMed

Desbiez, C; Lecoq, H

2004-08-01

Watermelon mosaic virus (WMV, Potyvirus) is a potyvirus with a worldwide distribution, mostly in temperate and mediterranean regions. According to the partial sequences that were available, WMV appeared to share high sequence similarity with Soybean mosaic virus (SMV), and it was almost considered as a strain of SMV in spite of its different and much broader host range. Like SMV, it was also related to legume-infecting potyviruses belonging to the " Bean common mosaic virus (BCMV) subgroup". In this paper we obtained the full-length sequence of WMV, and we confirmed that this virus is very closely related to SMV in most of its genome; however, there is evidence for an interspecific recombination in the P1 protein, as the P1 of WMV was 135 amino-acids longer than that of SMV, and the N-terminal half of the P1 showed no relation to SMV but was 85% identical to BCMV. This suggests that WMV has emerged through an ancestral recombination event, and supports the distinction of WMV and SMV as separate taxonomic units.

MUSE optical alignment procedure

NASA Astrophysics Data System (ADS)

Laurent, Florence; Renault, Edgard; Loupias, Magali; Kosmalski, Johan; Anwand, Heiko; Bacon, Roland; Boudon, Didier; Caillier, Patrick; Daguisé, Eric; Dubois, Jean-Pierre; Dupuy, Christophe; Kelz, Andreas; Lizon, Jean-Louis; Nicklas, Harald; Parès, Laurent; Remillieux, Alban; Seifert, Walter; Valentin, Hervé; Xu, Wenli

2012-09-01

MUSE (Multi Unit Spectroscopic Explorer) is a second generation VLT integral field spectrograph (1x1arcmin² Field of View) developed for the European Southern Observatory (ESO), operating in the visible wavelength range (0.465-0.93 μm). A consortium of seven institutes is currently assembling and testing MUSE in the Integration Hall of the Observatoire de Lyon for the Preliminary Acceptance in Europe, scheduled for 2013. MUSE is composed of several subsystems which are under the responsibility of each institute. The Fore Optics derotates and anamorphoses the image at the focal plane. A Splitting and Relay Optics feed the 24 identical Integral Field Units (IFU), that are mounted within a large monolithic instrument mechanical structure. Each IFU incorporates an image slicer, a fully refractive spectrograph with VPH-grating and a detector system connected to a global vacuum and cryogenic system. During 2011, all MUSE subsystems were integrated, aligned and tested independently in each institute. After validations, the systems were shipped to the P.I. institute at Lyon and were assembled in the Integration Hall This paper describes the end-to-end optical alignment procedure of the MUSE instrument. The design strategy, mixing an optical alignment by manufacturing (plug and play approach) and few adjustments on key components, is presented. We depict the alignment method for identifying the optical axis using several references located in pupil and image planes. All tools required to perform the global alignment between each subsystem are described. The success of this alignment approach is demonstrated by the good results for the MUSE image quality. MUSE commissioning at the VLT (Very Large Telescope) is planned for 2013.

Comparison of talc-Celite and polyelectrolyte 60 in virus recovery from sewage: development of technique and experiments with poliovirus (type 1, Sabin)-contaminated multilitre samples.

PubMed

Sattar, S A; Westwood, J C

1976-11-01

For virus recovery from sewage, a mixture of talc and Celite was tested as a possible inexpensive substitute for polyelectrolyte 60 (PE 60). After adjustment of pH to 6 and the addition of 45-60 plaque forming units (PFU)/ml of poliovirus type I (Sabin) to the sewage sample under test, 100 ml of it was passed through either a PE 60 (400 mg) or a talc (300 mg)-Celite (100 mg) layer; the layer-adsorbed virus was eluted with 10 ml of 10% fetal calf serum (FCS) in saline (pH 7.2). In these experiments, PE 60 layers recovered 73-80% (mean 76%) of the input virus. In comparison, virus recoveries with the talc-Celite layers were 65-70% (mean 68%). Passage of 5 litres of raw sewage (containing 50 to 1.26 X 10(5) PFU/100 ml of the poliovirus) through the talc (15 g)-Celite (5 g) layers and virus elution with 50 ml of 10% FCS in saline gave virus recoveries of 33-63% (mean 49%). Except for pH adjustment and prefiltration through two layers of gauze to remove large solids, no other sample pretreatment was found to be necessary. Application of this technique to recovery of indigenous viruses from field samples of raw sewage and effluents has been highly satisfactory.

PRAXIS: low thermal emission high efficiency OH suppressed fibre spectrograph

NASA Astrophysics Data System (ADS)

Content, Robert; Bland-Hawthorn, Joss; Ellis, Simon; Gers, Luke; Haynes, Roger; Horton, Anthony; Lawrence, Jon; Leon-Saval, Sergio; Lindley, Emma; Min, Seong-Sik; Shortridge, Keith; Staszak, Nick; Trinh, Christopher; Xavier, Pascal; Zhelem, Ross

2014-07-01

PRAXIS is a second generation instrument that follows on from GNOSIS, which was the first instrument using fibre Bragg gratings for OH suppression to be deployed on a telescope. The Bragg gratings reflect the NIR OH lines while being transparent to the light between the lines. This gives in principle a much higher signal-noise ratio at low resolution spectroscopy but also at higher resolutions by removing the scattered wings of the OH lines. The specifications call for high throughput and very low thermal and detector noise so that PRAXIS will remain sky noise limited even with the low sky background levels remaining after OH suppression. The optical and mechanical designs are presented. The optical train starts with fore-optics that image the telescope focal plane on an IFU which has 19 hexagonal microlenses each feeding a multi-mode fibre. Seven of these fibres are attached to a fibre Bragg grating OH suppression system while the others are reference/acquisition fibres. The light from each of the seven OH suppression fibres is then split by a photonic lantern into many single mode fibres where the Bragg gratings are imprinted. Another lantern recombines the light from the single mode fibres into a multi-mode fibre. A trade-off was made in the design of the IFU between field of view and transmission to maximize the signal-noise ratio for observations of faint, compact objects under typical seeing. GNOSIS used the pre-existing IRIS2 spectrograph while PRAXIS will use a new spectrograph specifically designed for the fibre Bragg grating OH suppression and optimised for 1.47 μm to 1.7 μm (it can also be used in the 1.09 μm to 1.26 μm band by changing the grating and refocussing). This results in a significantly higher transmission due to high efficiency coatings, a VPH grating at low incident angle and optimized for our small bandwidth, and low absorption glasses. The detector noise will also be lower thanks to the use of a current generation HAWAII-2RG detector. Throughout the PRAXIS design, from the fore-optics to the detector enclosure, special care was taken at every step along the optical path to reduce thermal emission or stop it leaking into the system. The spectrograph design itself was particularly challenging in this aspect because practical constraints required that the detector and the spectrograph enclosures be physically separate with air at ambient temperature between them. At present, the instrument uses the GNOSIS fibre Bragg grating OH suppression unit. We intend to soon use a new OH suppression unit based on multicore fibre Bragg gratings which will allow an increased field of view per fibre. Theoretical calculations show that the gain in interline sky background signal-noise ratio over GNOSIS may very well be as high as 9 with the GNOSIS OH suppression unit and 17 with the multicore fibre OH suppression unit.

The SED Machine: a dedicated transient IFU spectrograph

NASA Astrophysics Data System (ADS)

Ben-Ami, Sagi; Konidaris, Nick; Quimby, Robert; Davis, Jack T.; Ngeow, Chow Choong; Ritter, Andreas; Rudy, Alexander

2012-09-01

The Spectral Energy Distribution (SED) Machine is an Integral Field Unit (IFU) spectrograph designed specifically to classify transients. It is comprised of two subsystems. A lenselet based IFU, with a 26" × 26" Field of View (FoV) and ˜ 0.75" spaxels feeds a constant resolution (R˜100) triple-prism. The dispersed rays are than imaged onto an off-the-shelf CCD detector. The second subsystem, the Rainbow Camera (RC), is a 4-band seeing-limited imager with a 12.5' × 12.5' FoV around the IFU that will allow real time spectrophotometric calibrations with a ˜ 5% accuracy. Data from both subsystems will be processed in real time using a dedicated reduction pipeline. The SED Machine will be mounted on the Palomar 60-inch robotic telescope (P60), covers a wavelength range of 370 - 920nm at high throughput and will classify transients from on-going and future surveys at a high rate. This will provide good statistics for common types of transients, and a better ability to discover and study rare and exotic ones. We present the science cases, optical design, and data reduction strategy of the SED Machine. The SED machine is currently being constructed at the Calofornia Institute of Technology, and will be comissioned on the spring of 2013.

Cryostat and CCD for MEGARA at GTC

NASA Astrophysics Data System (ADS)

Castillo-Domínguez, E.; Ferrusca, D.; Tulloch, S.; Velázquez, M.; Carrasco, E.; Gallego, J.; Gil de Paz, A.; Sánchez, F. M.; Vílchez Medina, J. M.

2012-09-01

MEGARA (Multi-Espectrógrafo en GTC de Alta Resolución para Astronomía) is the new integral field unit (IFU) and multi-object spectrograph (MOS) instrument for the GTC. The spectrograph subsystems include the pseudo-slit, the shutter, the collimator with a focusing mechanism, pupil elements on a volume phase holographic grating (VPH) wheel and the camera joined to the cryostat through the last lens, with a CCD detector inside. In this paper we describe the full preliminary design of the cryostat which will harbor the CCD detector for the spectrograph. The selected cryogenic device is an LN2 open-cycle cryostat which has been designed by the "Astronomical Instrumentation Lab for Millimeter Wavelengths" at INAOE. A complete description of the cryostat main body and CCD head is presented as well as all the vacuum and temperature sub-systems to operate it. The CCD is surrounded by a radiation shield to improve its performance and is placed in a custom made mechanical mounting which will allow physical adjustments for alignment with the spectrograph camera. The 4k x 4k pixel CCD231 is our selection for the cryogenically cooled detector of MEGARA. The characteristics of this CCD, the internal cryostat cabling and CCD controller hardware are discussed. Finally, static structural finite element modeling and thermal analysis results are shown to validate the cryostat model.

Broad-spectrum non-toxic antiviral nanoparticles with a virucidal inhibition mechanism

NASA Astrophysics Data System (ADS)

Cagno, Valeria; Andreozzi, Patrizia; D'Alicarnasso, Marco; Jacob Silva, Paulo; Mueller, Marie; Galloux, Marie; Le Goffic, Ronan; Jones, Samuel T.; Vallino, Marta; Hodek, Jan; Weber, Jan; Sen, Soumyo; Janeček, Emma-Rose; Bekdemir, Ahmet; Sanavio, Barbara; Martinelli, Chiara; Donalisio, Manuela; Rameix Welti, Marie-Anne; Eleouet, Jean-Francois; Han, Yanxiao; Kaiser, Laurent; Vukovic, Lela; Tapparel, Caroline; Král, Petr; Krol, Silke; Lembo, David; Stellacci, Francesco

2018-02-01

Viral infections kill millions yearly. Available antiviral drugs are virus-specific and active against a limited panel of human pathogens. There are broad-spectrum substances that prevent the first step of virus-cell interaction by mimicking heparan sulfate proteoglycans (HSPG), the highly conserved target of viral attachment ligands (VALs). The reversible binding mechanism prevents their use as a drug, because, upon dilution, the inhibition is lost. Known VALs are made of closely packed repeating units, but the aforementioned substances are able to bind only a few of them. We designed antiviral nanoparticles with long and flexible linkers mimicking HSPG, allowing for effective viral association with a binding that we simulate to be strong and multivalent to the VAL repeating units, generating forces (~190 pN) that eventually lead to irreversible viral deformation. Virucidal assays, electron microscopy images, and molecular dynamics simulations support the proposed mechanism. These particles show no cytotoxicity, and in vitro nanomolar irreversible activity against herpes simplex virus (HSV), human papilloma virus, respiratory syncytial virus (RSV), dengue and lenti virus. They are active ex vivo in human cervicovaginal histocultures infected by HSV-2 and in vivo in mice infected with RSV.

Diffusion of influenza viruses among migratory birds with a focus on the Southwest United States.

PubMed

Scotch, Matthew; Lam, Tommy Tsan-Yuk; Pabilonia, Kristy L; Anderson, Theodore; Baroch, John; Kohler, Dennis; DeLiberto, Thomas J

2014-08-01

The Southwest United States, including Arizona and New Mexico, has a diverse climate and is home to many different avian species. We sequenced the hemagglutinin (HA) gene of twenty influenza specimens for the years 2007-2009. This included four from Arizona, and sixteen from New Mexico. We analyzed the sequences and determined the following HA subtypes: H3, H4, H6, H8, and H11. For each subtype, we combined our virus sequences with those from a public database, and inferred phylogeographic models of influenza diffusion. Statistical phylogeography indicated that overall evolutionary diffusion of avian influenza viruses is geographically structured (p<0.05). In addition, we found that diffusion to the Southwest was often from nearby states including California. For H3, H4 and H6, the intra-flyway gene flow rates were significantly (p<0.001) higher than those of inter-flyway. Such rate difference was also observed in H8 and H11, yet, without statistical significance (p=0.132, p=0.190, respectively). Excluding any one flyway from the calculation generated similar results, suggesting that such barrier effect on gene flow rates is not exclusively produced by any single flyway. We also calculated the Bayes factor test for the significant non-zero rates between states and identified significant routes both within and across flyways. Such inter-flyway spread of influenza was probably the result of birds from four flyways co-mingling on breeding grounds in northern regions or marshaling on staging areas post breeding in Canada or Alaska, before moving south each fall. This study provides an initial analysis of evolutionary diffusion of avian influenza virus to and from the Southwest United States. However, more sequences from this region need to be generated to determine the role of host migration and other factors on influenza diffusion. Copyright © 2014 Elsevier B.V. All rights reserved.

Production, purification, crystallization and preliminary X-ray analysis of adeno-associated virus serotype 8

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lane, Michael Douglas; Nam, Hyun-Joo; Padron, Eric

2005-06-01

The production, purification, crystallization and preliminary X-ray crystallographic analysis of adeno-associated virus serotype 8 is reported. Adeno-associated viruses (AAVs) are actively being developed for clinical gene-therapy applications and the efficiencies of the vectors could be significantly improved by a detailed understanding of their viral capsid structures and the structural determinants of their tissue-transduction interactions. AAV8 is ∼80% identical to the more widely studied AAV2, but its liver-transduction efficiency is significantly greater than that of AAV2 and other serotypes. The production, purification, crystallization and preliminary X-ray crystallographic analysis of AAV8 viral capsids are reported. The crystals diffract X-rays to 3.0 Åmore » resolution using synchrotron radiation and belong to the hexagonal space group P6{sub 3}22, with unit-cell parameters a = 257.5, c = 443.5 Å. The unit cell contains two viral particles, with ten capsid viral protein monomers per crystallographic asymmetric unit.« less

Prevention of sexual transmission of Ebola in Liberia through a national semen testing and counselling programme for survivors: an analysis of Ebola virus RNA results and behavioural data.

PubMed

Soka, Moses J; Choi, Mary J; Baller, April; White, Stephen; Rogers, Emerson; Purpura, Lawrence J; Mahmoud, Nuha; Wasunna, Christine; Massaquoi, Moses; Abad, Neetu; Kollie, Jomah; Dweh, Straker; Bemah, Philip K; Christie, Athalia; Ladele, Victor; Subah, Oneykachi C; Pillai, Satish; Mugisha, Margaret; Kpaka, Jonathan; Kowalewski, Stephen; German, Emilio; Stenger, Mark; Nichol, Stuart; Ströher, Ute; Vanderende, Kristin E; Zarecki, Shauna Mettee; Green, Hugh Henry W; Bailey, Jeffrey A; Rollin, Pierre; Marston, Barbara; Nyenswah, Tolbert G; Gasasira, Alex; Knust, Barbara; Williams, Desmond

2016-10-01

Ebola virus has been detected in semen of Ebola virus disease survivors after recovery. Liberia's Men's Health Screening Program (MHSP) offers Ebola virus disease survivors semen testing for Ebola virus. We present preliminary results and behavioural outcomes from the first national semen testing programme for Ebola virus. The MHSP operates out of three locations in Liberia: Redemption Hospital in Montserrado County, Phebe Hospital in Bong County, and Tellewoyan Hospital in Lofa County. Men aged 15 years and older who had an Ebola treatment unit discharge certificate are eligible for inclusion. Participants' semen samples were tested for Ebola virus RNA by real-time RT-PCR and participants received counselling on safe sexual practices. Participants graduated after receiving two consecutive negative semen tests. Counsellors collected information on sociodemographics and sexual behaviours using questionnaires administered at enrolment, follow up, and graduation visits. Because the programme is ongoing, data analysis was restricted to data obtained from July 7, 2015, to May 6, 2016. As of May 6, 2016, 466 Ebola virus disease survivors had enrolled in the programme; real-time RT-PCR results were available from 429 participants. 38 participants (9%) produced at least one semen specimen that tested positive for Ebola virus RNA. Of these, 24 (63%) provided semen specimens that tested positive 12 months or longer after Ebola virus disease recovery. The longest interval between discharge from an Ebola treatment unit and collection of a positive semen sample was 565 days. Among participants who enrolled and provided specimens more than 90 days since their Ebola treatment unit discharge, men older than 40 years were more likely to have a semen sample test positive than were men aged 40 years or younger (p=0·0004). 84 (74%) of 113 participants who reported not using a condom at enrolment reported using condoms at their first follow-up visit (p<0·0001). 176 (46%) of 385 participants who reported being sexually active at enrolment reported abstinence at their follow-up visit (p<0·0001). Duration of detection of Ebola virus RNA by real-time RT-PCR varies by individual and might be associated with age. By combining behavioural counselling and laboratory testing, the Men's Health Screening Program helps male Ebola virus disease survivors understand their individual risk and take appropriate measures to protect their sexual partners. World Health Organization and the US Centers for Disease Control and Prevention. ©2016 World Health Organization; licensee Elsevier. This is an Open Access article published under the CC BY 3.0 IGO license which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. In any use of this article, there should be no suggestion that WHO endorses any specific organisation, products or services. The use of the WHO logo is not permitted. This notice should be preserved along with the article's original URL.

Avian influenza virus (H5N1); effects of physico-chemical factors on its survival

PubMed Central

Shahid, Muhammad Akbar; Abubakar, Muhammad; Hameed, Sajid; Hassan, Shamsul

2009-01-01

Present study was performed to determine the effects of physical and chemical agents on infective potential of highly pathogenic avian influenza (HPAI) H5N1 (local strain) virus recently isolated in Pakistan during 2006 outbreak. H5N1 virus having titer 108.3 ELD50/ml was mixed with sterilized peptone water to get final dilution of 4HA units and then exposed to physical (temperature, pH and ultraviolet light) and chemical (formalin, phenol crystals, iodine crystals, CID 20, virkon®-S, zeptin 10%, KEPCIDE 300, KEPCIDE 400, lifebuoy, surf excel and caustic soda) agents. Harvested amnio-allantoic fluid (AAF) from embryonated chicken eggs inoculated with H5N1 treated virus (0.2 ml/egg) was subjected to haemagglutination (HA) and haemagglutination inhibition (HI) tests. H5N1 virus lost infectivity after 30 min at 56°C, after 1 day at 28°C but remained viable for more than 100 days at 4°C. Acidic pH (1, 3) and basic pH (11, 13) were virucidal after 6 h contact time; however virus retained infectivity at pH 5 (18 h), 7 and 9 (more than 24 h). UV light was proved ineffectual in inactivating virus completely even after 60 min. Soap (lifebuoy®), detergent (surf excel®) and alkali (caustic soda) destroyed infectivity after 5 min at 0.1, 0.2 and 0.3% dilution. All commercially available disinfectants inactivated virus at recommended concentrations. Results of present study would be helpful in implementing bio-security measures at farms/hatcheries levels in the wake of avian influenza virus (AIV) outbreak. PMID:19327163

HIV, HCV, HBV and syphilis rate of positive donations among blood donations in Mali: lower rates among volunteer blood donors.

PubMed

Diarra, A; Kouriba, B; Baby, M; Murphy, E; Lefrere, J-J

2009-01-01

Good data on background seroprevalence of major transfusion transmitted infections is lacking in Mali. We gathered data on the rate of positive donations of human immunodeficiency virus (HIV), hepatitis C virus (HCV), hepatitis B virus (HBV) and syphilis among blood donations in Mali for calendar year 2007. Donations with repeatedly reactive results on screening enzyme immunoassay (EIA) were considered to be seropositive. Rate of positive donations per blood unit collected was 2.6% for HIV, 3.3% for HCV, 13.9% for hepatitis B surface antigen (HBsAg) and 0.3% for syphilis. For HIV, HBsAg and syphilis, rate of positive donations was significantly (p<0.001) higher among donations from replacement donors than those from volunteer donors, while HCV rate of positive donations was similar in the two groups. Rate of positive donations was also significantly (p<0.0001) lower in blood units from regular than from first-time donors. These data reinforce WHO recommendations for increasing the number of regular, volunteer blood donors in Africa.

Usefulness of multiplex PCR methods and respiratory viruses’ distribution in children below 15 years old according to age, seasons and clinical units in France: A 3 years retrospective study

PubMed Central

Collin, Gilles; Ichou, Houria; Charpentier, Charlotte; Bendhafer, Samia; Dumitrescu, Madalina; Allal, Lahcene; Cojocaru, Bogdan; Desfrère, Luc; Descamps, Diane; Mandelbrot, Laurent; Houhou-Fidouh, Nadhira

2017-01-01

Background To date, only influenza and RSV testing are recommended for respiratory viruses’ detection in paediatric units. In this study, we described, according to seasons, ages and clinical units, the results obtained in children (<15 years old) by multiplex-PCR (mPCR) tests allowing a quick and wide range detection of all respiratory viruses. These results were also compared with RSV specific detection. Methods All nasopharyngeal mPCR and RSV tests requested by clinicians in our French teaching hospitals group between 2011 and 2014 were retrospectively included. All repeated samples for the same children in the same month were discarded. Results Of the 381 mPCR tests (344 children) performed, 51.4% were positive. Positivity and viral co-infection rates were higher in the 6–36 months old strata (81% and 25%, p<0.0001 and p = 0.04, respectively). Viral distribution showed strong variations across ages. During specific influenza epidemic periods, only 1/39 (2.5%) mPCR tests were positive for influenza and 19/39 (48.7%) for other viruses. During specific RSV epidemic periods, only 8/46 (17.4%) mPCR tests were positive for RSV and 14/46 (30.4%) for other viruses. 477/1529 (31.2%) of RSV immunochromatography-tests were positive. Among the negatives immunochromatography-test also explored by mPCR, 28/62 (31%) were positive for other respiratory viruses. Conclusion This study provides a wide description of respiratory viruses’ distribution among children in hospital settings using mPCR over 3 years. It emphasizes the number of undiagnosed respiratory viruses according to the current diagnosis practice in France and gives a better picture of respiratory viruses identified in hospital settings by mPCR all over the year in France. PMID:28235002

No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom.

PubMed

White, Ellen; Smit, Erasmus; Churchill, Duncan; Collins, Simon; Booth, Clare; Tostevin, Anna; Sabin, Caroline; Pillay, Deenan; Dunn, David T

2016-11-01

Concern has been expressed that tenofovir-containing regimens may have reduced effectiveness in the treatment of human immunodeficiency virus type 1 (HIV-1) subtype C infections because of a propensity for these viruses to develop a key tenofovir-associated resistance mutation. We evaluated whether subtype influenced rates of virological failure in a cohort of 8746 patients from the United Kingdom who received a standard tenofovir-containing first-line regimen and were followed for a median of 3.3 years. In unadjusted analyses, the rate of failure was approximately 2-fold higher among patients infected with subtype C virus as compared to those with subtype B virus (hazard ratio [HR], 1.86; 95% confidence interval [CI], 1.50-2.31; P < .001). However, the increased risk was greatly attenuated in analyses adjusting for demographic and clinical factors (adjusted HR, 1.14; 95% CI, .83-1.58; P = .41). There were no differences between subtypes C and subtypes non-B and non-C in either univariate or multivariate analysis. These observations imply there is no intrinsic effect of viral subtype on the efficacy of tenofovir-containing regimens. © The Author 2016. Published by Oxford University Press for the Infectious Diseases Society of America.

Outcome of Encephalitis in Pediatric Intensive Care Unit.

PubMed

Hon, Kam-Lun Ellis; Tsang, Yin Ching K; Chan, Lawrence C N; Tsang, Hing Wing; Wong, Kit Ying Kitty; Wu, Yuet Hong Gordon; Chan, Paul K S; Cheung, Kam Lau; Ng, Eric Y K; Totapally, Balagangadhar R

2016-10-01

To review pathogens, morbidity and mortality in pediatric intensive care unit (PICU) patients with viral and infectious encephalitis. Retrospective chart review of all patients with encephalitis admitted to the PICU between 2002 and 2014 was done. Encephalitis (n = 46) accounted for 2.7 % of PICU admissions, but 11.8 % PICU mortality over a 12-y period. A microorganism (primarily virus) was identified in 59 % of encephalitis patients in the PICU. Enteroviruses and herpes viruses were isolated from the cerebrospinal fluid (CSF). Respiratory viruses [such as respiratory syncytial virus (RSV) and influenza viruses] and enteric viruses (such as rotavirus and norovirus) were obtained in the nasopharyngeal aspirate and stool respectively, but undetectable from the CSF. More than one-fourth patients with encephalitis died in the PICU. Boys accounted for 85 % of nonsurvivors and 52 % survivors (p = 0.038). Mechanical ventilation, inotrope, intravenous immunoglobulin (IVIG) and corticosteroid usage were significantly higher among non-survivors (p 0.001-0.044). Binomial logistic regression showed that patients who received corticosteroid had a lower chance of survival than those who did not after adjusting for gender, IVIG and mechanical ventilation (adjusted odd ratio = 0.071, 95 % CI 0.006-0.881; p 0.039). Eighteen (55 %) of the survivors had moderate-to-severe neurodevelopmental impairments. Encephalitis is associated with significant mortality despite intensive care. Over 25 % case died and 55 % of survivors had moderate-to-severe neurodevelopmental impairments. There appeared to be no emerging outbreaks of encephalitis during the 15-y study period.

VizieR Online Data Catalog: HeI 5876 & 10830Å EWs of solar-type stars (Andretta+, 2017)

NASA Astrophysics Data System (ADS)

Andretta, V.; Giampapa, M. S.; Covino, E.; Reiners, A.; Beeck, B.

2017-11-01

A total of 134 FEROS spectra (R=48000) of our targets (including telluric standards) were acquired on the night of UT 2011 December 6-7; spectral coverage from 3500 to 9200Å. The Fiber Extended-range Optical Spectrograph (FEROS) was mounted at the 2.2m Max-Planck Gesellschaft/European Southern Observatory (MPG/ESO) telescope at La Silla (Chile). The HeIλ10830 spectroscopic observations were carried out on the same night as the FEROS D3 observations, using the CRyogenic high-resolution InfraRed Echelle Spectrograph (CRIRES), mounted at Unit Telescope 1 (Antu) of the VLT array at Cerro Paranal. The details of the observations is given in table 1. (3 data files).

On-instrument wavefront sensor design for the TMT infrared imaging spectrograph (IRIS) update

NASA Astrophysics Data System (ADS)

Dunn, Jennifer; Reshetov, Vladimir; Atwood, Jenny; Pazder, John; Wooff, Bob; Loop, David; Saddlemyer, Leslie; Moore, Anna M.; Larkin, James E.

2014-08-01

The first light instrument on the Thirty Meter Telescope (TMT) project will be the InfraRed Imaging Spectrograph (IRIS). IRIS will be mounted on a bottom port of the facility AO instrument NFIRAOS. IRIS will report guiding information to the NFIRAOS through the On-Instrument Wavefront Sensor (OIWFS) that is part of IRIS. This will be in a self-contained compartment of IRIS and will provide three deployable wavefront sensor probe arms. This entire unit will be rotated to provide field de-rotation. Currently in our preliminary design stage our efforts have included: prototyping of the probe arm to determine the accuracy of this critical component, handling cart design and reviewing different types of glass for the atmospheric dispersion.

ZTF Bright Transient Survey classifications

NASA Astrophysics Data System (ADS)

Graham, M. L.; Bellm, E.; Bektesevic, D.; Eadie, G.; Huppenkothen, D.; Davenport, J. R. A.; Fremling, C.; Sharma, Y.; Kulkarni, S. R.; Walters, R.; Blagorodnova, N.; Neill, J.; Miller, A. A.; Taddia, F.; Lunnan, R.; Taggart, K.; Perley, D. A.; Goobar, A.

2018-06-01

The Zwicky Transient Facility (ZTF; ATel #11266) Bright Transient Survey (BTS; ATel #11688) reports classifications of the following targets. Spectra have been obtained with the Dual Imaging Spectrograph (range 340-1000nm, spectral resolution R 1000) mounted on the 3.5m telescope at Apache Point Observatory, the Spectral Energy Distribution Machine (SEDM) (range 350-950nm, spectral resolution R 100) mounted on the Palomar 60-inch (P60) telescope (Blagorodnova et. al. 2018, PASP, 130, 5003), or the Andalucia Faint Object Spectrograph and Camera (ALFOSC) on the 2.5m Nordic Optical Telescope (NOT).

VizieR Online Data Catalog: Wolf-Rayet population in NGC 5068 (Bibby+, 2012)

NASA Astrophysics Data System (ADS)

Bibby, J. L.; Crowther, P. A.

2012-10-01

NGC 5068 has been imaged with the ESO VLT and Focal Reduced Low-dispersion Spectrograph #1 (FORS1) covering a field of view of 6.8x6.8arcmin2 with a plate scale of 0.25arcsec/pixel. Both broad- and narrow-band imaging were obtained on 2008 April 7 under program ID 081.B-0289 (P.I. Crowther). In addition, the Gemini Multi-Object Spectrograph (GMOS) on the Gemini-South telescope was used to obtain follow-up spectroscopy in 2009 March-April under program ID GS-2009A-Q-20 (P.I. Crowther). The R150 grating was placed at a central wavelength of 510 and 530nm with a dispersion of ~3.5Å/pix. (2 data files).

Cracking the Code of Faraway Worlds

NASA Technical Reports Server (NTRS)

2007-01-01

This infrared data from NASA's Spitzer Space Telescope - called a spectrum - tells astronomers that a distant gas planet, a so-called 'hot Jupiter' called HD 189733b, might be smothered with high clouds. It is one of the first spectra of an alien world.

A spectrum is created when an instrument called a spectrograph cracks light from an object open into a rainbow of different wavelengths. Patterns or ripples within the spectrum indicate the presence, or absence, of molecules making up the object.

Astronomers using Spitzer's spectrograph were able to obtain infrared spectra for two so-called 'transiting' hot-Jupiter planets using the 'secondary eclipse' technique. In this method, the spectrograph first collects the combined infrared light from the planet plus its star, then, as the planet is eclipsed by the star, the infrared light of just the star. Subtracting the latter from the former reveals the planet's own rainbow of infrared colors.

Astronomers were perplexed when they first saw the infrared spectrum above. It doesn't look anything like what theorists had predicted. Theorists thought the spectra of hot, Jupiter-like planets like this one would be filled with the signatures of molecules in the planets' atmospheres. But the spectrum doesn't show any molecules, and is instead what astronomers call 'flat.' For example, theorists thought there'd be a strong signature of water in the form of a big drop in the wavelength range between 7 and 10 microns. The fact that water is not detected may indicate that it is hidden underneath a thick blanket of high, dry clouds. The average brightness of the spectrum is also a bit lower than theoretical predictions, suggesting that very high winds are rapidly moving the terrific heat of the noonday sun from the day side of HD 189733b to the night side.

This spectrum was produced by Dr. Carl Grillmair of NASA's Spitzer Science Center at the California Institute of Technology in Pasadena, Calif., and his colleagues. The data were taken by Spitzer's infrared spectrograph on November 22, 2006.

The Contributions of the WIYN Observatory to Undergraduate Education

NASA Astrophysics Data System (ADS)

Hooper, Eric; Consortium, WIYN

2014-01-01

Over its nearly 20 year history the WIYN Observatory has provided crucial data for numerous undergraduate research projects at the partner institutions (University of Wisconsin-Madison, Indiana University, and Yale University) plus others who access the telescope via national time from NOAO. WIYN and its instruments have served both undergraduates who are local to each institution, as well as those who have a temporary tenure as Research Experience for Undergraduates (REU) students. The topics of this work range widely, and only a few examples are listed here. Numerous studies of stars have been undertaken by undergraduates, from rotation velocities of pre-main sequence stars (Rhode et al.) to dynamical heating mechanisms in open clusters (Friel et al.). Extragalactic investigations range from a study of cold ISM in galaxies near the centers of rich clusters (Gallagher & Hooper, et al.) to the stellar populations of post-starburst galaxies hosting low-level AGN (Wolf & Hooper, et al.). Students have made wide use of WIYN's long established suite of facility instruments, which currently includes the Hydra multi-object fiber spectrograph, the SparsePak integral field unit fiber spectrograph, and the WHIRC near-infrared imager. A current undergraduate is a key player in final laboratory testing of two new integral field units that will come to WIYN soon. Finally, the new large format imager pODI currently is in science operation, soon to be followed by an upgrade to nearly four times the current imaging area, a powerful tool that will join the others in contributing to undergraduate research and education. This presentation is a continuation of the overview of WIYN contributions to education that began with a discussion of graduate education at the Indianapolis AAS (Hooper, AAS Meeting #222, #214.23).

Production, Purification and Preliminary X-ray Crystallographic Studies of Adeno-Associated Virus Serotype 9

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mitchell, M.; Nam, H; Carter, A

2009-01-01

Adeno-associated virus (AAV) serotype 9, which is under development for gene-delivery applications, shows significantly enhanced capsid-associated transduction efficiency in muscle compared with other AAV serotypes. With the aim of characterizing the structural determinants of this property, the purification, crystallization and preliminary X-ray crystallographic analyses of the AAV9 viral capsid are reported. The crystals diffracted X-rays to 2.8 A resolution using synchrotron radiation and belonged to the trigonal space group P32, with unit-cell parameters a = b = 251.0, c = 640.0 A. There are three complete viral capsids in the crystal unit cell. The orientation and position of the asymmetricmore » unit capsid have been determined by molecular-replacement methods and structure determination is in progress.« less

Co-infection of hepatitis B and hepatitis C virus in human immunodeficiency virus-infected patients in New York City, United States.

PubMed

Kim, Jong-Hun; Psevdos, George; Suh, Jin; Sharp, Victoria-Lee

2008-11-21

To study the prevalence and risk factors associated with triple infection with human immunodeficiency virus (HIV)/hepatitis B virus (HBV)/hepatitis C virus (HCV) in an urban clinic population. Retrospective chart review of 5639 patients followed at St. Luke's-Roosevelt Hospital HIV Clinic (Center for Comprehensive Care) in New York City, USA from January 1999 to May 2007. The following demographic characteristics were analyzed: age, sex, race and HIV risk factors. A multiple logistic regression analysis was performed to evaluate the influence of demographic factors on acquisition of these viruses. HIV/HBV, HIV/HCV and HIV/HBV/HCV infections were detected in 252/5639 (4.47%), 1411/5639 (25.02%) and 89/5639 (1.58%) patients, respectively. HIV/HBV co-infections were associated with male gender (OR 1.711; P = 0.005), black race (OR 2.091; P < 0.001), men having sex with men (MSM) (OR 1.747; P = 0.001), intravenous drug use (IDU) (OR 0.114; P < 0.001), IDU and heterosexual activity (OR 0.247; P = 0.018), or unknown (OR 1.984; P = 0.004). HIV/HCV co-infections were associated with male gender (OR 1.241; P = 0.011), black race (OR 0.788; P = 0.036), MSM (OR 0.565; P < 0.001), IDU (OR 8.956; P < 0.001), IDU and heterosexual activity (OR 9.106; P < 0.001), IDU and MSM (OR 9.179; P < 0.001), or transfusion (OR 3.224; P < 0.001). HIV/HBV/HCV co-infections were associated with male gender (OR 2.156; P = 0.015), IDU (OR 6.345; P < 0.001), IDU and heterosexual activity (OR 9.731; P < 0.001), IDU and MSM (OR 9.228; P < 0.001), or unknown (OR 4.219; P = 0.007). Our study demonstrates that co-infection with HBV/HCV/HIV is significantly associated with IDU. These results highlight the need to intensify education and optimal models of integrated care, particularly for populations with IDU, to reduce the risk of viral transmission.

The influence of motion and stress on optical fibers

NASA Astrophysics Data System (ADS)

Murphy, Jeremy D.; Hill, Gary J.; MacQueen, Phillip J.; Taylor, Trey; Soukup, Ian; Moreira, Walter; Cornell, Mark E.; Good, John; Anderson, Seth; Fuller, Lindsay; Lee, Hanshin; Kelz, Andreas; Rafal, Marc; Rafferty, Tom; Tuttle, Sarah; Vattiat, Brian

2012-09-01

We report on extensive testing carried out on the optical fibers for the VIRUS instrument. The primary result of this work explores how 10+ years of simulated wear on a VIRUS fiber bundle affects both transmission and focal ratio degradation (FRD) of the optical fibers. During the accelerated lifetime tests we continuously monitored the fibers for signs of FRD. We find that transient FRD events were common during the portions of the tests when motion was at telescope slew rates, but dropped to negligible levels during rates of motion typical for science observation. Tests of fiber transmission and FRD conducted both before and after the lifetime tests reveal that while transmission values do not change over the 10+ years of simulated wear, a clear increase in FRD is seen in all 18 fibers tested. This increase in FRD is likely due to microfractures that develop over time from repeated flexure of the fiber bundle, and stands in contrast to the transient FRD events that stem from localized stress and subsequent modal diffusion of light within the fibers. There was no measurable wavelength dependence on the increase in FRD over 350 nm to 600 nm. We also report on bend radius tests conducted on individual fibers and find the 266 μm VIRUS fibers to be immune to bending-induced FRD at bend radii of R 10 cm. Below this bend radius FRD increases slightly with decreasing radius. Lastly, we give details of a degradation seen in the fiber bundle currently deployed on the Mitchell Spectrograph (formally VIRUS-P) at McDonald Observatory. The degradation is shown to be caused by a localized shear in a select number of optical fibers that leads to an explosive form of FRD. In a few fibers, the overall transmission loss through the instrument can exceed 80%. These results are important for the VIRUS instrument, and for both current and proposed instruments that make use of optical fibers, particularly when the fibers are in continual motion during an observation, or experience repeated mechanical stress during their deployment.

Evaluation of Immunochromatographic Test for Dual Detection of Noroviruses and Group A Rotaviruses in Stool Samples.

PubMed

Khamrin, Pattara; Kumthip, Kattareeya; Thongprachum, Aksara; Takanashi, Sayaka; Okitsu, Shoko; Maneekarn, Niwat; Hayakawa, Satoshi; Ushijima, Hiroshi

2018-05-01

Viral enteric infections, such as noroviruses and rotaviruses are considered as the major causes of acute gastroenteritis in young children and elderly people all over the world. These viruses are responsible for numerous outbreaks of nonbacterial gastroenteritis in several settings such as hospitals, day care centers, nursing homes, and restaurants. Therefore, a rapid and sensitive diagnostic tool for virus detections could be helpful for disease control. A new immunochromatographic test for the dual detection of noroviruses and group A rotaviruses was evaluated by using specimens that were known to be positive for noroviruses and rotaviruses, as well as other diarrheal viruses. The sensitivity of detections for noroviruses and group A rotaviruses were 89.5% and 100%, respectively, while the specificity was 100% for both viruses. This immunochromatographic test was reactive to several norovirus and group A rotavirus genotypes (NoV GII.2, GII.3, GII.4, GII.6, GII.7, GII.17 and RVA G1P[8], G2P[4], G3P[8], G8P[8], G9P[8]). The speed and ease of use of the immunochromatographic test makes this kit particularly attractive as an alternative method for the detections of noroviruses and group A rotaviruses in the primary care unit.

Antitumor and immunostimulatory activities of a genotype V recombinant attenuated veterinary Newcastle disease virus vaccine.

PubMed

Ortega-Rivera, Oscar Antonio; Quintanar, J Luis; Del Toro-Arreola, Susana; Alpuche-Solis, Ángel G; Esparza-Araiza, Mayra J; Salinas, Eva

2018-01-01

Antitumor conventional treatments including chemo/radiotherapy result in several side effects and non-specificity. Therapies including the use of oncolytic viruses, particularly the Newcastle disease virus (NDV), have emerged as an attractive alternative due to their capacity to kill cancer cells directly or through stimulation of the immune system. In the present study, a commercial vaccine composed of a recombinant attenuated NDV strain P05 (rNDV-P05) was assessed for antitumor and immunostimulatory activity. Firstly, hemagglutination activity was evaluated at different pH and temperature conditions. Then, cancer cell lines and peripheral blood mononuclear cells (PBMC) were co-cultured with or without rNDV-P05 and cytoplasmic nucleosomes were measured by enzyme-linked immunosorbent assay (ELISA) as an apoptosis indicator. Antitumor cytokines produced by PBMC in response to the virus were analyzed by ELISA and reverse transcription quantitative polymerase chain reaction. Characterization of rNDV-P05 indicates that the virus is slightly sensible to acid and basic pH, and stable at temperatures no greater than 42°C. The majority of cell lines developed apoptosis in co-culture with rNDV-P05 in a dose-time dependent manner. The highest level of HeLa, HCC1954 and HepG2 cell apoptosis was at 48 h/50 hemagglutination units (HU), and HL-60 was 24 h/50 HU. A549 cell line and PBMC did not show sensitivity to apoptosis by the virus. PBMC from healthy donors stimulated with the rNDV-P05 increased significantly the levels of interferon (IFN)-α, IFN-γ, tumor necrosis factor (TNF)-α and soluble TNF-related apoptosis-inducing ligand in culture supernatants, as well as their mRNA expression. These results demonstrate that the pro-apoptotic effect of rNDV-P05 and its magnitude is specific to particular tumor cell lines and is not induced on PBMC; and the virus stimulates the expression of several key antitumor cytokines. This study promotes the use of rNDV-P05 in an alternate application of different viral strains during virotherapy with NDV.

Antitumor and immunostimulatory activities of a genotype V recombinant attenuated veterinary Newcastle disease virus vaccine

PubMed Central

Ortega-Rivera, Oscar Antonio; Quintanar, J Luis; Del Toro-Arreola, Susana; Alpuche-Solis, Ángel G; Esparza-Araiza, Mayra J; Salinas, Eva

2018-01-01

Antitumor conventional treatments including chemo/radiotherapy result in several side effects and non-specificity. Therapies including the use of oncolytic viruses, particularly the Newcastle disease virus (NDV), have emerged as an attractive alternative due to their capacity to kill cancer cells directly or through stimulation of the immune system. In the present study, a commercial vaccine composed of a recombinant attenuated NDV strain P05 (rNDV-P05) was assessed for antitumor and immunostimulatory activity. Firstly, hemagglutination activity was evaluated at different pH and temperature conditions. Then, cancer cell lines and peripheral blood mononuclear cells (PBMC) were co-cultured with or without rNDV-P05 and cytoplasmic nucleosomes were measured by enzyme-linked immunosorbent assay (ELISA) as an apoptosis indicator. Antitumor cytokines produced by PBMC in response to the virus were analyzed by ELISA and reverse transcription quantitative polymerase chain reaction. Characterization of rNDV-P05 indicates that the virus is slightly sensible to acid and basic pH, and stable at temperatures no greater than 42°C. The majority of cell lines developed apoptosis in co-culture with rNDV-P05 in a dose-time dependent manner. The highest level of HeLa, HCC1954 and HepG2 cell apoptosis was at 48 h/50 hemagglutination units (HU), and HL-60 was 24 h/50 HU. A549 cell line and PBMC did not show sensitivity to apoptosis by the virus. PBMC from healthy donors stimulated with the rNDV-P05 increased significantly the levels of interferon (IFN)-α, IFN-γ, tumor necrosis factor (TNF)-α and soluble TNF-related apoptosis-inducing ligand in culture supernatants, as well as their mRNA expression. These results demonstrate that the pro-apoptotic effect of rNDV-P05 and its magnitude is specific to particular tumor cell lines and is not induced on PBMC; and the virus stimulates the expression of several key antitumor cytokines. This study promotes the use of rNDV-P05 in an alternate application of different viral strains during virotherapy with NDV. PMID:29399179

Crystallization of the Fab from a human monoclonal antibody against gp 41 of human immunodeficiency virus type I

NASA Technical Reports Server (NTRS)

Casale, Elena; He, Xiao-Min; Snyder, Robert S.; Carter, Daniel C.; Wenisch, Elisabeth; Jungbauer, Alois; Tauer, Christa; Ruker, Florian; Righetti, Pier Giorgio

1990-01-01

A monoclonal IgG antibody directed against gp 41 from the human immunodeficiency virus (HIV-1) has been crystallized in both intact and Fab forms. Crystals of the intact antibody grow as tetragonal-like prisms too small for conventional X-ray analysis. However, the Fab portion of the antibody produces suitable platelike crystals which belong to the space group P2(1)2(1)2(1) with unit cell constants of a = 66.5 A, b = 74.3 A, and c = 105.3 A. There is one molecule of Fab in the asymmetric unit. The Fab crystals show diffraction to d-spacings less than 3.0 A.

Production, purification, crystallization and preliminary X-ray structural studies of adeno-associated virus serotype 5

DOE Office of Scientific and Technical Information (OSTI.GOV)

DiMattia, Michael; Govindasamy, Lakshmanan; Levy, Hazel C.

2005-10-01

The production, purification, crystallization and preliminary crystallographic analysis of empty adeno-associated virus serotype 5 capsids are reported. Adeno-associated virus serotype 5 (AAV5) is under development for gene-therapy applications for the treatment of cystic fibrosis. To elucidate the structural features of AAV5 that control its enhanced transduction of the apical surface of airway epithelia compared with other AAV serotypes, X-ray crystallographic studies of the viral capsid have been initiated. The production, purification, crystallization and preliminary crystallographic analysis of empty AAV5 viral capsids are reported. The crystals diffract X-rays to beyond 3.2 Å resolution using synchrotron radiation and belong to the orthorhombicmore » space group P2{sub 1}2{sub 1}2{sub 1}, with unit-cell parameters a = 264.7, b = 447.9, c = 629.7 Å. There is one complete T = 1 viral capsid per asymmetric unit. The orientation and position of the viral capsid in the asymmetric unit have been determined by rotation and translation functions, respectively, and the AAV5 structure determination is in progress.« less

Studying focal ratio degradation of optical fibres with a core size of 50 μm for astronomy

NASA Astrophysics Data System (ADS)

Oliveira, A. C.; de Oliveira, L. S.; dos Santos, J. B.

2005-01-01

Along with the spectral attenuation properties, the focal ratio degradation (FRD) properties of optical fibres are the most important for instrumental applications in astronomy. We present a special study about the FRD of optical fibres with a core size of 50 μm to evaluate the effects of stress when mounting the fibre. Optical fibres like this were used to construct the Eucalyptus integral field unit. This fibre is very susceptible to the FRD effects, especially after the removal of the acrylate buffer. This operation is sometimes necessary to allow close packing of the fibres at the input to the spectrograph. Without the acrylate buffer, the protection of the cladding and core of the fibre may be easily damaged. In the near future, fibres of this size will be used to build the Southern Observatory for Astronomical Research (SOAR) integral field unit spectrograph (SIFS) and other instruments. It is important to understand the correct procedure which minimizes any increase in FRD during the construction of the instrument.

ULTIMATE: a deployable multiple integral field unit for Subaru

NASA Astrophysics Data System (ADS)

Ellis, S. C.; Zhelem, Ross; Brown, David; Staszak, Nicholas F.; Lidman, Chris; Nataf, David M.; Casey, Andrew R.; Xavier, Pascal; Sheinis, Andrew; Gillingham, Peter; Tims, Julia; Lawrence, Jon; Bryant, Julia; Sharp, Rob

2016-08-01

ULTIMATE is an instrument concept under development at the AAO, for the Subaru Telescope, which will have the unique combination of ground layer adaptive optics feeding multiple deployable integral field units. This will allow ULTIMATE to probe unexplored parameter space, enabling science cases such as the evolution of galaxies at z 0:5 to 1.5, and the dark matter content of the inner part of our Galaxy. ULTIMATE will use Starbugs to position between 7 and 13 IFUs over a 14 × 8 arcmin field-of-view, pro- vided by a new wide-field corrector. All Starbugs can be positioned simultaneously, to an accuracy of better than 5 milli-arcsec within the typical slew-time of the telescope, allowing for very efficient re-configuration between observations. The IFUs will feed either the near-infrared nuMOIRCS or the visible/ near-infrared PFS spectrographs, or both. Future possible upgrades include the possibility of purpose built spectrographs and incorporating OH suppression using fibre Bragg gratings. We describe the science case and resulting design requirements, the baseline instrument concept, and the expected performance of the instrument.

Design study of the PEPSI polarimeter for the LBT

NASA Astrophysics Data System (ADS)

Hofmann, A.; Strassmeier, K. G.; Woche, M.

2002-07-01

We present the conceptual design of the two polarimetric channels of the PEPSI spectropolarimeter for the Large Binocular Telescope (LBT). The two direct Gregorian f/15 focii of the LBT will take up two identical but independent full-Stokes IQUV polarimeters that themselves fiberfeed a high-resolution Echelle spectrograph (see the accompanying paper by Zerbi et al.). The polarizing units will be based on super-achromatic Fresnel-rhomb retarders and Foster prisms. A total of four fibers are foreseen to simultaneously direct two ordinary and two extraordinary light beams to the Echelle spectrograph. Both polarimetric units are layed out in a modular design, each one optimized to the polarization state in which it is used. A number of observing modes can be chosen that are optimized to the type of polarization that is expected from the target, e.g. circularly and linearly polarized light simultaneously, or linearly polarized light in both polarimeters, or integral light from one and polarized light from the other telescope, a.s.o.. Calibration would be provided for each polarimeter separately.

VizieR Online Data Catalog: M6 open cluster: star members properties (Kilicoglu+, 2016)

NASA Astrophysics Data System (ADS)

Kilicoglu, T.; Monier, R.; Richer, J.; Fossati, L.; Albayrak, B.

2018-03-01

The spectra of 104 objects in the region of M6 were obtained using the Fibre Large Array Multi Element Spectrograph (FLAMES) instrument with the GIRAFFE spectrograph attached to the Unit 2 Kueyen of the Very Large Telescopes at the European Southern Observatory (ESO) by one of us (L.F.). The instrument settings and target selection were carried out in the same way as described by Fossati et al. (2011MNRAS.413.1132F). We primarily considered 56 targets with Teff>6100 K and spectra with S/N~100, and selected 44 targets to perform a more thorough spectral analysis considering the membership from 3 criteria: (i) proper motions, (ii) radial velocity, and (iii) position of the stars in the Hertzsprung-Russell (HR) diagram (Table 3). (6 data files).

Development of compact integral field unit for spaceborne solar spectro-polarimeter

NASA Astrophysics Data System (ADS)

Suematsu, Y.; Koyama, M.; Sukegawa, T.; Enokida, Y.; Saito, K.; Okura, Y.; Nakayasu, T.; Ozaki, S.; Tsuneta, S.

2017-11-01

A 1.5-m class aperture Solar Ultra-violet Visible and IR telescope (SUVIT) and its instruments for the Japanese next space solar mission SOLAR-C [1] are under study to obtain critical physical parameters in the lower solar atmosphere. For the precise magnetic field measurements covering field-of-view of 3 arcmin x3 acmin, a full stokes polarimetry at three magnetic sensitive lines in wavelength range of 525 nm to 1083 nm with a four-slit spectrograph of two dinesional image scanning mechanism is proposed: one is a true slit and the other three are pseudo-slits from integral field unit (IFU). To suit this configuration, besides a fiber bundle IFU, a compact mirror slicer IFU is designed and being developed. Integral field spectroscopy (IFS), which is realized with IFU, is a two dimensional spectroscopy, providing spectra simultaneously for each spatial direction of an extended two-dimensional field. The scientific advantages of the IFS for studies of localized and transient solar surface phenomena are obvious. There are in general three methods [2][3] to realize the IFS depending on image slicing devices such as a micro-lenslet array, an optical fiber bundle and a narrow rectangular image slicer array. So far, there exist many applications of the IFS for ground-based astronomical observations [4]. Regarding solar instrumentations, the IFS of micro-lenslet array was done by Suematsu et al. [5], the IFS of densely packed rectangular fiber bundle with thin clads was realized [6] and being developed for 4-m aperture solar telescope DKIST by Lin [7] and being considered for space solar telescope SOLAR-C by Katsukawa et al. [8], and the IFS with mirror slicer array was presented by Ren et al. [9] and under study for up-coming large-aperture solar telescope in Europe by Calcines et al. [10] From the view point of a high efficiency spectroscopy, a wide wavelength coverage, a precision spectropolarimetry and space application, the image slicer consisting of all reflective optics is the best option among the three. However, the image slicers are presently limited either by their risk in the case of classical glass polishing techniques (see Vivès et al. [11] for recent development) or by their optical performances when constituted by metallic mirrors. For space instruments, small sized units are much advantageous and demands that width of each slicer mirror is as narrow as an optimal slit width (< 100 micron) of spectrograph which is usually hard to manufacture with glass polishing techniques. On the other hand, Canon is developing a novel technique for such as high performance gratings which can be applicable for manufacturing high optical performance metallic mirrors of small dimensions. For the space-borne spectrograph of SUVIT to be aboard SOLAR-C, we designed the IFS made of a micro image slicer of 45 arrayed 30-micron-thick metal mirrors and a pseudo-pupil metal mirror array re-formatting three pseudo-slits; the design is feasible for optical configuration sharing a spectrograph with a conventional real slit. According to the optical deign, Canon manufactured a prototype IFU for evaluation, demonstrating high performances of micro image slicer and pupil mirrors; enough small micro roughness for visible light spectrographs, sharp edges for efficient image slices, surface figure for high image quality, etc. In the following, we describe the optical design of IFU feasible for space-borne spectrograph, manufacturing method to attain high optical performance of metal mirrors developed by Canon, and resulted performance of prototype IFU in detail.

Metabolic syndrome increases the risk of primary liver cancer in the United States: a study in the SEER-Medicare database.

PubMed

Welzel, Tania M; Graubard, Barry I; Zeuzem, Stefan; El-Serag, Hashem B; Davila, Jessica A; McGlynn, Katherine A

2011-08-01

Incidence rates of hepatocellular carcinoma (HCC) and intrahepatic cholangiocarcinoma (ICC) have increased in the United States. Metabolic syndrome is recognized as a risk factor for HCC and a postulated one for ICC. The magnitude of risk, however, has not been investigated on a population level in the United States. We therefore examined the association between metabolic syndrome and the development of these cancers. All persons diagnosed with HCC and ICC between 1993 and 2005 were identified in the Surveillance, Epidemiology, and End Results (SEER)-Medicare database. For comparison, a 5% sample of individuals residing in the same regions as the SEER registries of the cases was selected. The prevalence of metabolic syndrome as defined by the U.S. National Cholesterol Education Program Adult Treatment Panel III criteria, and other risk factors for HCC (hepatitis B virus, hepatitis C virus, alcoholic liver disease, liver cirrhosis, biliary cirrhosis, hemochromatosis, Wilson's disease) and ICC (biliary cirrhosis, cholangitis, cholelithiasis, choledochal cysts, hepatitis B virus, hepatitis C virus, alcoholic liver disease, cirrhosis, inflammatory bowel disease) were compared among persons who developed cancer and those who did not. Logistic regression was used to calculate odds ratios and 95% confidence intervals. The inclusion criteria were met by 3649 HCC cases, 743 ICC cases, and 195,953 comparison persons. Metabolic syndrome was significantly more common among persons who developed HCC (37.1%) and ICC (29.7%) than the comparison group (17.1%, P<0.0001). In adjusted multiple logistic regression analyses, metabolic syndrome remained significantly associated with increased risk of HCC (odds ratio=2.13; 95% confidence interval=1.96-2.31, P<0.0001) and ICC (odds ratio=1.56; 95% confidence interval=1.32-1.83, P<0.0001). Metabolic syndrome is a significant risk factor for development of HCC and ICC in the general U.S. population. Copyright © 2011 American Association for the Study of Liver Diseases.

System engineering at the MEGARA project

NASA Astrophysics Data System (ADS)

Pérez-Calpena, A.; García-Vargas, María. Luisa; Gil de Paz, A.; Gallego Maestro, J.; Carrasco Licea, E.; Sánchez Moreno, F.; Iglesias-Páramo, J.

2014-08-01

MEGARA (Multi-Espectrógrafo en GTC de Alta Resolución para Astronomía) is a facility instrument of the 10.4m GTC (La Palma, Spain) working at optical wavelengths that provides both Integral-Field Unit (IFU) and Multi- Object Spectrograph (MOS) capabilities at resolutions in the range R=6,000-20,000. The MEGARA focal plane subsystems are located at one of the GTC focal stations, while the MEGARA refractive VPH based spectrograph is located at one of the Nasmyth platforms. The fiber bundles conduct the light from the focal plane subsystems to the pseudo-slits at the entrance of the spectrograph. The project is an initiative led by Universidad Complutense de Madrid (Spain) in collaboration with INAOE (Mexico), IAA-CSIC (Spain) and Universidad Politécnica de Madrid (Spain) and is developed under contract with GRANTECAN. The project is carried out by a multidisciplinary and geographically distributed team, which includes the in-kind contributions of the project partners and personnel from several private companies. The MEGARA system-engineering plan has been tailored to the project and is being applied to ensure the technical control of the project in order to finally meet the science high-level requirements and GTC constrains.

WIYN bench upgrade: a revitalized spectrograph

NASA Astrophysics Data System (ADS)

Bershady, M.; Barden, S.; Blanche, P.-A.; Blanco, D.; Corson, C.; Crawford, S.; Glaspey, J.; Habraken, S.; Jacoby, G.; Keyes, J.; Knezek, P.; Lemaire, P.; Liang, M.; McDougall, E.; Poczulp, G.; Sawyer, D.; Westfall, K.; Willmarth, D.

2008-07-01

We describe the redesign and upgrade of the versatile fiber-fed Bench Spectrograph on the WIYN 3.5m telescope. The spectrograph is fed by either the Hydra multi-object positioner or integral-field units (IFUs) at two other ports, and can be configured with an adjustable camera-collimator angle to use low-order and echelle gratings. The upgrade, including a new collimator, charge-coupled device (CCD) and modern controller, and volume-phase holographic gratings (VPHG), has high performance-to-cost ratio by combining new technology with a system reconfiguration that optimizes throughput while utilizing as much of the existing instrument as possible. A faster, all-refractive collimator enhances throughput by 60%, nearly eliminates the slit-function due to vignetting, and improves image quality to maintain instrumental resolution. Two VPH gratings deliver twice the diffraction efficiency of existing surface-relief gratings: A 740 l/mm grating (float-glass and post-polished) used in 1st and 2nd-order, and a large 3300 l/mm grating (spectral resolution comparable to the R2 echelle). The combination of collimator, high-quantum efficiency (QE) CCD, and VPH gratings yields throughput gain-factors of up to 3.5.

First results of tests on the WEAVE fibres

NASA Astrophysics Data System (ADS)

Sayède, Frédéric; Younes, Youssef; Fasola, Gilles; Dorent, Stéphane; Abrams, Don Carlos; Aguerri, J. Alphonso L.; Bonifacio, Piercarlo; Carrasco, Esperanza; Dalton, Gavin; Dee, Kevin; Laporte, Philippe; Lewis, Ian; Lhome, Emilie; Middleton, Kevin; Pragt, Johan H.; Rey, Juerg; Stuik, Remko; Trager, Scott C.; Vallenari, Antonella

2016-07-01

WEAVE is a new wide-field spectroscopy facility proposed for the prime focus of the 4.2m William Herschel Telescope. The facility comprises a new 2-degree field of view prime focus corrector with a 1000-multiplex fibre positioner, a small number of individually deployable integral field units, and a large single integral field unit. The IFUs (Integral Field Units) and the MOS (Multi Object Spectrograph) fibres can be used to feed a dual-beam spectrograph that will provide full coverage of the majority of the visible spectrum in a single exposure at a spectral resolution of 5000 or modest wavelength coverage in both arms at a resolution 20000. The instrument is expected to be on-sky by the first quarter of 2018 to provide spectroscopic sampling of the fainter end of the Gaia astrometric catalogue, chemical labeling of stars to V 17, and dedicated follow up of substantial numbers of sources from the medium deep LOFAR surveys. After a brief description of the Fibre System, we describe the fibre test bench, its calibration, and some test results. We have to verify 1920 fibres from the MOS bundles and 740 fibres from the mini-IFU bundles with the test bench. In particular, we present the Focal Ratio Degradation of a cable.

CAB Contribution to HARMONI: The first light spectrograph of the E-ELT

NASA Astrophysics Data System (ADS)

Piqueras López, J.; Arribas, S.; Calcines, A.

2017-03-01

HARMONI (High Angular Resolution Monolithic Optical and Near-infrared Integral field spectrograph) is a visible and near-infrared (0.47 to 2.45 μm) integral field spectrograph selected as a first-light instrument for the European Extremely Large Telescope (E-ELT). With four spatial scales (60, 20, 10 and 4 mas) and a wide range of spectral resolving powers (R=3500, 7500, 20000), HARMONI will allow scientists to address many of the E-ELT science cases. The HARMONI Consortium is led by the University of Oxford, and is also formed by the UK Astronomy Technology Centre (UKATC, Edinburgh, UK), Centre de Recherche Astrophysique de Lyon (CRAL), Laboratoire d'Astrophysique de Marseille (LAM), Instituto de Astrofísica de Canarias (IAC, Spain) and the Centro de Astrobiología (CAB INTA-CSIC, Spain). We summarize here the current status of the project, and describe the participation of CAB to design and manufacture two of the instrument sub-systems: the calibration unit and the secondary guiding module. The calibration unit will simulate the optical output of the telescope, and provide the functionality needed to illuminate the focal plane in such a way that the following type of data can be obtained: data aimed at removing the instrumental signature from the raw data and to convert the data into a data product that uses physical units, data required for monitoring the status of the instrument, and data required for calibrating the secondary guiding subsystem. The secondary guiding subsystem basic requirement is to provide knowledge (relative or absolute) of the location of the science focal plane on timescales of a few seconds and longer (up to months), with an accuracy of 2mas or 0.1x the input FWHM (at H/K bands), whichever is greater. The subsystem should achieve this level performance for different observation modes, e.g. no- AO, GLAO and LTAO modes.

VizieR Online Data Catalog: Photometry of the transient event iPTF16fnl (Blagorodnova+, 2017)

NASA Astrophysics Data System (ADS)

Blagorodnova, N.; Gezari, S.; Hung, T.; Kulkarni, S. R.; Cenko, S. B.; Pasham, D. R.; Yan, L.; Arcavi, I.; Ben-Ami, S.; Bue, B. D.; Cantwell, T.; Cao, Y.; Castro-Tirado, A. J.; Fender, R.; Fremling, C.; Gal-Yam, A.; Ho, A. Y. Q.; Horesh, A.; Hosseinzadeh, G.; Kasliwal, M. M.; Kong, A. K. H.; Laher, R. R.; Leloudas, G.; Lunnan, R.; Masci, F. J.; Mooley, K.; Neill, J. D.; Nugent, P.; Powell, M.; Valeev, A. F.; Vreeswijk, P. M.; Walters, R.; Wozniak, P.

2018-03-01

On the night after discovery (2016 August 29th), we observed the source with the FLOYDS spectrograph on the Las Cumbres Observatory (LCO) 2m telescope and the Spectral Energy Distribution Machine (SEDM) on the Palomar 60 inch (P60) telescope. The SEDM is a ultra-low resolution (R~100) integral-field-unit (IFU) spectrograph. Following spectroscopic identification of iPTF16fnl as a tidal disruption event (TDE) candidate, the source was monitored at Palomar and by the Ultraviolet and Optical Telescope (UVOT) on board the Swift observatory. The UVOT observations were taken in UVW2, UVM2, UVW1, U, B, and V. At Palomar, photometry in the g and Mould-R bands were obtained with the iPTF mosaic wide-field camera on the Palomar 48-inch telescope (P48). Table 3 reports the measured Swift aperture photometry magnitudes and the difference-imaging photometry for the Palomar data spanning 2016 Aug to 2016 Dec. Radio follow-up observations of iPTF16fnl were taken with the Jansky Very Large Array (VLA; PI A. Horesh), the Arcminute Microkelvin Imager (AMI; PI K. Mooley) and the James Clerk Maxwell Telescope and the Submillimetre Common-User Bolometer Array 2 (JCMT/SCUBA-2; PI A. K. H. Kong). We also observed the location of iPTF16fnl with the X-Ray Telescope (XRT) on board the Swift satellite beginning at 19:32 UT on 30 August 2016. Regular monitoring of the field in photon counting mode continued over the course of the next four months (PIs T. Holoien and B. Cenko). (1 data file).

New Horizons Upper Limits on O{sub 2} in Pluto’s Present Day Atmosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kammer, J. A.; Gladstone, G. R.; Stern, S. A.

The surprising discovery by the Rosetta spacecraft of molecular oxygen (O{sub 2}) in the coma of comet 67P/Churyumov–Gerasimenko challenged our understanding of the inventory of this volatile species on and inside bodies from the Kuiper Belt. That discovery motivated our search for oxygen in the atmosphere of Kuiper Belt planet Pluto, because O{sub 2} is volatile even at Pluto’s surface temperatures. During the New Horizons flyby of Pluto in 2015 July, the spacecraft probed the composition of Pluto’s atmosphere using a variety of observations, including an ultraviolet solar occultation observed by the Alice UV spectrograph. As described in these reports, absorptionmore » by molecular species in Pluto’s atmosphere yielded detections of N{sub 2}, as well as hydrocarbon species such as CH{sub 4}, C{sub 2}H{sub 2}, C{sub 2}H{sub 4}, and C{sub 2}H{sub 6}. Our work here further examines this data to search for UV absorption from molecular oxygen (O{sub 2}), which has a significant cross-section in the Alice spectrograph bandpass. We find no evidence for O{sub 2} absorption and place an upper limit on the total amount of O{sub 2} in Pluto’s atmosphere as a function of tangent height up to 700 km. In most of the atmosphere, this upper limit in line-of-sight abundance units is ∼3 × 10{sup 15} cm{sup −2}, which, depending on tangent height, corresponds to a mixing ratio of 10{sup −6} to 10{sup −4}, far lower than in comet 67P/CG.« less

Characterization and serology of the matrix protein from a nuclear-polyhedrosis virus of Trichoplusia ni before and after degradation by an endogenous proteinase.

PubMed

Eppstein, D A; Thoma, J A

1977-11-01

The intact matrix protein from a nuclear-polyhedrosis virus of the cabbage looper (Trichoplusia ni), isolated after inhibition of an endogenous serine-type proteinase, was further purified by molecular-sieve chromatography. The matrix protein was associated with carbohydrate moieties, and the carbohydrate content was determined for the two major peptides isolated after proteolysis by the endogenous proteinase. The association-dissociation interactions of the intact and proteinase-hydrolysed monomer units were characterized at high and low pH. At pH1.9, proteinase-degraded matrix protein dissociated into two different peptide fractions, FI and FII. Fraction FII, a single peptide of 9400 daltons, comprised one-third of the monomer unit of 28 000 daltons. At pH9.5, the degraded peptides were tightly associated in units equivalent to the intact monomer. These monomer equivalents associated to form a series of interconverting aggregates. The predominant aggregate sedimented at 11S and had a mol.wt greater than or equal to 200 000. Two non-cross-reacting antigens were present in the aggregate mixture. The presence of these two antigens does not reflect the presence of two different matrix proteins; rather, the expression of the antigens correlates with the degree of aggregation of the matrix protein.

Update: Influenza Activity - United States and Worldwide, May 21-September 23, 2017.

PubMed

Blanton, Lenee; Wentworth, David E; Alabi, Noreen; Azziz-Baumgartner, Eduardo; Barnes, John; Brammer, Lynnette; Burns, Erin; Davis, C Todd; Dugan, Vivien G; Fry, Alicia M; Garten, Rebecca; Grohskopf, Lisa A; Gubareva, Larisa; Kniss, Krista; Lindstrom, Stephen; Mustaquim, Desiree; Olsen, Sonja J; Roguski, Katherine; Taylor, Calli; Trock, Susan; Xu, Xiyan; Katz, Jacqueline; Jernigan, Daniel

2017-10-06

During May 21-September 23, 2017,* the United States experienced low-level seasonal influenza virus activity; however, beginning in early September, CDC received reports of a small number of localized influenza outbreaks caused by influenza A(H3N2) viruses. In addition to influenza A(H3N2) viruses, influenza A(H1N1)pdm09 and influenza B viruses were detected during May-September worldwide and in the United States. Influenza B viruses predominated in the United States from late May through late June, and influenza A viruses predominated beginning in early July. The majority of the influenza viruses collected and received from the United States and other countries during that time have been characterized genetically or antigenically as being similar to the 2017 Southern Hemisphere and 2017-18 Northern Hemisphere cell-grown vaccine reference viruses; however, a smaller proportion of the circulating A(H3N2) viruses showed similarity to the egg-grown A(H3N2) vaccine reference virus which represents the A(H3N2) viruses used for the majority of vaccine production in the United States. Also, during May 21-September 23, 2017, CDC confirmed a total of 33 influenza variant virus † infections; two were influenza A(H1N2) variant (H1N2v) viruses (Ohio) and 31 were influenza A(H3N2) variant (H3N2v) viruses (Delaware [1], Maryland [13], North Dakota [1], Pennsylvania [1], and Ohio [15]). An additional 18 specimens from Maryland have tested presumptive positive for H3v and further analysis is being conducted at CDC.

Polyclonal antibodies against a structure mimicking the covalent linkage unit between picornavirus RNA and VPg: an immunochemical study.

PubMed

Ivanova, O A; Venyaminova, A G; Repkova, M N; Drygin, Yu F

2005-09-01

We propose that therapy of patients with anticancer drugs that poison DNA topoisomerases induces formation of covalent complexes of cellular RNAs and DNA topoisomerases. The appearance of these complexes can be detected with antibodies against a synthetic hapten mimicking the covalent linkage unit Tyr-pU(p) of picornavirus RNA and VPg. We synthesized hapten [N(Ac),CO(NH2)]Tyr-(5 P --> O)Up-O-(CH2)6NH2, conjugated it with BSA, and immunized rabbits with the antigen obtained. The raised polyclonal antibodies were purified by successive affinity chromatography on BSA-Sepharose and hapten-Sepharose columns. Target antibodies recognized hapten and encephalomyocarditis virus RNA-VPg complex specifically as found using the dot-immunogold method. We believe that these antibodies might be useful to study mechanism of picorna and similar virus RNA synthesis. The discovery and qualitative determination of the cellular RNA-DNA topoisomerases covalent complexes with these antibodies might be useful to monitor therapy efficacy by drugs "freezing" dead-end complexes of DNA topoisomerases and nucleic acids and to understand the mechanism of DNA topoisomerase poisoning in situ.

An overview of instrumentation for the Large Binocular Telescope

NASA Astrophysics Data System (ADS)

Wagner, R. Mark

2006-06-01

An overview of instrumentation for the Large Binocular Telescope is presented. Optical instrumentation includes the Large Binocular Camera (LBC), a pair of wide-field (27' × 27') mosaic CCD imagers at the prime focus, and the Multi-Object Double Spectrograph (MODS), a pair of dual-beam blue-red optimized long-slit spectrographs mounted at the straight-through F/15 Gregorian focus incorporating multiple slit masks for multi-object spectroscopy over a 6' field and spectral resolutions of up to 8000. Infrared instrumentation includes the LBT Near-IR Spectroscopic Utility with Camera and Integral Field Unit for Extragalactic Research (LUCIFER), a modular near-infrared (0.9-2.5 μm) imager and spectrograph pair mounted at a bent interior focal station and designed for seeing-limited (FOV: 4' × 4') imaging, long-slit spectroscopy, and multi-object spectroscopy utilizing cooled slit masks and diffraction limited (FOV: 0'.5 × 0'.5) imaging and long-slit spectroscopy. Strategic instruments under development for the remaining two combined focal stations include an interferometric cryogenic beam combiner with near-infrared and thermal-infrared instruments for Fizeau imaging and nulling interferometry (LBTI) and an optical bench near-infrared beam combiner utilizing multi-conjugate adaptive optics for high angular resolution and sensitivity (LINC-NIRVANA). In addition, a fiber-fed bench spectrograph (PEPSI) capable of ultra high resolution spectroscopy and spectropolarimetry (R = 40,000-300,000) will be available as a principal investigator instrument. The availability of all these instruments mounted simultaneously on the LBT permits unique science, flexible scheduling, and improved operational support.

An overview of instrumentation for the Large Binocular Telescope

NASA Astrophysics Data System (ADS)

Wagner, R. Mark

2004-09-01

An overview of instrumentation for the Large Binocular Telescope is presented. Optical instrumentation includes the Large Binocular Camera (LBC), a pair of wide-field (27'x 27') UB/VRI optimized mosaic CCD imagers at the prime focus, and the Multi-Object Double Spectrograph (MODS), a pair of dual-beam blue-red optimized long-slit spectrographs mounted at the straight-through F/15 Gregorian focus incorporating multiple slit masks for multi-object spectroscopy over a 6\\arcmin\\ field and spectral resolutions of up to 8000. Infrared instrumentation includes the LBT Near-IR Spectroscopic Utility with Camera and Integral Field Unit for Extragalactic Research (LUCIFER), a modular near-infrared (0.9-2.5 μm) imager and spectrograph pair mounted at a bent interior focal station and designed for seeing-limited (FOV: 4'x 4') imaging, long-slit spectroscopy, and multi-object spectroscopy utilizing cooled slit masks and diffraction limited (FOV: 0'.5 x 0'.5) imaging and long-slit spectroscopy. Strategic instruments under development for the remaining two combined focal stations include an interferometric cryogenic beam combiner with near-infrared and thermal-infrared instruments for Fizeau imaging and nulling interferometry (LBTI) and an optical bench beam combiner with visible and near-infrared imagers utilizing multi-conjugate adaptive optics for high angular resolution and sensitivity (LINC/NIRVANA). In addition, a fiber-fed bench spectrograph (PEPSI) capable of ultra high resolution spectroscopy and spectropolarimetry (R = 40,000-300,000) will be available as a principal investigator instrument. The availability of all these instruments mounted simultaneously on the LBT permits unique science, flexible scheduling, and improved operational support.

An overview of instrumentation for the Large Binocular Telescope

NASA Astrophysics Data System (ADS)

Wagner, R. Mark

2008-07-01

An overview of instrumentation for the Large Binocular Telescope is presented. Optical instrumentation includes the Large Binocular Camera (LBC), a pair of wide-field (27' × 27') mosaic CCD imagers at the prime focus, and the Multi-Object Double Spectrograph (MODS), a pair of dual-beam blue-red optimized long-slit spectrographs mounted at the straight-through F/15 Gregorian focus incorporating multiple slit masks for multi-object spectroscopy over a 6 field and spectral resolutions of up to 8000. Infrared instrumentation includes the LBT Near-IR Spectroscopic Utility with Camera and Integral Field Unit for Extragalactic Research (LUCIFER), a modular near-infrared (0.9-2.5 μm) imager and spectrograph pair mounted at a bent interior focal station and designed for seeing-limited (FOV: 4' × 4') imaging, long-slit spectroscopy, and multi-object spectroscopy utilizing cooled slit masks and diffraction limited (FOV: 0.5' × 0.5') imaging and long-slit spectroscopy. Strategic instruments under development for the remaining two combined focal stations include an interferometric cryogenic beam combiner with near-infrared and thermal-infrared instruments for Fizeau imaging and nulling interferometry (LBTI) and an optical bench near-infrared beam combiner utilizing multi-conjugate adaptive optics for high angular resolution and sensitivity (LINC-NIRVANA). In addition, a fiber-fed bench spectrograph (PEPSI) capable of ultra high resolution spectroscopy and spectropolarimetry (R = 40,000-300,000) will be available as a principal investigator instrument. The availability of all these instruments mounted simultaneously on the LBT permits unique science, flexible scheduling, and improved operational support.

RAPID CONCENTRATION OF VIRUSES FROM WATER - PHASE I

EPA Science Inventory

In the United States, several high profile outbreaks of waterborne illness during the past 15 years have highlighted the need for solutions to drinking water contamination.  Several recent studies suggest that approximately 20 percent of the surface and ground source waters...

IRMS: Infrared Multi-Slit Spectrograph for TMT

NASA Astrophysics Data System (ADS)

U, Vivian; Mobasher, B.

2014-07-01

As one of the first-light instruments on the TMT, the IRMS is a near-infrared multi-slit spectrograph and imager designed to sample near the diffraction limit with the help of adaptive optics. Fed by the Narrow-Field Infrared Adaptive Optics Systems (NFIRAOS) on the TMT, the IRMS will provide near-infrared imaging and multi-object spectroscopy at Y, J, H, and K bands (0.9-2.5 microns) with moderate spectral resolution. With a field of view of ~2 arcmin on a side, it has a multiplex capability of up to 46 slits using a slit mask system on a cryogenic configurable slit unit. Here we present a preliminary version of the exposure time calculator for sensitivity comparison with Keck/MOSFIRE. Selected science cases are highlighted to demonstrate the need for IRMS in this upcoming thirty-meter class telescope era.

Equid Herpesvirus Type 1 Activates Platelets

PubMed Central

Stokol, Tracy; Yeo, Wee Ming; Burnett, Deborah; DeAngelis, Nicole; Huang, Teng; Osterrieder, Nikolaus; Catalfamo, James

2015-01-01

Equid herpesvirus type 1 (EHV-1) causes outbreaks of abortion and neurological disease in horses. One of the main causes of these clinical syndromes is thrombosis in placental and spinal cord vessels, however the mechanism for thrombus formation is unknown. Platelets form part of the thrombus and amplify and propagate thrombin generation. Here, we tested the hypothesis that EHV-1 activates platelets. We found that two EHV-1 strains, RacL11 and Ab4 at 0.5 or higher plaque forming unit/cell, activate platelets within 10 minutes, causing α-granule secretion (surface P-selectin expression) and platelet microvesiculation (increased small events double positive for CD41 and Annexin V). Microvesiculation was more pronounced with the RacL11 strain. Virus-induced P-selectin expression required plasma and 1.0 mM exogenous calcium. P-selectin expression was abolished and microvesiculation was significantly reduced in factor VII- or X-deficient human plasma. Both P-selectin expression and microvesiculation were re-established in factor VII-deficient human plasma with added purified human factor VIIa (1 nM). A glycoprotein C-deficient mutant of the Ab4 strain activated platelets as effectively as non-mutated Ab4. P-selectin expression was abolished and microvesiculation was significantly reduced by preincubation of virus with a goat polyclonal anti-rabbit tissue factor antibody. Infectious virus could be retrieved from washed EHV-1-exposed platelets, suggesting a direct platelet-virus interaction. Our results indicate that EHV-1 activates equine platelets and that α-granule secretion is a consequence of virus-associated tissue factor triggering factor X activation and thrombin generation. Microvesiculation was only partly tissue factor and thrombin-dependent, suggesting the virus causes microvesiculation through other mechanisms, potentially through direct binding. These findings suggest that EHV-1-induced platelet activation could contribute to the thrombosis that occurs in clinically infected horses and provides a new mechanism by which viruses activate hemostasis. PMID:25905776

Hubble Probes Comet 103P/Hartley 2 in Preparation for DIXI flyby

NASA Image and Video Library

2017-12-08

NASA image release October 5, 2010 Hubble Space Telescope observations of comet 103P/Hartley 2, taken on September 25, are helping in the planning for a November 4 flyby of the comet by NASA's Deep Impact eXtended Investigation (DIXI) spacecraft. Analysis of the new Hubble data shows that the nucleus has a diameter of approximately 0.93 miles (1.5 km), which is consistent with previous estimates. The comet is in a highly active state, as it approaches the Sun. The Hubble data show that the coma is remarkably uniform, with no evidence for the types of outgassing jets seen from most "Jupiter Family" comets, of which Hartley 2 is a member. Jets can be produced when the dust emanates from a few specific icy regions, while most of the surface is covered with relatively inert, meteoritic-like material. In stark contrast, the activity from Hartley 2's nucleus appears to be more uniformly distributed over its entire surface, perhaps indicating a relatively "young" surface that hasn't yet been crusted over. Hubble's spectrographs - the Cosmic Origins Spectrograph (COS) and the Space Telescope Imaging Spectrograph (STIS) -- are expected to provide unique information about the comet's chemical composition that might not be obtainable any other way, including measurements by DIXI. The Hubble team is specifically searching for emissions from carbon monoxide (CO) and diatomic sulfur (S2). These molecules have been seen in other comets but have not yet been detected in 103P/Hartley 2. 103P/Hartley has an orbital period of 6.46 years. It was discovered by Malcolm Hartley in 1986 at the Schmidt Telescope Unit in Siding Spring, Australia. The comet will pass within 11 million miles of Earth (about 45 times the distance to the Moon) on October 20. During that time the comet may be visible to the naked eye as a 5th magnitude "fuzzy star" in the constellation Auriga. Credit: NASA, ESA, and H. Weaver (The Johns Hopkins University/Applied Physics Lab) The Hubble Space Telescope is a project of international cooperation between NASA and the European Space Agency. NASA's Goddard Space Flight Center manages the telescope. The Space Telescope Science Institute (STScI) conducts Hubble science operations. STScI is operated for NASA by the Association of Universities for Research in Astronomy, Inc., in Washington, D.C. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Join us on Facebook

VizieR Online Data Catalog: Double-peaked narrow lines in AGN. II. z<0.1 (Nevin+, 2016)

NASA Astrophysics Data System (ADS)

Nevin, R.; Comerford, J.; Muller-Sanchez, F.; Barrows, R.; Cooper, M.

2017-02-01

To determine the nature of 71 Type 2 AGNs with double-peaked [OIII] emission lines in SDSS that are at z<0.1 and further characterize their properties, we observe them using two complementary follow-up methods: optical long-slit spectroscopy and Jansky Very Large Array (VLA) radio observations. We use various spectrographs with similar pixel scales (Lick Kast Spectrograph; Palomar Double Spectrograph; MMT Blue Channel Spectrograph; APO Dual Imaging Spectrograph and Keck DEep Imaging Multi-Object Spectrograph. We use a 1200 lines/mm grating for all spectrographs; see table 1. In future work, we will combine our long-slit observations with the VLA data for the full sample of 71 galaxies (O. Muller-Sanchez+ 2016, in preparation). (4 data files).

SpecOp: Optimal Extraction Software for Integral Field Unit Spectrographs

NASA Astrophysics Data System (ADS)

McCarron, Adam; Ciardullo, Robin; Eracleous, Michael

2018-01-01

The Hobby-Eberly Telescope’s new low resolution integral field spectrographs, LRS2-B and LRS2-R, each cover a 12”x6” area on the sky with 280 fibers and generate spectra with resolutions between R=1100 and R=1900. To extract 1-D spectra from the instrument’s 3D data cubes, a program is needed that is flexible enough to work for a wide variety of targets, including continuum point sources, emission line sources, and compact sources embedded in complex backgrounds. We therefore introduce SpecOp, a user-friendly python program for optimally extracting spectra from integral-field unit spectrographs. As input, SpecOp takes a sky-subtracted data cube consisting of images at each wavelength increment set by the instrument’s spectral resolution, and an error file for each count measurement. All of these files are generated by the current LRS2 reduction pipeline. The program then collapses the cube in the image plane using the optimal extraction algorithm detailed by Keith Horne (1986). The various user-selected options include the fraction of the total signal enclosed in a contour-defined region, the wavelength range to analyze, and the precision of the spatial profile calculation. SpecOp can output the weighted counts and errors at each wavelength in various table formats using python’s astropy package. We outline the algorithm used for extraction and explain how the software can be used to easily obtain high-quality 1-D spectra. We demonstrate the utility of the program by applying it to spectra of a variety of quasars and AGNs. In some of these targets, we extract the spectrum of a nuclear point source that is superposed on a spatially extended galaxy.

MuSICa at GRIS: a prototype image slicer for EST at GREGOR

NASA Astrophysics Data System (ADS)

Calcines, A.; Collados, M.; López, R. L.

2013-05-01

This communication presents a prototype image slicer for the 4-m European Solar Telescope (EST) designed for the spectrograph of the 1.5-m GREGOR solar telescope (GRIS). The design of this integral field unit has been called MuSICa (Multi-Slit Image slicer based on collimator-Camera). It is a telecentric system developed specifically for the integral field, high resolution spectrograph of EST and presents multi-slit capability, reorganizing a bidimensional field of view of 80 arcsec^{2} into 8 slits, each one of them with 200 arcsec length × 0.05 arcsec width. It minimizes the number of optical components needed to fulfil this multi-slit capability, three arrays of mirrors: slicer, collimator and camera mirror arrays (the first one flat and the other two spherical). The symmetry of the layout makes it possible to overlap the pupil images associated to each part of the sliced entrance field of view. A mask with only one circular aperture is placed at the pupil position. This symmetric characteristic offers some advantages: facilitates the manufacturing process, the alignment and reduces the costs. In addition, it is compatible with two modes of operation: spectroscopic and spectro-polarimetric, offering a great versatility. The optical quality of the system is diffraction-limited. The prototype will improve the performances of GRIS at GREGOR and is part of the feasibility study of the integral field unit for the spectrographs of EST. Although MuSICa has been designed as a solar image slicer, its concept can also be applied to night-time astronomical instruments (Collados et al. 2010, Proc. SPIE, Vol. 7733, 77330H; Collados et al. 2012, AN, 333, 901; Calcines et al. 2010, Proc. SPIE, Vol. 7735, 77351X)

Multimodal Counseling Interventions: Effect on Human Papilloma Virus Vaccination Acceptance

PubMed Central

Salisbury, Helen; Bay, Curtis

2017-01-01

Human papilloma virus (HPV) vaccine was developed to reduce HPV-attributable cancers, external genital warts (EGW), and recurrent respiratory papillomatosis. Adolescent HPV vaccination series completion rates are less than 40% in the United States of America, but up to 80% in Australia and the United Kingdom. Population-based herd immunity requires 80% or greater vaccination series completion rates. Pro-vaccination counseling facilitates increased vaccination rates. Multimodal counseling interventions may increase HPV vaccination series non-completers’ HPV-attributable disease knowledge and HPV-attributable disease prophylaxis (vaccination) acceptance over a brief 14-sentence counseling intervention. An online, 4-group, randomized controlled trial, with 260 or more participants per group, found that parents were more likely to accept HPV vaccination offers for their children than were childless young adults for themselves (68.2% and 52.9%). A combined audiovisual and patient health education handout (PHEH) intervention raised knowledge of HPV vaccination purpose, p = 0.02, and HPV vaccination acceptance for seven items, p < 0.001 to p = 0.023. The audiovisual intervention increased HPV vaccination acceptance for five items, p < 0.001 to p = 0.006. That HPV causes EGW, and that HPV vaccination prevents HPV-attributable diseases were better conveyed by the combined audiovisual and PHEH than the control 14-sentence counseling intervention alone. PMID:29113137

Multimodal Counseling Interventions: Effect on Human Papilloma Virus Vaccination Acceptance.

PubMed

Nwanodi, Oroma; Salisbury, Helen; Bay, Curtis

2017-11-06

Human papilloma virus (HPV) vaccine was developed to reduce HPV-attributable cancers, external genital warts (EGW), and recurrent respiratory papillomatosis. Adolescent HPV vaccination series completion rates are less than 40% in the United States of America, but up to 80% in Australia and the United Kingdom. Population-based herd immunity requires 80% or greater vaccination series completion rates. Pro-vaccination counseling facilitates increased vaccination rates. Multimodal counseling interventions may increase HPV vaccination series non-completers' HPV-attributable disease knowledge and HPV-attributable disease prophylaxis (vaccination) acceptance over a brief 14-sentence counseling intervention. An online, 4-group, randomized controlled trial, with 260 or more participants per group, found that parents were more likely to accept HPV vaccination offers for their children than were childless young adults for themselves (68.2% and 52.9%). A combined audiovisual and patient health education handout (PHEH) intervention raised knowledge of HPV vaccination purpose, p = 0.02, and HPV vaccination acceptance for seven items, p < 0.001 to p = 0.023. The audiovisual intervention increased HPV vaccination acceptance for five items, p < 0.001 to p = 0.006. That HPV causes EGW, and that HPV vaccination prevents HPV-attributable diseases were better conveyed by the combined audiovisual and PHEH than the control 14-sentence counseling intervention alone.

Ecologic Factors Associated with West Nile Virus Transmission, Northeastern United States

PubMed Central

Brown, Heidi E.; Childs, James E.; Diuk-Wasser, Maria A.

2008-01-01

Since 1999, West Nile virus (WNV) disease has affected the northeastern United States. To describe the spatial epidemiology and identify risk factors for disease incidence, we analyzed 8 years (1999–2006) of county-based human WNV disease surveillance data. Among the 56.6 million residents in 8 northeastern states sharing primary enzootic vectors, we found 977 cases. We controlled for population density and potential bias from surveillance and spatial proximity. Analyses demonstrated significant spatial spreading from 1999 through 2004 (p<0.01, r2 = 0.16). A significant trend was apparent among increasingly urban counties; county quartiles with the least (<38%) forest cover had 4.4-fold greater odds (95% confidence interval [CI] 1.4–13.2, p = 0.01) of having above-median disease incidence (>0.75 cases/100,000 residents) than counties with the most (>70%) forest cover. These results quantify urbanization as a risk factor for WNV disease incidence and are consistent with knowledge of vector species in this area. PMID:18826816

Evaluation of virus reduction efficiency in wastewater treatment unit processes as a credit value in the multiple-barrier system for wastewater reclamation and reuse.

PubMed

Ito, Toshihiro; Kato, Tsuyoshi; Hasegawa, Makoto; Katayama, Hiroyuki; Ishii, Satoshi; Okabe, Satoshi; Sano, Daisuke

2016-12-01

The virus reduction efficiency of each unit process is commonly determined based on the ratio of virus concentration in influent to that in effluent of a unit, but the virus concentration in wastewater has often fallen below the analytical quantification limit, which does not allow us to calculate the concentration ratio at each sampling event. In this study, left-censored datasets of norovirus (genogroup I and II), and adenovirus were used to calculate the virus reduction efficiency in unit processes of secondary biological treatment and chlorine disinfection. Virus concentration in influent, effluent from the secondary treatment, and chlorine-disinfected effluent of four municipal wastewater treatment plants were analyzed by a quantitative polymerase chain reaction (PCR) approach, and the probabilistic distributions of log reduction (LR) were estimated by a Bayesian estimation algorithm. The mean values of LR in the secondary treatment units ranged from 0.9 and 2.2, whereas those in the free chlorine disinfection units were from -0.1 and 0.5. The LR value in the secondary treatment was virus type and unit process dependent, which raised the importance for accumulating the data of virus LR values applicable to the multiple-barrier system, which is a global concept of microbial risk management in wastewater reclamation and reuse.

KSC-2009-3074

NASA Image and Video Library

2009-05-11

CAPE CANAVERAL, Fla. – In the Firing Room at NASA's Kennedy Space Center in Florida, Steven Hoyle, left, and Russ Brucker, center, receive a VIP award for their efforts associated with the STS-125 mission and NASA's Hubble Space Telescope. Hoyle is the payload test operations manager with NASA's Goddard Space Flight Center; Brucker is the Atlantis payload project manager with United Space Alliance. A crew of seven launched today on space shuttle Atlantis to service Hubble. Liftoff was on time at 2:01 p.m. EDT. Atlantis' 11-day flight will include five spacewalks to refurbish and upgrade the telescope with state-of-the-art science instruments that will expand Hubble's capabilities and extend its operational lifespan through at least 2014. The payload includes a Wide Field Camera 3, fine guidance sensor and the Cosmic Origins Spectrograph. Photo credit: NASA/Kim Shiflett

A giant planet around a metal-poor star of extragalactic origin.

PubMed

Setiawan, Johny; Klement, Rainer J; Henning, Thomas; Rix, Hans-Walter; Rochau, Boyke; Rodmann, Jens; Schulze-Hartung, Tim

2010-12-17

Stars in their late stage of evolution, such as horizontal branch stars, are still largely unexplored for planets. We detected a planetary companion around HIP 13044, a very metal-poor star on the red horizontal branch, on the basis of radial velocity observations with a high-resolution spectrograph at the 2.2-meter Max-Planck Gesellschaft-European Southern Observatory telescope. The star's periodic radial velocity variation of P = 16.2 days caused by the planet can be distinguished from the periods of the stellar activity indicators. The minimum mass of the planet is 1.25 times the mass of Jupiter and its orbital semimajor axis is 0.116 astronomical units. Because HIP 13044 belongs to a group of stars that have been accreted from a disrupted satellite galaxy of the Milky Way, the planet most likely has an extragalactic origin.

Influenza-Associated Parotitis During the 2014-2015 Influenza Season in the United States.

PubMed

Rolfes, Melissa A; Millman, Alexander J; Talley, Pamela; Elbadawi, Lina I; Kramer, Natalie A; Barnes, John R; Blanton, Lenee; Davis, Jeffrey P; Cole, Stefanie; Dreisig, John J; Garten, Rebecca; Haupt, Thomas; Jackson, Mary Anne; Kocharian, Anna; Leifer, Daniel; Lynfield, Ruth; Martin, Karen; McHugh, Lisa; Robinson, Sara; Turabelidze, George; Webber, Lori A; Pearce Weinberg, Meghan; Wentworth, David E; Finelli, Lyn; Jhung, Michael A

2018-03-30

During the 2014-2015 influenza season in the United States, 256 cases of influenza-associated parotitis were reported from 27 states. We conducted a case-control study and laboratory investigation to further describe this rare clinical manifestation of influenza. During February 2015-April 2015, we interviewed 50 cases (with parotitis) and 124 ill controls (without parotitis) with laboratory-confirmed influenza; participants resided in 11 states and were matched by age, state, hospital admission status, and specimen collection date. Influenza viruses were characterized using real-time polymerase chain reaction and next-generation sequencing. We compared cases and controls using conditional logistic regression. Specimens from additional reported cases were also analyzed. Cases, 73% of whom were aged <20 years, experienced painful (86%), unilateral (68%) parotitis a median of 4 (range, 0-16) days after onset of systemic or respiratory symptoms. Cases were more likely than controls to be male (76% vs 51%; P = .005). We detected influenza A(H3N2) viruses, genetic group 3C.2a, in 100% (32/32) of case and 92% (105/108) of control specimens sequenced (P = .22). Influenza B and A(H3N2) 3C.3 and 3C.3b genetic group virus infections were detected in specimens from additional cases. Influenza-associated parotitis, as reported here and in prior sporadic case reports, seems to occur primarily with influenza A(H3N2) virus infection. Because of the different clinical and infection control considerations for mumps and influenza virus infections, we recommend clinicians consider influenza in the differential diagnoses among patients with acute parotitis during the influenza season.

Age as an independent risk factor for intensive care unit admission or death due to 2009 pandemic influenza A (H1N1) virus infection.

PubMed

Nickel, Katelin B; Marsden-Haug, Nicola; Lofy, Kathryn H; Turnberg, Wayne L; Rietberg, Krista; Lloyd, Jennifer K; Marfin, Anthony A

2011-01-01

This study evaluated risk factors for intensive care unit (ICU) admission or death among people hospitalized with 2009 pandemic influenza A (pH1N1) virus infection. We based analyses on data collected in Washington State from April 27 to September 18, 2009, on deceased or hospitalized people with laboratory-confirmed pH1N1 infection reported by health-care providers and hospitals as part of enhanced public health surveillance. We used bivariate analyses and multivariable logistic regression to identify risk factors associated with ICU admission or death due to pH1N1. We identified 123 patients admitted to the hospital but not an ICU and 61 patients who were admitted to an ICU or died. Independent of high-risk medical conditions, both older age and delayed time to hospital admission were identified as risk factors for ICU admission or death due to pH1N1. Specifically, the odds of ICU admission or death were 4.44 times greater among adults aged 18-49 years (95% confidence interval [CI] 1.97, 10.02) and 5.93 times greater among adults aged 50-64 years (95% CI 2.24, 15.65) compared with pediatric patients < 18 years of age. Likewise, hospitalized cases admitted more than two days after illness onset had 2.17 times higher odds of ICU admission or death than those admitted within two days of illness onset (95% CI 1.10, 4.25). Although certain medical conditions clearly influence the need for hospitalization among people infected with pH1N1 virus, older age and delayed time to admission each played an independent role in the progression to ICU admission or death among hospitalized patients.

Microsatellite characterization of subspecies and their hybrids in Culex pipiens complex mosquitoes along a north-south transect in the central United States of America

USDA-ARS?s Scientific Manuscript database

Mosquitoes in the Culex pipiens complex, Cx. p. pipiens L. (Cpp) and Cx. p. quinquefasciatus Say (Cpq), are morphologically similar and important vectors of the West Nile and St. Louis Encephalitis viruses in the US. They hybridize when found in sympatry, which could facilitate the transfer of adva...

Modelling space-based integral-field spectrographs and their application to Type Ia supernova cosmology

NASA Astrophysics Data System (ADS)

Shukla, Hemant; Bonissent, Alain

2017-04-01

We present the parameterized simulation of an integral-field unit (IFU) slicer spectrograph and its applications in spectroscopic studies, namely, for probing dark energy with type Ia supernovae. The simulation suite is called the fast-slicer IFU simulator (FISim). The data flow of FISim realistically models the optics of the IFU along with the propagation effects, including cosmological, zodiacal, instrumentation and detector effects. FISim simulates the spectrum extraction by computing the error matrix on the extracted spectrum. The applications for Type Ia supernova spectroscopy are used to establish the efficacy of the simulator in exploring the wider parametric space, in order to optimize the science and mission requirements. The input spectral models utilize the observables such as the optical depth and velocity of the Si II absorption feature in the supernova spectrum as the measured parameters for various studies. Using FISim, we introduce a mechanism for preserving the complete state of a system, called the partial p/partial f matrix, which allows for compression, reconstruction and spectrum extraction, we introduce a novel and efficient method for spectrum extraction, called super-optimal spectrum extraction, and we conduct various studies such as the optimal point spread function, optimal resolution, parameter estimation, etc. We demonstrate that for space-based telescopes, the optimal resolution lies in the region near R ˜ 117 for read noise of 1 e- and 7 e- using a 400 km s-1 error threshold on the Si II velocity.

Introducing CUBES: the Cassegrain U-band Brazil-ESO spectrograph

NASA Astrophysics Data System (ADS)

Bristow, Paul; Barbuy, Beatriz; Macanhan, Vanessa B.; Castilho, Bruno; Dekker, Hans; Delabre, Bernard; Diaz, Marcos; Gneiding, Clemens; Kerber, Florian; Kuntschner, Harald; La Mura, Giovanni; Reiss, Roland; Vernet, J.

2014-07-01

CUBES is a high-efficiency, medium-resolution (R ≃ 20, 000) spectrograph dedicated to the "ground based UV" (approximately the wavelength range from 300 to 400nm) destined for the Cassegrain focus of one of ESO's VLT unit telescopes in 2018/19. The CUBES project is a joint venture between ESO and Instituto de Astronomia, Geofísica e Ciências Atmosféricas (IAG) at the Universidade de São Paulo and the Brazilian Laboratório Nacional de Astrofísica (LNA). CUBES will provide access to a wealth of new and relevant information for stellar as well as extra-galactic sources. Principle science cases include the study of heavy elements in metal-poor stars, the direct determination of carbon, nitrogen and oxygen abundances by study of molecular bands in the UV range and the determination of the Beryllium abundance as well as the study of active galactic nuclei and the inter-galactic medium. With a streamlined modern instrument design, high efficiency dispersing elements and UV-sensitive detectors, it will enable a significant gain in sensitivity over existing ground based medium-high resolution spectrographs enabling vastly increased sample sizes accessible to the astronomical community. We present here a brief overview of the project, introducing the science cases that drive the design and discussing the design options and technological challenges.

Super-Comet or Big Asteroid Belt?

NASA Technical Reports Server (NTRS)

2005-01-01

[figure removed for brevity, see original site] Figure 1: Spectrograph of HD 69830

This graph of data from NASA's Spitzer Space Telescope demonstrates that the dust around a nearby star called HD 69830 (upper line) has a very similar composition to that of Comet Hale-Bopp. Spitzer spotted large amounts of this dust in the inner portion of the HD 69830 system.

The bumps and dips seen in these data, or spectra, represent the 'fingerprints' of various minerals. Spectra are created when an instrument called a spectrograph spreads light out into its basic parts, like a prism turning sunlight into a rainbow. These particular spectra reveal the presence of the silicate mineral called olivine, and more specifically, a type of olivine called forsterite, which is pictured in the inset box. Forsterite is a bright-green gem found on Earth, on the 'Green Sand Beach' of Hawaii among other places; and in space, in comets and asteroids.

Because the dust around HD 69830 has a very similar make-up to that of Comet Hale-Bopp, astronomers speculate that it might be coming from a giant comet nearly the size of Pluto. Such a comet may have been knocked into the inner solar system of HD 69830, where it is now leaving in its wake a trail of evaporated dust.

Nonetheless, astronomers say the odds that Spitzer has caught a 'super-comet' spiraling in toward its star - an unusual and relatively short-lived event - are slim. Instead, they favor the theory that the observed dust is actually the result of asteroids banging together in a massive asteroid belt.

The data of HD 69830's dust were taken by Spitzer's infrared spectrograph. The data of Comet Hale-Bopp were taken by the European Space Agency's Infrared Observatory Satellite. The picture of forsterite comes courtesy of Dr. George Rossman, California Institute of Technology, Pasadena.

Deriving Temperatures from the Homopause of Jupiter

NASA Astrophysics Data System (ADS)

Kim, Sang J.

2015-11-01

Recently, Kim et al. (Icarus, 2015) derived homopause temperatures from several places on the north and south polar regions of Jupiter by analyzing the 3-μm spectro-images of CH4, which were obtained using the Gemini Near-Infrared Spectrograph (GNIRS). The spectral resolution of the data was R~18,000, which is enough to resolve the sharp 3-μm emission lines of the P and Q branches of CH4. From the next year’s JUNO encounter with Jupiter, we are expecting low resolution spectra from JUNO’s IR 2-5 μm spectrograph, whose resolution is only R~300 at 3 μm. We will present a method to derive homopause temperatures from low-resolution spectra utilizing the gross envelopes of the P, Q, R branch lines of CH4. We will discuss possible sciences extracted from the constructed maps of homopause temperatures over the auroral or non-auroral regions of Jupiter.

Entering the Dragon’s Lair: Chinese Antiaccess Strategies and Their Implications for the United States

DTIC Science & Technology

2007-01-01

possible expansion of electronic warfare into outer space in future conflicts (Peng and Yao, 2001, p. 363): As a result of the continuous development of...information warfare units to develop viruses to attack enemy computer systems and networks .” Potential Effects of Chinese Antiaccess Measures 87...computers, enhanced user identi- fication measures, and monitoring of network activity. Given the possibility that China could nonetheless succeed in

The Military Efficacy of Individual Water Purification Filters.

DTIC Science & Technology

1990-12-01

criteria. ’t *.;as a.Lso serv ea that the KPF units grew opportunistic Pseudomonas sp . on the oroduct water side of the filters, which could have a...small pathogenic protozoan cysts such as Cryptospor-dium parvum, Giardia lamblia, and Entamoeba coli, from water over the effective use life of the...of heterotrophic bacteria such as Pseudoronas sP , Flavobacterium Sp , and other potentially harmfui organisms inside of the units. Enteric viruses are

The BigBOSS spectrograph

NASA Astrophysics Data System (ADS)

Jelinsky, Patrick; Bebek, Chris; Besuner, Robert; Carton, Pierre-Henri; Edelstein, Jerry; Lampton, Michael; Levi, Michael E.; Poppett, Claire; Prieto, Eric; Schlegel, David; Sholl, Michael

2012-09-01

BigBOSS is a proposed ground-based dark energy experiment to study baryon acoustic oscillations (BAO) and the growth of structure with a 14,000 square degree galaxy and quasi-stellar object redshift survey. It consists of a 5,000- fiber-positioner focal plane feeding the spectrographs. The optical fibers are separated into ten 500 fiber slit heads at the entrance of ten identical spectrographs in a thermally insulated room. Each of the ten spectrographs has a spectral resolution (λ/Δλ) between 1500 and 4000 over a wavelength range from 360 - 980 nm. Each spectrograph uses two dichroic beam splitters to separate the spectrograph into three arms. It uses volume phase holographic (VPH) gratings for high efficiency and compactness. Each arm uses a 4096x4096 15 μm pixel charge coupled device (CCD) for the detector. We describe the requirements and current design of the BigBOSS spectrograph. Design trades (e.g. refractive versus reflective) and manufacturability are also discussed.

An overview of instrumentation for the Large Binocular Telescope

NASA Astrophysics Data System (ADS)

Wagner, R. Mark

2010-07-01

An overview of instrumentation for the Large Binocular Telescope is presented. Optical instrumentation includes the Large Binocular Camera (LBC), a pair of wide-field (27 × 27) mosaic CCD imagers at the prime focus, and the Multi-Object Double Spectrograph (MODS), a pair of dual-beam blue-red optimized long-slit spectrographs mounted at the straight-through F/15 Gregorian focus incorporating multiple slit masks for multi-object spectroscopy over a 6 field and spectral resolutions of up to 8000. Infrared instrumentation includes the LBT Near-IR Spectroscopic Utility with Camera and Integral Field Unit for Extragalactic Research (LUCIFER), a modular near-infrared (0.9-2.5 μm) imager and spectrograph pair mounted at a bent interior focal station and designed for seeing-limited (FOV: 4 × 4) imaging, long-slit spectroscopy, and multi-object spectroscopy utilizing cooled slit masks and diffraction limited (FOV: 0.5 × 0.5) imaging and long-slit spectroscopy. Strategic instruments under development for the remaining two combined focal stations include an interferometric cryogenic beam combiner with near-infrared and thermal-infrared instruments for Fizeau imaging and nulling interferometry (LBTI) and an optical bench near-infrared beam combiner utilizing multi-conjugate adaptive optics for high angular resolution and sensitivity (LINC-NIRVANA). In addition, a fiber-fed bench spectrograph (PEPSI) capable of ultra high resolution spectroscopy and spectropolarimetry (R = 40,000-300,000) will be available as a principal investigator instrument. The availability of all these instruments mounted simultaneously on the LBT permits unique science, flexible scheduling, and improved operational support. Over the past two years the LBC and the first LUCIFER instrument have been brought into routine scientific operation and MODS1 commissioning is set to begin in the fall of 2010.

West Nile virus and other arboviral diseases--United States, 2012.

PubMed

2013-06-28

Arthropod-borne viruses (arboviruses) are transmitted to humans primarily through the bites of infected mosquitoes and ticks. West Nile virus (WNV) is the leading cause of domestically acquired arboviral disease in the United States. However, several other arboviruses also cause sporadic cases and seasonal outbreaks of neuroinvasive disease (e.g., meningitis, encephalitis, and acute flaccid paralysis). In 2012, CDC received reports of 5,780 nationally notifiable arboviral disease cases (excluding dengue). A large multistate outbreak of WNV disease accounted for 5,674 (98%) of reported cases, the highest number reported since 2003. Other reported etiologies included Eastern equine encephalitis virus (EEEV), Powassan virus (POWV), St. Louis encephalitis virus (SLEV), and California serogroup viruses such as La Crosse virus (LACV) and Jamestown Canyon virus (JCV). Arboviruses continue to cause serious illness in substantial numbers of persons in the United States. Maintaining surveillance remains important to identify outbreaks and guide prevention efforts.

The Crystallographic Structure of Panicum Mosaic Virus (PMV)

PubMed Central

Makino, Debora L.; Larson, Steven B.; McPherson, Alexander

2012-01-01

The structure of Panicum Mosaic Virus (PMV) was determined by X-ray diffraction analysis to 2.9 Å resolution. The crystals were of pseudo symmetry F23; the true crystallographic unit cell was of space group P21 with a=411.7 Å, b=403.9 Å and c=412.5 Å, with β=89.7°. The asymmetric unit was two entire T=3 virus particles, or 360 protein subunits. The structure was solved by conventional molecular replacement from two distant homologues, Cocksfoot Mottle Virus (CfMV) and Tobacco Necrosis Virus (TNV), of ~20% sequence identity followed by phase extension. The model was initially refined with exact icosahedral constraints and then with icosahedral restraints. The virus has Ca++ ions octahedrally coordinated by six aspartic acid residues on quasi threefold axes, which is completely different than for either CfMV or TNV. Amino terminal residues 1–53, 1–49 and 1-21 of the A, B and C subunits, respectively, and the four C-terminal residues (239-242) are not visible in electron density maps. The additional ordered residues of the C chain form a prominent “arm” that intertwines with symmetry equivalent “arms” at icosahedral threefold axes, as was seen in both CfMV and TNV. A 17 nucleotide hairpin segment of genomic RNA is icosahedrally ordered and bound at 60 equivalent sites at quasi twofold A–B subunit interfaces at the interior surface of the capsid. This segment of RNA may serve as a conformational switch for coat protein subunits, as has been proposed for similar RNA segments in other viruses. PMID:23123270

Spectroscopic studies of the molecular parentage of radical species in cometary comae

NASA Astrophysics Data System (ADS)

Lewis, Benjamin; Pierce, Donna; Cochran, Anita

2015-11-01

We have observed several comets using an integral-field unit spectrograph (the George and Cynthia Mitchell Spectrograph) on the 2.7m Harlan J. Smith telescope at McDonald Observatory. Full-coma spectroscopic images were obtained for various radical species (C2, C3, CH, CN, NH2). By constructing azimuthal average profiles from the full-coma spectroscopic images we can test Haser model parameters with our observations. The Haser model was used to determine production rates and possible parent lifetimes that would be consistent with the model. By iterating through a large range of possible parents lifetimes, we can see what range of values in which the Haser model is consistent with observations. Also, this type of analysis gives us perspective on how sensitive the model's fit quality is to changes in parent lifetimes. Here, we present the work completed to date, and we compare our results to other comet taxonomic surveys.

Miniaturized Environmental Monitoring Instrumentation

DOE Office of Scientific and Technical Information (OSTI.GOV)

C. B. Freidhoff

1997-09-01

The objective of the Mass Spectrograph on a Chip (MSOC) program is the development of a miniature, multi-species gas sensor fabricated using silicon micromachining technology which will be orders of magnitude smaller and lower power consumption than a conventional mass spectrometer. The sensing and discrimination of this gas sensor are based on an ionic mass spectrograph, using magnetic and/or electrostatic fields. The fields cause a spatial separation of the ions according to their respective mass-to-charge ratio. The fabrication of this device involves the combination of microelectronics with micromechanically built sensors and, ultimately, vacuum pumps. The prototype of a chemical sensormore » would revolutionize the method of performing environmental monitoring for both commercial and government applications. The portable unit decided upon was the miniaturized gas chromatograph with a mass spectrometer detector, referred to as a GC/MS in the analytical marketplace.« less

Microshutter Array Development for the Multi-Object Spectrograph for the New Generation Space Telescope, and Its Ground-based Demonstrator

NASA Technical Reports Server (NTRS)

Woodgate, Bruce E.; Moseley, Harvey; Fettig, Rainer; Kutyrev, Alexander; Ge, Jian; Fisher, Richard R. (Technical Monitor)

2001-01-01

The 6.5-m NASA/ESA/Canada New Generation Space Telescope to be operated at the L2 Lagrangian point will require a multi-object spectrograph (MOS) operating from 1 to 5 microns. Up to 3000 targets will be selected for simultaneous spectroscopy using a programmable cryogenic (approx. 35K) aperture array, consisting of a mosaic of arrays of micromirrors or microshutters. We describe the current status of the GSFC microshutter array development. The 100 micron square shutters are opened magnetically and latched open or closed electrostatically. Selection will be by two crossed one-dimensional addressing circuits. We will demonstrate the use of a 512 x 512 unit array on a ground-based IR MOS which will cover 0.6 to 5 microns, and operate rapidly to include spectroscopy of gamma ray burst afterglows.

KSC-08pd2333

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane moves the Cosmic Origins Spectrograph, or COS, toward a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2336

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lowers the Cosmic Origins Spectrograph, or COS, toward a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2332

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane moves the Cosmic Origins Spectrograph, or COS, toward a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2334

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lowers the Cosmic Origins Spectrograph, or COS, toward a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2335

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lowers the Cosmic Origins Spectrograph, or COS, toward a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2338

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lowers the Cosmic Origins Spectrograph, or COS, into a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2557

NASA Image and Video Library

2008-09-05

CAPE CANAVERAL, Fla. – In the Payload Hazardous Servicing Facility at NASA’s Kennedy Space Center, crew members with the STS-125 mission get a close look at some of the equipment associated with their mission to service NASA’s Hubble Space Telescope. In the foreground, center, are Mission Specialists Mike Massimino and Michael Good, looking at the box containing the Cosmic Origins Spectrograph, or COS, on the orbital replacement unit carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The STS-125 crew is taking part in a crew equipment interface test, which provides experience handling tools, equipment and hardware they will use on their mission. Space shuttle Atlantis is targeted to launch on the STS-125 mission Oct. 10. Photo credit: NASA/Kim Shiflett

KSC-08pd2337

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lowers the Cosmic Origins Spectrograph, or COS, into a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2339

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane settles the Cosmic Origins Spectrograph, or COS, in a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2558

NASA Image and Video Library

2008-09-05

CAPE CANAVERAL, Fla. – In the Payload Hazardous Servicing Facility at NASA’s Kennedy Space Center, crew members with the STS-125 mission get a close look at some of the equipment associated with their mission to service NASA’s Hubble Space Telescope. Looking at the box containing the Cosmic Origins Spectrograph, or COS, on the orbital replacement unit carrier are Mission Specialist Michael Good (upper right, on stand) and HST inspectors. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The STS-125 crew is taking part in a crew equipment interface test, which provides experience handling tools, equipment and hardware they will use on their mission. Space shuttle Atlantis is targeted to launch on the STS-125 mission Oct. 10. Photo credit: NASA/Kim Shiflett

The deterministic optical alignment of the HERMES spectrograph

NASA Astrophysics Data System (ADS)

Gers, Luke; Staszak, Nicholas

2014-07-01

The High Efficiency and Resolution Multi Element Spectrograph (HERMES) is a four channel, VPH-grating spectrograph fed by two 400 fiber slit assemblies whose construction and commissioning has now been completed at the Anglo Australian Telescope (AAT). The size, weight, complexity, and scheduling constraints of the system necessitated that a fully integrated, deterministic, opto-mechanical alignment system be designed into the spectrograph before it was manufactured. This paper presents the principles about which the system was assembled and aligned, including the equipment and the metrology methods employed to complete the spectrograph integration.

IFU simulator: a powerful alignment and performance tool for MUSE instrument

NASA Astrophysics Data System (ADS)

Laurent, Florence; Boudon, Didier; Daguisé, Eric; Dubois, Jean-Pierre; Jarno, Aurélien; Kosmalski, Johan; Piqueras, Laure; Remillieux, Alban; Renault, Edgard

2014-07-01

MUSE (Multi Unit Spectroscopic Explorer) is a second generation Very Large Telescope (VLT) integral field spectrograph (1x1arcmin² Field of View) developed for the European Southern Observatory (ESO), operating in the visible wavelength range (0.465-0.93 μm). A consortium of seven institutes is currently commissioning MUSE in the Very Large Telescope for the Preliminary Acceptance in Chile, scheduled for September, 2014. MUSE is composed of several subsystems which are under the responsibility of each institute. The Fore Optics derotates and anamorphoses the image at the focal plane. A Splitting and Relay Optics feed the 24 identical Integral Field Units (IFU), that are mounted within a large monolithic instrument mechanical structure. Each IFU incorporates an image slicer, a fully refractive spectrograph with VPH-grating and a detector system connected to a global vacuum and cryogenic system. During 2012 and 2013, all MUSE subsystems were integrated, aligned and tested to the P.I. institute at Lyon. After successful PAE in September 2013, MUSE instrument was shipped to the Very Large Telescope in Chile where that was aligned and tested in ESO integration hall at Paranal. After, MUSE was directly transferred in monolithic way without dismounting onto VLT telescope where the first light was overcame. This talk describes the IFU Simulator which is the main alignment and performance tool for MUSE instrument. The IFU Simulator mimics the optomechanical interface between the MUSE pre-optic and the 24 IFUs. The optomechanical design is presented. After, the alignment method of this innovative tool for identifying the pupil and image planes is depicted. At the end, the internal test report is described. The success of the MUSE alignment using the IFU Simulator is demonstrated by the excellent results obtained onto MUSE positioning, image quality and throughput. MUSE commissioning at the VLT is planned for September, 2014.

Pulsations in the atmosphere of the rapidly oscillating star 33 Lib

NASA Astrophysics Data System (ADS)

Sachkov, M.; Hareter, M.; Ryabchikova, T.; Wade, G.; Kochukhov, O.; Shulyak, D.; Weiss, W. W.

2011-10-01

In 2009, the rapidly oscillating peculiar A-type (roAp) star 33 Lib was the target of an intense observing campaign, combining ground-based spectroscopy with space photometry obtained with the Microvariability and Oscillation of STars (MOST) satellite. We collected 780 spectra using the Echelle Spectro Polarimetric Device for the Observation of Stars (ESPaDOnS) spectrograph attached at the 3.6-m Canada-France-Hawaii Telescope and 374 spectra with the Fibre-fed Echelle Spectrograph attached at the 2.56-m Nordic Optical Telescope to perform time-resolved spectroscopy of 33 Lib. In addition, we used 111 Ultraviolet and Visual Echelle Spectrograph (UVES) spectra (2004) from the European Southern Observatory archive to check mode stability. Frequency analysis of the new radial velocity (RV) measurements confirms the previously reported frequency pattern (two frequencies and the first harmonic of the main one) and reveals an additional frequency at 1.991 mHz. The new frequency solution perfectly reproduces the RV variations from the 2004 and 2009 observational sets, providing strong support for p mode stability in this roAp star over at least 5 years.

Immersion Gratings for Infrared High-resolution Spectroscopy

NASA Astrophysics Data System (ADS)

Sarugaku, Yuki; Ikeda, Yuji; Kobayashi, Naoto; Kaji, Sayumi; Sukegawa, Takashi; Sugiyama, Shigeru; Nakagawa, Takao; Arasaki, Takayuki; Kondo, Sohei; Nakanishi, Kenshi; Yasui, Chikako; Kawakita, Hideyo

2016-10-01

High-resolution spectroscopy in the infrared wavelength range is essential for observations of minor isotopologues, such as HDO for water, and prebiotic organic molecules like hydrocarbons/P-bearing molecules because numerous vibrational molecular bands (including non-polar molecules) are located in this wavelength range. High spectral resolution enables us to detect weak lines without spectral line confusion. This technique has been widely used in planetary sciences, e.g., cometary coma (H2O, CO, and organic molecules), the martian atmosphere (CH4, CO2, H2O and HDO), and the upper atmosphere of gas giants (H3+ and organic molecules such as C2H6). Spectrographs with higher resolution (and higher sensitivity) still have a potential to provide a plenty of findings. However, because the size of spectrographs scales with the spectral resolution, it is difficult to realize it.Immersion grating (IG), which is a diffraction grating wherein the diffraction surface is immersed in a material with a high refractive index (n > 2), provides n times higher spectral resolution compared to a reflective grating of the same size. Because IG reduces the size of spectrograph to 1/n compared to the spectrograph with the same spectral resolution using a conventional reflective grating, it is widely acknowledged as a key optical device to realize compact spectrographs with high spectral resolution.Recently, we succeeded in fabricating a CdZnTe immersion grating with the theoretically predicted diffraction efficiency by machining process using an ultrahigh-precision five-axis processing machine developed by Canon Inc. Using the same technique, we completed a practical germanium (Ge) immersion grating with both a reflection coating on the grating surface and the an AR coating on the entrance surface. It is noteworthy that the wide wavelength range from 2 to 20 um can be covered by the two immersion gratings.In this paper, we present the performances and the applications of the immersion gratings, including the development of a long-NIR (2-5um) high-resolution (R=80,000) spectrograph with Ge-immersion grating, VINROUGE, which is a prototype for the TMT MIR instrument.

The Faint End of the Lyman Alpha Luminosity Function at 2 < z < 3.8

NASA Astrophysics Data System (ADS)

Devarakonda, Yaswant; Livermore, Rachael; Indahl, Briana; Wold, Isak; Davis, Dustin; Finkelstein, Steven

2018-01-01

Most current models predict that our universe is mostly composed of small, dim galaxies. Due to these galaxies being so faint, it is very difficult to study these types of galaxies outside of our local universe. This is particularly an issue for studying how these small galaxies evolved over their lifetimes. With the benefit of gravitational lensing, however, we are able to observe galaxies that are farther and fainter than ever before possible. In this particular study, we focus on Lyman-Alpha emitting galaxies between the redshifts of 2-3.8, so that we may study these galaxies during the epoch of peak star formation in the universe. We use the McDonald Observatory 2.7, Harlan Smith telescope with the VIRUS-P IFU spectrograph to observe several Hubble Frontier Field lensing clusters to spectroscopically discover faint galaxies over this redshift range. In addition to providing insight into the faint-end slope of the Lyman alpha luminosity function, the spectroscopic redshifts will allow us to better constrain the mass models of the foreground clusters, such as Abell 370, so that we may better understand lensing effects for this and future studies.

Slit Function Measurement of An Imaging Spectrograph Using Fourier Transform Techniques

NASA Technical Reports Server (NTRS)

Park, Hongwoo; Swimyard, Bruce; Jakobsen, Peter; Moseley, Harvey; Greenhouse, Matthew

2004-01-01

Knowledge of a spectrograph slit function is necessary to interpret the unresolved lines in an observed spectrum. A theoretical slit function can be calculated from the sizes of the entrance slit, the detector aperture when it functions as an exit slit, the dispersion characteristic of the disperser, and the point spread function of the spectrograph. A measured slit function is preferred to the theoretical one for the correct interpretation of the spectral data. In a scanning spectrometer with a single exit slit, the slit function is easily measured. In a fixed grating/or disperser spectrograph, illuminating the entrance slit with a near monochromatic light from a pre-monochrmator or a tunable laser and varying the wavelength of the incident light can measure the slit function. Even though the latter technique had been used successfully for the slit function measurements, it had been very laborious and it would be prohibitive to an imaging spectrograph or a multi-object spectrograph that has a large field of view. We explore an alternative technique that is manageable for the measurements. In the proposed technique, the imaging spectrograph is used as a detector of a Fourier transform spectrometer. This method can be applied not only to an IR spectrograph but also has a potential to a visible/UV spectrograph including a wedge filter spectrograph. This technique will require a blackbody source of known temperature and a bolometer to characterize the interferometer part of the Fourier Transform spectrometer. This pa?er will describe the alternative slit function measurement technique using a Fourier transform spectrometer.

Mauna Kea Spectrographic Explorer (MSE): a conceptual design for multi-object high resolution spectrograph

NASA Astrophysics Data System (ADS)

Zhang, Kai; Zhu, Yongtian; Hu, Zhongwen

2016-08-01

The Maunakea Spectroscopic Explorer (MSE) project will transform the CFHT 3.6m optical telescope into a 10m class dedicated multi-object spectroscopic facility, with an ability to simultaneously measure thousands of objects with a spectral resolution range spanning 2,000 to 40,000. MSE will develop two spectrographic facilities to meet the science requirements. These are respectively, the Low/Medium Resolution spectrographs (LMRS) and High Resolution spectrographs (HRS). Multi-object high resolution spectrographs with total of 1,156 fibers is a big challenge, one that has never been attempted for a 10m class telescope. To date, most spectral survey facilities work in single order low/medium resolution mode, and only a few Wide Field Spectrographs (WFS) provide a cross-dispersion high resolution mode with a limited number of orders. Nanjing Institute of Astronomical Optics and Technology (NIAOT) propose a conceptual design with the use of novel image slicer arrays and single order immersed Volume Phase Holographic (VPH) grating for the MSE multi-object high resolution spectrographs. The conceptual scheme contains six identical fiber-link spectrographs, each of which simultaneously covers three restricted bands (λ/30, λ/30, λ/15) in the optical regime, with spectral resolution of 40,000 in Blue/Visible bands (400nm / 490nm) and 20,000 in Red band (650nm). The details of the design is presented in this paper.

Crystallized N-terminal domain of influenza virus matrix protein M1 and method of determining and using same

NASA Technical Reports Server (NTRS)

Luo, Ming (Inventor); Sha, Bingdong (Inventor)

2000-01-01

The matrix protein, M1, of influenza virus strain A/PR/8/34 has been purified from virions and crystallized. The crystals consist of a stable fragment (18 Kd) of the M1 protein. X-ray diffraction studies indicated that the crystals have a space group of P3.sub.t 21 or P3.sub.2 21. Vm calculations showed that there are two monomers in an asymmetric unit. A crystallized N-terminal domain of M1, wherein the N-terminal domain of M1 is crystallized such that the three dimensional structure of the crystallized N-terminal domain of M1 can be determined to a resolution of about 2.1 .ANG. or better, and wherein the three dimensional structure of the uncrystallized N-terminal domain of M1 cannot be determined to a resolution of about 2.1 .ANG. or better. A method of purifying M1 and a method of crystallizing M1. A method of using the three-dimensional crystal structure of M1 to screen for antiviral, influenza virus treating or preventing compounds. A method of using the three-dimensional crystal structure of M1 to screen for improved binding to or inhibition of influenza virus M1. The use of the three-dimensional crystal structure of the M1 protein of influenza virus in the manufacture of an inhibitor of influenza virus M1. The use of the three-dimensional crystal structure of the M1 protein of influenza virus in the screening of candidates for inhibition of influenza virus M1.

Expression and X-Ray Structural Determination of the Nucleoprotein of Lassa Fever Virus.

PubMed

Qi, Xiaoxuan; Wang, Wenjian; Dong, Haohao; Liang, Yuying; Dong, Changjiang; Ly, Hinh

2018-01-01

We describe methods to express the nucleoprotein (NP) of Lassa fever virus (LASV) in E. coli, to purify and crystallize it using the sitting-drop vapor diffusion method. The crystals were screened using Rigaku micro-007 X-ray generator and a dataset was collected at a resolution of 2.36 Å. The crystals belong to space group P3, with the unit cell parameters a = b = 176.35 Å, c = 56.40 Å, α = β = 90°, and γ = 120°. Using the X-ray diffraction method, we constructed a three-dimensional structure of the LASV NP that should aid in the development of novel therapeutic strategies against this virus, for which vaccine and effective treatment modalities are currently unavailable.

Suppression of the near-infrared OH night-sky lines with fibre Bragg gratings - first results

NASA Astrophysics Data System (ADS)

Ellis, S. C.; Bland-Hawthorn, J.; Lawrence, J.; Horton, A. J.; Trinh, C.; Leon-Saval, S. G.; Shortridge, K.; Bryant, J.; Case, S.; Colless, M.; Couch, W.; Freeman, K.; Gers, L.; Glazebrook, K.; Haynes, R.; Lee, S.; Löhmannsröben, H.-G.; O'Byrne, J.; Miziarski, S.; Roth, M.; Schmidt, B.; Tinney, C. G.; Zheng, J.

2012-09-01

The background noise between 1 and 1.8 μm in ground-based instruments is dominated by atmospheric emission from hydroxyl molecules. We have built and commissioned a new instrument, the Gemini Near-infrared OH Suppression Integral Field Unit (IFU) System (GNOSIS), which suppresses 103 OH doublets between 1.47 and 1.7 μm by a factor of ≈1000 with a resolving power of ≈10 000. We present the first results from the commissioning of GNOSIS using the IRIS2 spectrograph at the Anglo-Australian Telescope. We present measurements of sensitivity, background and throughput. The combined throughput of the GNOSIS fore-optics, grating unit and relay optics is ≈36 per cent, but this could be improved to ≈46 per cent with a more optimal design. We measure strong suppression of the OH lines, confirming that OH suppression with fibre Bragg gratings will be a powerful technology for low-resolution spectroscopy. The integrated OH suppressed background between 1.5 and 1.7 μm is reduced by a factor of 9 compared to a control spectrum using the same system without suppression. The potential of low-resolution OH-suppressed spectroscopy is illustrated with example observations of Seyfert galaxies and a low-mass star. The GNOSIS background is dominated by detector dark current below 1.67 μm and by thermal emission above 1.67 μm. After subtracting these, we detect an unidentified residual interline component of ≈860 ± 210 photons s-1 m-2 arcsec-2 μm-1, comparable to previous measurements. This component is equally bright in the suppressed and control spectra. We have investigated the possible source of the interline component, but were unable to discriminate between a possible instrumental artefact and intrinsic atmospheric emission. Resolving the source of this emission is crucial for the design of fully optimized OH suppression spectrographs. The next-generation OH suppression spectrograph will be focused on resolving the source of the interline component, taking advantage of better optimization for a fibre Bragg grating feed incorporating refinements of design based on our findings from GNOSIS. We quantify the necessary improvements for an optimal OH suppressing fibre spectrograph design.

Epidemiology and Transmission of Hepatitis A Virus and Hepatitis E Virus Infections in the United States.

PubMed

Hofmeister, Megan G; Foster, Monique A; Teshale, Eyasu H

2018-04-30

There are many similarities in the epidemiology and transmission of hepatitis A virus (HAV) and hepatitis E virus (HEV) genotype (gt)3 infections in the United States. Both viruses are enterically transmitted, although specific routes of transmission are more clearly established for HAV than for HEV: HAV is restricted to humans and primarily spread through the fecal-oral route, while HEV is zoonotic with poorly understood modes of transmission in the United States. New cases of HAV infection have decreased dramatically in the United States since infant vaccination was recommended in 1996. In recent years, however, outbreaks have occurred among an increasingly susceptible adult population. Although HEV is the most common cause of acute viral hepatitis in developing countries, it is rarely diagnosed in the United States. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

A porcine G9 rotavirus strain shares neutralization and VP7 phylogenetic sequence lineage 3 characteristics with contemporary human G9 rotavirus strains.

PubMed

Hoshino, Yasutaka; Honma, Shinjiro; Jones, Ronald W; Ross, Jerri; Santos, Norma; Gentsch, Jon R; Kapikian, Albert Z; Hesse, Richard A

2005-02-05

Of five globally important VP7 (G) serotypes (G1-4 and 9) of group A rotaviruses (the single most important etiologic agents of infantile diarrhea worldwide), G9 continues to attract considerable attention because of its unique natural history. Serotype G9 rotavirus was isolated from a child with diarrhea first in the United States in 1983 and subsequently in Japan in 1985. Curiously, soon after their detection, G9 rotaviruses were not detected for about a decade in both countries and then reemerged in both countries in the mid-1990s. Unexpectedly, however, such reemerged G9 strains were distinct genetically and molecularly from those isolated in the 1980s. Thus, the origin of the reemerged G9 viruses remains an enigma. Sequence analysis has demonstrated that the G9 rotavirus VP7 gene belongs to one of at least three phylogenetic lineages: lineage 1 (strains isolated in the 1980s in the United States and Japan), lineage 2 (strains first isolated in 1986 and exclusively in India thus far), and lineage 3 (strains that emerged/reemerged in the mid-1990s). Currently, lineage 3 G9 viruses are the most frequently detected G9 strains globally. We characterized a porcine rotavirus (A2 strain) isolated in the United States that was known to belong to the P[7] genotype but had not been serotyped by neutralization. The A2 strain was found to bear serotype G9 and P9 specificities as well as NSP4 [B] and subgroup I characteristics. By VP7-specific neutralization, the porcine G9 strain was more closely related to lineage 3 viruses than to lineage 1 or 2 viruses. Furthermore, by sequence analysis, the A2 VP7 was shown to belong to lineage 3 G9. These findings raise intriguing questions regarding possible explanations for the emergence of variations among the G9 strains.

Complete Genome Sequence of Tomato Mosaic Virus Isolated from Jasmine in the United States

PubMed Central

Fillmer, Kornelia; Adkins, Scott; Pongam, Patchara

2015-01-01

Tomato mosaic virus was reported from jasmine in Florida. We present the first complete genome sequence of a tomato mosaic virus isolate from this woody perennial plant in the United States. PMID:26159525

A Giant Planet Around a Metal-Poor Star of Extragalactic Origin

NASA Astrophysics Data System (ADS)

Setiawan, Johny; Klement, Rainer J.; Henning, Thomas; Rix, Hans-Walter; Rochau, Boyke; Rodmann, Jens; Schulze-Hartung, Tim

2010-12-01

Stars in their late stage of evolution, such as horizontal branch stars, are still largely unexplored for planets. We detected a planetary companion around HIP 13044, a very metal-poor star on the red horizontal branch, on the basis of radial velocity observations with a high-resolution spectrograph at the 2.2-meter Max-Planck Gesellschaft-European Southern Observatory telescope. The star’s periodic radial velocity variation of P = 16.2 days caused by the planet can be distinguished from the periods of the stellar activity indicators. The minimum mass of the planet is 1.25 times the mass of Jupiter and its orbital semimajor axis is 0.116 astronomical units. Because HIP 13044 belongs to a group of stars that have been accreted from a disrupted satellite galaxy of the Milky Way, the planet most likely has an extragalactic origin.

Production, Purification, Crystallization and Preliminary X-ray Structural Studies of Adeno-Associated Virus Serotype 5

DOE Office of Scientific and Technical Information (OSTI.GOV)

DiMattia,M.; Govindasamy, L.; Levy, H.

2005-01-01

Adeno-associated virus serotype 5 (AAV5) is under development for gene-therapy applications for the treatment of cystic fibrosis. To elucidate the structural features of AAV5 that control its enhanced transduction of the apical surface of airway epithelia compared with other AAV serotypes, X-ray crystallographic studies of the viral capsid have been initiated. The production, purification, crystallization and preliminary crystallographic analysis of empty AAV5 viral capsids are reported. The crystals diffract X-rays to beyond 3.2 Angstroms resolution using synchrotron radiation and belong to the orthorhombic space group P2{sub 1}2{sub 1}2{sub 1}, with unit-cell parameters a = 264.7, b = 447.9, c =more » 629.7 Angstroms. There is one complete T = 1 viral capsid per asymmetric unit. The orientation and position of the viral capsid in the asymmetric unit have been determined by rotation and translation functions, respectively, and the AAV5 structure determination is in progress.« less

"The evil virus cell": Students‘ knowledge and beliefs about viruses

PubMed Central

Enzinger, Sonja M.; Fink, Andreas

2017-01-01

Education about virus biology at school is of pivotal interest to raise public awareness concerning means of disease transmission and, thus, methods to prevent infection, and to reduce unnecessary antibiotic treatment due to patient pressure on physicians in case of viral diseases such as influenza. This study aimed at making visible the knowledge of Austrian high school and university students with respect to virus biology, virus structure and health-education issues. The data presented here stem from comprehensive questionnaire analyses, including the task to draw a virus, from a cross-sectional study with 133 grade 7 and 199 grade 10 high school students, and 133 first-year biology and 181 first-year non-biology university students. Analyses were performed both quantitatively and qualitatively. ANOVA revealed a highly significant group effect for total knowledge relating to virus biology and health issues (F(3, 642) = 44.17, p < 0.01, η2p = 0.17). Specific post-hoc tests by means of the Tukey test showed significant differences between all groups (p < .01) with the exception of 1st year non-biology students and grade 10 high school students. Students enrolled in university-level biology outperformed all other groups, even though they had not yet encountered this topic at their courses; part of this phenomenon might be due to their affinity for learning about biological topics. However, even many first-year biology students had a high number of severe misconceptions, e.g., defining a virus as a pro- or eukaryotic cell, or falsely naming malaria as a viral disease. Since there was no significant difference in virus-related knowledge between high schools, virus biology seems to have been taught similarly among the tested schools. However, the majority of participants stated that the virus-related knowledge they had acquired at school was not sufficient. Based on the results presented here we urgently suggest improving and intensifying teaching this topic at school, since virus-related knowledge was by far too fragmentary among many participants. Such lack of health-relevant knowledge may contribute to pressure on physicians by patients to unnecessarily prescribe antibiotics, and possibly lead to potentially dangerous neglect concerning vaccination. The effectiveness of newly developed virus-related teaching units and material could be tested with the instrument used here. PMID:28350815

"The evil virus cell": Students' knowledge and beliefs about viruses.

PubMed

Simon, Uwe K; Enzinger, Sonja M; Fink, Andreas

2017-01-01

Education about virus biology at school is of pivotal interest to raise public awareness concerning means of disease transmission and, thus, methods to prevent infection, and to reduce unnecessary antibiotic treatment due to patient pressure on physicians in case of viral diseases such as influenza. This study aimed at making visible the knowledge of Austrian high school and university students with respect to virus biology, virus structure and health-education issues. The data presented here stem from comprehensive questionnaire analyses, including the task to draw a virus, from a cross-sectional study with 133 grade 7 and 199 grade 10 high school students, and 133 first-year biology and 181 first-year non-biology university students. Analyses were performed both quantitatively and qualitatively. ANOVA revealed a highly significant group effect for total knowledge relating to virus biology and health issues (F(3, 642) = 44.17, p < 0.01, η2p = 0.17). Specific post-hoc tests by means of the Tukey test showed significant differences between all groups (p < .01) with the exception of 1st year non-biology students and grade 10 high school students. Students enrolled in university-level biology outperformed all other groups, even though they had not yet encountered this topic at their courses; part of this phenomenon might be due to their affinity for learning about biological topics. However, even many first-year biology students had a high number of severe misconceptions, e.g., defining a virus as a pro- or eukaryotic cell, or falsely naming malaria as a viral disease. Since there was no significant difference in virus-related knowledge between high schools, virus biology seems to have been taught similarly among the tested schools. However, the majority of participants stated that the virus-related knowledge they had acquired at school was not sufficient. Based on the results presented here we urgently suggest improving and intensifying teaching this topic at school, since virus-related knowledge was by far too fragmentary among many participants. Such lack of health-relevant knowledge may contribute to pressure on physicians by patients to unnecessarily prescribe antibiotics, and possibly lead to potentially dangerous neglect concerning vaccination. The effectiveness of newly developed virus-related teaching units and material could be tested with the instrument used here.

Occupancy of RNA Polymerase II Phosphorylated on Serine 5 (RNAP S5P) and RNAP S2P on Varicella-Zoster Virus Genes 9, 51, and 66 Is Independent of Transcript Abundance and Polymerase Location within the Gene.

PubMed

Henderson, Heather H; Timberlake, Kensey B; Austin, Zoe A; Badani, Hussain; Sanford, Bridget; Tremblay, Keriann; Baird, Nicholas L; Jones, Kenneth; Rovnak, Joel; Frietze, Seth; Gilden, Don; Cohrs, Randall J

2016-02-01

Regulation of gene transcription in varicella-zoster virus (VZV), a ubiquitous human neurotropic alphaherpesvirus, requires coordinated binding of multiple host and virus proteins onto specific regions of the virus genome. Chromatin immunoprecipitation (ChIP) is widely used to determine the location of specific proteins along a genomic region. Since the size range of sheared virus DNA fragments governs the limit of accurate protein localization, particularly for compact herpesvirus genomes, we used a quantitative PCR (qPCR)-based assay to determine the efficiency of VZV DNA shearing before ChIP, after which the assay was used to determine the relationship between transcript abundance and the occupancy of phosphorylated RNA polymerase II (RNAP) on the gene promoter, body, and terminus of VZV genes 9, 51, and 66. The abundance of VZV gene 9, 51, and 66 transcripts in VZV-infected human fetal lung fibroblasts was determined by reverse transcription-linked quantitative PCR. Our results showed that the C-terminal domain of RNAP is hyperphosphorylated at serine 5 (S5(P)) on VZV genes 9, 51, and 66 independently of transcript abundance and the location within the virus gene at both 1 and 3 days postinfection (dpi). In contrast, phosphorylated serine 2 (S2(P))-modified RNAP was not detected at any virus gene location at 3 dpi and was detected at levels only slightly above background levels at 1 dpi. Regulation of herpesvirus gene transcription is an elaborate choreography between proteins and DNA that is revealed by chromatin immunoprecipitation (ChIP). We used a quantitative PCR-based assay to determine fragment size after DNA shearing, a critical parameter in ChIP assays, and exposed a basic difference in the mechanism of transcription between mammalian cells and VZV. We found that hyperphosphorylation at serine 5 of the C-terminal domain of RNAP along the lengths of VZV genes (the promoter, body, and transcription termination site) was independent of mRNA abundance. In contrast, little to no enrichment of serine 3 phosphorylation of RNAP was detected at these virus gene regions. This is distinct from the findings for RNAP at highly regulated host genes, where RNAP S5(P) occupancy decreased and S2(P) levels increased as the polymerase transited through the gene. Overall, these results suggest that RNAP associates with human and virus transcriptional units through different mechanisms. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Spitzer Sees Water Loud and Clear

NASA Technical Reports Server (NTRS)

2007-01-01

This plot of infrared data, called a spectrum, shows the strong signature of water vapor deep within the core of an embryonic star system, called NGC 1333-IRAS 4B.

The data were captured by NASA's Spitzer Space Telescope using an instrument called a spectrograph. A spectrograph collects light and sorts it according to color, or wavelength. In this case, infrared light from NGC 1333-IRAS 4B was broken up into the wavelengths listed on the horizontal axis of the plot. The sharp spikes, called spectral lines, occur at wavelengths at which the stellar object is particularly bright. The signature of water vapor is revealed in the pattern of wavelengths at which the spikes appear.

By comparing the observed data to a model (lower curve), astronomers can also determine the physical and chemical details of the region. For example, astronomers say these data suggest that ice in a cocoon surrounding the forming star is falling inward. The ice then smacks supersonically into a dusty planet-forming disk surrounding the stellar embryo, heats up and vaporizes quickly, releasing the infrared light that Spitzer collected.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Che-Yen; Karolinska Institute Structural Virology, F68 Karolinska University Hospital, SE-14186 Stockholm; Institute of Public Health, National Yang-Ming University, 112 Taipei,Taiwan

A recombinant virus-like particle that is a potential oral hepatitis E vaccine was crystallized. Diffraction data were collected to 8.3 Å resolution and the X-ray structure was phased with the aid of a low-resolution density map determined using cryo-electron microscopy data. Hepatitis E virus (HEV) accounts for the majority of enterically transmitted hepatitis infections worldwide. Currently, there is no specific treatment for or vaccine against HEV. The major structural protein is derived from open reading frame (ORF) 2 of the viral genome. A potential oral vaccine is provided by the virus-like particles formed by a protein construct of partial ORF3more » protein (residue 70–123) fused to the N-terminus of the ORF2 protein (residues 112–608). Single crystals obtained by the hanging-drop vapour-diffusion method at 293 K diffract X-rays to 8.3 Å resolution. The crystals belong to space group P2{sub 1}2{sub 1}2{sub 1}, with unit-cell parameters a = 337, b = 343, c = 346 Å, α = β = γ = 90°, and contain one particle per asymmetric unit.« less

Preliminary crystallographic analysis of avian infectious bronchitis virus main protease

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Jun; Shen, Wei; Liao, Ming, E-mail: mliao@scau.edu.cn

The avian infectious bronchitis virus main protease has been crystallized; crystals diffract to 2.7 Å resolution. Infectious bronchitis virus (IBV) is the prototype of the genus Coronavirus. It causes a highly contagious disease which affects the respiratory, reproductive, neurological and renal systems of chickens, resulting great economic losses in the poultry industry worldwide. The coronavirus (CoV) main protease (M{sup pro}), which plays a pivotal role in viral gene expression and replication through a highly complex cascade involving the proteolytic processing of replicase polyproteins, is an attractive target for antiviral drug design. In this study, IBV M{sup pro} was overexpressed inmore » Escherichia coli. Crystals suitable for X-ray crystallography have been obtained using microseeding techniques and belong to space group P6{sub 1}22. X-ray diffraction data were collected in-house to 2.7 Å resolution from a single crystal. The unit-cell parameters were a = b = 119.1, c = 270.7 Å, α = β = 90, γ = 120°. Three molecules were predicted to be present in the asymmetric unit from a calculated self-rotation function.« less

High-contrast imaging with the JWST-NIRSpec Integral Field Unit

NASA Astrophysics Data System (ADS)

Ygouf, M.; Beichman, C.; Hodapp, K.; Roellig, T.

2017-12-01

With its integral field unit, the near-infrared spectrograph NIRSPEC on JWST will allow to measure high-resolution spectra into the 3-\\SI{5}μm range with an increased sensitivity over ground-based systems. This capability will considerably extend our knowledge of brown dwarfs and bright exoplanets at large separations from their host star. But because there is not any coronagraph on NIRSPEC, the performance in term of contrast at close separation will be extremely limited. In this communication, we explore possibilities to further push this limitation by exploiting the wavelength diversity offered by the spectral differential imaging strategy.

Sequence and immunogenicity of a clinically approved novel measles virus vaccine vector

PubMed Central

Zuniga, Amando; Liniger, Mathias; Morin, Teldja Neige Azzouz; Marty, René R.; Wiegand, Marian; Ilter, Orhan; Weibel, Sara; Billeter, Martin A.; Knuchel, Marlyse C.; Naim, Hussein Y.

2013-01-01

The measles virus vaccine (MVbv) is a clinically certified and well-tolerated vaccine strain that has been given both parenterally and mucosally. It has been extensively used in children and has proven to be safe and effective in eliciting protective immunity. This specific strain was therefore chosen to generate a measles viral vector. The genome of the commercial MVbv vaccine strain was isolated, sequenced and a plasmid, p(+)MVb, enabling transcription of the viral antigenome and rescue of MVb, was constructed. Phylogenic and phenotypic analysis revealed that MVbv and the rescued MVb constitute another evolutionary branch within the hitherto classified measles vaccines. Plasmid p(+)MVb was modified by insertion of artificial MV-type transcription units (ATUs) for the generation of recombinant viruses (rMVb) expressing additional proteins. Replication characteristics and immunogenicity of rMVb vectors were similar to the parental MVbv and to other vaccine strains. The expression of the additional proteins was stable over 10 serial virus transfers, which corresponds to an amplification greater than 1020. The excellent safety record and its efficient application as aerosol may add to the usefulness of the derived vectors. PMID:23324616

Extended analysis of fifth spectrum of bromine: Br V

NASA Astrophysics Data System (ADS)

Riyaz, A.; Tauheed, A.; Rahimullah, K.

2014-11-01

The fifth spectrum of bromine (Br V) has been studied in the 200-2400 Å wavelength region. The spectrum was photographed on a 3-m normal incidence vacuum spectrograph at the St. Francis Xavier University, Antigonish (Canada) and 6.65-m grazing incidence spectrograph at the Zeeman laboratory (Amsterdam). The light sources used were a triggered spark and sliding spark. The ground configuration of Br V is 4s24p. The excited configurations 4s4p2+4s2(4d+5d+5s+6s+7s+5g+6g)+4s4p(5p+4f)+4p24d in the even parity system and the 4p3+4s2(5p+6p+7p+4f)+4s4p4d+4s4p5s configurations in the odd parity system have been studied. Relativistic Hartree-Fock (HFR) and least squares fitted (LSF) parametric calculations have been used to interpret the observed spectrum. 99 levels of Br V have now been established, 43 being new. Among 394 classified spectral lines, 181 are newly classified. The level 4s27s 2S1/2 is revised. We estimate the accuracy of our measured wavelengths for sharp and unblended lines to be±0.005 Å. The ionization limit is determined as 479,657±200 cm-1 (59.470±0.025 eV).

A new Cassegrain calibration lamp unit for the Blanco Telescope

NASA Astrophysics Data System (ADS)

Points, S. D.; James, D. J.; Tighe, R.; Montané, A.; David, N.; Martínez, M.

2016-08-01

The f/8 RC-Cassegrain Focus of the Blanco Telescope at Cerro Tololo Inter-American Observatory, hosts two new instruments: COSMOS, a multi-object spectrograph in the visible wavelength range (350 - 1030nm), and ARCoIRIS, a NIR cross-dispersed spectrograph featuring 6 spectral orders spanning 0.8 - 2.45μm. Here we describe a calibration lamp unit designed to deliver the required illumination at the telescope focal plane for both instruments. These requirements are: (1) an f/8 beam of light covering a spot of 92mm diameter (or 10 arcmin) for a wavelength range of 0.35μm through 2.5μm and (2) no saturation of flat-field calibrations for the minimal exposure times permitted by each instrument, and (3) few saturated spectral lines when using the wavelength calibration lamps for the instruments. To meet these requirements this unit contains an adjustable quartz halogen lamp for flat-field calibrations, and one hollow cathode lamp and four penray lamps for wavelength calibrations. The wavelength calibration lamps are selected to provide optimal spectral coverage for the instrument mounted and can be used individually or in sets. The device designed is based on an 8-inch diameter integrating sphere, the output of which is optimized to match the f/8 calibration input delivery system which is a refractive system based on fused-silica lenses. We describe the optical design, the opto-mechanical design, the electronic control and give results of the performance of the system.

VizieR Online Data Catalog: FGK dwarfs atmospheric parameters (Ryabchikova+, 2016)

NASA Astrophysics Data System (ADS)

Ryabchikova, T.; Piskunov, N.; Pakhomov, Y.; Tsymbal, V.; Titarenko, A.; Sitnova, T.; Alexeeva, S.; Fossati, L.; Mashonkina, L.

2016-08-01

For the spectroscopic analysis, we choose the 13 MS stars including the Sun (Table 1) in the 4900-6600K temperature range and with metallicity between [Fe/H]=-1.5 and +0.3dex. All the stars, except HD 149026, have, at least, one interferometric determination of radius and effective temperature. Spectra of the programme stars were obtained with different spectrographs. Most data were extracted from the following archives: the UVES/VLT and HARPS/3.6m spectrographs at ESO,2 the ELODIE/1.93-m spectrograph3 at the Observatoire de Haute Provence, and the ESPaDONs spectrograph at the Canada-France-Hawaii Telescope (CFHT). Spectra of beta Vir and HD 103095 were obtained with the FOCES spectrograph at 2.2-m telescope of the Calar Alto Observatory. One of the spectra of 61 Vir was obtained with the Hamilton Echelle Spectrograph attached to the Shane 3-m telescope of the Lick Observatory. Spectra of few stars, including that of the Sun reflected from Ganymede, were obtained with the HiReS/Keck spectrograph. (3 data files).

Critical illness in children with influenza A/pH1N1 2009 infection in Canada.

PubMed

Jouvet, Philippe; Hutchison, Jamie; Pinto, Ruxandra; Menon, Kusum; Rodin, Rachel; Choong, Karen; Kesselman, Murray; Veroukis, Stasa; André Dugas, Marc; Santschi, Miriam; Guerguerian, Anne-Marie; Withington, Davinia; Alsaati, Basem; Joffe, Ari R; Drews, Tanya; Skippen, Peter; Rolland, Elizabeth; Kumar, Anand; Fowler, Robert

2010-09-01

To describe characteristics, treatment, and outcomes of critically ill children with influenza A/pandemic influenza A virus (pH1N1) infection in Canada. An observational study of critically ill children with influenza A/pH1N1 infection in pediatric intensive care units (PICUs). Nine Canadian PICUs. A total of 57 patients admitted to PICUs between April 16, 2009 and August 15, 2009. None. Characteristics of critically ill children with influenza A/pH1N1 infection were recorded. Confirmed intensive care unit cases were compared with a national surveillance database containing all hospitalized pediatric patients with influenza A/pH1N1 infection. Risk factors were assessed with a Cox proportional hazard model. The PICU cohort and national surveillance data were compared, using chi-square tests. Fifty-seven children were admitted to the PICU for community-acquired influenza A/pH1N1 infection. One or more chronic comorbid illnesses were observed in 70.2% of patients, and 24.6% of patients were aboriginal. Mechanical ventilation was used in 68% of children, 20 children (35.1%) had acute lung injury on the first day of admission, and the median duration of ventilation was 6 days (range, 0-67 days). The PICU mortality rate was 7% (4 of 57 patients). When compared with nonintensive care unit hospitalized children, PICU children were more likely to have a chronic medical condition (relative risk, 1.73); aboriginal ethnicity was not a risk factor of intensive care unit admission. During the first outbreak of influenza A/pH1N1 infection, when the population was naïve to this novel virus, severe illness was common among children with underlying chronic conditions and aboriginal children. Influenza A/pH1N1-related critical illness in children was associated with severe hypoxemic respiratory failure and prolonged mechanical ventilation. However, this higher rate and severity of respiratory illness did not result in an increased mortality when compared with seasonal influenza.

Molecular Epidemiology of Measles Viruses in the United States, 1997–2001

PubMed Central

Liffick, Stephanie L.; Rota, Jennifer S.; Katz, Russell S.; Redd, Susan; Papania, Mark; Bellini, William J.

2002-01-01

From 1997 to 2001, sequence data from 55 clinical specimens were obtained from confirmed measles cases in the United States, representing 21 outbreaks and 34 sporadic cases. Sequence analysis indicated the presence of 11 of the recognized genotypes. The most common genotypes detected were genotype D6, usually identified from imported cases from Europe, and genotype D5, associated with importations from Japan. A number of viruses belonging to genotype D4 were imported from India and Pakistan. Overall, viral genotypes were determined for 13 chains of transmission with an unknown source of virus, and seven different genotypes were identified. Therefore, the diversity of Measles virus genotypes observed in the United States from 1997 to 2001 reflected multiple imported sources of virus and indicated that no strain of measles is endemic in the United States. PMID:12194764

The Spatially Resolved Star Formation Law From Integral Field Spectroscopy: VIRUS-P Observations of NGC 5194

NASA Astrophysics Data System (ADS)

Blanc, Guillermo A.; Heiderman, Amanda; Gebhardt, Karl; Evans, Neal J., II; Adams, Joshua

2009-10-01

We investigate the relation between the star formation rate (SFR) surface density (ΣSFR) and the mass surface density of gas (Σgas) in NGC 5194 (a.k.a. M51a, Whirlpool Galaxy). Visible Integral field Replicable Unit Spectrograph Prototype (VIRUS-P) integral field spectroscopy of the central 4.1 × 4.1 kpc2 of the galaxy is used to measure Hα, Hβ, [O III]λ5007, [N II]λλ6548,6584, and [S II]λλ6717,6731 emission line fluxes for 735 regions ~170 pc in diameter. We use the Balmer decrement to calculate nebular dust extinctions, and correct the observed fluxes in order to accurately measure ΣSFR in each region. Archival H I 21 cm and CO maps with spatial resolution similar to that of VIRUS-P are used to measure the atomic and molecular gas surface density for each region. We present a new method for fitting the star formation law (SFL), which includes the intrinsic scatter in the relation as a free parameter, allows the inclusion of non-detections in both Σgas and ΣSFR, and is free of the systematics involved in performing linear regressions over incomplete data in logarithmic space. After rejecting regions whose nebular spectrum is affected by the central active galactic nucleus in NGC 5194, we use the [S II]/Hα ratio to separate spectroscopically the contribution from the diffuse ionized gas (DIG) in the galaxy, which has a different temperature and ionization state from those of H II regions in the disk. The DIG only accounts for 11% of the total Hα luminosity integrated over the whole central region, but on local scales it can account for up to a 100% of the Hα emission, especially in the inter-arm regions. After removing the DIG contribution from the Hα fluxes, we measure a slope N = 0.82 ± 0.05, and an intrinsic scatter epsilon = 0.43 ± 0.02 dex for the molecular gas SFL. We also measure a typical depletion timescale \\tau =\\Sigma _H\\,{\\mathsc{i}+H_2}/\\Sigma _{SFR} \\approx 2 Gyr, in good agreement with recent measurements by Bigiel et al. The atomic gas density shows no correlation with the SFR, and the total gas SFL in the sampled density range closely follows the molecular gas SFL. Integral field spectroscopy allows a much cleaner measurement of Hα emission line fluxes than narrow-band imaging, since it is free of the systematics introduced by continuum subtraction, underlying photospheric absorption, and contamination by the [N II] doublet. We assess the validity of different corrections usually applied in narrow-band measurements to overcome these issues and find that while systematics are introduced by these corrections, they are only dominant in the low surface brightness regime. The disagreement with the previous measurement of a super-linear molecular SFL by Kennicutt et al. is most likely due to differences in the fitting method. Our results support the recent evidence for a low, and close to constant, star formation efficiency (SFE =τ-1) in the molecular component of the interstellar medium. The data show an excellent agreement with the recently proposed model of the SFL by Krumholz et al. The large intrinsic scatter observed may imply the existence of other parameters, beyond the availability of gas, which are important in setting the SFR.

Comparative Efficacy of Feline Leukemia Virus (FeLV) Inactivated Whole-Virus Vaccine and Canarypox Virus-Vectored Vaccine during Virulent FeLV Challenge and Immunosuppression.

PubMed

Patel, M; Carritt, K; Lane, J; Jayappa, H; Stahl, M; Bourgeois, M

2015-07-01

Four vaccines for feline leukemia virus (FeLV) are available in the United States. This study's purpose was to compare the efficacy of Nobivac feline 2-FeLV (an inactivated, adjuvanted whole-virus vaccine) and PureVax recombinant FeLV (a live, canarypox virus-vectored vaccine) following FeLV challenge. Cats were vaccinated at 9 and 12 weeks with Nobivac feline 2-FeLV (group A, n = 11) or PureVax recombinant FeLV (group B, n = 10). Group C (n = 11) comprised unvaccinated controls. At 3 months postvaccination, cats were immunosuppressed and challenged with FeLV-A/61E. The outcomes measured were persistent antigenemia at 12 weeks postchallenge (PC) and proviral DNA and viral RNA at 3 to 9 weeks PC. Persistent antigenemia was observed in 0 of 11 cats in group A, 5 of 10 cats in group B, and 10 of 11 cats in group C. Group A was significantly protected compared to those in groups B (P < 0.013) and C (P < 0.0001). No difference was found between groups B and C (P > 0.063). The preventable fraction was 100% for group A and 45% for group B. At 9 weeks PC, proviral DNA and viral RNA were detected 1 of 11 cats in group A, 6 of 10 cats in group B, and 9 of 11 cats in group C. Nucleic acid loads were significantly lower in group A than in group C (P < 0.01). Group A had significantly lower proviral DNA loads than group B at weeks 6 to 9 (P < 0.02). The viral RNA loads were significantly lower in group A than in group B at weeks 7 to 9 (P < 0.01). The results demonstrate that Nobivac feline 2-FeLV-vaccinated cats were fully protected against persistent antigenemia and had significantly smaller amounts of proviral DNA and plasma viral RNA loads than PureVax recombinant FeLV-vaccinated cats and unvaccinated controls. Copyright © 2015, Patel et al.

Phocine Distemper Virus in Seals, East Coast, United States, 2006

PubMed Central

Earle, J.A. Philip; Melia, Mary M.; Doherty, Nadine V.; Nielsen, Ole

2011-01-01

In 2006 and 2007, elevated numbers of deaths among seals, constituting an unusual mortality event, occurred off the coasts of Maine and Massachusetts, United States. We isolated a virus from seal tissue and confirmed it as phocine distemper virus (PDV). We compared the viral hemagglutinin, phosphoprotein, and fusion (F) and matrix (M) protein gene sequences with those of viruses from the 1988 and 2002 PDV epizootics. The virus showed highest similarity with a PDV 1988 Netherlands virus, which raises the possibility that the 2006 isolate from the United States might have emerged independently from 2002 PDVs and that multiple lineages of PDV might be circulating among enzootically infected North American seals. Evidence from comparison of sequences derived from different tissues suggested that mutations in the F and M genes occur in brain tissue that are not present in lung, liver, or blood, which suggests virus persistence in the central nervous system. PMID:21291591

Optical Design And Performance Of A Dual-Grating, Direct-Reading Spectrograph For Spectrochemical Analyses

NASA Astrophysics Data System (ADS)

Steinhaus, David W.; Kline, John V.; Bieniewski, Thomas M.; Dow, Grove S.; Apel, Charles T.

1980-11-01

An all-mirror optical system is used to direct the light from a variety of spectroscopic sources to two 2-m spectrographs that are placed on either side of a sturdy vertical mounting plate. The gratings were chosen so that the first spectrograph covers the ultraviolet spectral region, and the second spectrograph covers the ultraviolet, visible, and near-infrared regions. With the over 2.5 m of focal curves, each ultraviolet line is available at more than one place. Thus, problems with close lines can be overcome. The signals from a possible maximum of 256 photoelectric detectors go to a small computer for reading and calculation of the element abundances. To our knowledge, no other direct-reading spectrograph has more than about 100 fixed detectors. With an inductively-coupled-plasma source, our calibration curves, and detection limits, are similar to those of other workers using a direct-reading spectrograph.

High fractional exhaled nitric oxide and sputum eosinophils are associated with an increased risk of future virus-induced exacerbations: A prospective cohort study.

PubMed

Bjerregaard, A; Laing, I A; Backer, V; Sverrild, A; Khoo, S-K; Chidlow, G; Sikazwe, C; Smith, D W; Le Souëf, P; Porsbjerg, C

2017-08-01

The major trigger of asthma exacerbations is infection with a respiratory virus, most commonly rhinovirus. Type 2 inflammation is known to be associated with an increased risk of exacerbations in general. Whether type 2 inflammation at baseline increases the risk of future virus-induced exacerbations is unknown. To assess whether type 2 inflammation is associated with an increased risk of virus-induced exacerbations of asthma. Stable asthmatics had spirometry, skin prick test, measurement of FeNO and sputum induced for differential cell counts. Patients were followed up for 18 months, during which they were assessed at the research unit when they had symptoms of an exacerbation. Nasal swabs collected at these assessments underwent viral detection by PCR. A total of 81 asthma patients were recruited, of which 22 (27%) experienced an exacerbation during the follow-up period. Of these, 15 (68%) had a respiratory virus detected at exacerbation. Sputum eosinophils >1% at baseline increased the risk of having a subsequent virus-induced exacerbation (HR 7.6 95% CI: 1.6-35.2, P=.010) as did having FeNO >25 ppb (HR 3.4 95% CI: 1.1-10.4, P=.033). Established type 2 inflammation during stable disease is a risk factor for virus-induced exacerbations in a real-life setting. Measures of type 2 inflammation, such as sputum eosinophils and FeNO, could be included in the risk assessment of patients with asthma in future studies. © 2017 John Wiley & Sons Ltd.

West nile virus disease and other arboviral diseases - United States, 2011.

PubMed

2012-07-13

Arthropodborne viruses (arboviruses) are transmitted to humans primarily through the bites of infected mosquitoes and ticks. Symptomatic infections most often manifest as a systemic febrile illness and, less commonly, as neuroinvasive disease (e.g., meningitis, encephalitis, or acute flaccid paralysis). West Nile virus (WNV) is the leading cause of domestically acquired arboviral disease in the United States. However, several other arboviruses also cause seasonal outbreaks and sporadic cases. In 2011, CDC received reports of 871 cases of nationally notifiable arboviral diseases (excluding dengue); etiological agents included WNV (712 cases), La Crosse virus (LACV) (130), Powassan virus (POWV) (16), St. Louis encephalitis virus (SLEV) (six), Eastern equine encephalitis virus (EEEV) (four), and Jamestown Canyon virus (JCV) (three). Of these, 624 (72%) were classified as neuroinvasive disease, for a national incidence of 0.20 per 100,000 population. WNV and other arboviruses continue to cause focal outbreaks and severe illness in substantial numbers of persons in the United States.

Shoreside Boiler Demonstration of Fuel-Water Emulsions.

DTIC Science & Technology

1982-08-01

34 ( metal seat) P/N IE3980 46172 1 Valve plug 416SST P/N 1E3981 46172 2 Diaphram 302SST P/N 1E3992 36012 1 Gasket P/N 1E3993 04022 2 Gasket P/N 1P7880...each long term test. The analyses per- formed were semi-quantitative spectrographic analysis for metallic elements, quantitative analysis for carbon...analysis were to be compared with samples * of the parent metal to determine the extent of any corrosion and/or erosion during the Long Term Tests, it was

Genetic diversity of Sweet potato begomoviruses in the United States and identification of a natural recombinant between Sweet potato leaf curl virus and Sweet potato leaf curl Georgia virus

USDA-ARS?s Scientific Manuscript database

In the United States, two sweetpotato begomoviruses, Sweet potato leaf curl virus (SPLCV) and Sweet potato leaf curl Georgia virus (SPLCGV) were previously identified in Louisiana. In recent years, at least seven additional sweetpotato begomoviruses have been identified in other parts of the world....

Human infections with influenza A(H3N2) variant virus in the United States, 2011-2012

USDA-ARS?s Scientific Manuscript database

BACKGROUND. During August 2011-April 2012, 13 human infections with influenza A(H3N2) variant (H3N2v) virus were identified in the United States; 8 occurred in the prior 2 years. This virus differs from previous variant influenza viruses in that it contains the matrix (M) gene from the Influenza A(H...

QUANTITATIVE ASPECTS OF THE RED BLOOD CELL AGGLUTINATION TEST FOR INFLUENZA VIRUS

PubMed Central

Miller, Gail Lorenz; Stanley, W. M.

1944-01-01

A detailed study has been made of the nature of the variables inherent in the chicken red cell agglutination test for influenza virus in an effort to obtain a method of measurement of biological activity of sufficient accuracy that it might be employed as a reliable index of chemical purity of preparations of the virus. It was found that the temperature at which the test is conducted has a marked effect on the titer, whereas within the range of pH 6–8 the pH has a negligible effect. It was also found that a variation in results may be encountered due to a variation in the specific behavior of red cells from different chickens and to an instability of the red cells themselves. Preparations of purified influenza virus held at 4°C., on the other hand, were found to be stable with respect to chicken red cell agglutinating activity for several months. This fact, together with the fact that in duplicate measurements upon different samples the accuracy was such that the chances were 19 out of 20 that differences of 8.4 per cent in the mean end points were significant, made it possible to establish a reproducible standard of CCA activity based on a unit weight of purified virus material. As a result, it was possible to devise a standardized procedure for carrying out with high accuracy quantitative measurements of influenza virus. PMID:19871362

Survey of Blood Collection Centers and Implementation of Guidance for Prevention of Transfusion-Transmitted Zika Virus Infection--Puerto Rico, 2016.

PubMed

Vasquez, Amber M; Sapiano, Mathew R P; Basavaraju, Sridhar V; Kuehnert, Matthew J; Rivera-Garcia, Brenda

2016-04-15

Since November 2015, Puerto Rico has reported active mosquito-borne transmission of Zika virus. Because of the potential for Zika virus to be transmitted through transfusion of blood components, and because a high percentage of persons infected with Zika virus are asymptomatic, the Food and Drug Administration (FDA) recommended that blood collections cease in areas of the United States affected by active vector-borne transmission of Zika virus until laboratory screening of blood donations or pathogen reduction technology (PRT) for treatment of blood components can be implemented. To inform efforts to maintain the safety and availability of the blood supply in Puerto Rico, CDC, in collaboration with the Puerto Rico Department of Health, conducted a rapid assessment of blood collection and use on the island. A total of 139,369 allogeneic red blood cell (RBC) units, 45,243 platelet units, and 56,466 plasma units were collected in or imported to Puerto Rico during 2015, and 135,966 allogeneic RBC units, 13,526 therapeutic platelet units, and 25,775 plasma units were transfused. Because of the potential for local Zika virus transmission in areas with a competent mosquito vector, other areas of the United States should develop plans to ensure local blood safety and adequacy. Blood collection organizations and public health agencies should collaborate to maintain the safety and availability of local blood supplies in accordance with FDA guidance.

The MEDIDO Survey: Dark Matter in Low Dispersion Stellar Systems

NASA Astrophysics Data System (ADS)

Noyola, Eva; Bustamante, Maria Jose

2017-06-01

We will present preliminary results of the Medido Survey. The Survey focuses on dwarf galaxies of various types, as well as Milky Way globular clusters. We have been gathering data at the McDonald Observatory using the VIRUS-W spectrograph, which is capable of resolving velocity dispersions slightly above 10 km/s. For the galaxies, our focus is to improve kinematics in the central regions in order to tackle the cusp/core discrepancy between observations and models. In the case of the globular clusters, we map kinematics out to about 2 half-light radii with the goal of testing if any dark matter content can be detected or if dark matter can be confidently ruled out for these systems.

The Dark Matter Halo Profile Of NGC 2976 Via Stellar Kinematics

NASA Astrophysics Data System (ADS)

Adams, Joshua J.; Gebhardt, K.; Hill, G. J.; van den Bosch, R. C. E.; Blanc, G. A.

2011-01-01

The observations of kinematics in low surface brightness (LSB) and dwarf late type galaxies have stubbornly resisted giving clear evidence for the cuspy Navarro-Frenk-White (NFW) dark matter (DM) halo profiles that simulations with ΛCDM inputs predict. Instead, most LSBs and late type dwarfs suggest cored DM halos or the observations are not yet constraining enough to rule out cusps. One viable theory to explain cored DM halos relies on the gravitational perturbation of a growing baryonic disk that is then rapidly removed causing the halo to expand to a cored equilibrium. Weakly self-interacting dark matter has also been invoked to explain cored DM halos. This problem may loom large over small galaxy formation and growth. However, different measurements can be taken to further test the apparent problem. Most previous data have relied on HI or Hα as kinematic tracers. A small number of works have studied the problem with longslit stellar kinematics. Ideally, the advantages of 2D spectroscopic coverage and a collisionless kinematic tracer would be combined. So far, NGC 2976 has made one of the cleanest cases for a cored DM halo via integral field spectroscopy in Hα. We here report on observations of NGC 2976 with the large field-of-view fiber-fed Visible Integral field Replicable Unit Spectrograph Prototype (VIRUS-P) at R=3200 to concurrently measure the gaseous and stellar kinematics and probe the DM halo. We find that the gas and stellar kinematics disagree both in the magnitude of their second velocity moments and their detailed profiles. We unexpectedly find emission features in one of NGC 2976's two large star-forming regions which may be indicative of carbon-rich Wolf-Rayet stars. A putative bar further complicates the use of gaseous tracers. We solve the Jeans equations with stellar kinematics to reevaluate the DM profile in this exemplar galaxy of the core-cusp problem.

Clinical characteristics and outcome of respiratory syncytial virus infection among adults hospitalized with influenza-like illness in France.

PubMed

Loubet, P; Lenzi, N; Valette, M; Foulongne, V; Krivine, A; Houhou, N; Lagathu, G; Rogez, S; Alain, S; Duval, X; Galtier, F; Postil, D; Tattevin, P; Vanhems, P; Carrat, F; Lina, B; Launay, O

2017-04-01

The aim of this study was to analyse characteristics and outcome of respiratory syncytial virus (RSV) infection in adults hospitalized with influenza-like illness (ILI). Patients hospitalized with ILI were included in this prospective, multicentre study carried out in six French hospitals during three consecutive influenza seasons (2012-2015). RSV and other respiratory viruses were detected by multiplex PCR in nasopharyngeal swabs. Risk factors for RSV infection were identified by backward stepwise logistic regression analysis. A total of 1452 patients hospitalized with ILI were included, of whom 59% (861/1452) were >65 years and 83% (1211/1452) had underlying chronic illnesses. RSV was detected in 4% (59/1452), and influenza virus in 39% (566/1452). Risk factors for RSV infection were cancer (adjusted OR 2.1, 95% CI 1.1-4.1, p 0.04), and immunosuppressive treatment (adjusted OR 2.0, 95% CI 1.1-3.8, p 0.03). Patients with RSV had a median length of stay of 9 days (6-25), and 57% of them (30/53) had complications, including pneumonia (23/53, 44%) and respiratory failure (15/53, 28%). Fifteen per cent (8/53) were admitted to an intensive care unit, and the in-hospital mortality rate was 8% (4/53). Pneumonia was more likely to occur in patients with RSV than in patients with RSV-negative ILI (44% (23/53) versus 26% (362/1393), p 0.006) or with influenza virus infection (44% versus 28% (157/560), p 0.02). RSV is an infrequent cause of ILI during periods of influenza virus circulation but can cause severe complications in hospitalized adults. Risk factors for RSV detection in adults hospitalized with ILI include cancer and immunosuppressive treatment. Specific immunization and antiviral therapy might benefit patients at risk. Copyright © 2016 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.

[THE USE OF THE MODEL MOUSE ICR--VARIOLA VIRUS FOR EVALUATION OF ANTIVIRAL DRUG EFFICACY].

PubMed

Titova, K A; Sergeev, Al A; Kabanov, A S; Bulychev, L E; Sergeev, Ar A; Galakhova, D O; Shishkina, L N; Zamedyanskaya, A S; Nesterov, A E; Glotov, A G; Taranov, O S; Omigov, V V; Agafonov, A P; Sergeev, A N

2016-01-01

Mice of the ICR outbred population were infected intranasally (i/n) with the variola virus (VARV, strain Ind-3a). Clinical signs of the disease did not appear even at the maximum possible dose of the virus 5.2 lg PFU/head (plaque-forming units per head). In this case, 50% infective dose (ID50) of VARV estimated by the presence or absence of the virus in the lungs three days after infection (p.i.) was equal to 2.7 ± 0.4 lg PFU/head. Taking into account the 10% application of the virus in the lungs during the intranasal infection of the mice, it was adequate to 1.7 lg PFU/lungs. This indicates a high infectivity of the VARV for mice comparable to its infectivity for humans. After the i/n infection of mice with the VARV at a dose 30 ID50/ head the highest concentration of the virus detected in the lungs (4.9 ± 0.0 lg PFU/ml of homogenate) and in nasal cavity tissues (4.8 ± 0.0 lg PFU/ml) were observed. The pathomorphological changes in the respiratory organs of the mice infected with the VARV appeared at 3-5 days p.i., and the VARV reproduction noted in the epithelial cells and macrophages were noticed. When the preparations ST-246 and NIOCH-14 were administered orally at a dose of 60 μg/g of mouse weight up to one day before infection, after 2 hours, 1 and 2 days p.i., the VARV reproduction in the lungs after 3 days p.i. decreased by an order of magnitude. Thus, outbred ICR mice infected with the VARV can be used as a laboratory model of the smallpox when evaluating the therapeutic and prophylactic efficacy of the antismallpox drugs.

The New Instrument Suite of the TSU/Fairborn 2m Automatic Spectroscopic Telescope

NASA Astrophysics Data System (ADS)

Muterspaugh, Matthew W.; Maxwell, T.; Williamson, M. W.; Fekel, F. C.; Ge, J.; Kelly, J.; Ghasempour, A.; Powell, S.; Zhao, B.; Varosi, F.; Schofield, S.; Liu, J.; Warner, C.; Jakeman, H.; Avner, L.; Swihart, S.; Harrison, C.; Fishler, D.

2014-01-01

Tied with the Liverpool Telescope as the world's largest fully robotic optical research telescope, Tennessee State University's (TSU) 2m Automatic Spectroscopic Telescope (AST) has recently been upgraded to improve performance and increase versatility by supporting multiple instruments. Its second-generation instrument head enables us to rapidly switch between any of up to twelve fibers optics, each of which can supply light to a different instrument. In 2013 construction was completed on a new temperature-controlled guest instrument building, and two new high resolution spectrographs were commissioned. The current set of instrumentation includes (1) the telescope's original R=30,000 echelle spectrograph (0.38--0.83 microns simultaneous), (2) a single order R=7,000 spectrograph centered at Ca H&K features, (3) a single-mode-fiber fed miniature echelle spectrograph (R=100,000; 0.48--0.62 microns simultaneous), (4) the University of Florida's EXPERT-3 spectrograph (R=100,000; 0.38--0.9 microns simultaneous; vacuum and temperature controlled) and (5) the University of Florida's FIRST spectrograph (R=70,000$; 0.8--1.35 or 1.4--1.8 microns simultaneous; vacuum and temperature controlled). Future instruments include the Externally Dispersed Interferometry (EDI) Testbed, a combination low resolution dispersed spectrograph and Fourier Transform Spectrograph. We welcome inquiries from the community in regards to observing access and/or proposals for future guest instruments.

Design and realization of the real-time spectrograph controller for LAMOST based on FPGA

NASA Astrophysics Data System (ADS)

Wang, Jianing; Wu, Liyan; Zeng, Yizhong; Dai, Songxin; Hu, Zhongwen; Zhu, Yongtian; Wang, Lei; Wu, Zhen; Chen, Yi

2008-08-01

A large Schmitt reflector telescope, Large Sky Area Multi-Object Fiber Spectroscopic Telescope(LAMOST), is being built in China, which has effective aperture of 4 meters and can observe the spectra of as many as 4000 objects simultaneously. To fit such a large amount of observational objects, the dispersion part is composed of a set of 16 multipurpose fiber-fed double-beam Schmidt spectrographs, of which each has about ten of moveable components realtimely accommodated and manipulated by a controller. An industrial Ethernet network connects those 16 spectrograph controllers. The light from stars is fed to the entrance slits of the spectrographs with optical fibers. In this paper, we mainly introduce the design and realization of our real-time controller for the spectrograph, our design using the technique of System On Programmable Chip (SOPC) based on Field Programmable Gate Array (FPGA) and then realizing the control of the spectrographs through NIOSII Soft Core Embedded Processor. We seal the stepper motor controller as intellectual property (IP) cores and reuse it, greatly simplifying the design process and then shortening the development time. Under the embedded operating system μC/OS-II, a multi-tasks control program has been well written to realize the real-time control of the moveable parts of the spectrographs. At present, a number of such controllers have been applied in the spectrograph of LAMOST.

New infrared spectrograph for the investigation of the mesopause region

NASA Astrophysics Data System (ADS)

Koltovskoi, I. I.; Ammosov, P. P.; Gavrilyeva, G. A.; Ammosova, A. M.; Sivseva, V. I.

2017-11-01

A new infrared spectrograph with high temporal resolution for observation of OH band (3-1) emission dynamics is described. For the automated work of the spectrograph, special software was created. Remote control over the device is also configured.

Laboratory investigations of African Pouched Rats (Cricetomys gambianus) as a potential reservoir host species for Monkeypox Virus

USGS Publications Warehouse

Hutson, Christina L.; Nakazawa, Yoshinori J.; Self, Joshua; Olson, Victoria A.; Regnery, Russell L.; Braden, Zachary; Weiss, Sonja; Malekani, Jean; Jackson, Eddie; Tate, Mallory; Karem, Kevin L.; Rocke, Tonie E.; Osorio, Jorge E.; Damon, Inger K.; Carroll, Darin S.

2015-01-01

Monkeypox is a zoonotic disease endemic to central and western Africa, where it is a major public health concern. Although Monkeypox virus (MPXV) and monkeypox disease in humans have been well characterized, little is known about its natural history, or its maintenance in animal populations of sylvatic reservoir(s). In 2003, several species of rodents imported from Ghana were involved in a monkeypox outbreak in the United States with individuals of three African rodent genera (Cricetomys, Graphiurus, Funisciurus) shown to be infected with MPXV. Here, we examine the course of MPXV infection in Cricetomys gambianus (pouched Gambian rats) and this rodent species’ competence as a host for the virus. We obtained ten Gambian rats from an introduced colony in Grassy Key, Florida and infected eight of these via scarification with a challenge dose of 4X104 plaque forming units (pfu) from either of the two primary clades of MPXV: Congo Basin (C-MPXV: n = 4) or West African (W-MPXV: n = 4); an additional 2 animals served as PBS controls. Viral shedding and the effect of infection on activity and physiological aspects of the animals were measured. MPXV challenged animals had significantly higher core body temperatures, reduced activity and increased weight loss than PBS controls. Viable virus was found in samples taken from animals in both experimental groups (C-MPXV and W-MPXV) between 3 and 27 days post infection (p.i.) (up to 1X108pfu/ml), with viral DNA found until day 56 p.i. The results from this work show that Cricetomys gambianus (and by inference, probably the closely related species, Cricetomys emini) can be infected with MPXV and shed viable virus particles; thus suggesting that these animals may be involved in the maintenance of MPXV in wildlife mammalian populations. More research is needed to elucidate the epidemiology of MPXV and the role of Gambian rats and other species.

Culicoides variipennis and bluetongue-virus epidemiology in the United States.

PubMed

Tabachnick, W J

1996-01-01

The bluetongue viruses are transmitted to ruminants in North America by Culicoides variipennis. US annual losses of approximately $125 million are due to restrictions on the movement of livestock and germplasm to bluetongue-free countries. Bluetongue is the most economically important arthropod-borne animal disease in the United States. Bluetongue is absent in the northeastern United States because of the inefficient vector ability there of C. variipennis for bluetongue. The vector of bluetongue virus elsewhere in the United States is C. variipennis sonorensis. The three C. variipennis subspecies differ in vector competence for bluetongue virus in the laboratory. Understanding C. variipennis genetic variation controlling bluetongue transmission will help identify geographic regions at risk for bluetongue and provide opportunities to prevent virus transmission. Information on C. variipennis and bluetongue epidemiology will improve trade and provide information to protect US livestock from domestic and foreign arthropod-borne pathogens.

Detection of Crimean-Congo hemorrhagic fever virus-specific IgG antibodies in ruminants residing in Central and Western Macedonia, Greece.

PubMed

Schuster, Isolde; Chaintoutis, Serafeim C; Dovas, Chrysostomos I; Groschup, Martin H; Mertens, Marc

2017-06-01

Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne virus which causes lethal hemorrhagic fever in humans. Although, several reports regarding CCHFV antibody prevalence in humans exist in Greece, information about the current distribution is limited. The aim of the present study is to investigate the prevalence of CCHFV-specific IgG antibodies in cattle and sheep in Macedonia-Greece. The samplings were performed during spring 2013, in 5 regional units of Central Macedonia (Chalkidiki, Imathia, Kilkis, Pella and Thessaloniki) and in the 4 regional units of Western Macedonia (Grevena, Florina, Kastoria and Kozani). Specifically, sera from 538 cattle and 81 sheep underwent testing against CCHFV-specific IgG antibodies. Antiviral immune responses were observed in 31 cattle (6%, 95% CI: 4-8%) and in one sheep (1%, 95% CI: 0-8%). The total seroprevalence in the cattle sampled in Central Macedonia was 7% (28 out of 396, 95% CI: 5-10%). Within Central Macedonia, the highest seroprevalence was detected in Chalkidiki (38%, 95% CI: 23-56%), which was significantly higher (p<0.01) compared to the overall seroprevalence detected in cattle. In Western Macedonia, the total seroprevalence in cattle was 2% (3 out of 142, 95% CI: 1-7%). The 3 seropositive cattle were residing in the regional unit of Grevena. The one IgG-positive sheep serum was obtained from an animal residing in Thessaloniki. In this regional unit, the prevalence in sheep (2%, 95% CI: 0-10%) was much lower compared to the prevalence in cattle (12%, 95% CI: 6-22%), but significance was not achieved (p=0.03). The here presented seroepidemiological study demonstrates high transmission risk to human in specific geographical areas, which should be communicated to national and local public health authorities, so as to intensify preventive measures for public health protection. Copyright © 2017. Published by Elsevier GmbH.

Lime application to manure as a management strategy for Porcine Epidemic Diarrhea virus

USDA-ARS?s Scientific Manuscript database

Arrival of Porcine Epidemic Diarrhea virus (PEDv) in 2013 resulted in billions of dollars in losses in the United States. Currently, increased on-farm biosecurity and mortality management help limit the virus spread. Managing PEDv infections requires mandatory reporting to the United States Depart...

Physical properties of PNe: what IFU spectrographs can do?

NASA Astrophysics Data System (ADS)

Costa, R.; Lago, P. J. A.; Faes, D., M.

2014-04-01

Structure, kinematics and physical parameters of planetary nebulae are related to their progenitor stars. A better understanding of these properties is essential to improve the knowledge of the late stages of evolution of intermediate-mass stars, as well as to better understand the chemical enrichment mechanisms that feed the interstellar medium with the nucleosynthesis yields from such stars. Integral Field Unit (IFU) spectrographs can provide valuable information from these objects, mapping such properties point-to-point over the projected nebulae. In this communication we present the results of a survey of physical properties for southern PNe. We have used IFU spectroscopy in order to derive the angular distribution of electron densities and ionic abundances, and also to map the ionization profiles. The aim is to characterize their physical properties and structures, and results can be used in morpho-kinematical models (such as SHAPE) or in photoionization models (such as CLOUDY) to describe in detail the 3D structure and evolution of these objects.

KSC-08pd2326

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, workers prepare to attach an overhead crane to the Cosmic Origins Spectrograph, or COS. The COS will be lifted and moved to a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2327

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, workers attach an overhead crane to the Cosmic Origins Spectrograph, or COS. The COS is being lifted and moved to a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2330

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lifts the Cosmic Origins Spectrograph, or COS. The COS is being lifted and moved to a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2331

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lifts the Cosmic Origins Spectrograph, or COS. The COS is being lifted and moved to a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2328

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lifts the Cosmic Origins Spectrograph, or COS. The COS is being lifted and moved to a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

KSC-08pd2329

NASA Image and Video Library

2008-08-07

CAPE CANAVERAL, Fla. – In the clean room of the Payload Hazardous Processing Facility at NASA's Kennedy Space Center, an overhead crane lifts the Cosmic Origins Spectrograph, or COS. The COS is being lifted and moved to a protective enclosure on the Orbital Replacement Unit Carrier, part of the payload for the fifth and final Hubble servicing mission, STS-125. Other payloads include the Flight Support System, the Super Lightweight Interchangeable Carrier and the Multi-Use Lightweight Equipment, or MULE, carrier. COS will be the most sensitive ultraviolet spectrograph ever flown on Hubble and will probe the "cosmic web" - the large-scale structure of the universe whose form is determined by the gravity of dark matter and is traced by galaxies and intergalactic gas. The COS far-ultraviolet channel has a sensitivity 30 times greater than that of previous spectroscopic instruments for the detection of extremely low light levels. Launch of Atlantis on the STS-125 mission is targeted for Oct. 8. Photo credit: NASA/Kim Shiflett

Revised and extended analysis of Br IV

NASA Astrophysics Data System (ADS)

Riyaz, A.; Rahimullah, K.; Tauheed, A.

2014-01-01

The spectrum of three-times ionized bromine Br IV has been studied in the 319-2350 Å wavelength region. The spectrum was recorded on a 3-m normal incidence vacuum spectrograph at the St. Francis Xavier University, Antigonish (Canada) and 6.65-m grazing incidence spectrograph at the Zeeman laboratory (Amsterdam). The light sources used were a triggered spark and sliding spark, respectively. The ground configuration of Br IV 3d104s24p2, the excited configurations 3d104s4p3+3d104s24p (4d+5d+6d+5s+6s+7s) in the odd parity system and 3d104s24p (5p+4f+5f)+3d104s4p2 (4d+5s)+3d104p4 in the even parity system have been studied. Relativistic Hartree-Fock (HFR) and least squares fitted (LSF) parametric calculations were used to interpret the observed spectrum. 120 Levels of Br IV have now been established, 58 being new. Among 424 spectral lines, 277 are newly classified. The levels 4s4p35S2, 4s24p4d 3F4 and 4p5p (3P0, 1, 3D1, 2, 3S1) are revised. We estimate the accuracy of our measured wavelength for sharp and unblended lines to be ±0.005 Å. The ionization limit is determined as 385,390±100 cm-1 (47.782±0.012 eV).

Design and Construction of VUES: The Vilnius University Echelle Spectrograph

NASA Astrophysics Data System (ADS)

Jurgenson, Colby; Fischer, Debra; McCracken, Tyler; Sawyer, David; Giguere, Matt; Szymkowiak, Andrew; Santoro, Fernando; Muller, Gary

2016-03-01

In February 2014, the Yale Exoplanet Laboratory was commissioned to design, build, and deliver a high resolution (R=60,000) spectrograph for the 1.65m telescope at the Molėtai Astronomical Observatory. The observatory is operated by the Institute of Theoretical Physics and Astronomy at Vilnius University. The Vilnius University Echelle Spectrograph (VUES) is a white-pupil design that is fed via an octagonal fiber from the telescope and has an operational bandpass from 400nm to 880nm. VUES incorporates a novel modular optomechanical design that allows for quick assembly and alignment on commercial optical tables. This approach allowed the spectrograph to be assembled and commissioned at Yale using lab optical tables and then reassembled at the observatory on a different optical table with excellent repeatability. The assembly and alignment process for the spectrograph was reduced to a few days, allowing the spectrograph to be completely disassembled for shipment to Lithuania, and then installed at the observatory during a 10-day period in June of 2015.

Impacts of West Nile Virus on wildlife

USGS Publications Warehouse

Saito, E.K.; Wild, M.A.

2004-01-01

The recent epidemic of West Nile virus in the United States proved to be unexpectedly active and was the largest epidemic of the virus ever recorded. Much remains to be discovered about the ecology and epidemiology of West Nile virus in the United States, including which species are important in maintaining the virus in nature, why some species are more susceptible to lethal infection, and what environmental factors are important in predicting future epidemics. These factors will likely vary regionally, depending on local ecological characteristics. Until scientists better understand the virus and factors influencing its activity, predicting its effects for future seasons is impossible. However, experts are certain about one thing: West Nile virus is here to stay.

The 3.2 Angstrom Resolution Structure of the Polymorphic Cowpea Chlorotic Mottle Virus Ribonucleoprotein Particle

NASA Astrophysics Data System (ADS)

Speir, Jeffrey Alan

Structural studies of the polymorphic cowpea chlorotic mottle virus have resulted in high resolution structures for two distinct icosahedral ribonucleoprotein particle conformations dependent upon whether acidic or basic pH conditions prevail. CCMV is stable below pH 6.5, however metal-free particles maintain a 10% increase in hydrodynamic volume at pH >=q 7.5. Identification of this swollen' form of CCMV, which can easily be disrupted with 1M NaCl, led to the first reassembly of an icosahedral virus in vitro from purified viral protein and RNA to form infectious particles, and its assembly has been the subject of biochemical and biophysical investigations for over twenty-five years. Under well defined conditions of pH, ionic strength and divalent metal ion concentration, CCMV capsid protein or capsid protein and RNA will reassemble to form icosahedral particles of various sizes, sheets, tubes, rosettes, and a variety of laminar structures which resemble virion structures from non-related virus families. Analysis of native particles at 3.2A resolution and swollen particles at 28A resolution has suggested that the chemical basis for the formation of polymorphic icosahedral and anisometric structures is: (i) hexamers formed of beta-barrel subunits stabilized by an unusual hexameric parallel beta structure made up of their N-termini, (ii) the location of protein-RNA interactions, (iii) divalent metal cation binding sites that regulate quasi-symmetrical subunit associations, (iv) charge repulsion across the same interfaces when lacking divalent metal ions at basic pH, which induces the formation of sixty 20A diameter portals for RNA release, and (v) a novel, C-terminal-based, subunit dimer assembly unit. The use of C- and N-terminal arms in CCMV has not been observed in other icosahedral RNA virus structures determined at near atomic resolution, however, their detailed interactions and roles in stabilizing the quaternary organization of CCMV are related to that found in the atomic structures of the DNA tumor papovaviruses (SV40 and polyoma). The swollen structure is closely similar to the expanded form of tomato bushy stunt virus (TBSV) previously determined at 8A resolution by X-ray crystallography.

A serosurvey for ruminant pestivirus exposure conducted using cattle sera collected for brucellosis surveillance in the United States

USDA-ARS?s Scientific Manuscript database

Four species of ruminant pestivirus are currently circulating in the United States (U.S.): Bovine viral diarrhea virus (BVDV) types 1 and 2 (predominant host cattle), Border disease virus (BDV) (predominant host sheep) and the Pronghorn virus (sporadically detected in wild ruminants). A third bovin...

An overview of instrumentation for the Large Binocular Telescope

NASA Astrophysics Data System (ADS)

Wagner, R. Mark

2012-09-01

An overview of instrumentation for the Large Binocular Telescope (LBT) is presented. Optical instrumentation includes the Large Binocular Camera (LBC), a pair of wide-field (27' x 27') mosaic CCD imagers at the prime focus, and the Multi-Object Double Spectrograph (MODS), a pair of dual-beam blue-red optimized long-slit spectrographs mounted at the left and right direct F/15 Gregorian foci incorporating multiple slit masks for multi-object spectroscopy over a 6' field and spectral resolutions of up to 2000. Infrared instrumentation includes the LBT Near-IR Spectroscopic Utility with Camera and Integral Field Unit for Extragalactic Research (LUCI), a modular near-infrared (0.9-2.5 μm) imager and spectrograph pair mounted at the left and right front bent F/15 Gregorian foci and designed for seeing-limited (FOV: 4' × 4') imaging, long-slit spectroscopy, and multiobject spectroscopy utilizing cooled slit masks and diffraction limited (FOV: 0'.5 × 0'.5) imaging and long-slit spectroscopy. Strategic instruments under development that can utilize the full 23-m baseline of the LBT include an interferometric cryogenic beam combiner with near-infrared and thermal-infrared instruments for Fizeau imaging and nulling interferometry (LBTI) and an optical bench near-infrared beam combiner utilizing multi-conjugate adaptive optics for high angular resolution and sensitivity (LINC-NIRVANA). LBTI is currently undergoing commissioning on the LBT and utilizing the installed adaptive secondary mirrors in both single- sided and two-sided beam combination modes. In addition, a fiber-fed bench spectrograph (PEPSI) capable of ultra high resolution spectroscopy and spectropolarimetry (R = 40,000-300,000) will be available as a principal investigator instrument. Over the past four years the LBC pair, LUCI1, and MODS1 have been commissioned and are now scheduled for routine partner science observations. The delivery of both LUCI2 and MODS2 is anticipated before the end of 2012. The availability of all these instruments mounted simultaneously on the LBT permits unique science, flexible scheduling, and improved operational support.

Vital Signs: Preparing for Local Mosquito-Borne Transmission of Zika Virus--United States, 2016.

PubMed

2016-04-08

Widespread Zika virus transmission in the Region of the Americas since 2015 has heightened the urgency of preparing for the possibility of expansion of mosquito-borne transmission of Zika virus during the 2016 mosquito season. CDC and other U.S. government agencies have been working with state and local government partners on prevention and early detection of Zika virus infection and will increase these activities during April as part of their preparation for the anticipated emergence of mosquito-borne transmission of Zika virus in the continental United States.

A Novel Ilarvirus Is Associated with Privet Necrotic Ringspot Disease in the Southern United States.

PubMed

Aboughanem-Sabanadzovic, Nina; Tzanetakis, Ioannis E; Lawrence, Amanda; Stephenson, Ronald C; Sabanadzovic, Sead

2016-01-01

Necrotic ringspot disease (NRSD) is a graft-transmissible disorder of privet (synonym ligustrum), originally reported from Florida and Louisiana more than 50 years ago. In this communication we report an isometric virus isolated from Japanese privet (Ligustrum japonicum) collected in the southern United States displaying symptoms resembling those of NRSD. In mechanical transmission tests, the virus induced systemic infections in several herbaceous hosts. Double-stranded RNA analysis showed a pattern resembling replicative forms of members of the family Bromoviridae. The genome organization along with phylogenetic analyses and serological tests revealed that the virus belongs to subgroup 1 of the genus Ilarvirus. Pairwise comparisons with recognized ilarviruses indicated that the virus is a distinct, and as yet, undescribed member in the taxon, for which we propose the name Privet ringspot virus (PrRSV). Furthermore, the near-perfect association of PrRSV infections with symptoms, and apparent absence of any other virus(es) in studied samples, strongly suggest an important role of this virus in the etiology of NRSD of privet in the southeastern United States.

Design, motivation, and on-sky tests of an efficient fiber coupling unit for 1-meter class telescopes

NASA Astrophysics Data System (ADS)

Bottom, Michael; Muirhead, Philip S.; Swift, Jonathan J.; Zhao, Ming; Gardner, Paul; Plavchan, Peter P.; Riddle, Reed L.; Herzig, Erich; Johnson, John A.; Wright, Jason T.; McCrady, Nate; Wittenmyer, Robert A.

2014-08-01

We present the science motivation, design, and on-sky test data of a high-throughput fiber coupling unit suitable for automated 1-meter class telescopes. The optical and mechanical design of the fiber coupling is detailed and we describe a flexible controller software designed specifically for this unit. The system performance is characterized with a set of numerical simulations, and we present on-sky results that validate the performance of the controller and the expected throughput of the fiber coupling. This unit was designed specifically for the MINERVA array, a robotic observatory consisting of multiple 0.7 m telescopes linked to a single high-resolution stabilized spectrograph for the purpose of exoplanet discovery using high-cadence radial velocimetry. However, this unit could easily be used for general astronomical purposes requiring fiber coupling or precise guiding.

Knowledge, attitudes and barriers regarding vaccination against hepatitis A and B in patients with chronic hepatitis C virus infection: a survey of family medicine and internal medicine physicians in the United States.

PubMed

Tenner, C T; Herzog, K; Chaudhari, S; Bini, E J; Weinshel, E H

2012-10-01

Although vaccination against hepatitis A virus (HAV) and hepatitis B virus (HBV) is recommended for all patients with chronic hepatitis C virus (HCV) infection, physician vaccination practices are suboptimal. Since training for family medicine (FM) and internal medicine (IM) physicians differ, we hypothesised that there are differences in knowledge, attitudes and barriers regarding vaccination against HAV and HBV in patients with chronic HCV between these two groups. A two-page questionnaire was mailed to 3000 primary care (FM and IM) physicians randomly selected from the AMA Physician Masterfile in 2005. The survey included questions about physician demographics, knowledge and attitudes regarding vaccination. Among the 3000 physicians surveyed, 1209 (42.2%) returned completed surveys. There were no differences between respondents and non-respondents with regard to age, gender, geographic location or specialty. More FM than IM physicians stated that HCV+ patients should not be vaccinated against HAV (23.7% vs. 11.8%, p < 0.001) or HBV (21.9% vs. 10.6%, p < 0.001). FM physicians were also less likely than IM physicians to usually/always test HCV+ patients for immunity against HAV (33.9% vs. 48.6%, p < 0.001) or against HBV (50.8% vs. 68.0%, p < 0.001). There were numerous barriers to HAV and HBV vaccination identified. The median number of barriers was 3 for FM physicians and 2 for IM physicians (p < 0.001). Despite recommendations to vaccinate against HAV and HBV in patients with chronic HCV infection, physicians often do not test or vaccinate susceptible individuals. Interventions are needed to overcome the barriers identified and improve vaccination rates. © 2012 Blackwell Publishing Ltd.

Mouse interferons: production by Ehrlich ascites tumour cells infected with Newcastle disease virus and its enhancement by theophylline.

PubMed

Slattery, E; Taira, H; Broeze, R; Lengyel, P

1980-07-01

Conditions are described for the production of 0.3 to 0.7 NIH mouse reference standard units of interferon per cell from Ehrlich ascites tumour cells cultured as monolayers and induced by infection with Newcastle disease virus (NDV). Inclusion of theophylline (6 mM) in the medium increased the interferon yield three to four times. Cells infected with NDV started to lyse at about 15 p.i., but infected, theophylline-treated cells lysed only 24 p.i. Several other methylxanthines (e.g. theobromine, caffeine and isobutylmethylxanthine) when tested a concentrations similar to that of theophylline, did not boost interferon production. Dibutyryl cyclic AMP (10(-10) to 10(-2)M) did not substitute for theophylline in increasing interferon production, and, if used together with theophylline, did not cause further enhancement.

Vacuum Spectrograph for E-Beam Ablation Studies.

DTIC Science & Technology

1987-07-31

Washington, D. C. 20332 I. ISAIAS OP ISUNCISNGMPONSORING IN. OFFICE svm*OL 9. PROCUREMENT INSTRVMG14T IDENTIFICATION NdUMBERi ORGA1CNIZATION Ia ~b *Air...Unannounced [J Justification ’pig ~Distribution/______ AvAilability Codes Avnil andr/or Di pC a Figure 1. Photograph of the VM-510 and pumping station

Using classification and NDVI differencing methods for monitoring sparse vegetation coverage: a case study of saltcedar in Nevada, USA.

USDA-ARS?s Scientific Manuscript database

A change detection experiment for an invasive species, saltcedar, near Lovelock, Nevada, was conducted with multi-date Compact Airborne Spectrographic Imager (CASI) hyperspectral datasets. Classification and NDVI differencing change detection methods were tested, In the classification strategy, a p...

GNOSIS: a novel near-infrared OH suppression unit at the AAT

NASA Astrophysics Data System (ADS)

Trinh, C. Q.; Ellis, S. C.; Lawrence, J. S.; Horton, A. J.; Bland-Hawthorn, J.; Leon-Saval, S. G.; Bryant, J.; Case, S.; Colless, M.; Couch, W.; Freeman, K.; Gers, L.; Glazebrook, K.; Haynes, R.; Lee, S.; Löhmannsröben, H.-G.; Miziarski, S.; O'Byrne, J.; Rambold, W.; Roth, M. M.; Schmidt, B.; Shortridge, K.; Smedley, S.; Tinney, C. G.; Xavier, P.; Zheng, J.

2012-09-01

GNOSIS has provided the first on-telescope demonstration of a concept to utilize complex aperioidc fiber Bragg gratings to suppress the 103 brightest atmospheric hydroxyl emission doublets between 1.47-1.7 μm. The unit is designed to be used at the 3.9-meter Anglo-Australian Telescope (AAT) feeding the IRIS2 spectrograph. Unlike previous atmospheric suppression techniques GNOSIS suppresses the lines before dispersion. We present the results of laboratory and on-sky tests from instrument commissioning. These tests reveal excellent suppression performance by the gratings and high inter-notch throughput, which combine to produce high fidelity OH-free spectra.

The Ultraviolet Total Ozone Unit (TOU) IN-ORBIT PERFORMANCE AND CALIBRATION

NASA Astrophysics Data System (ADS)

Wang, Yongmei; Fu, Liping; Zhang, Zhongmou

The Ultraviolet Total Ozone Unit (TOU) was launched on 27 May 2008 on FY-3 meteorological satellite. The main purpose of TOU is to measure the incident solar radiation and backscattered ultraviolet radiance for retrieving daily global map of atmospheric ozone. TOU is a fixed grating and slit-array Ebert-Fastie grating spectrograph system. It has the multi-wavelengths detecting and two-dimensional scanning which enables global daily ground coverage. This paper discusses the recent working status of the instrument, including the sensitivity, measuring precision of solar irradiance, diffuser degradation and wavelength drift, and then presents the in-flight calibration and performance results.

Epidemiology of recurrent genital herpes simplex virus types 1 and 2

PubMed Central

Solomon, L; Cannon, M; Reyes, M; Graber, J; Wetherall, N; Reeves, W

2003-01-01

Methods: Participants were enrolled at clinics across the United States. Adults suspected of having active genital herpes were eligible. Lesions were cultured for HSV and typed. Data from 940 participants with recurrent culture positive HSV lesions were analysed. Pearson's χ2 and Fisher's exact tests, multivariate logistic regression models, and a stratified Cox proportional hazards model were used to compare epidemiological characteristics and lesion duration of HSV-1 and HSV-2. Results: HSV-1 was present in 4.2% of the recurrent HSV culture positive lesions. HSV-1 was most prevalent among whites (6.5%) and individuals with 0–2 recurrences in the previous year (9.1%) and, among men, in those with rectal/perirectal lesions (13.2%). Longer lesion duration was not significantly associated with virus type (hazard ratio (HR) 0.95, 95% confidence interval (CI) 0.65 to 1.38, p = 0.79), but was associated with male sex (HR 0.85, 95% CI 0.74 to 0.99, p = 0.04), and HIV seropositivity (HR 0.62, 95% CI 0.48 to 0.81, p<0.01). Conclusions: The authors found that, in the United States, recurrent genital HSV-1 is relatively rare in the STD and HIV clinic setting, especially among black people. Among men, rectal/perirectal recurrent lesions are more likely to be caused by HSV-1 than are penile lesions. In addition, lesion duration depends on sex and HIV status but not virus type. These findings shed new light on the type specific epidemiology of recurrent genital HSV, and suggest that type specific testing can inform the prognosis and management of genital herpes. PMID:14663120

Expression, purification and crystallization of two major envelope proteins from white spot syndrome virus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tang, Xuhua; Hew, Choy Leong, E-mail: dbshewcl@nus.edu.sg

2007-07-01

The crystallization of the N-terminal transmembrane region-truncated VP26 and VP28 of white spot syndrome virus is described. White spot syndrome virus (WSSV) is a major virulent pathogen known to infect penaeid shrimp and other crustaceans. VP26 and VP28, two major envelope proteins from WSSV, have been identified and overexpressed in Escherichia coli. In order to facilitate purification and crystallization, predicted N-terminal transmembrane regions of approximately 35 amino acids have been truncated from both VP26 and VP28. Truncated VP26 and VP28 and their corresponding SeMet-labelled proteins were purified and the SeMet proteins were crystallized by the hanging-drop vapour-diffusion method. Crystals ofmore » SeMet-labelled VP26 were obtained using a reservoir consisting of 0.1 M citric acid pH 3.5, 3.0 M sodium chloride and 1%(w/v) polyethylene glycol 3350, whereas SeMet VP28 was crystallized using a reservoir solution consisting of 25% polyethylene glycol 8000, 0.2 M calcium acetate, 0.1 M Na HEPES pH 7.5 and 1.5%(w/v) 1,2,3-heptanetriol. Crystals of SeMet-labelled VP26 diffract to 2.2 Å resolution and belong to space group R32, with unit-cell parameters a = b = 73.92, c = 199.31 Å. SeMet-labelled VP28 crystallizes in space group P2{sub 1}2{sub 1}2{sub 1}, with unit-cell parameters a = 105.33, b = 106.71, c = 200.37 Å, and diffracts to 2.0 Å resolution.« less

The matrix gene segment destabilizes the acid and thermal stability of the hemagglutinin of pandemic live attenuated influenza virus vaccines.

PubMed

O'Donnell, Christopher D; Vogel, Leatrice; Matsuoka, Yumiko; Jin, Hong; Subbarao, Kanta

2014-11-01

The threat of future influenza pandemics and their potential for rapid spread, morbidity, and mortality has led to the development of pandemic vaccines. We generated seven reassortant pandemic live attenuated influenza vaccines (pLAIVs) with the hemagglutinin (HA) and neuraminidase (NA) genes derived from animal influenza viruses on the backbone of the six internal protein gene segments of the temperature sensitive, cold-adapted (ca) A/Ann Arbor/60 (H2N2) virus (AA/60 ca) of the licensed seasonal LAIV. The pLAIV viruses were moderately to highly restricted in replication in seronegative adults; we sought to determine the biological basis for this restriction. Avian influenza viruses generally replicate at higher temperatures than human influenza viruses and, although they shared the same backbone, the pLAIV viruses had a lower shutoff temperature than seasonal LAIV viruses, suggesting that the HA and NA influence the degree of temperature sensitivity. The pH of HA activation of highly pathogenic avian influenza viruses was greater than human and low-pathogenicity avian influenza viruses, as reported by others. However, pLAIV viruses had a consistently higher pH of HA activation and reduced HA thermostability compared to the corresponding wild-type parental viruses. From studies with single-gene reassortant viruses bearing one gene segment from the AA/60 ca virus in recombinant H5N1 or pH1N1 viruses, we found that the lower HA thermal stability and increased pH of HA activation were associated with the AA/60 M gene. Together, the impaired HA acid and thermal stability and temperature sensitivity likely contributed to the restricted replication of the pLAIV viruses we observed in seronegative adults. There is increasing evidence that the HA stability of influenza viruses depends on the virus strain and host species and that HA stability can influence replication, virulence, and transmission of influenza A viruses in different species. We investigated the HA stability of pandemic live attenuated influenza vaccine (pLAIV) viruses and observed that the pLAIV viruses consistently had a less stable HA than the corresponding wild-type influenza viruses. The reduced HA stability and temperature sensitivity of the pLAIV viruses may account for their restricted replication in clinical trials. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

The Matrix Gene Segment Destabilizes the Acid and Thermal Stability of the Hemagglutinin of Pandemic Live Attenuated Influenza Virus Vaccines

PubMed Central

O'Donnell, Christopher D.; Vogel, Leatrice; Matsuoka, Yumiko; Jin, Hong

2014-01-01

ABSTRACT The threat of future influenza pandemics and their potential for rapid spread, morbidity, and mortality has led to the development of pandemic vaccines. We generated seven reassortant pandemic live attenuated influenza vaccines (pLAIVs) with the hemagglutinin (HA) and neuraminidase (NA) genes derived from animal influenza viruses on the backbone of the six internal protein gene segments of the temperature sensitive, cold-adapted (ca) A/Ann Arbor/60 (H2N2) virus (AA/60 ca) of the licensed seasonal LAIV. The pLAIV viruses were moderately to highly restricted in replication in seronegative adults; we sought to determine the biological basis for this restriction. Avian influenza viruses generally replicate at higher temperatures than human influenza viruses and, although they shared the same backbone, the pLAIV viruses had a lower shutoff temperature than seasonal LAIV viruses, suggesting that the HA and NA influence the degree of temperature sensitivity. The pH of HA activation of highly pathogenic avian influenza viruses was greater than human and low-pathogenicity avian influenza viruses, as reported by others. However, pLAIV viruses had a consistently higher pH of HA activation and reduced HA thermostability compared to the corresponding wild-type parental viruses. From studies with single-gene reassortant viruses bearing one gene segment from the AA/60 ca virus in recombinant H5N1 or pH1N1 viruses, we found that the lower HA thermal stability and increased pH of HA activation were associated with the AA/60 M gene. Together, the impaired HA acid and thermal stability and temperature sensitivity likely contributed to the restricted replication of the pLAIV viruses we observed in seronegative adults. IMPORTANCE There is increasing evidence that the HA stability of influenza viruses depends on the virus strain and host species and that HA stability can influence replication, virulence, and transmission of influenza A viruses in different species. We investigated the HA stability of pandemic live attenuated influenza vaccine (pLAIV) viruses and observed that the pLAIV viruses consistently had a less stable HA than the corresponding wild-type influenza viruses. The reduced HA stability and temperature sensitivity of the pLAIV viruses may account for their restricted replication in clinical trials. PMID:25122789

Efficiency of Airborne Sample Analysis Platform (ASAP) bioaerosol sampler for pathogen detection

PubMed Central

Sharma, Anurag; Clark, Elizabeth; McGlothlin, James D.; Mittal, Suresh K.

2015-01-01

The threat of bioterrorism and pandemics has highlighted the urgency for rapid and reliable bioaerosol detection in different environments. Safeguarding against such threats requires continuous sampling of the ambient air for pathogen detection. In this study we investigated the efficacy of the Airborne Sample Analysis Platform (ASAP) 2800 bioaerosol sampler to collect representative samples of air and identify specific viruses suspended as bioaerosols. To test this concept, we aerosolized an innocuous replication-defective bovine adenovirus serotype 3 (BAdV3) in a controlled laboratory environment. The ASAP efficiently trapped the surrogate virus at 5 × 103 plaque-forming units (p.f.u.) [2 × 105 genome copy equivalent] concentrations or more resulting in the successful detection of the virus using quantitative PCR. These results support the further development of ASAP for bioaerosol pathogen detection. PMID:26074900

Goodman High Throughput Spectrograph | SOAR

Science.gov Websites

SPARTAN Near-IR Camera Ohio State Infrared Imager/Spectrograph (OSIRIS) - NO LONGER AVAILABLE SOAR 320-850 nm wavelength range. The paper describing the instrument is Clemens et al. (2004) Applying for IRAF. Publishing results based on Goodman data?: ADS link to 2004 SPIE Goodman Spectrograph paper

The coude spectrograph and echelle scanner of the 2.7 m telescope at McDonald Observatory.

NASA Technical Reports Server (NTRS)

Tull, R. G.

1972-01-01

Discussion of certain design aspects of the coude spectrograph, and description of the coude scanner that uses some of the spectrograph optics. The configuration of the large echelle grating used is reviewed along with the systems of computer scanner control and data handling.

The Coude spectrograph and echelle scanner of the 2.7 m telescope at McDonald observatory

NASA Technical Reports Server (NTRS)

Tull, R. G.

1972-01-01

The design of the Coude spectrograph of the 2.7 m McDonald telescope is discussed. A description is given of the Coude scanner which uses the spectrograph optics, the configuration of the large echelle and the computer scanner control and data systems.

VizieR Online Data Catalog: CARMENES radial velocity curves of 7 M-dwarf (Trifonov+, 2018)

NASA Astrophysics Data System (ADS)

Trifonov, T.; Kuerster, M.; Zechmeister, M.; Tal-Or, L.; Caballero, J. A.; Quirrenbach, A.; Amado, P. J.; Ribas, I.; Reiners, A.; Reffert, S.; Dreizler, S.; Hatzes, A. P.; Kaminski, A.; Launhardt, R.; Henning, T.; Montes, D.; Bejar, V. J. S.; Mundt, R.; Pavlov, A.; Schmitt, J. H. M. M.; Seifert, W.; Morales, J. C.; Nowak, G.; Jeffers, S. V.; Rodriguez-Lopez, C.; Del Burgo, C.; Anglada-Escude, G.; Lopez-Santiago, J.; Mathar, R. J.; Ammler-von Eiff, M.; Guenther, E. W.; Barrado, D.; Gonzalez Hernandez, J. I.; Mancini, L.; Stuermer, J.; Abril, M.; Aceituno, J.; Alonso-Floriano, F. J.; Antona, R.; Anwand-Heerwart, H.; Arroyo-Torres, B.; Azzaro, M.; Baroch, D.; Bauer, F. F.; Becerril, S.; Benitez, D.; Berdinas, Z. M.; Bergond, G.; Bluemcke, M.; Brinkmoeller, M.; Cano, J.; Cardenas Vazquez, M. C.; Casal, E.; Cifuentes, C.; Claret, A.; Colome, J.; Cortes-Contreras, M.; Czesla, S.; Diez-Alonso, E.; Feiz, C.; Fernandez, M.; Ferro, I. M.; Fuhrmeister, B.; Galadi-Enriquez, D.; Garcia-Piquer, A.; Garcia Vargas, M. L.; Gesa, L.; Gomez Galera, V.; Gonzalez-Peinado, R.; Groezinger, U.; Grohnert, S.; Guardia, J.; Guijarro, A.; de Guindos, E.; Gutierrez-Soto, J.; Hagen, H.-J.; Hauschildt, P. H.; Hedrosa, R. P.; Helmling, J.; Hermelo, I.; Hernandez Arabi, R.; Hernandez Castano, L.; Hernandez Hernando, F.; Herrero, E.; Huber, A.; Huke, P.; Johnson, E.; de Juan, E.; Kim, M.; Klein, R.; Klueter, J.; Klutsch, A.; Lafarga, M.; Lampon, M.; Lara, L. M.; Laun, W.; Lemke, U.; Lenzen, R.; Lopez Del Fresno, M.; Lopez-Gonzalez, J.; Lopez-Puertas, M.; Lopez Salas, J. F.; Luque, R.; Magan Madinabeitia, H.; Mall, U.; Mandel, H.; Marfil, E.; Marin Molina, J. A.; Maroto Fernandez, D.; Martin, E. L.; Martin-Ruiz, S.; Marvin, C. J.; Mirabet, E.; Moya, A.; Moreno-Raya, M. E.; Nagel, E.; Naranjo, V.; Nortmann, L.; Ofir, A.; Oreiro, R.; Palle, E.; Panduro, J.; Pascual, J.; Passegger, V. M.; Pedraz, S.; Perez-Calpena, A.; Perez Medialdea, D.; Perger, M.; Perryman, M. A. C.; Pluto, M.; Rabaza, O.; Ramon, A.; Rebolo, R.; Redondo, P.; Reinhardt, S.; Rhode, P.; Rix, H.-W.; Rodler, F.; Rodriguez, E.; Rodriguez Trinidad, A.; Rohlo, R.-R.; Rosich, A.; Sadegi, S.; Sanchez-Blanco, E.; Sanchez Carrasco, M. A.; Sanchez-Lopez, A.; Sanz-Forcada, J.; Sarkis, P.; Sarmiento, L. F.; Schaefer, S.; Schiller, J.; Schoefer, P.; Schweitzer, A.; Solano, E.; Stahl, O.; Strachan, J. B. P.; Suarez, J. C.; Tabernero, H. M.; Tala, M.; Tulloch, S. M.; Veredas, G.; Vico Linares, J. I.; Vilardel, F.; Wagner, K.; Winkler, J.; Woltho, V.; Xu, W.; Yan, F.; Zapatero Osorio, M. R.

2017-10-01

The two CARMENES spectrographs are grism cross-dispersed, white pupil, echelle spectrograph working in quasi-Littrow mode using a two-beam, two-slice image slicer. The visible spectrograph covers the wavelength range from 0.52um to 1.05um with 61 orders, a resolving power of R=94600, and a mean sampling of 2.8 pixels per resolution element. The data presented in this paper were taken during the early phase of operation of the CARMENES visible-light spectrograph. (8 data files).

Data reductions and data quality for the high resolution spectrograph on the Southern African Large Telescope

NASA Astrophysics Data System (ADS)

Crawford, S. M.; Crause, Lisa; Depagne, Éric; Ilkiewicz, Krystian; Schroeder, Anja; Kuhn, Rudolph; Hettlage, Christian; Romero Colmenaro, Encarni; Kniazev, Alexei; Väisänen, Petri

2016-08-01

The High Resolution Spectrograph (HRS) on the Southern African Large Telescope (SALT) is a dual beam, fiber-fed echelle spectrograph providing high resolution capabilities to the SALT observing community. We describe the available data reduction tools and the procedures put in place for regular monitoring of the data quality from the spectrograph. Data reductions are carried out through the pyhrs package. The data characteristics and instrument stability are reported as part of the SALT Dashboard to help monitor the performance of the instrument.

Second generation spectrograph for the Hubble Space Telescope

NASA Astrophysics Data System (ADS)

Woodgate, B. E.; Boggess, A.; Gull, T. R.; Heap, S. R.; Krueger, V. L.; Maran, S. P.; Melcher, R. W.; Rebar, F. J.; Vitagliano, H. D.; Green, R. F.; Wolff, S. C.; Hutchings, J. B.; Jenkins, E. B.; Linsky, J. L.; Moos, H. W.; Roesler, F.; Shine, R. A.; Timothy, J. G.; Weistrop, D. E.; Bottema, M.; Meyer, W.

1986-01-01

The preliminary design for the Space Telescope Imaging Spectrograph (STIS), which has been selected by NASA for definition study for future flight as a second-generation instrument on the Hubble Space Telescope (HST), is presented. STIS is a two-dimensional spectrograph that will operate from 1050 A to 11,000 A at the limiting HST resolution of 0.05 arcsec FWHM, with spectral resolutions of 100, 1200, 20,000, and 100,000 and a maximum field-of-view of 50 x 50 arcsec. Its basic operating modes include echelle model, long slit mode, slitless spectrograph mode, coronographic spectroscopy, photon time-tagging, and direct imaging. Research objectives are active galactic nuclei, the intergalactic medium, global properties of galaxies, the origin of stellar systems, stelalr spectral variability, and spectrographic mapping of solar system processes.

Compact high-resolution spectrographs for large and extremely large telescopes: using the diffraction limit

NASA Astrophysics Data System (ADS)

Robertson, J. Gordon; Bland-Hawthorn, Joss

2012-09-01

As telescopes get larger, the size of a seeing-limited spectrograph for a given resolving power becomes larger also, and for ELTs the size will be so great that high resolution instruments of simple design will be infeasible. Solutions include adaptive optics (but not providing full correction for short wavelengths) or image slicers (which give feasible but still large instruments). Here we develop the solution proposed by Bland-Hawthorn and Horton: the use of diffraction-limited spectrographs which are compact even for high resolving power. Their use is made possible by the photonic lantern, which splits a multi-mode optical fiber into a number of single-mode fibers. We describe preliminary designs for such spectrographs, at a resolving power of R ~ 50,000. While they are small and use relatively simple optics, the challenges are to accommodate the longest possible fiber slit (hence maximum number of single-mode fibers in one spectrograph) and to accept the beam from each fiber at a focal ratio considerably faster than for most spectrograph collimators, while maintaining diffraction-limited imaging quality. It is possible to obtain excellent performance despite these challenges. We also briefly consider the number of such spectrographs required, which can be reduced by full or partial adaptive optics correction, and/or moving towards longer wavelengths.

Crystal structure of full-length Zika virus NS5 protein reveals a conformation similar to Japanese encephalitis virus NS5

DOE Office of Scientific and Technical Information (OSTI.GOV)

Upadhyay, Anup K.; Cyr, Matthew; Longenecker, Kenton

The rapid spread of the recentZika virus(ZIKV) epidemic across various countries in the American continent poses a major health hazard for the unborn fetuses of pregnant women. To date, there is no effective medical intervention. The nonstructural protein 5 ofZika virus(ZIKV-NS5) is critical for ZIKV replication through the 5'-RNA capping and RNA polymerase activities present in its N-terminal methyltransferase (MTase) and C-terminal RNA-dependent RNA polymerase (RdRp) domains, respectively. The crystal structure of the full-length ZIKV-NS5 protein has been determined at 3.05 Å resolution from a crystal belonging to space groupP2 12 12 and containing two protein molecules in the asymmetricmore » unit. The structure is similar to that reported for the NS5 protein fromJapanese encephalitis virusand suggests opportunities for structure-based drug design targeting either its MTase or RdRp domain.« less

Volume phase holographic gratings for the Subaru Prime Focus Spectrograph: performance measurements of the prototype grating set

NASA Astrophysics Data System (ADS)

Barkhouser, Robert H.; Arns, James; Gunn, James E.

2014-08-01

The Prime Focus Spectrograph (PFS) is a major instrument under development for the 8.2 m Subaru telescope on Mauna Kea. Four identical, fixed spectrograph modules are located in a room above one Nasmyth focus. A 55 m fiber optic cable feeds light into the spectrographs from a robotic fiber positioner mounted at the telescope prime focus, behind the wide field corrector developed for Hyper Suprime-Cam. The positioner contains 2400 fibers and covers a 1.3 degree hexagonal field of view. Each spectrograph module will be capable of simultaneously acquiring 600 spectra. The spectrograph optical design consists of a Schmidt collimator, two dichroic beamsplitters to separate the light into three channels, and for each channel a volume phase holographic (VPH) grating and a dual- corrector, modified Schmidt reimaging camera. This design provides a 275 mm collimated beam diameter, wide simultaneous wavelength coverage from 380 nm to 1.26 µm, and good imaging performance at the fast f/1.1 focal ratio required from the cameras to avoid oversampling the fibers. The three channels are designated as the blue, red, and near-infrared (NIR), and cover the bandpasses 380-650 nm (blue), 630-970 nm (red), and 0.94-1.26 µm (NIR). A mosaic of two Hamamatsu 2k×4k, 15 µm pixel CCDs records the spectra in the blue and red channels, while the NIR channel employs a 4k×4k, substrate-removed HAWAII-4RG array from Teledyne, with 15 µm pixels and a 1.7 µm wavelength cutoff. VPH gratings have become the dispersing element of choice for moderate-resolution astronomical spectro- graphs due their potential for very high diffraction efficiency, low scattered light, and the more compact instru- ment designs offered by transmissive dispersers. High quality VPH gratings are now routinely being produced in the sizes required for instruments on large telescopes. These factors made VPH gratings an obvious choice for PFS. In order to reduce risk to the project, as well as fully exploit the performance potential of this technology, a set of three prototype VPH gratings (one each of the blue, red, and NIR designs) was ordered and has been recently delivered. The goal for these prototype units, but not a requirement, was to meet the specifications for the final gratings in order to serve as spares and also as early demonstration and integration articles. In this paper we present the design and specifications for the PFS gratings, the plan and setups used for testing both the prototype and final gratings, and results from recent optical testing of the prototype grating set.

Smallpox as a Bioweapon: Should We Be Concerned?

DTIC Science & Technology

2012-03-01

United Nations U.S. United States of America USAMRIID United States Army Medical Research Institute of Infectious Diseases USFK United States Forces...Union or in the United States of America . There the virus would remain secured, yet available to fulfill future scientific needs.2 The only remaining...smallpox or could be able to manufacture the virus in a laboratory, combined with the fact that the United States of America has a significantly

Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus Infections, United States, 2010–11

PubMed Central

Storms, Aaron D.; Gubareva, Larisa V.; Su, Su; Wheeling, John T.; Okomo-Adhiambo, Margaret; Pan, Chao-Yang; Reisdorf, Erik; St. George, Kirsten; Myers, Robert; Wotton, Jason T.; Robinson, Sara; Leader, Brandon; Thompson, Martha; Shannon, Marjorie; Klimov, Alexander

2012-01-01

During October 2010–July 2011, 1.0% of pandemic (H1N1) 2009 viruses in the United States were oseltamivir resistant, compared with 0.5% during the 2009–10 influenza season. Of resistant viruses from 2010–11 and 2009–10, 26% and 89%, respectively, were from persons exposed to oseltamivir before specimen collection. Findings suggest limited community transmission of oseltamivir-resistant virus. PMID:22305467

Update: Influenza Activity - United States, October 2-December 17, 2016.

PubMed

Shang, Mei; Blanton, Lenee; Kniss, Krista; Mustaquim, Desiree; Alabi, Noreen; Barnes, Stephen; Budd, Alicia; Davlin, Stacy L; Kramer, Natalie; Garg, Shikha; Cummings, Charisse N; Flannery, Brendan; Fry, Alicia M; Grohskopf, Lisa A; Olsen, Sonja J; Bresee, Joseph; Sessions, Wendy; Garten, Rebecca; Xu, Xiyan; Elal, Anwar Isa Abd; Gubareva, Larisa; Barnes, John; Wentworth, David E; Burns, Erin; Katz, Jacqueline; Jernigan, Daniel; Brammer, Lynnette

2016-12-30

This report summarizes U.S. influenza activity * during October 2-December 17, 2016. † Influenza activity in the United States remained low in October and has been slowly increasing since November. Influenza A viruses were identified most frequently, with influenza A (H3N2) viruses predominating. Most influenza viruses characterized during this period were genetically or antigenically similar to the reference viruses representing vaccine components recommended for production in the 2016-17 Northern Hemisphere influenza vaccines.

Spectrum from Faint Galaxy IRAS F00183-7111

NASA Technical Reports Server (NTRS)

2003-01-01

NASA's Spitzer Space Telescope has detected the building blocks of life in the distant universe, albeit in a violent milieu. Training its powerful infrared eye on a faint object located at a distance of 3.2 billion light-years, Spitzer has observed the presence of water and organic molecules in the galaxy IRAS F00183-7111. With an active galactic nucleus, this is one of the most luminous galaxies in the universe, rivaling the energy output of a quasar. Because it is heavily obscured by dust (see visible-light image in the inset), most of its luminosity is radiated at infrared wavelengths.

The infrared spectrograph instrument onboard Spitzer breaks light into its constituent colors, much as a prism does for visible light. The image shows a low-resolution spectrum of the galaxy obtained by the spectrograph at wavelengths between 4 and 20 microns. Spectra are graphical representations of a celestial object's unique blend of light. Characteristic patterns, or fingerprints, within the spectra allow astronomers to identify the object's chemical composition and to determine such physical properties as temperature and density.

The broad depression in the center of the spectrum denotes the presence of silicates (chemically similar to beach sand) in the galaxy. An emission peak within the bottom of the trough is the chemical signature for molecular hydrogen. The hydrocarbons (orange) are organic molecules comprised of carbon and hydrogen, two of the most common elements on Earth. Since it has taken more than three billion years for the light from the galaxy to reach Earth, it is intriguing to note the presence of organics in a distant galaxy at a time when life is thought to have started forming on our home planet.

Additional features in the spectrum reveal the presence of water ice (blue), carbon dioxide ice (green) and carbon monoxide (purple) in both gas and solid forms. The magenta peak corresponds to singly ionized neon gas, a spectral line often used by astronomers as a diagnostic of star formation rates in distant galaxies.

The Spitzer spectrum is the result of only 14 minutes of integration time, highlighting the power of the infrared spectrograph to unlock the secrets of distant galaxies.

National surveillance for swine influenza virus in the United States, 2009-present

USDA-ARS?s Scientific Manuscript database

Background and Objectives. In April 2009, a National surveillance plan for swine influenza virus in swine was implemented in the United States. Initial focus of the surveillance was to detect the presence and distribution of viruses (especially the 2009 H1N1 pandemic influenza, A(H1N1)pdm09) that ar...

The 4d8-(4d74f + 4d76p + 4p54d9) transitions in the spectrum of five times ionized indium (In VI)

NASA Astrophysics Data System (ADS)

Ryabtsev, A. N.; Tauheed, A.; Swapnil; Kildiyarova, R. R.; Kononov, E. Ya

2018-06-01

The spectrum of five times ionized indium excited in a vacuum spark has been studied in the wavelength region 180-250 Å using a 3 m grazing incidence spectrograph. Transitions from highly excited interacting configurations 4d74f + 4d76p + 4p54d9 to the ground state 4d8 configuration were studied. 165 spectral lines were identified and 81 levels of the excited configurations were found.

DNA vaccine protects ornamental koi (Cyprinus carpio koi) against North American spring viremia of carp virus

USGS Publications Warehouse

Emmenegger, E.J.; Kurath, G.

2008-01-01

The emergence of spring viremia of carp virus (SVCV) in the United States constitutes a potentially serious alien pathogen threat to susceptible fish stocks in North America. A DNA vaccine with an SVCV glycoprotein (G) gene from a North American isolate was constructed. In order to test the vaccine a challenge model utilizing a specific pathogen-free domestic koi stock and a cold water stress treatment was also developed. We have conducted four trial studies demonstrating that the pSGnc DNA vaccine provided protection in vaccinated fish against challenge at low, moderate, and high virus doses of the homologous virus. The protection was significant (p < 0.05) as compared to fish receiving a mock vaccine construct containing a luciferase reporter gene and to non-vaccinated controls in fish ranging in age from 3 to 14 months. In all trials, the SVCV-G DNA immunized fish were challenged 28-days post-vaccination (546 degree-days) and experienced low mortalities varying from 10 to 50% with relative percent survivals ranging from 50 to 88%. The non-vaccinated controls and mock construct vaccinated fish encountered high cumulative percent mortalities ranging from 70 to 100%. This is the first report of a SVCV DNA vaccine being tested successfully in koi. These experiments prove that the SVCV DNA (pSGnc) vaccine can elicit specific reproducible protection and validates its potential use as a prophylactic vaccine in koi and other vulnerable North American fish stocks.

ENVIRONMENTAL TECHNOLOGY VERIFICATION REPORT - PHYSICAL REMOVAL OF MICROBIAL CONTAMINATION AGENTS IN DRINKING WATER, WATTS P{REMIER ULTRA 5 REVERSE OSMOSIS DRINKING WATER TREATMENT SYSTEM (POU)

EPA Science Inventory

The Watts Premier Ultra 5 system was tested for removal of bacteria and viruses at NSF International's Laboratory. Watts Premier submitted ten units, which were split into two groups of five. One group received 25 days of conditioning prior to challenge testing, while the secon...

A Novel A(H7N2) Influenza Virus Isolated from a Veterinarian Caring for Cats in a New York City Animal Shelter Causes Mild Disease and Transmits Poorly in the Ferret Model.

PubMed

Belser, Jessica A; Pulit-Penaloza, Joanna A; Sun, Xiangjie; Brock, Nicole; Pappas, Claudia; Creager, Hannah M; Zeng, Hui; Tumpey, Terrence M; Maines, Taronna R

2017-08-01

In December 2016, a low-pathogenic avian influenza (LPAI) A(H7N2) virus was identified to be the causative source of an outbreak in a cat shelter in New York City, which subsequently spread to multiple shelters in the states of New York and Pennsylvania. One person with occupational exposure to infected cats became infected with the virus, representing the first LPAI H7N2 virus infection in a human in North America since 2003. Considering the close contact that frequently occurs between companion animals and humans, it was critical to assess the relative risk of this novel virus to public health. The virus isolated from the human case, A/New York/108/2016 (NY/108), caused mild and transient illness in ferrets and mice but did not transmit to naive cohoused ferrets following traditional or aerosol-based inoculation methods. The environmental persistence of NY/108 virus was generally comparable to that of other LPAI H7N2 viruses. However, NY/108 virus replicated in human bronchial epithelial cells with an increased efficiency compared with that of previously isolated H7N2 viruses. Furthermore, the novel H7N2 virus was found to utilize a relatively lower pH for hemagglutinin activation, similar to human influenza viruses. Our data suggest that the LPAI H7N2 virus requires further adaptation before representing a substantial threat to public health. However, the reemergence of an LPAI H7N2 virus in the northeastern United States underscores the need for continuous surveillance of emerging zoonotic influenza viruses inclusive of mammalian species, such as domestic felines, that are not commonly considered intermediate hosts for avian influenza viruses. IMPORTANCE Avian influenza viruses are capable of crossing the species barrier to infect mammals, an event of public health concern due to the potential acquisition of a pandemic phenotype. In December 2016, an H7N2 virus caused an outbreak in cats in multiple animal shelters in New York State. This was the first detection of this virus in the northeastern United States in over a decade and the first documented infection of a felid with an H7N2 virus. A veterinarian became infected following occupational exposure to H7N2 virus-infected cats, necessitating the evaluation of this virus for its capacity to cause disease in mammals. While the H7N2 virus was associated with mild illness in mice and ferrets and did not spread well between ferrets, it nonetheless possessed several markers of virulence for mammals. These data highlight the promiscuity of influenza viruses and the need for diligent surveillance across multiple species to quickly identify an emerging strain with pandemic potential. Copyright © 2017 American Society for Microbiology.

A Novel A(H7N2) Influenza Virus Isolated from a Veterinarian Caring for Cats in a New York City Animal Shelter Causes Mild Disease and Transmits Poorly in the Ferret Model

PubMed Central

Belser, Jessica A.; Pulit-Penaloza, Joanna A.; Sun, Xiangjie; Brock, Nicole; Pappas, Claudia; Creager, Hannah M.; Zeng, Hui; Tumpey, Terrence M.

2017-01-01

ABSTRACT In December 2016, a low-pathogenic avian influenza (LPAI) A(H7N2) virus was identified to be the causative source of an outbreak in a cat shelter in New York City, which subsequently spread to multiple shelters in the states of New York and Pennsylvania. One person with occupational exposure to infected cats became infected with the virus, representing the first LPAI H7N2 virus infection in a human in North America since 2003. Considering the close contact that frequently occurs between companion animals and humans, it was critical to assess the relative risk of this novel virus to public health. The virus isolated from the human case, A/New York/108/2016 (NY/108), caused mild and transient illness in ferrets and mice but did not transmit to naive cohoused ferrets following traditional or aerosol-based inoculation methods. The environmental persistence of NY/108 virus was generally comparable to that of other LPAI H7N2 viruses. However, NY/108 virus replicated in human bronchial epithelial cells with an increased efficiency compared with that of previously isolated H7N2 viruses. Furthermore, the novel H7N2 virus was found to utilize a relatively lower pH for hemagglutinin activation, similar to human influenza viruses. Our data suggest that the LPAI H7N2 virus requires further adaptation before representing a substantial threat to public health. However, the reemergence of an LPAI H7N2 virus in the northeastern United States underscores the need for continuous surveillance of emerging zoonotic influenza viruses inclusive of mammalian species, such as domestic felines, that are not commonly considered intermediate hosts for avian influenza viruses. IMPORTANCE Avian influenza viruses are capable of crossing the species barrier to infect mammals, an event of public health concern due to the potential acquisition of a pandemic phenotype. In December 2016, an H7N2 virus caused an outbreak in cats in multiple animal shelters in New York State. This was the first detection of this virus in the northeastern United States in over a decade and the first documented infection of a felid with an H7N2 virus. A veterinarian became infected following occupational exposure to H7N2 virus-infected cats, necessitating the evaluation of this virus for its capacity to cause disease in mammals. While the H7N2 virus was associated with mild illness in mice and ferrets and did not spread well between ferrets, it nonetheless possessed several markers of virulence for mammals. These data highlight the promiscuity of influenza viruses and the need for diligent surveillance across multiple species to quickly identify an emerging strain with pandemic potential. PMID:28515300

The problem of scattering in fibre-fed VPH spectrographs and possible solutions

NASA Astrophysics Data System (ADS)

Ellis, S. C.; Saunders, Will; Betters, Chris; Croom, Scott

2014-07-01

All spectrographs unavoidably scatter light. Scattering in the spectral direction is problematic for sky subtraction, since atmospheric spectral lines are blurred. Scattering in the spatial direction is problematic for fibre fed spectrographs, since it limits how closely fibres can be packed together. We investigate the nature of this scattering and show that the scattering wings have both a Lorentzian component, and a shallower (1/r) component. We investigate the causes of this from a theoretical perspective, and argue that for the spectral PSF the Lorentzian wings are in part due to the profile of the illumination of the pupil of the spectrograph onto the diffraction grating, whereas the shallower component is from bulk scattering. We then investigate ways to mitigate the diffractive scattering by apodising the pupil. In the ideal case of a Gaussian apodised pupil, the scattering can be significantly improved. Finally we look at realistic models of the spectrograph pupils of fibre fed spectrographs with a centrally obstructed telescope, and show that it is possible to apodise the pupil through non-telecentric injection into the fibre.

ORAC-DR: A generic data reduction pipeline infrastructure

NASA Astrophysics Data System (ADS)

Jenness, Tim; Economou, Frossie

2015-03-01

ORAC-DR is a general purpose data reduction pipeline system designed to be instrument and observatory agnostic. The pipeline works with instruments as varied as infrared integral field units, imaging arrays and spectrographs, and sub-millimeter heterodyne arrays and continuum cameras. This paper describes the architecture of the pipeline system and the implementation of the core infrastructure. We finish by discussing the lessons learned since the initial deployment of the pipeline system in the late 1990s.

A spectrographic study of the aurora and the relation to solar wind pressure pulses.

NASA Astrophysics Data System (ADS)

Stockton-Chalk, A. B.; Lanchester, B. S.; Ivchenko, N.; Lummerzheim, D.; Throp, K.

SIF (Spectrographic Imaging Facility) is a Southampton University / University College London collaboration. The platform consists of a High Throughput Imaging Echelle Spectrograph, HiTIES, two photometers and a narrow angle auroral imager. The spectrograph has a mosaic filter; each of the three spectral panels are centred over/near important spectral features: Hbeta (486.1nm), N2+(470.9nm), N2+(465.2nm), thus allowing studies of proton and electron aurorae. The platform has been successfully deployed in Svalbard since November 1999. The purpose of the experiment was to take spectrographic measurements to study the relationship between proton and electron precipitation and to understand the nature of the precipitating spectrum of protons, both in energy and angular distributions. We present a study of the aurora observed in relation to solar wind pressure pulses.

High efficiency spectrographs for the EUV and soft X-rays

NASA Technical Reports Server (NTRS)

Cash, W.

1983-01-01

The use of grazing incidence optics and reflection grating designs is shown to be a method that improves the performance of spectrographs at wavelengths shorter than 1200 A. Emphasis is laid on spectroscopic designs for X ray and EUV astronomy, with sample designs for an objective reflection grating spectrograph (ORGS) and an echelle spectrograph for wavelengths longer than 100 A. Conical diffraction allows operations at grazing incidence in the echelle spectrograph. In ORGS, the extreme distance of X ray objects aids in collimating the source radiation, which encounters conical diffraction within the instrument, proceeds parallel to the optical axis, and arrives at the detector. A series of gratings is used to achieve the effect. A grazing echelle is employed for EUV observations, and offers a resolution of 20,000 over a 300 A bandpass.

Visible camera cryostat design and performance for the SuMIRe Prime Focus Spectrograph (PFS)

NASA Astrophysics Data System (ADS)

Smee, Stephen A.; Gunn, James E.; Golebiowski, Mirek; Hope, Stephen C.; Madec, Fabrice; Gabriel, Jean-Francois; Loomis, Craig; Le fur, Arnaud; Dohlen, Kjetil; Le Mignant, David; Barkhouser, Robert; Carr, Michael; Hart, Murdock; Tamura, Naoyuki; Shimono, Atsushi; Takato, Naruhisa

2016-08-01

We describe the design and performance of the SuMIRe Prime Focus Spectrograph (PFS) visible camera cryostats. SuMIRe PFS is a massively multi-plexed ground-based spectrograph consisting of four identical spectrograph modules, each receiving roughly 600 fibers from a 2394 fiber robotic positioner at the prime focus. Each spectrograph module has three channels covering wavelength ranges 380 nm - 640 nm, 640 nm - 955 nm, and 955 nm - 1.26 um, with the dispersed light being imaged in each channel by a f/1.07 vacuum Schmidt camera. The cameras are very large, having a clear aperture of 300 mm at the entrance window, and a mass of 280 kg. In this paper we describe the design of the visible camera cryostats and discuss various aspects of cryostat performance.

VizieR Online Data Catalog: Stellar nuclei and bulges of nearby S0 galaxies (Sil'chenko, 2016)

NASA Astrophysics Data System (ADS)

Sil'Chenko, O. K.

2016-09-01

The integral-field spectrograph Spectrographic Areal Unit for Research on Optical Nebulae (SAURON) was operating at the 4.2m William Herschel Telescope belonging to the ING of telescopes on La Palma. It worked in "TIGER mode", giving about 1500 spectra simultaneously, each for a 0.94''*0.94'' square element ("spaxel") from a (central) part of a galaxy. A total set of spectra covers an area of 41''*33''. The spectral range of the unit is rather narrow, 4800-5350Å, and its spectral resolution has been fixed since 2007 at about 4.3Å. There were two surveys of nearby early-type galaxies with SAURON. The first one, which started in 1999 and finished in 2004, involved 72 galaxies, among those 48 early-type ones and 24 spirals (de Zeeuw et al. 2002MNRAS.329..513D). The second one undertaken in 2007-2008 added more early-type galaxies, including dwarfs, to complete the volume-limited (D<42Mpc) sample (Cappellari et al. 2011, Cat. J/MNRAS/413/813). The total sample of early-type galaxies investigated in these two surveys includes 260 objects, and 200 of them are lenticular galaxies. For my analysis I have selected a subsample of 143 S0 galaxies that were observed in 2007-2008. (2 data files).

Sequence of Reston Virus Isolate AZ-1435, an Ebolavirus Isolate Obtained during the 1989-1990 Reston Virus Epizootic in the United States.

PubMed

Cornish, Joseph P; Diaz, Larissa; Ricklefs, Stacy M; Kanakabandi, Kishore; Sword, Jennifer; Jahrling, Peter B; Kuhn, Jens H; Porcella, Stephen F; Johnson, Reed F

2017-01-12

Reston virus (RESTV) was discovered in 1989-1990 during three connected epizootics of highly lethal viral hemorrhagic fever among captive macaques in primate housing facilities in the United States and Philippines. Currently, only one RESTV isolate from that outbreak (named Pennsylvania) has been sequenced. Here, we report the sequence of a second isolate, Reston virus/M.fascicularis-tc/USA/1990/Philippines89-AZ1435. Copyright © 2017 Cornish et al.

CARMENES in SPIE 2014. Building a fibre link for CARMENES

NASA Astrophysics Data System (ADS)

Stürmer, J.; Stahl, O.; Schwab, C.; Seifert, W.; Quirrenbach, A.; Amado, P. J.; Ribas, I.; Reiners, A.; Caballero, J. A.

2014-07-01

Optical fibres have successfully been used to couple high-resolution spectrographs to telescopes for many years. As they allow the instrument to be placed in a stable and isolated location, they decouple the spectrograph from environmental influences. Fibres also provide a substantial increase in stability of the input illumination of the spectrograph, which makes them a key optical element of the two high-resolution spectrographs of CARMENES. The optical properties of appropriate fibres are investigated, especially their scrambling and focal ratio degradation (FRD) behaviour. In the laboratory the output illumination of various fibres is characterized and different methods to increase the scrambling of the fibre link are tested and compared. In particular, a combination of fibres with different core shapes shows a very good scrambling performance. The near-field (NF) shows an extremely low sensitivity to the exact coupling conditions of the fibre. However, small changes in the far-field (FF) can still be seen. Related optical simulations of the stability performance of the two spectrographs are presented. The simulations focus on the influence of the non-perfect illumination stabilization in the far-field of the fibre on the radial velocity stability of the spectrographs. We use ZEMAX models of the spectrographs to simulate how the barycentres of the spots move depending on the FF illumination pattern and therefore how the radial velocity is affected by a variation of the spectrograph illumination. This method allows to establish a quantitative link between the results of the measurements of the optical properties of fibres on the one hand and the radial velocity precision on the other. The results provide a strong indication that 1ms?1 precision can be reached using a circular-octagonal fibre link even without the use of an optical double scrambler, which has successfully been used in other high-resolution spectrographs. Given the typical throughput of an optical double scrambler of about 75% to 85 %, our solution allows for a substantially higher throughput of the system.

Crystallization and preliminary X-ray diffraction analysis of West Nile virus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaufmann, Barbel; Plevka, Pavel; Kuhn, Richard J.

2010-05-25

West Nile virus, a human pathogen, is closely related to other medically important flaviviruses of global impact such as dengue virus. The infectious virus was purified from cell culture using polyethylene glycol (PEG) precipitation and density-gradient centrifugation. Thin amorphously shaped crystals of the lipid-enveloped virus were grown in quartz capillaries equilibrated by vapor diffusion. Crystal diffraction extended at best to a resolution of about 25 {angstrom} using synchrotron radiation. A preliminary analysis of the diffraction images indicated that the crystals had unit-cell parameters a {approx_equal} b {approx_equal} 480 {angstrom}, {gamma} = 120{sup o}, suggesting a tight hexagonal packing of onemore » virus particle per unit cell.« less

Whole genome sequencing and phylogenetic analysis of Bluetongue virus serotype 2 strains isolated in the Americas including a novel strain from the western United States.

PubMed

Gaudreault, Natasha N; Mayo, Christie E; Jasperson, Dane C; Crossley, Beate M; Breitmeyer, Richard E; Johnson, Donna J; Ostlund, Eileen N; MacLachlan, N James; Wilson, William C

2014-07-01

Bluetongue is a potentially fatal arboviral disease of domestic and wild ruminants that is characterized by widespread edema and tissue necrosis. Bluetongue virus (BTV) serotypes 10, 11, 13, and 17 occur throughout much of the United States, whereas serotype 2 (BTV-2) was previously only detected in the southeastern United States. Since 1998, 10 other BTV serotypes have also been isolated from ruminants in the southeastern United States. In 2010, BTV-2 was identified in California for the first time, and preliminary sequence analysis indicated that the virus isolate was closely related to BTV strains circulating in the southeastern United States. In the current study, the whole genome sequence of the California strain of BTV-2 was compared with those of other BTV-2 strains in the Americas. The results of the analysis suggest co-circulation of genetically distinct viruses in the southeastern United States, and further suggest that the 2010 western isolate is closely related to southeastern strains of BTV. Although it remains uncertain as to how this novel virus was translocated to California, the findings of the current study underscore the need for ongoing surveillance of this economically important livestock disease.

First Complete Genome Sequence of Papaya ringspot virus-W Isolated from a Gourd in the United States.

PubMed

Ali, Akhtar

2017-01-12

In the United States, the Papaya ringspot virus was first reported from papaya in Florida in 1949. Here, we determined the first complete genome sequence (10,302 nucleotides) of a Papaya ringspot virus-W isolate, which was collected from a commercial field of gourd in Tulsa, OK. Copyright © 2017 Ali.

Infection Risk for Persons Exposed to Highly Pathogenic Avian Influenza A H5 Virus-Infected Birds, United States, December 2014-March 2015.

PubMed

Arriola, Carmen S; Nelson, Deborah I; Deliberto, Thomas J; Blanton, Lenee; Kniss, Krista; Levine, Min Z; Trock, Susan C; Finelli, Lyn; Jhung, Michael A

2015-12-01

Newly emerged highly pathogenic avian influenza (HPAI) A H5 viruses have caused outbreaks among birds in the United States. These viruses differ genetically from HPAI H5 viruses that previously caused human illness, most notably in Asia and Africa. To assess the risk for animal-to-human HPAI H5 virus transmission in the United States, we determined the number of persons with self-reported exposure to infected birds, the number with an acute respiratory infection (ARI) during a 10-day postexposure period, and the number with ARI who tested positive for influenza by real-time reverse transcription PCR or serologic testing for each outbreak during December 15, 2014-March 31, 2015. During 60 outbreaks in 13 states, a total of 164 persons were exposed to infected birds. ARI developed in 5 of these persons within 10 days of exposure. H5 influenza virus infection was not identified in any persons with ARI, suggesting a low risk for animal-to-human HPAI H5 virus transmission.

Properties of polysaccharides in several seaweeds from Atlantic Canada and their potential anti-influenza viral activities

NASA Astrophysics Data System (ADS)

Jiao, Guangling; Yu, Guangli; Wang, Wei; Zhao, Xiaoliang; Zhang, Junzeng; Ewart, Stephen H.

2012-06-01

To explore the polysaccharides from selected seaweeds of Atlantic Canada and to evaluate their potential anti-influenza virus activities, polysaccharides were isolated from several Atlantic Canadian seaweeds, including three red algae ( Polysiphonia lanosa, Furcellaria lumbricalis, and Palmaria palmata), two brown algae ( Ascophyllum nodosum and Fucus vesiculosus), and one green alga ( Ulva lactuca) by sequential extraction with cold water, hot water, and alkali solutions. These polysaccharides were analyzed for monosaccharide composition and other general chemical properties, and they were evaluated for anti-influenza virus activities. Total sugar contents in these polysaccharides ranged from 15.4% (in U. lactuca) to 91.4% (in F. lumbricalis); sulfation level was as high as 17.6% in a polysaccharide from U. lactuca, whereas it could not be detected in an alikali-extract from P. palmaria. For polysaccharides from red seaweeds, the main sugar units were sulfated galactans (agar or carrageenan) for P. lanosa, F. lumbricalis, and xylans for P. palmata. In brown seaweeds, the polysaccharides largely contained sulfated fucans, whereas the polysaccharides in green seaweed were mainly composed of heteroglycuronans. Screening for antiviral activity against influenza A/PR/8/34 (H1N1) virus revealed that brown algal polysaccharides were particularly effective. Seaweeds from Atlantic Canada are a good source of marine polysaccharides with potential antiviral properties.

Identification of lymphoproliferative disease virus in wild turkeys (Meleagris gallopavo) in the United States

USDA-ARS?s Scientific Manuscript database

Viral-associated lymphoproliferative neoplasia in domestic poultry is caused by infection with a herpesvirus (Marek’s disease virus) or three species of retroviruses [Reticuloendotheliosis virus (REV), Avian leukosis/sarcoma virus, lymphoproliferative disease virus (LPDV)]. Previously, retroviral n...

Ebola Virus Disease and Pregnancy: A Retrospective Cohort Study of Patients Managed at 5 Ebola Treatment Units in West Africa.

PubMed

Henwood, Patricia C; Bebell, Lisa M; Roshania, Reshma; Wolfman, Vanessa; Mallow, Michaela; Kalyanpur, Anushka; Levine, Adam C

2017-07-15

Reliable data are lacking on pregnancy outcomes during Ebola virus disease (EVD) epidemics. We aimed to characterize symptoms and outcomes among pregnant women admitted to Ebola treatment units (ETUs) with suspected and confirmed EVD to better inform obstetric management. We analyzed a retrospective cohort of reproductive-aged women presenting to 5 West African ETUs from September 2014 to September 2015. We compared clinical symptoms, risk of EVD diagnosis, and mortality between pregnant and nonpregnant women. Of 729 reproductive-aged women admitted to study ETUs, 44 (6%) reported pregnancy. Thirteen of 44 pregnant women (30%) tested EVD positive; 6 of 13 (46%) died. Pregnant women were less likely than nonpregnant women to report anorexia, asthenia, diarrhea, fever, myalgias/arthralgias, nausea, or vomiting (P < .05) at admission. Pregnant women with suspected EVD had the same risk, however, of laboratory-confirmed EVD (30% vs 24%, P = .38). While pregnant women with confirmed EVD had similar Ebola viral loads on presentation to nonpregnant women, as measured by initial cycle threshold (26.4 vs 23.2, P = .16), they were less likely to have myalgias/arthralgias (P< .001) and vomiting (P = .02). Both all-cause mortality (14% vs 19%, P = .39) and EVD-specific mortality (46% vs 54%, P = .60) were not significantly different between pregnant and nonpregnant women. Two neonates born live in the ETU died within 8 days. We find no evidence to support a difference in the risk of death between pregnant women with suspected or confirmed EVD compared to nonpregnant women. Limited data suggest poor fetal and neonatal outcomes in EVD-affected pregnancies. © The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America.

Spatially resolved Spectroscopy of Europa’s Large-scale Compositional Units at 3-4 μm with Keck NIRSPEC

NASA Astrophysics Data System (ADS)

Fischer, P. D.; Brown, M. E.; Trumbo, S. K.; Hand, K. P.

2017-01-01

We present spatially resolved spectroscopic observations of Europa’s surface at 3-4 μm obtained with the near-infrared spectrograph and adaptive optics system on the Keck II telescope. These are the highest quality spatially resolved reflectance spectra of Europa’s surface at 3-4 μm. The observations spatially resolve Europa’s large-scale compositional units at a resolution of several hundred kilometers. The spectra show distinct features and geographic variations associated with known compositional units; in particular, large-scale leading hemisphere chaos shows a characteristic longward shift in peak reflectance near 3.7 μm compared to icy regions. These observations complement previous spectra of large-scale chaos, and can aid efforts to identify the endogenous non-ice species.

Antiviral activity of lauryl gallate against animal viruses.

PubMed

Hurtado, Carolina; Bustos, Maria Jose; Sabina, Prado; Nogal, Maria Luisa; Granja, Aitor G; González, Maria Eugenia; Gónzalez-Porqué, Pedro; Revilla, Yolanda; Carrascosa, Angel L

2008-01-01

Antiviral compounds are needed in the control of many animal and human diseases. We analysed the effect of the antitumoural drug lauryl gallate on the infectivity of the African swine fever virus among other DNA (herpes simplex and vaccinia) and RNA (influenza, porcine transmissible gastroenteritis and Sindbis) viruses, paying attention to its effect on the viability of the corresponding host cells. Viral production was strongly inhibited in different cell lines at non-toxic concentrations of the drug (1-10 microM), reducing the titres 3->5 log units depending on the multiplicity of infection. In our model system (African swine fever virus in Vero cells), the addition of the drug 1 h before virus adsorption completely abolished virus productivity in a one-step growth virus cycle. Interestingly, no inhibitory effect was observed when lauryl gallate was added after 5-8 h post-infection. Both cellular and viral DNA synthesis and late viral transcription were inhibited by the drug; however, the early viral protein synthesis and the virus-mediated increase of p53 remained unaffected. Activation of the apoptotic effector caspase-3 was not detected after lauryl gallate treatment of Vero cells. Furthermore, the presence of the drug abrogated the activation of this protease induced by the virus infection. Lauryl gallate is a powerful antiviral agent against several pathogens of clinical and veterinary importance. The overall results indicate that a cellular factor or function might be the target of the antiviral action of alkyl gallates.

MUSE alignment onto VLT

NASA Astrophysics Data System (ADS)

Laurent, Florence; Renault, Edgard; Boudon, Didier; Caillier, Patrick; Daguisé, Eric; Dupuy, Christophe; Jarno, Aurélien; Lizon, Jean-Louis; Migniau, Jean-Emmanuel; Nicklas, Harald; Piqueras, Laure

2014-07-01

MUSE (Multi Unit Spectroscopic Explorer) is a second generation Very Large Telescope (VLT) integral field spectrograph developed for the European Southern Observatory (ESO). It combines a 1' x 1' field of view sampled at 0.2 arcsec for its Wide Field Mode (WFM) and a 7.5"x7.5" field of view for its Narrow Field Mode (NFM). Both modes will operate with the improved spatial resolution provided by GALACSI (Ground Atmospheric Layer Adaptive Optics for Spectroscopic Imaging), that will use the VLT deformable secondary mirror and 4 Laser Guide Stars (LGS) foreseen in 2015. MUSE operates in the visible wavelength range (0.465-0.93 μm). A consortium of seven institutes is currently commissioning MUSE in the Very Large Telescope for the Preliminary Acceptance in Chile, scheduled for September, 2014. MUSE is composed of several subsystems which are under the responsibility of each institute. The Fore Optics derotates and anamorphoses the image at the focal plane. A Splitting and Relay Optics feed the 24 identical Integral Field Units (IFU), that are mounted within a large monolithic structure. Each IFU incorporates an image slicer, a fully refractive spectrograph with VPH-grating and a detector system connected to a global vacuum and cryogenic system. During 2012 and 2013, all MUSE subsystems were integrated, aligned and tested to the P.I. institute at Lyon. After successful PAE in September 2013, MUSE instrument was shipped to the Very Large Telescope in Chile where that was aligned and tested in ESO integration hall at Paranal. After, MUSE was directly transported, fully aligned and without any optomechanical dismounting, onto VLT telescope where the first light was overcame the 7th of February, 2014. This paper describes the alignment procedure of the whole MUSE instrument with respect to the Very Large Telescope (VLT). It describes how 6 tons could be move with accuracy better than 0.025mm and less than 0.25 arcmin in order to reach alignment requirements. The success of the MUSE alignment is demonstrated by the excellent results obtained onto MUSE image quality and throughput directly onto the sky.

Effect of Acoustic Spectrographic Instruction on Production of English /i/ and /I/ by Spanish Pre-Service English Teachers

ERIC Educational Resources Information Center

Quintana-Lara, Marcela

2014-01-01

This study investigates the effects of Acoustic Spectrographic Instruction on the production of the English phonological contrast /i/ and / I /. Acoustic Spectrographic Instruction is based on the assumption that physical representations of speech sounds and spectrography allow learners to objectively see and modify those non-accurate features in…

Brief report on the United States Food and Drug Administration Blood Products Advisory Committee recommendations for management of donors and units testing positive for hepatitis B virus DNA.

PubMed

Lucey, C

2006-11-01

This article briefly recounts the 21st July 2005, Blood Products Advisory Committee (BPAC) meeting concerning recommendations for management of donors and units testing positive for hepatitis B virus (HBV) DNA. The author attended the meeting. The United States Food and Drug Administration (FDA) web site was used for meeting materials, and handouts were collected at the meeting to provide narrative information. Two European experts assisted with HBV subject matter. The proceedings of the advisory committee, the issue briefing materials, and testing algorithms are presented. BPAC voted concurrence with the FDA algorithm for Management of Donors and Units Testing Positive for Hepatitis B Virus DNA.

Update: Influenza Activity - United States, October 1-November 25, 2017.

PubMed

Dugan, Vivien G; Blanton, Lenee; Elal, Anwar Isa Abd; Alabi, Noreen; Barnes, John; Brammer, Lynnette; Burns, Erin; Cummings, Charisse N; Davis, Todd; Flannery, Brendan; Fry, Alicia M; Garg, Shikha; Garten, Rebecca; Gubareva, Larisa; Jang, Yunho; Kniss, Krista; Kramer, Natalie; Lindstrom, Stephen; Mustaquim, Desiree; O'Halloran, Alissa; Olsen, Sonja J; Sessions, Wendy; Taylor, Calli; Trock, Susan; Xu, Xiyan; Wentworth, David E; Katz, Jacqueline; Jernigan, Daniel

2017-12-08

Influenza activity in the United States was low during October 2017, but has been increasing since the beginning of November. Influenza A viruses have been most commonly identified, with influenza A(H3N2) viruses predominating. Several influenza activity indicators were higher than is typically seen for this time of year. The majority of influenza viruses characterized during this period were genetically or antigenically similar to the 2017-18 Northern Hemisphere cell-grown vaccine reference viruses. These data indicate that currently circulating viruses have not undergone significant antigenic drift; however, circulating A(H3N2) viruses are antigenically less similar to egg-grown A(H3N2) viruses used for producing the majority of influenza vaccines in the United States. It is difficult to predict which influenza viruses will predominate in the 2017-18 influenza season; however, in recent past seasons in which A(H3N2) viruses predominated, hospitalizations and deaths were more common, and the effectiveness of the vaccine was lower. Annual influenza vaccination is recommended for all persons aged ≥6 months who do not have contraindications. Multiple influenza vaccines are approved and recommended for use during the 2017-18 season, and vaccination should continue to be offered as long as influenza viruses are circulating and unexpired vaccine is available. This report summarizes U.S. influenza activity* during October 1-November 25, 2017 (surveillance weeks 40-47). † .

Culicoides-virus interactions: infection barriers and possible factors underlying vector competence

USDA-ARS?s Scientific Manuscript database

In the United States, Culicoides midges vector arboviruses of economic importance such as Bluetongue Virus and Epizootic Hemorrhagic Disease Virus. A limited number of studies have demonstrated the complexities of midge-virus interactions, including dynamic changes in virus titer and prevalence over...

Induction of Mucosal and Systemic Immunity to a Recombinant Simian Immunodeficiency Viral Protein

NASA Astrophysics Data System (ADS)

Lehner, T.; Bergmeier, L. A.; Panagiotidi, C.; Tao, L.; Brookes, R.; Klavinskis, L. S.; Walker, P.; Walker, J.; Ward, R. G.; Hussain, L.; Gearing, A. J. H.; Adams, S. E.

1992-11-01

Heterosexual transmission through the cervico-vaginal mucosa is the principal route of human immunodeficiency virus (HIV) infection in Africa and is increasing in the United States and Europe. Vaginal immunization with simian immunodeficiency virus (SIV) had not yet been studied in nonhuman primates. Immune responses in macaques were investigated by stimulation of the genital and gut-associated lymphoid tissue with a recombinant, particulate SIV antigen. Vaginal, followed by oral, administration of the vaccine elicited three types of immunity: (i) gag protein p27-specific, secretory immunoglobulin A (IgA) and immunoglobulin G (IgG) in the vaginal fluid, (ii) specific CD4^+ T cell proliferation and helper function in B cell p27-specific IgA synthesis in the genital lymph nodes, and (iii) specific serum IgA and IgG, with CD4^+ T cell proliferative and helper functions in the circulating blood.

Sky Subtraction with Fiber-Fed Spectrograph

NASA Astrophysics Data System (ADS)

Rodrigues, Myriam

2017-09-01

"Historically, fiber-fed spectrographs had been deemed inadequate for the observation of faint targets, mainly because of the difficulty to achieve high accuracy on the sky subtraction. The impossibility to sample the sky in the immediate vicinity of the target in fiber instruments has led to a commonly held view that a multi-object fibre spectrograph cannot achieve an accurate sky subtraction under 1% contrary to their slit counterpart. The next generation of multi-objects spectrograph at the VLT (MOONS) and the planed MOS for the E-ELT (MOSAIC) are fiber-fed instruments, and are aimed to observed targets fainter than the sky continuum level. In this talk, I will present the state-of-art on sky subtraction strategies and data reduction algorithm specifically developed for fiber-fed spectrographs. I will also present the main results of an observational campaign to better characterise the sky spatial and temporal variations ( in particular the continuum and faint sky lines)."

The FIREBall fiber-fed UV spectrograph

NASA Astrophysics Data System (ADS)

Tuttle, Sarah E.; Schiminovich, David; Milliard, Bruno; Grange, Robert; Martin, D. Christopher; Rahman, Shahinur; Deharveng, Jean-Michel; McLean, Ryan; Tajiri, Gordon; Matuszewski, M.

2008-07-01

FIREBall (Faint Intergalactic Redshifted Emission Balloon) had a successful first engineering flight in July of 2007 from Palestine, Texas. Here we detail the design and construction of the spectrograph. FIREBall consists of a 1m telescope coupled to a fiber-fed ultraviolet spectrograph flown on a short duration balloon. The spectrograph is designed to map hydrogen and metal line emission from the intergalactic medium at several redshifts below z=1, exploiting a small window in atmospheric oxygen absorption at balloon altitudes. The instrument is a wide-field IFU fed by almost 400 fibers. The Offner mount spectrograph is designed to be sensitive in the 195-215nm window accessible at our altitudes of 35-40km. We are able to observe Lyα, as well as OVI and CIV doublets, from 0.3 < z < 0.9. Observations of UV bright B stars and background measurements allow characterization of throughput for the entire system and will inform future flights.

Sindbis virus proteins nsP1 and nsP2 contain homology to nonstructural proteins from several RNA plant viruses.

PubMed Central

Ahlquist, P; Strauss, E G; Rice, C M; Strauss, J H; Haseloff, J; Zimmern, D

1985-01-01

Although the genetic organization of tobacco mosaic virus (TMV) differs considerably from that of the tripartite viruses (alfalfa mosaic virus [AlMV] and brome mosaic virus [BMV]), all of these RNA plant viruses share three domains of homology among their nonstructural proteins. One such domain, common to the AlMV and BMV 2a proteins and the readthrough portion of TMV p183, is also homologous to the readthrough protein nsP4 of Sindbis virus (Haseloff et al., Proc. Natl. Acad. Sci. U.S.A. 81:4358-4362, 1984). Two more domains are conserved among the AlMV and BMV 1a proteins and TMV p126. We show here that these domains have homology with portions of the Sindbis proteins nsP1 and nsP2, respectively. These results strengthen the view that the four viruses share mechanistic similarities in their replication strategies and may be evolutionarily related. These results also suggest that either the AlMV 1a, BMV 1a, and TMV p126 proteins are multifunctional or Sindbis proteins nsP1 and nsP2 function together as subunits in a single complex. PMID:3968720

Analysis of Proteins of Mouse Sarcoma Pseudotype Viruses: Type-Specific Radioimmunoassays for Ecotropic Virus p30's

PubMed Central

Kennel, Stephen J.; Tennant, Raymond W.

1979-01-01

Murine sarcoma virus pseudotypes were prepared by infection of nonproducer cells (A1-2), which were transformed by the Gazdar strain of mouse sarcoma virus, with Gross (N-tropic), WN1802B (B-tropic), or Moloney (NB-tropic) viruses. The respective host range pseudotype sarcoma viruses were defined by the titration characteristics on cells with the appropriate Fv-1 genotype. Proteins from virus progeny were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Bands present in both the 65,000- and the 10,000- to 20,000- molecular-weight regions of the gel distinguished the pseudotype viruses from their respective helpers. Furthermore, two protein bands were noted in the p30 region of murine sarcoma virus (Gross), one corresponding to Gross virus p30, and another of slightly slower mobility. However, since the mobility of the putative sarcoma p30 is nearly indentical to that of WN1802B, its presence could not be established by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Type-specific radioimmunoassays for Gross virus p30 and for WN1802B p30 were applied for analysis of pseudotype preparations, and among several ecotropic viruses tested, only the homologous virus scored in the respective assay. By use of these assays, pseudotype viruses were found to contain only 8 to 48% helper-specific p30's; the remainder is presumably derived from the sarcoma virus. Images PMID:90164

Infection with Colorado tick fever virus among humans and ticks in a national park and forest, Wyoming, 2010.

PubMed

Geissler, Aimee L; Thorp, Emily; Van Houten, Clayton; Lanciotti, Robert S; Panella, Nicolas; Cadwell, Betsy L; Murphy, Tracy; Staples, J Erin

2014-09-01

Colorado tick fever (CTF) is an underreported tick-borne viral disease occurring in the western United States. CTF illness includes fever, headache, and severe myalgia lasting for weeks. Wyoming has one of the highest CTF incidence rates with approximately 30% of infected persons reporting tick exposure in a Wyoming National Park or Forest before symptom onset. We assessed CTF virus infections among humans and Dermacentor andersoni ticks in Grand Teton National Park (GRTE) and Bridger-Teton National Forest (BTNF). In June of 2010, 526 eligible employees were approached to participate in a baseline and 3-month follow-up serosurvey and risk behavior survey. Seropositivity was defined as antibody titers against CTF virus ≥10, as measured by the plaque reduction neutralization test. Ticks were collected at 27 sites within GRTE/BTNF and tested by RT-PCR for the CTF virus. A total of 126 (24%) employees participated in the baseline and follow-up study visits. Three (2%) employees were seropositive for CTF virus infection at baseline. During the study, 47 (37%) participants found unattached ticks on themselves, and 12 (10%) found attached ticks; however, no participants seroconverted against CTF virus. Walking through sagebrush (p=0.04) and spending time at ≥7000 feet elevation (p<0.01) were significantly associated with tick exposure. Ninety-nine percent (174/176) of ticks were D. andersoni, and all were found at ≥7000 feet elevation in sagebrush areas; 37 (21%) ticks tested positive for CTF virus and were found at 10 (38%) of 26 sites sampled. Although no GRTE or BTNF employees were infected with CTF virus during the study period, high rates of infected ticks were identified in areas with sagebrush at ≥7000 feet. CTF education and personal protection measures against tick exposure should be targeted to visitors and employees traveling to the high-risk environs identified in this study.

Influenza A Subtype H3 Viruses in Feral Swine, United States, 2011–2012

PubMed Central

Feng, Zhixin; Baroch, John A.; Long, Li-Ping; Xu, Yifei; Cunningham, Frederick L.; Pedersen, Kerri; Lutman, Mark W.; Schmit, Brandon S.; Bowman, Andrew S.; DeLiberto, Thomas J.

2014-01-01

To determine whether, and to what extent, influenza A subtype H3 viruses were present in feral swine in the United States, we conducted serologic and virologic surveillance during October 2011–September 2012. These animals were periodically exposed to and infected with A(H3N2) viruses, suggesting they may threaten human and animal health. PMID:24751326

The pathogenesis of H7N8 low and highly pathogenic avian influenza viruses from the United States 2016 outbreak in chickens, turkeys and mallards

USDA-ARS?s Scientific Manuscript database

In January 2016, a combined outbreak of highly pathogenic (HP) avian influenza virus (AIV) and low pathogenicity (LP) AIV occurred in commercial turkeys in the state of Indiana, United States. Genetically, the viruses were highly similar, belonged to the North American wild bird lineage, and had not...

Monoclonal antibodies of African swine fever virus: antigenic differences among field virus isolates and viruses passaged in cell culture.

PubMed Central

García-Barreno, B; Sanz, A; Nogal, M L; Viñuela, E; Enjuanes, L

1986-01-01

An analysis of the binding properties of a collection of monoclonal antibodies to African swine fever virus particles showed that virus field isolates passaged in porcine macrophages changed antigenically more than a strain of a cell-adapted virus passaged in Vero cells. From seven clones isolated from the spleen of a field-infected pig, we found four clones that had the same antigenic properties, one clone that had large changes in proteins p150 and p27 and small changes in proteins p37 and p14, and two clones that had minor changes in proteins p150 and p27, respectively. An analysis of the binding properties of the monoclonal antibodies to 23 field isolates from Africa, Europe, and America showed that the African isolates differed among themselves more than the European and the American isolates; in this study we found changes in 8 of the 10 virus proteins tested. The most variable proteins in the African isolates were p150, p27, p14, and p12. In contrast to the African isolates, protein p12 from the non-African viruses did not change. The clustering of the field virus isolates in six antigenic homology groups indicated the existence of a complex variety of African swine fever virus serotypes. PMID:2422393

Epstein–Barr virus glycoprotein gM can interact with the cellular protein p32 and knockdown of p32 impairs virus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Changotra, Harish; Turk, Susan M.; Artigues, Antonio

The Epstein–Barr virus glycoprotein complex gMgN has been implicated in assembly and release of fully enveloped virus, although the precise role that it plays has not been elucidated. We report here that the long predicted cytoplasmic tail of gM is not required for complex formation and that it interacts with the cellular protein p32, which has been reported to be involved in nuclear egress of human cytomegalovirus and herpes simplex virus. Although redistribution of p32 and colocalization with gM was not observed in virus infected cells, knockdown of p32 expression by siRNA or lentivirus-delivered shRNA recapitulated the phenotype of amore » virus lacking expression of gNgM. A proportion of virus released from cells sedimented with characteristics of virus lacking an intact envelope and there was an increase in virus trapped in nuclear condensed chromatin. The observations suggest the possibility that p32 may also be involved in nuclear egress of Epstein–Barr virus. - Highlights: • The predicted cytoplasmic tail of gM is not required to complex with gN. • Cellular p32 can interact with the predicted cytoplasmic tail of EBV gM. • Knockdown of p32 recapitulates the phenotype of virus lacking the gNgM complex.« less

A Student Assembled Spectrograph with a CCD Detector to Assist with Students' Understanding of Spectrometry

ERIC Educational Resources Information Center

Grove, T. T.; Masters, M. F.

2007-01-01

To help students develop an understanding of the proper use and function of spectrographs and monochromators we describe a student-assembled spectrograph using a "webcam" detector. The apparatus also works well as a low-cost demonstration, helping students make connections between an atomic spectrum observed by eye and a plot of the relative…

Effect of Training Japanese L1 Speakers in the Production of American English /r/ Using Spectrographic Visual Feedback

ERIC Educational Resources Information Center

Patten, Iomi; Edmonds, Lisa A.

2015-01-01

The present study examines the effects of training native Japanese speakers in the production of American /r/ using spectrographic visual feedback. Within a modified single-subject design, two native Japanese participants produced single words containing /r/ in a variety of positions while viewing live spectrographic feedback with the aim of…

X-ray spectrographic determination of cesium and rubidium

USGS Publications Warehouse

Axelrod, J.M.; Adler, I.

1957-01-01

An x-ray spectrographic method for the determination of rubidium and cesium was developed, using the internal-standard method and a four-channel flat-crystal spectrograph. The sensitivity is within 0.1% for cesia and 0.02% for rubidia; the precision is within 10% of the amount present. Results agree well with those obtained by flame photometry and by radio-activation.

Scientific Design of a High Contrast Integral Field Spectrograph for the Subaru Telescope

NASA Technical Reports Server (NTRS)

McElwain, Michael W.

2012-01-01

Ground based telescopes equipped with adaptive optics systems and specialized science cameras are now capable of directly detecting extrasolar planets. We present the scientific design for a high contrast integral field spectrograph for the Subaru Telescope. This lenslet based integral field spectrograph will be implemented into the new extreme adaptive optics system at Subaru, called SCExAO.

Thirty-Meter Telescope: A Technical Study of the InfraRed Multiobject Spectrograph

NASA Astrophysics Data System (ADS)

U, Vivian; Dekany, R.; Mobasher, B.

2013-01-01

The InfraRed Multiobject Spectrograph (IRMS) is an adaptive optics (AO)-fed, reconfigurable near-infrared multi-object spectrograph and imager on the Thirty Meter Telescope (TMT). Its design is based on the MOSFIRE spectrograph currently operating on the Keck Observatory. As one of the first three first-light instruments on the TMT, IRMS is in a mini-conceptual design phase. Here we motivate the science goals of the instrument and present the anticipated sensitivity estimates based on the combination of MOSFIRE with the AO system NFIRAOS on TMT. An assessment of the IRMS on-instrument wavefront sensor performance and vignetting issue will also be discussed.

VizieR Online Data Catalog: The ELM survey. VII. 15 new ELM white dwarf cand. (Brown+, 2016)

NASA Astrophysics Data System (ADS)

Brown, W. R.; Gianninas, A.; Kilic, M.; Kenyon, S. J.; Allende Prieto, C.

2016-05-01

We present observations of 15 new extremely low-mass white dwarf (ELM WD) candidates. Ten objects are selected by color for our targeted spectroscopic ELM Survey program as described in Brown et al. (2012ApJ...744..142B). Five objects come from follow-up spectroscopy of the completed Hypervelocity Star survey. We acquire spectra for the 15 ELM WD candidates using the Blue Channel spectrograph on the 6.5m MMT telescope. We configured the Blue Channel spectrograph to obtain 3650-4500Å spectral coverage with 1.0Å spectral resolution. We acquire additional spectra for 5 objects using the KOSMOS spectrograph on the Kitt Peak National Observatory 4m Mayall telescope on program numbers 2014B-0119 and 2015A-0082. We configured the KOSMOS spectrograph to obtain 3500-6200Å spectral coverage with 2.0Å spectral resolution. We also acquire spectra for objects with g<17mag using the FAST spectrograph on the Fred Lawrence Whipple Observatory 1.5m Tillinghast telescope. We configured the FAST spectrograph to obtain 3500-5500Å spectral coverage with 1.7Å spectral resolution. (3 data files).

Effects of sanitation, freezing and frozen storage on enteric viruses in berries and herbs.

PubMed

Butot, S; Putallaz, T; Sánchez, G

2008-08-15

Norovirus (NV) and hepatitis A virus (HAV) are foodborne enteric viruses associated with outbreaks of disease following consumption of fresh or frozen produce. Model experiments were performed to determine the effectiveness of certain commercial processes for the removal of enteric viruses that might be present in berries and herbs. The survival and persistence of HAV, NV, rotavirus (RV) and feline calicivirus (FCV), a surrogate for NV, in frozen produce over time were determined. Survival and inactivation of HAV, RV and FCV were assessed by viral culture and quantitative reverse transcription-PCR (RT-PCR), whereas NV persistence was determined by quantitative RT-PCR only. Freezing did not significantly reduce the viability of any of the viruses except the infectivity of FCV in strawberries. Frozen storage for 3 months had limited effects on HAV and RV survival in all tested food products, whereas in frozen raspberries and strawberries FCV infectivity showed the highest decay rate due to acid pH. To simulate postharvesting conditions, fresh berries and herbs were rinsed with tap, warm or chlorinated water or with a chlorine dioxide (ClO(2)) solution. Available chlorine at a concentration of 200 ppm and ClO(2) at 10 ppm reduced measurable enteric viruses in raspberry and parsley samples by less than 2 log(10) units.

Efficiency of several micro-fiber glass filters for recovery of poliovirus from tape water.

PubMed Central

Payment, P; Trudel, M

1979-01-01

Micro-fiber glass filters from Gelman, Filterite, Johns-Manville, and Whatman were compared with Millipore membrane filters on the basis of their virus adsorbancy, flow rate, clogging resistance, and virus concentration efficiency by using tap water at 2 nephelometric turbidity units. As virus adsorbants the Johns-Manville D39, Filterite 0.25-micron, Filterite 0.45-micron, and Millipore 0.45-micron filters were the most efficient, retaining more than 99% of the added virus in water at pH 3.5 and 0.0005 M aluminum chloride. The Johns-Manville D79 and D49 filters retained 92 and 96% of the virus, respectively, whereas the Whatman GF-D, Whatman GF-F, Gelman A-E, and Millipore AP-20 filters retained only 28, 78, 56, and 34% of the virus, respectively. The best flow rate and clogging resistance were obtained with the Johns-Manville D79 filter or with this filter acting as a prefilter to the Johns-Manville D49, Johns-Manville D39, or Filterite 0.45-micron filter. Finally, poliovirus experimentally seeded in 20 liters of tape water was recovered from Johns-Manville D79-Johns-Manville D39 or Johns-Manville D79-Filterite 0.45 micron 142-mm filter combinations was a efficiencies of 86 and 85%, respectively. PMID:231414

Focal-surface detector for heavy ions

DOEpatents

Erskine, John R.; Braid, Thomas H.; Stoltzfus, Joseph C.

1979-01-01

A detector of the properties of individual charged particles in a beam includes a gridded ionization chamber, a cathode, a plurality of resistive-wire proportional counters, a plurality of anode sections, and means for controlling the composition and pressure of gas in the chamber. Signals generated in response to the passage of charged particles can be processed to identify the energy of the particles, their loss of energy per unit distance in an absorber, and their angle of incidence. In conjunction with a magnetic spectrograph, the signals can be used to identify particles and their state of charge. The detector is especially useful for analyzing beams of heavy ions, defined as ions of atomic mass greater than 10 atomic mass units.

The Solar Spectrum 3069A-2095A from the Echelle Spectrograph Flown in 1961-1964. An Extension of Rowland’s Preliminary Table of Solar Spectrum Wavelengths.

DTIC Science & Technology

1982-12-30

Brown S. PERFORMING ORGANIZATION NAME AND ADORESS 10. PROGRAM ELEMENT. PROJECT TASK AREA & WORK UNIT NUMBERS Naval Research Laboratory 61153N...laboratory wavelengths and lished work available to mid-1981. Predicted wavelengths intensities. Although the dispersion was not constant have been used where...solar ledger. Throughout the identification work , how- Multiplet numbers (column 4) are taken from three ever, multiplet structure was considered in

Development of a SYBR Green I real-time PCR for detection and quantitation of orthopoxvirus by using Ectromelia virus.

PubMed

Cheng, Wenyu; He, Xiaobing; Jia, Huaijie; Chen, Guohua; Wang, Cong; Zhang, Jun; Jing, Zhizhong

2018-04-01

Ectromelia virus (ECTV) is the causative agent of mousepox, which has devastating effects in laboratory-mouse colonies and causes economic loss in biomedical research. More importantly, ECTV has been extensively used as an excellent model for studies of the pathogenesis and immunobiology of human smallpox. A rapid and sensitive SYBR Green I-based real-time PCR assay was developed and used for the detection and quantitation of orthopoxvirus by using ECTV in this study. Primers targeted to the highly conserved region of major core protein P4b gene of orthopoxvirus were designed and the standard plasmid was constructed. This assay was able to detect a minimum of 10 copies of standard DNA and 5 TCID 50 units of ECTV. In addition, no cross-reactions were observed with two DNA viruses, such as herpes simplex virus and swine pseudorabies virus, and one RNA virus, vesicular stomatitis virus. Furthermore, intra- and inter-assay variability data showed that this method had a highly reproducibility and reliability. Moreover, the current assay was faster and had a higher sensitivity for detection of ECTV genomic DNA in cell cultured and clinical test samples. Therefore, the high sensitivity and reproducibility of this SYBR Green real-time PCR approach is a more effective method than the conventional PCR for ECTV diagnosis and quantitation. Copyright © 2017. Published by Elsevier Ltd.

Single Mode, Extreme Precision Doppler Spectrographs

NASA Astrophysics Data System (ADS)

Schwab, Christian; Leon-Saval, Sergio G.; Betters, Christopher H.; Bland-Hawthorn, Joss; Mahadevan, Suvrath

2014-04-01

The `holy grail' of exoplanet research today is the detection of an earth-like planet: a rocky planet in the habitable zone around a main-sequence star. Extremely precise Doppler spectroscopy is an indispensable tool to find and characterize earth-like planets; however, to find these planets around solar-type stars, we need nearly one order of magnitude better radial velocity (RV) precision than the best current spectrographs provide. Recent developments in astrophotonics (Bland-Hawthorn & Horton 2006, Bland-Hawthorn et al. 2010) and adaptive optics (AO) enable single mode fiber (SMF) fed, high resolution spectrographs, which can realize the next step in precision. SMF feeds have intrinsic advantages over multimode fiber or slit coupled spectrographs: The intensity distribution at the fiber exit is extremely stable, and as a result the line spread function of a well-designed spectrograph is fully decoupled from input coupling conditions, like guiding or seeing variations (Ihle et al. 2010). Modal noise, a limiting factor in current multimode fiber fed instruments (Baudrand & Walker 2001), can be eliminated by proper design, and the diffraction limited input to the spectrograph allows for very compact instrument designs, which provide excellent optomechanical stability. A SMF is the ideal interface for new, very precise wavelength calibrators, like laser frequency combs (Steinmetz et al. 2008, Osterman et al. 2012), or SMF based Fabry-Perot Etalons (Halverson et al. 2013). At near infrared wavelengths, these technologies are ready to be implemented in on-sky instruments, or already in use. We discuss a novel concept for such a spectrograph.

Humans and ferrets with prior H1N1 influenza virus infections do not exhibit evidence of original antigenic sin after infection or vaccination with the 2009 pandemic H1N1 influenza virus.

PubMed

O'Donnell, Christopher D; Wright, Amber; Vogel, Leatrice; Boonnak, Kobporn; Treanor, John J; Subbarao, Kanta

2014-05-01

The hypothesis of original antigenic sin (OAS) states that the imprint established by an individual's first influenza virus infection governs the antibody response thereafter. Subsequent influenza virus infection results in an antibody response against the original infecting virus and an impaired immune response against the newer influenza virus. The purpose of our study was to seek evidence of OAS after infection or vaccination with the 2009 pandemic H1N1 (2009 pH1N1) virus in ferrets and humans previously infected with H1N1 viruses with various antigenic distances from the 2009 pH1N1 virus, including viruses from 1935 through 1999. In ferrets, seasonal H1N1 priming did not diminish the antibody response to infection or vaccination with the 2009 pH1N1 virus, nor did it diminish the T-cell response, indicating the absence of OAS in seasonal H1N1 virus-primed ferrets. Analysis of paired samples of human serum taken before and after vaccination with a monovalent inactivated 2009 pH1N1 vaccine showed a significantly greater-fold rise in the titer of antibody against the 2009 pH1N1 virus than against H1N1 viruses that circulated during the childhood of each subject. Thus, prior experience with H1N1 viruses did not result in an impairment of the antibody response against the 2009 pH1N1 vaccine. Our data from ferrets and humans suggest that prior exposure to H1N1 viruses did not impair the immune response against the 2009 pH1N1 virus.

Humans and Ferrets with Prior H1N1 Influenza Virus Infections Do Not Exhibit Evidence of Original Antigenic Sin after Infection or Vaccination with the 2009 Pandemic H1N1 Influenza Virus

PubMed Central

O'Donnell, Christopher D.; Wright, Amber; Vogel, Leatrice; Boonnak, Kobporn; Treanor, John J.

2014-01-01

The hypothesis of original antigenic sin (OAS) states that the imprint established by an individual's first influenza virus infection governs the antibody response thereafter. Subsequent influenza virus infection results in an antibody response against the original infecting virus and an impaired immune response against the newer influenza virus. The purpose of our study was to seek evidence of OAS after infection or vaccination with the 2009 pandemic H1N1 (2009 pH1N1) virus in ferrets and humans previously infected with H1N1 viruses with various antigenic distances from the 2009 pH1N1 virus, including viruses from 1935 through 1999. In ferrets, seasonal H1N1 priming did not diminish the antibody response to infection or vaccination with the 2009 pH1N1 virus, nor did it diminish the T-cell response, indicating the absence of OAS in seasonal H1N1 virus-primed ferrets. Analysis of paired samples of human serum taken before and after vaccination with a monovalent inactivated 2009 pH1N1 vaccine showed a significantly greater-fold rise in the titer of antibody against the 2009 pH1N1 virus than against H1N1 viruses that circulated during the childhood of each subject. Thus, prior experience with H1N1 viruses did not result in an impairment of the antibody response against the 2009 pH1N1 vaccine. Our data from ferrets and humans suggest that prior exposure to H1N1 viruses did not impair the immune response against the 2009 pH1N1 virus. PMID:24648486

Co-infection and disease severity of Ohio Maize dwarf mosaic virus and Maize chlorotic dwarf virus strains

USDA-ARS?s Scientific Manuscript database

Two major maize viruses have been reported in the United States: Maize dwarf mosaic virus (MDMV) and Maize chlorotic dwarf virus (MCDV). These viruses co-occur in regions where maize is grown such that co-infections are likely. Co-infection of different strains of MCDV is also observed frequently...

CARMENES: First Results from the CAHA 3.5m Telescope

NASA Astrophysics Data System (ADS)

Quirrenbach, Andreas; Consortium, CARMENES

2015-12-01

CARMENES (Calar Alto high-Resolution search for M dwarfs with Exo-earths with Near-infrared and optical Echelle Spectrographs) is a next-generation instrument currently undergoing commissioning at the 3.5m telescope at the Calar Alto Observatory. It has been developed by a consortium of eleven Spanish and German institutions (see also Quirrenbach et al. 2010; 2012; 2014). CARMENES will conduct a 600-night exoplanet survey targeting ~300 M dwarfs. An important and unique feature of the CARMENES instrument is that it consists of two separate échelle spectrographs, which together cover the wavelength range from 0.55 to 1.7 μm at a spectral resolution of R = 82,000. The spectrographs are fed by fibers from the Cassegrain focus of the telescope.The main scientific objective of the CARMENES project is to carry out a survey of late-type main sequence stars with the goal of detecting low-mass planets in their habitable zones (HZs). In the focus of the project are very cool stars later than spectral type M4 and moderately active stars. We aim at being able to detect a 2M⊕ planet in the HZ of an M5 star. A long-term radial velocity precision of 1ms-1 per measurement will permit to attain such goals. For stars later than M4 (M < 0.25M⊙), such precision will yield detections of super-Earths of 5M⊕ and smaller inside the entire width of the HZ. The CARMENES survey will thus provide a comprehensive overview of planetary systems around nearby Northern M dwarfs. By reaching into the realm of Earth-like planets, it will provide a treasure trove for follow-up studies probing their habitability.Quirrenbach, A., Amado, P.J., Mandel, H., et al. (2010). CARMENES: Calar Alto high-Resolution search for M dwarfs with Exo-earths with Near-infrared and optical Echelle Spectrographs. In Ground-based and airborne instrumentation for astronomy III. Eds. McLean, I.S., Ramsay, S.K., & Takami, H., SPIE 773513Quirrenbach, A., Amado, P.J., Seifert, W., et al. (2012). CARMENES. I: Instrument and survey overview. In Ground-based and airborne instrumentation for astronomy IV. Eds. McLean, I.S., Ramsay, S.K., & Takami, H., SPIE 84460RQuirrenbach, A., Amado, P.J., Caballero, J.A., et al. (2014). CARMENES instrument overview. In Ground-based and airborne instrumentation for astronomy V. Eds. Ramsay, S.K., McLean, I.S., & Takami, H., SPIE 91471F

Severity of Respiratory Syncytial Virus Lower Respiratory Tract Infection With Viral Coinfection in HIV-Uninfected Children

PubMed Central

Mazur, Natalie I.; Bont, Louis; Cohen, Adam L.; Cohen, Cheryl; von Gottberg, Anne; Groome, Michelle J.; Hellferscee, Orienka; Klipstein-Grobusch, Kerstin; Mekgoe, Omphile; Naby, Fathima; Moyes, Jocelyn; Tempia, Stefano; Treurnicht, Florette K.; Venter, Marietje; Walaza, Sibongile; Wolter, Nicole; Madhi, Shabir A.

2017-01-01

Background Molecular diagnostics enable sensitive detection of respiratory viruses, but their clinical significance remains unclear in pediatric lower respiratory tract infection (LRTI). We aimed to determine whether viral coinfections increased life-threatening disease in a large cohort. Methods Molecular testing was performed for respiratory viruses in nasopharyngeal aspirates collected from children aged <5 years within 24 hours of hospital admission during sentinel surveillance for severe acute respiratory illness (SARI) hospitalization conducted in South Africa during February 2009–December 2013. The primary outcome was life-threatening disease, defined as mechanical ventilation, intensive care unit admission, or death. Results Of 2322 HIV-uninfected children with respiratory syncytial virus (RSV)–associated LRTI, 1330 (57.3%) had RSV monoinfection, 38 (1.6%) had life-threatening disease, 575 (24.8%) had rhinovirus, 347 (14.9%) had adenovirus (ADV), and 30 (1.3%) had influenza virus. RSV and any other viral coinfection was not associated with severe disease (odds ratio [OR], 1.4; 95% confidence interval [CI], OR, 0.74; 95% CI, .39–1.4), ADV coinfection had increased odds of life-threatening disease (adjusted OR, 3.4; 95% CI, 1.6–7.2; P = .001), and influenza coinfection had increased odds of life-threatening disease and prolonged length of stay (adjusted OR, 2.1; 95% CI, 1.0–4.5; P = .05) compared with RSV monoinfection. Conclusions RSV coinfection with any respiratory virus is not associated with more severe disease when compared to RSV alone in this study. However, increased life-threatening disease in RSV-ADV and RSV-influenza coinfection warrants further study. PMID:27927871

Severity of Respiratory Syncytial Virus Lower Respiratory Tract Infection With Viral Coinfection in HIV-Uninfected Children.

PubMed

Mazur, Natalie I; Bont, Louis; Cohen, Adam L; Cohen, Cheryl; von Gottberg, Anne; Groome, Michelle J; Hellferscee, Orienka; Klipstein-Grobusch, Kerstin; Mekgoe, Omphile; Naby, Fathima; Moyes, Jocelyn; Tempia, Stefano; Treurnicht, Florette K; Venter, Marietje; Walaza, Sibongile; Wolter, Nicole; Madhi, Shabir A

2017-02-15

Molecular diagnostics enable sensitive detection of respiratory viruses, but their clinical significance remains unclear in pediatric lower respiratory tract infection (LRTI). We aimed to determine whether viral coinfections increased life-threatening disease in a large cohort. Molecular testing was performed for respiratory viruses in nasopharyngeal aspirates collected from children aged <5 years within 24 hours of hospital admission during sentinel surveillance for severe acute respiratory illness (SARI) hospitalization conducted in South Africa during February 2009-December 2013. The primary outcome was life-threatening disease, defined as mechanical ventilation, intensive care unit admission, or death. Of 2322 HIV-uninfected children with respiratory syncytial virus (RSV)-associated LRTI, 1330 (57.3%) had RSV monoinfection, 38 (1.6%) had life-threatening disease, 575 (24.8%) had rhinovirus, 347 (14.9%) had adenovirus (ADV), and 30 (1.3%) had influenza virus. RSV and any other viral coinfection was not associated with severe disease (odds ratio [OR], 1.4; 95% confidence interval [CI], OR, 0.74; 95% CI, .39-1.4), ADV coinfection had increased odds of life-threatening disease (adjusted OR, 3.4; 95% CI, 1.6-7.2; P = .001), and influenza coinfection had increased odds of life-threatening disease and prolonged length of stay (adjusted OR, 2.1; 95% CI, 1.0-4.5; P = .05) compared with RSV monoinfection. RSV coinfection with any respiratory virus is not associated with more severe disease when compared to RSV alone in this study. However, increased life-threatening disease in RSV-ADV and RSV-influenza coinfection warrants further study. © The Author 2016. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

Comparison of the structures of three circoviruses: chicken anemia virus, porcine circovirus type 2, and beak and feather disease virus.

PubMed

Crowther, R A; Berriman, J A; Curran, W L; Allan, G M; Todd, D

2003-12-01

Circoviruses are small, nonenveloped icosahedral animal viruses characterized by circular single-stranded DNA genomes. Their genomes are the smallest possessed by animal viruses. Infections with circoviruses, which can lead to economically important diseases, frequently result in virus-induced damage to lymphoid tissue and immunosuppression. Within the family Circoviridae, different genera are distinguished by differences in genomic organization. Thus, Chicken anemia virus is in the genus Gyrovirus, while porcine circoviruses and Beak and feather disease virus belong to the genus CIRCOVIRUS: Little is known about the structures of circoviruses. Accordingly, we investigated the structures of these three viruses with a view to determining whether they are related. Three-dimensional maps computed from electron micrographs showed that all three viruses have a T=1 organization with capsids formed from 60 subunits. Porcine circovirus type 2 and beak and feather disease virus show similar capsid structures with flat pentameric morphological units, whereas chicken anemia virus has stikingly different protruding pentagonal trumpet-shaped units. It thus appears that the structures of viruses in the same genus are related but that those of viruses in different genera are unrelated.

Influenza-associated intensive-care unit admissions and deaths - California, September 29, 2013-January 18, 2014.

PubMed

Ayscue, Patrick; Murray, Erin; Uyeki, Timothy; Zipprich, Jennifer; Harriman, Kathleen; Salibay, Catheryn; Kang, Monica; Luu, Annie; Glenn-Finer, Rose; Watt, James; Glaser, Carol; Louie, Janice

2014-02-21

The California Department of Public Health (CDPH) conducts surveillance on severe influenza illness among California residents aged <65 years. Severe cases are defined as those resulting in admission to an intensive care unit (ICU) or death; reporting of ICU cases is voluntary, and reporting of fatal cases is mandatory. This report describes the epidemiologic, laboratory, and clinical characteristics of ICU and fatal influenza cases with symptom onset on or after September 29, 2013, and reported by January 18, 2014 of the 2013-14 influenza season. At the time of this report, local health jurisdictions (LHJs) in California had reported 94 deaths and 311 ICU admissions of patients with a positive influenza test result. The 405 reports of severe cases (i.e., fatal and ICU cases combined) were more than in any season since the 2009 pandemic caused by the influenza A (H1N1)pdm09 (pH1N1) virus. The pH1N1 virus is the predominant circulating influenza virus this season. Of 405 ICU and fatal influenza cases, 266 (66%) occurred among patients aged 41-64 years; 39 (10%) severe influenza illnesses occurred among children aged <18 years. Only six (21%) of 28 patients with fatal illness whose vaccination status was known had received 2013-14 seasonal influenza vaccine ≥2 weeks before symptom onset. Of 80 patients who died for whom sufficient information was available, 74 (93%) had underlying medical conditions known to increase the risk for severe influenza, as defined by the Advisory Committee on Immunization Practices (ACIP). Of 47 hospitalized patients with fatal illness and known symptom onset and antiviral therapy dates, only eight (17%) received neuraminidase inhibitors within 48 hours of symptom onset. This report supports previous recommendations that vaccination is important to prevent influenza virus infections that can result in ICU admission or death, particularly in high-risk populations, and that empiric antiviral treatment should be promptly initiated when influenza virus infection is suspected in hospitalized patients, despite negative results from rapid diagnostic tests.

Two separable functional domains of simian virus 40 large T antigen: carboxyl-terminal region of simian virus 40 large T antigen is required for efficient capsid protein synthesis.

PubMed Central

Tornow, J; Polvino-Bodnar, M; Santangelo, G; Cole, C N

1985-01-01

The carboxyl-terminal portion of simian virus 40 large T antigen is essential for productive infection of CV-1 and CV-1p green monkey kidney cells. Mutant dlA2459, lacking 14 base pairs at 0.193 map units, was positive for viral DNA replication, but unable to form plaques in CV-1p cells (J. Tornow and C.N. Cole, J. Virol. 47:487-494, 1983). In this report, the defect of dlA2459 is further defined. Simian virus 40 late mRNAs were transcribed, polyadenylated, spliced, and transported in dlA2459-infected cells, but the level of capsid proteins produced in infected CV-1 green monkey kidney cells was extremely low. dlA2459 large T antigen lacks those residues known to be required for adenovirus helper function, and the block to productive infection by dlA2459 occurs at the same stage of infection as the block to productive adenovirus infection of CV-1 cells. These results suggest that the adenovirus helper function is required for productive infection by simian virus 40. Mutant dlA2459 was able to grow on the Vero and BSC-1 lines of African green monkey kidney cells. Additional mutants affecting the carboxyl-terminal portion of large T were prepared. Mutant inv2408 contains an inversion of the DNA between the BamHI and BclI sites (0.144 to 0.189 map units). This inversion causes transposition of the carboxyl-terminal 26 amino acids of large T antigen and the carboxyl-terminal 18 amino acids of VP1. This mutant was viable, even though the essential information absent from dlA2459 large T antigen has been transferred to the carboxyl terminus of VP1 of inv2408. The VP1 polypeptide carrying this carboxyl-terminal portion of large T could overcome the defect of dlA2459. This indicates that the carboxyl terminus of large T antigen is a separate and separable functional domain. Images PMID:2982029

Microbial Removals by a Novel Biofilter Water Treatment System

PubMed Central

Wendt, Christopher; Ives, Rebecca; Hoyt, Anne L.; Conrad, Ken E.; Longstaff, Stephanie; Kuennen, Roy W.; Rose, Joan B.

2015-01-01

Two point-of-use drinking water treatment systems designed using a carbon filter and foam material as a possible alternative to traditional biosand systems were evaluated for removal of bacteria, protozoa, and viruses. Two configurations were tested: the foam material was positioned vertically around the carbon filter in the sleeve unit or horizontally in the disk unit. The filtration systems were challenged with Cryptosporidium parvum, Raoultella terrigena, and bacteriophages P22 and MS2 before and after biofilm development to determine average log reduction (ALR) for each organism and the role of the biofilm. There was no significant difference in performance between the two designs, and both designs showed significant levels of removal (at least 4 log10 reduction in viruses, 6 log10 for protozoa, and 8 log10 for bacteria). Removal levels meet or exceeded Environmental Protection Agency (EPA) standards for microbial purifiers. Exploratory test results suggested that mature biofilm formation contributed 1–2 log10 reductions. Future work is recommended to determine field viability. PMID:25758649

FRD in optical fibres at low temperatures: investigations for Gemini's Wide-field Fibre Multi-Object Spectrograph

NASA Astrophysics Data System (ADS)

de Oliveira, A. C.; de Oliveira, L. S.; Dos Santos, J. B.; Arruda, M. V.; Dos Santos, L. G. C.; Rodrigues, F.; de Castro, F. L. F.

2011-06-01

While there is no direct evidence for the deterioration in Focal Ratio Degradation (FRD) of optical fibres in severe temperature gradients, the fibre ends inserted into metallic containment devices such as steel ferrules can be a source of stress, and hence increased FRD at low temperatures. In such conditions, instruments using optical fibres may suffer some increase in FRD and consequent loss of system throughput when they are working in environments with significant thermal gradients, a common characteristic of ground-based observatories. In this paper we present results of experiments with optical fibres inserted in different materials as a part of our prototyping study for Gemini's Wide-field Multi-Object Spectrograph (WFMOS) project. Thermal effects and the use of new holding techniques will be discussed in the context of Integral Field Units and multi-fibres systems. In this work, we have used careful methodologies that give absolute measurements of FRD to quantify the advantages of using epoxy-based composites rather than metals as support structures for the fibre ends. This is shown to be especially important in minimizing thermally induced stresses in the fibre terminations. Not only is this important for optimizing fibre spectrograph performance but the benefits of using such materials are demonstrated in the minimization of positional variations and the avoidance of metal-to-glass delamination. Furthermore, by impregnating the composites with small zirconium oxide particles the composite materials supply their own fine polishing grit which aids significantly to the optical quality of the finished product.

The Oxford SWIFT integral field spectrograph

NASA Astrophysics Data System (ADS)

Thatte, Niranjan; Tecza, Matthias; Clarke, Fraser; Goodsall, Timothy; Lynn, James; Freeman, David; Davies, Roger L.

2006-06-01

We present the design of the Oxford SWIFT integral field spectrograph, a dedicated I and z band instrument (0.65μm micron - 1.0μm micron at R~4000), designed to be used in conjunction with the Palomar laser guide star adaptive optics system (PALAO, and its planned upgrade PALM-3000). It builds on two recent developments (i) the improved ability of second generation adaptive optics systems to correct for atmospheric turbulence at wavelengths less than or equal to 1μm micron, and (ii) the availability of CCD array detectors with high quantum efficiency at very red wavelengths (close to the silicon band edge). Combining these with a state-of-the-art integral field unit design using an all-glass image slicer, SWIFT's design provides very high throughput and low scattered light. SWIFT simultaneously provides spectra of ~4000 spatial elements, arranged in a rectangular field-of-view of 44 × 89 pixels. It has three on-the-fly selectable pixel scales of 0.24", 0.16" and 0.08'. First light is expected in spring 2008.

Detection and characterization of an H4N6 avian-lineage influenza A virus in pigs in the Midwestern United States

USDA-ARS?s Scientific Manuscript database

H4Nx viruses were reported in swine in Canada and China, but had not been recognized in swine in the USA. In late 2015, an avian-origin H4N6 influenza A virus was isolated from pigs in the United States during a routine diagnostic investigation of clinical respiratory disease in the herd. Serologica...

Spectra of Th/Ar and U/Ne hollow cathode lamps for spectrograph calibration

NASA Astrophysics Data System (ADS)

Nave, Gillian; Shlosberg, Ariel; Kerber, Florian; Den Hartog, Elizabeth; Neureiter, Bianca

2018-01-01

Low-current Th/Ar hollow cathode lamps have long been used for calibration of astronomical spectrographs on ground-based telescopes. Thorium is an attractive element for calibration as it has a single isotope, has narrow spectral lines, and has a dense spectrum covering the whole of the visible region. However, the high density of the spectrum that makes it attractive for calibrating high-resolution spectrographs is a detriment for lower resolution spectrographs and this is not obvious by examination of existing linelists. In addition, recent changes in regulations regarding the handling of thorium have led to a degradation in the quality of Th/Ar calibration lamps, with contamination by molecular ThO lines that are strong enough to obscure the calibration lines of interest.We are pursuing two approaches to these problems. First, we have expanded and improved the NIST Standard Reference Database 161, "Spectrum of Th-Ar Hollow Cathode Lamps" to cover the region 272 nm to 5500 nm. Spectra of hollow cathode lamps at up to 3 different currents can now be displayed simultaneously. Interactive zooming and the ability to convolve any of the spectra with a Gaussian or uploaded instrument profile enable the user to see immediately what the spectrum would look like at the particular resolution of their spectrograph. Second, we have measured the spectrum of a recent, contaminated Th/Ar hollow cathode lamp using a high-resolution Echelle spectrograph (Madison Wisconsin) at a resolving power (R~ 250,000). This significantly exceeds the resolving power of most astronomical spectrographs and resolves many of the molecular lines of ThO. With these spectra we are measuring and calibrating the positions of these molecular lines in order to make them suitable for spectrograph calibration.In the near infrared region, U/Ne hollow cathode lamps give a higher density of calibration lines than Th/Ar lamps and will be implemented on the upgraded CRIRES+ spectrograph on ESO’s Very Large Telescope in Chile. A new atlas of the U/Ne spectrum as measured by CRIRES will be presented.

Spectroscopic Classification of DLT18w/AT2018bko with SOAR

NASA Astrophysics Data System (ADS)

Pan, Y.-C.; Foley, R. J.

2018-05-01

< p > We report the classification of DLT18w/AT2018bko (ATel #11638) from spectroscopic observation performed on 2018 May 13 UT with the Goodman spectrograph on the Southern Astrophysical Research (SOAR) telescope. The spectrum appears to be blue and shows Balmer absorption lines at z=0, indicating that the transient is Galactic.

Atomic force microscopy investigation of Mason-Pfizer monkey virus and human immunodeficiency virus type 1 reassembled particles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuznetsov, Yu. G.; Ulbrich, P.; Institute of Molecular Genetics, Czech Academy of Sciences, 166 10 Prague

2007-04-10

Particles of {delta}ProCANC, a fusion of capsid (Canada) and nucleocapsid (NC) protein of Mason-Pfizer monkey virus (M-PMV), which lacks the amino terminal proline, were reassembled in vitro and visualized by atomic force microscopy (AFM). The particles, of 83-84 nm diameter, exhibited ordered domains based on trigonal arrays of prominent rings with center to center distances of 8.7 nm. Imperfect closure of the lattice on the spherical surface was affected by formation of discontinuities. The lattice is consistent only with plane group p3 where one molecule is shared between contiguous rings. There are no pentameric clusters nor evidence that the particlesmore » are icosahedral. Tubular structures were also reassembled, in vitro, from two HIV fusion proteins, {delta}ProCANC and CANC. The tubes were uniform in diameter, 40 nm, but varied in length to a maximum of 600 nm. They exhibited left handed helical symmetry based on a p6 hexagonal net. The organization of HIV fusion proteins in the tubes is significantly different than for the protein units in the particles of M-PMV {delta}ProCANC.« less

A human immunodeficiency virus posttest video to increase condom use among adolescent emergency department patients.

PubMed

Calderon, Yvette; Cowan, Ethan; Leu, Cheng-Shiun; Brusalis, Christopher; Rhee, John Y; Nickerson, Jillian; Leider, Jason; Bauman, Laurie J

2013-07-01

To compare the effectiveness of a theory-based HIV educational video tool with in-person HIV counseling in promoting safer sex behaviors among adolescent patients of an urban Emergency Department (ED). This was a randomized controlled trial taking place in the Emergency Department of Jacobi Medical Center in the Bronx, New York. A total of 203 stable, sexually active patients aged 15-21 years completed pre-intervention and postintervention measures. Participants were randomized to the intervention video series (102 participants), a theory-based, youth-friendly human immunodeficiency virus (HIV) educational video, or an in-person HIV counseling session with a trained HIV counselor (101 participants). Participants completed pre-intervention and postintervention measures on the primary outcomes: condom intention, outcome expectancy, and self-efficacy. Participants in the video group improved condom use intention (adjusted differential mean improvement [ADMI] = .98 units; confidence interval [CI], .20-1.77; Holm adjusted p = .028), condom self-efficacy outcome (ADMI = .26 units; CI, .04-.48; Holm adjusted p = .019), and condom outcome expectancy scores (ADMI = .15 units; CI, .07-.23; Holm adjusted p < .001) significantly more than those in the counselor group, adjusting for stage of change. The intervention helped participants progress to the next level of readiness or maintain their positive behavior, and did not differ by age, gender, or race. A theory-based, youth-friendly video can be a valid means to provide posttest HIV education and prevention messages within an urban emergency department. The theory-based prevention messages can improve teenagers' condom intentions, condom self-efficacy, and condom outcome expectancies immediately after the intervention. Copyright © 2013 Society for Adolescent Health and Medicine. Published by Elsevier Inc. All rights reserved.

A Human Immunodeficiency Virus Posttest Video to Increase Condom Use Among Adolescent Emergency Department Patients

PubMed Central

Calderon, Yvette; Cowan, Ethan; Leu, Cheng-Shiun; Brusalis, Christopher; Rhee, John Y.; Nickerson, Jillian; Leider, Jason; Bauman, Laurie J.

2013-01-01

Purpose To compare the effectiveness of a theory-based HIV educational video tool with in-person HIV counseling in promoting safer sex behaviors among adolescent patients of an urban Emergency Department (ED). Methods This was a randomized controlled trial taking place in the Emergency Department of Jacobi Medical Center in the Bronx, New York. A total of 203 stable, sexually active patients aged 15–21 years completed pre-intervention and postintervention measures. Participants were randomized to the intervention video series (102 participants), a theory-based, youth-friendly human immunodeficiency virus (HIV) educational video, or an in-person HIV counseling session with a trained HIV counselor (101 participants). Participants completed pre-intervention and postintervention measures on the primary outcomes: condom intention, outcome expectancy, and self-efficacy. Results Participants in the video group improved condom use intention (adjusted differential mean improvement [ADMI] = .98 units; confidence interval [CI], .20–1.77; Holm adjusted p = .028), condom self-efficacy outcome (ADMI = .26 units; CI, .04–.48; Holm adjusted p = .019), and condom outcome expectancy scores (ADMI = .15 units; CI, .07–.23; Holm adjusted p < .001) significantly more than those in the counselor group, adjusting for stage of change. The intervention helped participants progress to the next level of readiness or maintain their positive behavior, and did not differ by age, gender, or race. Conclusions A theory-based, youth-friendly video can be a valid means to provide posttest HIV education and prevention messages within an urban emergency department. The theory-based prevention messages can improve teenagers’ condom intentions, condom self-efficacy, and condom outcome expectancies immediately after the intervention. PMID:23582525

Zika Virus

MedlinePlus

Zika is a virus that is spread mostly by mosquitoes. A pregnant mother can pass it to ... through blood transfusions. There have been outbreaks of Zika virus in the United States, Africa, Southeast Asia, ...

Crystallization and X-ray diffraction analysis of the RNA primer/promoter-binding domain of influenza A virus RNA-dependent RNA polymerase PB2

PubMed Central

Kuzuhara, Takashi; Kise, Daisuke; Yoshida, Hiroko; Horita, Takahiro; Murazaki, Yoshimi; Utsunomiya, Hiroko; Tsuge, Hideaki

2009-01-01

The C-terminal domain protein (amino-acid residues 535–759) of the PB2 subunit of the RNA-dependent RNA polymerase from the highly pathogenic influenza A virus was expressed as a soluble protein in Escherichia coli and crystallized using sodium formate as a precipitant. Data sets were collected from crystals of native and selenomethionine-substituted protein on the KEK NW12 beamline at the Photon Factory and the crystals diffracted to a maximum resolution of 2.44 Å for the SeMet-derivative crystal. The native crystals were found to belong to space group P3221, with unit-cell parameters a = b = 52.5, c = 156.3 Å. The Matthews value (V M) was 2.7 Å3 Da−1, assuming the presence of one molecule in the asymmetric unit. The SeMet-derivative crystals were found to belong to the same space group, with unit-cell parameters a = b = 52.6, c = 156.4 Å. Attempts are being made to solve the structure by multi-wavelength anomalous dispersion phasing. PMID:19194006

Evolution of canine and equine influenza (H3N8) viruses co-circulating between 2005 and 2008

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rivailler, Pierre; Perry, Ijeoma A.; Jang Yunho

Influenza virus, subtype H3N8, was transmitted from horses to greyhound dogs in 2004 and subsequently spread to pet dog populations. The co-circulation of H3N8 viruses in dogs and horses makes bi-directional virus transmission between these animal species possible. To understand the dynamics of viral transmission, we performed virologic surveillance in dogs and horses between 2005 and 2008 in the United States. The genomes of influenza A H3N8 viruses isolated from 36 dogs and horses were sequenced to determine their origin and evolution. Phylogenetic analyses revealed that H3N8 influenza viruses from horses and dogs were monophyletic and distinct. There was nomore » evidence of canine influenza virus infection in horses with respiratory disease or new introductions of equine influenza viruses into dogs in the United States. Analysis of a limited number of equine influenza viruses suggested substantial separation in the transmission of viruses causing clinically apparent influenza in dogs and horses.« less

SPATIALLY RESOLVED SPECTROSCOPY OF EUROPA’S LARGE-SCALE COMPOSITIONAL UNITS AT 3–4 μ m WITH KECK NIRSPEC

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fischer, P. D.; Brown, M. E.; Trumbo, S. K.

2017-01-01

We present spatially resolved spectroscopic observations of Europa’s surface at 3–4 μ m obtained with the near-infrared spectrograph and adaptive optics system on the Keck II telescope. These are the highest quality spatially resolved reflectance spectra of Europa’s surface at 3–4 μ m. The observations spatially resolve Europa’s large-scale compositional units at a resolution of several hundred kilometers. The spectra show distinct features and geographic variations associated with known compositional units; in particular, large-scale leading hemisphere chaos shows a characteristic longward shift in peak reflectance near 3.7 μ m compared to icy regions. These observations complement previous spectra of large-scalemore » chaos, and can aid efforts to identify the endogenous non-ice species.« less

GRACES, the Gemini remote access CFHT ESPaDOnS spectrograph: initial design and testing

NASA Astrophysics Data System (ADS)

Tollestrup, Eric V.; Pazder, John; Barrick, Gregory; Martioli, Eder; Schiavon, Ricardo; Anthony, André; Halman, Mark; Veillet, Christian

2012-09-01

The Gemini Remote Access CFHT ESPaDOnS Spectrograph (GRACES) is an innovative instrumentation experiment that will demonstrate if ESPaDOnS, a bench-mounted high-resolution optical spectrograph at CFHT, can be fed by a 270-m long fiber from the Gemini-North telescope with low enough losses to remain competitive with conventional spectrographs on other 8 to 10-m telescopes. Detailed simulations have shown that GRACES should be more sensitive than the HIRES spectrograph at Keck Observatory at wavelengths longer than about 600-700 nm. This result is possible by using FPB-type of optical fibers made by Polymicro Technologies and by keeping the critical focal ratio degradation (FRD) losses to less than 10%. Laboratory tests on these FPB optical fibers are underway and show that for 36-m lengths that the FRD losses are as low as 0.8% with a repeatability of 1%. Tests are currently underway on 280-m lengths.

Reconstructive correction of aberrations in nuclear particle spectrographs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berz, M.; Joh, K.; Nolen, J.A.

A method is presented that allows the reconstruction of trajectories in particle spectrographs and the reconstructive correction of residual aberrations that otherwise limit the resolution. Using a computed or fitted high order transfer map that describes the uncorrected aberrations of the spectrograph, it is possible to calculate a map via an analytic recursion relation that allows the computation of the corrected data of interest such as reaction energy and scattering angle as well as the reconstructed trajectories in terms of position measurements in two planes near the focal plane. The technique is only limited by the accuracy of the positionmore » measurements, the incoherent spot sizes, and the accuracy of the transfer map. In practice the method can be expressed as an inversion of a nonlinear map and implemented in the differential algebraic framework. The method is applied to correct residual aberrations in the S800 spectrograph which is under construction at the National Superconducting Cyclotron Laboratory at Michigan State University and to two other high resolution spectrographs.« less

Eurasian-Origin Gene Segments Contribute to the Transmissibility, Aerosol Release, and Morphology of the 2009 Pandemic H1N1 Influenza Virus

PubMed Central

Lakdawala, Seema S.; Lamirande, Elaine W.; Suguitan, Amorsolo L.; Wang, Weijia; Santos, Celia P.; Vogel, Leatrice; Matsuoka, Yumiko; Lindsley, William G.; Jin, Hong; Subbarao, Kanta

2011-01-01

The epidemiological success of pandemic and epidemic influenza A viruses relies on the ability to transmit efficiently from person-to-person via respiratory droplets. Respiratory droplet (RD) transmission of influenza viruses requires efficient replication and release of infectious influenza particles into the air. The 2009 pandemic H1N1 (pH1N1) virus originated by reassortment of a North American triple reassortant swine (TRS) virus with a Eurasian swine virus that contributed the neuraminidase (NA) and M gene segments. Both the TRS and Eurasian swine viruses caused sporadic infections in humans, but failed to spread from person-to-person, unlike the pH1N1 virus. We evaluated the pH1N1 and its precursor viruses in a ferret model to determine the contribution of different viral gene segments on the release of influenza virus particles into the air and on the transmissibility of the pH1N1 virus. We found that the Eurasian-origin gene segments contributed to efficient RD transmission of the pH1N1 virus likely by modulating the release of influenza viral RNA-containing particles into the air. All viruses replicated well in the upper respiratory tract of infected ferrets, suggesting that factors other than viral replication are important for the release of influenza virus particles and transmission. Our studies demonstrate that the release of influenza viral RNA-containing particles into the air correlates with increased NA activity. Additionally, the pleomorphic phenotype of the pH1N1 virus is dependent upon the Eurasian-origin gene segments, suggesting a link between transmission and virus morphology. We have demonstrated that the viruses are released into exhaled air to varying degrees and a constellation of genes influences the transmissibility of the pH1N1 virus. PMID:22241979

Presence and Persistence of Zika Virus RNA in Semen, United Kingdom, 2016.

PubMed

Atkinson, Barry; Thorburn, Fiona; Petridou, Christina; Bailey, Daniel; Hewson, Roger; Simpson, Andrew J H; Brooks, Timothy J G; Aarons, Emma J

2017-04-01

Zika virus RNA has been detected in semen collected several months after onset of symptoms of infection. Given the potential for sexual transmission of Zika virus and for serious fetal abnormalities resulting from infection during pregnancy, information regarding the persistence of Zika virus in semen is critical for advancing our understanding of potential risks. We tested serial semen samples from symptomatic male patients in the United Kingdom who had a diagnosis of imported Zika virus infection. Among the initial semen samples from 23 patients, Zika virus RNA was detected at high levels in 13 (56.5%) and was not detected in 9 (39.1%); detection was indeterminate in 1 sample (4.4%). After symptomatic infection, a substantial proportion of men have detectable Zika virus RNA at high copy numbers in semen during early convalescence, suggesting high risk for sexual transmission. Viral RNA clearance times are not consistent and can be prolonged.

Molecular Phylogeny of the Psittacid Herpesviruses Causing Pacheco's Disease: Correlation of Genotype with Phenotypic Expression

PubMed Central

Tomaszewski, Elizabeth K.; Kaleta, Erhard F.; Phalen, David N.

2003-01-01

Fragments of 419 bp of the UL16 open reading frame from 73 psittacid herpesviruses (PsHVs) from the United States and Europe were sequenced. All viruses caused Pacheco's disease, and serotypes of the European isolates were known. A phylogenetic tree derived from these sequences demonstrated that the PsHVs that cause Pacheco's disease comprised four major genotypes, with each genotype including between two and four variants. With the exception of two viruses, the serotypes of the virus isolates could be predicted by the genotypes. Genotypes 1 and 4 corresponded to serotype 1 isolates, genotype 2 corresponded to serotype 2 isolates, and genotype 3 corresponded to serotype 3 isolates. The single serotype 4 virus mapped to genotype 4. DNA from a virus with a unique serotype could not be amplified with primers that amplified DNA from all other PsHVs, and its classification remains unknown. Viruses representing all four genotypes were found in both the United States and Europe, and it was therefore predicted that serotypes 1, 2, and 3 were present in the United States. Serotype 4 was represented by a single European isolate that could not be genetically distinguished from serotype 1 viruses; therefore, the presence of serotype 4 in the United States could not be predicted. Viruses of genotype 4 were found to be the most commonly associated with Pacheco's disease in macaws and conures and were least likely to be isolated in chicken embryo fibroblasts in the United States. All four genotypes caused deaths in Amazon parrots, but genotype 4 was associated with Pacheco's disease only in Amazons in Europe. Genotypes 2, 3, and 4, but not 1, were found in African grey parrots. Although parrots from the Pacific distribution represent a relatively small percentage of the total number of birds with Pacheco's disease, all four genotypes were found to cause disease in these species. PMID:14512573

Influenza HA subtypes demonstrate divergent phenotypes for cleavage activation and pH of fusion: implications for host range and adaptation.

PubMed

Galloway, Summer E; Reed, Mark L; Russell, Charles J; Steinhauer, David A

2013-02-01

The influenza A virus (IAV) HA protein must be activated by host cells proteases in order to prime the molecule for fusion. Consequently, the availability of activating proteases and the susceptibility of HA to protease activity represents key factors in facilitating virus infection. As such, understanding the intricacies of HA cleavage by various proteases is necessary to derive insights into the emergence of pandemic viruses. To examine these properties, we generated a panel of HAs that are representative of the 16 HA subtypes that circulate in aquatic birds, as well as HAs representative of the subtypes that have infected the human population over the last century. We examined the susceptibility of the panel of HA proteins to trypsin, as well as human airway trypsin-like protease (HAT) and transmembrane protease, serine 2 (TMPRSS2). Additionally, we examined the pH at which these HAs mediated membrane fusion, as this property is related to the stability of the HA molecule and influences the capacity of influenza viruses to remain infectious in natural environments. Our results show that cleavage efficiency can vary significantly for individual HAs, depending on the protease, and that some HA subtypes display stringent selectivity for specific proteases as activators of fusion function. Additionally, we found that the pH of fusion varies by 0.7 pH units among the subtypes, and notably, we observed that the pH of fusion for most HAs from human isolates was lower than that observed from avian isolates of the same subtype. Overall, these data provide the first broad-spectrum analysis of cleavage-activation and membrane fusion characteristics for all of the IAV HA subtypes, and also show that there are substantial differences between the subtypes that may influence transmission among hosts and establishment in new species.

Influenza HA Subtypes Demonstrate Divergent Phenotypes for Cleavage Activation and pH of Fusion: Implications for Host Range and Adaptation

PubMed Central

Galloway, Summer E.; Reed, Mark L.; Russell, Charles J.; Steinhauer, David A.

2013-01-01

The influenza A virus (IAV) HA protein must be activated by host cells proteases in order to prime the molecule for fusion. Consequently, the availability of activating proteases and the susceptibility of HA to protease activity represents key factors in facilitating virus infection. As such, understanding the intricacies of HA cleavage by various proteases is necessary to derive insights into the emergence of pandemic viruses. To examine these properties, we generated a panel of HAs that are representative of the 16 HA subtypes that circulate in aquatic birds, as well as HAs representative of the subtypes that have infected the human population over the last century. We examined the susceptibility of the panel of HA proteins to trypsin, as well as human airway trypsin-like protease (HAT) and transmembrane protease, serine 2 (TMPRSS2). Additionally, we examined the pH at which these HAs mediated membrane fusion, as this property is related to the stability of the HA molecule and influences the capacity of influenza viruses to remain infectious in natural environments. Our results show that cleavage efficiency can vary significantly for individual HAs, depending on the protease, and that some HA subtypes display stringent selectivity for specific proteases as activators of fusion function. Additionally, we found that the pH of fusion varies by 0.7 pH units among the subtypes, and notably, we observed that the pH of fusion for most HAs from human isolates was lower than that observed from avian isolates of the same subtype. Overall, these data provide the first broad-spectrum analysis of cleavage-activation and membrane fusion characteristics for all of the IAV HA subtypes, and also show that there are substantial differences between the subtypes that may influence transmission among hosts and establishment in new species. PMID:23459660

Charting Ingredients for Life

NASA Technical Reports Server (NTRS)

2005-01-01

[figure removed for brevity, see original site] Figure 1: Spectrum Charts Light from a Faraway Galaxy

This graph, or spectrum, charts light from a faraway galaxy located 10 billion light years from Earth. It tracks mid-infrared light from an extremely luminous galaxy when the universe was only 1/4 of its current age.

Spectra are created when an instrument called a spectrograph spreads light out into its basic parts, like a prism turning sunlight into a rainbow. They reveal the signatures, or 'fingerprints,' of molecules that make up a galaxy and contribute to its light.

Spitzer's infrared spectrometer identified characteristic fingerprints of complex organic molecules called polycyclic aromatic hydrocarbons, illustrated in the artist's concept in the inset. These large molecules comprised of carbon and hydrogen, are considered among the building blocks of life.

Scientists determined it took 10 billion years for photons from this galaxy to reach Spitzer's infrared eyes. These complex carbon and hydrogen molecules are from a young galaxy which is undergoing intense star formation, at the time the universe was only 3.5 billion years old.

These distant galaxies with enormous amounts of gas being converted into young stars are some of the most luminous objects in the sky. Enshrouded by dust, they are only faint, inconspicuous little dots in optical images. They are as bright as 10 trillion suns put together and 10 times brighter than starburst galaxies seen in our local universe.

This prompts a fascinating question as to what physical process is driving such enormous energy production in these galaxies when the universe is so young.

These data were taken by Spitzer's infrared spectrograph in August and September 2004.

Epstein-Barr virus patterns in US Burkitt lymphoma tumors from the SEER residual tissue repository during 1979-2009.

PubMed

Mbulaiteye, Sam M; Pullarkat, Sheeja T; Nathwani, Bharat N; Weiss, Lawrence M; Rao, Nagesh; Emmanuel, Benjamin; Lynch, Charles F; Hernandez, Brenda; Neppalli, Vishala; Hawes, Debra; Cockburn, Myles G; Kim, Andre; Williams, Makeda; Altekruse, Sean; Bhatia, Kishor; Goodman, Marc T; Cozen, Wendy

2014-01-01

Burkitt lymphoma (BL) occurs at all ages, but the patterns of Epstein-Barr virus (EBV) positivity in relation to human immunodeficiency virus (HIV), immunoprofiles and age have not been fully explored. BL tissues from residual tissue repositories, and two academic centers in the United States were examined by expert hematopathologists for morphology, immunohistochemistry, MYC rearrangement, EBV-encoded RNA (EBER), and diagnosed according to the 2008 WHO lymphoma classification. Analysis was done using frequency tables, Chi-squared statistics, and Student's t-test. Of 117 cases examined, 91 were confirmed as BL. The age distribution was 26%, 15%, 19%, and 29% for 0-19, 20-34, 35-59, 60+ years, and missing in 11%. MYC rearrangement was found in 89% and EBER positivity in 29% of 82 cases with results. EBER positivity varied with age (from 13% in age group 0-19 to 55% in age group 20-34, and fell to 25% in age group 60+ years, p = 0.08); with race (56% in Blacks/Hispanics vs 21% in Whites/Asians/Pacific Islanders, p = 0.006); and by HIV status (64% in HIV positive vs 22% in HIV negative cases, p = 0.03). EBER positivity was demonstrated in about one-third of tumors and it was strongly associated with race and HIV status, and marginally with age-group. © 2013 APMIS Published by Blackwell Publishing Ltd.

The Heterologous Expression of the p22 RNA Silencing Suppressor of the Crinivirus Tomato Chlorosis Virus from Tobacco Rattle Virus and Potato Virus X Enhances Disease Severity but Does Not Complement Suppressor-Defective Mutant Viruses.

PubMed

Landeo-Ríos, Yazmín; Navas-Castillo, Jesús; Moriones, Enrique; Cañizares, M. Carmen

2017-11-24

To counteract host antiviral RNA silencing, plant viruses express suppressor proteins that function as pathogenicity enhancers. The genome of the Tomato chlorosis virus (ToCV) (genus Crinivirus , family Closteroviridae ) encodes an RNA silencing suppressor, the protein p22, that has been described as having one of the longest lasting local suppressor activities when assayed in Nicotiana benthamiana . Since suppression of RNA silencing and the ability to enhance disease severity are closely associated, we analyzed the effect of expressing p22 in heterologous viral contexts. Thus, we studied the effect of the expression of ToCV p22 from viral vectors Tobacco rattle virus (TRV) and Potato virus X (PVX), and from attenuated suppressor mutants in N. benthamiana plants. Our results show that although an exacerbation of disease symptoms leading to plant death was observed in the heterologous expression of ToCV p22 from both viruses, only in the case of TRV did increased viral accumulation occur. The heterologous expression of ToCV p22 could not complement suppressor-defective mutant viruses.

[Social and family characteristics in children born to women infected by the human immunodeficiency virus].

PubMed

Sanz Aliaga, S A; Sancho Izquierdo, E; Asensi Botet, F; Otero Reigada, M C

2000-01-01

To evaluate the social and family characteristics of children born to women infected by the human immunodeficiency virus (HIV). As secondary objectives, to analyse their schooling and the number of hospital admissions and lengths of stay that these children required. A prospective observation study. HIV unit in a children's hospital. all the children recruited from the HIV unit who had their infection status defined during the study period, understood as between the first known case in 1985 and April 1994. The sample included 177 children (62 HIV-infected and 115 not infected). Through an interview the social, family and school variables were collected. On comparison between infected and non-infected children, there were no important differences as to the lack of protection of the new-born (8.1% vs 13%), scant mother-child relationship (31.2% vs 36.5%) or people responsible for the custody of these children. Less schooling and greater problems of school integration were detected in infected cases, with odds ratios of 2.68 (p = 0.004) and 11.36 (p = 0.004), respectively. Children infected also needed more admissions (4.3 +/- 5.7) than the non-infected (1.7 +/- 0.9) (p = 0.001), and more days of hospital stay (75.1 +/- 110.3 vs 23.3 +/- 19.6) (p = 0.0003). Infected children and non-infected children had similar social and family characteristics. However, less schooling, problems of school integration, and more and longer hospital admissions were related to HIV infection in children, and not so much to their status as children of seropositive mothers.

[Respiratory syncytial virus outbreak in a tertiary hospital Neonatal Intensive Care Unit].

PubMed

Moreno Parejo, Carlos; Morillo García, Aurea; Lozano Domínguez, Carmen; Carreño Ochoa, Concepción; Aznar Martín, Javier; Conde Herrera, Manuel

2016-09-01

Investigation and control of a respiratory syncytial virus (RSV) outbreak that affected the Neonatal Intensive Care Unit (NICU) of a university hospital from October to December 2012. Cohort study of children admitted to the NICU. The infection attack rate was calculated. A descriptive analysis of the cases and a multivariate analysis was performed using the variables that were shown to be risk factors for RSV infection. Preventive measures taken were: contact isolation; hand hygiene training and observation; exclusivity of a health team of nurses and physicians for positive cases, restrictions on visitor numbers; surveillance RSV testing, and palivizumab prophylaxis. The outbreak had three epidemic waves and 20 positive cases out of a total of 48 children admitted. The overall attack rate was 42%. Half of positive cases were children, with a median age of 36 days (p25=22, p75=58). The independent risk factors for RSV infection were birth weight below 1000 grams (OR=23.5; P=.002) and to have another nosocomial infection the week before the diagnosis of RSV infection (OR=19.98; P=.016). It was an outbreak with a high number of cases, due to the delay in notification, prolonged RSV carrier status, and low adherence to hand hygiene practice, which favoured the cross-transmission of infection. The most effective preventive measures were direct observation of hand hygiene and supervision of isolation measures. Copyright © 2015 Asociación Española de Pediatría. Publicado por Elsevier España, S.L.U. All rights reserved.

Hepatitis E Virus Infection in Dromedaries, North and East Africa, United Arab Emirates, and Pakistan, 1983–2015

PubMed Central

Rasche, Andrea; Saqib, Muhammad; Liljander, Anne M.; Bornstein, Set; Zohaib, Ali; Renneker, Stefanie; Steinhagen, Katja; Wernery, Renate; Younan, Mario; Gluecks, Ilona; Hilali, Mosaad; Musa, Bakri E.; Jores, Joerg; Wernery, Ulrich; Drexer, Jan Felix; Corman, Victor Max

2016-01-01

A new hepatitis E virus (HEV-7) was recently found in dromedaries and 1 human from the United Arab Emirates. We screened 2,438 dromedary samples from Pakistan, the United Arab Emirates, and 4 African countries. HEV-7 is long established, diversified and geographically widespread. Dromedaries may constitute a neglected source of zoonotic HEV infections. PMID:27315454

Hepatitis E Virus Infection in Dromedaries, North and East Africa, United Arab Emirates, and Pakistan, 1983-2015.

PubMed

Rasche, Andrea; Saqib, Muhammad; Liljander, Anne M; Bornstein, Set; Zohaib, Ali; Renneker, Stefanie; Steinhagen, Katja; Wernery, Renate; Younan, Mario; Gluecks, Ilona; Hilali, Mosaad; Musa, Bakri E; Jores, Joerg; Wernery, Ulrich; Drexler, Jan Felix; Drosten, Christian; Corman, Victor Max

2016-07-01

A new hepatitis E virus (HEV-7) was recently found in dromedaries and 1 human from the United Arab Emirates. We screened 2,438 dromedary samples from Pakistan, the United Arab Emirates, and 4 African countries. HEV-7 is long established, diversified and geographically widespread. Dromedaries may constitute a neglected source of zoonotic HEV infections.

4MOST fiber feed preliminary design: prototype testing and performance

NASA Astrophysics Data System (ADS)

Haynes, Dionne M.; Kelz, Andreas; Barden, Samuel C.; Bauer, Svend-Marian; Ehrlich, Katjana; Haynes, Roger; Jahn, Thomas; Saviauk, Allar; de Jong, Roelof S.

2016-08-01

The 4MOST instrument is a multi-object-spectrograph for the ESO-VISTA telescope. The 4MOST fiber feed subsystem is composed of a fiber positioner (AESOP) holding 2436 science fibers based on the Echidna tilting spine concept, and the fiber cable, which feeds two low-resolution spectrographs (1624 fibers) and one high-resolution spectrograph (812 fibers). In order to optimize the fiber feed subsystem design and provide essential information required for the spectrograph design, prototyping and testing has been undertaken. In this paper we give an overview of the current fiber feed subsystem design and present the preliminary FRD, scrambling, throughput and system performance impact results for: maximum and minimum spine tilt, fiber connectors, cable de-rotator simulator for fiber cable lifetime tests.

VizieR Online Data Catalog: The ELM survey. VI. 11 new ELM WD binaries (Gianninas+, 2015)

NASA Astrophysics Data System (ADS)

Gianninas, A.; Kilic, M.; Brown, W. R.; Canton, P.; Kenyon, S. J.

2016-02-01

We used the 6.5m MMT telescope equipped with the Blue Channel spectrograph, the 200 inch Hale telescope equipped with the Double spectrograph, the Kitt Peak National Observatory 4m telescope equipped with the R-C spectrograph, and more recently with Kitt Peak Ohio State Multi-Object Spectrograph (KOSMOS), to obtain spectroscopy of our 11 targets in several observing runs. We have also been obtaining radial-velocity measurements for candidates from other sources including the Large Sky Area Multi-Object Spectroscopy Telescope (LAMOST). Those 11 new Extremely low-mass white dwarf (ELM WD) binaries bring the total of ELM WDs identified by the ELM Survey up to 73. (4 data files).

Challenges of hemodialysis in Vietnam: experience from the first standardized district dialysis unit in Ho Chi Minh City.

PubMed

Duong, Cuong Minh; Olszyna, Dariusz Piotr; Nguyen, Phong Duy; McLaws, Mary-Louise

2015-08-01

Hemodialysis is an increasingly common treatment in Vietnam as the diagnosis of end stage renal disease continues to rise. To provide appropriate hemodialysis treatment for end-stage renal disease patients, we conducted a 1-year cross-sectional study to measure the prevalence of bloodborne infection and factors associated with non-compliant behaviors in hemodialysis patients. One hundred forty-two patients were tested for hepatitis B virus (HBV) surface antigen and hepatitis C virus (HCV) core antigen. They provided demographic, medical and dialysis information. Non-compliant behaviors were obtained from their medical records. Overall, 99 % of patients reused their dialyzers and 46 % had arteriovenous fistula on admission. Both HBV and HCV equally accounted for 8 % of patients and concurrent infection accounted for 1 %. Non-compliance rates of dietary and medication were 39 and 27 % respectively. 42 % of patients missed hemodialysis session, 8 % were verbally or physically abusive and 9 % were non-cooperative. Of the 54 % catheterized patients, 7 % improperly cared for their dialysis access. Dietary non-adherence was associated with male patients (p = 0.03) and medication non-adherence was associated with younger age (p = 0.05). Duration between diagnosis of chronic kidney disease and initiation of hemodialysis was associated with improper care of dialysis access (p = 0.04). Time on hemodialysis was associated with missed hemodialysis session (p = 0.007) and verbal or physical abuse (p = 0.01). Health services need to provide safe practice for dialyzer reuse given the endemicity of hepatitis. We believe a national survey similar to ours about seroprevalence and infection control challenges would prepare Vietnam for providing safer satellite treatment units. Safe hemodialysis services should also comprise patient preparedness, education and counseling.

Method for determining virus inactivation during sludge treatment processes.

PubMed Central

Traub, F; Spillmann, S K; Wyler, R

1986-01-01

A simple and reliable method is described which allows determination of virus inactivation rates during sludge treatment processes in situ. Bacteriophage f2 was adsorbed onto an electropositive membrane filter which was then sandwiched between two polycarbonate membranes with pores smaller than the virus diameter. The resulting sandwich was fixed in an open filter holder, and several such devices were connected before being exposed in sludge-digesting tanks. The device described prevented uncontrolled virus escape, but allowed direct contact of the various inactivating or stabilizing substances present in the environment tested with the virus adsorbed to the carrier membrane. After exposure to an environment, the surviving fraction of virus was eluted from the inner filter and determined by plaque counting. By using polycarbonate membranes without pores for sandwiching, the influence of temperature alone on virus inactivation could be measured. Thermophilic fermentation at 60 degrees C and at 65 kPa pressure led to a bacteriophage f2 titer reduction of 3.5 log10 units per h, whereas during thermophilic digestion at 54.5 degrees C titers decreased 1.2 log10 units per h. During mesophilic digestion an inactivation rate of only 0.04 log10 units per h was observed. Under these latter conditions, temperature had only a minor effect (19%) on virus inactivation, whereas at 54.5 degrees C during thermophilic digestion heat accounted for 32% of the total inactivation, and during thermophilic fermentation at 60 degrees C temperature and pressure were 100% responsible for virus denaturation. PMID:3532955

Replication of alfalfa mosaic virus RNA 3 with movement and coat protein genes replaced by corresponding genes of Prunus necrotic ringspot ilarvirus.

PubMed

Sánchez-Navarro, J A; Reusken, C B; Bol, J F; Pallás, V

1997-12-01

Alfalfa mosaic virus (AMV) and Prunus necrotic ringspot virus (PNRSV) are tripartite positive-strand RNA plant viruses that encode functionally similar translation products. Although the two viruses are phylogenetically closely related, they infect a very different range of natural hosts. The coat protein (CP) gene, the movement protein (MP) gene or both genes in AMV RNA 3 were replaced by the corresponding genes of PNRSV. The chimeric viruses were tested for heterologous encapsidation, replication in protoplasts from plants transformed with AMV replicase genes P1 and P2 (P12 plants) and for cell-to-cell transport in P12 plants. The chimeric viruses exhibited basic competence for encapsidation and replication in P12 protoplasts and for a low level of cell-to-cell movement in P12 plants. The potential involvement of the MP gene in determining host specificity in ilarviruses is discussed.

Generation of Influenza Virus from Avian Cells Infected by Salmonella Carrying the Viral Genome

PubMed Central

Zhang, Xiangmin; Kong, Wei; Wanda, Soo-Young; Xin, Wei; Alamuri, Praveen; Curtiss, Roy

2015-01-01

Domestic poultry serve as intermediates for transmission of influenza A virus from the wild aquatic bird reservoir to humans, resulting in influenza outbreaks in poultry and potential epidemics/pandemics among human beings. To combat emerging avian influenza virus, an inexpensive, heat-stable, and orally administered influenza vaccine would be useful to vaccinate large commercial poultry flocks and even migratory birds. Our hypothesized vaccine is a recombinant attenuated bacterial strain able to mediate production of attenuated influenza virus in vivo to induce protective immunity against influenza. Here we report the feasibility and technical limitations toward such an ideal vaccine based on our exploratory study. Five 8-unit plasmids carrying a chloramphenicol resistance gene or free of an antibiotic resistance marker were constructed. Influenza virus was successfully generated in avian cells transfected by each of the plasmids. The Salmonella carrier was engineered to allow stable maintenance and conditional release of the 8-unit plasmid into the avian cells for recovery of influenza virus. Influenza A virus up to 107 50% tissue culture infective doses (TCID50)/ml were recovered from 11 out of 26 co-cultures of chicken embryonic fibroblasts (CEF) and Madin-Darby canine kidney (MDCK) cells upon infection by the recombinant Salmonella carrying the 8-unit plasmid. Our data prove that a bacterial carrier can mediate generation of influenza virus by delivering its DNA cargoes into permissive host cells. Although we have made progress in developing this Salmonella influenza virus vaccine delivery system, further improvements are necessary to achieve efficient virus production, especially in vivo. PMID:25742162

7000 years of Emiliania huxleyi viruses in the Black Sea.

PubMed

Coolen, Marco J L

2011-07-22

A 7000-year record of Coccolithovirus and its host, the calcifying haptophyte Emiliania huxleyi, was reconstructed on the basis of genetic signatures preserved in sediments underlying the Black Sea. The data show that the same virus and host populations can persist for centuries. Major changes in virus and host populations occurred during early sapropel deposition, ~5600 years ago, and throughout the formation of the coccolith-bearing sediments of Unit I during the past 2500 years, when the Black Sea experienced dramatic changes in hydrologic and nutrient regimes. Unit I saw a reoccurrence of the same host genotype thousands of years later in the presence of a different subset of viruses. Historical plankton virus populations can thus be included in paleoecological and paleoenvironmental studies.

NONINDIGENOUS PATHOGENIC SHRIMP VIRUS INTRODUCTIONS INTO THE UNITED STATES: DEVELOPING A QUALITATIVE ECOLOGICAL RISK ASSESSMENT

EPA Science Inventory

Nonindigenous Pathogenic Shrimp Virus Introductions into the United States: Developing a Qualitative Ecological Risk Assessment. Austin, R.K.; van der Schalie, W.R.; U.S. Environmental Protection Agency, Washington, DC; Menzie, C.; Menzie-Cura and Associates, Chelmsford, MA; Fair...

Determining seed transmission of sugarcane mosaic virus and sugarcane yellow leaf virus in sugarcane

USDA-ARS?s Scientific Manuscript database

The importation of sugarcane germplasm is essential to diversify sugarcane germplasm used in United States breeding programs. Foreign germplasm is received primarily as vegetative cuttings. Current permit requirements for importing sugarcane seed into the United States are impractical and limit the ...

Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961-2009.

PubMed

Abernathy, Emily; Chen, Min-hsin; Bera, Jayati; Shrivastava, Susmita; Kirkness, Ewen; Zheng, Qi; Bellini, William; Icenogle, Joseph

2013-01-25

Rubella virus is the causative agent of rubella, a mild rash illness, and a potent teratogenic agent when contracted by a pregnant woman. Global rubella control programs target the reduction and elimination of congenital rubella syndrome. Phylogenetic analysis of partial sequences of rubella viruses has contributed to virus surveillance efforts and played an important role in demonstrating that indigenous rubella viruses have been eliminated in the United States. Sixteen wild-type rubella viruses were chosen for whole genome sequencing. All 16 viruses were collected in the United States from 1961 to 2009 and are from 8 of the 13 known rubella genotypes. Phylogenetic analysis of 30 whole genome sequences produced a maximum likelihood tree giving high bootstrap values for all genotypes except provisional genotype 1a. Comparison of the 16 new complete sequences and 14 previously sequenced wild-type viruses found regions with clusters of variable amino acids. The 5' 250 nucleotides of the genome are more conserved than any other part of the genome. Genotype specific deletions in the untranslated region between the non-structural and structural open reading frames were observed for genotypes 2B and genotype 1G. No evidence was seen for recombination events among the 30 viruses. The analysis presented here is consistent with previous reports on the genetic characterization of rubella virus genomes. Conserved and variable regions were identified and additional evidence for genotype specific nucleotide deletions in the intergenic region was found. Phylogenetic analysis confirmed genotype groupings originally based on structural protein coding region sequences, which provides support for the WHO nomenclature for genetic characterization of wild-type rubella viruses.

Expression, Purification, Crystallization of Two Major Envelope Proteins from White Spot Syndrome Virus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tang,X.; Hew, C.

2007-01-01

White spot syndrome virus (WSSV) is a major virulent pathogen known to infect penaeid shrimp and other crustaceans. VP26 and VP28, two major envelope proteins from WSSV, have been identified and overexpressed in Escherichia coli. In order to facilitate purification and crystallization, predicted N-terminal transmembrane regions of approximately 35 amino acids have been truncated from both VP26 and VP28. Truncated VP26 and VP28 and their corresponding SeMet-labelled proteins were purified and the SeMet proteins were crystallized by the hanging-drop vapor-diffusion method. Crystals of SeMet-labelled VP26 were obtained using a reservoir consisting of 0.1 M citric acid pH 3.5, 3.0 Mmore » sodium chloride and 1%(w/v) polyethylene glycol 3350, whereas SeMet VP28 was crystallized using a reservoir solution consisting of 25% polyethylene glycol 8000, 0.2 M calcium acetate, 0.1 M Na HEPES pH 7.5 and 1.5%(w/v) 1,2,3-heptanetriol. Crystals of SeMet-labelled VP26 diffract to 2.2 {angstrom} resolution and belong to space group R32, with unit-cell parameters a = b = 73.92, c = 199.31 {angstrom}. SeMet-labelled VP28 crystallizes in space group P2{sub 1}2{sub 1}2{sub 1}, with unit-cell parameters a = 105.33, b = 106.71, c = 200.37 {angstrom}, and diffracts to 2.0 {angstrom} resolution.« less

Zika virus disease knowledge among the future health-care providers of the United Arab Emirates.

PubMed

Rabbani, Syed Arman; Mustafa, Farhan; Shouqair, Tasneem; Mohamad, Itaf; Tahsin, Nada

2018-01-01

Zika virus (ZIKV) disease has become a major public health concern. Although there are no reported cases of ZIKV disease in the United Arab Emirates (UAE), there is a potential risk of transmission due to large expatriate population and high influx of international travelers. This cross-sectional study was conducted to assess the knowledge of ZIKV disease among the students of a medical and health sciences university in the UAE. Their knowledge of ZIKV disease was assessed using a specially designed, pretested, and validated questionnaire. Of the 500 respondents included in the final analysis, 314 (62.8%) respondents presented with poor knowledge of ZIKV disease. The mean knowledge score of the study population was 10.48 ± 2.48 out of a maximum of 17. Gender, college and year of study, nationality and attendance in lecture/conference/workshop on Zika were significantly associated with the level of knowledge. The males possessed significantly ( P = 0.046) better knowledge as compared to the females. Students of medical college had significantly ( P = 0.005) better knowledge as compared to students of other colleges. The level of knowledge improved significantly ( P = 0.026) as the year of study progressed. There is a need for medical and paramedical students to update their knowledge of ZIKV disease as they are the future health-care providers who will be responsible for creating awareness about such outbreaks and their preventive measures.

Zika virus disease knowledge among the future health-care providers of the United Arab Emirates

PubMed Central

Rabbani, Syed Arman; Mustafa, Farhan; Shouqair, Tasneem; Mohamad, Itaf; Tahsin, Nada

2018-01-01

Zika virus (ZIKV) disease has become a major public health concern. Although there are no reported cases of ZIKV disease in the United Arab Emirates (UAE), there is a potential risk of transmission due to large expatriate population and high influx of international travelers. This cross-sectional study was conducted to assess the knowledge of ZIKV disease among the students of a medical and health sciences university in the UAE. Their knowledge of ZIKV disease was assessed using a specially designed, pretested, and validated questionnaire. Of the 500 respondents included in the final analysis, 314 (62.8%) respondents presented with poor knowledge of ZIKV disease. The mean knowledge score of the study population was 10.48 ± 2.48 out of a maximum of 17. Gender, college and year of study, nationality and attendance in lecture/conference/workshop on Zika were significantly associated with the level of knowledge. The males possessed significantly (P = 0.046) better knowledge as compared to the females. Students of medical college had significantly (P = 0.005) better knowledge as compared to students of other colleges. The level of knowledge improved significantly (P = 0.026) as the year of study progressed. There is a need for medical and paramedical students to update their knowledge of ZIKV disease as they are the future health-care providers who will be responsible for creating awareness about such outbreaks and their preventive measures. PMID:29441320

Spectroscopic classification of TCP J00333837+4836022 as a nova in NGC 147

NASA Astrophysics Data System (ADS)

Williams, S. C.; Darnley, M. J.

2017-12-01

We obtained a spectrum of the transient TCP J00333837+4836022 (see CBAT TOCP) with the SPRAT spectrograph (resolution R 350; Piascik et al. 2014) on the 2-m Liverpool Telescope (Steele et al. 2004) on 2017 Dec 24.82 UT. The only emission clearly present is H & alpha;, which displays a P-Cygni profile.

Functional Evolution of Influenza Virus NS1 Protein in Currently Circulating Human 2009 Pandemic H1N1 Viruses.

PubMed

Clark, Amelia M; Nogales, Aitor; Martinez-Sobrido, Luis; Topham, David J; DeDiego, Marta L

2017-09-01

In 2009, a novel H1N1 influenza virus emerged in humans, causing a global pandemic. It was previously shown that the NS1 protein from this human 2009 pandemic H1N1 (pH1N1) virus was an effective interferon (IFN) antagonist but could not inhibit general host gene expression, unlike other NS1 proteins from seasonal human H1N1 and H3N2 viruses. Here we show that the NS1 protein from currently circulating pH1N1 viruses has evolved to encode 6 amino acid changes (E55K, L90I, I123V, E125D, K131E, and N205S) with respect to the original protein. Notably, these 6 residue changes restore the ability of pH1N1 NS1 to inhibit general host gene expression, mainly by their ability to restore binding to the cellular factor CPSF30. This is the first report describing the ability of the pH1N1 NS1 protein to naturally acquire mutations that restore this function. Importantly, a recombinant pH1N1 virus containing these 6 amino acid changes in the NS1 protein (pH1N1/NSs-6mut) inhibited host IFN and proinflammatory responses to a greater extent than that with the parental virus (pH1N1/NS1-wt), yet virus titers were not significantly increased in cell cultures or in mouse lungs, and the disease was partially attenuated. The pH1N1/NSs-6mut virus grew similarly to pH1N1/NSs-wt in mouse lungs, but infection with pH1N1/NSs-6mut induced lower levels of proinflammatory cytokines, likely due to a general inhibition of gene expression mediated by the mutated NS1 protein. This lower level of inflammation induced by the pH1N1/NSs-6mut virus likely accounts for the attenuated disease phenotype and may represent a host-virus adaptation affecting influenza virus pathogenesis. IMPORTANCE Seasonal influenza A viruses (IAVs) are among the most common causes of respiratory infections in humans. In addition, occasional pandemics are caused when IAVs circulating in other species emerge in the human population. In 2009, a swine-origin H1N1 IAV (pH1N1) was transmitted to humans, infecting people then and up to the present. It was previously shown that the NS1 protein from the 2009 pandemic H1N1 (pH1N1) virus is not able to inhibit general gene expression. However, currently circulating pH1N1 viruses have evolved to encode 6 amino acid changes (E55K, L90I, I123V, E125D, K131E, and N205S) that allow the NS1 protein of contemporary pH1N1 strains to inhibit host gene expression, which correlates with its ability to interact with CPSF30. Infection with a recombinant pH1N1 virus encoding these 6 amino acid changes (pH1N1/NSs-6mut) induced lower levels of proinflammatory cytokines, resulting in viral attenuation in vivo This might represent an adaptation of pH1N1 virus to humans. Copyright © 2017 American Society for Microbiology.

Functional Evolution of Influenza Virus NS1 Protein in Currently Circulating Human 2009 Pandemic H1N1 Viruses

PubMed Central

Clark, Amelia M.; Nogales, Aitor; Martinez-Sobrido, Luis

2017-01-01

ABSTRACT In 2009, a novel H1N1 influenza virus emerged in humans, causing a global pandemic. It was previously shown that the NS1 protein from this human 2009 pandemic H1N1 (pH1N1) virus was an effective interferon (IFN) antagonist but could not inhibit general host gene expression, unlike other NS1 proteins from seasonal human H1N1 and H3N2 viruses. Here we show that the NS1 protein from currently circulating pH1N1 viruses has evolved to encode 6 amino acid changes (E55K, L90I, I123V, E125D, K131E, and N205S) with respect to the original protein. Notably, these 6 residue changes restore the ability of pH1N1 NS1 to inhibit general host gene expression, mainly by their ability to restore binding to the cellular factor CPSF30. This is the first report describing the ability of the pH1N1 NS1 protein to naturally acquire mutations that restore this function. Importantly, a recombinant pH1N1 virus containing these 6 amino acid changes in the NS1 protein (pH1N1/NSs-6mut) inhibited host IFN and proinflammatory responses to a greater extent than that with the parental virus (pH1N1/NS1-wt), yet virus titers were not significantly increased in cell cultures or in mouse lungs, and the disease was partially attenuated. The pH1N1/NSs-6mut virus grew similarly to pH1N1/NSs-wt in mouse lungs, but infection with pH1N1/NSs-6mut induced lower levels of proinflammatory cytokines, likely due to a general inhibition of gene expression mediated by the mutated NS1 protein. This lower level of inflammation induced by the pH1N1/NSs-6mut virus likely accounts for the attenuated disease phenotype and may represent a host-virus adaptation affecting influenza virus pathogenesis. IMPORTANCE Seasonal influenza A viruses (IAVs) are among the most common causes of respiratory infections in humans. In addition, occasional pandemics are caused when IAVs circulating in other species emerge in the human population. In 2009, a swine-origin H1N1 IAV (pH1N1) was transmitted to humans, infecting people then and up to the present. It was previously shown that the NS1 protein from the 2009 pandemic H1N1 (pH1N1) virus is not able to inhibit general gene expression. However, currently circulating pH1N1 viruses have evolved to encode 6 amino acid changes (E55K, L90I, I123V, E125D, K131E, and N205S) that allow the NS1 protein of contemporary pH1N1 strains to inhibit host gene expression, which correlates with its ability to interact with CPSF30. Infection with a recombinant pH1N1 virus encoding these 6 amino acid changes (pH1N1/NSs-6mut) induced lower levels of proinflammatory cytokines, resulting in viral attenuation in vivo. This might represent an adaptation of pH1N1 virus to humans. PMID:28637754

Alfalfa mosaic virus replicase proteins, P1 and P2, localize to the tonoplast in the presence of virus RNA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ibrahim, Amr; Present address: Genomics Facility, Agricultural Genetic Engineering Research Institute, Agricultural Research Center, Giza 12619; Hutchens, Heather M.

2012-11-25

To identify the virus components important for assembly of the Alfalfa mosaic virus replicase complex, we used live cell imaging of Arabidopsis thaliana protoplasts that expressed various virus cDNAs encoding native and GFP-fusion proteins of P1 and P2 replicase proteins and full-length virus RNAs. Expression of P1-GFP alone resulted in fluorescent vesicle-like bodies in the cytoplasm that colocalized with FM4-64, an endocytic marker, and RFP-AtVSR2, RabF2a/Rha1-mCherry, and RabF2b/Ara7-mCherry, all of which localize to multivesicular bodies (MVBs), which are also called prevacuolar compartments, that mediate traffic to the lytic vacuole. GFP-P2 was driven from the cytosol to MVBs when expressed withmore » P1 indicating that P1 recruited GFP-P2. P1-GFP localized on the tonoplast, which surrounds the vacuole, in the presence of infectious virus RNA, replication competent RNA2, or P2 and replication competent RNA1 or RNA3. This suggests that a functional replication complex containing P1, P2, and a full-length AMV RNA assembles on MVBs to traffic to the tonoplast.« less

Viruses in maize and Johnsongrass in southern Ohio

USDA-ARS?s Scientific Manuscript database

Two major maize viruses in the United States, Maize dwarf mosaic virus and Maize chlorotic dwarf virus, were first described in Southern Ohio and surrounding regions in the 1960s when they were major problems in maize (Zea mays L.) production. Planting resistant varieties and changing cultural prac...

THE MULTI-OBJECT, FIBER-FED SPECTROGRAPHS FOR THE SLOAN DIGITAL SKY SURVEY AND THE BARYON OSCILLATION SPECTROSCOPIC SURVEY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smee, Stephen A.; Gunn, James E.; Uomoto, Alan

2013-07-12

We present the design and performance of the multi-object fiber spectrographs for the Sloan Digital Sky Survey (SDSS) and their upgrade for the Baryon Oscillation Spectroscopic Survey (BOSS). Originally commissioned in Fall 1999 on the 2.5-m aperture Sloan Telescope at Apache Point Observatory, the spectrographs produced more than 1.5 million spectra for the SDSS and SDSS-II surveys, enabling a wide variety of Galactic and extra-galactic science including the first observation of baryon acoustic oscillations in 2005. The spectrographs were upgraded in 2009 and are currently in use for BOSS, the flagship survey of the third-generation SDSS-III project. BOSS will measuremore » redshifts of 1.35 million massive galaxies to redshift 0.7 and Lyman-alpha absorption of 160,000 high redshift quasars over 10,000 square degrees of sky, making percent level measurements of the absolute cosmic distance scale of the Universe and placing tight constraints on the equation of state of dark energy. The twin multi-object fiber spectrographs utilize a simple optical layout with reflective collimators, gratings, all-refractive cameras, and state-of-the-art CCD detectors to produce hundreds of spectra simultaneously in two channels over a bandpass covering the near ultraviolet to the near infrared, with a resolving power R = \\lambda/FWHM ~ 2000. Building on proven heritage, the spectrographs were upgraded for BOSS with volume-phase holographic gratings and modern CCD detectors, improving the peak throughput by nearly a factor of two, extending the bandpass to cover 360 < \\lambda < 1000 nm, and increasing the number of fibers from 640 to 1000 per exposure. In this paper we describe the original SDSS spectrograph design and the upgrades implemented for BOSS, and document the predicted and measured performances.« less

Mini-Spec: A Compact, Fiber-Coupled, VPH Grating Spectrograph for Small Observatories

NASA Astrophysics Data System (ADS)

Nations, H. L.; Haynes, P.; Brewer, P.

2003-05-01

We report on the development and testing of what we believe to be the first VPH grating based spectrograph developed primarily for use at telescopes of modest aperture. To date, the most common instrument suite for such observatories is typically that of a CCD camera with attached filter wheel. While there is no doubt that a wide range of interesting and good science has been done with such instrumentation, the addition of a robust and easy to operate spectrograph would greatly increase the utility of such installations. While some commercial spectrographs exist for use on small telescopes, the authors have found them to be, with few exceptions, either inefficient, difficult for inexperienced students or amateurs to use, or not remotely operable. Correcting these deficiencies is thus the primary motivation for Mini-Spec. The design of Mini-Spec has been influenced by previous work the authors have done on a full-sized fiber-coupled spectrograph (Nations and Pierce, 2002). Mini-Spec uses some of those original design features, only reduced drastically in size. This size reduction (the spectrograph fits within a 7 inch cube), along with a much more careful choice of some critical components, has resulted in a dramatic reduction in cost. The spectrograph uses a highly efficient 1200 l/mm, 40 mm diameter vph grating on loan from Richard Rallison. Focus, central wavelength selection, and comparison lamps are all controlled via an RS-232 link and a custom Visual Basic GUI. Sample spectra of stellar and non-stellar targets will be presented along with a discussion of research projects admirably suited for this instrument. Funding for equipment has been provided by a NASA EPSCoR grant to PI Ron Canterna. HLN has been partially funded by a Wyoming Space Grant Faculty Fellowship.

A Post-AGB Star in the Small Magellanic Cloud Observed with the Spitzer Infrared Spectrograph

DTIC Science & Technology

2006-10-23

spectral features, MSX SMC 029, in the Small Magellanic Cloud (SMC) usimg the low-resolution modules of the Infrared Spectrograph on the Spitzer Space ...029, in the Small Magellanic Cloud (SMC) using the low-resolution modules of the Infrared Spectrograph on the Spitzer Space Telescope. A cool dust... outer atmosphere expands and pulsates, pushing gas away from the star where it can cool and condense into dust grains. The resulting circumstellar dust

World Reference Center for Arboviruses

DTIC Science & Technology

1994-06-07

NIH in addition to that of this grant. BODY OF REPORT 1. Virus identification. Viruses were identified from Japan, Sudan, Venezuela, Brazil, United...ruled out Zika , tick-borne flaviviruses, and West Nile (probably). There were some monotypic reactions to Tembusu and Pnom Penh bat viruses ...vaccinia viruses immunized mice which resisted homologous virus challenge. The comparable NYVAC construct immunized pigs and markedly reduced viremia

Persistent Zika Virus Detection in Semen in a Traveler Returning to the United Kingdom from Brazil, 2016.

PubMed

Gaskell, Katherine M; Houlihan, Catherine; Nastouli, Eleni; Checkley, Anna M

2017-01-01

Zika virus is normally transmitted by mosquitos, but cases of sexual transmission have been reported. We describe a patient with symptomatic Zika virus infection in whom the virus was detected in semen for 92 days. Our findings support recommendations for 6 months of barrier contraceptive use after symptomatic Zika virus infection.

Characterization of a variant strain of Norwalk virus from a food-borne outbreak of gastroenteritis on a cruise ship in Hawaii.

PubMed Central

Herwaldt, B L; Lew, J F; Moe, C L; Lewis, D C; Humphrey, C D; Monroe, S S; Pon, E W; Glass, R I

1994-01-01

A gastroenteritis outbreak affecting at least 217 (41%) of 527 passengers on a cruise ship was caused by a variant strain of Norwalk virus (NV) that is related to but distinct from the prototype NV strain. Consumption of fresh-cut fruit served at two buffets was significantly associated with illness (P < or = 0.01), and a significant dose-response relationship was evident between illness and the number of various fresh-cut fruit items eaten. Seven (58%) of 12 paired serum specimens from ill persons demonstrated at least fourfold rises in antibody response to recombinant NV capsid antigen. A 32-nm small round-structured virus was visualized by electron microscopy in 4 (29%) of 14 fecal specimens, but none of the 8 specimens that were examined by an enzyme immunoassay for NV antigen demonstrated antigen. Four (40%) of 10 fecal specimens were positive by reverse transcriptase-PCR by using primer pairs selected from the polymerase region of NV. In a 145-bp region, the PCR product shared only 72% nucleotide sequence identity with the reference NV strain and 77% nucleotide sequence identity with Southampton virus but shared 95% nucleotide sequence identity with UK2 virus, a United Kingdom reference virus strain. In addition, the outbreak virus was serotyped as UK2 virus by solid-phase immune electron microscopy. The genetic and antigenic divergence of the outbreak strain from the reference NV strain highlights the need for more broadly reactive diagnostic assays and for improved understanding of the relatedness of the NV group of agents. Images PMID:8027335

GIRAFFE Reaches towards the Stars

NASA Astrophysics Data System (ADS)

2002-07-01

"First Light" of New Powerful Spectrograph at the VLT Summary The first observations of stellar spectra have just been performed with the new GIRAFFE multi-object spectrograph on the ESO Very Large Telescope (VLT) at the Paranal Observatory in Chile. This milestone event was achieved in the early morning of July 3, 2002. It signifies another important step towards the full implementation of the extremely powerful Fibre Large Array Multi-Element Spectrograph (FLAMES) , one of the main instruments for the ESO VLT. This project is co-ordinated by ESO and incorporates many complex components that have been constructed at various research institutions in Europe and Australia. The GIRAFFE spectrograph provides unique possibilities for detailed observations of the properties of individual stars located in our Milky Way galaxy ( PR 16b/02 ) as well as in other galaxies of the Local Group. PR Photo 16a/02 : A series of stellar spectra recorded by GIRAFFE during "First Light" . PR Photo 16b/02 : Details of some of these stellar spectra . FLAMES and GIRAFFE ESO PR Photo 16a/02 ESO PR Photo 16a/02 [Preview - JPEG: 756 x 400 pix - 363k] [Normal - JPEG: 1511 x 800 pix - 1.2M] ESO PR Photo 16b/02 ESO PR Photo 16b/02 [Preview - JPEG: 461 x 400 pix - 196k] [Normal - JPEG: 921 x 800 pix - 606k] Caption : PR Photo 16a/02 : "First Light" test observation with the GIRAFFE spectrograph of about 50 high-quality spectra (10 min exposure at spectral resolution 7,000) of stars in the Milky Way disk, in the early morning of July 3, 2002. The stars have magnitudes of 12 - 16 and are all of solar type. The photo shows part of the image recorded with a 2000 x 4000 pixel CCD detector at the focal plane of the spectrograph. Each stellar spectrum is seen as one vertical line - some of the absorption lines can be seen as dark horizontal features. PR Photo 16b/02 shows a small part of this image. The three strong absorption lines that are visible as horizontal, dark lines in the lower part of the photo are due to the common element Magnesium in the atmospheres of these stars (the Mg b triplet at wavelength 517 nm). The different intensity of the spectra is due to the different brightness of the stars. The multi-object GIRAFFE spectrograph , now installed on the 8.2-m KUEYEN Unit Telescope of ESO's Very Large Telescope (VLT) at the Paranal Observatory (Chile), achieved "First Light" in the early morning hours of July 3, 2002. This complex instrument allows to obtain high-quality spectra of a large variety of celestial objects, from individual stars in the Milky Way and other nearby galaxies, to very distant galaxies. It functions by means of multiple optical fibres that guide the light from the telescope's focal plane into the entry slit of the spectrograph. Here the light is dispersed into its different colours. Anticipating already at this early moment the future, highly effective operation of the new facility, the first data were immediately prepared for astronomical interpretation ("reduced") by means of a dedicated software package ("pipeline"). GIRAFFE and these fibres are an integral part of the advanced Fibre Large Array Multi-Element Spectrograph (FLAMES) facility which also includes the OzPoz positioner and an optical field corrector . It is the outcome of a collaboration between ESO, Observatoire de Paris-Meudon Observatoire de Genève-Lausanne and the Anglo Australian Observatory (AAO) . More details are available in ESO PR 01/02. The principle of this instrument involves the positioning in the telescope's focal plane of a large number of optical fibres. This is done in such a way that each of them guides the light from one particular celestial object towards the spectrograph that records the spectra of all these objects simultaneously. The size of the available field-of-view is no less than about 25 arcmin across, i.e. almost as large as the full moon. The individual fibres are moved and positioned "on the objects" in the field by means of the OzPoz positioner. Different observational modes FLAMES has several different modes of operation. Two of these are of the simple "multi-object" type: each fibre collects the light from one star or galaxy - up to 132 objects can be observed simultaneously, cf. PR 16a/02 . In this respect, GIRAFFE provides absolutely unique possibilities for detailed observations of the properties (age, chemical composition, rotation and space velocity) of individual stars located in the main disk, central bulge or halo of our Milky Way galaxy ( PR 16b/02 ), and also of stars in other galaxies of the Local Group. Another observational mode is known as "3-D spectroscopy" or "integrated field". This consists of obtaining simultaneous spectra of smaller areas of extended objects like galaxies or nebulae. For this, 15 deployable fibre bundles, the so-called Integral Field Units (IFUs) , cf. ESO PR 01/02 , are used. Each IFU is a microscopic, state-of-the-art two-dimensional lens array with an aperture of 3 x 2 arcsec 2 on the sky. It is like an insect's eye, with twenty micro-lenses coupled with optical fibres leading the light recorded at each point in the field to the entry slit of the spectrograph. Unique research opportunities opening The FLAMES facility, once in full operation after further testing and fine-tuning later this year, will enormously increase the possibilities to study stellar physics and the evolution of galaxies , two of the cornerstones in our understanding of the structure and evolution of the Universe. With the great light-gathering capacity of the VLT, FLAMES will be able to gather very comprehensive information about even rather faint objects, enabling the astronomers to study them in a degree of detail so far reserved for brighter, nearby stars. The quality of the first spectra from GIRAFFE, although far from exploiting the ultimate potential of the new facility, fully confirm these expectations. Note [1]: This is a joint Press Release of ESO and the Observatoire de Paris.

Nonstructural proteins nsP3 and nsP4 of Ross River and O'Nyong-nyong viruses: sequence and comparison with those of other alphaviruses.

PubMed

Strauss, E G; Levinson, R; Rice, C M; Dalrymple, J; Strauss, J H

1988-05-01

We have sequenced the nsP3 and nsP4 region of two alphaviruses, Ross River virus and O'Nyong-nyong virus, in order to examine these viruses for the presence or absence of an opal termination codon present between nsP3 and nsP4 in many alphaviruses. We found that Ross River virus possesses an in-phase opal termination codon between nsP3 and nsP4, whereas in O'Nyong-nyong virus this termination codon is replaced by an arginine codon. Previous studies have shown that two other alphaviruses, Sindbis virus and Middelburg virus, possess an opal termination codon separating nsP3 and nsP4 [E.G. Strauss, C.M. Rice, and J.H. Strauss (1983), Proc. Natl. Acad. Sci. USA 80, 5271-5275], whereas Semliki Forest virus possesses an arginine codon in lieu of the opal codon [K. Takkinen (1986), Nucleic Acids Res. 14, 5667-5682]. Thus, of the five alphaviruses examined to date, three possess the opal codon and two do not. Production of nsP4 requires readthrough of the opal codon in those alphaviruses that possess this termination codon and the function of the termination codon may be to regulate the amount of nsP4 produced. It is an open question then as to whether alphaviruses with no termination codon use other mechanisms to regulate the activity of this gene. The nsP4s of these five alphaviruses are highly conserved, sharing 71-76% amino acid sequence similarity, and all five contain the Gly-Asp-Asp motif found in many RNA virus replicases. The nsP3s are somewhat less conserved, sharing 52-73% amino acid sequence similarity throughout most of the protein, but each possesses a nonconserved C-terminal domain of 134 to 246 amino acids of unknown function.

A reassortant H9N2 influenza virus containing 2009 pandemic H1N1 internal-protein genes acquired enhanced pig-to-pig transmission after serial passages in swine.

PubMed

Mancera Gracia, José Carlos; Van den Hoecke, Silvie; Richt, Juergen A; Ma, Wenjun; Saelens, Xavier; Van Reeth, Kristien

2017-05-02

Avian H9N2 and 2009 pandemic H1N1 (pH1N1) influenza viruses can infect pigs and humans, raising the concern that H9N2:pH1N1 reassortant viruses could emerge. Such reassortants demonstrated increased replication and transmissibility in pig, but were still inefficient when compared to pH1N1. Here, we evaluated if a reassortant virus containing the hemagglutinin and neuraminidase of A/quail/Hong Kong/G1/1997 (H9N2) in the A/California/04/2009 (pH1N1) backbone could become better adapted to pigs by serial passaging. The tropism of the original H9N2:pH1N1 (P0) virus was restricted to the nasal mucosa, with no virus detected in the trachea or lungs. Nevertheless, after seven passages the H9N2:pH1N1 (P7) virus replicated in the entire respiratory tract. We also compared the transmissibility of H9N2:pH1N1 (P0), H9N2:pH1N1 (P7) and pH1N1. While only 2/6 direct-contact pigs showed nasal virus excretion of H9N2:pH1N1 (P0) ≥five days, 4/6 direct-contact animals shed the H9N2:pH1N1 (P7). Interestingly, those four animals shed virus with titers similar to those of the pH1N1, which readily transmitted to all six contact animals. The broader tissue tropism and the increased post-transmission replication after seven passages were associated with the HA-D225G substitution. Our data demonstrate that the pH1N1 internal-protein genes together with the serial passages favour H9N2 virus adaptation to pigs.

Ebola virus disease cluster in the United States--Dallas County, Texas, 2014.

PubMed

Chevalier, Michelle S; Chung, Wendy; Smith, Jessica; Weil, Lauren M; Hughes, Sonya M; Joyner, Sibeso N; Hall, Emily; Srinath, Divya; Ritch, Julia; Thathiah, Prea; Threadgill, Heidi; Cervantes, Diana; Lakey, David L

2014-11-21

Since March 10, 2014, Guinea, Liberia, and Sierra Leone have experienced the largest known Ebola virus disease (Ebola) epidemic with approximately 13,000 persons infected as of October 28, 2014. Before September 25, 2014, only four patients with Ebola had been treated in the United States; all of these patients had been diagnosed in West Africa and medically evacuated to the United States for care.

Experimental Study of an Advanced Concept of Moderate-resolution Holographic Spectrographs

NASA Astrophysics Data System (ADS)

Muslimov, Eduard; Valyavin, Gennady; Fabrika, Sergei; Musaev, Faig; Galazutdinov, Gazinur; Pavlycheva, Nadezhda; Emelianov, Eduard

2018-07-01

We present the results of an experimental study of an advanced moderate-resolution spectrograph based on a cascade of narrow-band holographic gratings. The main goal of the project is to achieve a moderately high spectral resolution with R up to 5000 simultaneously in the 4300–6800 Å visible spectral range on a single standard CCD, together with an increased throughput. The experimental study consisted of (1) resolution and image quality tests performed using the solar spectrum, and (2) a total throughput test performed for a number of wavelengths using a calibrated lab monochromator. The measured spectral resolving power reaches values over R > 4000 while the experimental throughput is as high as 55%, which agrees well with the modeling results. Comparing the obtained characteristics of the spectrograph under consideration with the best existing spectrographs, we conclude that the used concept can be considered as a very competitive and cheap alternative to the existing spectrographs of the given class. We propose several astrophysical applications for the instrument and discuss the prospect of creating its full-scale version.

NOAO's next-generation optical spectrograph

NASA Astrophysics Data System (ADS)

Barden, Samuel C.; Harmer, Charles F.; Blakley, Rick D.; Parks, Rachel J.

2000-08-01

The National Optical Astronomy Observatory is developing a new, wide-field, imaging spectrograph for use on its existing 4-meter telescopes. This Next Generation Optical Spectrograph (NGOS) will utilize volume-phase holographic grating technology and will have a mosaiced detector array to image the spectra over a field of view that will be something like 10.5 by 42 arc-minutes on the sky. The overall efficiency of the spectrograph should be quite high allowing it to outperform the current RC spectrograph by factors of 10 to 20 and the Hydra multi-fiber instrument by a facto of fiber to ten per object. The operational range of the instrument will allow observations within the optical and near-IR regions. Spectral resolutions will go from R equals 1000 to at least R equals 5000 with 1.4 arc-second slits. The large size of this instrument, with a beam diameter of 200 mm and an overall length of nearly 3 meters, presents a significant challenge in mounting it at the Cassegrain location of the telescope. Design trades and options that allow it to fit are discussed.

Non-fatal case of Crimean-Congo haemorrhagic fever imported into the United Kingdom (ex Bulgaria), June 2014.

PubMed

Lumley, S; Atkinson, B; Dowall, Sd; Pitman, Jk; Staplehurst, S; Busuttil, J; Simpson, Aj; Aarons, Ej; Petridou, C; Nijjar, M; Glover, S; Brooks, Tj; Hewson, R

2014-07-31

Crimean-Congo haemorrhagic fever (CCHF) was diagnosed in a United Kingdom traveller who returned from Bulgaria in June 2014. The patient developed a moderately severe disease including fever, headaches and petechial rash. CCHF was diagnosed following identification of CCHF virus (CCHFV) RNA in a serum sample taken five days after symptom onset. Sequence analysis of the CCHFV genome showed that the virus clusters within the Europe 1 clade, which includes viruses from eastern Europe.

High-Throughput Screening of Therapeutic Neural Stimulation Targets: Toward Principles of Preventing and Treating Post-Traumatic Stress Disorder

DTIC Science & Technology

2009-09-01

onset and averaged across all excited units tested (mean ± SE). 7 SUPPLEMENTAL EXPERIMENTAL PROCEDURES Virus design and production...to baseline level 355 ± 505 ms later. The level of post -light firing did not vary with repeated light exposure (p > 0.7, paired t- test comparing...High-Throughput Screening of Therapeutic Neural Stimulation Targets: Toward Principles of Preventing and Treating Post - Traumatic Stress Disorder

Curved VPH gratings for novel spectrographs

NASA Astrophysics Data System (ADS)

Clemens, J. Christopher; O'Donoghue, Darragh; Dunlap, Bart H.

2014-07-01

The introduction of volume phase holographic (VPH) gratings into astronomy over a decade ago opened new possibilities for instrument designers. In this paper we describe an extension of VPH grating technology that will have applications in astronomy and beyond: curved VPH gratings. These devices can disperse light while simultaneously correcting aberrations. We have designed and manufactured two different kinds of convex VPH grating prototypes for use in off-axis reflecting spectrographs. One type functions in transmission and the other in reflection, enabling Offnerstyle spectrographs with the high-efficiency and low-cost advantages of VPH gratings. We will discuss the design process and the tools required for modelling these gratings along with the recording layout and process steps required to fabricate them. We will present performance data for the first convex VPH grating produced for an astronomical spectrograph.

Web-based multi-channel analyzer

DOEpatents

Gritzo, Russ E.

2003-12-23

The present invention provides an improved multi-channel analyzer designed to conveniently gather, process, and distribute spectrographic pulse data. The multi-channel analyzer may operate on a computer system having memory, a processor, and the capability to connect to a network and to receive digitized spectrographic pulses. The multi-channel analyzer may have a software module integrated with a general-purpose operating system that may receive digitized spectrographic pulses for at least 10,000 pulses per second. The multi-channel analyzer may further have a user-level software module that may receive user-specified controls dictating the operation of the multi-channel analyzer, making the multi-channel analyzer customizable by the end-user. The user-level software may further categorize and conveniently distribute spectrographic pulse data employing non-proprietary, standard communication protocols and formats.

Development of the MAMA Detectors for the Hubble Space Telescope Imaging Spectrograph

NASA Technical Reports Server (NTRS)

Timothy, J. Gethyn

1997-01-01

The development of the Multi-Anode Microchannel Array (MAMA) detector systems started in the early 1970's in order to produce multi-element detector arrays for use in spectrographs for solar studies from the Skylab-B mission. Development of the MAMA detectors for spectrographs on the Hubble Space Telescope (HST) began in the late 1970's, and reached its culmination with the successful installation of the Space Telescope Imaging Spectrograph (STIS) on the second HST servicing mission (STS-82 launched 11 February 1997). Under NASA Contract NAS5-29389 from December 1986 through June 1994 we supported the development of the MAMA detectors for STIS, including complementary sounding rocket and ground-based research programs. This final report describes the results of the MAMA detector development program for STIS.

Observations of hydrogen-rich supernovae in the first days after explosion and new instruments to study them

NASA Astrophysics Data System (ADS)

Rubin, Adam; PTF

2018-01-01

I will discuss our results studying light curves of hydrogen-rich supernovae during the first few days after explosion. The first days of emission encode important information about the physical system, and it is possible to relate the early-time light curve to the radius of the progenitor star by using shock-cooling models. I will show the first systematic application of these models to data from the Palomar Transient Factory (PTF). We found that R-band data alone at PTF cadence cannot constrain the radius but can constrain the energy per unit mass of the explosion, uncovering new correlations with other supernova observables. We constrained the radii for events with multi-wavelength observations, and for two events observed with the Kepler mission at 30 min cadence. I will discuss improved observing strategies to obtain more constraining results in the future. Some tensions have arisen between our results and the expected radii from identified progenitors of hydrogen-rich supernovae. The resolution of these tensions may be related to the effect of circumstellar material on the light curves, motivating future systematic spectroscopic sequencing of these events. To this end, we have designed a new medium resolution UV-VIS spectrograph. The Multi-Imaging Transient Spectrograph (MITS) is the R~4500 UV-VIS arm of the Son Of X-Shooter (SOXS) spectrograph proposed for ESO’s 3.6 m New Technology Telescope. Our design divides the spectrum into several sub-bands, allowing optimization for each narrow part of the spectrum. We estimate a 50-100% improvement in throughput relative to a classical 4-C echelle design. Our design has passed a preliminary design review and is expected on the telescope in early 2021.

The "+" for CRIRES: enabling better science at infrared wavelength and high spectral resolution at the ESO VLT

NASA Astrophysics Data System (ADS)

Dorn, Reinhold J.; Follert, Roman; Bristow, Paul; Cumani, Claudio; Eschbaumer, Siegfried; Grunhut, Jason; Haimerl, Andreas; Hatzes, Artie; Heiter, Ulrike; Hinterschuster, Renate; Ives, Derek J.; Jung, Yves; Kerber, Florian; Klein, Barbara; Lavaila, Alexis; Lizon, Jean Louis; Löwinger, Tom; Molina-Conde, Ignacio; Nicholson, Belinda; Marquart, Thomas; Oliva, Ernesto; Origlia, Livia; Pasquini, Luca; Paufique, Jérôme; Piskunov, Nikolai; Reiners, Ansgar; Seemann, Ulf; Stegmeier, Jörg; Stempels, Eric; Tordo, Sebastien

2016-08-01

The adaptive optics (AO) assisted CRIRES instrument is an IR (0.92 - 5.2 μm) high-resolution spectrograph was in operation from 2006 to 2014 at the Very Large Telescope (VLT) observatory. CRIRES was a unique instrument, accessing a parameter space (wavelength range and spectral resolution) up to now largely uncharted. It consisted of a single-order spectrograph providing long-slit (40 arcsecond) spectroscopy with a resolving power up to R=100 000. However the setup was limited to a narrow, single-shot, spectral range of about 1/70 of the central wavelength, resulting in low observing efficiency for many scientific programmes requiring a broad spectral coverage. The CRIRES upgrade project, CRIRES+, transforms this VLT instrument into a cross-dispersed spectrograph to increase the simultaneously covered wavelength range by a factor of ten. A new and larger detector focal plane array of three Hawaii 2RG detectors with 5.3 μm cut-off wavelength will replace the existing detectors. For advanced wavelength calibration, custom-made absorption gas cells and an etalon system will be added. A spectro-polarimetric unit will allow the recording of circular and linear polarized spectra. This upgrade will be supported by dedicated data reduction software allowing the community to take full advantage of the new capabilities offered by CRIRES+. CRIRES+ has now entered its assembly and integration phase and will return with all new capabilities by the beginning of 2018 to the Very Large Telescope in Chile. This article will provide the reader with an update of the current status of the instrument as well as the remaining steps until final installation at the Paranal Observatory.

Molecular characterization of Indian rabies virus isolates by partial sequencing of nucleoprotein (N) and phosphoprotein (P) genes.

PubMed

Reddy, G B Manjunatha; Singh, R; Singh, R P; Singh, K P; Gupta, P K; Mahadevan, Anita; Desai, Anita; Shankar, S K; Ramakrishnan, M A; Verma, Rishendra

2011-08-01

Rabies is endemic and an important zoonosis in India. There are very few reports available on molecular epidemiology of rabies virus of Indian origin. In this study to know the dynamics of rabies virus, a total of 41 rabies positive brain samples from dogs, cats, domestic animals, wildlife, and humans from 11 states were subjected to RT-PCR amplification of N gene between nucleotide N521-N1262 (742 bp) and P gene between nucleotide P239-P750 (512 bp). The N gene could be amplified from 30, while P gene from 41 samples, using specific sets of primers. The N gene-based phylogenetic analysis indicated that all Indian virus isolates are genetically closely related with a single cluster under arctic/arctic-like viruses. However, two distinct clusters were realized in P gene-based phylogeny viz., Rabies virus isolates of Punjab and Rabies virus isolates of remaining parts of India (other than Punjab). All the Indian rabies virus isolates were closely related to geography (>95% homology), but not to host species.

Phosphorylation of paramyxovirus phosphoprotein and its role in viral gene expression.

PubMed

Fuentes, Sandra M; Sun, Dengyun; Schmitt, Anthony P; He, Biao

2010-01-01

Paramyxoviruses include many important human and animal pathogens such as measles virus, mumps virus, human parainfluenza viruses, and respiratory syncytial virus, as well as emerging viruses such as Nipah virus and Hendra virus. The paramyxovirus RNA-dependent RNA polymerase consists of the phosphoprotein (P) and the large protein. Both of these proteins are essential for viral RNA synthesis. The P protein is phosphorylated at multiple sites, probably by more than one host kinase. While it is thought that the phosphorylation of P is important for its role in viral RNA synthesis, the precise role of P protein phosphorylation remains an enigma. For instance, it was demonstrated that the putative CKII phosphorylation sites of the P protein of respiratory syncytial virus play a role in viral RNA synthesis using a minigenome replicon system; however, mutating these putative CKII phosphorylation sites within a viral genome had no effect on viral RNA synthesis, leading to the hypothesis that P protein phosphorylation, at least by CKII, does not play a role in viral RNA synthesis. Recently, it has been reported that the phosphorylation state of the P protein of parainfluenza virus 5, a prototypical paramyxovirus, correlates with the ability of P protein to synthesize viral RNA, indicating that P protein phosphorylation does in fact play a role in viral RNA synthesis. Furthermore, host kinases PLK1, as well as AKT1 have been found to play critical roles in paramyxovirus RNA synthesis through regulation of P protein phosphorylation status. Beyond furthering our understanding of paramyxovirus RNA replication, these recent discoveries may also result in a new paradigm in treating infections caused by these viruses, as host kinases that regulate paramyxovirus replication are investigated as potential targets of therapeutic intervention.

Lethality of Bacillus Anthracis Spores Due to Short Duration Heating Measured Using Infrared Spectroscopy

DTIC Science & Technology

2005-03-01

images the light onto the detector at the focal plane (FP). 32 FP L5 HG L4 SH SL L3 NF L2 Figure 10. Spectrograph Stage of Raman Base Unit...the precise intensity at any given time. There was a small red light on the front of the instrument, as indicated in Figure 13, which would glow...Force Base , Ohio APPROVED FOR PUBLIC RELEASE; DISTRIBUTION UNLIMITED. The views expressed in this thesis are those of the author and do not

The Performance and Scientific Rationale for an Infrared Imaging Fourier Transform Spectrograph on a Large Space Telescope

DTIC Science & Technology

1998-06-22

micromirrors . Thus, an IFTS will produce a rich scientific legacy with tremendous potential for serendipity. Table 1 details the capabilities of an IFTS...maintain modulation efficiency. Curves are plotted for resolutions , 105, and 1064R 5 k/dk 5 10 assuming an 8 m diameter primary aperture and a beam splitter...passbands centered at 1.1, 1.3, 1.7, 2.3, and 3.6 mm. Colors are plotted from ; a triangle is plotted at every interval of unit redshift. These curves

Outbreaks of avian influenza A (H5N2), (H5N8), and (H5N1) among birds--United States, December 2014-January 2015.

PubMed

Jhung, Michael A; Nelson, Deborah I

2015-02-06

During December 15, 2014-January 16, 2015, the U.S. Department of Agriculture received 14 reports of birds infected with Asian-origin, highly pathogenic avian influenza A (HPAI) (H5N2), (H5N8), and (H5N1) viruses. These reports represent the first reported infections with these viruses in U.S. wild or domestic birds. Although these viruses are not known to have caused disease in humans, their appearance in North America might increase the likelihood of human infection in the United States. Human infection with other avian influenza viruses, such as HPAI (H5N1) and (H5N6) viruses and (H7N9) virus, has been associated with severe, sometimes fatal, disease, usually following contact with poultry.

The C Terminus of the Polerovirus P5 Readthrough Domain Limits Virus Infection to the Phloem▿

PubMed Central

Peter, Kari A.; Gildow, Frederick; Palukaitis, Peter; Gray, Stewart M.

2009-01-01

Poleroviruses are restricted to vascular phloem tissues from which they are transmitted by their aphid vectors and are not transmissible mechanically. Phloem limitation has been attributed to the absence of virus proteins either facilitating movement or counteracting plant defense. The polerovirus capsid is composed of two forms of coat protein, the major P3 protein and the minor P3/P5 protein, a translational readthrough of P3. P3/P5 is required for insect transmission and acts in trans to facilitate long-distance virus movement in phloem tissue. Specific potato leafroll virus mutants lacking part or all of the P5 domain moved into and infected nonvascular mesophyll tissue when the source-sink relationship of the plant (Solanum sarrachoides) was altered by pruning, with the progeny virus now being transmissible mechanically. However, in a period of months, a phloem-specific distribution of the virus was reestablished in the absence of aphid transmission. Virus from the new phloem-limited infection showed compensatory mutations that would be expected to restore the production of full-length P3/P5 as well as the loss of mechanical transmissibility. The data support our hypothesis that phloem limitation in poleroviruses presumably does not result from a deficiency in the repertoire of virus genes but rather results from P3/P5 accumulation under selection in the infected plant, with the colateral effect of facilitating transmission by phloem-feeding aphid vectors. PMID:19297484

The C terminus of the polerovirus p5 readthrough domain limits virus infection to the phloem.

PubMed

Peter, Kari A; Gildow, Frederick; Palukaitis, Peter; Gray, Stewart M

2009-06-01

Poleroviruses are restricted to vascular phloem tissues from which they are transmitted by their aphid vectors and are not transmissible mechanically. Phloem limitation has been attributed to the absence of virus proteins either facilitating movement or counteracting plant defense. The polerovirus capsid is composed of two forms of coat protein, the major P3 protein and the minor P3/P5 protein, a translational readthrough of P3. P3/P5 is required for insect transmission and acts in trans to facilitate long-distance virus movement in phloem tissue. Specific potato leafroll virus mutants lacking part or all of the P5 domain moved into and infected nonvascular mesophyll tissue when the source-sink relationship of the plant (Solanum sarrachoides) was altered by pruning, with the progeny virus now being transmissible mechanically. However, in a period of months, a phloem-specific distribution of the virus was reestablished in the absence of aphid transmission. Virus from the new phloem-limited infection showed compensatory mutations that would be expected to restore the production of full-length P3/P5 as well as the loss of mechanical transmissibility. The data support our hypothesis that phloem limitation in poleroviruses presumably does not result from a deficiency in the repertoire of virus genes but rather results from P3/P5 accumulation under selection in the infected plant, with the colateral effect of facilitating transmission by phloem-feeding aphid vectors.

Antiviral activity in vitro of two preparations of the herbal medicinal product Sinupret® against viruses causing respiratory infections.

PubMed

Glatthaar-Saalmüller, B; Rauchhaus, U; Rode, S; Haunschild, J; Saalmüller, A

2011-12-15

Sinupret(®), a herbal medicinal product made from Gentian root, Primula flower, Elder flower, Sorrel herb, and Verbena herb is frequently used in the treatment of acute and chronic rhinosinusitis and respiratory viral infections such as common cold. To date little is known about its potential antiviral activity. Therefore experiments have been performed to measure the antiviral activity of Sinupret(®) oral drops (hereinafter referred to as "oral drops") and Sinupret(®) dry extract (hereinafter referred to as "dry extract"), in vitro against a broad panel of both enveloped and non-enveloped human pathogenic RNA and DNA viruses known to cause infections of the upper respiratory tract: influenza A, Chile 1/83 (H1N1) virus (FluA), Porcine Influenza A/California/07/2009 (H1N1) virus (pFluA), parainfluenza type 3 virus (Para 3), respiratory syncytial virus, strain Long (RSV), human rhinovirus B subtype 14 (HRV 14), coxsackievirus subtype A9 (CA9), and adenovirus C subtype 5 (Adeno 5). Concentration-dependent antiviral activity (EC(50) between 13.8 and 124.8 μg/ml) of Sinupret(®) was observed against RNA as well as DNA viruses independent of a viral envelope. Remarkable antiviral activity was shown against Adeno 5, HRV 14 and RSV in which dry extract was significantly superior to oral drops. This could be ascertained with different assays as plaque-reduction assays in plaque forming units (PFU), the analyses of a cytopathogenic effect (CPE) and with enzyme immunoassays (ELISA) to determine the amount of newly synthesised virus. Our results demonstrate that Sinupret(®) shows a broad spectrum of antiviral activity in vitro against viruses commonly known to cause respiratory infections. Copyright © 2011 Elsevier GmbH. All rights reserved.

West nile virus and other arboviral diseases - United States, 2013.

PubMed

Lindsey, Nicole P; Lehman, Jennifer A; Staples, J Erin; Fischer, Marc

2014-06-20

Arthropod-borne viruses (arboviruses) are transmitted to humans primarily through the bites of infected mosquitoes and ticks. West Nile virus (WNV) is the leading cause of domestically acquired arboviral disease in the United States. However, several other arboviruses also cause sporadic cases and seasonal outbreaks of neuroinvasive disease (i.e., meningitis, encephalitis, and acute flaccid paralysis). This report summarizes surveillance data reported to CDC in 2013 for WNV and other nationally notifiable arboviruses, excluding dengue. Forty-seven states and the District of Columbia reported 2,469 cases of WNV disease. Of these, 1,267 (51%) were classified as WNV neuroinvasive disease, for a national incidence of 0.40 per 100,000 population. After WNV, the next most commonly reported cause of arboviral disease was La Crosse virus (LACV) (85 cases), followed by Jamestown Canyon virus (JCV), Powassan virus (POWV), and eastern equine encephalitis virus (EEEV) (eight). WNV and other arboviruses continue to cause serious illness in substantial numbers of persons annually. Maintaining surveillance remains important to help direct and promote prevention activities.

Past, Present, and Possible Future Human Infection with Influenza Virus A Subtype H7

PubMed Central

Belser, Jessica A.; Bridges, Carolyn B.; Katz, Jacqueline M.

2009-01-01

Influenza A subtype H7 viruses have resulted in >100 cases of human infection since 2002 in the Netherlands, Italy, Canada, the United States, and the United Kingdom. Clinical illness from subtype H7 infection ranges from conjunctivitis to mild upper respiratory illness to pneumonia. Although subtype H7 infections have resulted in a smaller proportion of hospitalizations and deaths in humans than those caused by subtype H5N1, some subtype H7 strains appear more adapted for human infection on the basis of their virus-binding properties and illness rates among exposed persons. Moreover, increased isolation of subtype H7 influenza viruses from poultry and the ability of this subtype to cause severe human disease underscore the need for continued surveillance and characterization of these viruses. We review the history of human infection caused by subtype H7. In addition, we discuss recently identified molecular correlates of subtype H7 virus pathogenesis and assess current measures to prevent future subtype H7 virus infection. PMID:19523282

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Ting; Ooi, Amy; Lee, Hooi Chen

An orthorhombic crystal form of the SARS CoV main proteinase diffracting to a resolution of 1.9 Å is reported. The conformation of residues in the catalytic site indicates an active enzyme. The 34 kDa main proteinase (M{sup pro}) from the severe acute respiratory syndrome coronavirus (SARS-CoV) plays an important role in the virus life cycle through the specific processing of viral polyproteins. As such, SARS-CoV M{sup pro} is a key target for the identification of specific inhibitors directed against the SARS virus. With a view to facilitating the development of such compounds, crystals were obtained of the enzyme at pHmore » 6.5 in the orthorhombic space group P2{sub 1}2{sub 1}2 that diffract to a resolution of 1.9 Å. These crystals contain one monomer per asymmetric unit and the biologically active dimer is generated via the crystallographic twofold axis. The conformation of the catalytic site indicates that the enzyme is active in the crystalline form and thus suitable for structure-based inhibition studies.« less

Persistence of vaccine-derived polioviruses among immunodeficient persons with vaccine-associated paralytic poliomyelitis.

PubMed

Khetsuriani, Nino; Prevots, D Rebecca; Quick, Linda; Elder, Melissa E; Pallansch, Mark; Kew, Olen; Sutter, Roland W

2003-12-15

To estimate long-term poliovaccine virus persistence among immunodeficient patients with vaccine-associated paralytic poliomyelitis (iVAPP), cases reported in the United States during 1975-1997 were reviewed, with subsequent follow-up and virological testing. Six (16.2%) of 37 subjects excreted poliovaccine viruses for > or =6 months. Partial genomic sequencing of their available poliovirus isolates showed considerable divergence from the prototype Sabin strain in all cases. Poliovirus persistence declined over time since the last oral poliovaccine dose: at 6 months, 19.4%; 1 year, 14.3%; 5 years, 4%; and 10 years, 0% (P<.05) of patients. Despite the high prevalence of poliovaccine virus persistence among patients with iVAPP, this group appears to be an unlikely source of poliovirus reintroduction in developed countries because of the rarity and high fatality rate of iVAPP and the possible spontaneous clearance of polioviruses. These results are important for developing "endgame" strategies for the Global Poliomyelitis Eradication Program.

History of Mosquitoborne Diseases in the United States and Implications for New Pathogens.

PubMed

Moreno-Madriñán, Max J; Turell, Michael

2018-05-01

The introduction and spread of West Nile virus and the recent introduction of chikungunya and Zika viruses into the Americas have raised concern about the potential for various tropical pathogens to become established in North America. A historical analysis of yellow fever and malaria incidences in the United States suggests that it is not merely a temperate climate that keeps these pathogens from becoming established. Instead, socioeconomic changes are the most likely explanation for why these pathogens essentially disappeared from the United States yet remain a problem in tropical areas. In contrast to these anthroponotic pathogens that require humans in their transmission cycle, zoonotic pathogens are only slightly affected by socioeconomic factors, which is why West Nile virus became established in North America. In light of increasing globalization, we need to be concerned about the introduction of pathogens such as Rift Valley fever, Japanese encephalitis, and Venezuelan equine encephalitis viruses.

Impact of extrinsic incubation temperature and virus exposure on vector competence of Culex pipiens quinquefasciatus Say (Diptera: Culicidae) for West Nile virus.

PubMed

Richards, Stephanie L; Mores, Christopher N; Lord, Cynthia C; Tabachnick, Walter J

2007-01-01

Culex pipiens quinquefasciatus Say mosquitoes from a laboratory colony were exposed to artificial blood meals containing West Nile virus (WNV) and held at incubation temperatures approximating average daily temperatures that occur during Florida arboviral periods. Mosquitoes fed blood meals containing 6.2 logs plaque-forming units (pfu) WNV/mL and held at 25 degrees C, 28 degrees C, or 30 degrees C for 13 days exhibited significantly different rates of infection (30%, 52%, 93%) and dissemination (33%, 22%, 81%) across temperatures. In a separate experiment, Cx. p. quinquefasciatus mosquitoes were provided artificial blood meals with graded doses of WNV from 3.7 to 5.8 logs pfu/mL and maintained at 28 degrees C for 13 days. Rates of infection increased as a function of virus dose, but neither body titers nor dissemination rates were significantly different for mosquitoes that were infected by ingesting different amounts of WNV. Our findings indicate that efficiency of WNV infection and dissemination, and thereby transmission, in Cx. p. quinquefasciatus populations similar to our tested colony may also be diminished when fed blood meals containing less than 5.8 logs pfu WNV/mL and when environmental temperature falls below 30 degrees C. The relationship between the infection rate and dissemination rate changed at different temperatures. This relationship is likely complex and dependent on diverse interactions between factors such as incubation temperature and viremia, which should also be assessed for field populations.

Up-Regulation of Pro-Inflammatory Cytokines and Chemokine Production in Avian Influenza H9N2 Virus-Infected Human Lung Epithelial Cell Line (A549).

PubMed

Farzin, Hamidreza; Toroghi, Reza; Haghparast, Alireza

2016-01-01

Influenza H9N2 virus mostly infects avian species but poses a potential health risk to humans. Little is known about the mammalian host immune responses to H9N2 virus. To obtain insight into the innate immune responses of human lung epithelial cells to the avian H9N2 virus, the expressions of pro-inflammatory cytokines and chemokine in the human airway epithelial cells infected with avian H9N2 virus were examined by real-time quantitative reverse transcription polymerase chain reaction (qRT-PCR) and enzyme-linked immunosorbent assay (ELISA). H9N2 virus was able to cultivate in the human lung epithelial cell line (A549) and stimulate production of pro-inflammatory cytokines (IL-1β, IL-6) and chemokine (IL-8). Expressions of cytokine genes were up-regulated to a significantly higher level for IL-1β (p < 0.01), IL-6 (p < 0.01 after 12 hours and p < 0.05 after 24 hours) and IL-8 (p < 0.01 after 12 hours and p < 0.001 after 24 hours) in virus-cultured A549 cells as compared with non-virus-cultured cells. The amount of IL-6 and IL-1β proteins secreted into the culture medium was also increased after virus culture infection of A549 cell line compared to non-virus-cultured A549 cells and were significant in both IL-1β (p < 0.05 in 18 hours and p < 0.001 in 24-48 hours harvested supernatant) and IL-6 (p < 0.001). Silencing the p65 component of NF-κB in A549 cells suppressed the stimulatory effects of influenza virus on secretion of pro-inflammatory cytokines and chemokine. The findings in this study will broaden our understanding of host innate immune mechanisms and the pathogenesis of H9N2 influenza viruses in human respiratory epithelium.

Comparison of the Outcomes of Individuals With Medically Attended Influenza A and B Virus Infections Enrolled in 2 International Cohort Studies Over a 6-Year Period: 2009-2015.

PubMed

Dwyer, Dominic E; Lynfield, Ruth; Losso, Marcelo H; Davey, Richard T; Cozzi-Lepri, Alessandro; Wentworth, Deborah; Uyeki, Timothy M; Gordin, Fred; Angus, Brian; Qvist, Tavs; Emery, Sean; Lundgren, Jens; Neaton, James D

2017-01-01

Outcome data from prospective follow-up studies comparing infections with different influenza virus types/subtypes are limited. Demographic, clinical characteristics and follow-up outcomes for adults with laboratory-confirmed influenza A(H1N1)pdm09, A(H3N2), or B virus infections were compared in 2 prospective cohorts enrolled globally from 2009 through 2015. Logistic regression was used to compare outcomes among influenza virus type/subtypes. Of 3952 outpatients, 1290 (32.6%) had A(H1N1)pdm09 virus infection, 1857 (47.0%) had A(H3N2), and 805 (20.4%) had influenza B. Of 1398 inpatients, 641 (45.8%) had A(H1N1)pdm09, 532 (38.1%) had A(H3N2), and 225 (16.1%) had influenza B. Outpatients with A(H1N1)pdm09 were younger with fewer comorbidities and were more likely to be hospitalized during the 14-day follow-up (3.3%) than influenza B (2.2%) or A(H3N2) (0.7%; P < .0001). Hospitalized patients with A(H1N1)pdm09 (20.3%) were more likely to be enrolled from intensive care units (ICUs) than those with A(H3N2) (11.3%) or B (9.8%; P < .0001). However, 60-day follow-up of discharged inpatients showed no difference in disease progression ( P = .32) or all-cause mortality ( P = .30) among influenza types/subtypes. These findings were consistent after covariate adjustment, in sensitivity analyses, and for subgroups defined by age, enrollment location, and comorbidities. Outpatients infected with influenza A(H1N1)pdm09 or influenza B were more likely to be hospitalized than those with A(H3N2). Hospitalized patients infected with A(H1N1)pdm09 were younger and more likely to have severe disease at study entry (measured by ICU enrollment), but did not have worse 60-day outcomes.

Comparison of the Outcomes of Individuals With Medically Attended Influenza A and B Virus Infections Enrolled in 2 International Cohort Studies Over a 6-Year Period: 2009–2015

PubMed Central

Lynfield, Ruth; Losso, Marcelo H; Davey, Richard T; Cozzi-Lepri, Alessandro; Wentworth, Deborah; Uyeki, Timothy M; Gordin, Fred; Angus, Brian; Qvist, Tavs; Emery, Sean; Lundgren, Jens; Neaton, James D; Aagaard, Bitten; Borges, Álvaro H D; Cozzi-Lepri, Alessandro; Eid, Marius; Jansson, Per O; Jeppesen, Marianne; Joensen, Zillah Maria; Pedersen, Ruth Kjærgaard; Lundgren, Jens; Nielsen, Birgit Riis; Pearson, Mary; Peters, Lars; Qvist, Tavs; Angus, Brian; Babiker, Abdel; Bennett, Rachel; Braimah, Nafisah; Collaco-Moraes, Yolanda; Cursley, Adam; Hudson, Fleur; Pett, Sarah; Russell, Charlotte; Webb, Helen; Carey, Dianne; Courtney-Rodgers, David; Emery, Sean; Shaw, Pamela; Gordin, Fred; Sanchez, Adriana; Standridge, Barbara; Vjecha, Michael; Brekke, Kate; Campbell, Megan; Denning, Eileen; DuChene, Alain; Engen, Nicole; George, Michelle; Harrison, Merrie; Neaton, James D; Nelson, Ray; Quan, Siu-Fun; Schultz, Terri; Wentworth, Deborah; Baxter, John; Brown, Shawn; Hoover, Marie; Beigel, John; Davey, Richard T; Dewar, Robin; Gover, Erin; McConnell, Rose; Metcalf, Julia; Natarajan, Ven; Rehman, Tauseef; Voell, Jocelyn; Dwyer, Dominic E; Kok, Jen; Uyeki, Timothy M; Munroe, David; Aguila, Damian; Alzogaray, Maria Fernanda; Ballesteros, Maria Fernanda; Barcan, Laura; Barcelona, Laura; Belloso, Waldo; Berdiñas, Veronica; Bonvehi, Pablo; Caeiro, Juan Pablo; Cisneros, Veronica; Crinejo, Ana; David, Daniel; Doldan, Luz; Ebenrstejin, Juan; Lipari, Flavio; Lopardo, Ana; Lopardo, Gustavo; Losso, Marcelo; Lucchetti, Pablo; Lupo, Sergio; Macias, Laura Moreno; de Tesco, Alejandra Moricz; Mykietiuk, Analia; Nannini, Estaban; Nieto, Gabriel; Nieto, Laura; Peroni, Luciana; Retta, Ignacio; Rodriguez, Patricia; Sanchez, Marisa; Sanchez, Pablo; de Paz Sierra, Mariana; Tavella, Silvina; Temporiti, Elena; Trape, Liliana; Vieni, Ines; Warley, Eduardo; Yahni, Diego; Zarate, Abel Humberto; Avihingsanon, Anchalee; Charoentonpuban, Kanlaya; Chetchotisakd, Ploenchan; Kaewon, Peeraporn; Laopraynak, Naphassanant; Manosuthi, Weerawat; Pussadee, Kanitta; Putcharoen, Opass; Ruxrungtham, Kiat; Suwanpimonkul, Gompol; Ubolyam, Sasiwimol; Arduino, Roberto; Atkinson, Barbara; Aulicino, Taryn M; Baker, Jason V; Bardascino, Cindy; Bass, Caitlin; Baxter, John D; Beilke, Mark; Bentley, Beverly D; Lee Bertrand, Mary; Brown, Ann B; Carbonneau, June; Cindrich, Richard; Coburn, Patty; Cohen, Calvin J; Clark, Linda; Cummins, Shirley; Dassow, Paul; DeHovitz, Jack A; Dharan, Nila J; Faber, Leslie; Farrough, Marti; Freiberg, Matthew; Gardner, Edward; Jo Garrett, Kimberly; Geisler, Christiane; Glesby, Marshall; Green, Julia; Grenade, Joanne; Gunderson, Edie; Gunter, John; Ham, Kirsis; Holman, Susan; Hughes, Valery; Hurt, Christopher; Johnson, Mary; Koerbel, Glory; Koletar, Susan; Lan, Audrey; MacArthur, Rodger; Marcus, Cheryl; Markowitz, Norm; Martinez, Maria Laura; McLaughlin, Karen; Nahra, Raquel; Nettles, Mary Jane; Nixon, Daniel; Novak, Richard; Nuffer, Kathleen; Olivet, Hannah B; Omotosho, Bola; Paez, Armando P; Paez-Quinde, Marta; Parker, Sonija; Patil, Namrata; Polenakovik, Hari; Powell, Sandra; Prosser, Rachel A; Reilly, Nancy A; Riska, Paul F; Rizza, Stacey; Schooley, Robert; Schwarber, Marla; Scott, James; Simon, Gary L; Sivoravong, Jon; Skiest, Daniel J; Solorzano, Clemencia; Sondengam, Rita; Swanson, Nicole; Tedaldi, Ellen; Temesgen, Zelalem; Thomas, Doug; Thron, Bill; Traverse, Colleen; Uddin, David E; Uslan, Daniel Z; Vasco, Marina; Vaughan, William M; Vecino, Isabel; Wade, Barbara; Walker, Catrice; Watson, Kathy; Watson, Vicky; Wohl, David; Wolfe, Cameron R; Andry, Leslie; Bielen, Mireille; Clumeck, Nathan; Florence, Eric; Kabeya, Kabamba; Sagaer, Jolanthe; Weckx, Jozef; Anagnostou, Olga; Antoniadou, Anastasia; Daikos, George; Gioukari, Vicky; Kalomenidis, Ioannis; Kantzanou, Maria; Koratzanis, Georgios; Koulouris, Nikolaos; Maltezos, Efstratios; Metallidis, Symeon; Polixronopoulos, Vlassis; Sambatakou, Helen; Skoutelis, Athanasios; Touloumi, Giota; Vasilopoulos, Nikolaos; Bloch, Mark; Cunningham, Nicky; Dwyer, Dominic E; Edwards, Sian; Elliott, Julian; Garlick, Jill; Habel, Philip; Kilkenny, Fiona; Lau, Helen; MacRae, Karen; McBride, John; Moore, Richard; Prone, Isabel; Ram, Ristila; Richmond, Sue; Roth, Norm; Meng Soo, Tuck; Jo-Anne, Thompson; Vincent, Trina; Vlakahis, Emanuel; Woolstencroft, Rachel; Chadwick, David; Clarke, Tristan; Democratis, Jane; Dockrell, David; Heyderman, Robert; Jeffs, Ben; Kutter, Stefan; Llewelyn, Martin; Minton, Jane; Newport, Melanie; Price, Ashley; Benites, Carlos; Castillo, Raul; Chinchay, Romina; Cornelio, Eva; Guevara, Maria; Gutierrez, Luis; Hidalgo, Jose; La Rosa, Alberto; Pinedo, Yvett; Saenz, Maria; Vega, Juan; Baadegaard, Bente; Bach, Karen; Collins, Philippa; Gerstoft, Jan; Hergens, Lene; Jensen, Lene Pors; Joensen, Zillah Maria; Kronborg, Gitte; Loftheim, Iben Rose; Nielsen, Henrik; Oestergaard, Lars; Pedersen, Court; Stauning Pedersen, Jens Aage; Yehdego, Yordanos; Bergmann, Frank; Boesecke, Christoph; Bogner, Johannes R; Brockmeyer, Norbert; Czaja-Harder, Christine; Draenert, Rika; Fätkenheuer, Gerd; Klinker, Hartwig; Kümmerle, Tim; Lehmann, Clara; Müller, Vera; Plettenberg, Andreas; Rockstroh, Jürgen; Schlabe, Stefan; E Schmidt, Wolfgang; Schürmann, Dirk; Schüttfort, Gundolf; Seybold, Ulrich; Stephan, Christoph; Stoehr, Albrecht; Tillmann, Klaus; Wiebecke, Susanne; Wolf, Timo; Arribas, Jose; Carbone, Javier; Fernández Cruz, Eduardo; Dalmau, David; Estrada, Vincente; Herrero, Patricia; Knobel, Hernando; López, Paco; Montejano, Rocío; Sans Moreno, José; Ramón Paño, José; Portas, Begoña; Rodrigo, Maria; Romero, Pilar; Sánchez-Sendín, Domingo; Soriano, Vincente; Bakowska, Elzbieta; Horban, Andrzej Jerzy; Knysz, Brygida; Kowalska, Karolina Pyziak; Zubkiewicz-Zarebska, Anna; Kase, Kerstin; Mülle, Helen; Zilmer, Kai; Allendes, Gladys; Flores, Jimena; Northland, Rebeka; Perez, Carlos; Velasco, Isabel; Wolff, Marcelo; Chu, Man-Yee; Wu, Tak-chiu; Burgmann, Heinz; Tobudic, Selma; Imahashi, Mayumi; Imamura, Junji; Iwatani, Yasumasa; Kogure, Ayumi; Nakahata, Masashi; Sugiura, Wataru; Yokomaku, Yoshiyuki; Maagaard, Anne

2017-01-01

Abstract Background Outcome data from prospective follow-up studies comparing infections with different influenza virus types/subtypes are limited. Methods Demographic, clinical characteristics and follow-up outcomes for adults with laboratory-confirmed influenza A(H1N1)pdm09, A(H3N2), or B virus infections were compared in 2 prospective cohorts enrolled globally from 2009 through 2015. Logistic regression was used to compare outcomes among influenza virus type/subtypes. Results Of 3952 outpatients, 1290 (32.6%) had A(H1N1)pdm09 virus infection, 1857 (47.0%) had A(H3N2), and 805 (20.4%) had influenza B. Of 1398 inpatients, 641 (45.8%) had A(H1N1)pdm09, 532 (38.1%) had A(H3N2), and 225 (16.1%) had influenza B. Outpatients with A(H1N1)pdm09 were younger with fewer comorbidities and were more likely to be hospitalized during the 14-day follow-up (3.3%) than influenza B (2.2%) or A(H3N2) (0.7%; P < .0001). Hospitalized patients with A(H1N1)pdm09 (20.3%) were more likely to be enrolled from intensive care units (ICUs) than those with A(H3N2) (11.3%) or B (9.8%; P < .0001). However, 60-day follow-up of discharged inpatients showed no difference in disease progression (P = .32) or all-cause mortality (P = .30) among influenza types/subtypes. These findings were consistent after covariate adjustment, in sensitivity analyses, and for subgroups defined by age, enrollment location, and comorbidities. Conclusions Outpatients infected with influenza A(H1N1)pdm09 or influenza B were more likely to be hospitalized than those with A(H3N2). Hospitalized patients infected with A(H1N1)pdm09 were younger and more likely to have severe disease at study entry (measured by ICU enrollment), but did not have worse 60-day outcomes. PMID:29308401

Ebola virus disease: What clinicians in the United States need to know

PubMed Central

Fischer, William A.; Uyeki, Timothy M.; Tauxe, Robert V.

2015-01-01

In March 2014 the World Health Organization was notified of an outbreak of Ebola virus disease (EVD) in the forest region of Guinea. Over the subsequent 8 months, this outbreak has become the most devastating Ebola epidemic in history with 21,296 infections and 8,429 deaths. The recent introduction of Ebola into noncontiguous countries including the United States from infected travelers highlights the importance of preparedness of all healthcare providers. Early identification and rapid isolation of patients suspected of being infected with Ebola virus is critical to limiting the spread of this virus. Additionally, enhanced understanding of Ebola case definitions, clinical presentation, treatment and infection control strategies will improve the ability of healthcare providers to safe care for patients with Ebola virus disease. PMID:26116335

bHROS: A New High-Resolution Spectrograph Available on Gemini South

NASA Astrophysics Data System (ADS)

Margheim, S. J.; Gemini bHROS Team

2005-12-01

The Gemini bench-mounted High-Resolution Spectrograph (bHROS) is available for science programs beginning in 2006A. bHROS is the highest resolution (R=150,000) optical echelle spectrograph optimized for use on an 8-meter telescope. bHROS is fiber-fed via GMOS-S from the Gemini South focal plane and is available in both a dual-fiber Object/Sky mode and a single (larger) Object-only mode. Instrument characteristics and sample data taken during commissioning will be presented.

Viraemia and Ebola virus secretion in survivors of Ebola virus disease in Sierra Leone: a cross-sectional cohort study.

PubMed

Green, Edward; Hunt, Luke; Ross, J C Gareth; Nissen, Nina Marie; Curran, Tanya; Badhan, Anjna; Sutherland, Katherine A; Richards, Jade; Lee, James S; Allen, Samuel H; Laird, Steven; Blackman, Mandy; Collacott, Ian; Parker, Paul A; Walbridge, Andrew; Phillips, Rebecca; Sellu, Sia Jammie; Dama, Agnes; Sheriff, Alpha Karim; Zombo, Joseph; Ngegba, Doris; Wurie, Alieh H; Checchi, Francesco; Brooks, Timothy J

2016-09-01

In survivors of Ebola virus disease, clinical sequelae including uveitis, arthralgia, and fatigue are common and necessitate systematic follow-up. However, the infection risk to health-care providers is poorly defined. Here we report Ebola virus RT-PCR data for body site and fluid samples from a large cohort of Ebola virus survivors at clinic follow-up. In this cross-sectional cohort study, consecutive survivors of Ebola virus disease attending Kerry Town survivor clinic (Freetown, Sierra Leone), who had been discharged from the Kerry Town Ebola treatment unit, were invited to participate. We collected and tested axillary, blood, conjunctival, forehead, mouth, rectal, semen, urine, and vaginal specimens for presence of Ebola virus using RT-PCR. We regarded samples to be positive for Ebola virus disease if the cycle threshold was 40 or lower. We collected demographic data from survivors of their age, sex, time since discharge from the treatment unit, and length of acute admission in the Ebola treatment unit using anonymised standard forms. Between April 2, and June 16, 2015, of 151 survivors of Ebola virus disease invited to participate, 112 (74%) provided consent. The median age of participants was 21·5 years (IQR 14-31·5) with 34 (30%) participants younger than 16 years. 50 (45%) of 112 participants were male. We tested a total of 555 specimens: 103 from the axilla, 93 from blood, 92 from conjunctiva, 54 from forehead, 105 from mouth, 17 from the rectum, one from semen, 69 from urine, and 21 from the vagina. The median time from Ebola treatment unit discharge to specimen collection was 142 days (IQR 127-159). 15 participants had a total of 74 swabs taken less than 100 days from discharge. The semen sample from one participant tested positive for Ebola virus at 114 days after discharge from the treatment unit; specimens taken from the axilla, blood, conjunctiva, forehead, mouth, rectum, and urine of the same participant tested negative. All specimens from the other 111 participants tested negative. Patients recovering from Ebola virus disease who do not meet the case definition for acute disease pose a low infection risk to health-care providers 6 weeks after clearance of viraemia. Personal protective equipment after this time might be limited to standard barrier precautions, unless contact with fluids from sanctuary sites is envisaged. Save the Children International, Public Health England. Copyright © 2016 Elsevier Ltd. All rights reserved.

Seroprevalence of Alkhurma and other hemorrhagic fever viruses, Saudi Arabia.

PubMed

Memish, Ziad A; Albarrak, Ali; Almazroa, Mohammad A; Al-Omar, Ibrahim; Alhakeem, Rafat; Assiri, Abdullah; Fagbo, Shamsudeen; MacNeil, Adam; Rollin, Pierre E; Abdullah, Nageeb; Stephens, Gwen

2011-12-01

A 2009 deployment of military units from several Saudi Arabian provinces to Jazan Province, Saudi Arabia, enabled us to evaluate exposure to Alkhurma, Crimean-Congo, dengue, and Rift Valley hemorrhagic fever viruses. Seroprevalence to all viruses was low; however, Alkhurma virus seroprevalence was higher (1.3%) and less geographically restricted than previously thought.

Scanning mutagenesis studies reveal a potential intramolecular interaction within the C-terminal half of dengue virus NS2A involved in viral RNA replication and virus assembly and secretion.

PubMed

Wu, Ren-Huang; Tsai, Ming-Han; Chao, Day-Yu; Yueh, Andrew

2015-04-01

The NS2A protein of dengue virus (DENV) has eight predicted transmembrane segments (pTMSs; pTMS1 to pTMS8). NS2A has been shown to participate in RNA replication, virion assembly, and the host antiviral response. However, the role of the amino acid residues within the pTMS regions of NS2A during the virus life cycle is poorly understood. In the study described here, we explored the function of DENV NS2A by introducing a series of double or triple alanine substitutions into the C-terminal half (pTMS4 to pTMS8) of NS2A in the context of a DENV infectious clone or subgenomic replicon. Fourteen (8 within pTMS8) of 35 NS2A mutants displayed a lethal phenotype due to impairment of RNA replication by a replicon assay. Three NS2A mutants with mutations within pTMS7, the CM20, CM25, and CM27 mutants, displayed similar phenotypes, low virus yields (>100-fold reduction), wild-type-like replicon activity, and low infectious virus-like particle yields by transient trans-packaging experiments, suggesting a defect in virus assembly and secretion. The sequencing of revertant viruses derived from CM20, CM25, and CM27 mutant viruses revealed a consensus reversion mutation, leucine (L) to phenylalanine (F), at codon 181 within pTMS7. The introduction of an L181F mutation into a full-length NS2A mutant, i.e., the CM20, CM25, and CM27 constructs, completely restored wild-type infectivity. Notably, L181F also substantially rescued the other severely RNA replication-defective mutants with mutations within pTMS4, pTMS6, and pTMS8, i.e., the CM2, CM3, CM13, CM31, and CM32 mutants. In conclusion, the results revealed the essential roles of pTMS4 to pTMS8 of NS2A in RNA replication and/or virus assembly and secretion. The intramolecular interaction between pTMS7 and pTMS4, pTMS6, or pTMS8 of the NS2A protein was also implicated. The reported characterization of the C-terminal half of dengue virus NS2A is the first comprehensive mutagenesis study to investigate the function of flavivirus NS2A involved in the steps of the virus life cycle. In particular, detailed mapping of the amino acid residues within the predicted transmembrane segments (pTMSs) of NS2A involved in RNA replication and/or virus assembly and secretion was performed. A revertant genetics study also revealed that L181F within pTMS7 is a consensus reversion mutation that rescues both RNA replication-defective and virus assembly- and secretion-defective mutants with mutations within the other three pTMSs of NS2A. Collectively, these findings elucidate the role played by NS2A during the virus life cycle, possibly through the intricate intramolecular interaction between pTMS7 and other pTMSs within the NS2A protein. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Characterization of Avian H9N2 Influenza Viruses from United Arab Emirates 2000 to 2003

PubMed Central

Aamir, U. B.; Wernery, Ulrich; Ilyushina, N.; Webster, R. G.

2009-01-01

Our aim was to establish the phylogenetic relation of H9N2 avian viruses in the Middle East to other Asian H9N2 lineages by characterization of 7 viruses isolated from United Arab Emirates (2000-2003). All these viruses had an additional basic amino acid at the hemagglutinin-connecting peptide; 6 contained a mutation associated with increased affinity toward human-like sialic acid substrates. The viruses' surface glycoproteins and most internal genes were >90% similar to those of A/Quail/Hong Kong/G1/97 (H9N2) lineage. The hemadsorbing site of neuraminidase had up to 4 amino acid substitutions, as do human pandemic viruses. M2 sequence analysis revealed amino acid changes at 2 positions, with increasing resistance to amantadine in cell culture. They replicated efficiently in inoculated chickens and were successfully transmitted to contacts. They continue to maintain H5N1-like genes and may augment the spread of H5N1 viruses through regional co-circulation and inapparent infection. These viruses may present as potential pandemic candidates themselves. PMID:17157891

West Nile Virus and Other Nationally Notifiable Arboviral Diseases - United States, 2014.

PubMed

Lindsey, Nicole P; Lehman, Jennifer A; Staples, J Erin; Fischer, Marc

2015-09-04

Arthropod-borne viruses (arboviruses) are transmitted to humans primarily through the bites of infected mosquitoes and ticks. West Nile virus (WNV) is the leading cause of domestically acquired arboviral disease in the United States (1). However, several other arboviruses also cause sporadic cases and seasonal outbreaks. This report summarizes surveillance data reported to CDC in 2014 for WNV and other nationally notifiable arboviruses, excluding dengue. Forty-two states and the District of Columbia (DC) reported 2,205 cases of WNV disease. Of these, 1,347 (61%) were classified as WNV neuroinvasive disease (e.g., meningitis, encephalitis, or acute flaccid paralysis), for a national incidence of 0.42 cases per 100,000 population. After WNV, the next most commonly reported cause of arboviral disease was La Crosse virus (80 cases), followed by Jamestown Canyon virus (11), St. Louis encephalitis virus (10), Powassan virus (8), and Eastern equine encephalitis virus (8). WNV and other arboviruses cause serious illness in substantial numbers of persons each year. Maintaining surveillance programs is important to help direct prevention activities.

p53-Mediated Cellular Response to DNA Damage in Cells with Replicative Hepatitis B Virus

NASA Astrophysics Data System (ADS)

Puisieux, Alain; Ji, Jingwei; Guillot, Celine; Legros, Yann; Soussi, Thierry; Isselbacher, Kurt; Ozturk, Mehmet

1995-02-01

Wild-type p53 acts as a tumor suppressor gene by protecting cells from deleterious effects of genotoxic agents through the induction of a G_1/S arrest or apoptosis as a response to DNA damage. Transforming proteins of several oncogenic DNA viruses inactivate tumor suppressor activity of p53 by blocking this cellular response. To test whether hepatitis B virus displays a similar effect, we studied the p53-mediated cellular response to DNA damage in 2215 hepatoma cells with replicative hepatitis B virus. We demonstrate that hepatitis B virus replication does not interfere with known cellular functions of p53 protein.

Evaluation of the attenuation, immunogenicity, and efficacy of a live virus vaccine generated by codon-pair bias de-optimization of the 2009 pandemic H1N1 influenza virus, in ferrets

PubMed Central

Broadbent, Andrew J.; Santos, Celia P.; Anafu, Amanda; Wimmer, Eckard; Mueller, Steffen; Subbarao, Kanta

2015-01-01

Codon-pair bias de-optimization (CPBD) of viruses involves re-writing viral genes using statistically underrepresented codon pairs, without any changes to the amino acid sequence or codon usage. Previously, this technology has been used to attenuate the influenza A/Puerto Rico/8/34 (H1N1) virus. The de-optimized virus was immunogenic and protected inbred mice from challenge. In order to assess whether CPBD could be used to produce a live vaccine against a clinically relevant influenza virus, we generated an influenza A/California/07/2009 pandemic H1N1 (2009 pH1N1) virus with de-optimized HA and NA gene segments (2009 pH1N1-(HA+NA)Min), and evaluated viral replication and protein expression in MDCK cells, and attenuation, immunogenicity, and efficacy in outbred ferrets. The 2009 pH1N1-(HA+NA)Min virus grew to a similar titer as the 2009 pH1N1 wild type (wt) virus in MDCK cells (~106 TCID50/ml), despite reduced HA and NA protein expression on western blot. In ferrets, intranasal inoculation of 2009 pH1N1-(HA+NA)Min virus at doses ranging from 103 to 105 TCID50 led to seroconversion in all animals and protection from challenge with the 2009 pH1N1 wt virus 28 days later. The 2009 pH1N1-(HA+NA)Min virus did not cause clinical illness in ferrets, but replicated to a similar titer as the wt virus in the upper and lower respiratory tract, suggesting that de-optimization of additional gene segments may be warranted for improved attenuation. Taken together, our data demonstrate the potential of using CPBD technology for the development of a live influenza virus vaccine if the level of attenuation is optimized. PMID:26655630

Crystallization and preliminary X-ray diffraction studies of Seneca Valley Virus-001, a new member of the Picornaviridae family

DOE Office of Scientific and Technical Information (OSTI.GOV)

Venkataraman, Sangita; Reddy, Seshidhar P.; Loo, Jackie

2008-04-01

Seneca Valley Virus-001 of the Picornavirdae family was crystallized in the space group R3 and X-ray diffraction data was collected to a resolution of 2.3 Å. Rotation-function studies suggested the presence of two distict sets of 20 protomers that belong to two different virus particles in the crystallographic asymmetric unit. Seneca Valley Virus-001 (SVV-001) is a newly found species in the Picornaviridae family. SVV-001 is the first naturally occurring nonpathogenic picorna@@virus observed to mediate selective cytotoxicity towards tumor cells with neuroendocrine cancer features. The nonsegmented (+)ssRNA genome of SVV-001 shares closest sequence similarity to the genomes of the members ofmore » the Cardiovirus genus. However, based on the distinct characteristics of the genome organization and other biochemical properties, it has been suggested that SVV-001 represents a new genus, namely ‘Senecavirus’, in the Picornaviridae family. In order to understand the oncolytic properties of SVV-001, the native virus was crystallized using the hanging-drop vapour-diffusion method. The crystals belonged to space group R3, with unit-cell parameters (in the hexagonal setting) a = b = 311.5, c = 1526.4 Å. Although the SVV crystals diffracted to better than 2.3 Å resolution, the data quality is acceptable [I/σ(I) > 2.0] to 2.6 Å resolution. The unit-cell volume and the locked rotation-function analysis suggest that six particles could be accommodated in the unit cell, with two distinct sets of one third of a particle, each containing 20 protomers, occupying the crystallographic asymmetric unit.« less

Genetic analysis of Israel Acute Paralysis Virus: distinct clusters are circulating into the United States.

USDA-ARS?s Scientific Manuscript database

Israel acute paralysis virus (IAPV) is associated with colony collapse disorder of honey bees. Nonetheless, its role in the pathogenesis of the disorder and its geographic distribution are unclear. Here, we report phylogenetic analysis of IAPV obtained from bees in the United States, Canada, Austral...

Status of vaccines for porcine epidemic diarrhea virus in the United States and Canada

USDA-ARS?s Scientific Manuscript database

In 2013, porcine epidemic diarrhea virus (PEDV) emerged in the United States as a rapidly spreading epidemic causing dramatic death losses in suckling piglets. Neonatal piglets are most vulnerable to clinical disease and their only protection is passive immunity from their dam. At the end of the thi...

Spatial and phylogenetic analysis of the vesicular stomatitis virus epidemic in the southwestern United States in 2004-2006

USDA-ARS?s Scientific Manuscript database

The southwestern United States has been incidentally affected by vesicular stomatitis virus (VSV) epidemics during the last 100 years. By the time this manuscript was written, the last episodes were reported in 2004-2006. Results of space clustering and phylogenetic analysis techniques used here sug...

Human and Porcine Hepatitis E Virus Strains, United Kingdom

PubMed Central

Bendall, Richard; Grierson, Sylvia; Heath, Graham; Mitchell, Jonathon; Dalton, Harry

2004-01-01

We describe a case of acquired infection of a strain of hepatitis E virus (HEV)with a 100% amino acid identity to the analogous region in strains of HEV circulating in a United Kingdom pig herd. This case further supports the theory that autochthonous HEV infection in industrialized countries is zoonotic. PMID:15200841

Introductions of West Nile Virus Strains to Mexico

PubMed Central

Deardorff, Eleanor; Estrada-Franco, José G.; Brault, Aaron C.; Navarro-Lopez, Roberto; Campomanes-Cortes, Arturo; Paz-Ramirez, Pedro; Solis-Hernandez, Mario; Ramey, Wanichaya N.; Davis, C. Todd; Beasley, David W.C.; Tesh, Robert B.; Barrett, Alan D.T.

2006-01-01

Complete genome sequencing of 22 West Nile virus isolates suggested 2 independent introductions into Mexico. A previously identified mouse-attenuated glycosylation variant was introduced into southern Mexico through the southeastern United States, while a common US genotype appears to have been introduced incrementally into northern Mexico through the southwestern United States. PMID:16494762

Media Messages and Perception of Risk for Ebola Virus Infection, United States.

PubMed

Sell, Tara Kirk; Boddie, Crystal; McGinty, Emma E; Pollack, Keshia; Smith, Katherine Clegg; Burke, Thomas A; Rutkow, Lainie

2017-01-01

News media have been blamed for sensationalizing Ebola in the United States, causing unnecessary alarm. To investigate this issue, we analyzed US-focused news stories about Ebola virus disease during July 1-November 30, 2014. We found frequent use of risk-elevating messages, which may have contributed to increased public concern.

Knowledge Gaps Impacting the Development of Bovine Viral Diarrhea Virus Control Programs in the United States

USDA-ARS?s Scientific Manuscript database

This paper identifies knowledge gaps that impact on the design of programs to control and or eradicate bovine viral diarrhea viruses (BVDV) in the United States. Currently there are several voluntary regional BVDV control programs in place. These control programs are aimed at the removal of animals ...

Masks for prevention of respiratory viruses on the BMT unit: results of a quality initiative.

PubMed

Sokol, Kelsey A; De la Vega-Diaz, Imelda; Edmondson-Martin, Kathleen; Kim, Sara; Tindle, Sharon; Wallach, Fran; Steinberg, Amir

2016-12-01

Respiratory viral infections (RVI) cause significant morbidity and mortality in hospitalized oncology patients. These viruses are easily spread from asymptomatic and/or symptomatic healthcare workers and visitors to immunocompromised patients, and literature review of facemasks for prevention of infection revealed mixed results. The Bone Marrow Transplant (BMT) Quality Assurance (QA) Committee at Mount Sinai began a surgical mask initiative on the BMT unit. The purpose of our initiative was to assess the impact of surgical mask implementation for healthcare workers and visitors on nosocomial RVI in all patients hospitalized on the BMT unit. We hypothesized that implementing surgical masks would reduce the number of hospital-acquired RVI. We performed a retrospective study involving all patients with malignancy hospitalized on the BMT unit for 4 years. During the latter 2 years, all healthcare workers and visitors were required to wear a surgical mask in every patient room on the BMT unit. Primary endpoint was incidence of RVI after implementation of surgical masks. The 2-year incidence of RVI in the pre-mask period was 14 out of a total of 15 001 patient days on the unit vs 2 out of 15 608 patient days after mask implementation. The difference in incidence of RVI within the two time intervals was noted to be statistically significant (P<.05, 2-proportion z-test). Our quality initiative demonstrated that surgical masks are an infection control modality that may provide benefit to oncology/BMT units by decreasing the risk for hospital-acquired RVI. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

An Ultraviolet Spectrograph Concept for Exploring Ocean Worlds

NASA Astrophysics Data System (ADS)

Schindhelm, E. R.; Hendrix, A. R.; Fleming, B. T.

2018-05-01

UV spectroscopy can probe dust/ice composition of the surface or plumes via uniquely identifying features. We present a technology concept for a future planetary science UV multi-object imaging spectrograph.

An age-related change in susceptibility of rat brain to encephalomyocarditis virus infection

PubMed Central

IKEGAMI, HISASHI; TAKEDA, MAKIO; DOI, KUNIO

1997-01-01

Rats were inoculated intraperitoneally (i.p.) or intracerebrally (i.c.) with 1 × 104 plaque forming units (PFU)/animal of the D variant of encephalomyocarditis virus (EMC-D) at 2, 4, 7, 14, 28 or 56 days of age for virological and histopathological examination. In the i.p.-inoculation study, neither viral replication nor lesions were detected in the animals inoculated at 28 and 56 days of age. In the animals inoculated when younger than 14 days of age, lesions were restricted to the brain although viral replication was detected in the brain, heart and pancreas. The brain lesions were characterized by acute meningoencephalitis with neuronal necrosis in the cerebral cortex, hippocampus and thalamus, and viral RNA was detected in degenerated and/or intact neurons. In the i.c.-inoculation study, similar age-related changes in susceptibility of rat brain to EMC-D infection were observed, but a minor difference was that viral replication and lesions were still detected in the hippocampus of some animals inoculated at 28 days of age. These results suggest that an age-related decrease in the susceptibility of rat brain to EMC virus infection may reflect an age-related change in the susceptibility of neurons themselves as well as in maturation of the immune system. PMID:9203984

An ELISA method to compute endpoint titers to Epstein-Barr virus and cytomegalovirus: application to population-based studies.

PubMed

Stowe, Raymond P; Ruiz, R Jeanne; Fagundes, Christopher P; Stowe, Robin H; Chen, Min; Glaser, Ronald

2014-06-01

Indirect fluorescence analysis (IFA), the gold standard for determining herpesvirus antibody titers, is labor-intensive and poorly suited for large population-based studies. The enzyme-linked immunosorbent assay (ELISA) is used widely for measuring antiviral antibodies but also suffers drawbacks such as reduced specificity and the qualitative nature of the results due to limited interpretation of the optical density (OD) units. This paper describes a method to titer herpesvirus antibodies using microplates coated with virally-infected cells in which a standard curve, derived from IFA-scored samples, allowed OD units to be converted into titers. A LOOKUP function was created in order to report the data as traditional IFA-based (i.e., 2-fold) titers. The modified ELISA correlated significantly with IFA and was subsequently used to compute endpoint antibody titers to Epstein-Barr virus (EBV)-virus capsid antigen (VCA) and cytomegalovirus (CMV) in blood samples taken from 398 pregnant Hispanic women. Four women were EBV negative (1%), while 58 women were CMV negative (14.6%). EBV VCA antibody titers were significantly higher than CMV antibody titers (p<0.001). This method allows titering of herpesvirus antibodies by ELISA suitable for large population-based studies. In addition, the LOOKUP table enables conversion from OD-derived titers into 2-fold titers for comparison of results with other studies. Copyright © 2014 Elsevier B.V. All rights reserved.

West Nile virus disease and other arboviral diseases--United States, 2010.

PubMed

2011-08-05

Arthropod-borne viruses (arboviruses) are transmitted to humans primarily through the bites of infected mosquitoes and ticks. Since West Nile virus (WNV) was first detected in the Western Hemisphere in 1999, it has become the leading cause of neuroinvasive arboviral disease in the United States. However, several other arboviruses continue to cause sporadic cases and seasonal outbreaks of neuroinvasive disease (i.e., meningitis, encephalitis, or acute flaccid paralysis). This report summarizes surveillance data reported to CDC in 2010 for WNV and other nationally notifiable arboviruses (excluding dengue, which is reported separately). In 2010, 40 states and the District of Columbia (DC) reported 1,021 cases of WNV disease. Of these, 629 (62%) were classified as WNV neuroinvasive disease, for a national incidence of 0.20 per 100,000 population. States with the highest incidence were Arizona (1.60), New Mexico (1.03), Nebraska (0.55), and Colorado (0.51). After WNV, the next most commonly reported cause of neuroinvasive arboviral disease was California serogroup viruses (CALV), with 68 cases, followed by eastern equine encephalitis virus (EEEV), 10 cases, St. Louis encephalitis virus (SLEV), eight cases, and Powassan virus (POWV), eight cases. WNV and other arboviruses continue to cause focal outbreaks and severe illness in substantial numbers of persons in the United States. Maintaining surveillance remains important to guide arboviral disease prevention activities.

Epidemiology, Virology, and Pathogenesis of the Zika Virus: From Neglected Tropical Disease to a Focal Point of International Attention.

PubMed

Schirmer, David A; Kawwass, Jennifer Fay

2016-09-01

Over the past year, the Zika virus, an arthropod-borne Flavivirus , has transitioned from a relatively unknown tropical disease to the cause of a public health emergency. The Zika virus is transmitted by the Aedes species of mosquito as well as by sexual intercourse. Although the symptoms of acute Zika virus infection are usually mild and self-limited, it causes fetal microcephaly in pregnant women, and is associated with an increased risk of Guillain-Barré syndrome. The risk of microcephaly from Zika virus infection is estimated to be highest in women who are infected during the first trimester of pregnancy. The Zika virus has been shown to have significant neurotrophism in vivo and in vitro , although further study is needed to characterize its mechanisms of pathogenesis. Zika virus has previously caused two known outbreaks in the Pacific region prior to the current epidemic in South and Central America, and the current epidemic has affected at least 440,000 to 1,300,000 people. The population of the vector for the current epidemic, Aedes aegypti , varies seasonally in the United States, however there have been few documented cases of local spread of the Zika infection in the United States and it is unclear whether epidemic spread of Zika will occur within the United States. Thieme Medical Publishers 333 Seventh Avenue, New York, NY 10001, USA.

Microbial removals by a novel biofilter water treatment system.

PubMed

Wendt, Christopher; Ives, Rebecca; Hoyt, Anne L; Conrad, Ken E; Longstaff, Stephanie; Kuennen, Roy W; Rose, Joan B

2015-04-01

Two point-of-use drinking water treatment systems designed using a carbon filter and foam material as a possible alternative to traditional biosand systems were evaluated for removal of bacteria, protozoa, and viruses. Two configurations were tested: the foam material was positioned vertically around the carbon filter in the sleeve unit or horizontally in the disk unit. The filtration systems were challenged with Cryptosporidium parvum, Raoultella terrigena, and bacteriophages P22 and MS2 before and after biofilm development to determine average log reduction (ALR) for each organism and the role of the biofilm. There was no significant difference in performance between the two designs, and both designs showed significant levels of removal (at least 4 log10 reduction in viruses, 6 log10 for protozoa, and 8 log10 for bacteria). Removal levels meet or exceeded Environmental Protection Agency (EPA) standards for microbial purifiers. Exploratory test results suggested that mature biofilm formation contributed 1-2 log10 reductions. Future work is recommended to determine field viability. © The American Society of Tropical Medicine and Hygiene.

Earth's Radiation Belts: The View from Juno's Cameras

NASA Astrophysics Data System (ADS)

Becker, H. N.; Joergensen, J. L.; Hansen, C. J.; Caplinger, M. A.; Ravine, M. A.; Gladstone, R.; Versteeg, M. H.; Mauk, B.; Paranicas, C.; Haggerty, D. K.; Thorne, R. M.; Connerney, J. E.; Kang, S. S.

2013-12-01

Juno's cameras, particle instruments, and ultraviolet imaging spectrograph have been heavily shielded for operation within Jupiter's high radiation environment. However, varying quantities of >1-MeV electrons and >10-MeV protons will be energetic enough to penetrate instrument shielding and be detected as transient background signatures by the instruments. The differing shielding profiles of Juno's instruments lead to differing spectral sensitivities to penetrating electrons and protons within these regimes. This presentation will discuss radiation data collected by Juno in the Earth's magnetosphere during Juno's October 9, 2013 Earth flyby (559 km altitude at closest approach). The focus will be data from Juno's Stellar Reference Unit, Advanced Stellar Compass star cameras, and JunoCam imager acquired during coordinated proton measurements within the inner zone and during the spacecraft's inbound and outbound passages through the outer zone (L ~3-5). The background radiation signatures from these cameras will be correlated with dark count background data collected at these geometries by Juno's Ultraviolet Spectrograph (UVS) and Jupiter Energetic Particle Detector Instrument (JEDI). Further comparison will be made to Van Allen Probe data to calibrate Juno's camera results and contribute an additional view of the Earth's radiation environment during this unique event.

Public water supplies of the 100 largest cities of the United States, 1962

USGS Publications Warehouse

Durfor, Charles N.; Becker, Edith

1964-01-01

The report is divided into two sections. The first describes the uses of water in large cities, the raw-water supplies available for public supplies, tl-<; major and minor constituents and the properties of water, the methods of analyses, the treatment of water, the effects of chemical treatment on constituents and properties of water, and the costs of water treatment. The second is a city-by-city inventory that gives (a) the population of the city, (b) the adjacent communities supplied by the city water system, (c) the total population served, (d) the sources of water supply (including auxiliary and emergency supplies), (e) the average amount of water used daily, (f) the lowest 30-day mean discharge of streams used for public supply during recent years, (g) the treatment of water, (h) the rated capacity of each water-treatment plant, and (i) the storage capacity for raw and finished water. For 58 of the cities, the sources of water, the location of water-treatment plants, and the areas served by the city system are shown on maps. Chemical, spectrographic, and radiochemical analyses of treated water and chemical and spectrographic analyses for many of the raw-water supplies are presented in tabular form.

Focal plane instrument for the Solar UV-Vis-IR Telescope aboard SOLAR-C

NASA Astrophysics Data System (ADS)

Katsukawa, Yukio; Suematsu, Yoshinori; Shimizu, Toshifumi; Ichimoto, Kiyoshi; Takeyama, Norihide

2011-10-01

It is presented the conceptual design of a focal plane instrument for the Solar UV-Vis-IR Telescope (SUVIT) aboard the next Japanese solar mission SOLAR-C. A primary purpose of the telescope is to achieve precise as well as high resolution spectroscopic and polarimetric measurements of the solar chromosphere with a big aperture of 1.5 m, which is expected to make a significant progress in understanding basic MHD processes in the solar atmosphere. The focal plane instrument consists of two packages: A filtergraph package is to get not only monochromatic images but also Dopplergrams and magnetograms using a tunable narrow-band filter and interference filters. A spectrograph package is to perform accurate spectro-polarimetric observations for measuring chromospheric magnetic fields, and is employing a Littrow-type spectrograph. The most challenging aspect in the instrument design is wide wavelength coverage from 280 nm to 1.1 μm to observe multiple chromospheric lines, which is to be realized with a lens unit including fluoride glasses. A high-speed camera for correlation tracking of granular motion is also implemented in one of the packages for an image stabilization system, which is essential to achieve high spatial resolution and high polarimetric accuracy.

SCALA: In situ calibration for integral field spectrographs

NASA Astrophysics Data System (ADS)

Lombardo, S.; Küsters, D.; Kowalski, M.; Aldering, G.; Antilogus, P.; Bailey, S.; Baltay, C.; Barbary, K.; Baugh, D.; Bongard, S.; Boone, K.; Buton, C.; Chen, J.; Chotard, N.; Copin, Y.; Dixon, S.; Fagrelius, P.; Feindt, U.; Fouchez, D.; Gangler, E.; Hayden, B.; Hillebrandt, W.; Hoffmann, A.; Kim, A. G.; Leget, P.-F.; McKay, L.; Nordin, J.; Pain, R.; Pécontal, E.; Pereira, R.; Perlmutter, S.; Rabinowitz, D.; Reif, K.; Rigault, M.; Rubin, D.; Runge, K.; Saunders, C.; Smadja, G.; Suzuki, N.; Taubenberger, S.; Tao, C.; Thomas, R. C.; Nearby Supernova Factory

2017-11-01

Aims: The scientific yield of current and future optical surveys is increasingly limited by systematic uncertainties in the flux calibration. This is the case for type Ia supernova (SN Ia) cosmology programs, where an improved calibration directly translates into improved cosmological constraints. Current methodology rests on models of stars. Here we aim to obtain flux calibration that is traceable to state-of-the-art detector-based calibration. Methods: We present the SNIFS Calibration Apparatus (SCALA), a color (relative) flux calibration system developed for the SuperNova integral field spectrograph (SNIFS), operating at the University of Hawaii 2.2 m (UH 88) telescope. Results: By comparing the color trend of the illumination generated by SCALA during two commissioning runs, and to previous laboratory measurements, we show that we can determine the light emitted by SCALA with a long-term repeatability better than 1%. We describe the calibration procedure necessary to control for system aging. We present measurements of the SNIFS throughput as estimated by SCALA observations. Conclusions: The SCALA calibration unit is now fully deployed at the UH 88 telescope, and with it color-calibration between 4000 Å and 9000 Å is stable at the percent level over a one-year baseline.

Spatial distribution of dust in galaxies from the Integral field unit data

NASA Astrophysics Data System (ADS)

Zafar, Tayyaba; Sophie Dubber, Andrew Hopkins

2018-01-01

An important characteristic of the dust is it can be used as a tracer of stars (and gas) and tell us about the composition of galaxies. Sub-mm and infrared studies can accurately determine the total dust mass and its spatial distribution in massive, bright galaxies. However, faint and distant galaxies are hampered by resolution to dust spatial dust distribution. In the era of integral-field spectrographs (IFS), Balmer decrement is a useful quantity to infer the spatial extent of the dust in distant and low-mass galaxies. We conducted a study to estimate the spatial distribution of dust using the Sydney-Australian Astronomical Observatory (AAO) Multi-object Integral field spectrograph (SAMI) galaxies. Our methodology is unique to exploit the potential of IFS and using the spatial and spectral information together to study dust in galaxies of various morphological types. The spatial extent and content of dust are compared with the star-formation rate, reddening, and inclination of galaxies. We find a right correlation of dust spatial extent with the star-formation rate. The results also indicate a decrease in dust extent radius from Late Spirals to Early Spirals.

Fingerprints in the Light

NASA Technical Reports Server (NTRS)

2005-01-01

[figure removed for brevity, see original site] Figure 1

This graph, or spectrum, shows the light from a dusty, distant galaxy located 11 billion light-years away. The galaxy is invisible to optical telescopes, but NASA's Spitzer Space Telescope was able to capture the light from it and dozens of other similar galaxies using heat-seeking infrared eyes.

Spectra are created when an instrument called a spectrograph spreads light out into its basic parts, like a prism turning sunlight into a rainbow. They contain the signatures, or 'fingerprints,' of molecules that contribute to an object's light.

In this case, the galaxy's spectrum reveals the fingerprint for silicate dust (large dip at right), a planetary building block like sand, only smaller. This particular fingerprint is important because it helped astronomers determine how far away the galaxy lies, or more specifically, how much the galaxy's light had stretched, or 'redshifted,' during its journey to Spitzer's eyes. Because the universe is expanding, a galaxy's light will shift toward reddish wavelengths as it moves away from us. This galaxy was found to have a redshift of 1.95, which means that its light took about 11 billion years to get here.

The presence of the silicate fingerprint is also significant because it implies that galaxies were ripe for planetary formation 11 billion years ago - back to a time when the universe was 3 billion years old. The universe is currently believed to be 13.5 billion years old. This is the furthest back in time that silicate dust has been detected around a galaxy.

These data were taken by Spitzer's infrared spectrograph in July, 2004.

Study of 162Er via the (p , t) and (p ,p') reactions

NASA Astrophysics Data System (ADS)

Kisliuk, D.; Garrett, P. E.; Finlay, A.; Bianco, L.; Bildstein, V.; Burbadge, C.; Chagnon-Lessard, S.; Diaz Varela, A.; Dunlop, M. R.; Dunlop, R.; Finlay, P.; Jamieson, D.; Jigmeddorj, B.; Maclean, A. D.; Michetti-Wilson, J.; Leach, K. G.; Radich, A. J.; Rand, E.; Svensson, C. E.; Wong, J.; Ball, G. C.; Triambak, S.; Faestermann, T.; Hertenberger, R.; Wirth, H.-F.

2015-10-01

The nature of excited states in well-deformed nuclei pose a challenge in nuclear structure. In light of this, the study of 162Er via the 164Er (p , t) and 162Er (p ,p') reactions has been initiated to shed light on the structure of these excited states. The experiments were performed at the Maier-Leibnitz Laboratory using a 22 MeV proton beam on highly-enriched targets of 162,164Er and the reaction was analyzed with the Q3D spectrograph. Strong population in the (p , t) reaction of the 02+ state, far greater than other 0+ states, has been observed. Transition matrix elements for population of low-lying states in the (p ,p') reaction have also been extracted. Initial results from these experiments will be presented.

Small Astronomy Payloads for Spacelab. [conferences

NASA Technical Reports Server (NTRS)

Bohlin, R. C. (Editor)

1975-01-01

The workshop to define feasible concepts in the UV-optical 1R area for Astronomy Spacelab Payloads is reported. Payloads proposed include: high resolution spectrograph, Schmidt camera spectrograph, UV telescope, and small infrared cryogenic telescope.

The optical design of the G-CLEF Spectrograph: the first light instrument for the GMT

NASA Astrophysics Data System (ADS)

Ben-Ami, Sagi; Epps, Harland; Evans, Ian; Mueller, Mark; Podgorski, William; Szentgyorgyi, Andrew

2016-08-01

The GMT-Consortium Large Earth Finder (G-CLEF), the first major light instrument for the GMT, is a fiber-fed, high-resolution echelle spectrograph. In the following paper, we present the optical design of G-CLEF. We emphasize the unique solutions derived for the spectrograph fiber-feed: the Mangin mirror that corrects the cylindrical field curvature, the implementation of VPH grisms as cross dispersers, and our novel solution for a multi-colored exposure meter. We describe the spectrograph blue and red cameras comprised of 7 and 8 elements respectively, with one aspheric surface in each camera, and present the expected echellogram imaged on the instrument focal planes. Finally, we present ghost analysis and mitigation strategy that takes into account both single reflection and double reflection back scattering from various elements in the optical train.

PRISM Spectrograph Optical Design

NASA Technical Reports Server (NTRS)

Chipman, Russell A.

1995-01-01

The objective of this contract is to explore optical design concepts for the PRISM spectrograph and produce a preliminary optical design. An exciting optical configuration has been developed which will allow both wavelength bands to be imaged onto the same detector array. At present the optical design is only partially complete because PRISM will require a fairly elaborate optical system to meet its specification for throughput (area*solid angle). The most complex part of the design, the spectrograph camera, is complete, providing proof of principle that a feasible design is attainable. This camera requires 3 aspheric mirrors to fit inside the 20x60 cm cross-section package. A complete design with reduced throughput (1/9th) has been prepared. The design documents the optical configuration concept. A suitable dispersing prism material, CdTe, has been identified for the prism spectrograph, after a comparison of many materials.

Optical design of a versatile FIRST high-resolution near-IR spectrograph

NASA Astrophysics Data System (ADS)

Zhao, Bo; Ge, Jian

2012-09-01

We report the update optical design of a versatile FIRST high resolution near IR spectrograph, which is called Florida IR Silicon immersion grating spectromeTer (FIRST). This spectrograph uses cross-dispersed echelle design with white pupils and also takes advantage of the image slicing to increase the spectra resolution, while maintaining the instrument throughput. It is an extremely high dispersion R1.4 (blazed angle of 54.74°) silicon immersion grating with a 49 mm diameter pupil is used as the main disperser at 1.4μm -1.8μm to produce R=72,000 while an R4 echelle with the same pupil diameter produces R=60,000 at 0.8μm -1.35μm. Two cryogenic Volume Phase Holographic (VPH) gratings are used as cross-dispersers to allow simultaneous wavelength coverage of 0.8μm -1.8μm. The butterfly mirrors and dichroic beamsplitters make a compact folding system to record these two wavelength bands with a 2kx2k H2RG array in a single exposure. By inserting a mirror before the grating disperser (the SIG and the echelle), this spectrograph becomes a very efficient integral field 3-D imaging spectrograph with R=2,000-4,000 at 0.8μm-1.8μm by coupling a 10x10 telescope fiber bundle with the spectrograph. Details about the optical design and performance are reported.

Time-of-flight mass spectrographs—From ions to neutral atoms

NASA Astrophysics Data System (ADS)

Möbius, E.; Galvin, A. B.; Kistler, L. M.; Kucharek, H.; Popecki, M. A.

2016-12-01

After their introduction to space physics in the mid 1980s time-of-flight (TOF) spectrographs have become a main staple in spaceborne mass spectrometry. They have largely replaced magnetic spectrometers, except when extremely high mass resolution is required to identify complex molecules, for example, in the vicinity of comets or in planetary atmospheres. In combination with electrostatic analyzers and often solid state detectors, TOF spectrographs have become key instruments to diagnose space plasma velocity distributions, mass, and ionic charge composition. With a variety of implementation schemes that also include isochronous electric field configurations, TOF spectrographs can respond to diverse science requirements. This includes a wide range in mass resolution to allow the separation of medium heavy isotopes or to simply provide distributions of the major species, such as H, He, and O, to obtain information on source tracers or mass fluxes. With a top-hat analyzer at the front end, or in combination with deflectors for three-axis stabilized spacecraft, the distribution function of ions can be obtained with good time resolution. Most recently, the reach of TOF ion mass spectrographs has been extended to include energetic neutral atoms. After selecting the arrival direction with mechanical collimation, followed by conversion to ions, adapted TOF sensors form a new branch of the spectrograph family tree. We review the requirements, challenges, and implementation schemes for ion and neutral atom spectrographs, including potential directions for the future, while largely avoiding overlap with complementary contributions in this special issue.

A Cross-Dispersed Medium-Resolution Spectrograph for Appalachian State Univeristy's 32-inch Telescope

NASA Astrophysics Data System (ADS)

Kluttz, K. A.; Gray, R. O.

2003-12-01

We have designed and constructed an economical medium-resolution spectrograph to be used on the 32-inch telescope of Appalachian State University's Dark Sky Observatory (DSO). The primary function of this instrument will be to study shell and emission-line stars. However, we will also use this instrument for chemical abundance studies and radial velocities. The basic design is that of an Ebert spectrograph with a single 6-inch mirror acting as both the collimator and camera. The primary dispersion is accomplished by a reflection grating, and order separation is accomplished by a grism. The spectrograph has been designed so that three wavelength regions are simultaneously imaged on the CCD camera. When the Hα line is centered in the third order, Hβ and lines of Fe II multiplet 42 -- often enhanced in shell and emission-line stars -- appear in the fourth order and the fifth order contains both the Ca II K & H lines. To facilitate abundance measurements, a telluric-free region near 6400Å is available in the third order by tilting the main diffraction grating. Preliminary tests have shown that the resolution of the new spectrograph is 0.42Å in the third order (R ≈ 15,000). This relatively high resolution will allow studies to be conducted at DSO which have not previously been possible with the instrumentation currently in use. Several optical components for this spectrograph were purchased with grants from the Fund for Astrophysical Research and the University Research Council.

Suppression of fiber modal noise induced radial velocity errors for bright emission-line calibration sources

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mahadevan, Suvrath; Halverson, Samuel; Ramsey, Lawrence

2014-05-01

Modal noise in optical fibers imposes limits on the signal-to-noise ratio (S/N) and velocity precision achievable with the next generation of astronomical spectrographs. This is an increasingly pressing problem for precision radial velocity spectrographs in the near-infrared (NIR) and optical that require both high stability of the observed line profiles and high S/N. Many of these spectrographs plan to use highly coherent emission-line calibration sources like laser frequency combs and Fabry-Perot etalons to achieve precision sufficient to detect terrestrial-mass planets. These high-precision calibration sources often use single-mode fibers or highly coherent sources. Coupling light from single-mode fibers to multi-mode fibersmore » leads to only a very low number of modes being excited, thereby exacerbating the modal noise measured by the spectrograph. We present a commercial off-the-shelf solution that significantly mitigates modal noise at all optical and NIR wavelengths, and which can be applied to spectrograph calibration systems. Our solution uses an integrating sphere in conjunction with a diffuser that is moved rapidly using electrostrictive polymers, and is generally superior to most tested forms of mechanical fiber agitation. We demonstrate a high level of modal noise reduction with a narrow bandwidth 1550 nm laser. Our relatively inexpensive solution immediately enables spectrographs to take advantage of the innate precision of bright state-of-the art calibration sources by removing a major source of systematic noise.« less

Investigation of airborne foot-and-mouth disease virus transmission during low-wind conditions in the early phase of the UK 2001 epidemic

NASA Astrophysics Data System (ADS)

Mikkelsen, T.; Alexandersen, S.; Astrup, P.; Champion, H. J.; Donaldson, A. I.; Dunkerley, F. N.; Gloster, J.; Sørensen, J. H.; Thykier-Nielsen, S.

2003-11-01

Foot-and-mouth disease (FMD) is a highly contagious viral disease of cloven-hoofed domesticated and wild animals. The highly contagious nature of FMD is a reflection of the wide range of host species, the enormous quantities of virus liberated by infected animals, the range of excretions and secretions which can be infectious, the stability of the virus in the environment, the multiplicity of routes of infection and the very small doses of the virus that can initiate infection. One of the mechanisms of spread is the carriage of droplets and droplet nuclei exhaled in the breath of infected animals. Such spread can be rapid and extensive, and it is known in certain circumstances to have transmitted disease over a distance of several hundred kilometres. During the 2001 FMD epidemic in the United Kingdom (UK), atmospheric dispersion models were applied in real time in order to assess the potential for atmospheric dispersion of the disease. The operational value of such modelling is primarily to identify premises which may have been exposed so that the human resources for surveillance and disease control purposes are employed most effectively.

The paper describes the combined modelling techniques and presents the results obtained of detailed analyses performed during the early stages of the UK 2001 epidemic. This paper investigates the potential for disease spread in relation to two outbreaks (Burnside Farm, Heddon-on-the-Wall and Prestwick Hall Farm, Ponteland, Northumberland). A separate paper (Gloster et al., 2002) provides a more detailed analysis of the airborne disease transmission in the vicinity of Burnside Farm.

The combined results are consistent with airborne transmission of disease to livestock in the Heddon-on-the-Wall area. Local topography may have played a significant role in influencing the pattern of disease spread.

Purification, crystallization and preliminary X-ray analysis of the IgV domain of human nectin-4.

PubMed

Xu, Xiang; Zhang, Xiaoai; Lu, Guangwen; Cai, Yongping

2012-08-01

Nectin-4 belongs to a family of immunoglobulin-like cell adhesion molecules and is highly expressed in cancer cells. Recently, nectin-4 was found to be a receptor of measles virus and the IgV domain sustains strong binding to measles virus H protein. In this study, the successful expression and purification of human nectin-4 V domain (nectin-4v) is reported. The purified protein was crystallized using the sitting-drop vapour-diffusion method. The crystals diffracted to 1.8 Å resolution and belonged to space group P2(1), with unit-cell parameters a = 33.1, b = 51.7, c = 56.9 Å, β = 94.7°. Preliminary analysis of the diffraction data was also performed.

Purification, crystallization and preliminary X-ray analysis of the IgV domain of human nectin-4

PubMed Central

Xu, Xiang; Zhang, Xiaoai; Lu, Guangwen; Cai, Yongping

2012-01-01

Nectin-4 belongs to a family of immunoglobulin-like cell adhesion molecules and is highly expressed in cancer cells. Recently, nectin-4 was found to be a receptor of measles virus and the IgV domain sustains strong binding to measles virus H protein. In this study, the successful expression and purification of human nectin-4 V domain (nectin-4v) is reported. The purified protein was crystallized using the sitting-drop vapour-diffusion method. The crystals diffracted to 1.8 Å resolution and belonged to space group P21, with unit-cell parameters a = 33.1, b = 51.7, c = 56.9 Å, β = 94.7°. Preliminary analysis of the diffraction data was also performed. PMID:22869128

C-Terminal HIV-1 Transframe p6* Tetrapeptide Blocks Enhanced Gag Cleavage Incurred by Leucine Zipper Replacement of a Deleted p6* Domain.

PubMed

Yu, Fu-Hsien; Huang, Kuo-Jung; Wang, Chin-Tien

2017-05-15

HIV-1 protease (PR) functions as a homodimer mediating virus maturation following virus budding. Gag-Pol dimerization is believed to trigger embedded PR activation by promoting PR dimer formation. Early PR activation can lead to markedly reduced virus yields due to premature Gag cleavage. The p6* peptide, located between Gag and PR, is believed to ensure virus production by preventing early PR maturation. Studies aimed at finding supporting evidence for this proposal are limited due to a reading frame overlap between p6* and the p6gag budding domain. To determine if p6* affects virus production via the modulation of PR activation, we engineered multiple constructs derived from Dp6*PR (an assembly- and processing-competent construct with Pol fused at the inactivated PR C terminus). The data indicated that a p6* deletion adjacent to active PR significantly impaired virus processing. We also observed that the insertion of a leucine zipper (LZ) dimerization motif in the deleted region eliminated virus production in a PR activity-dependent manner, suggesting that the LZ insertion triggered premature PR activation by facilitating PR dimer formation. As few as four C-terminal p6* residues remaining at the p6*/PR junction were sufficient to restore virus yields, with a Gag processing profile similar to that of the wild type. Our study provides supporting evidence in a virus assembly context that the C-terminal p6* tetrapeptide plays a role in preventing premature PR maturation. IMPORTANCE Supporting evidence for the assumption that p6* retards PR maturation in the context of virus assembly is lacking. We found that replacing p6* with a leucine zipper peptide abolished virus assembly due to the significant enhancement of Gag cleavage. However, as few as four C-terminal p6* residues remaining in the deleted region were sufficient for significant PR release, as well as for counteracting leucine zipper-incurred premature Gag cleavage. Our data provide evidence that (i) p6* ensures virus assembly by preventing early PR activation and (ii) four C-terminal p6* residues are critical for modulating PR activation. Current PR inhibitor development efforts are aimed largely at mature PR, but there is a tendency for HIV-1 variants that are resistant to multiple protease inhibitors to emerge. Our data support the idea of modulating PR activation by targeting PR precursors as an alternative approach to controlling HIV-1/AIDS. Copyright © 2017 American Society for Microbiology.

Highly pathogenic avian influenza viruses and generation of novel reassortants,United States, 2014–2015

USGS Publications Warehouse

Dong-Hun Lee,; Justin Bahl,; Mia Kim Torchetti,; Mary Lea Killian,; Ip, Hon S.; David E Swayne,

2016-01-01

Asian highly pathogenic avian influenza A(H5N8) viruses spread into North America in 2014 during autumn bird migration. Complete genome sequencing and phylogenetic analysis of 32 H5 viruses identified novel H5N1, H5N2, and H5N8 viruses that emerged in late 2014 through reassortment with North American low-pathogenicity avian influenza viruses.

Paramyxovirus Infection: Mortality and Morbidity in a Pediatric Intensive Care Unit.

PubMed

Tong, Alice S W; Hon, Kam Lun; Tsang, Yin Ching K; Chan, Renee Wan Yi; Chan, Ching Ching; Leung, Ting Fan; Chan, Paul K S

2016-10-01

We investigated mortality and morbidity of patients admitted to a pediatric intensive care unit (PICU) with paramyxovirus infection. A retrospective study between October 2002 and March 2015 of children with a laboratory-confirmed paramyxovirus infection was included. In all, 98 (5%) PICU admissions were tested positive to have paramyxovirus infection (respiratory syncytial virus =  66, parainfluenza  =  27 and metapneumovirus  =  5). The majority of admissions were young patients (median age 1.05 years). Bacteremia and bacterial isolation in any site were present in 10% and 28%, respectively; 41% were mechanically ventilated, and 20% received inotropes. The three respiratory viruses caused similar mortality and morbidity in the PICU. Fatality (seven patients) was associated with malignancy, positive bacterial culture in blood, the use of mechanical ventilation, inotrope use, lower blood white cell count and higher C reactive protein (p  =  0.02-0.0005). Backward binary logistic regression for these variables showed bacteremia (odds ratio [OR]: 31.7; 95% CI: 2.3-427.8; p  =  0.009), malignancy (OR: 45.5; 95% CI: 1.4-1467.7; p  =  0.031) and use of inotropes (OR: 15.0; 95% CI: 1.1-196.1; p  =  0.039) were independently associated with non-survival. March and July appeared to be the two peak months for PICU hospitalizations with paramyxovirus infection. Infections with paramyxoviruses account for 5% of PICU admissions and significant morbidity. Patient with premorbid history of malignancy and co-morbidity of bacteremia are associated with non-survival. March and July appeared to be the two peak months for PICU admissions with paramyxoviruses. © The Author [2016]. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Uveitis and Systemic Inflammatory Markers in Convalescent Phase of Ebola Virus Disease.

PubMed

Chancellor, John R; Padmanabhan, Sriranjani P; Greenough, Thomas C; Sacra, Richard; Ellison, Richard T; Madoff, Lawrence C; Droms, Rebecca J; Hinkle, David M; Asdourian, George K; Finberg, Robert W; Stroher, Ute; Uyeki, Timothy M; Cerón, Olga M

2016-02-01

We report a case of probable Zaire Ebola virus-related ophthalmologic complications in a physician from the United States who contracted Ebola virus disease in Liberia. Uveitis, immune activation, and nonspecific increase in antibody titers developed during convalescence. This case highlights immune phenomena that could complicate management of Ebola virus disease-related uveitis during convalescence.

Molecular Recognition Directed Self-Assembly of Supramolecular Architectures

DTIC Science & Technology

1994-06-30

TMV-Like SupraxlecuiarArchiteturc _ TMV is a simple virus consisting only of a single type of protein molecule and of a strand of ribonucleic acid (RNA...experiments have demonstrated that various substituted gallic acid derivatives can be used to construct exo-receptors with a tapered shape. 1.2...with 3,4,5-tris(p - dodecyloxybenzyloxy)benzoic acid {12-ABCr) resulted in the taper shaped structural units. 12- ABG-B1SC5 and 12-ABG-15C5

Update: Influenza Activity - United States, October 1, 2017-February 3, 2018.

PubMed

Budd, Alicia P; Wentworth, David E; Blanton, Lenee; Elal, Anwar Isa Abd; Alabi, Noreen; Barnes, John; Brammer, Lynnette; Burns, Erin; Cummings, Charisse N; Davis, Todd; Flannery, Brendan; Fry, Alicia M; Garg, Shikha; Garten, Rebecca; Gubareva, Larisa; Jang, Yunho; Kniss, Krista; Kramer, Natalie; Lindstrom, Stephen; Mustaquim, Desiree; O'Halloran, Alissa; Olsen, Sonja J; Sessions, Wendy; Taylor, Calli; Xu, Xiyan; Dugan, Vivien G; Katz, Jacqueline; Jernigan, Daniel

2018-02-16

Influenza activity in the United States began to increase in early November 2017 and rose sharply from December through February 3, 2018; elevated influenza activity is expected to continue for several more weeks. Influenza A viruses have been most commonly identified, with influenza A(H3N2) viruses predominating, but influenza A(H1N1)pdm09 and influenza B viruses were also reported. This report summarizes U.S. influenza activity* during October 1, 2017-February 3, 2018, † and updates the previous summary (1).

Etiology of respiratory disease in non-vaccinated, non-medicated calves in rearing herds.

PubMed

Autio, T; Pohjanvirta, T; Holopainen, R; Rikula, U; Pentikäinen, J; Huovilainen, A; Rusanen, H; Soveri, T; Sihvonen, L; Pelkonen, S

2007-01-31

The aim of this study was to examine the occurrence of bacterial, mycoplasmal and viral pathogens in the lower respiratory tract of calves in all-in all-out calf-rearing units. According to clinical status, non-medicated calves with and without respiratory disease signs were selected of the 40 herds investigated to analyse the micro-organisms present in healthy and diseased calves. Tracheobronchial lavage (TBL) and paired serum samples were analysed for bacteria, mycoplasmas, respiratory syncytial virus (RSV), parainfluenza virus 3 (PIV3), bovine corona virus (BCV) and bovine adenovirus (BAV). Pasteurella multocida was the most common bacterial pathogen. It was isolated from 34% of the TBL samples in 28 herds and was associated with clinical respiratory disease (p < 0.05) when other pathogenic bacteria or mycoplasma were present in the sample. Mannheimia spp. and Histophilus somni were rarely found. Mycoplasma bovis was not detected at all. Ureaplasma diversum was associated with clinical respiratory disease (p < 0.05). TBL samples from healthy or suspect calves were more often negative in bacterial culture than samples from diseased calves (p < 0.05). No viral infections were detected in six herds, while 16-21 herds had RSV, BCV, BAV or PIV3. In the herds that had calves seroconverted to BCV, respiratory shedding of BCV was more frequently observed than faecal shedding. This study showed that the microbial combinations behind BRD were diverse between herds. M. bovis, an emerging pathogen in many countries, was not detected.

Enhanced Exoplanet Biosignature from an Interferometer Addition to Low Resolution Spectrographs

NASA Astrophysics Data System (ADS)

Erskine, D. J.; Muirhead, P. S.; Vanderburg, A. M.; Szentgyorgyi, A.

2017-12-01

The absorption spectral signature of many atmospheric molecules consists of a group of 40 or so lines that are approximately periodic due to the physics of molecular vibration. This is fortuitous for detecting atmospheric features in an exoEarth, since it has a similar periodic nature as an interferometer's transmission, which is sinusoidal. The period (in wavenumbers) of the interferometer is selectable, being inversely proportional to the delay (in cm). We show that the addition of a small interferometer of 0.6 cm delay to an existing dispersive spectrograph can greatly enhance the detection of molecular features, by several orders of magnitude for initially low resolution spectrographs. We simulate the Gemini Planet Imager measuring a telluric spectrum having native resolution of 40 and 70 in the 1.65 micron and 2 micron bands. These low resolutions are insufficient to resolve the fine features of the molecular feature group. However, the addition of a 0.6 cm delay outside the spectrograph and in series with it increases the local amplitude of the signal to a level similar to a R=4400 (at 1.65 micron) or R=3900 (at 2 micron) classical spectrograph. Prepared by LLNL under Contract DE-AC52-07NA27344.

Hectospec, the MMT's 300 Optical Fiber-Fed Spectrograph

NASA Astrophysics Data System (ADS)

Fabricant, Daniel; Fata, Robert; Roll, John; Hertz, Edward; Caldwell, Nelson; Gauron, Thomas; Geary, John; McLeod, Brian; Szentgyorgyi, Andrew; Zajac, Joseph; Kurtz, Michael; Barberis, Jack; Bergner, Henry; Brown, Warren; Conroy, Maureen; Eng, Roger; Geller, Margaret; Goddard, Richard; Honsa, Michael; Mueller, Mark; Mink, Douglas; Ordway, Mark; Tokarz, Susan; Woods, Deborah; Wyatt, William; Epps, Harland; Dell'Antonio, Ian

2005-12-01

The Hectospec is a 300 optical fiber fed spectrograph commissioned at the MMT in the spring of 2004. In the configuration pioneered by the Autofib instrument at the Anglo-Australian Telescope, Hectospec's fiber probes are arranged in a radial ``fisherman on the pond'' geometry and held in position with small magnets. A pair of high-speed, six-axis robots move the 300 fiber buttons between observing configurations within ~300 s, and to an accuracy of ~25 μm. The optical fibers run for 26 m between the MMT's focal surface and the bench spectrograph, operating at R~1000-2000. Hectochelle, another high-dispersion bench spectrograph offering R~35,000, is also available. The system throughput, including all losses in the telescope optics, fibers, and spectrograph, peaks at ~10% at the grating blaze in 1" FWHM seeing. Correcting for aperture losses at the 1.5" diameter fiber entrance aperture, the system throughput peaks at ~17%, close to our prediction of 20%. Hectospec has proven to be a workhorse instrument at the MMT. Together, Hectospec and Hectochelle have been scheduled for 1/3 of the available nights since its commissioning. Hectospec has returned approximately 60,000 reduced spectra for 16 scientific programs during its first year of operation.

Toroidal varied-line space (TVLS) gratings

NASA Astrophysics Data System (ADS)

Thomas, Roger J.

2003-02-01

It is a particular challenge to develop a stigmatic spectrograph for EUV wavelengths since the very low normal-incidence reflectance of standard materials most often requires that the design be restricted to a single optical element which must simultaneously provide both re-imaging and spectral dispersion. This problem has been solved in the past by the use of toroidal gratings with uniform line-space rulings (TULS). A number of solar EUV spectrographs have been based on such designs, including SOHO/CDS, Solar-B/EIS, and the sounding rockets SERTS and EUNIS. More recently, Kita, Harada, and collaborators have developed the theory of spherical gratings with varied line-space rulings (SVLS) operated at unity magnification, which have been flown on several astronomical satellite missions. These ideas are now combined into a spectrograph concept that considers varied-line space grooves ruled onto toroidal gratings. Such TVLS designs are found to provide excellent imaging even at very large spectrograph magnifications and beam-speeds, permitting extremely high-quality performance in remarkably compact instrument packages. Optical characteristics of two solar spectrographs based on this concept are described: SUMI, proposed as a sounding rocket experiment, and NEXUS, proposed for the Solar Dynamics Observatory mission.

Antibody Pressure by a Human Monoclonal Antibody Targeting the 2009 Pandemic H1N1 Virus Hemagglutinin Drives the Emergence of a Virus with Increased Virulence in Mice

PubMed Central

O’Donnell, Christopher D.; Vogel, Leatrice; Wright, Amber; Das, Suman R.; Wrammert, Jens; Li, Gui-Mei; McCausland, Megan; Zheng, Nai-Ying; Yewdell, Jonathan W.; Ahmed, Rafi; Wilson, Patrick C.; Subbarao, Kanta

2012-01-01

ABSTRACT In 2009, a novel H1N1 influenza A virus (2009 pH1N1) emerged and caused a pandemic. A human monoclonal antibody (hMAb; EM4C04), highly specific for the 2009 pH1N1 virus hemagglutinin (HA), was isolated from a severely ill 2009 pH1N1 virus-infected patient. We postulated that under immune pressure with EM4C04, the 2009 pH1N1 virus would undergo antigenic drift and mutate at sites that would identify the antibody binding site. To do so, we infected MDCK cells in the presence of EM4C04 and generated 11 escape mutants, displaying 7 distinct amino acid substitutions in the HA. Six substitutions greatly reduced MAb binding (K123N, D131E, K133T, G134S, K157N, and G158E). Residues 131, 133, and 134 are contiguous with residues 157 and 158 in the globular domain structure and contribute to a novel pH1N1 antibody epitope. One mutation near the receptor binding site, S186P, increased the binding affinity of the HA to the receptor. 186P and 131E are present in the highly virulent 1918 virus HA and were recently identified as virulence determinants in a mouse-passaged pH1N1 virus. We found that pH1N1 escape variants expressing these substitutions enhanced replication and lethality in mice compared to wild-type 2009 pH1N1 virus. The increased virulence of these viruses was associated with an increased affinity for α2,3 sialic acid receptors. Our study demonstrates that antibody pressure by an hMAb targeting a novel epitope in the Sa region of 2009 pH1N1 HA is able to inadvertently drive the development of a more virulent virus with altered receptor binding properties. This broadens our understanding of antigenic drift. PMID:22647789

GMTIFS: challenging optical design problems and their solutions for the GMT integral-field spectrograph

NASA Astrophysics Data System (ADS)

Hart, John; Bloxham, Gabe; Boz, Robert; Espeland, Brady; Sharp, Robert

2016-08-01

GMTIFS is a first generation instrument for the Giant Magellan Telescope (GMT). It is a combined Imager and Integral Field Spectrograph (IFS) designed to work with the Adaptive Optics (AO) Systems of the GMT. Working at the diffraction limit of the GMT and satisfying the challenging AO interface requirements and constraints results in unique optical challenges. We describe two of these challenges and how we have addressed them. The GMT has a direct feed architecture that maximizes transmission and reduces emissivity. This means that the cryostat window is tilted to reflect visual wavelengths to the external Visual Wave Front Subsystem (VWS). For a plane-parallel window, this tilt causes astigmatism in the transmitted beam that must be corrected. A corrective system using two plates, tilted and slightly wedged in opposite directions, is used. Geometry and performance of the system is described. Another challenging problem is the optical design of the anamorphic field projector. The Integral Field Unit of GMTIFS requires that a small field delivered to it be projected onto an Image Slicer at much larger scale, with the magnification in the spectral direction being twice that in the spatial direction so that the spaxels are square when referred to the sky. Output images must be coincident in the spectral and spatial projections in both the field and pupil domains. Additionally, field and pupil image locations must be independently controllable so that they can be made coincident for interchangeable units that provide a range of output field scales. A two-mirror system that satisfies these requirements is described.

VizieR Online Data Catalog: Spectroscopy of EG And over roughly 14 years (Kenyon+, 2016)

NASA Astrophysics Data System (ADS)

Kenyon, S. J.; Garcia, M. R.

2016-08-01

From 1994 September to 2016 January, P. Berlind, M. Calkins, and other observers acquired 480 low-resolution optical spectra of EG And with FAST, a high throughput, slit spectrograph mounted at the Fred L. Whipple Observatory 1.5m telescope on Mount Hopkins, Arizona They used a 300g/mm grating blazed at 4750Å, a 3'' slit, and a thinned 512*2688 CCD. These spectra cover 3800-7500Å at a resolution of 6Å. The full wavelength solution is derived from calibration lamps acquired immediately after each exposure. The wavelength solution for each frame has a probable error of <~+/-0.5Å. Most of the resulting spectra have moderate signal-to-noise ratio, S/N >~15-30 per pixel. Prior to the start of the FAST observations, we obtained occasional optical spectrophotometric observations of EG And throughout 1982-1989 with the cooled dual-beam intensified Reticon scanner (IRS) mounted on the white spectrograph at the KPNO No. 1 and No. 2 90cm telescopes. Various remote observers acquired high-resolution spectroscopic observations of EG And with the echelle spectrographs and Reticon detectors on the 1.5m telescopes of the Fred L. Whipple Observatory on Mount Hopkins, Arizona and the Oak Ridge Observatory in Harvard, Massachusetts. These spectra cover a 44Å bandpass centered near 5190Å or 5200Å and have a resolution of roughly 12km/s. (1 data file).

System selects framing rate for spectrograph camera

NASA Technical Reports Server (NTRS)

1965-01-01

Circuit using zero-order light is reflected to a photomultiplier in the incoming radiation of a spectrograph monitor to provide an error signal which controls the advancing and driving rate of the film through the camera.

Medically important arboviruses of the United States and Canada.

PubMed Central

Calisher, C H

1994-01-01

Of more than 500 arboviruses recognized worldwide, 5 were first isolated in Canada and 58 were first isolated in the United States. Six of these viruses are human pathogens: western equine encephalitis (WEE) and eastern equine encephalitis (EEE) viruses (family Togaviridae, genus Alphavirus), St. Louis encephalitis (SLE) and Powassan (POW) viruses (Flaviviridae, Flavivirus), LaCrosse (LAC) virus (Bunyaviridae, Bunyavirus), and Colorado tick fever (CTF) virus (Reoviridae, Coltivirus). Their scientific histories, geographic distributions, virology, epidemiology, vectors, vertebrate hosts, transmission, pathogenesis, clinical and differential diagnoses, control, treatment, and laboratory diagnosis are reviewed. In addition, mention is made of the Venezuelan equine encephalitis (VEE) complex viruses (family Togaviridae, genus Alphavirus), which periodically cause human and equine disease in North America. WEE, EEE, and SLE viruses are transmitted by mosquitoes between birds; POW and CTF viruses, between wild mammals by ticks; LAC virus, between small mammals by mosquitoes; and VEE viruses, between small or large mammals by mosquitoes. Human infections are tangential to the natural cycle. Such infections range from rare to focal but are relatively frequent where they occur. Epidemics of WEE, EEE, VEE, and SLE viruses have been recorded at periodic intervals, but prevalence of infections with LAC and CTF viruses typically are constant, related to the degree of exposure to infected vectors. Infections with POW virus appear to be rare. Adequate diagnostic tools are available, but treatment is mainly supportive, and greater efforts at educating the public and the medical community are suggested if infections are to be prevented. PMID:8118792

H1N1 influenza viruses varying widely in hemagglutinin stability transmit efficiently from swine to swine and to ferrets.

PubMed

Russier, Marion; Yang, Guohua; Marinova-Petkova, Atanaska; Vogel, Peter; Kaplan, Bryan S; Webby, Richard J; Russell, Charles J

2017-03-01

A pandemic-capable influenza virus requires a hemagglutinin (HA) surface glycoprotein that is immunologically unseen by most people and is capable of supporting replication and transmission in humans. HA stabilization has been linked to 2009 pH1N1 pandemic potential in humans and H5N1 airborne transmissibility in the ferret model. Swine have served as an intermediate host for zoonotic influenza viruses, yet the evolutionary pressure exerted by this host on HA stability was unknown. For over 70 contemporary swine H1 and H3 isolates, we measured HA activation pH to range from pH 5.1 to 5.9 for H1 viruses and pH 5.3 to 5.8 for H3 viruses. Thus, contemporary swine isolates vary widely in HA stability, having values favored by both avian (pH >5.5) and human and ferret (pH ≤5.5) species. Using an early 2009 pandemic H1N1 (pH1N1) virus backbone, we generated three viruses differing by one HA residue that only altered HA stability: WT (pH 5.5), HA1-Y17H (pH 6.0), and HA2-R106K (pH 5.3). All three replicated in pigs and transmitted from pig-to-pig and pig-to-ferret. WT and R106 viruses maintained HA genotype and phenotype after transmission. Y17H (pH 6.0) acquired HA mutations that stabilized the HA protein to pH 5.8 after transmission to pigs and 5.5 after transmission to ferrets. Overall, we found swine support a broad range of HA activation pH for contact transmission and many recent swine H1N1 and H3N2 isolates have stabilized (human-like) HA proteins. This constitutes a heightened pandemic risk and underscores the importance of ongoing surveillance and control efforts for swine viruses.

H1N1 influenza viruses varying widely in hemagglutinin stability transmit efficiently from swine to swine and to ferrets

PubMed Central

Yang, Guohua; Marinova-Petkova, Atanaska; Kaplan, Bryan S.; Webby, Richard J.

2017-01-01

A pandemic-capable influenza virus requires a hemagglutinin (HA) surface glycoprotein that is immunologically unseen by most people and is capable of supporting replication and transmission in humans. HA stabilization has been linked to 2009 pH1N1 pandemic potential in humans and H5N1 airborne transmissibility in the ferret model. Swine have served as an intermediate host for zoonotic influenza viruses, yet the evolutionary pressure exerted by this host on HA stability was unknown. For over 70 contemporary swine H1 and H3 isolates, we measured HA activation pH to range from pH 5.1 to 5.9 for H1 viruses and pH 5.3 to 5.8 for H3 viruses. Thus, contemporary swine isolates vary widely in HA stability, having values favored by both avian (pH >5.5) and human and ferret (pH ≤5.5) species. Using an early 2009 pandemic H1N1 (pH1N1) virus backbone, we generated three viruses differing by one HA residue that only altered HA stability: WT (pH 5.5), HA1-Y17H (pH 6.0), and HA2-R106K (pH 5.3). All three replicated in pigs and transmitted from pig-to-pig and pig-to-ferret. WT and R106 viruses maintained HA genotype and phenotype after transmission. Y17H (pH 6.0) acquired HA mutations that stabilized the HA protein to pH 5.8 after transmission to pigs and 5.5 after transmission to ferrets. Overall, we found swine support a broad range of HA activation pH for contact transmission and many recent swine H1N1 and H3N2 isolates have stabilized (human-like) HA proteins. This constitutes a heightened pandemic risk and underscores the importance of ongoing surveillance and control efforts for swine viruses. PMID:28282440

Method for detecting viruses in aerosols.

PubMed Central

Wallis, C; Melnick, J L; Rao, V C; Sox, T E

1985-01-01

A simple method with poliovirus as the model was developed for recovering human enteric viruses from aerosols. Filterite filters (pore size, 0.45 micron; Filterite Corp., Timonium, Md.) moistened with glycine buffer (pH 3.5) were used for adsorbing the aerosolized virus. No virus passed the filter, even with air flow rates of 100 liters/min. Virus recovery from the filter was achieved by rapid elution with 800 ml of glycine buffer, pH 10. The virus in the primary eluate was reconcentrated by adjusting the pH to 3.5, adding AlCl3 to 0.0005 M, collecting the virus on a 0.25-micron-pore Filerite disk (diameter, 25 mm) and and eluting with 6 ml of buffer, pH 10. With this method, virus could be detected regularly in aerosols produced by flushing when 3 X 10(8) PFU of poliovirus were present in the toilet bowl. Poliovirus-containing fecal material from two of four infants who had recently received oral polio vaccine also yielded virus in the aerosols when feces containing 2.4 X 10(7) to 4.5 X 10(7) PFU of virus had been added to the toilet bowl. Persons infected with a variety of natural enteric viruses are known to excrete this amount of virus in their daily stools. Images PMID:3004329

Media Messages and Perception of Risk for Ebola Virus Infection, United States

PubMed Central

Boddie, Crystal; McGinty, Emma E.; Pollack, Keshia; Smith, Katherine Clegg; Burke, Thomas A.; Rutkow, Lainie

2017-01-01

News media have been blamed for sensationalizing Ebola in the United States, causing unnecessary alarm. To investigate this issue, we analyzed US-focused news stories about Ebola virus disease during July 1–November 30, 2014. We found frequent use of risk-elevating messages, which may have contributed to increased public concern. PMID:27983495

Complete genome sequence of highly virulent Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) variants that recently emerged in the United States

USDA-ARS?s Scientific Manuscript database

A recent outbreak of particularly virulent disease caused by porcine reproductive and respiratory syndrome virus has occurred in swine herds across the United States. We report here the complete genome sequence of eight viral isolates from four Nebraska herds experiencing an outbreak of severe dise...

Deep Sequencing Reveals the Complete Genome Sequence of Sweet potato virus G from East Timor

PubMed Central

Maina, Solomon; Edwards, Owain R.; Barbetti, Martin J.; de Almeida, Luis; Ximenes, Abel

2016-01-01

We present the first complete Sweet potato virus G (SPVG) genome from sweet potato in East Timor and compare it with seven complete SPVG genomes from South Korea (three), Taiwan (two), Argentina (one), and the United States (one). It most resembles the genomes from the United States and South Korea. PMID:27609925

Using a new, free spectrograph program to critically investigate acoustics

NASA Astrophysics Data System (ADS)

Ball, Edward; Ruiz, Michael J.

2016-11-01

We have developed an online spectrograph program with a bank of over 30 audio clips to visualise a variety of sounds. Our audio library includes everyday sounds such as speech, singing, musical instruments, birds, a baby, cat, dog, sirens, a jet, thunder, and screaming. We provide a link to a video of the sound sources superimposed with their respective spectrograms in real time. Readers can use our spectrograph program to view our library, open their own desktop audio files, and use the program in real time with a computer microphone.

Prevalence of Hepatitis E Virus Infection in Pigs at the Time of Slaughter, United Kingdom, 2013.

PubMed

Grierson, Sylvia; Heaney, Judith; Cheney, Tanya; Morgan, Dilys; Wyllie, Stephen; Powell, Laura; Smith, Donald; Ijaz, Samreen; Steinbach, Falko; Choudhury, Bhudipa; Tedder, Richard S

2015-08-01

Since 2010, reports of infection with hepatitis E virus (HEV) have increased in England and Wales. Despite mounting evidence regarding the zoonotic potential of porcine HEV, there are limited data on its prevalence in pigs in the United Kingdom. We investigated antibody prevalence, active infection, and virus variation in serum and cecal content samples from 629 pigs at slaughter. Prevalence of antibodies to HEV was 92.8% (584/629), and HEV RNA was detected in 15% of cecal contents (93/629), 3% of plasma samples (22/629), and 2% of both (14/629). However, although HEV is prevalent in pigs in the United Kingdom and viremic pigs are entering the food chain, most (22/23) viral sequences clustered separately from the dominant type seen in humans. Thus, pigs raised in the United Kingdom are unlikely to be the main source of human HEV infections in the United Kingdom. Further research is needed to identify the source of these infections.

Production, purification and preliminary X-ray crystallographic studies of adeno-associated virus serotype 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, Edward B.; Gurda-Whitaker, Brittney; Govindasamy, Lakshmanan

2006-12-01

Crystals of baculovirus-expressed adeno-associated virus serotype 1 (AAV1) capsids have been grown in the rhombohedral space group R32 (unit-cell parameters a = 254.7 Å, α = 62.3°) and shown to diffract X-rays to at least 2.5 Å resolution. Crystals of baculovirus-expressed adeno-associated virus serotype 1 (AAV1) capsids have been grown in the rhombohedral space group R32 (unit-cell parameters a = 254.7 Å, α = 62.3°) and shown to diffract X-rays to at least 2.5 Å resolution. The diffraction data were subsequently processed and reduced with an overall R{sub sym} of 12.3% and a completeness of 89.0%. Based on the unit-cellmore » volume, rotation-function and translation-function results and packing considerations, there is one virus capsid (60 viral proteins) per unit cell and there are ten viral proteins per crystallographic asymmetric unit. The AAV1 capsid shares both the twofold and threefold crystallographic symmetry operators. The AAV1 data have been initially phased using a polyalanine model (based on the crystal structure of AAV4) to 4.0 Å resolution and the structure determination and refinement is in progress using tenfold noncrystallographic symmetry electron-density averaging.« less

Optimizing surveillance for South American origin influenza A viruses along the United States Gulf Coast through genomic characterization of isolates from blue-winged teal (Anas discors)

USGS Publications Warehouse

Ramey, Andy M.; Walther, Patrick; Link, Paul Karl; Poulson, Rebecca L.; Wilcox, Benjamin R.; Newsome, George M.; Spackman, Erica; Brown, J.; Stallknecht, David E.

2016-01-01

Relative to research focused on intercontinental viral exchange between Eurasia and North America, less attention has been directed towards understanding the redistribution of influenza A viruses (IAVs) by wild birds between North America and South America. In this study, we genomically characterized 45 viruses isolated from blue-winged teal (Anas discors) along the Texas and Louisiana Gulf Coast during March of 2012 and 2013, coincident with northward migration of this species from Neotropical wintering areas to breeding grounds in the United States and Canada. No evidence of South American lineage genes were detected in IAVs isolated from blue-winged teal supporting restricted viral gene flow between the United States and southern South America. However, it is plausible that blue-winged teal redistribute IAVs between North American breeding grounds and wintering areas throughout the Neotropics, including northern South America, and that viral gene flow is limited by geographical barriers further south (e.g. the Amazon Basin). Surveillance for the introduction of IAVs from Central America and northern South America into the United States may be further optimized through genomic characterization of viruses resulting from coordinated, concurrent sampling efforts targeting blue-winged teal and sympatric species throughout the Neotropics and along the United States Gulf Coast.

Monoclonal antibodies specific for African swine fever virus proteins.

PubMed Central

Sanz, A; García-Barreno, B; Nogal, M L; Viñuela, E; Enjuanes, L

1985-01-01

We have obtained 60 stable hybridomas which produced immunoglobulins that recognized 12 proteins from African swine fever virus particles and African swine fever virus-infected cells. Most of the monoclonal antibodies were specific for the three major structural proteins p150, p72, and p12. The specificity of some monoclonal antibodies for the structural proteins p150 and p37 and the nonstructural proteins p220 and p60 indicated that proteins p150 and p220 are antigenically related to proteins p37 and p60. The association of some viral antigens to specific subcellular components was determined by immunofluorescence and analysis of the binding of monoclonal antibodies to infected cells. A host protein (p24) seemed to be associated with the virus particles. Images PMID:3882998

Species and interspecies radioimmunoassays for rat type C virus p30: interviral comparisons and assay of human tumor extracts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Charman, H.P.; White, M.H.; Rahman, R.

1976-01-01

The major internal protein, p30, of rat type C virus (RaLV) was purified and utilized to establish intra- and interspecies radioimmunoassays. Three rat viruses were compared in homologous and heterologous intraspecies assays with no evidence of type specificity. The only heterologous viruses to give inhibition in these species assays were the feline (FeLV) and hamster (HaLV) type C viruses; these reactions were incomplete and required high virus concentrations. An interspecies assay using a goat antiserum prepared after sequentially immunizing with FeLV, RD 114, and woolly monkey virus p30's and labeled RaLV p30 was inhibited by all mammalian type C viruses,more » although preferentially by RaLV, FeLV, and HaLV. Thus, as in a previously reported assay developed with HaLV p30, rat, hamster, and cat p30's seem more closely related to each other than to mouse type C virus p30. High levels of specific antigen were found in all cell lines producing rat virus, whereas embryonic tissues from several rat strains and cell lines considered virus-free based on other tests were negative for p30. Rats bearing tumors containing Moloney murine sarcoma virus (RaLV) did not contain free circulating antibody to RaLV p30. Fifty-one human tumor extracts (including two tumor cell lines) were tested for activity in the RaLV species and 47 in the interspecies assays after Sephadex gel filtration and pooling of material in the 15,000- to 40,000-molecular-weight range. At a sensitivity level of 7 ng/ml (0.7 ng/assay) in the interspecies assay, all human tissues, with one exception, were negative. The one positive result is considered nonspecific based on proteolysis of the labeled antigen. Input tissue protein of the purified tumor extracts averaged 1.9 mg/ml with a range of less than 0.025 to 22 mg/ml. Tissues from NIH Swiss mice processed in the same manner were positive in the interspecies assay but negative in the intraspecies RaLV assay. (auth)« less

Procedure for rapid concentration and detection of enteric viruses from berries and vegetables.

PubMed

Butot, S; Putallaz, T; Sánchez, G

2007-01-01

Several hepatitis A virus (HAV) and norovirus (NV) outbreaks due to consumption of berries and vegetables have been reported during recent years. To facilitate the detection of enteric viruses that may be present on different fresh and frozen products, we developed a rapid and sensitive detection method for HAV, NV, and rotavirus (RV). Initial experiments focused on optimizing the composition of the elution buffer, improving the viral concentration method, and evaluating the performance of various extraction kits. Viruses were extracted from the food surface by a direct elution method in a glycine-Tris (pH 9.5) buffer containing 1% beef extract and concentrated by ultrafiltration. Occasionally, PCR inhibitors were present in the processed berry samples, which gave relatively poor detection limits. However, this problem was overcome by adding a pectinase treatment in the protocol, which markedly improved the sensitivity of the method. After optimization, this concentration method was applied in combination with real-time reverse transcription-PCR (RT-PCR) using specific primers in various types of berries and vegetables. The average detection limits were 1 50% tissue culture infective dose (TCID(50)), 54 RT-PCR units, and 0.02 TCID(50) per 15 g of food for HAV, NV, and RV, respectively. Based on our results, it is concluded that this procedure is suitable to detect and quantify enteric viruses within 6 h and can be applied for surveillance of enteric viruses in fresh and frozen products.

Prevalence, diversity and co-occurrence of the white spot syndrome virus, monodon baculovirus and Penaeus stylirostris densovirus in wild populations of Penaeus monodon in the Philippines.

PubMed

Orosco, Fredmoore L; Lluisma, Arturo O

2017-08-09

The farming of the black tiger shrimp Penaeus monodon in the Philippines relies on wild broodstock. PCR was thus used to determine the prevalence of white spot syndrome virus (WSSV), monodon baculovirus (MBV) and Penaeus stylirostris densovirus (PstDV) in a total of 178 shrimp from 6 geographically disparate locations where broodstock are captured for use in hatcheries. PCR amplicons were also sequenced to identify phylogenetic relationships of the virus haplotypes detected. Shrimp from southeastern Luzon (Camarines Norte) had the highest prevalence of each of the 3 viruses and were frequently co-infected with 2 or more viruses. No viruses were detected in shrimp from northwestern Luzon (Pangasinan). MBV was most prevalent and PstDV strains displayed the most genetic diversity. WSSV was detected at 3 sites, and a VP28 gene sequence examined was invariant and consistent with strains found in many countries, including Thailand, China, Japan, Korea, Indonesia, Iran, Brazil and Mexico. WSSV open reading frame 94 gene sequence analysis identified location-specific repeat types. MBV sequences were dissimilar to haplotypes detected in India. PstDV sequences were diverse and included 2 lineages detected either in Australia or in the United States, Ecuador, Taiwan, China and Vietnam. The PCR data confirmed that WSSV, MBV and PstDV are endemic in P. monodon in the Philippines but that populations at some locations might remain free of infection.

Membrane vesiculation induced by proteins of the dengue virus envelope studied by molecular dynamics simulations.

PubMed

de Oliveira Dos Santos Soares, Ricardo; Bortot, Leandro Oliveira; van der Spoel, David; Caliri, Antonio

2017-12-20

Biological membranes are continuously remodeled in the cell by specific membrane-shaping machineries to form, for example, tubes and vesicles. We examine fundamental mechanisms involved in the vesiculation processes induced by a cluster of envelope (E) and membrane (M) proteins of the dengue virus (DENV) using molecular dynamics simulations and a coarse-grained model. We show that an arrangement of three E-M heterotetramers (EM 3 ) works as a bending unit and an ordered cluster of five such units generates a closed vesicle, reminiscent of the virus budding process. In silico mutagenesis of two charged residues of the anchor helices of the envelope proteins of DENV shows that Arg-471 and Arg-60 are fundamental to produce bending stress on the membrane. The fine-tuning between the size of the EM 3 unit and its specific bending action suggests this protein unit is an important factor in determining the viral particle size.

Membrane vesiculation induced by proteins of the dengue virus envelope studied by molecular dynamics simulations

NASA Astrophysics Data System (ADS)

de Oliveira dos Santos Soares, Ricardo; Oliveira Bortot, Leandro; van der Spoel, David; Caliri, Antonio

2017-12-01

Biological membranes are continuously remodeled in the cell by specific membrane-shaping machineries to form, for example, tubes and vesicles. We examine fundamental mechanisms involved in the vesiculation processes induced by a cluster of envelope (E) and membrane (M) proteins of the dengue virus (DENV) using molecular dynamics simulations and a coarse-grained model. We show that an arrangement of three E-M heterotetramers (EM3) works as a bending unit and an ordered cluster of five such units generates a closed vesicle, reminiscent of the virus budding process. In silico mutagenesis of two charged residues of the anchor helices of the envelope proteins of DENV shows that Arg-471 and Arg-60 are fundamental to produce bending stress on the membrane. The fine-tuning between the size of the EM3 unit and its specific bending action suggests this protein unit is an important factor in determining the viral particle size.

Structural basis for the development of avian virus capsids that display influenza virus proteins and induce protective immunity.

PubMed

Pascual, Elena; Mata, Carlos P; Gómez-Blanco, Josué; Moreno, Noelia; Bárcena, Juan; Blanco, Esther; Rodríguez-Frandsen, Ariel; Nieto, Amelia; Carrascosa, José L; Castón, José R

2015-03-01

Bioengineering of viruses and virus-like particles (VLPs) is a well-established approach in the development of new and improved vaccines against viral and bacterial pathogens. We report here that the capsid of a major avian pathogen, infectious bursal disease virus (IBDV), can accommodate heterologous proteins to induce protective immunity. The structural units of the ~70-nm-diameter T=13 IBDV capsid are trimers of VP2, which is made as a precursor (pVP2). The pVP2 C-terminal domain has an amphipathic α helix that controls VP2 polymorphism. In the absence of the VP3 scaffolding protein, 466-residue pVP2 intermediates bearing this α helix assemble into genuine VLPs only when expressed with an N-terminal His6 tag (the HT-VP2-466 protein). HT-VP2-466 capsids are optimal for protein insertion, as they are large enough (cargo space, ~78,000 nm(3)) and are assembled from a single protein. We explored HT-VP2-466-based chimeric capsids initially using enhanced green fluorescent protein (EGFP). The VLP assembly yield was efficient when we coexpressed EGFP-HT-VP2-466 and HT-VP2-466 from two recombinant baculoviruses. The native EGFP structure (~240 copies/virion) was successfully inserted in a functional form, as VLPs were fluorescent, and three-dimensional cryo-electron microscopy showed that the EGFP molecules incorporated at the inner capsid surface. Immunization of mice with purified EGFP-VLPs elicited anti-EGFP antibodies. We also inserted hemagglutinin (HA) and matrix (M2) protein epitopes derived from the mouse-adapted A/PR/8/34 influenza virus and engineered several HA- and M2-derived chimeric capsids. Mice immunized with VLPs containing the HA stalk, an M2 fragment, or both antigens developed full protection against viral challenge. Virus-like particles (VLPs) are multimeric protein cages that mimic the infectious virus capsid and are potential candidates as nonliving vaccines that induce long-lasting protection. Chimeric VLPs can display or include foreign antigens, which could be a conserved epitope to elicit broadly neutralizing antibodies or several variable epitopes effective against a large number of viral strains. We report the biochemical, structural, and immunological characterization of chimeric VLPs derived from infectious bursal disease virus (IBDV), an important poultry pathogen. To test the potential of IBDV VLPs as a vaccine vehicle, we used the enhanced green fluorescent protein and two fragments derived from the hemagglutinin and the M2 matrix protein of the human murine-adapted influenza virus. The IBDV capsid protein fused to influenza virus peptides formed assemblies able to protect mice against viral challenge. Our studies establish the basis for a new generation of multivalent IBDV-based vaccines. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Autonomic symptoms following Zika virus infection.

PubMed

Rodríguez, Yhojan; Rojas, Manuel; Ramírez-Santana, Carolina; Acosta-Ampudia, Yeny; Monsalve, Diana M; Anaya, Juan-Manuel

2018-04-01

To determine if autonomic symptoms are associated with previous Zika virus infection. Case-control study including 35 patients with Zika virus infection without evidence of neurological disease and 105 controls. Symptoms of autonomic dysfunction were assessed with the composite autonomic symptom scale 31 (COMPASS-31). Patients with previous Zika virus infection had significantly higher COMPASS-31 score than controls regardless of age and sex (p = 0.007). The main drivers for the higher scores where orthostatic intolerance (p = 0.003), secretomotor (p = 0.04) and bladder symptoms (p < 0.001). Zika virus infection is associated with autonomic dysfunction. The mechanisms remain to be elucidated.