Unsupervised classification of operator workload from brain signals.

PubMed

Schultze-Kraft, Matthias; Dähne, Sven; Gugler, Manfred; Curio, Gabriel; Blankertz, Benjamin

2016-06-01

In this study we aimed for the classification of operator workload as it is expected in many real-life workplace environments. We explored brain-signal based workload predictors that differ with respect to the level of label information required for training, including entirely unsupervised approaches. Subjects executed a task on a touch screen that required continuous effort of visual and motor processing with alternating difficulty. We first employed classical approaches for workload state classification that operate on the sensor space of EEG and compared those to the performance of three state-of-the-art spatial filtering methods: common spatial patterns (CSPs) analysis, which requires binary label information; source power co-modulation (SPoC) analysis, which uses the subjects' error rate as a target function; and canonical SPoC (cSPoC) analysis, which solely makes use of cross-frequency power correlations induced by different states of workload and thus represents an unsupervised approach. Finally, we investigated the effects of fusing brain signals and peripheral physiological measures (PPMs) and examined the added value for improving classification performance. Mean classification accuracies of 94%, 92% and 82% were achieved with CSP, SPoC, cSPoC, respectively. These methods outperformed the approaches that did not use spatial filtering and they extracted physiologically plausible components. The performance of the unsupervised cSPoC is significantly increased by augmenting it with PPM features. Our analyses ensured that the signal sources used for classification were of cortical origin and not contaminated with artifacts. Our findings show that workload states can be successfully differentiated from brain signals, even when less and less information from the experimental paradigm is used, thus paving the way for real-world applications in which label information may be noisy or entirely unavailable.

Unsupervised classification of operator workload from brain signals

NASA Astrophysics Data System (ADS)

Schultze-Kraft, Matthias; Dähne, Sven; Gugler, Manfred; Curio, Gabriel; Blankertz, Benjamin

2016-06-01

Objective. In this study we aimed for the classification of operator workload as it is expected in many real-life workplace environments. We explored brain-signal based workload predictors that differ with respect to the level of label information required for training, including entirely unsupervised approaches. Approach. Subjects executed a task on a touch screen that required continuous effort of visual and motor processing with alternating difficulty. We first employed classical approaches for workload state classification that operate on the sensor space of EEG and compared those to the performance of three state-of-the-art spatial filtering methods: common spatial patterns (CSPs) analysis, which requires binary label information; source power co-modulation (SPoC) analysis, which uses the subjects’ error rate as a target function; and canonical SPoC (cSPoC) analysis, which solely makes use of cross-frequency power correlations induced by different states of workload and thus represents an unsupervised approach. Finally, we investigated the effects of fusing brain signals and peripheral physiological measures (PPMs) and examined the added value for improving classification performance. Main results. Mean classification accuracies of 94%, 92% and 82% were achieved with CSP, SPoC, cSPoC, respectively. These methods outperformed the approaches that did not use spatial filtering and they extracted physiologically plausible components. The performance of the unsupervised cSPoC is significantly increased by augmenting it with PPM features. Significance. Our analyses ensured that the signal sources used for classification were of cortical origin and not contaminated with artifacts. Our findings show that workload states can be successfully differentiated from brain signals, even when less and less information from the experimental paradigm is used, thus paving the way for real-world applications in which label information may be noisy or entirely unavailable.

Unsupervised detection of salt marsh platforms: a topographic method

NASA Astrophysics Data System (ADS)

Goodwin, Guillaume C. H.; Mudd, Simon M.; Clubb, Fiona J.

2018-03-01

Salt marshes filter pollutants, protect coastlines against storm surges, and sequester carbon, yet are under threat from sea level rise and anthropogenic modification. The sustained existence of the salt marsh ecosystem depends on the topographic evolution of marsh platforms. Quantifying marsh platform topography is vital for improving the management of these valuable landscapes. The determination of platform boundaries currently relies on supervised classification methods requiring near-infrared data to detect vegetation, or demands labour-intensive field surveys and digitisation. We propose a novel, unsupervised method to reproducibly isolate salt marsh scarps and platforms from a digital elevation model (DEM), referred to as Topographic Identification of Platforms (TIP). Field observations and numerical models show that salt marshes mature into subhorizontal platforms delineated by subvertical scarps. Based on this premise, we identify scarps as lines of local maxima on a slope raster, then fill landmasses from the scarps upward, thus isolating mature marsh platforms. We test the TIP method using lidar-derived DEMs from six salt marshes in England with varying tidal ranges and geometries, for which topographic platforms were manually isolated from tidal flats. Agreement between manual and unsupervised classification exceeds 94 % for DEM resolutions of 1 m, with all but one site maintaining an accuracy superior to 90 % for resolutions up to 3 m. For resolutions of 1 m, platforms detected with the TIP method are comparable in surface area to digitised platforms and have similar elevation distributions. We also find that our method allows for the accurate detection of local block failures as small as 3 times the DEM resolution. Detailed inspection reveals that although tidal creeks were digitised as part of the marsh platform, unsupervised classification categorises them as part of the tidal flat, causing an increase in false negatives and overall platform perimeter. This suggests our method may benefit from combination with existing creek detection algorithms. Fallen blocks and high tidal flat portions, associated with potential pioneer zones, can also lead to differences between our method and supervised mapping. Although pioneer zones prove difficult to classify using a topographic method, we suggest that these transition areas should be considered when analysing erosion and accretion processes, particularly in the case of incipient marsh platforms. Ultimately, we have shown that unsupervised classification of marsh platforms from high-resolution topography is possible and sufficient to monitor and analyse topographic evolution.

Semi-supervised classification tool for DubaiSat-2 multispectral imagery

NASA Astrophysics Data System (ADS)

Al-Mansoori, Saeed

2015-10-01

This paper addresses a semi-supervised classification tool based on a pixel-based approach of the multi-spectral satellite imagery. There are not many studies demonstrating such algorithm for the multispectral images, especially when the image consists of 4 bands (Red, Green, Blue and Near Infrared) as in DubaiSat-2 satellite images. The proposed approach utilizes both unsupervised and supervised classification schemes sequentially to identify four classes in the image, namely, water bodies, vegetation, land (developed and undeveloped areas) and paved areas (i.e. roads). The unsupervised classification concept is applied to identify two classes; water bodies and vegetation, based on a well-known index that uses the distinct wavelengths of visible and near-infrared sunlight that is absorbed and reflected by the plants to identify the classes; this index parameter is called "Normalized Difference Vegetation Index (NDVI)". Afterward, the supervised classification is performed by selecting training homogenous samples for roads and land areas. Here, a precise selection of training samples plays a vital role in the classification accuracy. Post classification is finally performed to enhance the classification accuracy, where the classified image is sieved, clumped and filtered before producing final output. Overall, the supervised classification approach produced higher accuracy than the unsupervised method. This paper shows some current preliminary research results which point out the effectiveness of the proposed technique in a virtual perspective.

An unsupervised classification technique for multispectral remote sensing data.

NASA Technical Reports Server (NTRS)

Su, M. Y.; Cummings, R. E.

1973-01-01

Description of a two-part clustering technique consisting of (a) a sequential statistical clustering, which is essentially a sequential variance analysis, and (b) a generalized K-means clustering. In this composite clustering technique, the output of (a) is a set of initial clusters which are input to (b) for further improvement by an iterative scheme. This unsupervised composite technique was employed for automatic classification of two sets of remote multispectral earth resource observations. The classification accuracy by the unsupervised technique is found to be comparable to that by traditional supervised maximum-likelihood classification techniques.

Unsupervised classification of earth resources data.

NASA Technical Reports Server (NTRS)

Su, M. Y.; Jayroe, R. R., Jr.; Cummings, R. E.

1972-01-01

A new clustering technique is presented. It consists of two parts: (a) a sequential statistical clustering which is essentially a sequential variance analysis and (b) a generalized K-means clustering. In this composite clustering technique, the output of (a) is a set of initial clusters which are input to (b) for further improvement by an iterative scheme. This unsupervised composite technique was employed for automatic classification of two sets of remote multispectral earth resource observations. The classification accuracy by the unsupervised technique is found to be comparable to that by existing supervised maximum liklihood classification technique.

Shadow detection and removal in RGB VHR images for land use unsupervised classification

NASA Astrophysics Data System (ADS)

Movia, A.; Beinat, A.; Crosilla, F.

2016-09-01

Nowadays, high resolution aerial images are widely available thanks to the diffusion of advanced technologies such as UAVs (Unmanned Aerial Vehicles) and new satellite missions. Although these developments offer new opportunities for accurate land use analysis and change detection, cloud and terrain shadows actually limit benefits and possibilities of modern sensors. Focusing on the problem of shadow detection and removal in VHR color images, the paper proposes new solutions and analyses how they can enhance common unsupervised classification procedures for identifying land use classes related to the CO2 absorption. To this aim, an improved fully automatic procedure has been developed for detecting image shadows using exclusively RGB color information, and avoiding user interaction. Results show a significant accuracy enhancement with respect to similar methods using RGB based indexes. Furthermore, novel solutions derived from Procrustes analysis have been applied to remove shadows and restore brightness in the images. In particular, two methods implementing the so called "anisotropic Procrustes" and the "not-centered oblique Procrustes" algorithms have been developed and compared with the linear correlation correction method based on the Cholesky decomposition. To assess how shadow removal can enhance unsupervised classifications, results obtained with classical methods such as k-means, maximum likelihood, and self-organizing maps, have been compared to each other and with a supervised clustering procedure.

Unsupervised learning of discriminative edge measures for vehicle matching between nonoverlapping cameras.

PubMed

Shan, Ying; Sawhney, Harpreet S; Kumar, Rakesh

2008-04-01

This paper proposes a novel unsupervised algorithm learning discriminative features in the context of matching road vehicles between two non-overlapping cameras. The matching problem is formulated as a same-different classification problem, which aims to compute the probability of vehicle images from two distinct cameras being from the same vehicle or different vehicle(s). We employ a novel measurement vector that consists of three independent edge-based measures and their associated robust measures computed from a pair of aligned vehicle edge maps. The weight of each measure is determined by an unsupervised learning algorithm that optimally separates the same-different classes in the combined measurement space. This is achieved with a weak classification algorithm that automatically collects representative samples from same-different classes, followed by a more discriminative classifier based on Fisher' s Linear Discriminants and Gibbs Sampling. The robustness of the match measures and the use of unsupervised discriminant analysis in the classification ensures that the proposed method performs consistently in the presence of missing/false features, temporally and spatially changing illumination conditions, and systematic misalignment caused by different camera configurations. Extensive experiments based on real data of over 200 vehicles at different times of day demonstrate promising results.

Unsupervised Cryo-EM Data Clustering through Adaptively Constrained K-Means Algorithm

PubMed Central

Xu, Yaofang; Wu, Jiayi; Yin, Chang-Cheng; Mao, Youdong

2016-01-01

In single-particle cryo-electron microscopy (cryo-EM), K-means clustering algorithm is widely used in unsupervised 2D classification of projection images of biological macromolecules. 3D ab initio reconstruction requires accurate unsupervised classification in order to separate molecular projections of distinct orientations. Due to background noise in single-particle images and uncertainty of molecular orientations, traditional K-means clustering algorithm may classify images into wrong classes and produce classes with a large variation in membership. Overcoming these limitations requires further development on clustering algorithms for cryo-EM data analysis. We propose a novel unsupervised data clustering method building upon the traditional K-means algorithm. By introducing an adaptive constraint term in the objective function, our algorithm not only avoids a large variation in class sizes but also produces more accurate data clustering. Applications of this approach to both simulated and experimental cryo-EM data demonstrate that our algorithm is a significantly improved alterative to the traditional K-means algorithm in single-particle cryo-EM analysis. PMID:27959895

Unsupervised Cryo-EM Data Clustering through Adaptively Constrained K-Means Algorithm.

PubMed

Xu, Yaofang; Wu, Jiayi; Yin, Chang-Cheng; Mao, Youdong

2016-01-01

In single-particle cryo-electron microscopy (cryo-EM), K-means clustering algorithm is widely used in unsupervised 2D classification of projection images of biological macromolecules. 3D ab initio reconstruction requires accurate unsupervised classification in order to separate molecular projections of distinct orientations. Due to background noise in single-particle images and uncertainty of molecular orientations, traditional K-means clustering algorithm may classify images into wrong classes and produce classes with a large variation in membership. Overcoming these limitations requires further development on clustering algorithms for cryo-EM data analysis. We propose a novel unsupervised data clustering method building upon the traditional K-means algorithm. By introducing an adaptive constraint term in the objective function, our algorithm not only avoids a large variation in class sizes but also produces more accurate data clustering. Applications of this approach to both simulated and experimental cryo-EM data demonstrate that our algorithm is a significantly improved alterative to the traditional K-means algorithm in single-particle cryo-EM analysis.

Classification of earth terrain using polarimetric synthetic aperture radar images

NASA Technical Reports Server (NTRS)

Lim, H. H.; Swartz, A. A.; Yueh, H. A.; Kong, J. A.; Shin, R. T.; Van Zyl, J. J.

1989-01-01

Supervised and unsupervised classification techniques are developed and used to classify the earth terrain components from SAR polarimetric images of San Francisco Bay and Traverse City, Michigan. The supervised techniques include the Bayes classifiers, normalized polarimetric classification, and simple feature classification using discriminates such as the absolute and normalized magnitude response of individual receiver channel returns and the phase difference between receiver channels. An algorithm is developed as an unsupervised technique which classifies terrain elements based on the relationship between the orientation angle and the handedness of the transmitting and receiving polariation states. It is found that supervised classification produces the best results when accurate classifier training data are used, while unsupervised classification may be applied when training data are not available.

Manifold Learning in MR spectroscopy using nonlinear dimensionality reduction and unsupervised clustering.

PubMed

Yang, Guang; Raschke, Felix; Barrick, Thomas R; Howe, Franklyn A

2015-09-01

To investigate whether nonlinear dimensionality reduction improves unsupervised classification of (1) H MRS brain tumor data compared with a linear method. In vivo single-voxel (1) H magnetic resonance spectroscopy (55 patients) and (1) H magnetic resonance spectroscopy imaging (MRSI) (29 patients) data were acquired from histopathologically diagnosed gliomas. Data reduction using Laplacian eigenmaps (LE) or independent component analysis (ICA) was followed by k-means clustering or agglomerative hierarchical clustering (AHC) for unsupervised learning to assess tumor grade and for tissue type segmentation of MRSI data. An accuracy of 93% in classification of glioma grade II and grade IV, with 100% accuracy in distinguishing tumor and normal spectra, was obtained by LE with unsupervised clustering, but not with the combination of k-means and ICA. With (1) H MRSI data, LE provided a more linear distribution of data for cluster analysis and better cluster stability than ICA. LE combined with k-means or AHC provided 91% accuracy for classifying tumor grade and 100% accuracy for identifying normal tissue voxels. Color-coded visualization of normal brain, tumor core, and infiltration regions was achieved with LE combined with AHC. The LE method is promising for unsupervised clustering to separate brain and tumor tissue with automated color-coding for visualization of (1) H MRSI data after cluster analysis. © 2014 Wiley Periodicals, Inc.

Unsupervised semantic indoor scene classification for robot vision based on context of features using Gist and HSV-SIFT

NASA Astrophysics Data System (ADS)

Madokoro, H.; Yamanashi, A.; Sato, K.

2013-08-01

This paper presents an unsupervised scene classification method for actualizing semantic recognition of indoor scenes. Background and foreground features are respectively extracted using Gist and color scale-invariant feature transform (SIFT) as feature representations based on context. We used hue, saturation, and value SIFT (HSV-SIFT) because of its simple algorithm with low calculation costs. Our method creates bags of features for voting visual words created from both feature descriptors to a two-dimensional histogram. Moreover, our method generates labels as candidates of categories for time-series images while maintaining stability and plasticity together. Automatic labeling of category maps can be realized using labels created using adaptive resonance theory (ART) as teaching signals for counter propagation networks (CPNs). We evaluated our method for semantic scene classification using KTH's image database for robot localization (KTH-IDOL), which is popularly used for robot localization and navigation. The mean classification accuracies of Gist, gray SIFT, one class support vector machines (OC-SVM), position-invariant robust features (PIRF), and our method are, respectively, 39.7, 58.0, 56.0, 63.6, and 79.4%. The result of our method is 15.8% higher than that of PIRF. Moreover, we applied our method for fine classification using our original mobile robot. We obtained mean classification accuracy of 83.2% for six zones.

Learning from label proportions in brain-computer interfaces: Online unsupervised learning with guarantees

PubMed Central

Verhoeven, Thibault; Schmid, Konstantin; Müller, Klaus-Robert; Tangermann, Michael; Kindermans, Pieter-Jan

2017-01-01

Objective Using traditional approaches, a brain-computer interface (BCI) requires the collection of calibration data for new subjects prior to online use. Calibration time can be reduced or eliminated e.g., by subject-to-subject transfer of a pre-trained classifier or unsupervised adaptive classification methods which learn from scratch and adapt over time. While such heuristics work well in practice, none of them can provide theoretical guarantees. Our objective is to modify an event-related potential (ERP) paradigm to work in unison with the machine learning decoder, and thus to achieve a reliable unsupervised calibrationless decoding with a guarantee to recover the true class means. Method We introduce learning from label proportions (LLP) to the BCI community as a new unsupervised, and easy-to-implement classification approach for ERP-based BCIs. The LLP estimates the mean target and non-target responses based on known proportions of these two classes in different groups of the data. We present a visual ERP speller to meet the requirements of LLP. For evaluation, we ran simulations on artificially created data sets and conducted an online BCI study with 13 subjects performing a copy-spelling task. Results Theoretical considerations show that LLP is guaranteed to minimize the loss function similar to a corresponding supervised classifier. LLP performed well in simulations and in the online application, where 84.5% of characters were spelled correctly on average without prior calibration. Significance The continuously adapting LLP classifier is the first unsupervised decoder for ERP BCIs guaranteed to find the optimal decoder. This makes it an ideal solution to avoid tedious calibration sessions. Additionally, LLP works on complementary principles compared to existing unsupervised methods, opening the door for their further enhancement when combined with LLP. PMID:28407016

A SOFTWARE PACKAGE FOR UNSUPERVISED PATTERN RECOGNITION AND SYNOPTIC REPRESENTATION OF RESULTS: APPLICATION TO VOLCANIC TREMOR DATA OF MT ETNA

NASA Astrophysics Data System (ADS)

Langer, H. K.; Falsaperla, S. M.; Behncke, B.; Messina, A.; Spampinato, S.

2009-12-01

Artificial Intelligence (AI) has found broad applications in volcano observatories worldwide with the aim of reducing volcanic hazard. The need to process larger and larger quantity of data makes indeed AI techniques appealing for monitoring purposes. Tools based on Artificial Neural Networks and Support Vector Machine have proved to be particularly successful in the classification of seismic events and volcanic tremor changes heralding eruptive activity, such as paroxysmal explosions and lava fountaining at Stromboli and Mt Etna, Italy (e.g., Falsaperla et al., 1996; Langer et al., 2009). Moving on from the excellent results obtained from these applications, we present KKAnalysis, a MATLAB based software which combines several unsupervised pattern classification methods, exploiting routines of the SOM Toolbox 2 for MATLAB (http://www.cis.hut.fi/projects/somtoolbox). KKAnalysis is based on Self Organizing Maps (SOM) and clustering methods consisting of K-Means, Fuzzy C-Means, and a scheme based on a metrics accounting for correlation between components of the feature vector. We show examples of applications of this tool to volcanic tremor data recorded at Mt Etna between 2007 and 2009. This time span - during which Strombolian explosions, 7 episodes of lava fountaining and effusive activity occurred - is particularly interesting, as it encompassed different states of volcanic activity (i.e., non-eruptive, eruptive according to different styles) for the unsupervised classifier to identify, highlighting their development in time. Even subtle changes in the signal characteristics allow the unsupervised classifier to recognize features belonging to the different classes and stages of volcanic activity. A convenient color-code representation shows up the temporal development of the different classes of signal, making this method extremely helpful for monitoring purposes and surveillance. Though being developed for volcanic tremor classification, KKAnalysis is generally applicable to any type of physical or chemical pattern, provided that feature vectors are given in numerical form. References: Falsaperla, S., S. Graziani, G. Nunnari, and S. Spampinato (1996). Automatic classification of volcanic earthquakes by using multy-layered neural networks. Natural Hazard, 13, 205-228. Langer, H., S. Falsaperla, M. Masotti, R. Campanini, S. Spampinato, and A. Messina (2008). Synopsis of supervised and unsupervised pattern classification techniques applied to volcanic tremor data at Mt Etna, Italy. Geophys. J. Int., doi:10.1111/j.1365-246X.2009.04179.x.

Unsupervised learning on scientific ocean drilling datasets from the South China Sea

NASA Astrophysics Data System (ADS)

Tse, Kevin C.; Chiu, Hon-Chim; Tsang, Man-Yin; Li, Yiliang; Lam, Edmund Y.

2018-06-01

Unsupervised learning methods were applied to explore data patterns in multivariate geophysical datasets collected from ocean floor sediment core samples coming from scientific ocean drilling in the South China Sea. Compared to studies on similar datasets, but using supervised learning methods which are designed to make predictions based on sample training data, unsupervised learning methods require no a priori information and focus only on the input data. In this study, popular unsupervised learning methods including K-means, self-organizing maps, hierarchical clustering and random forest were coupled with different distance metrics to form exploratory data clusters. The resulting data clusters were externally validated with lithologic units and geologic time scales assigned to the datasets by conventional methods. Compact and connected data clusters displayed varying degrees of correspondence with existing classification by lithologic units and geologic time scales. K-means and self-organizing maps were observed to perform better with lithologic units while random forest corresponded best with geologic time scales. This study sets a pioneering example of how unsupervised machine learning methods can be used as an automatic processing tool for the increasingly high volume of scientific ocean drilling data.

Classification of ROTSE Variable Stars using Machine Learning

NASA Astrophysics Data System (ADS)

Wozniak, P. R.; Akerlof, C.; Amrose, S.; Brumby, S.; Casperson, D.; Gisler, G.; Kehoe, R.; Lee, B.; Marshall, S.; McGowan, K. E.; McKay, T.; Perkins, S.; Priedhorsky, W.; Rykoff, E.; Smith, D. A.; Theiler, J.; Vestrand, W. T.; Wren, J.; ROTSE Collaboration

2001-12-01

We evaluate several Machine Learning algorithms as potential tools for automated classification of variable stars. Using the ROTSE sample of ~1800 variables from a pilot study of 5% of the whole sky, we compare the effectiveness of a supervised technique (Support Vector Machines, SVM) versus unsupervised methods (K-means and Autoclass). There are 8 types of variables in the sample: RR Lyr AB, RR Lyr C, Delta Scuti, Cepheids, detached eclipsing binaries, contact binaries, Miras and LPVs. Preliminary results suggest a very high ( ~95%) efficiency of SVM in isolating a few best defined classes against the rest of the sample, and good accuracy ( ~70-75%) for all classes considered simultaneously. This includes some degeneracies, irreducible with the information at hand. Supervised methods naturally outperform unsupervised methods, in terms of final error rate, but unsupervised methods offer many advantages for large sets of unlabeled data. Therefore, both types of methods should be considered as promising tools for mining vast variability surveys. We project that there are more than 30,000 periodic variables in the ROTSE-I data base covering the entire local sky between V=10 and 15.5 mag. This sample size is already stretching the time capabilities of human analysts.

Multilayer Extreme Learning Machine With Subnetwork Nodes for Representation Learning.

PubMed

Yang, Yimin; Wu, Q M Jonathan

2016-11-01

The extreme learning machine (ELM), which was originally proposed for "generalized" single-hidden layer feedforward neural networks, provides efficient unified learning solutions for the applications of clustering, regression, and classification. It presents competitive accuracy with superb efficiency in many applications. However, ELM with subnetwork nodes architecture has not attracted much research attentions. Recently, many methods have been proposed for supervised/unsupervised dimension reduction or representation learning, but these methods normally only work for one type of problem. This paper studies the general architecture of multilayer ELM (ML-ELM) with subnetwork nodes, showing that: 1) the proposed method provides a representation learning platform with unsupervised/supervised and compressed/sparse representation learning and 2) experimental results on ten image datasets and 16 classification datasets show that, compared to other conventional feature learning methods, the proposed ML-ELM with subnetwork nodes performs competitively or much better than other feature learning methods.

Training strategy for convolutional neural networks in pedestrian gender classification

NASA Astrophysics Data System (ADS)

Ng, Choon-Boon; Tay, Yong-Haur; Goi, Bok-Min

2017-06-01

In this work, we studied a strategy for training a convolutional neural network in pedestrian gender classification with limited amount of labeled training data. Unsupervised learning by k-means clustering on pedestrian images was used to learn the filters to initialize the first layer of the network. As a form of pre-training, supervised learning for the related task of pedestrian classification was performed. Finally, the network was fine-tuned for gender classification. We found that this strategy improved the network's generalization ability in gender classification, achieving better test results when compared to random weights initialization and slightly more beneficial than merely initializing the first layer filters by unsupervised learning. This shows that unsupervised learning followed by pre-training with pedestrian images is an effective strategy to learn useful features for pedestrian gender classification.

An information-based network approach for protein classification

PubMed Central

Wan, Xiaogeng; Zhao, Xin; Yau, Stephen S. T.

2017-01-01

Protein classification is one of the critical problems in bioinformatics. Early studies used geometric distances and polygenetic-tree to classify proteins. These methods use binary trees to present protein classification. In this paper, we propose a new protein classification method, whereby theories of information and networks are used to classify the multivariate relationships of proteins. In this study, protein universe is modeled as an undirected network, where proteins are classified according to their connections. Our method is unsupervised, multivariate, and alignment-free. It can be applied to the classification of both protein sequences and structures. Nine examples are used to demonstrate the efficiency of our new method. PMID:28350835

An unsupervised classification approach for analysis of Landsat data to monitor land reclamation in Belmont county, Ohio

NASA Technical Reports Server (NTRS)

Brumfield, J. O.; Bloemer, H. H. L.; Campbell, W. J.

1981-01-01

Two unsupervised classification procedures for analyzing Landsat data used to monitor land reclamation in a surface mining area in east central Ohio are compared for agreement with data collected from the corresponding locations on the ground. One procedure is based on a traditional unsupervised-clustering/maximum-likelihood algorithm sequence that assumes spectral groupings in the Landsat data in n-dimensional space; the other is based on a nontraditional unsupervised-clustering/canonical-transformation/clustering algorithm sequence that not only assumes spectral groupings in n-dimensional space but also includes an additional feature-extraction technique. It is found that the nontraditional procedure provides an appreciable improvement in spectral groupings and apparently increases the level of accuracy in the classification of land cover categories.

Unsupervised feature learning for autonomous rock image classification

NASA Astrophysics Data System (ADS)

Shu, Lei; McIsaac, Kenneth; Osinski, Gordon R.; Francis, Raymond

2017-09-01

Autonomous rock image classification can enhance the capability of robots for geological detection and enlarge the scientific returns, both in investigation on Earth and planetary surface exploration on Mars. Since rock textural images are usually inhomogeneous and manually hand-crafting features is not always reliable, we propose an unsupervised feature learning method to autonomously learn the feature representation for rock images. In our tests, rock image classification using the learned features shows that the learned features can outperform manually selected features. Self-taught learning is also proposed to learn the feature representation from a large database of unlabelled rock images of mixed class. The learned features can then be used repeatedly for classification of any subclass. This takes advantage of the large dataset of unlabelled rock images and learns a general feature representation for many kinds of rocks. We show experimental results supporting the feasibility of self-taught learning on rock images.

Unsupervised and self-mapping category formation and semantic object recognition for mobile robot vision used in an actual environment

NASA Astrophysics Data System (ADS)

Madokoro, H.; Tsukada, M.; Sato, K.

2013-07-01

This paper presents an unsupervised learning-based object category formation and recognition method for mobile robot vision. Our method has the following features: detection of feature points and description of features using a scale-invariant feature transform (SIFT), selection of target feature points using one class support vector machines (OC-SVMs), generation of visual words using self-organizing maps (SOMs), formation of labels using adaptive resonance theory 2 (ART-2), and creation and classification of categories on a category map of counter propagation networks (CPNs) for visualizing spatial relations between categories. Classification results of dynamic images using time-series images obtained using two different-size robots and according to movements respectively demonstrate that our method can visualize spatial relations of categories while maintaining time-series characteristics. Moreover, we emphasize the effectiveness of our method for category formation of appearance changes of objects.

Signature extension: An approach to operational multispectral surveys

NASA Technical Reports Server (NTRS)

Nalepka, R. F.; Morgenstern, J. P.

1973-01-01

Two data processing techniques were suggested as applicable to the large area survey problem. One approach was to use unsupervised classification (clustering) techniques. Investigation of this method showed that since the method did nothing to reduce the signal variability, the use of this method would be very time consuming and possibly inaccurate as well. The conclusion is that unsupervised classification techniques of themselves are not a solution to the large area survey problem. The other method investigated was the use of signature extension techniques. Such techniques function by normalizing the data to some reference condition. Thus signatures from an isolated area could be used to process large quantities of data. In this manner, ground information requirements and computer training are minimized. Several signature extension techniques were tested. The best of these allowed signatures to be extended between data sets collected four days and 80 miles apart with an average accuracy of better than 90%.

Learning from label proportions in brain-computer interfaces: Online unsupervised learning with guarantees.

PubMed

Hübner, David; Verhoeven, Thibault; Schmid, Konstantin; Müller, Klaus-Robert; Tangermann, Michael; Kindermans, Pieter-Jan

2017-01-01

Using traditional approaches, a brain-computer interface (BCI) requires the collection of calibration data for new subjects prior to online use. Calibration time can be reduced or eliminated e.g., by subject-to-subject transfer of a pre-trained classifier or unsupervised adaptive classification methods which learn from scratch and adapt over time. While such heuristics work well in practice, none of them can provide theoretical guarantees. Our objective is to modify an event-related potential (ERP) paradigm to work in unison with the machine learning decoder, and thus to achieve a reliable unsupervised calibrationless decoding with a guarantee to recover the true class means. We introduce learning from label proportions (LLP) to the BCI community as a new unsupervised, and easy-to-implement classification approach for ERP-based BCIs. The LLP estimates the mean target and non-target responses based on known proportions of these two classes in different groups of the data. We present a visual ERP speller to meet the requirements of LLP. For evaluation, we ran simulations on artificially created data sets and conducted an online BCI study with 13 subjects performing a copy-spelling task. Theoretical considerations show that LLP is guaranteed to minimize the loss function similar to a corresponding supervised classifier. LLP performed well in simulations and in the online application, where 84.5% of characters were spelled correctly on average without prior calibration. The continuously adapting LLP classifier is the first unsupervised decoder for ERP BCIs guaranteed to find the optimal decoder. This makes it an ideal solution to avoid tedious calibration sessions. Additionally, LLP works on complementary principles compared to existing unsupervised methods, opening the door for their further enhancement when combined with LLP.

Unsupervised classification of remote multispectral sensing data

NASA Technical Reports Server (NTRS)

Su, M. Y.

1972-01-01

The new unsupervised classification technique for classifying multispectral remote sensing data which can be either from the multispectral scanner or digitized color-separation aerial photographs consists of two parts: (a) a sequential statistical clustering which is a one-pass sequential variance analysis and (b) a generalized K-means clustering. In this composite clustering technique, the output of (a) is a set of initial clusters which are input to (b) for further improvement by an iterative scheme. Applications of the technique using an IBM-7094 computer on multispectral data sets over Purdue's Flight Line C-1 and the Yellowstone National Park test site have been accomplished. Comparisons between the classification maps by the unsupervised technique and the supervised maximum liklihood technique indicate that the classification accuracies are in agreement.

A Hybrid Supervised/Unsupervised Machine Learning Approach to Solar Flare Prediction

NASA Astrophysics Data System (ADS)

Benvenuto, Federico; Piana, Michele; Campi, Cristina; Massone, Anna Maria

2018-01-01

This paper introduces a novel method for flare forecasting, combining prediction accuracy with the ability to identify the most relevant predictive variables. This result is obtained by means of a two-step approach: first, a supervised regularization method for regression, namely, LASSO is applied, where a sparsity-enhancing penalty term allows the identification of the significance with which each data feature contributes to the prediction; then, an unsupervised fuzzy clustering technique for classification, namely, Fuzzy C-Means, is applied, where the regression outcome is partitioned through the minimization of a cost function and without focusing on the optimization of a specific skill score. This approach is therefore hybrid, since it combines supervised and unsupervised learning; realizes classification in an automatic, skill-score-independent way; and provides effective prediction performances even in the case of imbalanced data sets. Its prediction power is verified against NOAA Space Weather Prediction Center data, using as a test set, data in the range between 1996 August and 2010 December and as training set, data in the range between 1988 December and 1996 June. To validate the method, we computed several skill scores typically utilized in flare prediction and compared the values provided by the hybrid approach with the ones provided by several standard (non-hybrid) machine learning methods. The results showed that the hybrid approach performs classification better than all other supervised methods and with an effectiveness comparable to the one of clustering methods; but, in addition, it provides a reliable ranking of the weights with which the data properties contribute to the forecast.

Supervised versus unsupervised categorization: two sides of the same coin?

PubMed

Pothos, Emmanuel M; Edwards, Darren J; Perlman, Amotz

2011-09-01

Supervised and unsupervised categorization have been studied in separate research traditions. A handful of studies have attempted to explore a possible convergence between the two. The present research builds on these studies, by comparing the unsupervised categorization results of Pothos et al. ( 2011 ; Pothos et al., 2008 ) with the results from two procedures of supervised categorization. In two experiments, we tested 375 participants with nine different stimulus sets and examined the relation between ease of learning of a classification, memory for a classification, and spontaneous preference for a classification. After taking into account the role of the number of category labels (clusters) in supervised learning, we found the three variables to be closely associated with each other. Our results provide encouragement for researchers seeking unified theoretical explanations for supervised and unsupervised categorization, but raise a range of challenging theoretical questions.

A new local-global approach for classification.

PubMed

Peres, R T; Pedreira, C E

2010-09-01

In this paper, we propose a new local-global pattern classification scheme that combines supervised and unsupervised approaches, taking advantage of both, local and global environments. We understand as global methods the ones concerned with the aim of constructing a model for the whole problem space using the totality of the available observations. Local methods focus into sub regions of the space, possibly using an appropriately selected subset of the sample. In the proposed method, the sample is first divided in local cells by using a Vector Quantization unsupervised algorithm, the LBG (Linde-Buzo-Gray). In a second stage, the generated assemblage of much easier problems is locally solved with a scheme inspired by Bayes' rule. Four classification methods were implemented for comparison purposes with the proposed scheme: Learning Vector Quantization (LVQ); Feedforward Neural Networks; Support Vector Machine (SVM) and k-Nearest Neighbors. These four methods and the proposed scheme were implemented in eleven datasets, two controlled experiments, plus nine public available datasets from the UCI repository. The proposed method has shown a quite competitive performance when compared to these classical and largely used classifiers. Our method is simple concerning understanding and implementation and is based on very intuitive concepts. Copyright 2010 Elsevier Ltd. All rights reserved.

Supervised segmentation of microelectrode recording artifacts using power spectral density.

PubMed

Bakstein, Eduard; Schneider, Jakub; Sieger, Tomas; Novak, Daniel; Wild, Jiri; Jech, Robert

2015-08-01

Appropriate detection of clean signal segments in extracellular microelectrode recordings (MER) is vital for maintaining high signal-to-noise ratio in MER studies. Existing alternatives to manual signal inspection are based on unsupervised change-point detection. We present a method of supervised MER artifact classification, based on power spectral density (PSD) and evaluate its performance on a database of 95 labelled MER signals. The proposed method yielded test-set accuracy of 90%, which was close to the accuracy of annotation (94%). The unsupervised methods achieved accuracy of about 77% on both training and testing data.

Emotional textile image classification based on cross-domain convolutional sparse autoencoders with feature selection

NASA Astrophysics Data System (ADS)

Li, Zuhe; Fan, Yangyu; Liu, Weihua; Yu, Zeqi; Wang, Fengqin

2017-01-01

We aim to apply sparse autoencoder-based unsupervised feature learning to emotional semantic analysis for textile images. To tackle the problem of limited training data, we present a cross-domain feature learning scheme for emotional textile image classification using convolutional autoencoders. We further propose a correlation-analysis-based feature selection method for the weights learned by sparse autoencoders to reduce the number of features extracted from large size images. First, we randomly collect image patches on an unlabeled image dataset in the source domain and learn local features with a sparse autoencoder. We then conduct feature selection according to the correlation between different weight vectors corresponding to the autoencoder's hidden units. We finally adopt a convolutional neural network including a pooling layer to obtain global feature activations of textile images in the target domain and send these global feature vectors into logistic regression models for emotional image classification. The cross-domain unsupervised feature learning method achieves 65% to 78% average accuracy in the cross-validation experiments corresponding to eight emotional categories and performs better than conventional methods. Feature selection can reduce the computational cost of global feature extraction by about 50% while improving classification performance.

Classification of neocortical interneurons using affinity propagation.

PubMed

Santana, Roberto; McGarry, Laura M; Bielza, Concha; Larrañaga, Pedro; Yuste, Rafael

2013-01-01

In spite of over a century of research on cortical circuits, it is still unknown how many classes of cortical neurons exist. In fact, neuronal classification is a difficult problem because it is unclear how to designate a neuronal cell class and what are the best characteristics to define them. Recently, unsupervised classifications using cluster analysis based on morphological, physiological, or molecular characteristics, have provided quantitative and unbiased identification of distinct neuronal subtypes, when applied to selected datasets. However, better and more robust classification methods are needed for increasingly complex and larger datasets. Here, we explored the use of affinity propagation, a recently developed unsupervised classification algorithm imported from machine learning, which gives a representative example or exemplar for each cluster. As a case study, we applied affinity propagation to a test dataset of 337 interneurons belonging to four subtypes, previously identified based on morphological and physiological characteristics. We found that affinity propagation correctly classified most of the neurons in a blind, non-supervised manner. Affinity propagation outperformed Ward's method, a current standard clustering approach, in classifying the neurons into 4 subtypes. Affinity propagation could therefore be used in future studies to validly classify neurons, as a first step to help reverse engineer neural circuits.

Age and gender classification in the wild with unsupervised feature learning

NASA Astrophysics Data System (ADS)

Wan, Lihong; Huo, Hong; Fang, Tao

2017-03-01

Inspired by unsupervised feature learning (UFL) within the self-taught learning framework, we propose a method based on UFL, convolution representation, and part-based dimensionality reduction to handle facial age and gender classification, which are two challenging problems under unconstrained circumstances. First, UFL is introduced to learn selective receptive fields (filters) automatically by applying whitening transformation and spherical k-means on random patches collected from unlabeled data. The learning process is fast and has no hyperparameters to tune. Then, the input image is convolved with these filters to obtain filtering responses on which local contrast normalization is applied. Average pooling and feature concatenation are then used to form global face representation. Finally, linear discriminant analysis with part-based strategy is presented to reduce the dimensions of the global representation and to improve classification performances further. Experiments on three challenging databases, namely, Labeled faces in the wild, Gallagher group photos, and Adience, demonstrate the effectiveness of the proposed method relative to that of state-of-the-art approaches.

MARTA GANs: Unsupervised Representation Learning for Remote Sensing Image Classification

NASA Astrophysics Data System (ADS)

Lin, Daoyu; Fu, Kun; Wang, Yang; Xu, Guangluan; Sun, Xian

2017-11-01

With the development of deep learning, supervised learning has frequently been adopted to classify remotely sensed images using convolutional networks (CNNs). However, due to the limited amount of labeled data available, supervised learning is often difficult to carry out. Therefore, we proposed an unsupervised model called multiple-layer feature-matching generative adversarial networks (MARTA GANs) to learn a representation using only unlabeled data. MARTA GANs consists of both a generative model $G$ and a discriminative model $D$. We treat $D$ as a feature extractor. To fit the complex properties of remote sensing data, we use a fusion layer to merge the mid-level and global features. $G$ can produce numerous images that are similar to the training data; therefore, $D$ can learn better representations of remotely sensed images using the training data provided by $G$. The classification results on two widely used remote sensing image databases show that the proposed method significantly improves the classification performance compared with other state-of-the-art methods.

Hierarchical Gene Selection and Genetic Fuzzy System for Cancer Microarray Data Classification

PubMed Central

Nguyen, Thanh; Khosravi, Abbas; Creighton, Douglas; Nahavandi, Saeid

2015-01-01

This paper introduces a novel approach to gene selection based on a substantial modification of analytic hierarchy process (AHP). The modified AHP systematically integrates outcomes of individual filter methods to select the most informative genes for microarray classification. Five individual ranking methods including t-test, entropy, receiver operating characteristic (ROC) curve, Wilcoxon and signal to noise ratio are employed to rank genes. These ranked genes are then considered as inputs for the modified AHP. Additionally, a method that uses fuzzy standard additive model (FSAM) for cancer classification based on genes selected by AHP is also proposed in this paper. Traditional FSAM learning is a hybrid process comprising unsupervised structure learning and supervised parameter tuning. Genetic algorithm (GA) is incorporated in-between unsupervised and supervised training to optimize the number of fuzzy rules. The integration of GA enables FSAM to deal with the high-dimensional-low-sample nature of microarray data and thus enhance the efficiency of the classification. Experiments are carried out on numerous microarray datasets. Results demonstrate the performance dominance of the AHP-based gene selection against the single ranking methods. Furthermore, the combination of AHP-FSAM shows a great accuracy in microarray data classification compared to various competing classifiers. The proposed approach therefore is useful for medical practitioners and clinicians as a decision support system that can be implemented in the real medical practice. PMID:25823003

Hierarchical gene selection and genetic fuzzy system for cancer microarray data classification.

PubMed

Nguyen, Thanh; Khosravi, Abbas; Creighton, Douglas; Nahavandi, Saeid

2015-01-01

This paper introduces a novel approach to gene selection based on a substantial modification of analytic hierarchy process (AHP). The modified AHP systematically integrates outcomes of individual filter methods to select the most informative genes for microarray classification. Five individual ranking methods including t-test, entropy, receiver operating characteristic (ROC) curve, Wilcoxon and signal to noise ratio are employed to rank genes. These ranked genes are then considered as inputs for the modified AHP. Additionally, a method that uses fuzzy standard additive model (FSAM) for cancer classification based on genes selected by AHP is also proposed in this paper. Traditional FSAM learning is a hybrid process comprising unsupervised structure learning and supervised parameter tuning. Genetic algorithm (GA) is incorporated in-between unsupervised and supervised training to optimize the number of fuzzy rules. The integration of GA enables FSAM to deal with the high-dimensional-low-sample nature of microarray data and thus enhance the efficiency of the classification. Experiments are carried out on numerous microarray datasets. Results demonstrate the performance dominance of the AHP-based gene selection against the single ranking methods. Furthermore, the combination of AHP-FSAM shows a great accuracy in microarray data classification compared to various competing classifiers. The proposed approach therefore is useful for medical practitioners and clinicians as a decision support system that can be implemented in the real medical practice.

An unsupervised technique for optimal feature selection in attribute profiles for spectral-spatial classification of hyperspectral images

NASA Astrophysics Data System (ADS)

Bhardwaj, Kaushal; Patra, Swarnajyoti

2018-04-01

Inclusion of spatial information along with spectral features play a significant role in classification of remote sensing images. Attribute profiles have already proved their ability to represent spatial information. In order to incorporate proper spatial information, multiple attributes are required and for each attribute large profiles need to be constructed by varying the filter parameter values within a wide range. Thus, the constructed profiles that represent spectral-spatial information of an hyperspectral image have huge dimension which leads to Hughes phenomenon and increases computational burden. To mitigate these problems, this work presents an unsupervised feature selection technique that selects a subset of filtered image from the constructed high dimensional multi-attribute profile which are sufficiently informative to discriminate well among classes. In this regard the proposed technique exploits genetic algorithms (GAs). The fitness function of GAs are defined in an unsupervised way with the help of mutual information. The effectiveness of the proposed technique is assessed using one-against-all support vector machine classifier. The experiments conducted on three hyperspectral data sets show the robustness of the proposed method in terms of computation time and classification accuracy.

Maximum Margin Clustering of Hyperspectral Data

NASA Astrophysics Data System (ADS)

Niazmardi, S.; Safari, A.; Homayouni, S.

2013-09-01

In recent decades, large margin methods such as Support Vector Machines (SVMs) are supposed to be the state-of-the-art of supervised learning methods for classification of hyperspectral data. However, the results of these algorithms mainly depend on the quality and quantity of available training data. To tackle down the problems associated with the training data, the researcher put effort into extending the capability of large margin algorithms for unsupervised learning. One of the recent proposed algorithms is Maximum Margin Clustering (MMC). The MMC is an unsupervised SVMs algorithm that simultaneously estimates both the labels and the hyperplane parameters. Nevertheless, the optimization of the MMC algorithm is a non-convex problem. Most of the existing MMC methods rely on the reformulating and the relaxing of the non-convex optimization problem as semi-definite programs (SDP), which are computationally very expensive and only can handle small data sets. Moreover, most of these algorithms are two-class classification, which cannot be used for classification of remotely sensed data. In this paper, a new MMC algorithm is used that solve the original non-convex problem using Alternative Optimization method. This algorithm is also extended for multi-class classification and its performance is evaluated. The results of the proposed algorithm show that the algorithm has acceptable results for hyperspectral data clustering.

Unsupervised Feature Learning for Heart Sounds Classification Using Autoencoder

NASA Astrophysics Data System (ADS)

Hu, Wei; Lv, Jiancheng; Liu, Dongbo; Chen, Yao

2018-04-01

Cardiovascular disease seriously threatens the health of many people. It is usually diagnosed during cardiac auscultation, which is a fast and efficient method of cardiovascular disease diagnosis. In recent years, deep learning approach using unsupervised learning has made significant breakthroughs in many fields. However, to our knowledge, deep learning has not yet been used for heart sound classification. In this paper, we first use the average Shannon energy to extract the envelope of the heart sounds, then find the highest point of S1 to extract the cardiac cycle. We convert the time-domain signals of the cardiac cycle into spectrograms and apply principal component analysis whitening to reduce the dimensionality of the spectrogram. Finally, we apply a two-layer autoencoder to extract the features of the spectrogram. The experimental results demonstrate that the features from the autoencoder are suitable for heart sound classification.

Automated age-related macular degeneration classification in OCT using unsupervised feature learning

NASA Astrophysics Data System (ADS)

Venhuizen, Freerk G.; van Ginneken, Bram; Bloemen, Bart; van Grinsven, Mark J. J. P.; Philipsen, Rick; Hoyng, Carel; Theelen, Thomas; Sánchez, Clara I.

2015-03-01

Age-related Macular Degeneration (AMD) is a common eye disorder with high prevalence in elderly people. The disease mainly affects the central part of the retina, and could ultimately lead to permanent vision loss. Optical Coherence Tomography (OCT) is becoming the standard imaging modality in diagnosis of AMD and the assessment of its progression. However, the evaluation of the obtained volumetric scan is time consuming, expensive and the signs of early AMD are easy to miss. In this paper we propose a classification method to automatically distinguish AMD patients from healthy subjects with high accuracy. The method is based on an unsupervised feature learning approach, and processes the complete image without the need for an accurate pre-segmentation of the retina. The method can be divided in two steps: an unsupervised clustering stage that extracts a set of small descriptive image patches from the training data, and a supervised training stage that uses these patches to create a patch occurrence histogram for every image on which a random forest classifier is trained. Experiments using 384 volume scans show that the proposed method is capable of identifying AMD patients with high accuracy, obtaining an area under the Receiver Operating Curve of 0:984. Our method allows for a quick and reliable assessment of the presence of AMD pathology in OCT volume scans without the need for accurate layer segmentation algorithms.

Application of diffusion maps to identify human factors of self-reported anomalies in aviation.

PubMed

Andrzejczak, Chris; Karwowski, Waldemar; Mikusinski, Piotr

2012-01-01

A study investigating what factors are present leading to pilots submitting voluntary anomaly reports regarding their flight performance was conducted. Diffusion Maps (DM) were selected as the method of choice for performing dimensionality reduction on text records for this study. Diffusion Maps have seen successful use in other domains such as image classification and pattern recognition. High-dimensionality data in the form of narrative text reports from the NASA Aviation Safety Reporting System (ASRS) were clustered and categorized by way of dimensionality reduction. Supervised analyses were performed to create a baseline document clustering system. Dimensionality reduction techniques identified concepts or keywords within records, and allowed the creation of a framework for an unsupervised document classification system. Results from the unsupervised clustering algorithm performed similarly to the supervised methods outlined in the study. The dimensionality reduction was performed on 100 of the most commonly occurring words within 126,000 text records describing commercial aviation incidents. This study demonstrates that unsupervised machine clustering and organization of incident reports is possible based on unbiased inputs. Findings from this study reinforced traditional views on what factors contribute to civil aviation anomalies, however, new associations between previously unrelated factors and conditions were also found.

Hierarchical Adaptive Means (HAM) clustering for hardware-efficient, unsupervised and real-time spike sorting.

PubMed

Paraskevopoulou, Sivylla E; Wu, Di; Eftekhar, Amir; Constandinou, Timothy G

2014-09-30

This work presents a novel unsupervised algorithm for real-time adaptive clustering of neural spike data (spike sorting). The proposed Hierarchical Adaptive Means (HAM) clustering method combines centroid-based clustering with hierarchical cluster connectivity to classify incoming spikes using groups of clusters. It is described how the proposed method can adaptively track the incoming spike data without requiring any past history, iteration or training and autonomously determines the number of spike classes. Its performance (classification accuracy) has been tested using multiple datasets (both simulated and recorded) achieving a near-identical accuracy compared to k-means (using 10-iterations and provided with the number of spike classes). Also, its robustness in applying to different feature extraction methods has been demonstrated by achieving classification accuracies above 80% across multiple datasets. Last but crucially, its low complexity, that has been quantified through both memory and computation requirements makes this method hugely attractive for future hardware implementation. Copyright © 2014 Elsevier B.V. All rights reserved.

On the Implementation of a Land Cover Classification System for SAR Images Using Khoros

NASA Technical Reports Server (NTRS)

Medina Revera, Edwin J.; Espinosa, Ramon Vasquez

1997-01-01

The Synthetic Aperture Radar (SAR) sensor is widely used to record data about the ground under all atmospheric conditions. The SAR acquired images have very good resolution which necessitates the development of a classification system that process the SAR images to extract useful information for different applications. In this work, a complete system for the land cover classification was designed and programmed using the Khoros, a data flow visual language environment, taking full advantages of the polymorphic data services that it provides. Image analysis was applied to SAR images to improve and automate the processes of recognition and classification of the different regions like mountains and lakes. Both unsupervised and supervised classification utilities were used. The unsupervised classification routines included the use of several Classification/Clustering algorithms like the K-means, ISO2, Weighted Minimum Distance, and the Localized Receptive Field (LRF) training/classifier. Different texture analysis approaches such as Invariant Moments, Fractal Dimension and Second Order statistics were implemented for supervised classification of the images. The results and conclusions for SAR image classification using the various unsupervised and supervised procedures are presented based on their accuracy and performance.

Combining Unsupervised and Supervised Classification to Build User Models for Exploratory Learning Environments

ERIC Educational Resources Information Center

Amershi, Saleema; Conati, Cristina

2009-01-01

In this paper, we present a data-based user modeling framework that uses both unsupervised and supervised classification to build student models for exploratory learning environments. We apply the framework to build student models for two different learning environments and using two different data sources (logged interface and eye-tracking data).…

Generalized Wishart Mixtures for Unsupervised Classification of PolSAR Data

NASA Astrophysics Data System (ADS)

Li, Lan; Chen, Erxue; Li, Zengyuan

2013-01-01

This paper presents an unsupervised clustering algorithm based upon the expectation maximization (EM) algorithm for finite mixture modelling, using the complex wishart probability density function (PDF) for the probabilities. The mixture model enables to consider heterogeneous thematic classes which could not be better fitted by the unimodal wishart distribution. In order to make it fast and robust to calculate, we use the recently proposed generalized gamma distribution (GΓD) for the single polarization intensity data to make the initial partition. Then we use the wishart probability density function for the corresponding sample covariance matrix to calculate the posterior class probabilities for each pixel. The posterior class probabilities are used for the prior probability estimates of each class and weights for all class parameter updates. The proposed method is evaluated and compared with the wishart H-Alpha-A classification. Preliminary results show that the proposed method has better performance.

Detection of food intake from swallowing sequences by supervised and unsupervised methods.

PubMed

Lopez-Meyer, Paulo; Makeyev, Oleksandr; Schuckers, Stephanie; Melanson, Edward L; Neuman, Michael R; Sazonov, Edward

2010-08-01

Studies of food intake and ingestive behavior in free-living conditions most often rely on self-reporting-based methods that can be highly inaccurate. Methods of Monitoring of Ingestive Behavior (MIB) rely on objective measures derived from chewing and swallowing sequences and thus can be used for unbiased study of food intake with free-living conditions. Our previous study demonstrated accurate detection of food intake in simple models relying on observation of both chewing and swallowing. This article investigates methods that achieve comparable accuracy of food intake detection using only the time series of swallows and thus eliminating the need for the chewing sensor. The classification is performed for each individual swallow rather than for previously used time slices and thus will lead to higher accuracy in mass prediction models relying on counts of swallows. Performance of a group model based on a supervised method (SVM) is compared to performance of individual models based on an unsupervised method (K-means) with results indicating better performance of the unsupervised, self-adapting method. Overall, the results demonstrate that highly accurate detection of intake of foods with substantially different physical properties is possible by an unsupervised system that relies on the information provided by the swallowing alone.

Detection of Food Intake from Swallowing Sequences by Supervised and Unsupervised Methods

PubMed Central

Lopez-Meyer, Paulo; Makeyev, Oleksandr; Schuckers, Stephanie; Melanson, Edward L.; Neuman, Michael R.; Sazonov, Edward

2010-01-01

Studies of food intake and ingestive behavior in free-living conditions most often rely on self-reporting-based methods that can be highly inaccurate. Methods of Monitoring of Ingestive Behavior (MIB) rely on objective measures derived from chewing and swallowing sequences and thus can be used for unbiased study of food intake with free-living conditions. Our previous study demonstrated accurate detection of food intake in simple models relying on observation of both chewing and swallowing. This article investigates methods that achieve comparable accuracy of food intake detection using only the time series of swallows and thus eliminating the need for the chewing sensor. The classification is performed for each individual swallow rather than for previously used time slices and thus will lead to higher accuracy in mass prediction models relying on counts of swallows. Performance of a group model based on a supervised method (SVM) is compared to performance of individual models based on an unsupervised method (K-means) with results indicating better performance of the unsupervised, self-adapting method. Overall, the results demonstrate that highly accurate detection of intake of foods with substantially different physical properties is possible by an unsupervised system that relies on the information provided by the swallowing alone. PMID:20352335

Machine learning in APOGEE. Unsupervised spectral classification with K-means

NASA Astrophysics Data System (ADS)

Garcia-Dias, Rafael; Allende Prieto, Carlos; Sánchez Almeida, Jorge; Ordovás-Pascual, Ignacio

2018-05-01

Context. The volume of data generated by astronomical surveys is growing rapidly. Traditional analysis techniques in spectroscopy either demand intensive human interaction or are computationally expensive. In this scenario, machine learning, and unsupervised clustering algorithms in particular, offer interesting alternatives. The Apache Point Observatory Galactic Evolution Experiment (APOGEE) offers a vast data set of near-infrared stellar spectra, which is perfect for testing such alternatives. Aims: Our research applies an unsupervised classification scheme based on K-means to the massive APOGEE data set. We explore whether the data are amenable to classification into discrete classes. Methods: We apply the K-means algorithm to 153 847 high resolution spectra (R ≈ 22 500). We discuss the main virtues and weaknesses of the algorithm, as well as our choice of parameters. Results: We show that a classification based on normalised spectra captures the variations in stellar atmospheric parameters, chemical abundances, and rotational velocity, among other factors. The algorithm is able to separate the bulge and halo populations, and distinguish dwarfs, sub-giants, RC, and RGB stars. However, a discrete classification in flux space does not result in a neat organisation in the parameters' space. Furthermore, the lack of obvious groups in flux space causes the results to be fairly sensitive to the initialisation, and disrupts the efficiency of commonly-used methods to select the optimal number of clusters. Our classification is publicly available, including extensive online material associated with the APOGEE Data Release 12 (DR12). Conclusions: Our description of the APOGEE database can help greatly with the identification of specific types of targets for various applications. We find a lack of obvious groups in flux space, and identify limitations of the K-means algorithm in dealing with this kind of data. Full Tables B.1-B.4 are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/612/A98

A semi-supervised classification algorithm using the TAD-derived background as training data

NASA Astrophysics Data System (ADS)

Fan, Lei; Ambeau, Brittany; Messinger, David W.

2013-05-01

In general, spectral image classification algorithms fall into one of two categories: supervised and unsupervised. In unsupervised approaches, the algorithm automatically identifies clusters in the data without a priori information about those clusters (except perhaps the expected number of them). Supervised approaches require an analyst to identify training data to learn the characteristics of the clusters such that they can then classify all other pixels into one of the pre-defined groups. The classification algorithm presented here is a semi-supervised approach based on the Topological Anomaly Detection (TAD) algorithm. The TAD algorithm defines background components based on a mutual k-Nearest Neighbor graph model of the data, along with a spectral connected components analysis. Here, the largest components produced by TAD are used as regions of interest (ROI's),or training data for a supervised classification scheme. By combining those ROI's with a Gaussian Maximum Likelihood (GML) or a Minimum Distance to the Mean (MDM) algorithm, we are able to achieve a semi supervised classification method. We test this classification algorithm against data collected by the HyMAP sensor over the Cooke City, MT area and University of Pavia scene.

Change classification in SAR time series: a functional approach

NASA Astrophysics Data System (ADS)

Boldt, Markus; Thiele, Antje; Schulz, Karsten; Hinz, Stefan

2017-10-01

Change detection represents a broad field of research in SAR remote sensing, consisting of many different approaches. Besides the simple recognition of change areas, the analysis of type, category or class of the change areas is at least as important for creating a comprehensive result. Conventional strategies for change classification are based on supervised or unsupervised landuse / landcover classifications. The main drawback of such approaches is that the quality of the classification result directly depends on the selection of training and reference data. Additionally, supervised processing methods require an experienced operator who capably selects the training samples. This training step is not necessary when using unsupervised strategies, but nevertheless meaningful reference data must be available for identifying the resulting classes. Consequently, an experienced operator is indispensable. In this study, an innovative concept for the classification of changes in SAR time series data is proposed. Regarding the drawbacks of traditional strategies given above, it copes without using any training data. Moreover, the method can be applied by an operator, who does not have detailed knowledge about the available scenery yet. This knowledge is provided by the algorithm. The final step of the procedure, which main aspect is given by the iterative optimization of an initial class scheme with respect to the categorized change objects, is represented by the classification of these objects to the finally resulting classes. This assignment step is subject of this paper.

Automated classification of dolphin echolocation click types from the Gulf of Mexico.

PubMed

Frasier, Kaitlin E; Roch, Marie A; Soldevilla, Melissa S; Wiggins, Sean M; Garrison, Lance P; Hildebrand, John A

2017-12-01

Delphinids produce large numbers of short duration, broadband echolocation clicks which may be useful for species classification in passive acoustic monitoring efforts. A challenge in echolocation click classification is to overcome the many sources of variability to recognize underlying patterns across many detections. An automated unsupervised network-based classification method was developed to simulate the approach a human analyst uses when categorizing click types: Clusters of similar clicks were identified by incorporating multiple click characteristics (spectral shape and inter-click interval distributions) to distinguish within-type from between-type variation, and identify distinct, persistent click types. Once click types were established, an algorithm for classifying novel detections using existing clusters was tested. The automated classification method was applied to a dataset of 52 million clicks detected across five monitoring sites over two years in the Gulf of Mexico (GOM). Seven distinct click types were identified, one of which is known to be associated with an acoustically identifiable delphinid (Risso's dolphin) and six of which are not yet identified. All types occurred at multiple monitoring locations, but the relative occurrence of types varied, particularly between continental shelf and slope locations. Automatically-identified click types from autonomous seafloor recorders without verifiable species identification were compared with clicks detected on sea-surface towed hydrophone arrays in the presence of visually identified delphinid species. These comparisons suggest potential species identities for the animals producing some echolocation click types. The network-based classification method presented here is effective for rapid, unsupervised delphinid click classification across large datasets in which the click types may not be known a priori.

Automated classification of dolphin echolocation click types from the Gulf of Mexico

PubMed Central

Roch, Marie A.; Soldevilla, Melissa S.; Wiggins, Sean M.; Garrison, Lance P.; Hildebrand, John A.

2017-01-01

Delphinids produce large numbers of short duration, broadband echolocation clicks which may be useful for species classification in passive acoustic monitoring efforts. A challenge in echolocation click classification is to overcome the many sources of variability to recognize underlying patterns across many detections. An automated unsupervised network-based classification method was developed to simulate the approach a human analyst uses when categorizing click types: Clusters of similar clicks were identified by incorporating multiple click characteristics (spectral shape and inter-click interval distributions) to distinguish within-type from between-type variation, and identify distinct, persistent click types. Once click types were established, an algorithm for classifying novel detections using existing clusters was tested. The automated classification method was applied to a dataset of 52 million clicks detected across five monitoring sites over two years in the Gulf of Mexico (GOM). Seven distinct click types were identified, one of which is known to be associated with an acoustically identifiable delphinid (Risso’s dolphin) and six of which are not yet identified. All types occurred at multiple monitoring locations, but the relative occurrence of types varied, particularly between continental shelf and slope locations. Automatically-identified click types from autonomous seafloor recorders without verifiable species identification were compared with clicks detected on sea-surface towed hydrophone arrays in the presence of visually identified delphinid species. These comparisons suggest potential species identities for the animals producing some echolocation click types. The network-based classification method presented here is effective for rapid, unsupervised delphinid click classification across large datasets in which the click types may not be known a priori. PMID:29216184

Classification and analysis of the Rudaki's Area

NASA Astrophysics Data System (ADS)

Zambon, F.; De sanctis, M.; Capaccioni, F.; Filacchione, G.; Carli, C.; Ammannito, E.; Frigeri, A.

2011-12-01

During the first two MESSENGER flybys the Mercury Dual Imaging System (MDIS) has mapped 90% of the Mercury's surface. An effective way to study the different terrain on planetary surfaces is to apply classification methods. These are based on clustering algorithms and they can be divided in two categories: unsupervised and supervised. The unsupervised classifiers do not require the analyst feedback and the algorithm automatically organizes pixels values into classes. In the supervised method, instead, the analyst must choose the "training area" that define the pixels value of a given class. We applied an unsupervised classifier, ISODATA, to the WAC filter images of the Rudaki's area where several kind of terrain have been identified showing differences in albedo, topography and crater density. ISODATA classifier divides this region in four classes: 1) shadow regions, 2) rough regions, 3) smooth plane, 4) highest reflectance area. ISODATA can not distinguish the high albedo regions from highly reflective illuminated edge of the craters, however the algorithm identify four classes that can be considered different units mainly on the basis of their reflectances at the various wavelengths. Is not possible, instead, to extrapolate compositional information because of the absence of clear spectral features. An additional analysis was made using ISODATA to choose the "training area" for further supervised classifications. These approach would allow, for example, to separate more accurately the edge of the craters from the high reflectance areas and the low reflectance regions from the shadow areas.

Classification of high-resolution multi-swath hyperspectral data using Landsat 8 surface reflectance data as a calibration target and a novel histogram based unsupervised classification technique to determine natural classes from biophysically relevant fit parameters

NASA Astrophysics Data System (ADS)

McCann, C.; Repasky, K. S.; Morin, M.; Lawrence, R. L.; Powell, S. L.

2016-12-01

Compact, cost-effective, flight-based hyperspectral imaging systems can provide scientifically relevant data over large areas for a variety of applications such as ecosystem studies, precision agriculture, and land management. To fully realize this capability, unsupervised classification techniques based on radiometrically-calibrated data that cluster based on biophysical similarity rather than simply spectral similarity are needed. An automated technique to produce high-resolution, large-area, radiometrically-calibrated hyperspectral data sets based on the Landsat surface reflectance data product as a calibration target was developed and applied to three subsequent years of data covering approximately 1850 hectares. The radiometrically-calibrated data allows inter-comparison of the temporal series. Advantages of the radiometric calibration technique include the need for minimal site access, no ancillary instrumentation, and automated processing. Fitting the reflectance spectra of each pixel using a set of biophysically relevant basis functions reduces the data from 80 spectral bands to 9 parameters providing noise reduction and data compression. Examination of histograms of these parameters allows for determination of natural splitting into biophysical similar clusters. This method creates clusters that are similar in terms of biophysical parameters, not simply spectral proximity. Furthermore, this method can be applied to other data sets, such as urban scenes, by developing other physically meaningful basis functions. The ability to use hyperspectral imaging for a variety of important applications requires the development of data processing techniques that can be automated. The radiometric-calibration combined with the histogram based unsupervised classification technique presented here provide one potential avenue for managing big-data associated with hyperspectral imaging.

Comparison Between Supervised and Unsupervised Classifications of Neuronal Cell Types: A Case Study

PubMed Central

Guerra, Luis; McGarry, Laura M; Robles, Víctor; Bielza, Concha; Larrañaga, Pedro; Yuste, Rafael

2011-01-01

In the study of neural circuits, it becomes essential to discern the different neuronal cell types that build the circuit. Traditionally, neuronal cell types have been classified using qualitative descriptors. More recently, several attempts have been made to classify neurons quantitatively, using unsupervised clustering methods. While useful, these algorithms do not take advantage of previous information known to the investigator, which could improve the classification task. For neocortical GABAergic interneurons, the problem to discern among different cell types is particularly difficult and better methods are needed to perform objective classifications. Here we explore the use of supervised classification algorithms to classify neurons based on their morphological features, using a database of 128 pyramidal cells and 199 interneurons from mouse neocortex. To evaluate the performance of different algorithms we used, as a “benchmark,” the test to automatically distinguish between pyramidal cells and interneurons, defining “ground truth” by the presence or absence of an apical dendrite. We compared hierarchical clustering with a battery of different supervised classification algorithms, finding that supervised classifications outperformed hierarchical clustering. In addition, the selection of subsets of distinguishing features enhanced the classification accuracy for both sets of algorithms. The analysis of selected variables indicates that dendritic features were most useful to distinguish pyramidal cells from interneurons when compared with somatic and axonal morphological variables. We conclude that supervised classification algorithms are better matched to the general problem of distinguishing neuronal cell types when some information on these cell groups, in our case being pyramidal or interneuron, is known a priori. As a spin-off of this methodological study, we provide several methods to automatically distinguish neocortical pyramidal cells from interneurons, based on their morphologies. © 2010 Wiley Periodicals, Inc. Develop Neurobiol 71: 71–82, 2011 PMID:21154911

Unsupervised universal steganalyzer for high-dimensional steganalytic features

NASA Astrophysics Data System (ADS)

Hou, Xiaodan; Zhang, Tao

2016-11-01

The research in developing steganalytic features has been highly successful. These features are extremely powerful when applied to supervised binary classification problems. However, they are incompatible with unsupervised universal steganalysis because the unsupervised method cannot distinguish embedding distortion from varying levels of noises caused by cover variation. This study attempts to alleviate the problem by introducing similarity retrieval of image statistical properties (SRISP), with the specific aim of mitigating the effect of cover variation on the existing steganalytic features. First, cover images with some statistical properties similar to those of a given test image are searched from a retrieval cover database to establish an aided sample set. Then, unsupervised outlier detection is performed on a test set composed of the given test image and its aided sample set to determine the type (cover or stego) of the given test image. Our proposed framework, called SRISP-aided unsupervised outlier detection, requires no training. Thus, it does not suffer from model mismatch mess. Compared with prior unsupervised outlier detectors that do not consider SRISP, the proposed framework not only retains the universality but also exhibits superior performance when applied to high-dimensional steganalytic features.

Towards a robust framework for catchment classification

NASA Astrophysics Data System (ADS)

Deshmukh, A.; Samal, A.; Singh, R.

2017-12-01

Classification of catchments based on various measures of similarity has emerged as an important technique to understand regional scale hydrologic behavior. Classification of catchment characteristics and/or streamflow response has been used reveal which characteristics are more likely to explain the observed variability of hydrologic response. However, numerous algorithms for supervised or unsupervised classification are available, making it hard to identify the algorithm most suitable for the dataset at hand. Consequently, existing catchment classification studies vary significantly in the classification algorithms employed with no previous attempt at understanding the degree of uncertainty in classification due to this algorithmic choice. This hinders the generalizability of interpretations related to hydrologic behavior. Our goal is to develop a protocol that can be followed while classifying hydrologic datasets. We focus on a classification framework for unsupervised classification and provide a step-by-step classification procedure. The steps include testing the clusterabiltiy of original dataset prior to classification, feature selection, validation of clustered data, and quantification of similarity of two clusterings. We test several commonly available methods within this framework to understand the level of similarity of classification results across algorithms. We apply the proposed framework on recently developed datasets for India to analyze to what extent catchment properties can explain observed catchment response. Our testing dataset includes watershed characteristics for over 200 watersheds which comprise of both natural (physio-climatic) characteristics and socio-economic characteristics. This framework allows us to understand the controls on observed hydrologic variability across India.

Incrementally learning objects by touch: online discriminative and generative models for tactile-based recognition.

PubMed

Soh, Harold; Demiris, Yiannis

2014-01-01

Human beings not only possess the remarkable ability to distinguish objects through tactile feedback but are further able to improve upon recognition competence through experience. In this work, we explore tactile-based object recognition with learners capable of incremental learning. Using the sparse online infinite Echo-State Gaussian process (OIESGP), we propose and compare two novel discriminative and generative tactile learners that produce probability distributions over objects during object grasping/palpation. To enable iterative improvement, our online methods incorporate training samples as they become available. We also describe incremental unsupervised learning mechanisms, based on novelty scores and extreme value theory, when teacher labels are not available. We present experimental results for both supervised and unsupervised learning tasks using the iCub humanoid, with tactile sensors on its five-fingered anthropomorphic hand, and 10 different object classes. Our classifiers perform comparably to state-of-the-art methods (C4.5 and SVM classifiers) and findings indicate that tactile signals are highly relevant for making accurate object classifications. We also show that accurate "early" classifications are possible using only 20-30 percent of the grasp sequence. For unsupervised learning, our methods generate high quality clusterings relative to the widely-used sequential k-means and self-organising map (SOM), and we present analyses into the differences between the approaches.

Cluster Method Analysis of K. S. C. Image

NASA Technical Reports Server (NTRS)

Rodriguez, Joe, Jr.; Desai, M.

1997-01-01

Information obtained from satellite-based systems has moved to the forefront as a method in the identification of many land cover types. Identification of different land features through remote sensing is an effective tool for regional and global assessment of geometric characteristics. Classification data acquired from remote sensing images have a wide variety of applications. In particular, analysis of remote sensing images have special applications in the classification of various types of vegetation. Results obtained from classification studies of a particular area or region serve towards a greater understanding of what parameters (ecological, temporal, etc.) affect the region being analyzed. In this paper, we make a distinction between both types of classification approaches although, focus is given to the unsupervised classification method using 1987 Thematic Mapped (TM) images of Kennedy Space Center.

Massively parallel unsupervised single-particle cryo-EM data clustering via statistical manifold learning

PubMed Central

Wu, Jiayi; Ma, Yong-Bei; Congdon, Charles; Brett, Bevin; Chen, Shuobing; Xu, Yaofang; Ouyang, Qi

2017-01-01

Structural heterogeneity in single-particle cryo-electron microscopy (cryo-EM) data represents a major challenge for high-resolution structure determination. Unsupervised classification may serve as the first step in the assessment of structural heterogeneity. However, traditional algorithms for unsupervised classification, such as K-means clustering and maximum likelihood optimization, may classify images into wrong classes with decreasing signal-to-noise-ratio (SNR) in the image data, yet demand increased computational costs. Overcoming these limitations requires further development of clustering algorithms for high-performance cryo-EM data processing. Here we introduce an unsupervised single-particle clustering algorithm derived from a statistical manifold learning framework called generative topographic mapping (GTM). We show that unsupervised GTM clustering improves classification accuracy by about 40% in the absence of input references for data with lower SNRs. Applications to several experimental datasets suggest that our algorithm can detect subtle structural differences among classes via a hierarchical clustering strategy. After code optimization over a high-performance computing (HPC) environment, our software implementation was able to generate thousands of reference-free class averages within hours in a massively parallel fashion, which allows a significant improvement on ab initio 3D reconstruction and assists in the computational purification of homogeneous datasets for high-resolution visualization. PMID:28786986

Massively parallel unsupervised single-particle cryo-EM data clustering via statistical manifold learning.

PubMed

Wu, Jiayi; Ma, Yong-Bei; Congdon, Charles; Brett, Bevin; Chen, Shuobing; Xu, Yaofang; Ouyang, Qi; Mao, Youdong

2017-01-01

Structural heterogeneity in single-particle cryo-electron microscopy (cryo-EM) data represents a major challenge for high-resolution structure determination. Unsupervised classification may serve as the first step in the assessment of structural heterogeneity. However, traditional algorithms for unsupervised classification, such as K-means clustering and maximum likelihood optimization, may classify images into wrong classes with decreasing signal-to-noise-ratio (SNR) in the image data, yet demand increased computational costs. Overcoming these limitations requires further development of clustering algorithms for high-performance cryo-EM data processing. Here we introduce an unsupervised single-particle clustering algorithm derived from a statistical manifold learning framework called generative topographic mapping (GTM). We show that unsupervised GTM clustering improves classification accuracy by about 40% in the absence of input references for data with lower SNRs. Applications to several experimental datasets suggest that our algorithm can detect subtle structural differences among classes via a hierarchical clustering strategy. After code optimization over a high-performance computing (HPC) environment, our software implementation was able to generate thousands of reference-free class averages within hours in a massively parallel fashion, which allows a significant improvement on ab initio 3D reconstruction and assists in the computational purification of homogeneous datasets for high-resolution visualization.

Land cover classification in multispectral imagery using clustering of sparse approximations over learned feature dictionaries

DOE PAGES

Moody, Daniela I.; Brumby, Steven P.; Rowland, Joel C.; ...

2014-12-09

We present results from an ongoing effort to extend neuromimetic machine vision algorithms to multispectral data using adaptive signal processing combined with compressive sensing and machine learning techniques. Our goal is to develop a robust classification methodology that will allow for automated discretization of the landscape into distinct units based on attributes such as vegetation, surface hydrological properties, and topographic/geomorphic characteristics. We use a Hebbian learning rule to build spectral-textural dictionaries that are tailored for classification. We learn our dictionaries from millions of overlapping multispectral image patches and then use a pursuit search to generate classification features. Land cover labelsmore » are automatically generated using unsupervised clustering of sparse approximations (CoSA). We demonstrate our method on multispectral WorldView-2 data from a coastal plain ecosystem in Barrow, Alaska. We explore learning from both raw multispectral imagery and normalized band difference indices. We explore a quantitative metric to evaluate the spectral properties of the clusters in order to potentially aid in assigning land cover categories to the cluster labels. In this study, our results suggest CoSA is a promising approach to unsupervised land cover classification in high-resolution satellite imagery.« less

Classification of damage in structural systems using time series analysis and supervised and unsupervised pattern recognition techniques

NASA Astrophysics Data System (ADS)

Omenzetter, Piotr; de Lautour, Oliver R.

2010-04-01

Developed for studying long, periodic records of various measured quantities, time series analysis methods are inherently suited and offer interesting possibilities for Structural Health Monitoring (SHM) applications. However, their use in SHM can still be regarded as an emerging application and deserves more studies. In this research, Autoregressive (AR) models were used to fit experimental acceleration time histories from two experimental structural systems, a 3- storey bookshelf-type laboratory structure and the ASCE Phase II SHM Benchmark Structure, in healthy and several damaged states. The coefficients of the AR models were chosen as damage sensitive features. Preliminary visual inspection of the large, multidimensional sets of AR coefficients to check the presence of clusters corresponding to different damage severities was achieved using Sammon mapping - an efficient nonlinear data compression technique. Systematic classification of damage into states based on the analysis of the AR coefficients was achieved using two supervised classification techniques: Nearest Neighbor Classification (NNC) and Learning Vector Quantization (LVQ), and one unsupervised technique: Self-organizing Maps (SOM). This paper discusses the performance of AR coefficients as damage sensitive features and compares the efficiency of the three classification techniques using experimental data.

A comparison of unsupervised classification procedures on LANDSAT MSS data for an area of complex surface conditions in Basilicata, Southern Italy

NASA Technical Reports Server (NTRS)

Justice, C.; Townshend, J. (Principal Investigator)

1981-01-01

Two unsupervised classification procedures were applied to ratioed and unratioed LANDSAT multispectral scanner data of an area of spatially complex vegetation and terrain. An objective accuracy assessment was undertaken on each classification and comparison was made of the classification accuracies. The two unsupervised procedures use the same clustering algorithm. By on procedure the entire area is clustered and by the other a representative sample of the area is clustered and the resulting statistics are extrapolated to the remaining area using a maximum likelihood classifier. Explanation is given of the major steps in the classification procedures including image preprocessing; classification; interpretation of cluster classes; and accuracy assessment. Of the four classifications undertaken, the monocluster block approach on the unratioed data gave the highest accuracy of 80% for five coarse cover classes. This accuracy was increased to 84% by applying a 3 x 3 contextual filter to the classified image. A detailed description and partial explanation is provided for the major misclassification. The classification of the unratioed data produced higher percentage accuracies than for the ratioed data and the monocluster block approach gave higher accuracies than clustering the entire area. The moncluster block approach was additionally the most economical in terms of computing time.

Application of classification methods for mapping Mercury's surface composition: analysis on Rudaki's Area

NASA Astrophysics Data System (ADS)

Zambon, F.; De Sanctis, M. C.; Capaccioni, F.; Filacchione, G.; Carli, C.; Ammanito, E.; Friggeri, A.

2011-10-01

During the first two MESSENGER flybys (14th January 2008 and 6th October 2008) the Mercury Dual Imaging System (MDIS) has extended the coverage of the Mercury surface, obtained by Mariner 10 and now we have images of about 90% of the Mercury surface [1]. MDIS is equipped with a Narrow Angle Camera (NAC) and a Wide Angle Camera (WAC). The NAC uses an off-axis reflective design with a 1.5° field of view (FOV) centered at 747 nm. The WAC has a re- fractive design with a 10.5° FOV and 12-position filters that cover a 395-1040 nm spectral range [2]. The color images can be used to infer information on the surface composition and classification meth- ods are an interesting technique for multispectral image analysis which can be applied to the study of the planetary surfaces. Classification methods are based on clustering algorithms and they can be divided in two categories: unsupervised and supervised. The unsupervised classifiers do not require the analyst feedback, and the algorithm automatically organizes pixels values into classes. In the supervised method, instead, the analyst must choose the "training area" that define the pixels value of a given class [3]. Here we will describe the classification in different compositional units of the region near the Rudaki Crater on Mercury.

LANDSAT landcover information applied to regional planning decisions. [Prince Edward County, Virginia

NASA Technical Reports Server (NTRS)

Dixon, C. M.

1981-01-01

Land cover information derived from LANDSAT is being utilized by Piedmont Planning District Commission located in the State of Virginia. Progress to date is reported on a level one land cover classification map being produced with nine categories. The nine categories of classification are defined. The computer compatible tape selection is presented. Two unsupervised classifications were done, with 50 and 70 classes respectively. Twenty-eight spectral classes were developed using the supervised technique, employing actual ground truth training sites. The accuracy of the unsupervised classifications are estimated through comparison with local county statistics and with an actual pixel count of LANDSAT information compared to ground truth.

Comparison Between Spectral, Spatial and Polarimetric Classification of Urban and Periurban Landcover Using Temporal Sentinel - 1 Images

NASA Astrophysics Data System (ADS)

Roychowdhury, K.

2016-06-01

Landcover is the easiest detectable indicator of human interventions on land. Urban and peri-urban areas present a complex combination of landcover, which makes classification challenging. This paper assesses the different methods of classifying landcover using dual polarimetric Sentinel-1 data collected during monsoon (July) and winter (December) months of 2015. Four broad landcover classes such as built up areas, water bodies and wetlands, vegetation and open spaces of Kolkata and its surrounding regions were identified. Polarimetric analyses were conducted on Single Look Complex (SLC) data of the region while ground range detected (GRD) data were used for spectral and spatial classification. Unsupervised classification by means of K-Means clustering used backscatter values and was able to identify homogenous landcovers over the study area. The results produced an overall accuracy of less than 50% for both the seasons. Higher classification accuracy (around 70%) was achieved by adding texture variables as inputs along with the backscatter values. However, the accuracy of classification increased significantly with polarimetric analyses. The overall accuracy was around 80% in Wishart H-A-Alpha unsupervised classification. The method was useful in identifying urban areas due to their double-bounce scattering and vegetated areas, which have more random scattering. Normalized Difference Built-up index (NDBI) and Normalized Difference Vegetation Index (NDVI) obtained from Landsat 8 data over the study area were used to verify vegetation and urban classes. The study compares the accuracies of different methods of classifying landcover using medium resolution SAR data in a complex urban area and suggests that polarimetric analyses present the most accurate results for urban and suburban areas.

VHR satellite multitemporal data to extract cultural landscape changes in the roman site of Grumentum

NASA Astrophysics Data System (ADS)

masini, nicola; Lasaponara, Rosa

2013-04-01

The papers deals with the use of VHR satellite multitemporal data set to extract cultural landscape changes in the roman site of Grumentum Grumentum is an ancient town, 50 km south of Potenza, located near the roman road of Via Herculea which connected the Venusia, in the north est of Basilicata, with Heraclea in the Ionian coast. The first settlement date back to the 6th century BC. It was resettled by the Romans in the 3rd century BC. Its urban fabric which evidences a long history from the Republican age to late Antiquity (III BC-V AD) is composed of the typical urban pattern of cardi and decumani. Its excavated ruins include a large amphitheatre, a theatre, the thermae, the Forum and some temples. There are many techniques nowadays available to capture and record differences in two or more images. In this paper we focus and apply the two main approaches which can be distinguished into : (i) unsupervised and (ii) supervised change detection methods. Unsupervised change detection methods are generally based on the transformation of the two multispectral images in to a single band or multiband image which are further analyzed to identify changes Unsupervised change detection techniques are generally based on three basic steps (i) the preprocessing step, (ii) a pixel-by-pixel comparison is performed, (iii). Identification of changes according to the magnitude an direction (positive /negative). Unsupervised change detection are generally based on the transformation of the two multispectral images into a single band or multiband image which are further analyzed to identify changes. Than the separation between changed and unchanged classes is obtained from the magnitude of the resulting spectral change vectors by means of empirical or theoretical well founded approaches Supervised change detection methods are generally based on supervised classification methods, which require the availability of a suitable training set for the learning process of the classifiers. Unsupervised change detection techniques are generally based on three basic steps (i) the preprocessing step, (ii) supervised classification is performed on the single dates or on the map obtained as the difference of two dates, (iii). Identification of changes according to the magnitude an direction (positive /negative). Supervised change detection are generally based on supervised classification methods, which require the availability of a suitable training set for the learning process of the classifiers, therefore these algorithms require a preliminary knowledge necessary: (i) to generate representative parameters for each class of interest; and (ii) to carry out the training stage Advantages and disadvantages of the supervised and unsupervised approaches are discuss. Finally results from the the satellite multitemporal dataset was also integrated with aerial photos from historical archive in order to expand the time window of the investigation and capture landscape changes occurred from the Agrarian Reform, in the 50s, up today.

Analysis On Land Cover In Municipality Of Malang With Landsat 8 Image Through Unsupervised Classification

NASA Astrophysics Data System (ADS)

Nahari, R. V.; Alfita, R.

2018-01-01

Remote sensing technology has been widely used in the geographic information system in order to obtain data more quickly, accurately and affordably. One of the advantages of using remote sensing imagery (satellite imagery) is to analyze land cover and land use. Satellite image data used in this study were images from the Landsat 8 satellite combined with the data from the Municipality of Malang government. The satellite image was taken in July 2016. Furthermore, the method used in this study was unsupervised classification. Based on the analysis towards the satellite images and field observations, 29% of the land in the Municipality of Malang was plantation, 22% of the area was rice field, 12% was residential area, 10% was land with shrubs, and the remaining 2% was water (lake/reservoir). The shortcoming of the methods was 25% of the land in the area was unidentified because it was covered by cloud. It is expected that future researchers involve cloud removal processing to minimize unidentified area.

Hierarchical classification method and its application in shape representation

NASA Astrophysics Data System (ADS)

Ireton, M. A.; Oakley, John P.; Xydeas, Costas S.

1992-04-01

In this paper we describe a technique for performing shaped-based content retrieval of images from a large database. In order to be able to formulate such user-generated queries about visual objects, we have developed an hierarchical classification technique. This hierarchical classification technique enables similarity matching between objects, with the position in the hierarchy signifying the level of generality to be used in the query. The classification technique is unsupervised, robust, and general; it can be applied to any suitable parameter set. To establish the potential of this classifier for aiding visual querying, we have applied it to the classification of the 2-D outlines of leaves.

A new tool for post-AGB SED classification

NASA Astrophysics Data System (ADS)

Bendjoya, P.; Suarez, O.; Galluccio, L.; Michel, O.

We present the results of an unsupervised classification method applied on a set of 344 spectral energy distributions (SED) of post-AGB stars extracted from the Torun catalogue of Galactic post-AGB stars. This method aims to find a new unbiased method for post-AGB star classification based on the information contained in the IR region of the SED (fluxes, IR excess, colours). We used the data from IRAS and MSX satellites, and from the 2MASS survey. We applied a classification method based on the construction of the dataset of a minimal spanning tree (MST) with the Prim's algorithm. In order to build this tree, different metrics have been tested on both flux and color indices. Our method is able to classify the set of 344 post-AGB stars in 9 distinct groups according to their SEDs.

Unsupervised classification of surface defects in wire rod production obtained by eddy current sensors.

PubMed

Saludes-Rodil, Sergio; Baeyens, Enrique; Rodríguez-Juan, Carlos P

2015-04-29

An unsupervised approach to classify surface defects in wire rod manufacturing is developed in this paper. The defects are extracted from an eddy current signal and classified using a clustering technique that uses the dynamic time warping distance as the dissimilarity measure. The new approach has been successfully tested using industrial data. It is shown that it outperforms other classification alternatives, such as the modified Fourier descriptors.

Employing broadband spectra and cluster analysis to assess thermal defoliation of cotton

USDA-ARS?s Scientific Manuscript database

Growers and field scouts need assistance in surveying cotton (Gossypium hirsutum L.) fields subjected to thermal defoliation to reap the benefits provided by this nonchemical defoliation method. A study was conducted to evaluate broadband spectral data and unsupervised classification as tools for s...

Semi-automated surface mapping via unsupervised classification

NASA Astrophysics Data System (ADS)

D'Amore, M.; Le Scaon, R.; Helbert, J.; Maturilli, A.

2017-09-01

Due to the increasing volume of the returned data from space mission, the human search for correlation and identification of interesting features becomes more and more unfeasible. Statistical extraction of features via machine learning methods will increase the scientific output of remote sensing missions and aid the discovery of yet unknown feature hidden in dataset. Those methods exploit algorithm trained on features from multiple instrument, returning classification maps that explore intra-dataset correlation, allowing for the discovery of unknown features. We present two applications, one for Mercury and one for Vesta.

Hyperspectral image segmentation using a cooperative nonparametric approach

NASA Astrophysics Data System (ADS)

Taher, Akar; Chehdi, Kacem; Cariou, Claude

2013-10-01

In this paper a new unsupervised nonparametric cooperative and adaptive hyperspectral image segmentation approach is presented. The hyperspectral images are partitioned band by band in parallel and intermediate classification results are evaluated and fused, to get the final segmentation result. Two unsupervised nonparametric segmentation methods are used in parallel cooperation, namely the Fuzzy C-means (FCM) method, and the Linde-Buzo-Gray (LBG) algorithm, to segment each band of the image. The originality of the approach relies firstly on its local adaptation to the type of regions in an image (textured, non-textured), and secondly on the introduction of several levels of evaluation and validation of intermediate segmentation results before obtaining the final partitioning of the image. For the management of similar or conflicting results issued from the two classification methods, we gradually introduced various assessment steps that exploit the information of each spectral band and its adjacent bands, and finally the information of all the spectral bands. In our approach, the detected textured and non-textured regions are treated separately from feature extraction step, up to the final classification results. This approach was first evaluated on a large number of monocomponent images constructed from the Brodatz album. Then it was evaluated on two real applications using a respectively multispectral image for Cedar trees detection in the region of Baabdat (Lebanon) and a hyperspectral image for identification of invasive and non invasive vegetation in the region of Cieza (Spain). A correct classification rate (CCR) for the first application is over 97% and for the second application the average correct classification rate (ACCR) is over 99%.

Impervious surface mapping with Quickbird imagery

PubMed Central

Lu, Dengsheng; Hetrick, Scott; Moran, Emilio

2010-01-01

This research selects two study areas with different urban developments, sizes, and spatial patterns to explore the suitable methods for mapping impervious surface distribution using Quickbird imagery. The selected methods include per-pixel based supervised classification, segmentation-based classification, and a hybrid method. A comparative analysis of the results indicates that per-pixel based supervised classification produces a large number of “salt-and-pepper” pixels, and segmentation based methods can significantly reduce this problem. However, neither method can effectively solve the spectral confusion of impervious surfaces with water/wetland and bare soils and the impacts of shadows. In order to accurately map impervious surface distribution from Quickbird images, manual editing is necessary and may be the only way to extract impervious surfaces from the confused land covers and the shadow problem. This research indicates that the hybrid method consisting of thresholding techniques, unsupervised classification and limited manual editing provides the best performance. PMID:21643434

An Example of Unsupervised Networks Kohonen's Self-Organizing Feature Map

NASA Technical Reports Server (NTRS)

Niebur, Dagmar

1995-01-01

Kohonen's self-organizing feature map belongs to a class of unsupervised artificial neural network commonly referred to as topographic maps. It serves two purposes, the quantization and dimensionality reduction of date. A short description of its history and its biological context is given. We show that the inherent classification properties of the feature map make it a suitable candidate for solving the classification task in power system areas like load forecasting, fault diagnosis and security assessment.

Analysis of thematic mapper simulator data collected over eastern North Dakota

NASA Technical Reports Server (NTRS)

Anderson, J. E. (Principal Investigator)

1982-01-01

The results of the analysis of aircraft-acquired thematic mapper simulator (TMS) data, collected to investigate the utility of thematic mapper data in crop area and land cover estimates, are discussed. Results of the analysis indicate that the seven-channel TMS data are capable of delineating the 13 crop types included in the study to an overall pixel classification accuracy of 80.97% correct, with relative efficiencies for four crop types examined between 1.62 and 26.61. Both supervised and unsupervised spectral signature development techniques were evaluated. The unsupervised methods proved to be inferior (based on analysis of variance) for the majority of crop types considered. Given the ground truth data set used for spectral signature development as well as evaluation of performance, it is possible to demonstrate which signature development technique would produce the highest percent correct classification for each crop type.

Advanced Unsupervised Classification Methods to Detect Anomalies on Earthen Levees Using Polarimetric SAR Imagery

PubMed Central

Marapareddy, Ramakalavathi; Aanstoos, James V.; Younan, Nicolas H.

2016-01-01

Fully polarimetric Synthetic Aperture Radar (polSAR) data analysis has wide applications for terrain and ground cover classification. The dynamics of surface and subsurface water events can lead to slope instability resulting in slough slides on earthen levees. Early detection of these anomalies by a remote sensing approach could save time versus direct assessment. We used L-band Synthetic Aperture Radar (SAR) to screen levees for anomalies. SAR technology, due to its high spatial resolution and soil penetration capability, is a good choice for identifying problematic areas on earthen levees. Using the parameters entropy (H), anisotropy (A), alpha (α), and eigenvalues (λ, λ1, λ2, and λ3), we implemented several unsupervised classification algorithms for the identification of anomalies on the levee. The classification techniques applied are H/α, H/A, A/α, Wishart H/α, Wishart H/A/α, and H/α/λ classification algorithms. In this work, the effectiveness of the algorithms was demonstrated using quad-polarimetric L-band SAR imagery from the NASA Jet Propulsion Laboratory’s (JPL’s) Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR). The study area is a section of the lower Mississippi River valley in the Southern USA, where earthen flood control levees are maintained by the US Army Corps of Engineers. PMID:27322270

Evaluating unsupervised and supervised image classification methods for mapping cotton root rot

USDA-ARS?s Scientific Manuscript database

Cotton root rot, caused by the soilborne fungus Phymatotrichopsis omnivora, is one of the most destructive plant diseases occurring throughout the southwestern United States. This disease has plagued the cotton industry for over a century, but effective practices for its control are still lacking. R...

Simple adaptive sparse representation based classification schemes for EEG based brain-computer interface applications.

PubMed

Shin, Younghak; Lee, Seungchan; Ahn, Minkyu; Cho, Hohyun; Jun, Sung Chan; Lee, Heung-No

2015-11-01

One of the main problems related to electroencephalogram (EEG) based brain-computer interface (BCI) systems is the non-stationarity of the underlying EEG signals. This results in the deterioration of the classification performance during experimental sessions. Therefore, adaptive classification techniques are required for EEG based BCI applications. In this paper, we propose simple adaptive sparse representation based classification (SRC) schemes. Supervised and unsupervised dictionary update techniques for new test data and a dictionary modification method by using the incoherence measure of the training data are investigated. The proposed methods are very simple and additional computation for the re-training of the classifier is not needed. The proposed adaptive SRC schemes are evaluated using two BCI experimental datasets. The proposed methods are assessed by comparing classification results with the conventional SRC and other adaptive classification methods. On the basis of the results, we find that the proposed adaptive schemes show relatively improved classification accuracy as compared to conventional methods without requiring additional computation. Copyright © 2015 Elsevier Ltd. All rights reserved.

Physical Human Activity Recognition Using Wearable Sensors.

PubMed

Attal, Ferhat; Mohammed, Samer; Dedabrishvili, Mariam; Chamroukhi, Faicel; Oukhellou, Latifa; Amirat, Yacine

2015-12-11

This paper presents a review of different classification techniques used to recognize human activities from wearable inertial sensor data. Three inertial sensor units were used in this study and were worn by healthy subjects at key points of upper/lower body limbs (chest, right thigh and left ankle). Three main steps describe the activity recognition process: sensors' placement, data pre-processing and data classification. Four supervised classification techniques namely, k-Nearest Neighbor (k-NN), Support Vector Machines (SVM), Gaussian Mixture Models (GMM), and Random Forest (RF) as well as three unsupervised classification techniques namely, k-Means, Gaussian mixture models (GMM) and Hidden Markov Model (HMM), are compared in terms of correct classification rate, F-measure, recall, precision, and specificity. Raw data and extracted features are used separately as inputs of each classifier. The feature selection is performed using a wrapper approach based on the RF algorithm. Based on our experiments, the results obtained show that the k-NN classifier provides the best performance compared to other supervised classification algorithms, whereas the HMM classifier is the one that gives the best results among unsupervised classification algorithms. This comparison highlights which approach gives better performance in both supervised and unsupervised contexts. It should be noted that the obtained results are limited to the context of this study, which concerns the classification of the main daily living human activities using three wearable accelerometers placed at the chest, right shank and left ankle of the subject.

Physical Human Activity Recognition Using Wearable Sensors

PubMed Central

Attal, Ferhat; Mohammed, Samer; Dedabrishvili, Mariam; Chamroukhi, Faicel; Oukhellou, Latifa; Amirat, Yacine

2015-01-01

This paper presents a review of different classification techniques used to recognize human activities from wearable inertial sensor data. Three inertial sensor units were used in this study and were worn by healthy subjects at key points of upper/lower body limbs (chest, right thigh and left ankle). Three main steps describe the activity recognition process: sensors’ placement, data pre-processing and data classification. Four supervised classification techniques namely, k-Nearest Neighbor (k-NN), Support Vector Machines (SVM), Gaussian Mixture Models (GMM), and Random Forest (RF) as well as three unsupervised classification techniques namely, k-Means, Gaussian mixture models (GMM) and Hidden Markov Model (HMM), are compared in terms of correct classification rate, F-measure, recall, precision, and specificity. Raw data and extracted features are used separately as inputs of each classifier. The feature selection is performed using a wrapper approach based on the RF algorithm. Based on our experiments, the results obtained show that the k-NN classifier provides the best performance compared to other supervised classification algorithms, whereas the HMM classifier is the one that gives the best results among unsupervised classification algorithms. This comparison highlights which approach gives better performance in both supervised and unsupervised contexts. It should be noted that the obtained results are limited to the context of this study, which concerns the classification of the main daily living human activities using three wearable accelerometers placed at the chest, right shank and left ankle of the subject. PMID:26690450

Development and application of operational techniques for the inventory and monitoring of resources and uses for the Texas coastal zone

NASA Technical Reports Server (NTRS)

Harwood, P. (Principal Investigator); Finley, R.; Mcculloch, S.; Marphy, D.; Hupp, B.

1976-01-01

The author has identified the following significant results. Image interpretation mapping techniques were successfully applied to test site 5, an area with a semi-arid climate. The land cover/land use classification required further modification. A new program, HGROUP, added to the ADP classification schedule provides a convenient method for examining the spectral similarity between classes. This capability greatly simplifies the task of combining 25-30 unsupervised subclasses into about 15 major classes that approximately correspond to the land use/land cover classification scheme.

Semi-supervised and unsupervised extreme learning machines.

PubMed

Huang, Gao; Song, Shiji; Gupta, Jatinder N D; Wu, Cheng

2014-12-01

Extreme learning machines (ELMs) have proven to be efficient and effective learning mechanisms for pattern classification and regression. However, ELMs are primarily applied to supervised learning problems. Only a few existing research papers have used ELMs to explore unlabeled data. In this paper, we extend ELMs for both semi-supervised and unsupervised tasks based on the manifold regularization, thus greatly expanding the applicability of ELMs. The key advantages of the proposed algorithms are as follows: 1) both the semi-supervised ELM (SS-ELM) and the unsupervised ELM (US-ELM) exhibit learning capability and computational efficiency of ELMs; 2) both algorithms naturally handle multiclass classification or multicluster clustering; and 3) both algorithms are inductive and can handle unseen data at test time directly. Moreover, it is shown in this paper that all the supervised, semi-supervised, and unsupervised ELMs can actually be put into a unified framework. This provides new perspectives for understanding the mechanism of random feature mapping, which is the key concept in ELM theory. Empirical study on a wide range of data sets demonstrates that the proposed algorithms are competitive with the state-of-the-art semi-supervised or unsupervised learning algorithms in terms of accuracy and efficiency.

Unsupervised seismic facies analysis with spatial constraints using regularized fuzzy c-means

NASA Astrophysics Data System (ADS)

Song, Chengyun; Liu, Zhining; Cai, Hanpeng; Wang, Yaojun; Li, Xingming; Hu, Guangmin

2017-12-01

Seismic facies analysis techniques combine classification algorithms and seismic attributes to generate a map that describes main reservoir heterogeneities. However, most of the current classification algorithms only view the seismic attributes as isolated data regardless of their spatial locations, and the resulting map is generally sensitive to noise. In this paper, a regularized fuzzy c-means (RegFCM) algorithm is used for unsupervised seismic facies analysis. Due to the regularized term of the RegFCM algorithm, the data whose adjacent locations belong to same classification will play a more important role in the iterative process than other data. Therefore, this method can reduce the effect of seismic data noise presented in discontinuous regions. The synthetic data with different signal/noise values are used to demonstrate the noise tolerance ability of the RegFCM algorithm. Meanwhile, the fuzzy factor, the neighbour window size and the regularized weight are tested using various values, to provide a reference of how to set these parameters. The new approach is also applied to a real seismic data set from the F3 block of the Netherlands. The results show improved spatial continuity, with clear facies boundaries and channel morphology, which reveals that the method is an effective seismic facies analysis tool.

Unsupervised change detection in a particular vegetation land cover type using spectral angle mapper

NASA Astrophysics Data System (ADS)

Renza, Diego; Martinez, Estibaliz; Molina, Iñigo; Ballesteros L., Dora M.

2017-04-01

This paper presents a new unsupervised change detection methodology for multispectral images applied to specific land covers. The proposed method involves comparing each image against a reference spectrum, where the reference spectrum is obtained from the spectral signature of the type of coverage you want to detect. In this case the method has been tested using multispectral images (SPOT5) of the community of Madrid (Spain), and multispectral images (Quickbird) of an area over Indonesia that was impacted by the December 26, 2004 tsunami; here, the tests have focused on the detection of changes in vegetation. The image comparison is obtained by applying Spectral Angle Mapper between the reference spectrum and each multitemporal image. Then, a threshold to produce a single image of change is applied, which corresponds to the vegetation zones. The results for each multitemporal image are combined through an exclusive or (XOR) operation that selects vegetation zones that have changed over time. Finally, the derived results were compared against a supervised method based on classification with the Support Vector Machine. Furthermore, the NDVI-differencing and the Spectral Angle Mapper techniques were selected as unsupervised methods for comparison purposes. The main novelty of the method consists in the detection of changes in a specific land cover type (vegetation), therefore, for comparison purposes, the best scenario is to compare it with methods that aim to detect changes in a specific land cover type (vegetation). This is the main reason to select NDVI-based method and the post-classification method (SVM implemented in a standard software tool). To evaluate the improvements using a reference spectrum vector, the results are compared with the basic-SAM method. In SPOT5 image, the overall accuracy was 99.36% and the κ index was 90.11%; in Quickbird image, the overall accuracy was 97.5% and the κ index was 82.16%. Finally, the precision results of the method are comparable to those of a supervised method, supported by low detection of false positives and false negatives, along with a high overall accuracy and a high kappa index. On the other hand, the execution times were comparable to those of unsupervised methods of low computational load.

Mapping of rock types using a joint approach by combining the multivariate statistics, self-organizing map and Bayesian neural networks: an example from IODP 323 site

NASA Astrophysics Data System (ADS)

Karmakar, Mampi; Maiti, Saumen; Singh, Amrita; Ojha, Maheswar; Maity, Bhabani Sankar

2017-07-01

Modeling and classification of the subsurface lithology is very important to understand the evolution of the earth system. However, precise classification and mapping of lithology using a single framework are difficult due to the complexity and the nonlinearity of the problem driven by limited core sample information. Here, we implement a joint approach by combining the unsupervised and the supervised methods in a single framework for better classification and mapping of rock types. In the unsupervised method, we use the principal component analysis (PCA), K-means cluster analysis (K-means), dendrogram analysis, Fuzzy C-means (FCM) cluster analysis and self-organizing map (SOM). In the supervised method, we use the Bayesian neural networks (BNN) optimized by the Hybrid Monte Carlo (HMC) (BNN-HMC) and the scaled conjugate gradient (SCG) (BNN-SCG) techniques. We use P-wave velocity, density, neutron porosity, resistivity and gamma ray logs of the well U1343E of the Integrated Ocean Drilling Program (IODP) Expedition 323 in the Bering Sea slope region. While the SOM algorithm allows us to visualize the clustering results in spatial domain, the combined classification schemes (supervised and unsupervised) uncover the different patterns of lithology such of as clayey-silt, diatom-silt and silty-clay from an un-cored section of the drilled hole. In addition, the BNN approach is capable of estimating uncertainty in the predictive modeling of three types of rocks over the entire lithology section at site U1343. Alternate succession of clayey-silt, diatom-silt and silty-clay may be representative of crustal inhomogeneity in general and thus could be a basis for detail study related to the productivity of methane gas in the oceans worldwide. Moreover, at the 530 m depth down below seafloor (DSF), the transition from Pliocene to Pleistocene could be linked to lithological alternation between the clayey-silt and the diatom-silt. The present results could provide the basis for the detailed study to get deeper insight into the Bering Sea' sediment deposition and sequence.

An automatic taxonomy of galaxy morphology using unsupervised machine learning

NASA Astrophysics Data System (ADS)

Hocking, Alex; Geach, James E.; Sun, Yi; Davey, Neil

2018-01-01

We present an unsupervised machine learning technique that automatically segments and labels galaxies in astronomical imaging surveys using only pixel data. Distinct from previous unsupervised machine learning approaches used in astronomy we use no pre-selection or pre-filtering of target galaxy type to identify galaxies that are similar. We demonstrate the technique on the Hubble Space Telescope (HST) Frontier Fields. By training the algorithm using galaxies from one field (Abell 2744) and applying the result to another (MACS 0416.1-2403), we show how the algorithm can cleanly separate early and late type galaxies without any form of pre-directed training for what an 'early' or 'late' type galaxy is. We then apply the technique to the HST Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey (CANDELS) fields, creating a catalogue of approximately 60 000 classifications. We show how the automatic classification groups galaxies of similar morphological (and photometric) type and make the classifications public via a catalogue, a visual catalogue and galaxy similarity search. We compare the CANDELS machine-based classifications to human-classifications from the Galaxy Zoo: CANDELS project. Although there is not a direct mapping between Galaxy Zoo and our hierarchical labelling, we demonstrate a good level of concordance between human and machine classifications. Finally, we show how the technique can be used to identify rarer objects and present lensed galaxy candidates from the CANDELS imaging.

An Unsupervised kNN Method to Systematically Detect Changes in Protein Localization in High-Throughput Microscopy Images.

PubMed

Lu, Alex Xijie; Moses, Alan M

2016-01-01

Despite the importance of characterizing genes that exhibit subcellular localization changes between conditions in proteome-wide imaging experiments, many recent studies still rely upon manual evaluation to assess the results of high-throughput imaging experiments. We describe and demonstrate an unsupervised k-nearest neighbours method for the detection of localization changes. Compared to previous classification-based supervised change detection methods, our method is much simpler and faster, and operates directly on the feature space to overcome limitations in needing to manually curate training sets that may not generalize well between screens. In addition, the output of our method is flexible in its utility, generating both a quantitatively ranked list of localization changes that permit user-defined cut-offs, and a vector for each gene describing feature-wise direction and magnitude of localization changes. We demonstrate that our method is effective at the detection of localization changes using the Δrpd3 perturbation in Saccharomyces cerevisiae, where we capture 71.4% of previously known changes within the top 10% of ranked genes, and find at least four new localization changes within the top 1% of ranked genes. The results of our analysis indicate that simple unsupervised methods may be able to identify localization changes in images without laborious manual image labelling steps.

The dynamics of human-induced land cover change in miombo ecosystems of southern Africa

NASA Astrophysics Data System (ADS)

Jaiteh, Malanding Sambou

Understanding human-induced land cover change in the miombo require the consistent, geographically-referenced, data on temporal land cover characteristics as well as biophysical and socioeconomic drivers of land use, the major cause of land cover change. The overall goal of this research to examine the applications of high-resolution satellite remote sensing data in studying the dynamics of human-induced land cover change in the miombo. Specific objectives are to: (1) evaluate the applications of computer-assisted classification of Landsat Thematic Mapper (TM) data for land cover mapping in the miombo and (2) analyze spatial and temporal patterns of landscape change locations in the miombo. Stepwise Thematic Classification, STC (a hybrid supervised-unsupervised classification) procedure for classifying Landsat TM data was developed and tested using Landsat TM data. Classification accuracy results were compared to those from supervised and unsupervised classification. The STC provided the highest classification accuracy i.e., 83.9% correspondence between classified and referenced data compared to 44.2% and 34.5% for unsupervised and supervised classification respectively. Improvements in the classification process can be attributed to thematic stratification of the image data into spectrally homogenous (thematic) groups and step-by-step classification of the groups using supervised or unsupervised classification techniques. Supervised classification failed to classify 18% of the scene evidence that training data used did not adequately represent all of the variability in the data. Application of the procedure in drier miombo produced overall classification accuracy of 63%. This is much lower than that of wetter miombo. The results clearly demonstrate that digital classification of Landsat TM can be successfully implemented in the miombo without intensive fieldwork. Spatial characteristics of land cover change in agricultural and forested landscapes in central Malawi were analyzed for the period 1984 to 1995 spatial pattern analysis methods. Shifting cultivation areas, Agriculture in forested landscape, experienced highest rate of woodland cover fragmentation with mean patch size of closed woodland cover decreasing from 20ha to 7.5ha. Permanent bare (cropland and settlement) in intensive agricultural matrix landscapes increased 52% largely through the conversion of fallow areas. Protected National Park area remained fairly unchanged although closed woodland area increased by 4%, mainly from regeneration of open woodland. This study provided evidence that changes in spatial characteristics in the miombo differ with landscape. Land use change (i.e. conversion to cropland) is the primary driving force behind changes in landscape spatial patterns. Also, results revealed that exclusion of intense human use (i.e. cultivation and woodcutting) through regulations and/or fencing increased both closed woodland area (through regeneration of open woodland) and overall connectivity in the landscape. Spatial characteristics of land cover change were analyzed at locations in Malawi (wetter miombo) and Zimbabwe (drier miombo). Results indicate land cover dynamics differ both between and within case study sites. In communal areas in the Kasungu scene, land cover change is dominated by woodland fragmentation to open vegetation. Change in private commercial lands was dominantly expansion of bare (settlement and cropland) areas primarily at the expense of open vegetation (fallow land).

The composite sequential clustering technique for analysis of multispectral scanner data

NASA Technical Reports Server (NTRS)

Su, M. Y.

1972-01-01

The clustering technique consists of two parts: (1) a sequential statistical clustering which is essentially a sequential variance analysis, and (2) a generalized K-means clustering. In this composite clustering technique, the output of (1) is a set of initial clusters which are input to (2) for further improvement by an iterative scheme. This unsupervised composite technique was employed for automatic classification of two sets of remote multispectral earth resource observations. The classification accuracy by the unsupervised technique is found to be comparable to that by traditional supervised maximum likelihood classification techniques. The mathematical algorithms for the composite sequential clustering program and a detailed computer program description with job setup are given.

A novel unsupervised spike sorting algorithm for intracranial EEG.

PubMed

Yadav, R; Shah, A K; Loeb, J A; Swamy, M N S; Agarwal, R

2011-01-01

This paper presents a novel, unsupervised spike classification algorithm for intracranial EEG. The method combines template matching and principal component analysis (PCA) for building a dynamic patient-specific codebook without a priori knowledge of the spike waveforms. The problem of misclassification due to overlapping classes is resolved by identifying similar classes in the codebook using hierarchical clustering. Cluster quality is visually assessed by projecting inter- and intra-clusters onto a 3D plot. Intracranial EEG from 5 patients was utilized to optimize the algorithm. The resulting codebook retains 82.1% of the detected spikes in non-overlapping and disjoint clusters. Initial results suggest a definite role of this method for both rapid review and quantitation of interictal spikes that could enhance both clinical treatment and research studies on epileptic patients.

Cloud classification from satellite data using a fuzzy sets algorithm: A polar example

NASA Technical Reports Server (NTRS)

Key, J. R.; Maslanik, J. A.; Barry, R. G.

1988-01-01

Where spatial boundaries between phenomena are diffuse, classification methods which construct mutually exclusive clusters seem inappropriate. The Fuzzy c-means (FCM) algorithm assigns each observation to all clusters, with membership values as a function of distance to the cluster center. The FCM algorithm is applied to AVHRR data for the purpose of classifying polar clouds and surfaces. Careful analysis of the fuzzy sets can provide information on which spectral channels are best suited to the classification of particular features, and can help determine likely areas of misclassification. General agreement in the resulting classes and cloud fraction was found between the FCM algorithm, a manual classification, and an unsupervised maximum likelihood classifier.

Unsupervised Feature Learning With Winner-Takes-All Based STDP

PubMed Central

Ferré, Paul; Mamalet, Franck; Thorpe, Simon J.

2018-01-01

We present a novel strategy for unsupervised feature learning in image applications inspired by the Spike-Timing-Dependent-Plasticity (STDP) biological learning rule. We show equivalence between rank order coding Leaky-Integrate-and-Fire neurons and ReLU artificial neurons when applied to non-temporal data. We apply this to images using rank-order coding, which allows us to perform a full network simulation with a single feed-forward pass using GPU hardware. Next we introduce a binary STDP learning rule compatible with training on batches of images. Two mechanisms to stabilize the training are also presented : a Winner-Takes-All (WTA) framework which selects the most relevant patches to learn from along the spatial dimensions, and a simple feature-wise normalization as homeostatic process. This learning process allows us to train multi-layer architectures of convolutional sparse features. We apply our method to extract features from the MNIST, ETH80, CIFAR-10, and STL-10 datasets and show that these features are relevant for classification. We finally compare these results with several other state of the art unsupervised learning methods. PMID:29674961

Hydrometeor classification through statistical clustering of polarimetric radar measurements: a semi-supervised approach

NASA Astrophysics Data System (ADS)

Besic, Nikola; Ventura, Jordi Figueras i.; Grazioli, Jacopo; Gabella, Marco; Germann, Urs; Berne, Alexis

2016-09-01

Polarimetric radar-based hydrometeor classification is the procedure of identifying different types of hydrometeors by exploiting polarimetric radar observations. The main drawback of the existing supervised classification methods, mostly based on fuzzy logic, is a significant dependency on a presumed electromagnetic behaviour of different hydrometeor types. Namely, the results of the classification largely rely upon the quality of scattering simulations. When it comes to the unsupervised approach, it lacks the constraints related to the hydrometeor microphysics. The idea of the proposed method is to compensate for these drawbacks by combining the two approaches in a way that microphysical hypotheses can, to a degree, adjust the content of the classes obtained statistically from the observations. This is done by means of an iterative approach, performed offline, which, in a statistical framework, examines clustered representative polarimetric observations by comparing them to the presumed polarimetric properties of each hydrometeor class. Aside from comparing, a routine alters the content of clusters by encouraging further statistical clustering in case of non-identification. By merging all identified clusters, the multi-dimensional polarimetric signatures of various hydrometeor types are obtained for each of the studied representative datasets, i.e. for each radar system of interest. These are depicted by sets of centroids which are then employed in operational labelling of different hydrometeors. The method has been applied on three C-band datasets, each acquired by different operational radar from the MeteoSwiss Rad4Alp network, as well as on two X-band datasets acquired by two research mobile radars. The results are discussed through a comparative analysis which includes a corresponding supervised and unsupervised approach, emphasising the operational potential of the proposed method.

Change detection and classification in brain MR images using change vector analysis.

PubMed

Simões, Rita; Slump, Cornelis

2011-01-01

The automatic detection of longitudinal changes in brain images is valuable in the assessment of disease evolution and treatment efficacy. Most existing change detection methods that are currently used in clinical research to monitor patients suffering from neurodegenerative diseases--such as Alzheimer's--focus on large-scale brain deformations. However, such patients often have other brain impairments, such as infarcts, white matter lesions and hemorrhages, which are typically overlooked by the deformation-based methods. Other unsupervised change detection algorithms have been proposed to detect tissue intensity changes. The outcome of these methods is typically a binary change map, which identifies changed brain regions. However, understanding what types of changes these regions underwent is likely to provide equally important information about lesion evolution. In this paper, we present an unsupervised 3D change detection method based on Change Vector Analysis. We compute and automatically threshold the Generalized Likelihood Ratio map to obtain a binary change map. Subsequently, we perform histogram-based clustering to classify the change vectors. We obtain a Kappa Index of 0.82 using various types of simulated lesions. The classification error is 2%. Finally, we are able to detect and discriminate both small changes and ventricle expansions in datasets from Mild Cognitive Impairment patients.

Automated attribution of remotely-sensed ecological disturbances using spatial and temporal characteristics of common disturbance classes.

NASA Astrophysics Data System (ADS)

Cooper, L. A.; Ballantyne, A.

2017-12-01

Forest disturbances are critical components of ecosystems. Knowledge of their prevalence and impacts is necessary to accurately describe forest health and ecosystem services through time. While there are currently several methods available to identify and describe forest disturbances, especially those which occur in North America, the process remains inefficient and inaccessible in many parts of the world. Here, we introduce a preliminary approach to streamline and automate both the detection and attribution of forest disturbances. We use a combination of the Breaks for Additive Season and Trend (BFAST) detection algorithm to detect disturbances in combination with supervised and unsupervised classification algorithms to attribute the detections to disturbance classes. Both spatial and temporal disturbance characteristics are derived and utilized for the goal of automating the disturbance attribution process. The resulting preliminary algorithm is applied to up-scaled (100m) Landsat data for several different ecosystems in North America, with varying success. Our results indicate that supervised classification is more reliable than unsupervised classification, but that limited training data are required for a region. Future work will improve the algorithm through refining and validating at sites within North America before applying this approach globally.

Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data

PubMed Central

Bryan, Kenneth; Cunningham, Pádraig

2008-01-01

Background Microarrays have the capacity to measure the expressions of thousands of genes in parallel over many experimental samples. The unsupervised classification technique of bicluster analysis has been employed previously to uncover gene expression correlations over subsets of samples with the aim of providing a more accurate model of the natural gene functional classes. This approach also has the potential to aid functional annotation of unclassified open reading frames (ORFs). Until now this aspect of biclustering has been under-explored. In this work we illustrate how bicluster analysis may be extended into a 'semi-supervised' ORF annotation approach referred to as BALBOA. Results The efficacy of the BALBOA ORF classification technique is first assessed via cross validation and compared to a multi-class k-Nearest Neighbour (kNN) benchmark across three independent gene expression datasets. BALBOA is then used to assign putative functional annotations to unclassified yeast ORFs. These predictions are evaluated using existing experimental and protein sequence information. Lastly, we employ a related semi-supervised method to predict the presence of novel functional modules within yeast. Conclusion In this paper we demonstrate how unsupervised classification methods, such as bicluster analysis, may be extended using of available annotations to form semi-supervised approaches within the gene expression analysis domain. We show that such methods have the potential to improve upon supervised approaches and shed new light on the functions of unclassified ORFs and their co-regulation. PMID:18831786

Epithelium-Stroma Classification via Convolutional Neural Networks and Unsupervised Domain Adaptation in Histopathological Images.

PubMed

Huang, Yue; Zheng, Han; Liu, Chi; Ding, Xinghao; Rohde, Gustavo K

2017-11-01

Epithelium-stroma classification is a necessary preprocessing step in histopathological image analysis. Current deep learning based recognition methods for histology data require collection of large volumes of labeled data in order to train a new neural network when there are changes to the image acquisition procedure. However, it is extremely expensive for pathologists to manually label sufficient volumes of data for each pathology study in a professional manner, which results in limitations in real-world applications. A very simple but effective deep learning method, that introduces the concept of unsupervised domain adaptation to a simple convolutional neural network (CNN), has been proposed in this paper. Inspired by transfer learning, our paper assumes that the training data and testing data follow different distributions, and there is an adaptation operation to more accurately estimate the kernels in CNN in feature extraction, in order to enhance performance by transferring knowledge from labeled data in source domain to unlabeled data in target domain. The model has been evaluated using three independent public epithelium-stroma datasets by cross-dataset validations. The experimental results demonstrate that for epithelium-stroma classification, the proposed framework outperforms the state-of-the-art deep neural network model, and it also achieves better performance than other existing deep domain adaptation methods. The proposed model can be considered to be a better option for real-world applications in histopathological image analysis, since there is no longer a requirement for large-scale labeled data in each specified domain.

Spatio-spectral classification of hyperspectral images for brain cancer detection during surgical operations.

PubMed

Fabelo, Himar; Ortega, Samuel; Ravi, Daniele; Kiran, B Ravi; Sosa, Coralia; Bulters, Diederik; Callicó, Gustavo M; Bulstrode, Harry; Szolna, Adam; Piñeiro, Juan F; Kabwama, Silvester; Madroñal, Daniel; Lazcano, Raquel; J-O'Shanahan, Aruma; Bisshopp, Sara; Hernández, María; Báez, Abelardo; Yang, Guang-Zhong; Stanciulescu, Bogdan; Salvador, Rubén; Juárez, Eduardo; Sarmiento, Roberto

2018-01-01

Surgery for brain cancer is a major problem in neurosurgery. The diffuse infiltration into the surrounding normal brain by these tumors makes their accurate identification by the naked eye difficult. Since surgery is the common treatment for brain cancer, an accurate radical resection of the tumor leads to improved survival rates for patients. However, the identification of the tumor boundaries during surgery is challenging. Hyperspectral imaging is a non-contact, non-ionizing and non-invasive technique suitable for medical diagnosis. This study presents the development of a novel classification method taking into account the spatial and spectral characteristics of the hyperspectral images to help neurosurgeons to accurately determine the tumor boundaries in surgical-time during the resection, avoiding excessive excision of normal tissue or unintentionally leaving residual tumor. The algorithm proposed in this study to approach an efficient solution consists of a hybrid framework that combines both supervised and unsupervised machine learning methods. Firstly, a supervised pixel-wise classification using a Support Vector Machine classifier is performed. The generated classification map is spatially homogenized using a one-band representation of the HS cube, employing the Fixed Reference t-Stochastic Neighbors Embedding dimensional reduction algorithm, and performing a K-Nearest Neighbors filtering. The information generated by the supervised stage is combined with a segmentation map obtained via unsupervised clustering employing a Hierarchical K-Means algorithm. The fusion is performed using a majority voting approach that associates each cluster with a certain class. To evaluate the proposed approach, five hyperspectral images of surface of the brain affected by glioblastoma tumor in vivo from five different patients have been used. The final classification maps obtained have been analyzed and validated by specialists. These preliminary results are promising, obtaining an accurate delineation of the tumor area.

Spatio-spectral classification of hyperspectral images for brain cancer detection during surgical operations

PubMed Central

Kabwama, Silvester; Madroñal, Daniel; Lazcano, Raquel; J-O’Shanahan, Aruma; Bisshopp, Sara; Hernández, María; Báez, Abelardo; Yang, Guang-Zhong; Stanciulescu, Bogdan; Salvador, Rubén; Juárez, Eduardo; Sarmiento, Roberto

2018-01-01

Surgery for brain cancer is a major problem in neurosurgery. The diffuse infiltration into the surrounding normal brain by these tumors makes their accurate identification by the naked eye difficult. Since surgery is the common treatment for brain cancer, an accurate radical resection of the tumor leads to improved survival rates for patients. However, the identification of the tumor boundaries during surgery is challenging. Hyperspectral imaging is a non-contact, non-ionizing and non-invasive technique suitable for medical diagnosis. This study presents the development of a novel classification method taking into account the spatial and spectral characteristics of the hyperspectral images to help neurosurgeons to accurately determine the tumor boundaries in surgical-time during the resection, avoiding excessive excision of normal tissue or unintentionally leaving residual tumor. The algorithm proposed in this study to approach an efficient solution consists of a hybrid framework that combines both supervised and unsupervised machine learning methods. Firstly, a supervised pixel-wise classification using a Support Vector Machine classifier is performed. The generated classification map is spatially homogenized using a one-band representation of the HS cube, employing the Fixed Reference t-Stochastic Neighbors Embedding dimensional reduction algorithm, and performing a K-Nearest Neighbors filtering. The information generated by the supervised stage is combined with a segmentation map obtained via unsupervised clustering employing a Hierarchical K-Means algorithm. The fusion is performed using a majority voting approach that associates each cluster with a certain class. To evaluate the proposed approach, five hyperspectral images of surface of the brain affected by glioblastoma tumor in vivo from five different patients have been used. The final classification maps obtained have been analyzed and validated by specialists. These preliminary results are promising, obtaining an accurate delineation of the tumor area. PMID:29554126

Comparison of unsupervised classification methods for brain tumor segmentation using multi-parametric MRI.

PubMed

Sauwen, N; Acou, M; Van Cauter, S; Sima, D M; Veraart, J; Maes, F; Himmelreich, U; Achten, E; Van Huffel, S

2016-01-01

Tumor segmentation is a particularly challenging task in high-grade gliomas (HGGs), as they are among the most heterogeneous tumors in oncology. An accurate delineation of the lesion and its main subcomponents contributes to optimal treatment planning, prognosis and follow-up. Conventional MRI (cMRI) is the imaging modality of choice for manual segmentation, and is also considered in the vast majority of automated segmentation studies. Advanced MRI modalities such as perfusion-weighted imaging (PWI), diffusion-weighted imaging (DWI) and magnetic resonance spectroscopic imaging (MRSI) have already shown their added value in tumor tissue characterization, hence there have been recent suggestions of combining different MRI modalities into a multi-parametric MRI (MP-MRI) approach for brain tumor segmentation. In this paper, we compare the performance of several unsupervised classification methods for HGG segmentation based on MP-MRI data including cMRI, DWI, MRSI and PWI. Two independent MP-MRI datasets with a different acquisition protocol were available from different hospitals. We demonstrate that a hierarchical non-negative matrix factorization variant which was previously introduced for MP-MRI tumor segmentation gives the best performance in terms of mean Dice-scores for the pathologic tissue classes on both datasets.

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification.

PubMed

Mehryary, Farrokh; Kaewphan, Suwisa; Hakala, Kai; Ginter, Filip

2016-01-01

Biomedical event extraction is one of the key tasks in biomedical text mining, supporting various applications such as database curation and hypothesis generation. Several systems, some of which have been applied at a large scale, have been introduced to solve this task. Past studies have shown that the identification of the phrases describing biological processes, also known as trigger detection, is a crucial part of event extraction, and notable overall performance gains can be obtained by solely focusing on this sub-task. In this paper we propose a novel approach for filtering falsely identified triggers from large-scale event databases, thus improving the quality of knowledge extraction. Our method relies on state-of-the-art word embeddings, event statistics gathered from the whole biomedical literature, and both supervised and unsupervised machine learning techniques. We focus on EVEX, an event database covering the whole PubMed and PubMed Central Open Access literature containing more than 40 million extracted events. The top most frequent EVEX trigger words are hierarchically clustered, and the resulting cluster tree is pruned to identify words that can never act as triggers regardless of their context. For rarely occurring trigger words we introduce a supervised approach trained on the combination of trigger word classification produced by the unsupervised clustering method and manual annotation. The method is evaluated on the official test set of BioNLP Shared Task on Event Extraction. The evaluation shows that the method can be used to improve the performance of the state-of-the-art event extraction systems. This successful effort also translates into removing 1,338,075 of potentially incorrect events from EVEX, thus greatly improving the quality of the data. The method is not solely bound to the EVEX resource and can be thus used to improve the quality of any event extraction system or database. The data and source code for this work are available at: http://bionlp-www.utu.fi/trigger-clustering/.

Advanced soft computing diagnosis method for tumour grading.

PubMed

Papageorgiou, E I; Spyridonos, P P; Stylios, C D; Ravazoula, P; Groumpos, P P; Nikiforidis, G N

2006-01-01

To develop an advanced diagnostic method for urinary bladder tumour grading. A novel soft computing modelling methodology based on the augmentation of fuzzy cognitive maps (FCMs) with the unsupervised active Hebbian learning (AHL) algorithm is applied. One hundred and twenty-eight cases of urinary bladder cancer were retrieved from the archives of the Department of Histopathology, University Hospital of Patras, Greece. All tumours had been characterized according to the classical World Health Organization (WHO) grading system. To design the FCM model for tumour grading, three experts histopathologists defined the main histopathological features (concepts) and their impact on grade characterization. The resulted FCM model consisted of nine concepts. Eight concepts represented the main histopathological features for tumour grading. The ninth concept represented the tumour grade. To increase the classification ability of the FCM model, the AHL algorithm was applied to adjust the weights of the FCM. The proposed FCM grading model achieved a classification accuracy of 72.5%, 74.42% and 95.55% for tumours of grades I, II and III, respectively. An advanced computerized method to support tumour grade diagnosis decision was proposed and developed. The novelty of the method is based on employing the soft computing method of FCMs to represent specialized knowledge on histopathology and on augmenting FCMs ability using an unsupervised learning algorithm, the AHL. The proposed method performs with reasonably high accuracy compared to other existing methods and at the same time meets the physicians' requirements for transparency and explicability.

Clonal Selection Based Artificial Immune System for Generalized Pattern Recognition

NASA Technical Reports Server (NTRS)

Huntsberger, Terry

2011-01-01

The last two decades has seen a rapid increase in the application of AIS (Artificial Immune Systems) modeled after the human immune system to a wide range of areas including network intrusion detection, job shop scheduling, classification, pattern recognition, and robot control. JPL (Jet Propulsion Laboratory) has developed an integrated pattern recognition/classification system called AISLE (Artificial Immune System for Learning and Exploration) based on biologically inspired models of B-cell dynamics in the immune system. When used for unsupervised or supervised classification, the method scales linearly with the number of dimensions, has performance that is relatively independent of the total size of the dataset, and has been shown to perform as well as traditional clustering methods. When used for pattern recognition, the method efficiently isolates the appropriate matches in the data set. The paper presents the underlying structure of AISLE and the results from a number of experimental studies.

Unsupervised Fault Diagnosis of a Gear Transmission Chain Using a Deep Belief Network

PubMed Central

He, Jun; Yang, Shixi; Gan, Chunbiao

2017-01-01

Artificial intelligence (AI) techniques, which can effectively analyze massive amounts of fault data and automatically provide accurate diagnosis results, have been widely applied to fault diagnosis of rotating machinery. Conventional AI methods are applied using features selected by a human operator, which are manually extracted based on diagnostic techniques and field expertise. However, developing robust features for each diagnostic purpose is often labour-intensive and time-consuming, and the features extracted for one specific task may be unsuitable for others. In this paper, a novel AI method based on a deep belief network (DBN) is proposed for the unsupervised fault diagnosis of a gear transmission chain, and the genetic algorithm is used to optimize the structural parameters of the network. Compared to the conventional AI methods, the proposed method can adaptively exploit robust features related to the faults by unsupervised feature learning, thus requires less prior knowledge about signal processing techniques and diagnostic expertise. Besides, it is more powerful at modelling complex structured data. The effectiveness of the proposed method is validated using datasets from rolling bearings and gearbox. To show the superiority of the proposed method, its performance is compared with two well-known classifiers, i.e., back propagation neural network (BPNN) and support vector machine (SVM). The fault classification accuracies are 99.26% for rolling bearings and 100% for gearbox when using the proposed method, which are much higher than that of the other two methods. PMID:28677638

Unsupervised Fault Diagnosis of a Gear Transmission Chain Using a Deep Belief Network.

PubMed

He, Jun; Yang, Shixi; Gan, Chunbiao

2017-07-04

Artificial intelligence (AI) techniques, which can effectively analyze massive amounts of fault data and automatically provide accurate diagnosis results, have been widely applied to fault diagnosis of rotating machinery. Conventional AI methods are applied using features selected by a human operator, which are manually extracted based on diagnostic techniques and field expertise. However, developing robust features for each diagnostic purpose is often labour-intensive and time-consuming, and the features extracted for one specific task may be unsuitable for others. In this paper, a novel AI method based on a deep belief network (DBN) is proposed for the unsupervised fault diagnosis of a gear transmission chain, and the genetic algorithm is used to optimize the structural parameters of the network. Compared to the conventional AI methods, the proposed method can adaptively exploit robust features related to the faults by unsupervised feature learning, thus requires less prior knowledge about signal processing techniques and diagnostic expertise. Besides, it is more powerful at modelling complex structured data. The effectiveness of the proposed method is validated using datasets from rolling bearings and gearbox. To show the superiority of the proposed method, its performance is compared with two well-known classifiers, i.e., back propagation neural network (BPNN) and support vector machine (SVM). The fault classification accuracies are 99.26% for rolling bearings and 100% for gearbox when using the proposed method, which are much higher than that of the other two methods.

An Integrated approach to the Space Situational Awareness Problem

DTIC Science & Technology

2016-12-15

data coming from the sensors. We developed particle-based Gaussian Mixture Filters that are immune to the “curse of dimensionality”/ “particle...depletion” problem inherent in particle filtering . This method maps the data assimilation/ filtering problem into an unsupervised learning problem. Results...Gaussian Mixture Filters ; particle depletion; Finite Set Statistics 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF ABSTRACT UU 18. NUMBER OF PAGES 1

SOM Classification of Martian TES Data

NASA Technical Reports Server (NTRS)

Hogan, R. C.; Roush, T. L.

2002-01-01

A classification scheme based on unsupervised self-organizing maps (SOM) is described. Results from its application to the ASU mineral spectral database are presented. Applications to the Martian Thermal Emission Spectrometer data are discussed. Additional information is contained in the original extended abstract.

An unsupervised two-stage clustering approach for forest structure classification based on X-band InSAR data - A case study in complex temperate forest stands

NASA Astrophysics Data System (ADS)

Abdullahi, Sahra; Schardt, Mathias; Pretzsch, Hans

2017-05-01

Forest structure at stand level plays a key role for sustainable forest management, since the biodiversity, productivity, growth and stability of the forest can be positively influenced by managing its structural diversity. In contrast to field-based measurements, remote sensing techniques offer a cost-efficient opportunity to collect area-wide information about forest stand structure with high spatial and temporal resolution. Especially Interferometric Synthetic Aperture Radar (InSAR), which facilitates worldwide acquisition of 3d information independent from weather conditions and illumination, is convenient to capture forest stand structure. This study purposes an unsupervised two-stage clustering approach for forest structure classification based on height information derived from interferometric X-band SAR data which was performed in complex temperate forest stands of Traunstein forest (South Germany). In particular, a four dimensional input data set composed of first-order height statistics was non-linearly projected on a two-dimensional Self-Organizing Map, spatially ordered according to similarity (based on the Euclidean distance) in the first stage and classified using the k-means algorithm in the second stage. The study demonstrated that X-band InSAR data exhibits considerable capabilities for forest structure classification. Moreover, the unsupervised classification approach achieved meaningful and reasonable results by means of comparison to aerial imagery and LiDAR data.

Clustering performance comparison using K-means and expectation maximization algorithms.

PubMed

Jung, Yong Gyu; Kang, Min Soo; Heo, Jun

2014-11-14

Clustering is an important means of data mining based on separating data categories by similar features. Unlike the classification algorithm, clustering belongs to the unsupervised type of algorithms. Two representatives of the clustering algorithms are the K -means and the expectation maximization (EM) algorithm. Linear regression analysis was extended to the category-type dependent variable, while logistic regression was achieved using a linear combination of independent variables. To predict the possibility of occurrence of an event, a statistical approach is used. However, the classification of all data by means of logistic regression analysis cannot guarantee the accuracy of the results. In this paper, the logistic regression analysis is applied to EM clusters and the K -means clustering method for quality assessment of red wine, and a method is proposed for ensuring the accuracy of the classification results.

Mapping South San Francisco Bay's seabed diversity for use in wetland restoration planning

USGS Publications Warehouse

Fregoso, Theresa A.; Jaffe, B.; Rathwell, G.; Collins, W.; Rhynas, K.; Tomlin, V.; Sullivan, S.

2006-01-01

Data for an acoustic seabed classification were collected as a part of a California Coastal Conservancy funded bathymetric survey of South Bay in early 2005.  A QTC VIEW seabed classification system recorded echoes from a sungle bean 50 kHz echosounder.  Approximately 450,000 seabed classification records were generated from an are of of about 30 sq. miles.  Ten district acoustic classes were identified through an unsupervised classification system using principle component and cluster analyses.  One hundred and sixty-one grab samples and forty-five benthic community composition data samples collected in the study area shortly before and after the seabed classification survey, further refined the ten classes into groups based on grain size.  A preliminary map of surficial grain size of South Bay was developed from the combination of the seabed classification and the grab and benthic samples.  The initial seabed classification map, the grain size map, and locations of sediment samples will be displayed along with the methods of acousitc seabed classification.

A segmentation and classification scheme for single tooth in MicroCT images based on 3D level set and k-means+.

PubMed

Wang, Liansheng; Li, Shusheng; Chen, Rongzhen; Liu, Sze-Yu; Chen, Jyh-Cheng

2017-04-01

Accurate classification of different anatomical structures of teeth from medical images provides crucial information for the stress analysis in dentistry. Usually, the anatomical structures of teeth are manually labeled by experienced clinical doctors, which is time consuming. However, automatic segmentation and classification is a challenging task because the anatomical structures and surroundings of the tooth in medical images are rather complex. Therefore, in this paper, we propose an effective framework which is designed to segment the tooth with a Selective Binary and Gaussian Filtering Regularized Level Set (GFRLS) method improved by fully utilizing 3 dimensional (3D) information, and classify the tooth by employing unsupervised learning i.e., k-means++ method. In order to evaluate the proposed method, the experiments are conducted on the sufficient and extensive datasets of mandibular molars. The experimental results show that our method can achieve higher accuracy and robustness compared to other three clustering methods. Copyright © 2016 Elsevier Ltd. All rights reserved.

Communications and control for electric power systems: Power flow classification for static security assessment

NASA Technical Reports Server (NTRS)

Niebur, D.; Germond, A.

1993-01-01

This report investigates the classification of power system states using an artificial neural network model, Kohonen's self-organizing feature map. The ultimate goal of this classification is to assess power system static security in real-time. Kohonen's self-organizing feature map is an unsupervised neural network which maps N-dimensional input vectors to an array of M neurons. After learning, the synaptic weight vectors exhibit a topological organization which represents the relationship between the vectors of the training set. This learning is unsupervised, which means that the number and size of the classes are not specified beforehand. In the application developed in this report, the input vectors used as the training set are generated by off-line load-flow simulations. The learning algorithm and the results of the organization are discussed.

Random forests for classification in ecology

USGS Publications Warehouse

Cutler, D.R.; Edwards, T.C.; Beard, K.H.; Cutler, A.; Hess, K.T.; Gibson, J.; Lawler, J.J.

2007-01-01

Classification procedures are some of the most widely used statistical methods in ecology. Random forests (RF) is a new and powerful statistical classifier that is well established in other disciplines but is relatively unknown in ecology. Advantages of RF compared to other statistical classifiers include (1) very high classification accuracy; (2) a novel method of determining variable importance; (3) ability to model complex interactions among predictor variables; (4) flexibility to perform several types of statistical data analysis, including regression, classification, survival analysis, and unsupervised learning; and (5) an algorithm for imputing missing values. We compared the accuracies of RF and four other commonly used statistical classifiers using data on invasive plant species presence in Lava Beds National Monument, California, USA, rare lichen species presence in the Pacific Northwest, USA, and nest sites for cavity nesting birds in the Uinta Mountains, Utah, USA. We observed high classification accuracy in all applications as measured by cross-validation and, in the case of the lichen data, by independent test data, when comparing RF to other common classification methods. We also observed that the variables that RF identified as most important for classifying invasive plant species coincided with expectations based on the literature. ?? 2007 by the Ecological Society of America.

Sequence-structure relationship study in all-α transmembrane proteins using an unsupervised learning approach.

PubMed

Esque, Jérémy; Urbain, Aurélie; Etchebest, Catherine; de Brevern, Alexandre G

2015-11-01

Transmembrane proteins (TMPs) are major drug targets, but the knowledge of their precise topology structure remains highly limited compared with globular proteins. In spite of the difficulties in obtaining their structures, an important effort has been made these last years to increase their number from an experimental and computational point of view. In view of this emerging challenge, the development of computational methods to extract knowledge from these data is crucial for the better understanding of their functions and in improving the quality of structural models. Here, we revisit an efficient unsupervised learning procedure, called Hybrid Protein Model (HPM), which is applied to the analysis of transmembrane proteins belonging to the all-α structural class. HPM method is an original classification procedure that efficiently combines sequence and structure learning. The procedure was initially applied to the analysis of globular proteins. In the present case, HPM classifies a set of overlapping protein fragments, extracted from a non-redundant databank of TMP 3D structure. After fine-tuning of the learning parameters, the optimal classification results in 65 clusters. They represent at best similar relationships between sequence and local structure properties of TMPs. Interestingly, HPM distinguishes among the resulting clusters two helical regions with distinct hydrophobic patterns. This underlines the complexity of the topology of these proteins. The HPM classification enlightens unusual relationship between amino acids in TMP fragments, which can be useful to elaborate new amino acids substitution matrices. Finally, two challenging applications are described: the first one aims at annotating protein functions (channel or not), the second one intends to assess the quality of the structures (X-ray or models) via a new scoring function deduced from the HPM classification.

Application of satellite data and LARS's data processing techniques to mapping vegetation of the Dismal Swamp. M.S. Thesis - Old Dominion Univ.

NASA Technical Reports Server (NTRS)

Messmore, J. A.

1976-01-01

The feasibility of using digital satellite imagery and automatic data processing techniques as a means of mapping swamp forest vegetation was considered, using multispectral scanner data acquired by the LANDSAT-1 satellite. The site for this investigation was the Dismal Swamp, a 210,000 acre swamp forest located south of Suffolk, Va. on the Virginia-North Carolina border. Two basic classification strategies were employed. The initial classification utilized unsupervised techniques which produced a map of the swamp indicating the distribution of thirteen forest spectral classes. These classes were later combined into three informational categories: Atlantic white cedar (Chamaecyparis thyoides), Loblolly pine (Pinus taeda), and deciduous forest. The subsequent classification employed supervised techniques which mapped Atlantic white cedar, Loblolly pine, deciduous forest, water and agriculture within the study site. A classification accuracy of 82.5% was produced by unsupervised techniques compared with 89% accuracy using supervised techniques.

EL68D Wasteway Watershed Land-Cover Generation

USGS Publications Warehouse

Ruhl, Sheila; Usery, E. Lynn; Finn, Michael P.

2007-01-01

Classification of land cover from Landsat Enhanced Thematic Mapper Plus (ETM+) for the EL68D Wasteway Watershed in the State of Washington is documented. The procedures for classification include use of two ETM+ scenes in a simultaneous unsupervised classification process supported by extensive field data collection using Global Positioning System receivers and digital photos. The procedure resulted in a detailed classification at the individual crop species level.

Analysis of the changes in the tarcrete layer on the desert surface of Kuwait using satellite imagery and cell-based modeling

NASA Astrophysics Data System (ADS)

Al-Doasari, Ahmad E.

The 1991 Gulf War caused massive environmental damage in Kuwait. Deposition of oil and soot droplets from hundreds of burning oil-wells created a layer of tarcrete on the desert surface covering over 900 km2. This research investigates the spatial change in the tarcrete extent from 1991 to 1998 using Landsat Thematic Mapper (TM) imagery and statistical modeling techniques. The pixel structure of TM data allows the spatial analysis of the change in tarcrete extent to be conducted at the pixel (cell) level within a geographical information system (GIS). There are two components to this research. The first is a comparison of three remote sensing classification techniques used to map the tarcrete layer. The second is a spatial-temporal analysis and simulation of tarcrete changes through time. The analysis focuses on an area of 389 km2 located south of the Al-Burgan oil field. Five TM images acquired in 1991, 1993, 1994, 1995, and 1998 were geometrically and atmospherically corrected. These images were classified into six classes: oil lakes; heavy, intermediate, light, and traces of tarcrete; and sand. The classification methods tested were unsupervised, supervised, and neural network supervised (fuzzy ARTMAP). Field data of tarcrete characteristics were collected to support the classification process and to evaluate the classification accuracies. Overall, the neural network method is more accurate (60 percent) than the other two methods; both the unsupervised and the supervised classification accuracy assessments resulted in 46 percent accuracy. The five classifications were used in a lagged autologistic model to analyze the spatial changes of the tarcrete through time. The autologistic model correctly identified overall tarcrete contraction between 1991--1993 and 1995--1998. However, tarcrete contraction between 1993--1994 and 1994--1995 was less well marked, in part because of classification errors in the maps from these time periods. Initial simulations of tarcrete contraction with a cellular automaton model were not very successful. However, more accurate classifications could improve the simulations. This study illustrates how an empirical investigation using satellite images, field data, GIS, and spatial statistics can simulate dynamic land-cover change through the use of a discrete statistical and cellular automaton model.

Genetic Classification of Populations Using Supervised Learning

PubMed Central

Bridges, Michael; Heron, Elizabeth A.; O'Dushlaine, Colm; Segurado, Ricardo; Morris, Derek; Corvin, Aiden; Gill, Michael; Pinto, Carlos

2011-01-01

There are many instances in genetics in which we wish to determine whether two candidate populations are distinguishable on the basis of their genetic structure. Examples include populations which are geographically separated, case–control studies and quality control (when participants in a study have been genotyped at different laboratories). This latter application is of particular importance in the era of large scale genome wide association studies, when collections of individuals genotyped at different locations are being merged to provide increased power. The traditional method for detecting structure within a population is some form of exploratory technique such as principal components analysis. Such methods, which do not utilise our prior knowledge of the membership of the candidate populations. are termed unsupervised. Supervised methods, on the other hand are able to utilise this prior knowledge when it is available. In this paper we demonstrate that in such cases modern supervised approaches are a more appropriate tool for detecting genetic differences between populations. We apply two such methods, (neural networks and support vector machines) to the classification of three populations (two from Scotland and one from Bulgaria). The sensitivity exhibited by both these methods is considerably higher than that attained by principal components analysis and in fact comfortably exceeds a recently conjectured theoretical limit on the sensitivity of unsupervised methods. In particular, our methods can distinguish between the two Scottish populations, where principal components analysis cannot. We suggest, on the basis of our results that a supervised learning approach should be the method of choice when classifying individuals into pre-defined populations, particularly in quality control for large scale genome wide association studies. PMID:21589856

An Automatic Segmentation and Classification Framework Based on PCNN Model for Single Tooth in MicroCT Images.

PubMed

Wang, Liansheng; Li, Shusheng; Chen, Rongzhen; Liu, Sze-Yu; Chen, Jyh-Cheng

2016-01-01

Accurate segmentation and classification of different anatomical structures of teeth from medical images plays an essential role in many clinical applications. Usually, the anatomical structures of teeth are manually labelled by experienced clinical doctors, which is time consuming. However, automatic segmentation and classification is a challenging task because the anatomical structures and surroundings of the tooth in medical images are rather complex. Therefore, in this paper, we propose an effective framework which is designed to segment the tooth with a Selective Binary and Gaussian Filtering Regularized Level Set (GFRLS) method improved by fully utilizing three dimensional (3D) information, and classify the tooth by employing unsupervised learning Pulse Coupled Neural Networks (PCNN) model. In order to evaluate the proposed method, the experiments are conducted on the different datasets of mandibular molars and the experimental results show that our method can achieve better accuracy and robustness compared to other four state of the art clustering methods.

Design of partially supervised classifiers for multispectral image data

NASA Technical Reports Server (NTRS)

Jeon, Byeungwoo; Landgrebe, David

1993-01-01

A partially supervised classification problem is addressed, especially when the class definition and corresponding training samples are provided a priori only for just one particular class. In practical applications of pattern classification techniques, a frequently observed characteristic is the heavy, often nearly impossible requirements on representative prior statistical class characteristics of all classes in a given data set. Considering the effort in both time and man-power required to have a well-defined, exhaustive list of classes with a corresponding representative set of training samples, this 'partially' supervised capability would be very desirable, assuming adequate classifier performance can be obtained. Two different classification algorithms are developed to achieve simplicity in classifier design by reducing the requirement of prior statistical information without sacrificing significant classifying capability. The first one is based on optimal significance testing, where the optimal acceptance probability is estimated directly from the data set. In the second approach, the partially supervised classification is considered as a problem of unsupervised clustering with initially one known cluster or class. A weighted unsupervised clustering procedure is developed to automatically define other classes and estimate their class statistics. The operational simplicity thus realized should make these partially supervised classification schemes very viable tools in pattern classification.

Methods for automatic detection of artifacts in microelectrode recordings.

PubMed

Bakštein, Eduard; Sieger, Tomáš; Wild, Jiří; Novák, Daniel; Schneider, Jakub; Vostatek, Pavel; Urgošík, Dušan; Jech, Robert

2017-10-01

Extracellular microelectrode recording (MER) is a prominent technique for studies of extracellular single-unit neuronal activity. In order to achieve robust results in more complex analysis pipelines, it is necessary to have high quality input data with a low amount of artifacts. We show that noise (mainly electromagnetic interference and motion artifacts) may affect more than 25% of the recording length in a clinical MER database. We present several methods for automatic detection of noise in MER signals, based on (i) unsupervised detection of stationary segments, (ii) large peaks in the power spectral density, and (iii) a classifier based on multiple time- and frequency-domain features. We evaluate the proposed methods on a manually annotated database of 5735 ten-second MER signals from 58 Parkinson's disease patients. The existing methods for artifact detection in single-channel MER that have been rigorously tested, are based on unsupervised change-point detection. We show on an extensive real MER database that the presented techniques are better suited for the task of artifact identification and achieve much better results. The best-performing classifiers (bagging and decision tree) achieved artifact classification accuracy of up to 89% on an unseen test set and outperformed the unsupervised techniques by 5-10%. This was close to the level of agreement among raters using manual annotation (93.5%). We conclude that the proposed methods are suitable for automatic MER denoising and may help in the efficient elimination of undesirable signal artifacts. Copyright © 2017 Elsevier B.V. All rights reserved.

Classification of highly unbalanced CYP450 data of drugs using cost sensitive machine learning techniques.

PubMed

Eitrich, T; Kless, A; Druska, C; Meyer, W; Grotendorst, J

2007-01-01

In this paper, we study the classifications of unbalanced data sets of drugs. As an example we chose a data set of 2D6 inhibitors of cytochrome P450. The human cytochrome P450 2D6 isoform plays a key role in the metabolism of many drugs in the preclinical drug discovery process. We have collected a data set from annotated public data and calculated physicochemical properties with chemoinformatics methods. On top of this data, we have built classifiers based on machine learning methods. Data sets with different class distributions lead to the effect that conventional machine learning methods are biased toward the larger class. To overcome this problem and to obtain sensitive but also accurate classifiers we combine machine learning and feature selection methods with techniques addressing the problem of unbalanced classification, such as oversampling and threshold moving. We have used our own implementation of a support vector machine algorithm as well as the maximum entropy method. Our feature selection is based on the unsupervised McCabe method. The classification results from our test set are compared structurally with compounds from the training set. We show that the applied algorithms enable the effective high throughput in silico classification of potential drug candidates.

Semi-supervised manifold learning with affinity regularization for Alzheimer's disease identification using positron emission tomography imaging.

PubMed

Lu, Shen; Xia, Yong; Cai, Tom Weidong; Feng, David Dagan

2015-01-01

Dementia, Alzheimer's disease (AD) in particular is a global problem and big threat to the aging population. An image based computer-aided dementia diagnosis method is needed to providing doctors help during medical image examination. Many machine learning based dementia classification methods using medical imaging have been proposed and most of them achieve accurate results. However, most of these methods make use of supervised learning requiring fully labeled image dataset, which usually is not practical in real clinical environment. Using large amount of unlabeled images can improve the dementia classification performance. In this study we propose a new semi-supervised dementia classification method based on random manifold learning with affinity regularization. Three groups of spatial features are extracted from positron emission tomography (PET) images to construct an unsupervised random forest which is then used to regularize the manifold learning objective function. The proposed method, stat-of-the-art Laplacian support vector machine (LapSVM) and supervised SVM are applied to classify AD and normal controls (NC). The experiment results show that learning with unlabeled images indeed improves the classification performance. And our method outperforms LapSVM on the same dataset.

An Extended Spectral-Spatial Classification Approach for Hyperspectral Data

NASA Astrophysics Data System (ADS)

Akbari, D.

2017-11-01

In this paper an extended classification approach for hyperspectral imagery based on both spectral and spatial information is proposed. The spatial information is obtained by an enhanced marker-based minimum spanning forest (MSF) algorithm. Three different methods of dimension reduction are first used to obtain the subspace of hyperspectral data: (1) unsupervised feature extraction methods including principal component analysis (PCA), independent component analysis (ICA), and minimum noise fraction (MNF); (2) supervised feature extraction including decision boundary feature extraction (DBFE), discriminate analysis feature extraction (DAFE), and nonparametric weighted feature extraction (NWFE); (3) genetic algorithm (GA). The spectral features obtained are then fed into the enhanced marker-based MSF classification algorithm. In the enhanced MSF algorithm, the markers are extracted from the classification maps obtained by both SVM and watershed segmentation algorithm. To evaluate the proposed approach, the Pavia University hyperspectral data is tested. Experimental results show that the proposed approach using GA achieves an approximately 8 % overall accuracy higher than the original MSF-based algorithm.

Transient classification in LIGO data using difference boosting neural network

NASA Astrophysics Data System (ADS)

Mukund, N.; Abraham, S.; Kandhasamy, S.; Mitra, S.; Philip, N. S.

2017-05-01

Detection and classification of transients in data from gravitational wave detectors are crucial for efficient searches for true astrophysical events and identification of noise sources. We present a hybrid method for classification of short duration transients seen in gravitational wave data using both supervised and unsupervised machine learning techniques. To train the classifiers, we use the relative wavelet energy and the corresponding entropy obtained by applying one-dimensional wavelet decomposition on the data. The prediction accuracy of the trained classifier on nine simulated classes of gravitational wave transients and also LIGO's sixth science run hardware injections are reported. Targeted searches for a couple of known classes of nonastrophysical signals in the first observational run of Advanced LIGO data are also presented. The ability to accurately identify transient classes using minimal training samples makes the proposed method a useful tool for LIGO detector characterization as well as searches for short duration gravitational wave signals.

Automated unsupervised multi-parametric classification of adipose tissue depots in skeletal muscle

PubMed Central

Valentinitsch, Alexander; Karampinos, Dimitrios C.; Alizai, Hamza; Subburaj, Karupppasamy; Kumar, Deepak; Link, Thomas M.; Majumdar, Sharmila

2012-01-01

Purpose To introduce and validate an automated unsupervised multi-parametric method for segmentation of the subcutaneous fat and muscle regions in order to determine subcutaneous adipose tissue (SAT) and intermuscular adipose tissue (IMAT) areas based on data from a quantitative chemical shift-based water-fat separation approach. Materials and Methods Unsupervised standard k-means clustering was employed to define sets of similar features (k = 2) within the whole multi-modal image after the water-fat separation. The automated image processing chain was composed of three primary stages including tissue, muscle and bone region segmentation. The algorithm was applied on calf and thigh datasets to compute SAT and IMAT areas and was compared to a manual segmentation. Results The IMAT area using the automatic segmentation had excellent agreement with the IMAT area using the manual segmentation for all the cases in the thigh (R2: 0.96) and for cases with up to moderate IMAT area in the calf (R2: 0.92). The group with the highest grade of muscle fat infiltration in the calf had the highest error in the inner SAT contour calculation. Conclusion The proposed multi-parametric segmentation approach combined with quantitative water-fat imaging provides an accurate and reliable method for an automated calculation of the SAT and IMAT areas reducing considerably the total post-processing time. PMID:23097409

Mixtures of GAMs for habitat suitability analysis with overdispersed presence / absence data

PubMed Central

Pleydell, David R.J.; Chrétien, Stéphane

2009-01-01

A new approach to species distribution modelling based on unsupervised classification via a finite mixture of GAMs incorporating habitat suitability curves is proposed. A tailored EM algorithm is outlined for computing maximum likelihood estimates. Several submodels incorporating various parameter constraints are explored. Simulation studies confirm, that under certain constraints, the habitat suitability curves are recovered with good precision. The method is also applied to a set of real data concerning presence/absence of observable small mammal indices collected on the Tibetan plateau. The resulting classification was found to correspond to species-level differences in habitat preference described in previous ecological work. PMID:20401331

A Granular Self-Organizing Map for Clustering and Gene Selection in Microarray Data.

PubMed

Ray, Shubhra Sankar; Ganivada, Avatharam; Pal, Sankar K

2016-09-01

A new granular self-organizing map (GSOM) is developed by integrating the concept of a fuzzy rough set with the SOM. While training the GSOM, the weights of a winning neuron and the neighborhood neurons are updated through a modified learning procedure. The neighborhood is newly defined using the fuzzy rough sets. The clusters (granules) evolved by the GSOM are presented to a decision table as its decision classes. Based on the decision table, a method of gene selection is developed. The effectiveness of the GSOM is shown in both clustering samples and developing an unsupervised fuzzy rough feature selection (UFRFS) method for gene selection in microarray data. While the superior results of the GSOM, as compared with the related clustering methods, are provided in terms of β -index, DB-index, Dunn-index, and fuzzy rough entropy, the genes selected by the UFRFS are not only better in terms of classification accuracy and a feature evaluation index, but also statistically more significant than the related unsupervised methods. The C-codes of the GSOM and UFRFS are available online at http://avatharamg.webs.com/software-code.

Linear time relational prototype based learning.

PubMed

Gisbrecht, Andrej; Mokbel, Bassam; Schleif, Frank-Michael; Zhu, Xibin; Hammer, Barbara

2012-10-01

Prototype based learning offers an intuitive interface to inspect large quantities of electronic data in supervised or unsupervised settings. Recently, many techniques have been extended to data described by general dissimilarities rather than Euclidean vectors, so-called relational data settings. Unlike the Euclidean counterparts, the techniques have quadratic time complexity due to the underlying quadratic dissimilarity matrix. Thus, they are infeasible already for medium sized data sets. The contribution of this article is twofold: On the one hand we propose a novel supervised prototype based classification technique for dissimilarity data based on popular learning vector quantization (LVQ), on the other hand we transfer a linear time approximation technique, the Nyström approximation, to this algorithm and an unsupervised counterpart, the relational generative topographic mapping (GTM). This way, linear time and space methods result. We evaluate the techniques on three examples from the biomedical domain.

Predicting category intuitiveness with the rational model, the simplicity model, and the generalized context model.

PubMed

Pothos, Emmanuel M; Bailey, Todd M

2009-07-01

Naïve observers typically perceive some groupings for a set of stimuli as more intuitive than others. The problem of predicting category intuitiveness has been historically considered the remit of models of unsupervised categorization. In contrast, this article develops a measure of category intuitiveness from one of the most widely supported models of supervised categorization, the generalized context model (GCM). Considering different category assignments for a set of instances, the authors asked how well the GCM can predict the classification of each instance on the basis of all the other instances. The category assignment that results in the smallest prediction error is interpreted as the most intuitive for the GCM-the authors refer to this way of applying the GCM as "unsupervised GCM." The authors systematically compared predictions of category intuitiveness from the unsupervised GCM and two models of unsupervised categorization: the simplicity model and the rational model. The unsupervised GCM compared favorably with the simplicity model and the rational model. This success of the unsupervised GCM illustrates that the distinction between supervised and unsupervised categorization may need to be reconsidered. However, no model emerged as clearly superior, indicating that there is more work to be done in understanding and modeling category intuitiveness.

Gene expression-based molecular diagnostic system for malignant gliomas is superior to histological diagnosis.

PubMed

Shirahata, Mitsuaki; Iwao-Koizumi, Kyoko; Saito, Sakae; Ueno, Noriko; Oda, Masashi; Hashimoto, Nobuo; Takahashi, Jun A; Kato, Kikuya

2007-12-15

Current morphology-based glioma classification methods do not adequately reflect the complex biology of gliomas, thus limiting their prognostic ability. In this study, we focused on anaplastic oligodendroglioma and glioblastoma, which typically follow distinct clinical courses. Our goal was to construct a clinically useful molecular diagnostic system based on gene expression profiling. The expression of 3,456 genes in 32 patients, 12 and 20 of whom had prognostically distinct anaplastic oligodendroglioma and glioblastoma, respectively, was measured by PCR array. Next to unsupervised methods, we did supervised analysis using a weighted voting algorithm to construct a diagnostic system discriminating anaplastic oligodendroglioma from glioblastoma. The diagnostic accuracy of this system was evaluated by leave-one-out cross-validation. The clinical utility was tested on a microarray-based data set of 50 malignant gliomas from a previous study. Unsupervised analysis showed divergent global gene expression patterns between the two tumor classes. A supervised binary classification model showed 100% (95% confidence interval, 89.4-100%) diagnostic accuracy by leave-one-out cross-validation using 168 diagnostic genes. Applied to a gene expression data set from a previous study, our model correlated better with outcome than histologic diagnosis, and also displayed 96.6% (28 of 29) consistency with the molecular classification scheme used for these histologically controversial gliomas in the original article. Furthermore, we observed that histologically diagnosed glioblastoma samples that shared anaplastic oligodendroglioma molecular characteristics tended to be associated with longer survival. Our molecular diagnostic system showed reproducible clinical utility and prognostic ability superior to traditional histopathologic diagnosis for malignant glioma.

Evaluation of solar angle variation over digital processing of LANDSAT imagery. [Brazil

NASA Technical Reports Server (NTRS)

Parada, N. D. J. (Principal Investigator); Novo, E. M. L. M.

1984-01-01

The effects of the seasonal variation of illumination over digital processing of LANDSAT images are evaluated. Original images are transformed by means of digital filtering to enhance their spatial features. The resulting images are used to obtain an unsupervised classification of relief units. After defining relief classes, which are supposed to be spectrally different, topographic variables (declivity, altitude, relief range and slope length) are used to identify the true relief units existing on the ground. The samples are also clustered by means of an unsupervised classification option. The results obtained for each LANDSAT overpass are compared. Digital processing is highly affected by illumination geometry. There is no correspondence between relief units as defined by spectral features and those resulting from topographic features.

Eigenvalue-eigenvector decomposition (EED) analysis of dissimilarity and covariance matrix obtained from total synchronous fluorescence spectral (TSFS) data sets of herbal preparations: Optimizing the classification approach

NASA Astrophysics Data System (ADS)

Tarai, Madhumita; Kumar, Keshav; Divya, O.; Bairi, Partha; Mishra, Kishor Kumar; Mishra, Ashok Kumar

2017-09-01

The present work compares the dissimilarity and covariance based unsupervised chemometric classification approaches by taking the total synchronous fluorescence spectroscopy data sets acquired for the cumin and non-cumin based herbal preparations. The conventional decomposition method involves eigenvalue-eigenvector analysis of the covariance of the data set and finds the factors that can explain the overall major sources of variation present in the data set. The conventional approach does this irrespective of the fact that the samples belong to intrinsically different groups and hence leads to poor class separation. The present work shows that classification of such samples can be optimized by performing the eigenvalue-eigenvector decomposition on the pair-wise dissimilarity matrix.

Video mining using combinations of unsupervised and supervised learning techniques

NASA Astrophysics Data System (ADS)

Divakaran, Ajay; Miyahara, Koji; Peker, Kadir A.; Radhakrishnan, Regunathan; Xiong, Ziyou

2003-12-01

We discuss the meaning and significance of the video mining problem, and present our work on some aspects of video mining. A simple definition of video mining is unsupervised discovery of patterns in audio-visual content. Such purely unsupervised discovery is readily applicable to video surveillance as well as to consumer video browsing applications. We interpret video mining as content-adaptive or "blind" content processing, in which the first stage is content characterization and the second stage is event discovery based on the characterization obtained in stage 1. We discuss the target applications and find that using a purely unsupervised approach are too computationally complex to be implemented on our product platform. We then describe various combinations of unsupervised and supervised learning techniques that help discover patterns that are useful to the end-user of the application. We target consumer video browsing applications such as commercial message detection, sports highlights extraction etc. We employ both audio and video features. We find that supervised audio classification combined with unsupervised unusual event discovery enables accurate supervised detection of desired events. Our techniques are computationally simple and robust to common variations in production styles etc.

Globally maximizing, locally minimizing: unsupervised discriminant projection with applications to face and palm biometrics.

PubMed

Yang, Jian; Zhang, David; Yang, Jing-Yu; Niu, Ben

2007-04-01

This paper develops an unsupervised discriminant projection (UDP) technique for dimensionality reduction of high-dimensional data in small sample size cases. UDP can be seen as a linear approximation of a multimanifolds-based learning framework which takes into account both the local and nonlocal quantities. UDP characterizes the local scatter as well as the nonlocal scatter, seeking to find a projection that simultaneously maximizes the nonlocal scatter and minimizes the local scatter. This characteristic makes UDP more intuitive and more powerful than the most up-to-date method, Locality Preserving Projection (LPP), which considers only the local scatter for clustering or classification tasks. The proposed method is applied to face and palm biometrics and is examined using the Yale, FERET, and AR face image databases and the PolyU palmprint database. The experimental results show that UDP consistently outperforms LPP and PCA and outperforms LDA when the training sample size per class is small. This demonstrates that UDP is a good choice for real-world biometrics applications.

Multiresource analysis and information system concepts for incorporating LANDSAT and GIS technology into large area forest surveys. [South Carolina

NASA Technical Reports Server (NTRS)

Langley, P. G.

1981-01-01

A method of relating different classifications at each stage of a multistage, multiresource inventory using remotely sensed imagery is discussed. A class transformation matrix allowing the conversion of a set of proportions at one stage, to a set of proportions at the subsequent stage through use of a linear model, is described. The technique was tested by applying it to Kershaw County, South Carolina. Unsupervised LANDSAT spectral classifications were correlated with interpretations of land use aerial photography, the correlations employed to estimate land use classifications using the linear model, and the land use proportions used to stratify current annual increment (CAI) field plot data to obtain a total CAI for the county. The estimate differed by 1% from the published figure for land use. Potential sediment loss and a variety of land use classifications were also obtained.

Model-based classification of CPT data and automated lithostratigraphic mapping for high-resolution characterization of a heterogeneous sedimentary aquifer

PubMed Central

Mallants, Dirk; Batelaan, Okke; Gedeon, Matej; Huysmans, Marijke; Dassargues, Alain

2017-01-01

Cone penetration testing (CPT) is one of the most efficient and versatile methods currently available for geotechnical, lithostratigraphic and hydrogeological site characterization. Currently available methods for soil behaviour type classification (SBT) of CPT data however have severe limitations, often restricting their application to a local scale. For parameterization of regional groundwater flow or geotechnical models, and delineation of regional hydro- or lithostratigraphy, regional SBT classification would be very useful. This paper investigates the use of model-based clustering for SBT classification, and the influence of different clustering approaches on the properties and spatial distribution of the obtained soil classes. We additionally propose a methodology for automated lithostratigraphic mapping of regionally occurring sedimentary units using SBT classification. The methodology is applied to a large CPT dataset, covering a groundwater basin of ~60 km2 with predominantly unconsolidated sandy sediments in northern Belgium. Results show that the model-based approach is superior in detecting the true lithological classes when compared to more frequently applied unsupervised classification approaches or literature classification diagrams. We demonstrate that automated mapping of lithostratigraphic units using advanced SBT classification techniques can provide a large gain in efficiency, compared to more time-consuming manual approaches and yields at least equally accurate results. PMID:28467468

Model-based classification of CPT data and automated lithostratigraphic mapping for high-resolution characterization of a heterogeneous sedimentary aquifer.

PubMed

Rogiers, Bart; Mallants, Dirk; Batelaan, Okke; Gedeon, Matej; Huysmans, Marijke; Dassargues, Alain

2017-01-01

Cone penetration testing (CPT) is one of the most efficient and versatile methods currently available for geotechnical, lithostratigraphic and hydrogeological site characterization. Currently available methods for soil behaviour type classification (SBT) of CPT data however have severe limitations, often restricting their application to a local scale. For parameterization of regional groundwater flow or geotechnical models, and delineation of regional hydro- or lithostratigraphy, regional SBT classification would be very useful. This paper investigates the use of model-based clustering for SBT classification, and the influence of different clustering approaches on the properties and spatial distribution of the obtained soil classes. We additionally propose a methodology for automated lithostratigraphic mapping of regionally occurring sedimentary units using SBT classification. The methodology is applied to a large CPT dataset, covering a groundwater basin of ~60 km2 with predominantly unconsolidated sandy sediments in northern Belgium. Results show that the model-based approach is superior in detecting the true lithological classes when compared to more frequently applied unsupervised classification approaches or literature classification diagrams. We demonstrate that automated mapping of lithostratigraphic units using advanced SBT classification techniques can provide a large gain in efficiency, compared to more time-consuming manual approaches and yields at least equally accurate results.

An Evaluation of Feature Learning Methods for High Resolution Image Classification

NASA Astrophysics Data System (ADS)

Tokarczyk, P.; Montoya, J.; Schindler, K.

2012-07-01

Automatic image classification is one of the fundamental problems of remote sensing research. The classification problem is even more challenging in high-resolution images of urban areas, where the objects are small and heterogeneous. Two questions arise, namely which features to extract from the raw sensor data to capture the local radiometry and image structure at each pixel or segment, and which classification method to apply to the feature vectors. While classifiers are nowadays well understood, selecting the right features remains a largely empirical process. Here we concentrate on the features. Several methods are evaluated which allow one to learn suitable features from unlabelled image data by analysing the image statistics. In a comparative study, we evaluate unsupervised feature learning with different linear and non-linear learning methods, including principal component analysis (PCA) and deep belief networks (DBN). We also compare these automatically learned features with popular choices of ad-hoc features including raw intensity values, standard combinations like the NDVI, a few PCA channels, and texture filters. The comparison is done in a unified framework using the same images, the target classes, reference data and a Random Forest classifier.

Image quality classification for DR screening using deep learning.

PubMed

FengLi Yu; Jing Sun; Annan Li; Jun Cheng; Cheng Wan; Jiang Liu

2017-07-01

The quality of input images significantly affects the outcome of automated diabetic retinopathy (DR) screening systems. Unlike the previous methods that only consider simple low-level features such as hand-crafted geometric and structural features, in this paper we propose a novel method for retinal image quality classification (IQC) that performs computational algorithms imitating the working of the human visual system. The proposed algorithm combines unsupervised features from saliency map and supervised features coming from convolutional neural networks (CNN), which are fed to an SVM to automatically detect high quality vs poor quality retinal fundus images. We demonstrate the superior performance of our proposed algorithm on a large retinal fundus image dataset and the method could achieve higher accuracy than other methods. Although retinal images are used in this study, the methodology is applicable to the image quality assessment and enhancement of other types of medical images.

Unsupervised Classification of PolSAR Data Using a Scattering Similarity Measure Derived From a Geodesic Distance

NASA Astrophysics Data System (ADS)

Ratha, Debanshu; Bhattacharya, Avik; Frery, Alejandro C.

2018-01-01

In this letter, we propose a novel technique for obtaining scattering components from Polarimetric Synthetic Aperture Radar (PolSAR) data using the geodesic distance on the unit sphere. This geodesic distance is obtained between an elementary target and the observed Kennaugh matrix, and it is further utilized to compute a similarity measure between scattering mechanisms. The normalized similarity measure for each elementary target is then modulated with the total scattering power (Span). This measure is used to categorize pixels into three categories i.e. odd-bounce, double-bounce and volume, depending on which of the above scattering mechanisms dominate. Then the maximum likelihood classifier of [J.-S. Lee, M. R. Grunes, E. Pottier, and L. Ferro-Famil, Unsupervised terrain classification preserving polarimetric scattering characteristics, IEEE Trans. Geos. Rem. Sens., vol. 42, no. 4, pp. 722731, April 2004.] based on the complex Wishart distribution is iteratively used for each category. Dominant scattering mechanisms are thus preserved in this classification scheme. We show results for L-band AIRSAR and ALOS-2 datasets acquired over San Francisco and Mumbai, respectively. The scattering mechanisms are better preserved using the proposed methodology than the unsupervised classification results using the Freeman-Durden scattering powers on an orientation angle (OA) corrected PolSAR image. Furthermore, (1) the scattering similarity is a completely non-negative quantity unlike the negative powers that might occur in double- bounce and odd-bounce scattering component under Freeman Durden decomposition (FDD), and (2) the methodology can be extended to more canonical targets as well as for bistatic scattering.

Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes.

PubMed

Cannistraci, Carlo Vittorio; Ravasi, Timothy; Montevecchi, Franco Maria; Ideker, Trey; Alessio, Massimo

2010-09-15

Nonlinear small datasets, which are characterized by low numbers of samples and very high numbers of measures, occur frequently in computational biology, and pose problems in their investigation. Unsupervised hybrid-two-phase (H2P) procedures-specifically dimension reduction (DR), coupled with clustering-provide valuable assistance, not only for unsupervised data classification, but also for visualization of the patterns hidden in high-dimensional feature space. 'Minimum Curvilinearity' (MC) is a principle that-for small datasets-suggests the approximation of curvilinear sample distances in the feature space by pair-wise distances over their minimum spanning tree (MST), and thus avoids the introduction of any tuning parameter. MC is used to design two novel forms of nonlinear machine learning (NML): Minimum Curvilinear embedding (MCE) for DR, and Minimum Curvilinear affinity propagation (MCAP) for clustering. Compared with several other unsupervised and supervised algorithms, MCE and MCAP, whether individually or combined in H2P, overcome the limits of classical approaches. High performance was attained in the visualization and classification of: (i) pain patients (proteomic measurements) in peripheral neuropathy; (ii) human organ tissues (genomic transcription factor measurements) on the basis of their embryological origin. MC provides a valuable framework to estimate nonlinear distances in small datasets. Its extension to large datasets is prefigured for novel NMLs. Classification of neuropathic pain by proteomic profiles offers new insights for future molecular and systems biology characterization of pain. Improvements in tissue embryological classification refine results obtained in an earlier study, and suggest a possible reinterpretation of skin attribution as mesodermal. https://sites.google.com/site/carlovittoriocannistraci/home.

Unsupervised identification of cone photoreceptors in non-confocal adaptive optics scanning light ophthalmoscope images.

PubMed

Bergeles, Christos; Dubis, Adam M; Davidson, Benjamin; Kasilian, Melissa; Kalitzeos, Angelos; Carroll, Joseph; Dubra, Alfredo; Michaelides, Michel; Ourselin, Sebastien

2017-06-01

Precise measurements of photoreceptor numerosity and spatial arrangement are promising biomarkers for the early detection of retinal pathologies and may be valuable in the evaluation of retinal therapies. Adaptive optics scanning light ophthalmoscopy (AOSLO) is a method of imaging that corrects for aberrations of the eye to acquire high-resolution images that reveal the photoreceptor mosaic. These images are typically graded manually by experienced observers, obviating the robust, large-scale use of the technology. This paper addresses unsupervised automated detection of cones in non-confocal, split-detection AOSLO images. Our algorithm leverages the appearance of split-detection images to create a cone model that is used for classification. Results show that it compares favorably to the state-of-the-art, both for images of healthy retinas and for images from patients affected by Stargardt disease. The algorithm presented also compares well to manual annotation while excelling in speed.

Eigenvalue-eigenvector decomposition (EED) analysis of dissimilarity and covariance matrix obtained from total synchronous fluorescence spectral (TSFS) data sets of herbal preparations: Optimizing the classification approach.

PubMed

Tarai, Madhumita; Kumar, Keshav; Divya, O; Bairi, Partha; Mishra, Kishor Kumar; Mishra, Ashok Kumar

2017-09-05

The present work compares the dissimilarity and covariance based unsupervised chemometric classification approaches by taking the total synchronous fluorescence spectroscopy data sets acquired for the cumin and non-cumin based herbal preparations. The conventional decomposition method involves eigenvalue-eigenvector analysis of the covariance of the data set and finds the factors that can explain the overall major sources of variation present in the data set. The conventional approach does this irrespective of the fact that the samples belong to intrinsically different groups and hence leads to poor class separation. The present work shows that classification of such samples can be optimized by performing the eigenvalue-eigenvector decomposition on the pair-wise dissimilarity matrix. Copyright © 2017 Elsevier B.V. All rights reserved.

Exploring Genome-Wide Expression Profiles Using Machine Learning Techniques.

PubMed

Kebschull, Moritz; Papapanou, Panos N

2017-01-01

Although contemporary high-throughput -omics methods produce high-dimensional data, the resulting wealth of information is difficult to assess using traditional statistical procedures. Machine learning methods facilitate the detection of additional patterns, beyond the mere identification of lists of features that differ between groups.Here, we demonstrate the utility of (1) supervised classification algorithms in class validation, and (2) unsupervised clustering in class discovery. We use data from our previous work that described the transcriptional profiles of gingival tissue samples obtained from subjects suffering from chronic or aggressive periodontitis (1) to test whether the two diagnostic entities were also characterized by differences on the molecular level, and (2) to search for a novel, alternative classification of periodontitis based on the tissue transcriptomes.Using machine learning technology, we provide evidence for diagnostic imprecision in the currently accepted classification of periodontitis, and demonstrate that a novel, alternative classification based on differences in gingival tissue transcriptomes is feasible. The outlined procedures allow for the unbiased interrogation of high-dimensional datasets for characteristic underlying classes, and are applicable to a broad range of -omics data.

Classification of multispectral image data by the Binary Diamond neural network and by nonparametric, pixel-by-pixel methods

NASA Technical Reports Server (NTRS)

Salu, Yehuda; Tilton, James

1993-01-01

The classification of multispectral image data obtained from satellites has become an important tool for generating ground cover maps. This study deals with the application of nonparametric pixel-by-pixel classification methods in the classification of pixels, based on their multispectral data. A new neural network, the Binary Diamond, is introduced, and its performance is compared with a nearest neighbor algorithm and a back-propagation network. The Binary Diamond is a multilayer, feed-forward neural network, which learns from examples in unsupervised, 'one-shot' mode. It recruits its neurons according to the actual training set, as it learns. The comparisons of the algorithms were done by using a realistic data base, consisting of approximately 90,000 Landsat 4 Thematic Mapper pixels. The Binary Diamond and the nearest neighbor performances were close, with some advantages to the Binary Diamond. The performance of the back-propagation network lagged behind. An efficient nearest neighbor algorithm, the binned nearest neighbor, is described. Ways for improving the performances, such as merging categories, and analyzing nonboundary pixels, are addressed and evaluated.

On the convergence of nanotechnology and Big Data analysis for computer-aided diagnosis.

PubMed

Rodrigues, Jose F; Paulovich, Fernando V; de Oliveira, Maria Cf; de Oliveira, Osvaldo N

2016-04-01

An overview is provided of the challenges involved in building computer-aided diagnosis systems capable of precise medical diagnostics based on integration and interpretation of data from different sources and formats. The availability of massive amounts of data and computational methods associated with the Big Data paradigm has brought hope that such systems may soon be available in routine clinical practices, which is not the case today. We focus on visual and machine learning analysis of medical data acquired with varied nanotech-based techniques and on methods for Big Data infrastructure. Because diagnosis is essentially a classification task, we address the machine learning techniques with supervised and unsupervised classification, making a critical assessment of the progress already made in the medical field and the prospects for the near future. We also advocate that successful computer-aided diagnosis requires a merge of methods and concepts from nanotechnology and Big Data analysis.

A lexicon based method to search for extreme opinions

PubMed Central

Gamallo, Pablo

2018-01-01

Studies in sentiment analysis and opinion mining have been focused on many aspects related to opinions, namely polarity classification by making use of positive, negative or neutral values. However, most studies have overlooked the identification of extreme opinions (most negative and most positive opinions) in spite of their vast significance in many applications. We use an unsupervised approach to search for extreme opinions, which is based on the automatic construction of a new lexicon containing the most negative and most positive words. PMID:29799867

A lexicon based method to search for extreme opinions.

PubMed

Almatarneh, Sattam; Gamallo, Pablo

2018-01-01

Studies in sentiment analysis and opinion mining have been focused on many aspects related to opinions, namely polarity classification by making use of positive, negative or neutral values. However, most studies have overlooked the identification of extreme opinions (most negative and most positive opinions) in spite of their vast significance in many applications. We use an unsupervised approach to search for extreme opinions, which is based on the automatic construction of a new lexicon containing the most negative and most positive words.

Producing a satellite-derived map and modelling Spartina alterniflora expansion for Willapa Bay in Washington State

NASA Astrophysics Data System (ADS)

Berlin, Cynthia Jane

1998-12-01

This research addresses the identification of the areal extent of the intertidal wetlands of Willapa Bay, Washington, and the evaluation of the potential for exotic Spartina alterniflora (smooth cordgrass) expansion in the bay using a spatial geographic approach. It is hoped that the results will address not only the management needs of the study area but provide a research design that may be applied to studies of other coastal wetlands. Four satellite images, three Landsat Multi-Spectral (MSS) and one Thematic Mapper (TM), are used to derive a map showing areas of water, low, middle and high intertidal, and upland. Two multi-date remote sensing mapping techniques are assessed: a supervised classification using density-slicing and an unsupervised classification using an ISODATA algorithm. Statistical comparisons are made between the resultant derived maps and the U.S.G.S. topographic maps for the Willapa Bay area. The potential for Spartina expansion in the bay is assessed using a sigmoidal (logistic) growth model and a spatial modelling procedure for four possible growth scenarios: without management controls (Business-as-Usual), with moderate management controls (e.g. harvesting to eliminate seed setting), under a hypothetical increase in the growth rate that may reflect favorable environmental changes, and under a hypothetical decrease in the growth rate that may reflect aggressive management controls. Comparisons for the statistics of the two mapping techniques suggest that although the unsupervised classification method performed satisfactorily, the supervised classification (density-slicing) method provided more satisfactory results. Results from the modelling of potential Spartina expansion suggest that Spartina expansion will proceed rapidly for the Business-as-Usual and hypothetical increase in the growth rate scenario, and at a slower rate for the elimination of seed setting and hypothetical decrease in the growth rate scenarios, until all potential habitat is filled.

Discriminative clustering on manifold for adaptive transductive classification.

PubMed

Zhang, Zhao; Jia, Lei; Zhang, Min; Li, Bing; Zhang, Li; Li, Fanzhang

2017-10-01

In this paper, we mainly propose a novel adaptive transductive label propagation approach by joint discriminative clustering on manifolds for representing and classifying high-dimensional data. Our framework seamlessly combines the unsupervised manifold learning, discriminative clustering and adaptive classification into a unified model. Also, our method incorporates the adaptive graph weight construction with label propagation. Specifically, our method is capable of propagating label information using adaptive weights over low-dimensional manifold features, which is different from most existing studies that usually predict the labels and construct the weights in the original Euclidean space. For transductive classification by our formulation, we first perform the joint discriminative K-means clustering and manifold learning to capture the low-dimensional nonlinear manifolds. Then, we construct the adaptive weights over the learnt manifold features, where the adaptive weights are calculated through performing the joint minimization of the reconstruction errors over features and soft labels so that the graph weights can be joint-optimal for data representation and classification. Using the adaptive weights, we can easily estimate the unknown labels of samples. After that, our method returns the updated weights for further updating the manifold features. Extensive simulations on image classification and segmentation show that our proposed algorithm can deliver the state-of-the-art performance on several public datasets. Copyright © 2017 Elsevier Ltd. All rights reserved.

Surface mapping via unsupervised classification of remote sensing: application to MESSENGER/MASCS and DAWN/VIRS data.

NASA Astrophysics Data System (ADS)

D'Amore, M.; Le Scaon, R.; Helbert, J.; Maturilli, A.

2017-12-01

Machine-learning achieved unprecedented results in high-dimensional data processing tasks with wide applications in various fields. Due to the growing number of complex nonlinear systems that have to be investigated in science and the bare raw size of data nowadays available, ML offers the unique ability to extract knowledge, regardless the specific application field. Examples are image segmentation, supervised/unsupervised/ semi-supervised classification, feature extraction, data dimensionality analysis/reduction.The MASCS instrument has mapped Mercury surface in the 400-1145 nm wavelength range during orbital observations by the MESSENGER spacecraft. We have conducted k-means unsupervised hierarchical clustering to identify and characterize spectral units from MASCS observations. The results display a dichotomy: a polar and equatorial units, possibly linked to compositional differences or weathering due to irradiation. To explore possible relations between composition and spectral behavior, we have compared the spectral provinces with elemental abundance maps derived from MESSENGER's X-Ray Spectrometer (XRS).For the Vesta application on DAWN Visible and infrared spectrometer (VIR) data, we explored several Machine Learning techniques: image segmentation method, stream algorithm and hierarchical clustering.The algorithm successfully separates the Olivine outcrops around two craters on Vesta's surface [1]. New maps summarizing the spectral and chemical signature of the surface could be automatically produced.We conclude that instead of hand digging in data, scientist could choose a subset of algorithms with well known feature (i.e. efficacy on the particular problem, speed, accuracy) and focus their effort in understanding what important characteristic of the groups found in the data mean. [1] E Ammannito et al. "Olivine in an unexpected location on Vesta's surface". In: Nature 504.7478 (2013), pp. 122-125.

Deep Unfolding for Topic Models.

PubMed

Chien, Jen-Tzung; Lee, Chao-Hsi

2018-02-01

Deep unfolding provides an approach to integrate the probabilistic generative models and the deterministic neural networks. Such an approach is benefited by deep representation, easy interpretation, flexible learning and stochastic modeling. This study develops the unsupervised and supervised learning of deep unfolded topic models for document representation and classification. Conventionally, the unsupervised and supervised topic models are inferred via the variational inference algorithm where the model parameters are estimated by maximizing the lower bound of logarithm of marginal likelihood using input documents without and with class labels, respectively. The representation capability or classification accuracy is constrained by the variational lower bound and the tied model parameters across inference procedure. This paper aims to relax these constraints by directly maximizing the end performance criterion and continuously untying the parameters in learning process via deep unfolding inference (DUI). The inference procedure is treated as the layer-wise learning in a deep neural network. The end performance is iteratively improved by using the estimated topic parameters according to the exponentiated updates. Deep learning of topic models is therefore implemented through a back-propagation procedure. Experimental results show the merits of DUI with increasing number of layers compared with variational inference in unsupervised as well as supervised topic models.

Assessing Hurricane Katrina Damage to the Mississippi Gulf Coast Using IKONOS Imagery

NASA Technical Reports Server (NTRS)

Spruce, Joseph; McKellip, Rodney

2006-01-01

Hurricane Katrina hit southeastern Louisiana and the Mississippi Gulf Coast as a Category 3 hurricane with storm surges as high as 9 m. Katrina devastated several coastal towns by destroying or severely damaging hundreds of homes. Several Federal agencies are assessing storm impacts and assisting recovery using high-spatial-resolution remotely sensed data from satellite and airborne platforms. High-quality IKONOS satellite imagery was collected on September 2, 2005, over southwestern Mississippi. Pan-sharpened IKONOS multispectral data and ERDAS IMAGINE software were used to classify post-storm land cover for coastal Hancock and Harrison Counties. This classification included a storm debris category of interest to FEMA for disaster mitigation. The classification resulted from combining traditional unsupervised and supervised classification techniques. Higher spatial resolution aerial and handheld photography were used as reference data. Results suggest that traditional classification techniques and IKONOS data can map wood-dominated storm debris in open areas if relevant training areas are used to develop the unsupervised classification signatures. IKONOS data also enabled other hurricane damage assessment, such as flood-deposited mud on lawns and vegetation foliage loss from the storm. IKONOS data has also aided regional Katrina vegetation damage surveys from multidate Land Remote Sensing Satellite and Moderate Resolution Imaging Spectroradiometer data.

Classify epithelium-stroma in histopathological images based on deep transferable network.

PubMed

Yu, X; Zheng, H; Liu, C; Huang, Y; Ding, X

2018-04-20

Recently, the deep learning methods have received more attention in histopathological image analysis. However, the traditional deep learning methods assume that training data and test data have the same distributions, which causes certain limitations in real-world histopathological applications. However, it is costly to recollect a large amount of labeled histology data to train a new neural network for each specified image acquisition procedure even for similar tasks. In this paper, an unsupervised domain adaptation is introduced into a typical deep convolutional neural network (CNN) model to mitigate the repeating of the labels. The unsupervised domain adaptation is implemented by adding two regularisation terms, namely the feature-based adaptation and entropy minimisation, to the object function of a widely used CNN model called the AlexNet. Three independent public epithelium-stroma datasets were used to verify the proposed method. The experimental results have demonstrated that in the epithelium-stroma classification, the proposed method can achieve better performance than the commonly used deep learning methods and some existing deep domain adaptation methods. Therefore, the proposed method can be considered as a better option for the real-world applications of histopathological image analysis because there is no requirement for recollection of large-scale labeled data for every specified domain. © 2018 The Authors Journal of Microscopy © 2018 Royal Microscopical Society.

Unsupervised Learning in an Ensemble of Spiking Neural Networks Mediated by ITDP.

PubMed

Shim, Yoonsik; Philippides, Andrew; Staras, Kevin; Husbands, Phil

2016-10-01

We propose a biologically plausible architecture for unsupervised ensemble learning in a population of spiking neural network classifiers. A mixture of experts type organisation is shown to be effective, with the individual classifier outputs combined via a gating network whose operation is driven by input timing dependent plasticity (ITDP). The ITDP gating mechanism is based on recent experimental findings. An abstract, analytically tractable model of the ITDP driven ensemble architecture is derived from a logical model based on the probabilities of neural firing events. A detailed analysis of this model provides insights that allow it to be extended into a full, biologically plausible, computational implementation of the architecture which is demonstrated on a visual classification task. The extended model makes use of a style of spiking network, first introduced as a model of cortical microcircuits, that is capable of Bayesian inference, effectively performing expectation maximization. The unsupervised ensemble learning mechanism, based around such spiking expectation maximization (SEM) networks whose combined outputs are mediated by ITDP, is shown to perform the visual classification task well and to generalize to unseen data. The combined ensemble performance is significantly better than that of the individual classifiers, validating the ensemble architecture and learning mechanisms. The properties of the full model are analysed in the light of extensive experiments with the classification task, including an investigation into the influence of different input feature selection schemes and a comparison with a hierarchical STDP based ensemble architecture.

Unsupervised Learning in an Ensemble of Spiking Neural Networks Mediated by ITDP

PubMed Central

Staras, Kevin

2016-01-01

We propose a biologically plausible architecture for unsupervised ensemble learning in a population of spiking neural network classifiers. A mixture of experts type organisation is shown to be effective, with the individual classifier outputs combined via a gating network whose operation is driven by input timing dependent plasticity (ITDP). The ITDP gating mechanism is based on recent experimental findings. An abstract, analytically tractable model of the ITDP driven ensemble architecture is derived from a logical model based on the probabilities of neural firing events. A detailed analysis of this model provides insights that allow it to be extended into a full, biologically plausible, computational implementation of the architecture which is demonstrated on a visual classification task. The extended model makes use of a style of spiking network, first introduced as a model of cortical microcircuits, that is capable of Bayesian inference, effectively performing expectation maximization. The unsupervised ensemble learning mechanism, based around such spiking expectation maximization (SEM) networks whose combined outputs are mediated by ITDP, is shown to perform the visual classification task well and to generalize to unseen data. The combined ensemble performance is significantly better than that of the individual classifiers, validating the ensemble architecture and learning mechanisms. The properties of the full model are analysed in the light of extensive experiments with the classification task, including an investigation into the influence of different input feature selection schemes and a comparison with a hierarchical STDP based ensemble architecture. PMID:27760125

Evaluating the Visualization of What a Deep Neural Network Has Learned.

PubMed

Samek, Wojciech; Binder, Alexander; Montavon, Gregoire; Lapuschkin, Sebastian; Muller, Klaus-Robert

Deep neural networks (DNNs) have demonstrated impressive performance in complex machine learning tasks such as image classification or speech recognition. However, due to their multilayer nonlinear structure, they are not transparent, i.e., it is hard to grasp what makes them arrive at a particular classification or recognition decision, given a new unseen data sample. Recently, several approaches have been proposed enabling one to understand and interpret the reasoning embodied in a DNN for a single test image. These methods quantify the "importance" of individual pixels with respect to the classification decision and allow a visualization in terms of a heatmap in pixel/input space. While the usefulness of heatmaps can be judged subjectively by a human, an objective quality measure is missing. In this paper, we present a general methodology based on region perturbation for evaluating ordered collections of pixels such as heatmaps. We compare heatmaps computed by three different methods on the SUN397, ILSVRC2012, and MIT Places data sets. Our main result is that the recently proposed layer-wise relevance propagation algorithm qualitatively and quantitatively provides a better explanation of what made a DNN arrive at a particular classification decision than the sensitivity-based approach or the deconvolution method. We provide theoretical arguments to explain this result and discuss its practical implications. Finally, we investigate the use of heatmaps for unsupervised assessment of the neural network performance.Deep neural networks (DNNs) have demonstrated impressive performance in complex machine learning tasks such as image classification or speech recognition. However, due to their multilayer nonlinear structure, they are not transparent, i.e., it is hard to grasp what makes them arrive at a particular classification or recognition decision, given a new unseen data sample. Recently, several approaches have been proposed enabling one to understand and interpret the reasoning embodied in a DNN for a single test image. These methods quantify the "importance" of individual pixels with respect to the classification decision and allow a visualization in terms of a heatmap in pixel/input space. While the usefulness of heatmaps can be judged subjectively by a human, an objective quality measure is missing. In this paper, we present a general methodology based on region perturbation for evaluating ordered collections of pixels such as heatmaps. We compare heatmaps computed by three different methods on the SUN397, ILSVRC2012, and MIT Places data sets. Our main result is that the recently proposed layer-wise relevance propagation algorithm qualitatively and quantitatively provides a better explanation of what made a DNN arrive at a particular classification decision than the sensitivity-based approach or the deconvolution method. We provide theoretical arguments to explain this result and discuss its practical implications. Finally, we investigate the use of heatmaps for unsupervised assessment of the neural network performance.

Unsupervised active learning based on hierarchical graph-theoretic clustering.

PubMed

Hu, Weiming; Hu, Wei; Xie, Nianhua; Maybank, Steve

2009-10-01

Most existing active learning approaches are supervised. Supervised active learning has the following problems: inefficiency in dealing with the semantic gap between the distribution of samples in the feature space and their labels, lack of ability in selecting new samples that belong to new categories that have not yet appeared in the training samples, and lack of adaptability to changes in the semantic interpretation of sample categories. To tackle these problems, we propose an unsupervised active learning framework based on hierarchical graph-theoretic clustering. In the framework, two promising graph-theoretic clustering algorithms, namely, dominant-set clustering and spectral clustering, are combined in a hierarchical fashion. Our framework has some advantages, such as ease of implementation, flexibility in architecture, and adaptability to changes in the labeling. Evaluations on data sets for network intrusion detection, image classification, and video classification have demonstrated that our active learning framework can effectively reduce the workload of manual classification while maintaining a high accuracy of automatic classification. It is shown that, overall, our framework outperforms the support-vector-machine-based supervised active learning, particularly in terms of dealing much more efficiently with new samples whose categories have not yet appeared in the training samples.

An unsupervised classification method for inferring original case locations from low-resolution disease maps.

PubMed

Brownstein, John S; Cassa, Christopher A; Kohane, Isaac S; Mandl, Kenneth D

2006-12-08

Widespread availability of geographic information systems software has facilitated the use of disease mapping in academia, government and private sector. Maps that display the address of affected patients are often exchanged in public forums, and published in peer-reviewed journal articles. As previously reported, a search of figure legends in five major medical journals found 19 articles from 1994-2004 that identify over 19,000 patient addresses. In this report, a method is presented to evaluate whether patient privacy is being breached in the publication of low-resolution disease maps. To demonstrate the effect, a hypothetical low-resolution map of geocoded patient addresses was created and the accuracy with which patient addresses can be resolved is described. Through georeferencing and unsupervised classification of the original image, the method precisely re-identified 26% (144/550) of the patient addresses from a presentation quality map and 79% (432/550) from a publication quality map. For the presentation quality map, 99.8% of the addresses were within 70 meters (approximately one city block length) of the predicted patient location, 51.6% of addresses were identified within five buildings, 70.7% within ten buildings and 93% within twenty buildings. For the publication quality map, all addresses were within 14 meters and 11 buildings of the predicted patient location. This study demonstrates that lowering the resolution of a map displaying geocoded patient addresses does not sufficiently protect patient addresses from re-identification. Guidelines to protect patient privacy, including those of medical journals, should reflect policies that ensure privacy protection when spatial data are displayed or published.

Unsupervised Wishart Classfication of Wetlands in Newfoundland, Canada Using Polsar Data Based on Fisher Linear Discriminant Analysis

NASA Astrophysics Data System (ADS)

Mohammadimanesh, F.; Salehi, B.; Mahdianpari, M.; Homayouni, S.

2016-06-01

Polarimetric Synthetic Aperture Radar (PolSAR) imagery is a complex multi-dimensional dataset, which is an important source of information for various natural resources and environmental classification and monitoring applications. PolSAR imagery produces valuable information by observing scattering mechanisms from different natural and man-made objects. Land cover mapping using PolSAR data classification is one of the most important applications of SAR remote sensing earth observations, which have gained increasing attention in the recent years. However, one of the most challenging aspects of classification is selecting features with maximum discrimination capability. To address this challenge, a statistical approach based on the Fisher Linear Discriminant Analysis (FLDA) and the incorporation of physical interpretation of PolSAR data into classification is proposed in this paper. After pre-processing of PolSAR data, including the speckle reduction, the H/α classification is used in order to classify the basic scattering mechanisms. Then, a new method for feature weighting, based on the fusion of FLDA and physical interpretation, is implemented. This method proves to increase the classification accuracy as well as increasing between-class discrimination in the final Wishart classification. The proposed method was applied to a full polarimetric C-band RADARSAT-2 data set from Avalon area, Newfoundland and Labrador, Canada. This imagery has been acquired in June 2015, and covers various types of wetlands including bogs, fens, marshes and shallow water. The results were compared with the standard Wishart classification, and an improvement of about 20% was achieved in the overall accuracy. This method provides an opportunity for operational wetland classification in northern latitude with high accuracy using only SAR polarimetric data.

Space Object Classification Using Fused Features of Time Series Data

NASA Astrophysics Data System (ADS)

Jia, B.; Pham, K. D.; Blasch, E.; Shen, D.; Wang, Z.; Chen, G.

In this paper, a fused feature vector consisting of raw time series and texture feature information is proposed for space object classification. The time series data includes historical orbit trajectories and asteroid light curves. The texture feature is derived from recurrence plots using Gabor filters for both unsupervised learning and supervised learning algorithms. The simulation results show that the classification algorithms using the fused feature vector achieve better performance than those using raw time series or texture features only.

AUTOMATED UNSUPERVISED CLASSIFICATION OF THE SLOAN DIGITAL SKY SURVEY STELLAR SPECTRA USING k-MEANS CLUSTERING

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanchez Almeida, J.; Allende Prieto, C., E-mail: jos@iac.es, E-mail: callende@iac.es

2013-01-20

Large spectroscopic surveys require automated methods of analysis. This paper explores the use of k-means clustering as a tool for automated unsupervised classification of massive stellar spectral catalogs. The classification criteria are defined by the data and the algorithm, with no prior physical framework. We work with a representative set of stellar spectra associated with the Sloan Digital Sky Survey (SDSS) SEGUE and SEGUE-2 programs, which consists of 173,390 spectra from 3800 to 9200 A sampled on 3849 wavelengths. We classify the original spectra as well as the spectra with the continuum removed. The second set only contains spectral lines,more » and it is less dependent on uncertainties of the flux calibration. The classification of the spectra with continuum renders 16 major classes. Roughly speaking, stars are split according to their colors, with enough finesse to distinguish dwarfs from giants of the same effective temperature, but with difficulties to separate stars with different metallicities. There are classes corresponding to particular MK types, intrinsically blue stars, dust-reddened, stellar systems, and also classes collecting faulty spectra. Overall, there is no one-to-one correspondence between the classes we derive and the MK types. The classification of spectra without continuum renders 13 classes, the color separation is not so sharp, but it distinguishes stars of the same effective temperature and different metallicities. Some classes thus obtained present a fairly small range of physical parameters (200 K in effective temperature, 0.25 dex in surface gravity, and 0.35 dex in metallicity), so that the classification can be used to estimate the main physical parameters of some stars at a minimum computational cost. We also analyze the outliers of the classification. Most of them turn out to be failures of the reduction pipeline, but there are also high redshift QSOs, multiple stellar systems, dust-reddened stars, galaxies, and, finally, odd spectra whose nature we have not deciphered. The template spectra representative of the classes are publicly available in the online journal.« less

Selective Convolutional Descriptor Aggregation for Fine-Grained Image Retrieval.

PubMed

Wei, Xiu-Shen; Luo, Jian-Hao; Wu, Jianxin; Zhou, Zhi-Hua

2017-06-01

Deep convolutional neural network models pre-trained for the ImageNet classification task have been successfully adopted to tasks in other domains, such as texture description and object proposal generation, but these tasks require annotations for images in the new domain. In this paper, we focus on a novel and challenging task in the pure unsupervised setting: fine-grained image retrieval. Even with image labels, fine-grained images are difficult to classify, letting alone the unsupervised retrieval task. We propose the selective convolutional descriptor aggregation (SCDA) method. The SCDA first localizes the main object in fine-grained images, a step that discards the noisy background and keeps useful deep descriptors. The selected descriptors are then aggregated and the dimensionality is reduced into a short feature vector using the best practices we found. The SCDA is unsupervised, using no image label or bounding box annotation. Experiments on six fine-grained data sets confirm the effectiveness of the SCDA for fine-grained image retrieval. Besides, visualization of the SCDA features shows that they correspond to visual attributes (even subtle ones), which might explain SCDA's high-mean average precision in fine-grained retrieval. Moreover, on general image retrieval data sets, the SCDA achieves comparable retrieval results with the state-of-the-art general image retrieval approaches.

High resolution mapping and classification of oyster habitats in nearshore Louisiana using sidescan sonar

USGS Publications Warehouse

Allen, Y.C.; Wilson, C.A.; Roberts, H.H.; Supan, J.

2005-01-01

Sidescan sonar holds great promise as a tool to quantitatively depict the distribution and extent of benthic habitats in Louisiana's turbid estuaries. In this study, we describe an effective protocol for acoustic sampling in this environment. We also compared three methods of classification in detail: mean-based thresholding, supervised, and unsupervised techniques to classify sidescan imagery into categories of mud and shell. Classification results were compared to ground truth results using quadrat and dredge sampling. Supervised classification gave the best overall result (kappa = 75%) when compared to quadrat results. Classification accuracy was less robust when compared to all dredge samples (kappa = 21-56%), but increased greatly (90-100%) when only dredge samples taken from acoustically homogeneous areas were considered. Sidescan sonar when combined with ground truth sampling at an appropriate scale can be effectively used to establish an accurate substrate base map for both research applications and shellfish management. The sidescan imagery presented here also provides, for the first time, a detailed presentation of oyster habitat patchiness and scale in a productive oyster growing area.

Unsupervised classification of major depression using functional connectivity MRI.

PubMed

Zeng, Ling-Li; Shen, Hui; Liu, Li; Hu, Dewen

2014-04-01

The current diagnosis of psychiatric disorders including major depressive disorder based largely on self-reported symptoms and clinical signs may be prone to patients' behaviors and psychiatrists' bias. This study aims at developing an unsupervised machine learning approach for the accurate identification of major depression based on single resting-state functional magnetic resonance imaging scans in the absence of clinical information. Twenty-four medication-naive patients with major depression and 29 demographically similar healthy individuals underwent resting-state functional magnetic resonance imaging. We first clustered the voxels within the perigenual cingulate cortex into two subregions, a subgenual region and a pregenual region, according to their distinct resting-state functional connectivity patterns and showed that a maximum margin clustering-based unsupervised machine learning approach extracted sufficient information from the subgenual cingulate functional connectivity map to differentiate depressed patients from healthy controls with a group-level clustering consistency of 92.5% and an individual-level classification consistency of 92.5%. It was also revealed that the subgenual cingulate functional connectivity network with the highest discriminative power primarily included the ventrolateral and ventromedial prefrontal cortex, superior temporal gyri and limbic areas, indicating that these connections may play critical roles in the pathophysiology of major depression. The current study suggests that subgenual cingulate functional connectivity network signatures may provide promising objective biomarkers for the diagnosis of major depression and that maximum margin clustering-based unsupervised machine learning approaches may have the potential to inform clinical practice and aid in research on psychiatric disorders. Copyright © 2013 Wiley Periodicals, Inc.

Multilabel user classification using the community structure of online networks

PubMed Central

Papadopoulos, Symeon; Kompatsiaris, Yiannis

2017-01-01

We study the problem of semi-supervised, multi-label user classification of networked data in the online social platform setting. We propose a framework that combines unsupervised community extraction and supervised, community-based feature weighting before training a classifier. We introduce Approximate Regularized Commute-Time Embedding (ARCTE), an algorithm that projects the users of a social graph onto a latent space, but instead of packing the global structure into a matrix of predefined rank, as many spectral and neural representation learning methods do, it extracts local communities for all users in the graph in order to learn a sparse embedding. To this end, we employ an improvement of personalized PageRank algorithms for searching locally in each user’s graph structure. Then, we perform supervised community feature weighting in order to boost the importance of highly predictive communities. We assess our method performance on the problem of user classification by performing an extensive comparative study among various recent methods based on graph embeddings. The comparison shows that ARCTE significantly outperforms the competition in almost all cases, achieving up to 35% relative improvement compared to the second best competing method in terms of F1-score. PMID:28278242

Multilabel user classification using the community structure of online networks.

PubMed

Rizos, Georgios; Papadopoulos, Symeon; Kompatsiaris, Yiannis

2017-01-01

We study the problem of semi-supervised, multi-label user classification of networked data in the online social platform setting. We propose a framework that combines unsupervised community extraction and supervised, community-based feature weighting before training a classifier. We introduce Approximate Regularized Commute-Time Embedding (ARCTE), an algorithm that projects the users of a social graph onto a latent space, but instead of packing the global structure into a matrix of predefined rank, as many spectral and neural representation learning methods do, it extracts local communities for all users in the graph in order to learn a sparse embedding. To this end, we employ an improvement of personalized PageRank algorithms for searching locally in each user's graph structure. Then, we perform supervised community feature weighting in order to boost the importance of highly predictive communities. We assess our method performance on the problem of user classification by performing an extensive comparative study among various recent methods based on graph embeddings. The comparison shows that ARCTE significantly outperforms the competition in almost all cases, achieving up to 35% relative improvement compared to the second best competing method in terms of F1-score.

The evaluation of alternate methodologies for land cover classification in an urbanizing area

NASA Technical Reports Server (NTRS)

Smekofski, R. M.

1981-01-01

The usefulness of LANDSAT in classifying land cover and in identifying and classifying land use change was investigated using an urbanizing area as the study area. The question of what was the best technique for classification was the primary focus of the study. The many computer-assisted techniques available to analyze LANDSAT data were evaluated. Techniques of statistical training (polygons from CRT, unsupervised clustering, polygons from digitizer and binary masks) were tested with minimum distance to the mean, maximum likelihood and canonical analysis with minimum distance to the mean classifiers. The twelve output images were compared to photointerpreted samples, ground verified samples and a current land use data base. Results indicate that for a reconnaissance inventory, the unsupervised training with canonical analysis-minimum distance classifier is the most efficient. If more detailed ground truth and ground verification is available, the polygons from the digitizer training with the canonical analysis minimum distance is more accurate.

Aircraft MSS data registration and vegetation classification of wetland change detection

USGS Publications Warehouse

Christensen, E.J.; Jensen, J.R.; Ramsey, Elijah W.; Mackey, H.E.

1988-01-01

Portions of the Savannah River floodplain swamp were evaluated for vegetation change using high resolution (5a??6 m) aircraft multispectral scanner (MSS) data. Image distortion from aircraft movement prevented precise image-to-image registration in some areas. However, when small scenes were used (200-250 ha), a first-order linear transformation provided registration accuracies of less than or equal to one pixel. A larger area was registered using a piecewise linear method. Five major wetland classes were identified and evaluated for change. Phenological differences and the variable distribution of vegetation limited wetland type discrimination. Using unsupervised methods and ground-collected vegetation data, overall classification accuracies ranged from 84 per cent to 87 per cent for each scene. Results suggest that high-resolution aircraft MSS data can be precisely registered, if small areas are used, and that wetland vegetation change can be accurately detected and monitored.

Quasi-Supervised Scoring of Human Sleep in Polysomnograms Using Augmented Input Variables

PubMed Central

Yaghouby, Farid; Sunderam, Sridhar

2015-01-01

The limitations of manual sleep scoring make computerized methods highly desirable. Scoring errors can arise from human rater uncertainty or inter-rater variability. Sleep scoring algorithms either come as supervised classifiers that need scored samples of each state to be trained, or as unsupervised classifiers that use heuristics or structural clues in unscored data to define states. We propose a quasi-supervised classifier that models observations in an unsupervised manner but mimics a human rater wherever training scores are available. EEG, EMG, and EOG features were extracted in 30s epochs from human-scored polysomnograms recorded from 42 healthy human subjects (18 to 79 years) and archived in an anonymized, publicly accessible database. Hypnograms were modified so that: 1. Some states are scored but not others; 2. Samples of all states are scored but not for transitional epochs; and 3. Two raters with 67% agreement are simulated. A framework for quasi-supervised classification was devised in which unsupervised statistical models—specifically Gaussian mixtures and hidden Markov models—are estimated from unlabeled training data, but the training samples are augmented with variables whose values depend on available scores. Classifiers were fitted to signal features incorporating partial scores, and used to predict scores for complete recordings. Performance was assessed using Cohen's K statistic. The quasi-supervised classifier performed significantly better than an unsupervised model and sometimes as well as a completely supervised model despite receiving only partial scores. The quasi-supervised algorithm addresses the need for classifiers that mimic scoring patterns of human raters while compensating for their limitations. PMID:25679475

Quasi-supervised scoring of human sleep in polysomnograms using augmented input variables.

PubMed

Yaghouby, Farid; Sunderam, Sridhar

2015-04-01

The limitations of manual sleep scoring make computerized methods highly desirable. Scoring errors can arise from human rater uncertainty or inter-rater variability. Sleep scoring algorithms either come as supervised classifiers that need scored samples of each state to be trained, or as unsupervised classifiers that use heuristics or structural clues in unscored data to define states. We propose a quasi-supervised classifier that models observations in an unsupervised manner but mimics a human rater wherever training scores are available. EEG, EMG, and EOG features were extracted in 30s epochs from human-scored polysomnograms recorded from 42 healthy human subjects (18-79 years) and archived in an anonymized, publicly accessible database. Hypnograms were modified so that: 1. Some states are scored but not others; 2. Samples of all states are scored but not for transitional epochs; and 3. Two raters with 67% agreement are simulated. A framework for quasi-supervised classification was devised in which unsupervised statistical models-specifically Gaussian mixtures and hidden Markov models--are estimated from unlabeled training data, but the training samples are augmented with variables whose values depend on available scores. Classifiers were fitted to signal features incorporating partial scores, and used to predict scores for complete recordings. Performance was assessed using Cohen's Κ statistic. The quasi-supervised classifier performed significantly better than an unsupervised model and sometimes as well as a completely supervised model despite receiving only partial scores. The quasi-supervised algorithm addresses the need for classifiers that mimic scoring patterns of human raters while compensating for their limitations. Copyright © 2015 Elsevier Ltd. All rights reserved.

Heterogeneous activation of the TGFβ pathway in glioblastomas identified by gene expression-based classification using TGFβ-responsive genes

PubMed Central

Xu, Xie L; Kapoun, Ann M

2009-01-01

Background TGFβ has emerged as an attractive target for the therapeutic intervention of glioblastomas. Aberrant TGFβ overproduction in glioblastoma and other high-grade gliomas has been reported, however, to date, none of these reports has systematically examined the components of TGFβ signaling to gain a comprehensive view of TGFβ activation in large cohorts of human glioma patients. Methods TGFβ activation in mammalian cells leads to a transcriptional program that typically affects 5–10% of the genes in the genome. To systematically examine the status of TGFβ activation in high-grade glial tumors, we compiled a gene set of transcriptional response to TGFβ stimulation from tissue culture and in vivo animal studies. These genes were used to examine the status of TGFβ activation in high-grade gliomas including a large cohort of glioblastomas. Unsupervised and supervised classification analysis was performed in two independent, publicly available glioma microarray datasets. Results Unsupervised and supervised classification using the TGFβ-responsive gene list in two independent glial tumor gene expression data sets revealed various levels of TGFβ activation in these tumors. Among glioblastomas, one of the most devastating human cancers, two subgroups were identified that showed distinct TGFβ activation patterns as measured from transcriptional responses. Approximately 62% of glioblastoma samples analyzed showed strong TGFβ activation, while the rest showed a weak TGFβ transcriptional response. Conclusion Our findings suggest heterogeneous TGFβ activation in glioblastomas, which may cause potential differences in responses to anti-TGFβ therapies in these two distinct subgroups of glioblastomas patients. PMID:19192267

Biophysical control of intertidal benthic macroalgae revealed by high-frequency multispectral camera images

NASA Astrophysics Data System (ADS)

van der Wal, Daphne; van Dalen, Jeroen; Wielemaker-van den Dool, Annette; Dijkstra, Jasper T.; Ysebaert, Tom

2014-07-01

Intertidal benthic macroalgae are a biological quality indicator in estuaries and coasts. While remote sensing has been applied to quantify the spatial distribution of such macroalgae, it is generally not used for their monitoring. We examined the day-to-day and seasonal dynamics of macroalgal cover on a sandy intertidal flat using visible and near-infrared images from a time-lapse camera mounted on a tower. Benthic algae were identified using supervised, semi-supervised and unsupervised classification techniques, validated with monthly ground-truthing over one year. A supervised classification (based on maximum likelihood, using training areas identified in the field) performed best in discriminating between sediment, benthic diatom films and macroalgae, with highest spectral separability between macroalgae and diatoms in spring/summer. An automated unsupervised classification (based on the Normalised Differential Vegetation Index NDVI) allowed detection of daily changes in macroalgal coverage without the need for calibration. This method showed a bloom of macroalgae (filamentous green algae, Ulva sp.) in summer with > 60% cover, but with pronounced superimposed day-to-day variation in cover. Waves were a major factor in regulating macroalgal cover, but regrowth of the thalli after a summer storm was fast (2 weeks). Images and in situ data demonstrated that the protruding tubes of the polychaete Lanice conchilega facilitated both settlement (anchorage) and survival (resistance to waves) of the macroalgae. Thus, high-frequency, high resolution images revealed the mechanisms for regulating the dynamics in cover of the macroalgae and for their spatial structuring. Ramifications for the mode, timing, frequency and evaluation of monitoring macroalgae by field and remote sensing surveys are discussed.

Class imbalance in unsupervised change detection - A diagnostic analysis from urban remote sensing

NASA Astrophysics Data System (ADS)

Leichtle, Tobias; Geiß, Christian; Lakes, Tobia; Taubenböck, Hannes

2017-08-01

Automatic monitoring of changes on the Earth's surface is an intrinsic capability and simultaneously a persistent methodological challenge in remote sensing, especially regarding imagery with very-high spatial resolution (VHR) and complex urban environments. In order to enable a high level of automatization, the change detection problem is solved in an unsupervised way to alleviate efforts associated with collection of properly encoded prior knowledge. In this context, this paper systematically investigates the nature and effects of class distribution and class imbalance in an unsupervised binary change detection application based on VHR imagery over urban areas. For this purpose, a diagnostic framework for sensitivity analysis of a large range of possible degrees of class imbalance is presented, which is of particular importance with respect to unsupervised approaches where the content of images and thus the occurrence and the distribution of classes are generally unknown a priori. Furthermore, this framework can serve as a general technique to evaluate model transferability in any two-class classification problem. The applied change detection approach is based on object-based difference features calculated from VHR imagery and subsequent unsupervised two-class clustering using k-means, genetic k-means and self-organizing map (SOM) clustering. The results from two test sites with different structural characteristics of the built environment demonstrated that classification performance is generally worse in imbalanced class distribution settings while best results were reached in balanced or close to balanced situations. Regarding suitable accuracy measures for evaluating model performance in imbalanced settings, this study revealed that the Kappa statistics show significant response to class distribution while the true skill statistic was widely insensitive to imbalanced classes. In general, the genetic k-means clustering algorithm achieved the most robust results with respect to class imbalance while the SOM clustering exhibited a distinct optimization towards a balanced distribution of classes.

Mapping Of Lake Ice In Northern Europe Using Dual-Polarization RadarSAT-2 Data

NASA Astrophysics Data System (ADS)

Hindberg, Heidi; Malnes, Erik

2013-12-01

In this paper, we investigate the potential of including cross-polarization data in an unsupervised classification method based on SAR data to determine ice extent over lakes in Northern Europe. By introducing cross-pol data we can increase the separability between open water and ice, and we can decrease misclassifications where open water with waves is classified as ice. Cross-pol data also helps with labelling of the classes. However, cross-pol data can decrease the separability between the classes if the ice on the lake is very thin.

Intelligent condition monitoring method for bearing faults from highly compressed measurements using sparse over-complete features

NASA Astrophysics Data System (ADS)

Ahmed, H. O. A.; Wong, M. L. D.; Nandi, A. K.

2018-01-01

Condition classification of rolling element bearings in rotating machines is important to prevent the breakdown of industrial machinery. A considerable amount of literature has been published on bearing faults classification. These studies aim to determine automatically the current status of a roller element bearing. Of these studies, methods based on compressed sensing (CS) have received some attention recently due to their ability to allow one to sample below the Nyquist sampling rate. This technology has many possible uses in machine condition monitoring and has been investigated as a possible approach for fault detection and classification in the compressed domain, i.e., without reconstructing the original signal. However, previous CS based methods have been found to be too weak for highly compressed data. The present paper explores computationally, for the first time, the effects of sparse autoencoder based over-complete sparse representations on the classification performance of highly compressed measurements of bearing vibration signals. For this study, the CS method was used to produce highly compressed measurements of the original bearing dataset. Then, an effective deep neural network (DNN) with unsupervised feature learning algorithm based on sparse autoencoder is used for learning over-complete sparse representations of these compressed datasets. Finally, the fault classification is achieved using two stages, namely, pre-training classification based on stacked autoencoder and softmax regression layer form the deep net stage (the first stage), and re-training classification based on backpropagation (BP) algorithm forms the fine-tuning stage (the second stage). The experimental results show that the proposed method is able to achieve high levels of accuracy even with extremely compressed measurements compared with the existing techniques.

Robust Joint Graph Sparse Coding for Unsupervised Spectral Feature Selection.

PubMed

Zhu, Xiaofeng; Li, Xuelong; Zhang, Shichao; Ju, Chunhua; Wu, Xindong

2017-06-01

In this paper, we propose a new unsupervised spectral feature selection model by embedding a graph regularizer into the framework of joint sparse regression for preserving the local structures of data. To do this, we first extract the bases of training data by previous dictionary learning methods and, then, map original data into the basis space to generate their new representations, by proposing a novel joint graph sparse coding (JGSC) model. In JGSC, we first formulate its objective function by simultaneously taking subspace learning and joint sparse regression into account, then, design a new optimization solution to solve the resulting objective function, and further prove the convergence of the proposed solution. Furthermore, we extend JGSC to a robust JGSC (RJGSC) via replacing the least square loss function with a robust loss function, for achieving the same goals and also avoiding the impact of outliers. Finally, experimental results on real data sets showed that both JGSC and RJGSC outperformed the state-of-the-art algorithms in terms of k -nearest neighbor classification performance.

Sparse Coding for N-Gram Feature Extraction and Training for File Fragment Classification

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Felix; Quach, Tu-Thach; Wheeler, Jason

File fragment classification is an important step in the task of file carving in digital forensics. In file carving, files must be reconstructed based on their content as a result of their fragmented storage on disk or in memory. Existing methods for classification of file fragments typically use hand-engineered features such as byte histograms or entropy measures. In this paper, we propose an approach using sparse coding that enables automated feature extraction. Sparse coding, or sparse dictionary learning, is an unsupervised learning algorithm, and is capable of extracting features based simply on how well those features can be used tomore » reconstruct the original data. With respect to file fragments, we learn sparse dictionaries for n-grams, continuous sequences of bytes, of different sizes. These dictionaries may then be used to estimate n-gram frequencies for a given file fragment, but for significantly larger n-gram sizes than are typically found in existing methods which suffer from combinatorial explosion. To demonstrate the capability of our sparse coding approach, we used the resulting features to train standard classifiers such as support vector machines (SVMs) over multiple file types. Experimentally, we achieved significantly better classification results with respect to existing methods, especially when the features were used in supplement to existing hand-engineered features.« less

Sparse Coding for N-Gram Feature Extraction and Training for File Fragment Classification

DOE PAGES

Wang, Felix; Quach, Tu-Thach; Wheeler, Jason; ...

2018-04-05

File fragment classification is an important step in the task of file carving in digital forensics. In file carving, files must be reconstructed based on their content as a result of their fragmented storage on disk or in memory. Existing methods for classification of file fragments typically use hand-engineered features such as byte histograms or entropy measures. In this paper, we propose an approach using sparse coding that enables automated feature extraction. Sparse coding, or sparse dictionary learning, is an unsupervised learning algorithm, and is capable of extracting features based simply on how well those features can be used tomore » reconstruct the original data. With respect to file fragments, we learn sparse dictionaries for n-grams, continuous sequences of bytes, of different sizes. These dictionaries may then be used to estimate n-gram frequencies for a given file fragment, but for significantly larger n-gram sizes than are typically found in existing methods which suffer from combinatorial explosion. To demonstrate the capability of our sparse coding approach, we used the resulting features to train standard classifiers such as support vector machines (SVMs) over multiple file types. Experimentally, we achieved significantly better classification results with respect to existing methods, especially when the features were used in supplement to existing hand-engineered features.« less

Semi-Automated Classification of Seafloor Data Collected on the Delmarva Inner Shelf

NASA Astrophysics Data System (ADS)

Sweeney, E. M.; Pendleton, E. A.; Brothers, L. L.; Mahmud, A.; Thieler, E. R.

2017-12-01

We tested automated classification methods on acoustic bathymetry and backscatter data collected by the U.S. Geological Survey (USGS) and National Oceanic and Atmospheric Administration (NOAA) on the Delmarva inner continental shelf to efficiently and objectively identify sediment texture and geomorphology. Automated classification techniques are generally less subjective and take significantly less time than manual classification methods. We used a semi-automated process combining unsupervised and supervised classification techniques to characterize seafloor based on bathymetric slope and relative backscatter intensity. Statistical comparison of our automated classification results with those of a manual classification conducted on a subset of the acoustic imagery indicates that our automated method was highly accurate (95% total accuracy and 93% Kappa). Our methods resolve sediment ridges, zones of flat seafloor and areas of high and low backscatter. We compared our classification scheme with mean grain size statistics of samples collected in the study area and found that strong correlations between backscatter intensity and sediment texture exist. High backscatter zones are associated with the presence of gravel and shells mixed with sand, and low backscatter areas are primarily clean sand or sand mixed with mud. Slope classes further elucidate textural and geomorphologic differences in the seafloor, such that steep slopes (>0.35°) with high backscatter are most often associated with the updrift side of sand ridges and bedforms, whereas low slope with high backscatter correspond to coarse lag or shell deposits. Low backscatter and high slopes are most often found on the downdrift side of ridges and bedforms, and low backscatter and low slopes identify swale areas and sand sheets. We found that poor acoustic data quality was the most significant cause of inaccurate classification results, which required additional user input to mitigate. Our method worked well along the primarily sandy Delmarva inner continental shelf, and outlines a method that can be used to efficiently and consistently produce surficial geologic interpretations of the seafloor from ground-truthed geophysical or hydrographic data.

Unsupervised classification of Space Acceleration Measurement System (SAMS) data using ART2-A

NASA Technical Reports Server (NTRS)

Smith, A. D.; Sinha, A.

1999-01-01

The Space Acceleration Measurement System (SAMS) has been developed by NASA to monitor the microgravity acceleration environment aboard the space shuttle. The amount of data collected by a SAMS unit during a shuttle mission is in the several gigabytes range. Adaptive Resonance Theory 2-A (ART2-A), an unsupervised neural network, has been used to cluster these data and to develop cause and effect relationships among disturbances and the acceleration environment. Using input patterns formed on the basis of power spectral densities (psd), data collected from two missions, STS-050 and STS-057, have been clustered.

Do deep convolutional neural networks really need to be deep when applied for remote scene classification?

NASA Astrophysics Data System (ADS)

Luo, Chang; Wang, Jie; Feng, Gang; Xu, Suhui; Wang, Shiqiang

2017-10-01

Deep convolutional neural networks (CNNs) have been widely used to obtain high-level representation in various computer vision tasks. However, for remote scene classification, there are not sufficient images to train a very deep CNN from scratch. From two viewpoints of generalization power, we propose two promising kinds of deep CNNs for remote scenes and try to find whether deep CNNs need to be deep for remote scene classification. First, we transfer successful pretrained deep CNNs to remote scenes based on the theory that depth of CNNs brings the generalization power by learning available hypothesis for finite data samples. Second, according to the opposite viewpoint that generalization power of deep CNNs comes from massive memorization and shallow CNNs with enough neural nodes have perfect finite sample expressivity, we design a lightweight deep CNN (LDCNN) for remote scene classification. With five well-known pretrained deep CNNs, experimental results on two independent remote-sensing datasets demonstrate that transferred deep CNNs can achieve state-of-the-art results in an unsupervised setting. However, because of its shallow architecture, LDCNN cannot obtain satisfactory performance, regardless of whether in an unsupervised, semisupervised, or supervised setting. CNNs really need depth to obtain general features for remote scenes. This paper also provides baseline for applying deep CNNs to other remote sensing tasks.

Classification by Using Multispectral Point Cloud Data

NASA Astrophysics Data System (ADS)

Liao, C. T.; Huang, H. H.

2012-07-01

Remote sensing images are generally recorded in two-dimensional format containing multispectral information. Also, the semantic information is clearly visualized, which ground features can be better recognized and classified via supervised or unsupervised classification methods easily. Nevertheless, the shortcomings of multispectral images are highly depending on light conditions, and classification results lack of three-dimensional semantic information. On the other hand, LiDAR has become a main technology for acquiring high accuracy point cloud data. The advantages of LiDAR are high data acquisition rate, independent of light conditions and can directly produce three-dimensional coordinates. However, comparing with multispectral images, the disadvantage is multispectral information shortage, which remains a challenge in ground feature classification through massive point cloud data. Consequently, by combining the advantages of both LiDAR and multispectral images, point cloud data with three-dimensional coordinates and multispectral information can produce a integrate solution for point cloud classification. Therefore, this research acquires visible light and near infrared images, via close range photogrammetry, by matching images automatically through free online service for multispectral point cloud generation. Then, one can use three-dimensional affine coordinate transformation to compare the data increment. At last, the given threshold of height and color information is set as threshold in classification.

Automatic cloud coverage assessment of Formosat-2 image

NASA Astrophysics Data System (ADS)

Hsu, Kuo-Hsien

2011-11-01

Formosat-2 satellite equips with the high-spatial-resolution (2m ground sampling distance) remote sensing instrument. It has been being operated on the daily-revisiting mission orbit by National Space organization (NSPO) of Taiwan since May 21 2004. NSPO has also serving as one of the ground receiving stations for daily processing the received Formosat- 2 images. The current cloud coverage assessment of Formosat-2 image for NSPO Image Processing System generally consists of two major steps. Firstly, an un-supervised K-means method is used for automatically estimating the cloud statistic of Formosat-2 image. Secondly, manual estimation of cloud coverage from Formosat-2 image is processed by manual examination. Apparently, a more accurate Automatic Cloud Coverage Assessment (ACCA) method certainly increases the efficiency of processing step 2 with a good prediction of cloud statistic. In this paper, mainly based on the research results from Chang et al, Irish, and Gotoh, we propose a modified Formosat-2 ACCA method which considered pre-processing and post-processing analysis. For pre-processing analysis, cloud statistic is determined by using un-supervised K-means classification, Sobel's method, Otsu's method, non-cloudy pixels reexamination, and cross-band filter method. Box-Counting fractal method is considered as a post-processing tool to double check the results of pre-processing analysis for increasing the efficiency of manual examination.

Non-negative matrix factorisation methods for the spectral decomposition of MRS data from human brain tumours

PubMed Central

2012-01-01

Background In-vivo single voxel proton magnetic resonance spectroscopy (SV 1H-MRS), coupled with supervised pattern recognition (PR) methods, has been widely used in clinical studies of discrimination of brain tumour types and follow-up of patients bearing abnormal brain masses. SV 1H-MRS provides useful biochemical information about the metabolic state of tumours and can be performed at short (< 45 ms) or long (> 45 ms) echo time (TE), each with particular advantages. Short-TE spectra are more adequate for detecting lipids, while the long-TE provides a much flatter signal baseline in between peaks but also negative signals for metabolites such as lactate. Both, lipids and lactate, are respectively indicative of specific metabolic processes taking place. Ideally, the information provided by both TE should be of use for clinical purposes. In this study, we characterise the performance of a range of Non-negative Matrix Factorisation (NMF) methods in two respects: first, to derive sources correlated with the mean spectra of known tissue types (tumours and normal tissue); second, taking the best performing NMF method for source separation, we compare its accuracy for class assignment when using the mixing matrix directly as a basis for classification, as against using the method for dimensionality reduction (DR). For this, we used SV 1H-MRS data with positive and negative peaks, from a widely tested SV 1H-MRS human brain tumour database. Results The results reported in this paper reveal the advantage of using a recently described variant of NMF, namely Convex-NMF, as an unsupervised method of source extraction from SV1H-MRS. Most of the sources extracted in our experiments closely correspond to the mean spectra of some of the analysed tumour types. This similarity allows accurate diagnostic predictions to be made both in fully unsupervised mode and using Convex-NMF as a DR step previous to standard supervised classification. The obtained results are comparable to, or more accurate than those obtained with supervised techniques. Conclusions The unsupervised properties of Convex-NMF place this approach one step ahead of classical label-requiring supervised methods for the discrimination of brain tumour types, as it accounts for their increasingly recognised molecular subtype heterogeneity. The application of Convex-NMF in computer assisted decision support systems is expected to facilitate further improvements in the uptake of MRS-derived information by clinicians. PMID:22401579

Identifying quantum phase transitions with adversarial neural networks

NASA Astrophysics Data System (ADS)

Huembeli, Patrick; Dauphin, Alexandre; Wittek, Peter

2018-04-01

The identification of phases of matter is a challenging task, especially in quantum mechanics, where the complexity of the ground state appears to grow exponentially with the size of the system. Traditionally, physicists have to identify the relevant order parameters for the classification of the different phases. We here follow a radically different approach: we address this problem with a state-of-the-art deep learning technique, adversarial domain adaptation. We derive the phase diagram of the whole parameter space starting from a fixed and known subspace using unsupervised learning. This method has the advantage that the input of the algorithm can be directly the ground state without any ad hoc feature engineering. Furthermore, the dimension of the parameter space is unrestricted. More specifically, the input data set contains both labeled and unlabeled data instances. The first kind is a system that admits an accurate analytical or numerical solution, and one can recover its phase diagram. The second type is the physical system with an unknown phase diagram. Adversarial domain adaptation uses both types of data to create invariant feature extracting layers in a deep learning architecture. Once these layers are trained, we can attach an unsupervised learner to the network to find phase transitions. We show the success of this technique by applying it on several paradigmatic models: the Ising model with different temperatures, the Bose-Hubbard model, and the Su-Schrieffer-Heeger model with disorder. The method finds unknown transitions successfully and predicts transition points in close agreement with standard methods. This study opens the door to the classification of physical systems where the phase boundaries are complex such as the many-body localization problem or the Bose glass phase.

Comparison of Unsupervised Vegetation Classification Methods from Vhr Images after Shadows Removal by Innovative Algorithms

NASA Astrophysics Data System (ADS)

Movia, A.; Beinat, A.; Crosilla, F.

2015-04-01

The recognition of vegetation by the analysis of very high resolution (VHR) aerial images provides meaningful information about environmental features; nevertheless, VHR images frequently contain shadows that generate significant problems for the classification of the image components and for the extraction of the needed information. The aim of this research is to classify, from VHR aerial images, vegetation involved in the balance process of the environmental biochemical cycle, and to discriminate it with respect to urban and agricultural features. Three classification algorithms have been experimented in order to better recognize vegetation, and compared to NDVI index; unfortunately all these methods are conditioned by the presence of shadows on the images. Literature presents several algorithms to detect and remove shadows in the scene: most of them are based on the RGB to HSI transformations. In this work some of them have been implemented and compared with one based on RGB bands. Successively, in order to remove shadows and restore brightness on the images, some innovative algorithms, based on Procrustes theory, have been implemented and applied. Among these, we evaluate the capability of the so called "not-centered oblique Procrustes" and "anisotropic Procrustes" methods to efficiently restore brightness with respect to a linear correlation correction based on the Cholesky decomposition. Some experimental results obtained by different classification methods after shadows removal carried out with the innovative algorithms are presented and discussed.

Detection of sunn pest-damaged wheat samples using visible/near-infrared spectroscopy based on pattern recognition.

PubMed

Basati, Zahra; Jamshidi, Bahareh; Rasekh, Mansour; Abbaspour-Gilandeh, Yousef

2018-05-30

The presence of sunn pest-damaged grains in wheat mass reduces the quality of flour and bread produced from it. Therefore, it is essential to assess the quality of the samples in collecting and storage centers of wheat and flour mills. In this research, the capability of visible/near-infrared (Vis/NIR) spectroscopy combined with pattern recognition methods was investigated for discrimination of wheat samples with different percentages of sunn pest-damaged. To this end, various samples belonging to five classes (healthy and 5%, 10%, 15% and 20% unhealthy) were analyzed using Vis/NIR spectroscopy (wavelength range of 350-1000 nm) based on both supervised and unsupervised pattern recognition methods. Principal component analysis (PCA) and hierarchical cluster analysis (HCA) as the unsupervised techniques and soft independent modeling of class analogies (SIMCA) and partial least squares-discriminant analysis (PLS-DA) as supervised methods were used. The results showed that Vis/NIR spectra of healthy samples were correctly clustered using both PCA and HCA. Due to the high overlapping between the four unhealthy classes (5%, 10%, 15% and 20%), it was not possible to discriminate all the unhealthy samples in individual classes. However, when considering only the two main categories of healthy and unhealthy, an acceptable degree of separation between the classes can be obtained after classification with supervised pattern recognition methods of SIMCA and PLS-DA. SIMCA based on PCA modeling correctly classified samples in two classes of healthy and unhealthy with classification accuracy of 100%. Moreover, the power of the wavelengths of 839 nm, 918 nm and 995 nm were more than other wavelengths to discriminate two classes of healthy and unhealthy. It was also concluded that PLS-DA provides excellent classification results of healthy and unhealthy samples (R 2  = 0.973 and RMSECV = 0.057). Therefore, Vis/NIR spectroscopy based on pattern recognition techniques can be useful for rapid distinguishing the healthy wheat samples from those damaged by sunn pest in the maintenance and processing centers. Copyright © 2018 Elsevier B.V. All rights reserved.

Unifying framework for multimodal brain MRI segmentation based on Hidden Markov Chains.

PubMed

Bricq, S; Collet, Ch; Armspach, J P

2008-12-01

In the frame of 3D medical imaging, accurate segmentation of multimodal brain MR images is of interest for many brain disorders. However, due to several factors such as noise, imaging artifacts, intrinsic tissue variation and partial volume effects, tissue classification remains a challenging task. In this paper, we present a unifying framework for unsupervised segmentation of multimodal brain MR images including partial volume effect, bias field correction, and information given by a probabilistic atlas. Here-proposed method takes into account neighborhood information using a Hidden Markov Chain (HMC) model. Due to the limited resolution of imaging devices, voxels may be composed of a mixture of different tissue types, this partial volume effect is included to achieve an accurate segmentation of brain tissues. Instead of assigning each voxel to a single tissue class (i.e., hard classification), we compute the relative amount of each pure tissue class in each voxel (mixture estimation). Further, a bias field estimation step is added to the proposed algorithm to correct intensity inhomogeneities. Furthermore, atlas priors were incorporated using probabilistic brain atlas containing prior expectations about the spatial localization of different tissue classes. This atlas is considered as a complementary sensor and the proposed method is extended to multimodal brain MRI without any user-tunable parameter (unsupervised algorithm). To validate this new unifying framework, we present experimental results on both synthetic and real brain images, for which the ground truth is available. Comparison with other often used techniques demonstrates the accuracy and the robustness of this new Markovian segmentation scheme.

A new tool for supervised classification of satellite images available on web servers: Google Maps as a case study

NASA Astrophysics Data System (ADS)

García-Flores, Agustín.; Paz-Gallardo, Abel; Plaza, Antonio; Li, Jun

2016-10-01

This paper describes a new web platform dedicated to the classification of satellite images called Hypergim. The current implementation of this platform enables users to perform classification of satellite images from any part of the world thanks to the worldwide maps provided by Google Maps. To perform this classification, Hypergim uses unsupervised algorithms like Isodata and K-means. Here, we present an extension of the original platform in which we adapt Hypergim in order to use supervised algorithms to improve the classification results. This involves a significant modification of the user interface, providing the user with a way to obtain samples of classes present in the images to use in the training phase of the classification process. Another main goal of this development is to improve the runtime of the image classification process. To achieve this goal, we use a parallel implementation of the Random Forest classification algorithm. This implementation is a modification of the well-known CURFIL software package. The use of this type of algorithms to perform image classification is widespread today thanks to its precision and ease of training. The actual implementation of Random Forest was developed using CUDA platform, which enables us to exploit the potential of several models of NVIDIA graphics processing units using them to execute general purpose computing tasks as image classification algorithms. As well as CUDA, we use other parallel libraries as Intel Boost, taking advantage of the multithreading capabilities of modern CPUs. To ensure the best possible results, the platform is deployed in a cluster of commodity graphics processing units (GPUs), so that multiple users can use the tool in a concurrent way. The experimental results indicate that this new algorithm widely outperform the previous unsupervised algorithms implemented in Hypergim, both in runtime as well as precision of the actual classification of the images.

Geological applications of machine learning on hyperspectral remote sensing data

NASA Astrophysics Data System (ADS)

Tse, C. H.; Li, Yi-liang; Lam, Edmund Y.

2015-02-01

The CRISM imaging spectrometer orbiting Mars has been producing a vast amount of data in the visible to infrared wavelengths in the form of hyperspectral data cubes. These data, compared with those obtained from previous remote sensing techniques, yield an unprecedented level of detailed spectral resolution in additional to an ever increasing level of spatial information. A major challenge brought about by the data is the burden of processing and interpreting these datasets and extract the relevant information from it. This research aims at approaching the challenge by exploring machine learning methods especially unsupervised learning to achieve cluster density estimation and classification, and ultimately devising an efficient means leading to identification of minerals. A set of software tools have been constructed by Python to access and experiment with CRISM hyperspectral cubes selected from two specific Mars locations. A machine learning pipeline is proposed and unsupervised learning methods were implemented onto pre-processed datasets. The resulting data clusters are compared with the published ASTER spectral library and browse data products from the Planetary Data System (PDS). The result demonstrated that this approach is capable of processing the huge amount of hyperspectral data and potentially providing guidance to scientists for more detailed studies.

Unsupervised Biomedical Named Entity Recognition: Experiments with Clinical and Biological Texts

PubMed Central

Zhang, Shaodian; Elhadad, Nóemie

2013-01-01

Named entity recognition is a crucial component of biomedical natural language processing, enabling information extraction and ultimately reasoning over and knowledge discovery from text. Much progress has been made in the design of rule-based and supervised tools, but they are often genre and task dependent. As such, adapting them to different genres of text or identifying new types of entities requires major effort in re-annotation or rule development. In this paper, we propose an unsupervised approach to extracting named entities from biomedical text. We describe a stepwise solution to tackle the challenges of entity boundary detection and entity type classification without relying on any handcrafted rules, heuristics, or annotated data. A noun phrase chunker followed by a filter based on inverse document frequency extracts candidate entities from free text. Classification of candidate entities into categories of interest is carried out by leveraging principles from distributional semantics. Experiments show that our system, especially the entity classification step, yields competitive results on two popular biomedical datasets of clinical notes and biological literature, and outperforms a baseline dictionary match approach. Detailed error analysis provides a road map for future work. PMID:23954592

A recurrent neural network for classification of unevenly sampled variable stars

NASA Astrophysics Data System (ADS)

Naul, Brett; Bloom, Joshua S.; Pérez, Fernando; van der Walt, Stéfan

2018-02-01

Astronomical surveys of celestial sources produce streams of noisy time series measuring flux versus time (`light curves'). Unlike in many other physical domains, however, large (and source-specific) temporal gaps in data arise naturally due to intranight cadence choices as well as diurnal and seasonal constraints1-5. With nightly observations of millions of variable stars and transients from upcoming surveys4,6, efficient and accurate discovery and classification techniques on noisy, irregularly sampled data must be employed with minimal human-in-the-loop involvement. Machine learning for inference tasks on such data traditionally requires the laborious hand-coding of domain-specific numerical summaries of raw data (`features')7. Here, we present a novel unsupervised autoencoding recurrent neural network8 that makes explicit use of sampling times and known heteroskedastic noise properties. When trained on optical variable star catalogues, this network produces supervised classification models that rival other best-in-class approaches. We find that autoencoded features learned in one time-domain survey perform nearly as well when applied to another survey. These networks can continue to learn from new unlabelled observations and may be used in other unsupervised tasks, such as forecasting and anomaly detection.

EEG-based driver fatigue detection using hybrid deep generic model.

PubMed

Phyo Phyo San; Sai Ho Ling; Rifai Chai; Tran, Yvonne; Craig, Ashley; Hung Nguyen

2016-08-01

Classification of electroencephalography (EEG)-based application is one of the important process for biomedical engineering. Driver fatigue is a major case of traffic accidents worldwide and considered as a significant problem in recent decades. In this paper, a hybrid deep generic model (DGM)-based support vector machine is proposed for accurate detection of driver fatigue. Traditionally, a probabilistic DGM with deep architecture is quite good at learning invariant features, but it is not always optimal for classification due to its trainable parameters are in the middle layer. Alternatively, Support Vector Machine (SVM) itself is unable to learn complicated invariance, but produces good decision surface when applied to well-behaved features. Consolidating unsupervised high-level feature extraction techniques, DGM and SVM classification makes the integrated framework stronger and enhance mutually in feature extraction and classification. The experimental results showed that the proposed DBN-based driver fatigue monitoring system achieves better testing accuracy of 73.29 % with 91.10 % sensitivity and 55.48 % specificity. In short, the proposed hybrid DGM-based SVM is an effective method for the detection of driver fatigue in EEG.

Ensemble Semi-supervised Frame-work for Brain Magnetic Resonance Imaging Tissue Segmentation.

PubMed

Azmi, Reza; Pishgoo, Boshra; Norozi, Narges; Yeganeh, Samira

2013-04-01

Brain magnetic resonance images (MRIs) tissue segmentation is one of the most important parts of the clinical diagnostic tools. Pixel classification methods have been frequently used in the image segmentation with two supervised and unsupervised approaches up to now. Supervised segmentation methods lead to high accuracy, but they need a large amount of labeled data, which is hard, expensive, and slow to obtain. Moreover, they cannot use unlabeled data to train classifiers. On the other hand, unsupervised segmentation methods have no prior knowledge and lead to low level of performance. However, semi-supervised learning which uses a few labeled data together with a large amount of unlabeled data causes higher accuracy with less trouble. In this paper, we propose an ensemble semi-supervised frame-work for segmenting of brain magnetic resonance imaging (MRI) tissues that it has been used results of several semi-supervised classifiers simultaneously. Selecting appropriate classifiers has a significant role in the performance of this frame-work. Hence, in this paper, we present two semi-supervised algorithms expectation filtering maximization and MCo_Training that are improved versions of semi-supervised methods expectation maximization and Co_Training and increase segmentation accuracy. Afterward, we use these improved classifiers together with graph-based semi-supervised classifier as components of the ensemble frame-work. Experimental results show that performance of segmentation in this approach is higher than both supervised methods and the individual semi-supervised classifiers.

Integration of multispectral satellite and hyperspectral field data for aquatic macrophyte studies

NASA Astrophysics Data System (ADS)

John, C. M.; Kavya, N.

2014-11-01

Aquatic macrophytes (AM) can serve as useful indicators of water pollution along the littoral zones. The spectral signatures of various AM were investigated to determine whether species could be discriminated by remote sensing. In this study the spectral readings of different AM communities identified were done using the ASD Fieldspec® Hand Held spectro-radiometer in the wavelength range of 325-1075 nm. The collected specific reflectance spectra were applied to space borne multi-spectral remote sensing data from Worldview-2, acquired on 26th March 2011. The dimensionality reduction of the spectro-radiometric data was done using the technique principal components analysis (PCA). Out of the different PCA axes generated, 93.472 % variance of the spectra was explained by the first axis. The spectral derivative analysis was done to identify the wavelength where the greatest difference in reflectance is shown. The identified wavelengths are 510, 690, 720, 756, 806, 885, 907 and 923 nm. The output of PCA and derivative analysis were applied to Worldview-2 satellite data for spectral subsetting. The unsupervised classification was used to effectively classify the AM species using the different spectral subsets. The accuracy assessment of the results of the unsupervised classification and their comparison were done. The overall accuracy of the result of unsupervised classification using the band combinations Red-Edge, Green, Coastal blue & Red-edge, Yellow, Blue is 100%. The band combinations NIR-1, Green, Coastal blue & NIR-1, Yellow, Blue yielded an accuracy of 82.35 %. The existing vegetation indices and new hyper-spectral indices for the different type of AM communities were computed. Overall, results of this study suggest that high spectral and spatial resolution images provide useful information for natural resource managers especially with regard to the location identification and distribution mapping of macrophyte species and their communities.

Unsupervised Deep Hashing With Pseudo Labels for Scalable Image Retrieval.

PubMed

Zhang, Haofeng; Liu, Li; Long, Yang; Shao, Ling

2018-04-01

In order to achieve efficient similarity searching, hash functions are designed to encode images into low-dimensional binary codes with the constraint that similar features will have a short distance in the projected Hamming space. Recently, deep learning-based methods have become more popular, and outperform traditional non-deep methods. However, without label information, most state-of-the-art unsupervised deep hashing (DH) algorithms suffer from severe performance degradation for unsupervised scenarios. One of the main reasons is that the ad-hoc encoding process cannot properly capture the visual feature distribution. In this paper, we propose a novel unsupervised framework that has two main contributions: 1) we convert the unsupervised DH model into supervised by discovering pseudo labels; 2) the framework unifies likelihood maximization, mutual information maximization, and quantization error minimization so that the pseudo labels can maximumly preserve the distribution of visual features. Extensive experiments on three popular data sets demonstrate the advantages of the proposed method, which leads to significant performance improvement over the state-of-the-art unsupervised hashing algorithms.

Image processing developments and applications for water quality monitoring and trophic state determination

NASA Technical Reports Server (NTRS)

Blackwell, R. J.

1982-01-01

Remote sensing data analysis of water quality monitoring is evaluated. Data anaysis and image processing techniques are applied to LANDSAT remote sensing data to produce an effective operational tool for lake water quality surveying and monitoring. Digital image processing and analysis techniques were designed, developed, tested, and applied to LANDSAT multispectral scanner (MSS) data and conventional surface acquired data. Utilization of these techniques facilitates the surveying and monitoring of large numbers of lakes in an operational manner. Supervised multispectral classification, when used in conjunction with surface acquired water quality indicators, is used to characterize water body trophic status. Unsupervised multispectral classification, when interpreted by lake scientists familiar with a specific water body, yields classifications of equal validity with supervised methods and in a more cost effective manner. Image data base technology is used to great advantage in characterizing other contributing effects to water quality. These effects include drainage basin configuration, terrain slope, soil, precipitation and land cover characteristics.

Learning relevant features of data with multi-scale tensor networks

NASA Astrophysics Data System (ADS)

Miles Stoudenmire, E.

2018-07-01

Inspired by coarse-graining approaches used in physics, we show how similar algorithms can be adapted for data. The resulting algorithms are based on layered tree tensor networks and scale linearly with both the dimension of the input and the training set size. Computing most of the layers with an unsupervised algorithm, then optimizing just the top layer for supervised classification of the MNIST and fashion MNIST data sets gives very good results. We also discuss mixing a prior guess for supervised weights together with an unsupervised representation of the data, yielding a smaller number of features nevertheless able to give good performance.

Hyperspectral and Hypertemporal Longwave Infrared Data Characterization

NASA Astrophysics Data System (ADS)

Jeganathan, Nirmalan

The Army Research Lab conducted a persistent imaging experiment called the Spectral and Polarimetric Imagery Collection Experiment (SPICE) in 2012 and 2013 which focused on collecting and exploiting long wave infrared hyperspectral and polarimetric imagery. A part of this dataset was made for public release for research and development purposes. This thesis investigated the hyperspectral portion of this released dataset through data characterization and scene characterization of man-made and natural objects. First, the data were contrasted with MODerate resolution atmospheric TRANsmission (MODTRAN) results and found to be comparable. Instrument noise was characterized using an in-scene black panel, and was found to be comparable with the sensor manufacturer's specication. The temporal and spatial variation of certain objects in the scene were characterized. Temporal target detection was conducted on man-made objects in the scene using three target detection algorithms: spectral angle mapper (SAM), spectral matched lter (SMF) and adaptive coherence/cosine estimator (ACE). SMF produced the best results for detecting the targets when the training and testing data originated from different time periods, with a time index percentage result of 52.9%. Unsupervised and supervised classification were conducted using spectral and temporal target signatures. Temporal target signatures produced better visual classification than spectral target signature for unsupervised classification. Supervised classification yielded better results using the spectral target signatures, with a highest weighted accuracy of 99% for 7-class reference image. Four emissivity retrieval algorithms were applied on this dataset. However, the retrieved emissivities from all four methods did not represent true material emissivity and could not be used for analysis. This spectrally and temporally rich dataset enabled to conduct analysis that was not possible with other data collections. Regarding future work, applying noise-reduction techniques before applying temperature-emissivity retrieval algorithms may produce more realistic emissivity values, which could be used for target detection and material identification.

Evaluating Mixture Modeling for Clustering: Recommendations and Cautions

ERIC Educational Resources Information Center

Steinley, Douglas; Brusco, Michael J.

2011-01-01

This article provides a large-scale investigation into several of the properties of mixture-model clustering techniques (also referred to as latent class cluster analysis, latent profile analysis, model-based clustering, probabilistic clustering, Bayesian classification, unsupervised learning, and finite mixture models; see Vermunt & Magdison,…

Conduction Delay Learning Model for Unsupervised and Supervised Classification of Spatio-Temporal Spike Patterns

PubMed Central

Matsubara, Takashi

2017-01-01

Precise spike timing is considered to play a fundamental role in communications and signal processing in biological neural networks. Understanding the mechanism of spike timing adjustment would deepen our understanding of biological systems and enable advanced engineering applications such as efficient computational architectures. However, the biological mechanisms that adjust and maintain spike timing remain unclear. Existing algorithms adopt a supervised approach, which adjusts the axonal conduction delay and synaptic efficacy until the spike timings approximate the desired timings. This study proposes a spike timing-dependent learning model that adjusts the axonal conduction delay and synaptic efficacy in both unsupervised and supervised manners. The proposed learning algorithm approximates the Expectation-Maximization algorithm, and classifies the input data encoded into spatio-temporal spike patterns. Even in the supervised classification, the algorithm requires no external spikes indicating the desired spike timings unlike existing algorithms. Furthermore, because the algorithm is consistent with biological models and hypotheses found in existing biological studies, it could capture the mechanism underlying biological delay learning. PMID:29209191

Conduction Delay Learning Model for Unsupervised and Supervised Classification of Spatio-Temporal Spike Patterns.

PubMed

Matsubara, Takashi

2017-01-01

Precise spike timing is considered to play a fundamental role in communications and signal processing in biological neural networks. Understanding the mechanism of spike timing adjustment would deepen our understanding of biological systems and enable advanced engineering applications such as efficient computational architectures. However, the biological mechanisms that adjust and maintain spike timing remain unclear. Existing algorithms adopt a supervised approach, which adjusts the axonal conduction delay and synaptic efficacy until the spike timings approximate the desired timings. This study proposes a spike timing-dependent learning model that adjusts the axonal conduction delay and synaptic efficacy in both unsupervised and supervised manners. The proposed learning algorithm approximates the Expectation-Maximization algorithm, and classifies the input data encoded into spatio-temporal spike patterns. Even in the supervised classification, the algorithm requires no external spikes indicating the desired spike timings unlike existing algorithms. Furthermore, because the algorithm is consistent with biological models and hypotheses found in existing biological studies, it could capture the mechanism underlying biological delay learning.

Automatic Galaxy Classification via Machine Learning Techniques: Parallelized Rotation/Flipping INvariant Kohonen Maps (PINK)

NASA Astrophysics Data System (ADS)

Polsterer, K. L.; Gieseke, F.; Igel, C.

2015-09-01

In the last decades more and more all-sky surveys created an enormous amount of data which is publicly available on the Internet. Crowd-sourcing projects such as Galaxy-Zoo and Radio-Galaxy-Zoo used encouraged users from all over the world to manually conduct various classification tasks. The combination of the pattern-recognition capabilities of thousands of volunteers enabled scientists to finish the data analysis within acceptable time. For up-coming surveys with billions of sources, however, this approach is not feasible anymore. In this work, we present an unsupervised method that can automatically process large amounts of galaxy data and which generates a set of prototypes. This resulting model can be used to both visualize the given galaxy data as well as to classify so far unseen images.

Canonical Sectors and Evolution of Firms in the US Stock Markets

NASA Astrophysics Data System (ADS)

Hayden, Lorien; Chachra, Ricky; Alemi, Alexander; Ginsparg, Paul; Sethna, James

2015-03-01

In this work, we show how unsupervised machine learning can provide a more objective and comprehensive broad-level sector decomposition of stocks. Classification of companies into sectors of the economy is important for macroeconomic analysis, and for investments into the sector-specific financial indices and exchange traded funds (ETFs). Historically, these major industrial classification systems and financial indices have been based on expert opinion and developed manually. Our method, in contrast, produces an emergent low-dimensional structure in the space of historical stock price returns. This emergent structure automatically identifies ``canonical sectors'' in the market, and assigns every stock a participation weight into these sectors. Furthermore, by analyzing data from different periods, we show how these weights for listed firms have evolved over time. This work was partially supported by NSF Grants DMR 1312160, OCI 0926550 and DGE-1144153 (LXH).

Residential roof condition assessment system using deep learning

NASA Astrophysics Data System (ADS)

Wang, Fan; Kerekes, John P.; Xu, Zhuoyi; Wang, Yandong

2018-01-01

The emergence of high resolution (HR) and ultra high resolution (UHR) airborne remote sensing imagery is enabling humans to move beyond traditional land cover analysis applications to the detailed characterization of surface objects. A residential roof condition assessment method using techniques from deep learning is presented. The proposed method operates on individual roofs and divides the task into two stages: (1) roof segmentation, followed by (2) condition classification of the segmented roof regions. As the first step in this process, a self-tuning method is proposed to segment the images into small homogeneous areas. The segmentation is initialized with simple linear iterative clustering followed by deep learned feature extraction and region merging, with the optimal result selected by an unsupervised index, Q. After the segmentation, a pretrained residual network is fine-tuned on the augmented roof segments using a proposed k-pixel extension technique for classification. The effectiveness of the proposed algorithm was demonstrated on both HR and UHR imagery collected by EagleView over different study sites. The proposed algorithm has yielded promising results and has outperformed traditional machine learning methods using hand-crafted features.

Near ground level sensing for spatial analysis of vegetation

NASA Technical Reports Server (NTRS)

Sauer, Tom; Rasure, John; Gage, Charlie

1991-01-01

Measured changes in vegetation indicate the dynamics of ecological processes and can identify the impacts from disturbances. Traditional methods of vegetation analysis tend to be slow because they are labor intensive; as a result, these methods are often confined to small local area measurements. Scientists need new algorithms and instruments that will allow them to efficiently study environmental dynamics across a range of different spatial scales. A new methodology that addresses this problem is presented. This methodology includes the acquisition, processing, and presentation of near ground level image data and its corresponding spatial characteristics. The systematic approach taken encompasses a feature extraction process, a supervised and unsupervised classification process, and a region labeling process yielding spatial information.

Geospatial Method for Computing Supplemental Multi-Decadal U.S. Coastal Land-Use and Land-Cover Classification Products, Using Landsat Data and C-CAP Products

NASA Technical Reports Server (NTRS)

Spruce, J. P.; Smoot, James; Ellis, Jean; Hilbert, Kent; Swann, Roberta

2012-01-01

This paper discusses the development and implementation of a geospatial data processing method and multi-decadal Landsat time series for computing general coastal U.S. land-use and land-cover (LULC) classifications and change products consisting of seven classes (water, barren, upland herbaceous, non-woody wetland, woody upland, woody wetland, and urban). Use of this approach extends the observational period of the NOAA-generated Coastal Change and Analysis Program (C-CAP) products by almost two decades, assuming the availability of one cloud free Landsat scene from any season for each targeted year. The Mobile Bay region in Alabama was used as a study area to develop, demonstrate, and validate the method that was applied to derive LULC products for nine dates at approximate five year intervals across a 34-year time span, using single dates of data for each classification in which forests were either leaf-on, leaf-off, or mixed senescent conditions. Classifications were computed and refined using decision rules in conjunction with unsupervised classification of Landsat data and C-CAP value-added products. Each classification's overall accuracy was assessed by comparing stratified random locations to available reference data, including higher spatial resolution satellite and aerial imagery, field survey data, and raw Landsat RGBs. Overall classification accuracies ranged from 83 to 91% with overall Kappa statistics ranging from 0.78 to 0.89. The accuracies are comparable to those from similar, generalized LULC products derived from C-CAP data. The Landsat MSS-based LULC product accuracies are similar to those from Landsat TM or ETM+ data. Accurate classifications were computed for all nine dates, yielding effective results regardless of season. This classification method yielded products that were used to compute LULC change products via additive GIS overlay techniques.

A Comparative Evaluation of Unsupervised Anomaly Detection Algorithms for Multivariate Data.

PubMed

Goldstein, Markus; Uchida, Seiichi

2016-01-01

Anomaly detection is the process of identifying unexpected items or events in datasets, which differ from the norm. In contrast to standard classification tasks, anomaly detection is often applied on unlabeled data, taking only the internal structure of the dataset into account. This challenge is known as unsupervised anomaly detection and is addressed in many practical applications, for example in network intrusion detection, fraud detection as well as in the life science and medical domain. Dozens of algorithms have been proposed in this area, but unfortunately the research community still lacks a comparative universal evaluation as well as common publicly available datasets. These shortcomings are addressed in this study, where 19 different unsupervised anomaly detection algorithms are evaluated on 10 different datasets from multiple application domains. By publishing the source code and the datasets, this paper aims to be a new well-funded basis for unsupervised anomaly detection research. Additionally, this evaluation reveals the strengths and weaknesses of the different approaches for the first time. Besides the anomaly detection performance, computational effort, the impact of parameter settings as well as the global/local anomaly detection behavior is outlined. As a conclusion, we give an advise on algorithm selection for typical real-world tasks.

Acoustic mapping and classification of benthic habitat using unsupervised learning in artificial reef water

NASA Astrophysics Data System (ADS)

Li, Dong; Tang, Cheng; Xia, Chunlei; Zhang, Hua

2017-02-01

Artificial reefs (ARs) are effective means to maintain fishery resources and to restore ecological environment in coastal waters. ARs have been widely constructed along the Chinese coast. However, understanding of benthic habitats in the vicinity of ARs is limited, hindering effective fisheries and aquacultural management. Multibeam echosounder (MBES) is an advanced acoustic instrument capable of efficiently generating large-scale maps of benthic environments at fine resolutions. The objective of this study is to develop a technical approach to characterize, classify, and map shallow coastal areas with ARs using an MBES. An automated classification method is designed and tested to process bathymetric and backscatter data from MBES and transform the variables into simple, easily visualized maps. To reduce the redundancy in acoustic variables, a principal component analysis (PCA) is used to condense the highly collinear dataset. An acoustic benthic map of bottom sediments is classified using an iterative self-organizing data analysis technique (ISODATA). The approach is tested with MBES surveys in a 1.15 km2 fish farm with a high density of ARs off the Yantai coast in northern China. Using this method, 3 basic benthic habitats (sandy bottom, muddy sediments, and ARs) are distinguished. The results of the classification are validated using sediment samples and underwater surveys. Our study shows that the use of MBES is an effective method for acoustic mapping and classification of ARs.

A k-mer-based barcode DNA classification methodology based on spectral representation and a neural gas network.

PubMed

Fiannaca, Antonino; La Rosa, Massimo; Rizzo, Riccardo; Urso, Alfonso

2015-07-01

In this paper, an alignment-free method for DNA barcode classification that is based on both a spectral representation and a neural gas network for unsupervised clustering is proposed. In the proposed methodology, distinctive words are identified from a spectral representation of DNA sequences. A taxonomic classification of the DNA sequence is then performed using the sequence signature, i.e., the smallest set of k-mers that can assign a DNA sequence to its proper taxonomic category. Experiments were then performed to compare our method with other supervised machine learning classification algorithms, such as support vector machine, random forest, ripper, naïve Bayes, ridor, and classification tree, which also consider short DNA sequence fragments of 200 and 300 base pairs (bp). The experimental tests were conducted over 10 real barcode datasets belonging to different animal species, which were provided by the on-line resource "Barcode of Life Database". The experimental results showed that our k-mer-based approach is directly comparable, in terms of accuracy, recall and precision metrics, with the other classifiers when considering full-length sequences. In addition, we demonstrate the robustness of our method when a classification is performed task with a set of short DNA sequences that were randomly extracted from the original data. For example, the proposed method can reach the accuracy of 64.8% at the species level with 200-bp fragments. Under the same conditions, the best other classifier (random forest) reaches the accuracy of 20.9%. Our results indicate that we obtained a clear improvement over the other classifiers for the study of short DNA barcode sequence fragments. Copyright © 2015 Elsevier B.V. All rights reserved.

Development Of Polarimetric Decomposition Techniques For Indian Forest Resource Assessment Using Radar Imaging Satellite (Risat-1) Images

NASA Astrophysics Data System (ADS)

Sridhar, J.

2015-12-01

The focus of this work is to examine polarimetric decomposition techniques primarily focussed on Pauli decomposition and Sphere Di-Plane Helix (SDH) decomposition for forest resource assessment. The data processing methods adopted are Pre-processing (Geometric correction and Radiometric calibration), Speckle Reduction, Image Decomposition and Image Classification. Initially to classify forest regions, unsupervised classification was applied to determine different unknown classes. It was observed K-means clustering method gave better results in comparison with ISO Data method.Using the algorithm developed for Radar Tools, the code for decomposition and classification techniques were applied in Interactive Data Language (IDL) and was applied to RISAT-1 image of Mysore-Mandya region of Karnataka, India. This region is chosen for studying forest vegetation and consists of agricultural lands, water and hilly regions. Polarimetric SAR data possess a high potential for classification of earth surface.After applying the decomposition techniques, classification was done by selecting region of interests andpost-classification the over-all accuracy was observed to be higher in the SDH decomposed image, as it operates on individual pixels on a coherent basis and utilises the complete intrinsic coherent nature of polarimetric SAR data. Thereby, making SDH decomposition particularly suited for analysis of high-resolution SAR data. The Pauli Decomposition represents all the polarimetric information in a single SAR image however interpretation of the resulting image is difficult. The SDH decomposition technique seems to produce better results and interpretation as compared to Pauli Decomposition however more quantification and further analysis are being done in this area of research. The comparison of Polarimetric decomposition techniques and evolutionary classification techniques will be the scope of this work.

Comparing automated classification and digitization approaches to detect change in eelgrass bed extent during restoration of a large river delta

USGS Publications Warehouse

Davenport, Anna Elizabeth; Davis, Jerry D.; Woo, Isa; Grossman, Eric; Barham, Jesse B.; Ellings, Christopher S.; Takekawa, John Y.

2017-01-01

Native eelgrass (Zostera marina) is an important contributor to ecosystem services that supplies cover for juvenile fish, supports a variety of invertebrate prey resources for fish and waterbirds, provides substrate for herring roe consumed by numerous fish and birds, helps stabilize sediment, and sequesters organic carbon. Seagrasses are in decline globally, and monitoring changes in their growth and extent is increasingly valuable to determine impacts from large-scale estuarine restoration and inform blue carbon mapping initiatives. Thus, we examined the efficacy of two remote sensing mapping methods with high-resolution (0.5 m pixel size) color near infrared imagery with ground validation to assess change following major tidal marsh restoration. Automated classification of false color aerial imagery and digitized polygons documented a slight decline in eelgrass area directly after restoration followed by an increase two years later. Classification of sparse and low to medium density eelgrass was confounded in areas with algal cover, however large dense patches of eelgrass were well delineated. Automated classification of aerial imagery from unsupervised and supervised methods provided reasonable accuracies of 73% and hand-digitizing polygons from the same imagery yielded similar results. Visual clues for hand digitizing from the high-resolution imagery provided as reliable a map of dense eelgrass extent as automated image classification. We found that automated classification had no advantages over manual digitization particularly because of the limitations of detecting eelgrass with only three bands of imagery and near infrared.

Analysis of simulated advanced spaceborne thermal emission and reflection (ASTER) radiometer data of the Iron Hill, Colorado, study area for mapping lithologies

USGS Publications Warehouse

Rowan, L.C.

1998-01-01

The advanced spaceborne thermal emission and reflection (ASTER) radiometer was designed to record reflected energy in nine channels with 15 or 30 m resolution, including stereoscopic images, and emitted energy in five channels with 90 m resolution from the NASA Earth Observing System AM1 platform. A simulated ASTER data set was produced for the Iron Hill, Colorado, study area by resampling calibrated, registered airborne visible/infrared imaging spectrometer (AVIRIS) data, and thermal infrared multispectral scanner (TIMS) data to the appropriate spatial and spectral parameters. A digital elevation model was obtained to simulate ASTER-derived topographic data. The main lithologic units in the area are granitic rocks and felsite into which a carbonatite stock and associated alkalic igneous rocks were intruded; these rocks are locally covered by Jurassic sandstone, Tertiary rhyolitic tuff, and colluvial deposits. Several methods were evaluated for mapping the main lithologic units, including the unsupervised classification and spectral curve-matching techniques. In the five thermal-infrared (TIR) channels, comparison of the results of linear spectral unmixing and unsupervised classification with published geologic maps showed that the main lithologic units were mapped, but large areas with moderate to dense tree cover were not mapped in the TIR data. Compared to TIMS data, simulated ASTER data permitted slightly less discrimination in the mafic alkalic rock series, and carbonatite was not mapped in the TIMS nor in the simulated ASTER TIR data. In the nine visible and near-infrared channels, unsupervised classification did not yield useful results, but both the spectral linear unmixing and the matched filter techniques produced useful results, including mapping calcitic and dolomitic carbonatite exposures, travertine in hot spring deposits, kaolinite in argillized sandstone and tuff, and muscovite in sericitized granite and felsite, as well as commonly occurring illite/muscovite. However, the distinction made in AVIRIS data between calcite and dolomite was not consistently feasible in the simulated ASTER data. Comparison of the lithologic information produced by spectral analysis of the simulated ASTER data to a photogeologic interpretation of a simulated ASTER color image illustrates the high potential of spectral analysis of ASTER data to geologic interpretation. This paper is not subject to U.S. copyright. Published in 1998 by the American Geophysical Union.

Understanding Student Language: An Unsupervised Dialogue Act Classification Approach

ERIC Educational Resources Information Center

Ezen-Can, Aysu; Boyer, Kristy Elizabeth

2015-01-01

Within the landscape of educational data, textual natural language is an increasingly vast source of learning-centered interactions. In natural language dialogue, student contributions hold important information about knowledge and goals. Automatically modeling the dialogue act of these student utterances is crucial for scaling natural language…

Measuring Category Intuitiveness in Unconstrained Categorization Tasks

ERIC Educational Resources Information Center

Pothos, Emmanuel M.; Perlman, Amotz; Bailey, Todd M.; Kurtz, Ken; Edwards, Darren J.; Hines, Peter; McDonnell, John V.

2011-01-01

What makes a category seem natural or intuitive? In this paper, an unsupervised categorization task was employed to examine observer agreement concerning the categorization of nine different stimulus sets. The stimulus sets were designed to capture different intuitions about classification structure. The main empirical index of category…

A Pattern Recognition Approach to Acoustic Emission Data Originating from Fatigue of Wind Turbine Blades

PubMed Central

Tang, Jialin; Soua, Slim; Mares, Cristinel; Gan, Tat-Hean

2017-01-01

The identification of particular types of damage in wind turbine blades using acoustic emission (AE) techniques is a significant emerging field. In this work, a 45.7-m turbine blade was subjected to flap-wise fatigue loading for 21 days, during which AE was measured by internally mounted piezoelectric sensors. This paper focuses on using unsupervised pattern recognition methods to characterize different AE activities corresponding to different fracture mechanisms. A sequential feature selection method based on a k-means clustering algorithm is used to achieve a fine classification accuracy. The visualization of clusters in peak frequency−frequency centroid features is used to correlate the clustering results with failure modes. The positions of these clusters in time domain features, average frequency−MARSE, and average frequency−peak amplitude are also presented in this paper (where MARSE represents the Measured Area under Rectified Signal Envelope). The results show that these parameters are representative for the classification of the failure modes. PMID:29104245

A Pattern Recognition Approach to Acoustic Emission Data Originating from Fatigue of Wind Turbine Blades.

PubMed

Tang, Jialin; Soua, Slim; Mares, Cristinel; Gan, Tat-Hean

2017-11-01

The identification of particular types of damage in wind turbine blades using acoustic emission (AE) techniques is a significant emerging field. In this work, a 45.7-m turbine blade was subjected to flap-wise fatigue loading for 21 days, during which AE was measured by internally mounted piezoelectric sensors. This paper focuses on using unsupervised pattern recognition methods to characterize different AE activities corresponding to different fracture mechanisms. A sequential feature selection method based on a k-means clustering algorithm is used to achieve a fine classification accuracy. The visualization of clusters in peak frequency-frequency centroid features is used to correlate the clustering results with failure modes. The positions of these clusters in time domain features, average frequency-MARSE, and average frequency-peak amplitude are also presented in this paper (where MARSE represents the Measured Area under Rectified Signal Envelope). The results show that these parameters are representative for the classification of the failure modes.

Analysis of thematic mapper simulator data acquired during winter season over Pearl River, Mississippi, test site

NASA Technical Reports Server (NTRS)

Anderson, J. E.; Kalcic, M. T. (Principal Investigator)

1982-01-01

Digital processed aircraft-acquired thematic mapping simulator (TMS) data collected during the winter season over a forested site in southern Mississippi are presented to investigate the utility of TMS data for use in forest inventories and monitoring. Analyses indicated that TMS data are capable of delineating the mixed forest land cover type to an accuracy of 92.5 % correct. The accuracies associated with river bottom forest and pine forest were 95.5 and 91.5 % correct. The accuracies associated with river bottom forest and pine forest were 95.5 and 91.5 % correct, respectively. The figures reflect the performance for products produced using the best subset of channels for each forest cover type. It was found that the choice of channels (subsets) has a significant effect on the accuracy of classification produced, and that the same channels are not the most desirable for all three forest types studied. Both supervised and unsupervised spectral signature development techniques are evaluated; the unsupervised methods proved unacceptable for the three forest types considered.

An Event-Driven Classifier for Spiking Neural Networks Fed with Synthetic or Dynamic Vision Sensor Data.

PubMed

Stromatias, Evangelos; Soto, Miguel; Serrano-Gotarredona, Teresa; Linares-Barranco, Bernabé

2017-01-01

This paper introduces a novel methodology for training an event-driven classifier within a Spiking Neural Network (SNN) System capable of yielding good classification results when using both synthetic input data and real data captured from Dynamic Vision Sensor (DVS) chips. The proposed supervised method uses the spiking activity provided by an arbitrary topology of prior SNN layers to build histograms and train the classifier in the frame domain using the stochastic gradient descent algorithm. In addition, this approach can cope with leaky integrate-and-fire neuron models within the SNN, a desirable feature for real-world SNN applications, where neural activation must fade away after some time in the absence of inputs. Consequently, this way of building histograms captures the dynamics of spikes immediately before the classifier. We tested our method on the MNIST data set using different synthetic encodings and real DVS sensory data sets such as N-MNIST, MNIST-DVS, and Poker-DVS using the same network topology and feature maps. We demonstrate the effectiveness of our approach by achieving the highest classification accuracy reported on the N-MNIST (97.77%) and Poker-DVS (100%) real DVS data sets to date with a spiking convolutional network. Moreover, by using the proposed method we were able to retrain the output layer of a previously reported spiking neural network and increase its performance by 2%, suggesting that the proposed classifier can be used as the output layer in works where features are extracted using unsupervised spike-based learning methods. In addition, we also analyze SNN performance figures such as total event activity and network latencies, which are relevant for eventual hardware implementations. In summary, the paper aggregates unsupervised-trained SNNs with a supervised-trained SNN classifier, combining and applying them to heterogeneous sets of benchmarks, both synthetic and from real DVS chips.

Unsupervised classification of multivariate geostatistical data: Two algorithms

NASA Astrophysics Data System (ADS)

Romary, Thomas; Ors, Fabien; Rivoirard, Jacques; Deraisme, Jacques

2015-12-01

With the increasing development of remote sensing platforms and the evolution of sampling facilities in mining and oil industry, spatial datasets are becoming increasingly large, inform a growing number of variables and cover wider and wider areas. Therefore, it is often necessary to split the domain of study to account for radically different behaviors of the natural phenomenon over the domain and to simplify the subsequent modeling step. The definition of these areas can be seen as a problem of unsupervised classification, or clustering, where we try to divide the domain into homogeneous domains with respect to the values taken by the variables in hand. The application of classical clustering methods, designed for independent observations, does not ensure the spatial coherence of the resulting classes. Image segmentation methods, based on e.g. Markov random fields, are not adapted to irregularly sampled data. Other existing approaches, based on mixtures of Gaussian random functions estimated via the expectation-maximization algorithm, are limited to reasonable sample sizes and a small number of variables. In this work, we propose two algorithms based on adaptations of classical algorithms to multivariate geostatistical data. Both algorithms are model free and can handle large volumes of multivariate, irregularly spaced data. The first one proceeds by agglomerative hierarchical clustering. The spatial coherence is ensured by a proximity condition imposed for two clusters to merge. This proximity condition relies on a graph organizing the data in the coordinates space. The hierarchical algorithm can then be seen as a graph-partitioning algorithm. Following this interpretation, a spatial version of the spectral clustering algorithm is also proposed. The performances of both algorithms are assessed on toy examples and a mining dataset.

Classification and unsupervised clustering of LIGO data with Deep Transfer Learning

NASA Astrophysics Data System (ADS)

George, Daniel; Shen, Hongyu; Huerta, E. A.

2018-05-01

Gravitational wave detection requires a detailed understanding of the response of the LIGO and Virgo detectors to true signals in the presence of environmental and instrumental noise. Of particular interest is the study of anomalous non-Gaussian transients, such as glitches, since their occurrence rate in LIGO and Virgo data can obscure or even mimic true gravitational wave signals. Therefore, successfully identifying and excising these anomalies from gravitational wave data is of utmost importance for the detection and characterization of true signals and for the accurate computation of their significance. To facilitate this work, we present the first application of deep learning combined with transfer learning to show that knowledge from pretrained models for real-world object recognition can be transferred for classifying spectrograms of glitches. To showcase this new method, we use a data set of twenty-two classes of glitches, curated and labeled by the Gravity Spy project using data collected during LIGO's first discovery campaign. We demonstrate that our Deep Transfer Learning method enables an optimal use of very deep convolutional neural networks for glitch classification given small and unbalanced training data sets, significantly reduces the training time, and achieves state-of-the-art accuracy above 98.8%, lowering the previous error rate by over 60%. More importantly, once trained via transfer learning on the known classes, we show that our neural networks can be truncated and used as feature extractors for unsupervised clustering to automatically group together new unknown classes of glitches and anomalous signals. This novel capability is of paramount importance to identify and remove new types of glitches which will occur as the LIGO/Virgo detectors gradually attain design sensitivity.

Application of LANDSAT data to monitor land reclamation progress in Belmont County, Ohio

NASA Technical Reports Server (NTRS)

Bloemer, H. H. L.; Brumfield, J. O.; Campbell, W. J.; Witt, R. G.; Bly, B. G.

1981-01-01

Strip and contour mining techniques are reviewed as well as some studies conducted to determine the applicability of LANDSAT and associated digital image processing techniques to the surficial problems associated with mining operations. A nontraditional unsupervised classification approach to multispectral data is considered which renders increased classification separability in land cover analysis of surface mined areas. The approach also reduces the dimensionality of the data and requires only minimal analytical skills in digital data processing.

MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering

PubMed Central

Kim, Eun-Youn; Kim, Seon-Young; Ashlock, Daniel; Nam, Dougu

2009-01-01

Background Uncovering subtypes of disease from microarray samples has important clinical implications such as survival time and sensitivity of individual patients to specific therapies. Unsupervised clustering methods have been used to classify this type of data. However, most existing methods focus on clusters with compact shapes and do not reflect the geometric complexity of the high dimensional microarray clusters, which limits their performance. Results We present a cluster-number-based ensemble clustering algorithm, called MULTI-K, for microarray sample classification, which demonstrates remarkable accuracy. The method amalgamates multiple k-means runs by varying the number of clusters and identifies clusters that manifest the most robust co-memberships of elements. In addition to the original algorithm, we newly devised the entropy-plot to control the separation of singletons or small clusters. MULTI-K, unlike the simple k-means or other widely used methods, was able to capture clusters with complex and high-dimensional structures accurately. MULTI-K outperformed other methods including a recently developed ensemble clustering algorithm in tests with five simulated and eight real gene-expression data sets. Conclusion The geometric complexity of clusters should be taken into account for accurate classification of microarray data, and ensemble clustering applied to the number of clusters tackles the problem very well. The C++ code and the data sets tested are available from the authors. PMID:19698124

Combining fuzzy set theory and nonlinear stretching enhancement for unsupervised classification of cotton root rot

USDA-ARS?s Scientific Manuscript database

Cotton root rot is a destructive disease affecting cotton production. Accurate identification of infected areas within fields is useful for cost-effective control of the disease. The uncertainties caused by various infection stages and newly infected plants make it difficult to achieve accurate clas...

Collected Notes on the Workshop for Pattern Discovery in Large Databases

NASA Technical Reports Server (NTRS)

Buntine, Wray (Editor); Delalto, Martha (Editor)

1991-01-01

These collected notes are a record of material presented at the Workshop. The core data analysis is addressed that have traditionally required statistical or pattern recognition techniques. Some of the core tasks include classification, discrimination, clustering, supervised and unsupervised learning, discovery and diagnosis, i.e., general pattern discovery.

High Throughput Ambient Mass Spectrometric Approach to Species Identification and Classification from Chemical Fingerprint Signatures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Musah, Rabi A.; Espinoza, Edgard O.; Cody, Robert B.

A high throughput method for species identification and classification through chemometric processing of direct analysis in real time (DART) mass spectrometry-derived fingerprint signatures has been developed. The method entails introduction of samples to the open air space between the DART ion source and the mass spectrometer inlet, with the entire observed mass spectral fingerprint subjected to unsupervised hierarchical clustering processing. Moreover, a range of both polar and non-polar chemotypes are instantaneously detected. The result is identification and species level classification based on the entire DART-MS spectrum. In this paper, we illustrate how the method can be used to: (1) distinguishmore » between endangered woods regulated by the Convention for the International Trade of Endangered Flora and Fauna (CITES) treaty; (2) assess the origin and by extension the properties of biodiesel feedstocks; (3) determine insect species from analysis of puparial casings; (4) distinguish between psychoactive plants products; and (5) differentiate between Eucalyptus species. An advantage of the hierarchical clustering approach to processing of the DART-MS derived fingerprint is that it shows both similarities and differences between species based on their chemotypes. Furthermore, full knowledge of the identities of the constituents contained within the small molecule profile of analyzed samples is not required.« less

High Throughput Ambient Mass Spectrometric Approach to Species Identification and Classification from Chemical Fingerprint Signatures

DOE PAGES

Musah, Rabi A.; Espinoza, Edgard O.; Cody, Robert B.; ...

2015-07-09

A high throughput method for species identification and classification through chemometric processing of direct analysis in real time (DART) mass spectrometry-derived fingerprint signatures has been developed. The method entails introduction of samples to the open air space between the DART ion source and the mass spectrometer inlet, with the entire observed mass spectral fingerprint subjected to unsupervised hierarchical clustering processing. Moreover, a range of both polar and non-polar chemotypes are instantaneously detected. The result is identification and species level classification based on the entire DART-MS spectrum. In this paper, we illustrate how the method can be used to: (1) distinguishmore » between endangered woods regulated by the Convention for the International Trade of Endangered Flora and Fauna (CITES) treaty; (2) assess the origin and by extension the properties of biodiesel feedstocks; (3) determine insect species from analysis of puparial casings; (4) distinguish between psychoactive plants products; and (5) differentiate between Eucalyptus species. An advantage of the hierarchical clustering approach to processing of the DART-MS derived fingerprint is that it shows both similarities and differences between species based on their chemotypes. Furthermore, full knowledge of the identities of the constituents contained within the small molecule profile of analyzed samples is not required.« less

A High Throughput Ambient Mass Spectrometric Approach to Species Identification and Classification from Chemical Fingerprint Signatures

PubMed Central

Musah, Rabi A.; Espinoza, Edgard O.; Cody, Robert B.; Lesiak, Ashton D.; Christensen, Earl D.; Moore, Hannah E.; Maleknia, Simin; Drijfhout, Falko P.

2015-01-01

A high throughput method for species identification and classification through chemometric processing of direct analysis in real time (DART) mass spectrometry-derived fingerprint signatures has been developed. The method entails introduction of samples to the open air space between the DART ion source and the mass spectrometer inlet, with the entire observed mass spectral fingerprint subjected to unsupervised hierarchical clustering processing. A range of both polar and non-polar chemotypes are instantaneously detected. The result is identification and species level classification based on the entire DART-MS spectrum. Here, we illustrate how the method can be used to: (1) distinguish between endangered woods regulated by the Convention for the International Trade of Endangered Flora and Fauna (CITES) treaty; (2) assess the origin and by extension the properties of biodiesel feedstocks; (3) determine insect species from analysis of puparial casings; (4) distinguish between psychoactive plants products; and (5) differentiate between Eucalyptus species. An advantage of the hierarchical clustering approach to processing of the DART-MS derived fingerprint is that it shows both similarities and differences between species based on their chemotypes. Furthermore, full knowledge of the identities of the constituents contained within the small molecule profile of analyzed samples is not required. PMID:26156000

Centered Kernel Alignment Enhancing Neural Network Pretraining for MRI-Based Dementia Diagnosis

PubMed Central

Cárdenas-Peña, David; Collazos-Huertas, Diego; Castellanos-Dominguez, German

2016-01-01

Dementia is a growing problem that affects elderly people worldwide. More accurate evaluation of dementia diagnosis can help during the medical examination. Several methods for computer-aided dementia diagnosis have been proposed using resonance imaging scans to discriminate between patients with Alzheimer's disease (AD) or mild cognitive impairment (MCI) and healthy controls (NC). Nonetheless, the computer-aided diagnosis is especially challenging because of the heterogeneous and intermediate nature of MCI. We address the automated dementia diagnosis by introducing a novel supervised pretraining approach that takes advantage of the artificial neural network (ANN) for complex classification tasks. The proposal initializes an ANN based on linear projections to achieve more discriminating spaces. Such projections are estimated by maximizing the centered kernel alignment criterion that assesses the affinity between the resonance imaging data kernel matrix and the label target matrix. As a result, the performed linear embedding allows accounting for features that contribute the most to the MCI class discrimination. We compare the supervised pretraining approach to two unsupervised initialization methods (autoencoders and Principal Component Analysis) and against the best four performing classification methods of the 2014 CADDementia challenge. As a result, our proposal outperforms all the baselines (7% of classification accuracy and area under the receiver-operating-characteristic curve) at the time it reduces the class biasing. PMID:27148392

A High Throughput Ambient Mass Spectrometric Approach to Species Identification and Classification from Chemical Fingerprint Signatures

NASA Astrophysics Data System (ADS)

Musah, Rabi A.; Espinoza, Edgard O.; Cody, Robert B.; Lesiak, Ashton D.; Christensen, Earl D.; Moore, Hannah E.; Maleknia, Simin; Drijfhout, Falko P.

2015-07-01

A high throughput method for species identification and classification through chemometric processing of direct analysis in real time (DART) mass spectrometry-derived fingerprint signatures has been developed. The method entails introduction of samples to the open air space between the DART ion source and the mass spectrometer inlet, with the entire observed mass spectral fingerprint subjected to unsupervised hierarchical clustering processing. A range of both polar and non-polar chemotypes are instantaneously detected. The result is identification and species level classification based on the entire DART-MS spectrum. Here, we illustrate how the method can be used to: (1) distinguish between endangered woods regulated by the Convention for the International Trade of Endangered Flora and Fauna (CITES) treaty; (2) assess the origin and by extension the properties of biodiesel feedstocks; (3) determine insect species from analysis of puparial casings; (4) distinguish between psychoactive plants products; and (5) differentiate between Eucalyptus species. An advantage of the hierarchical clustering approach to processing of the DART-MS derived fingerprint is that it shows both similarities and differences between species based on their chemotypes. Furthermore, full knowledge of the identities of the constituents contained within the small molecule profile of analyzed samples is not required.

Waveform classification and statistical analysis of seismic precursors to the July 2008 Vulcanian Eruption of Soufrière Hills Volcano, Montserrat

NASA Astrophysics Data System (ADS)

Rodgers, Mel; Smith, Patrick; Pyle, David; Mather, Tamsin

2016-04-01

Understanding the transition between quiescence and eruption at dome-forming volcanoes, such as Soufrière Hills Volcano (SHV), Montserrat, is important for monitoring volcanic activity during long-lived eruptions. Statistical analysis of seismic events (e.g. spectral analysis and identification of multiplets via cross-correlation) can be useful for characterising seismicity patterns and can be a powerful tool for analysing temporal changes in behaviour. Waveform classification is crucial for volcano monitoring, but consistent classification, both during real-time analysis and for retrospective analysis of previous volcanic activity, remains a challenge. Automated classification allows consistent re-classification of events. We present a machine learning (random forest) approach to rapidly classify waveforms that requires minimal training data. We analyse the seismic precursors to the July 2008 Vulcanian explosion at SHV and show systematic changes in frequency content and multiplet behaviour that had not previously been recognised. These precursory patterns of seismicity may be interpreted as changes in pressure conditions within the conduit during magma ascent and could be linked to magma flow rates. Frequency analysis of the different waveform classes supports the growing consensus that LP and Hybrid events should be considered end members of a continuum of low-frequency source processes. By using both supervised and unsupervised machine-learning methods we investigate the nature of waveform classification and assess current classification schemes.

Automatic Cell Segmentation Using a Shape-Classification Model in Immunohistochemically Stained Cytological Images

NASA Astrophysics Data System (ADS)

Shah, Shishir

This paper presents a segmentation method for detecting cells in immunohistochemically stained cytological images. A two-phase approach to segmentation is used where an unsupervised clustering approach coupled with cluster merging based on a fitness function is used as the first phase to obtain a first approximation of the cell locations. A joint segmentation-classification approach incorporating ellipse as a shape model is used as the second phase to detect the final cell contour. The segmentation model estimates a multivariate density function of low-level image features from training samples and uses it as a measure of how likely each image pixel is to be a cell. This estimate is constrained by the zero level set, which is obtained as a solution to an implicit representation of an ellipse. Results of segmentation are presented and compared to ground truth measurements.

Comprehensive Chemical Fingerprinting of High-Quality Cocoa at Early Stages of Processing: Effectiveness of Combined Untargeted and Targeted Approaches for Classification and Discrimination.

PubMed

Magagna, Federico; Guglielmetti, Alessandro; Liberto, Erica; Reichenbach, Stephen E; Allegrucci, Elena; Gobino, Guido; Bicchi, Carlo; Cordero, Chiara

2017-08-02

This study investigates chemical information of volatile fractions of high-quality cocoa (Theobroma cacao L. Malvaceae) from different origins (Mexico, Ecuador, Venezuela, Columbia, Java, Trinidad, and Sao Tomè) produced for fine chocolate. This study explores the evolution of the entire pattern of volatiles in relation to cocoa processing (raw, roasted, steamed, and ground beans). Advanced chemical fingerprinting (e.g., combined untargeted and targeted fingerprinting) with comprehensive two-dimensional gas chromatography coupled with mass spectrometry allows advanced pattern recognition for classification, discrimination, and sensory-quality characterization. The entire data set is analyzed for 595 reliable two-dimensional peak regions, including 130 known analytes and 13 potent odorants. Multivariate analysis with unsupervised exploration (principal component analysis) and simple supervised discrimination methods (Fisher ratios and linear regression trees) reveal informative patterns of similarities and differences and identify characteristic compounds related to sample origin and manufacturing step.

Face recognition using an enhanced independent component analysis approach.

PubMed

Kwak, Keun-Chang; Pedrycz, Witold

2007-03-01

This paper is concerned with an enhanced independent component analysis (ICA) and its application to face recognition. Typically, face representations obtained by ICA involve unsupervised learning and high-order statistics. In this paper, we develop an enhancement of the generic ICA by augmenting this method by the Fisher linear discriminant analysis (LDA); hence, its abbreviation, FICA. The FICA is systematically developed and presented along with its underlying architecture. A comparative analysis explores four distance metrics, as well as classification with support vector machines (SVMs). We demonstrate that the FICA approach leads to the formation of well-separated classes in low-dimension subspace and is endowed with a great deal of insensitivity to large variation in illumination and facial expression. The comprehensive experiments are completed for the facial-recognition technology (FERET) face database; a comparative analysis demonstrates that FICA comes with improved classification rates when compared with some other conventional approaches such as eigenface, fisherface, and the ICA itself.

A Deep Machine Learning Method for Classifying Cyclic Time Series of Biological Signals Using Time-Growing Neural Network.

PubMed

Gharehbaghi, Arash; Linden, Maria

2017-10-12

This paper presents a novel method for learning the cyclic contents of stochastic time series: the deep time-growing neural network (DTGNN). The DTGNN combines supervised and unsupervised methods in different levels of learning for an enhanced performance. It is employed by a multiscale learning structure to classify cyclic time series (CTS), in which the dynamic contents of the time series are preserved in an efficient manner. This paper suggests a systematic procedure for finding the design parameter of the classification method for a one-versus-multiple class application. A novel validation method is also suggested for evaluating the structural risk, both in a quantitative and a qualitative manner. The effect of the DTGNN on the performance of the classifier is statistically validated through the repeated random subsampling using different sets of CTS, from different medical applications. The validation involves four medical databases, comprised of 108 recordings of the electroencephalogram signal, 90 recordings of the electromyogram signal, 130 recordings of the heart sound signal, and 50 recordings of the respiratory sound signal. Results of the statistical validations show that the DTGNN significantly improves the performance of the classification and also exhibits an optimal structural risk.

Ensemble Semi-supervised Frame-work for Brain Magnetic Resonance Imaging Tissue Segmentation

PubMed Central

Azmi, Reza; Pishgoo, Boshra; Norozi, Narges; Yeganeh, Samira

2013-01-01

Brain magnetic resonance images (MRIs) tissue segmentation is one of the most important parts of the clinical diagnostic tools. Pixel classification methods have been frequently used in the image segmentation with two supervised and unsupervised approaches up to now. Supervised segmentation methods lead to high accuracy, but they need a large amount of labeled data, which is hard, expensive, and slow to obtain. Moreover, they cannot use unlabeled data to train classifiers. On the other hand, unsupervised segmentation methods have no prior knowledge and lead to low level of performance. However, semi-supervised learning which uses a few labeled data together with a large amount of unlabeled data causes higher accuracy with less trouble. In this paper, we propose an ensemble semi-supervised frame-work for segmenting of brain magnetic resonance imaging (MRI) tissues that it has been used results of several semi-supervised classifiers simultaneously. Selecting appropriate classifiers has a significant role in the performance of this frame-work. Hence, in this paper, we present two semi-supervised algorithms expectation filtering maximization and MCo_Training that are improved versions of semi-supervised methods expectation maximization and Co_Training and increase segmentation accuracy. Afterward, we use these improved classifiers together with graph-based semi-supervised classifier as components of the ensemble frame-work. Experimental results show that performance of segmentation in this approach is higher than both supervised methods and the individual semi-supervised classifiers. PMID:24098863

A Comparative Evaluation of Unsupervised Anomaly Detection Algorithms for Multivariate Data

PubMed Central

Goldstein, Markus; Uchida, Seiichi

2016-01-01

Anomaly detection is the process of identifying unexpected items or events in datasets, which differ from the norm. In contrast to standard classification tasks, anomaly detection is often applied on unlabeled data, taking only the internal structure of the dataset into account. This challenge is known as unsupervised anomaly detection and is addressed in many practical applications, for example in network intrusion detection, fraud detection as well as in the life science and medical domain. Dozens of algorithms have been proposed in this area, but unfortunately the research community still lacks a comparative universal evaluation as well as common publicly available datasets. These shortcomings are addressed in this study, where 19 different unsupervised anomaly detection algorithms are evaluated on 10 different datasets from multiple application domains. By publishing the source code and the datasets, this paper aims to be a new well-funded basis for unsupervised anomaly detection research. Additionally, this evaluation reveals the strengths and weaknesses of the different approaches for the first time. Besides the anomaly detection performance, computational effort, the impact of parameter settings as well as the global/local anomaly detection behavior is outlined. As a conclusion, we give an advise on algorithm selection for typical real-world tasks. PMID:27093601

Latent feature representation with stacked auto-encoder for AD/MCI diagnosis

PubMed Central

Lee, Seong-Whan

2014-01-01

Recently, there have been great interests for computer-aided diagnosis of Alzheimer’s disease (AD) and its prodromal stage, mild cognitive impairment (MCI). Unlike the previous methods that considered simple low-level features such as gray matter tissue volumes from MRI, and mean signal intensities from PET, in this paper, we propose a deep learning-based latent feature representation with a stacked auto-encoder (SAE). We believe that there exist latent non-linear complicated patterns inherent in the low-level features such as relations among features. Combining the latent information with the original features helps build a robust model in AD/MCI classification, with high diagnostic accuracy. Furthermore, thanks to the unsupervised characteristic of the pre-training in deep learning, we can benefit from the target-unrelated samples to initialize parameters of SAE, thus finding optimal parameters in fine-tuning with the target-related samples, and further enhancing the classification performances across four binary classification problems: AD vs. healthy normal control (HC), MCI vs. HC, AD vs. MCI, and MCI converter (MCI-C) vs. MCI non-converter (MCI-NC). In our experiments on ADNI dataset, we validated the effectiveness of the proposed method, showing the accuracies of 98.8, 90.7, 83.7, and 83.3 % for AD/HC, MCI/HC, AD/MCI, and MCI-C/MCI-NC classification, respectively. We believe that deep learning can shed new light on the neuroimaging data analysis, and our work presented the applicability of this method to brain disease diagnosis. PMID:24363140

Polarimetry-Based Land Cover Classification with Sentinel-1 Data

NASA Astrophysics Data System (ADS)

Banque, Xavier; Lopez-Sanchez, Juan M.; Monells, Daniel; Ballester, David; Duro, Javier; Koudogbo, Fifame

2015-04-01

The presented research focuses on the assessment of the exploitation of the Sentinel-1 dual polarization data for land cover classification. In order to take advantage of massive data availability produced by Sentinel-1, data used in this research work is Interferometric Wide Swath mode, acquired over the Altmühlsee, Weißenburg-Gunzenhausen, Germany during November 2014. The developed preliminary classifier is based on the interpretation of several polarimetric figures as well as the Dual Polarization Entropy/Alpha Decomposition. Specifically, the following polarimetric indicators will be assessed: the channels cross- correlation, the cross and co-polar channels ratio and both cross and co-polar backscattering coefficients. The work carried out concentrates on the joint interpretation of the backscattering response of the co-pol and cross- pol channels for four or five different distributed targets that set the basis for an unsupervised simple land cover classifier. The developed research targets a preliminary unsupervised classifier able to differentiate between four or five terrain classes, including water, urban, forest and bare soil. Obtained results pave the way for the development of a Sentinel-1 based land classifier.

Land use and land cover classification for rural residential areas in China using soft-probability cascading of multifeatures

NASA Astrophysics Data System (ADS)

Zhang, Bin; Liu, Yueyan; Zhang, Zuyu; Shen, Yonglin

2017-10-01

A multifeature soft-probability cascading scheme to solve the problem of land use and land cover (LULC) classification using high-spatial-resolution images to map rural residential areas in China is proposed. The proposed method is used to build midlevel LULC features. Local features are frequently considered as low-level feature descriptors in a midlevel feature learning method. However, spectral and textural features, which are very effective low-level features, are neglected. The acquisition of the dictionary of sparse coding is unsupervised, and this phenomenon reduces the discriminative power of the midlevel feature. Thus, we propose to learn supervised features based on sparse coding, a support vector machine (SVM) classifier, and a conditional random field (CRF) model to utilize the different effective low-level features and improve the discriminability of midlevel feature descriptors. First, three kinds of typical low-level features, namely, dense scale-invariant feature transform, gray-level co-occurrence matrix, and spectral features, are extracted separately. Second, combined with sparse coding and the SVM classifier, the probabilities of the different LULC classes are inferred to build supervised feature descriptors. Finally, the CRF model, which consists of two parts: unary potential and pairwise potential, is employed to construct an LULC classification map. Experimental results show that the proposed classification scheme can achieve impressive performance when the total accuracy reached about 87%.

Comparison of remote sensing image processing techniques to identify tornado damage areas from Landsat TM data

USGS Publications Warehouse

Myint, S.W.; Yuan, M.; Cerveny, R.S.; Giri, C.P.

2008-01-01

Remote sensing techniques have been shown effective for large-scale damage surveys after a hazardous event in both near real-time or post-event analyses. The paper aims to compare accuracy of common imaging processing techniques to detect tornado damage tracks from Landsat TM data. We employed the direct change detection approach using two sets of images acquired before and after the tornado event to produce a principal component composite images and a set of image difference bands. Techniques in the comparison include supervised classification, unsupervised classification, and objectoriented classification approach with a nearest neighbor classifier. Accuracy assessment is based on Kappa coefficient calculated from error matrices which cross tabulate correctly identified cells on the TM image and commission and omission errors in the result. Overall, the Object-oriented Approach exhibits the highest degree of accuracy in tornado damage detection. PCA and Image Differencing methods show comparable outcomes. While selected PCs can improve detection accuracy 5 to 10%, the Object-oriented Approach performs significantly better with 15-20% higher accuracy than the other two techniques. ?? 2008 by MDPI.

Comparison of Remote Sensing Image Processing Techniques to Identify Tornado Damage Areas from Landsat TM Data

PubMed Central

Myint, Soe W.; Yuan, May; Cerveny, Randall S.; Giri, Chandra P.

2008-01-01

Remote sensing techniques have been shown effective for large-scale damage surveys after a hazardous event in both near real-time or post-event analyses. The paper aims to compare accuracy of common imaging processing techniques to detect tornado damage tracks from Landsat TM data. We employed the direct change detection approach using two sets of images acquired before and after the tornado event to produce a principal component composite images and a set of image difference bands. Techniques in the comparison include supervised classification, unsupervised classification, and object-oriented classification approach with a nearest neighbor classifier. Accuracy assessment is based on Kappa coefficient calculated from error matrices which cross tabulate correctly identified cells on the TM image and commission and omission errors in the result. Overall, the Object-oriented Approach exhibits the highest degree of accuracy in tornado damage detection. PCA and Image Differencing methods show comparable outcomes. While selected PCs can improve detection accuracy 5 to 10%, the Object-oriented Approach performs significantly better with 15-20% higher accuracy than the other two techniques. PMID:27879757

A review of classification algorithms for EEG-based brain–computer interfaces: a 10 year update

NASA Astrophysics Data System (ADS)

Lotte, F.; Bougrain, L.; Cichocki, A.; Clerc, M.; Congedo, M.; Rakotomamonjy, A.; Yger, F.

2018-06-01

Objective. Most current electroencephalography (EEG)-based brain–computer interfaces (BCIs) are based on machine learning algorithms. There is a large diversity of classifier types that are used in this field, as described in our 2007 review paper. Now, approximately ten years after this review publication, many new algorithms have been developed and tested to classify EEG signals in BCIs. The time is therefore ripe for an updated review of EEG classification algorithms for BCIs. Approach. We surveyed the BCI and machine learning literature from 2007 to 2017 to identify the new classification approaches that have been investigated to design BCIs. We synthesize these studies in order to present such algorithms, to report how they were used for BCIs, what were the outcomes, and to identify their pros and cons. Main results. We found that the recently designed classification algorithms for EEG-based BCIs can be divided into four main categories: adaptive classifiers, matrix and tensor classifiers, transfer learning and deep learning, plus a few other miscellaneous classifiers. Among these, adaptive classifiers were demonstrated to be generally superior to static ones, even with unsupervised adaptation. Transfer learning can also prove useful although the benefits of transfer learning remain unpredictable. Riemannian geometry-based methods have reached state-of-the-art performances on multiple BCI problems and deserve to be explored more thoroughly, along with tensor-based methods. Shrinkage linear discriminant analysis and random forests also appear particularly useful for small training samples settings. On the other hand, deep learning methods have not yet shown convincing improvement over state-of-the-art BCI methods. Significance. This paper provides a comprehensive overview of the modern classification algorithms used in EEG-based BCIs, presents the principles of these methods and guidelines on when and how to use them. It also identifies a number of challenges to further advance EEG classification in BCI.

Alzheimer disease detection from structural MR images using FCM based weighted probabilistic neural network.

PubMed

Duraisamy, Baskar; Shanmugam, Jayanthi Venkatraman; Annamalai, Jayanthi

2018-02-19

An early intervention of Alzheimer's disease (AD) is highly essential due to the fact that this neuro degenerative disease generates major life-threatening issues, especially memory loss among patients in society. Moreover, categorizing NC (Normal Control), MCI (Mild Cognitive Impairment) and AD early in course allows the patients to experience benefits from new treatments. Therefore, it is important to construct a reliable classification technique to discriminate the patients with or without AD from the bio medical imaging modality. Hence, we developed a novel FCM based Weighted Probabilistic Neural Network (FWPNN) classification algorithm and analyzed the brain images related to structural MRI modality for better discrimination of class labels. Initially our proposed framework begins with brain image normalization stage. In this stage, ROI regions related to Hippo-Campus (HC) and Posterior Cingulate Cortex (PCC) from the brain images are extracted using Automated Anatomical Labeling (AAL) method. Subsequently, nineteen highly relevant AD related features are selected through Multiple-criterion feature selection method. At last, our novel FWPNN classification algorithm is imposed to remove suspicious samples from the training data with an end goal to enhance the classification performance. This newly developed classification algorithm combines both the goodness of supervised and unsupervised learning techniques. The experimental validation is carried out with the ADNI subset and then to the Bordex-3 city dataset. Our proposed classification approach achieves an accuracy of about 98.63%, 95.4%, 96.4% in terms of classification with AD vs NC, MCI vs NC and AD vs MCI. The experimental results suggest that the removal of noisy samples from the training data can enhance the decision generation process of the expert systems.

The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments

PubMed Central

2009-01-01

Background The characterisation, or binning, of metagenome fragments is an important first step to further downstream analysis of microbial consortia. Here, we propose a one-dimensional signature, OFDEG, derived from the oligonucleotide frequency profile of a DNA sequence, and show that it is possible to obtain a meaningful phylogenetic signal for relatively short DNA sequences. The one-dimensional signal is essentially a compact representation of higher dimensional feature spaces of greater complexity and is intended to improve on the tetranucleotide frequency feature space preferred by current compositional binning methods. Results We compare the fidelity of OFDEG against tetranucleotide frequency in both an unsupervised and semi-supervised setting on simulated metagenome benchmark data. Four tests were conducted using assembler output of Arachne and phrap, and for each, performance was evaluated on contigs which are greater than or equal to 8 kbp in length and contigs which are composed of at least 10 reads. Using both G-C content in conjunction with OFDEG gave an average accuracy of 96.75% (semi-supervised) and 95.19% (unsupervised), versus 94.25% (semi-supervised) and 82.35% (unsupervised) for tetranucleotide frequency. Conclusion We have presented an observation of an alternative characteristic of DNA sequences. The proposed feature representation has proven to be more beneficial than the existing tetranucleotide frequency space to the metagenome binning problem. We do note, however, that our observation of OFDEG deserves further anlaysis and investigation. Unsupervised clustering revealed OFDEG related features performed better than standard tetranucleotide frequency in representing a relevant organism specific signal. Further improvement in binning accuracy is given by semi-supervised classification using OFDEG. The emphasis on a feature-driven, bottom-up approach to the problem of binning reveals promising avenues for future development of techniques to characterise short environmental sequences without bias toward cultivable organisms. PMID:19958473

Unsupervised classification of cirrhotic livers using MRI data

NASA Astrophysics Data System (ADS)

Lee, Gobert; Kanematsu, Masayuki; Kato, Hiroki; Kondo, Hiroshi; Zhou, Xiangrong; Hara, Takeshi; Fujita, Hiroshi; Hoshi, Hiroaki

2008-03-01

Cirrhosis of the liver is a chronic disease. It is characterized by the presence of widespread nodules and fibrosis in the liver which results in characteristic texture patterns. Computerized analysis of hepatic texture patterns is usually based on regions-of-interest (ROIs). However, not all ROIs are typical representatives of the disease stage of the liver from which the ROIs originated. This leads to uncertainties in the ROI labels (diseased or non-diseased). On the other hand, supervised classifiers are commonly used in determining the assignment rule. This presents a problem as the training of a supervised classifier requires the correct labels of the ROIs. The main purpose of this paper is to investigate the use of an unsupervised classifier, the k-means clustering, in classifying ROI based data. In addition, a procedure for generating a receiver operating characteristic (ROC) curve depicting the classification performance of k-means clustering is also reported. Hepatic MRI images of 44 patients (16 cirrhotic; 28 non-cirrhotic) are used in this study. The MRI data are derived from gadolinium-enhanced equilibrium phase images. For each patient, 10 ROIs selected by an experienced radiologist and 7 texture features measured on each ROI are included in the MRI data. Results of the k-means classifier are depicted using an ROC curve. The area under the curve (AUC) has a value of 0.704. This is slightly lower than but comparable to that of LDA and ANN classifiers which have values 0.781 and 0.801, respectively. Methods in constructing ROC curve in relation to k-means clustering have not been previously reported in the literature.

Learning Microbial Community Structures with Supervised and Unsupervised Non-negative Matrix Factorization.

PubMed

Cai, Yun; Gu, Hong; Kenney, Toby

2017-08-31

Learning the structure of microbial communities is critical in understanding the different community structures and functions of microbes in distinct individuals. We view microbial communities as consisting of many subcommunities which are formed by certain groups of microbes functionally dependent on each other. The focus of this paper is on methods for extracting the subcommunities from the data, in particular Non-Negative Matrix Factorization (NMF). Our methods can be applied to both OTU data and functional metagenomic data. We apply the existing unsupervised NMF method and also develop a new supervised NMF method for extracting interpretable information from classification problems. The relevance of the subcommunities identified by NMF is demonstrated by their excellent performance for classification. Through three data examples, we demonstrate how to interpret the features identified by NMF to draw meaningful biological conclusions and discover hitherto unidentified patterns in the data. Comparing whole metagenomes of various mammals, (Muegge et al., Science 332:970-974, 2011), the biosynthesis of macrolides pathway is found in hindgut-fermenting herbivores, but not carnivores. This is consistent with results in veterinary science that macrolides should not be given to non-ruminant herbivores. For time series microbiome data from various body sites (Caporaso et al., Genome Biol 12:50, 2011), a shift in the microbial communities is identified for one individual. The shift occurs at around the same time in the tongue and gut microbiomes, indicating that the shift is a genuine biological trait, rather than an artefact of the method. For whole metagenome data from IBD patients and healthy controls (Qin et al., Nature 464:59-65, 2010), we identify differences in a number of pathways (some known, others new). NMF is a powerful tool for identifying the key features of microbial communities. These identified features can not only be used to perform difficult classification problems with a high degree of accuracy, they are also very interpretable and can lead to important biological insights into the structure of the communities. In addition, NMF is a dimension-reduction method (similar to PCA) in that it reduces the extremely complex microbial data into a low-dimensional representation, allowing a number of analyses to be performed more easily-for example, searching for temporal patterns in the microbiome. When we are interested in the differences between the structures of two groups of communities, supervised NMF provides a better way to do this, while retaining all the advantages of NMF-e.g. interpretability and a simple biological intuition.

A Novel Unsupervised Segmentation Quality Evaluation Method for Remote Sensing Images

PubMed Central

Tang, Yunwei; Jing, Linhai; Ding, Haifeng

2017-01-01

The segmentation of a high spatial resolution remote sensing image is a critical step in geographic object-based image analysis (GEOBIA). Evaluating the performance of segmentation without ground truth data, i.e., unsupervised evaluation, is important for the comparison of segmentation algorithms and the automatic selection of optimal parameters. This unsupervised strategy currently faces several challenges in practice, such as difficulties in designing effective indicators and limitations of the spectral values in the feature representation. This study proposes a novel unsupervised evaluation method to quantitatively measure the quality of segmentation results to overcome these problems. In this method, multiple spectral and spatial features of images are first extracted simultaneously and then integrated into a feature set to improve the quality of the feature representation of ground objects. The indicators designed for spatial stratified heterogeneity and spatial autocorrelation are included to estimate the properties of the segments in this integrated feature set. These two indicators are then combined into a global assessment metric as the final quality score. The trade-offs of the combined indicators are accounted for using a strategy based on the Mahalanobis distance, which can be exhibited geometrically. The method is tested on two segmentation algorithms and three testing images. The proposed method is compared with two existing unsupervised methods and a supervised method to confirm its capabilities. Through comparison and visual analysis, the results verified the effectiveness of the proposed method and demonstrated the reliability and improvements of this method with respect to other methods. PMID:29064416

High and low density development in Puerto Rico

Treesearch

William A. Gould; Sebastian Martinuzzi; Olga M. Ramos Gonzalez

2008-01-01

This map shows the distribution of high and low density developed lands in Puerto Rico (Martinuzzi et al. 2007). The map was created using a mosaic of Landsat ETM+ images that range from the years 2000 to 2003. The developed land cover was classified using the Iterative Self-Organizing Data Analysis Technique (ISODATA) unsupervised classification (ERDAS 2003)....

Digital Image Sensor-Based Assessment of the Status of Oat (Avena sativa L.) Crops after Frost Damage

PubMed Central

Macedo-Cruz, Antonia; Pajares, Gonzalo; Santos, Matilde; Villegas-Romero, Isidro

2011-01-01

The aim of this paper is to classify the land covered with oat crops, and the quantification of frost damage on oats, while plants are still in the flowering stage. The images are taken by a digital colour camera CCD-based sensor. Unsupervised classification methods are applied because the plants present different spectral signatures, depending on two main factors: illumination and the affected state. The colour space used in this application is CIELab, based on the decomposition of the colour in three channels, because it is the closest to human colour perception. The histogram of each channel is successively split into regions by thresholding. The best threshold to be applied is automatically obtained as a combination of three thresholding strategies: (a) Otsu’s method, (b) Isodata algorithm, and (c) Fuzzy thresholding. The fusion of these automatic thresholding techniques and the design of the classification strategy are some of the main findings of the paper, which allows an estimation of the damages and a prediction of the oat production. PMID:22163940

Using Support Vector Machine Ensembles for Target Audience Classification on Twitter

PubMed Central

Lo, Siaw Ling; Chiong, Raymond; Cornforth, David

2015-01-01

The vast amount and diversity of the content shared on social media can pose a challenge for any business wanting to use it to identify potential customers. In this paper, our aim is to investigate the use of both unsupervised and supervised learning methods for target audience classification on Twitter with minimal annotation efforts. Topic domains were automatically discovered from contents shared by followers of an account owner using Twitter Latent Dirichlet Allocation (LDA). A Support Vector Machine (SVM) ensemble was then trained using contents from different account owners of the various topic domains identified by Twitter LDA. Experimental results show that the methods presented are able to successfully identify a target audience with high accuracy. In addition, we show that using a statistical inference approach such as bootstrapping in over-sampling, instead of using random sampling, to construct training datasets can achieve a better classifier in an SVM ensemble. We conclude that such an ensemble system can take advantage of data diversity, which enables real-world applications for differentiating prospective customers from the general audience, leading to business advantage in the crowded social media space. PMID:25874768

Using support vector machine ensembles for target audience classification on Twitter.

PubMed

Lo, Siaw Ling; Chiong, Raymond; Cornforth, David

2015-01-01

The vast amount and diversity of the content shared on social media can pose a challenge for any business wanting to use it to identify potential customers. In this paper, our aim is to investigate the use of both unsupervised and supervised learning methods for target audience classification on Twitter with minimal annotation efforts. Topic domains were automatically discovered from contents shared by followers of an account owner using Twitter Latent Dirichlet Allocation (LDA). A Support Vector Machine (SVM) ensemble was then trained using contents from different account owners of the various topic domains identified by Twitter LDA. Experimental results show that the methods presented are able to successfully identify a target audience with high accuracy. In addition, we show that using a statistical inference approach such as bootstrapping in over-sampling, instead of using random sampling, to construct training datasets can achieve a better classifier in an SVM ensemble. We conclude that such an ensemble system can take advantage of data diversity, which enables real-world applications for differentiating prospective customers from the general audience, leading to business advantage in the crowded social media space.

Classification of prostate cancer grade using temporal ultrasound: in vivo feasibility study

NASA Astrophysics Data System (ADS)

Ghavidel, Sahar; Imani, Farhad; Khallaghi, Siavash; Gibson, Eli; Khojaste, Amir; Gaed, Mena; Moussa, Madeleine; Gomez, Jose A.; Siemens, D. Robert; Leveridge, Michael; Chang, Silvia; Fenster, Aaron; Ward, Aaron D.; Abolmaesumi, Purang; Mousavi, Parvin

2016-03-01

Temporal ultrasound has been shown to have high classification accuracy in differentiating cancer from benign tissue. In this paper, we extend the temporal ultrasound method to classify lower grade Prostate Cancer (PCa) from all other grades. We use a group of nine patients with mostly lower grade PCa, where cancerous regions are also limited. A critical challenge is to train a classifier with limited aggressive cancerous tissue compared to low grade cancerous tissue. To resolve the problem of imbalanced data, we use Synthetic Minority Oversampling Technique (SMOTE) to generate synthetic samples for the minority class. We calculate spectral features of temporal ultrasound data and perform feature selection using Random Forests. In leave-one-patient-out cross-validation strategy, an area under receiver operating characteristic curve (AUC) of 0.74 is achieved with overall sensitivity and specificity of 70%. Using an unsupervised learning approach prior to proposed method improves sensitivity and AUC to 80% and 0.79. This work represents promising results to classify lower and higher grade PCa with limited cancerous training samples, using temporal ultrasound.

An Auscultaiting Diagnosis Support System for Assessing Hemodialysis Shunt Stenosis by Using Self-organizing Map

NASA Astrophysics Data System (ADS)

Suzuki, Yutaka; Fukasawa, Mizuya; Sakata, Osamu; Kato, Hatsuhiro; Hattori, Asobu; Kato, Takaya

Vascular access for hemodialysis is a lifeline for over 280,000 chronic renal failure patients in Japan. Early detection of stenosis may facilitate long-term use of hemodialysis shunts. Stethoscope auscultation of vascular murmurs has some utility in the assessment of access patency; however, the sensitivity of this diagnostic approach is skill dependent. This study proposes a novel diagnosis support system to detect stenosis by using vascular murmurs. The system is based on a self-organizing map (SOM) and short-time maximum entropy method (STMEM) for data analysis. SOM is an artificial neural network, which is trained using unsupervised learning to produce a feature map that is useful for visualizing the analogous relationship between input data. The author recorded vascular murmurs before and after percutaneous transluminal angioplasty (PTA). The SOM-based classification was consistent with to the classification based on MEM spectral and spectrogram characteristics. The ratio of pre-PTA murmurs in the stenosis category was much higher than the post-PTA murmurs. The results suggest that the proposed method may be an effective tool in the determination of shunt stenosis.

Digital image sensor-based assessment of the status of oat (Avena sativa L.) crops after frost damage.

PubMed

Macedo-Cruz, Antonia; Pajares, Gonzalo; Santos, Matilde; Villegas-Romero, Isidro

2011-01-01

The aim of this paper is to classify the land covered with oat crops, and the quantification of frost damage on oats, while plants are still in the flowering stage. The images are taken by a digital colour camera CCD-based sensor. Unsupervised classification methods are applied because the plants present different spectral signatures, depending on two main factors: illumination and the affected state. The colour space used in this application is CIELab, based on the decomposition of the colour in three channels, because it is the closest to human colour perception. The histogram of each channel is successively split into regions by thresholding. The best threshold to be applied is automatically obtained as a combination of three thresholding strategies: (a) Otsu's method, (b) Isodata algorithm, and (c) Fuzzy thresholding. The fusion of these automatic thresholding techniques and the design of the classification strategy are some of the main findings of the paper, which allows an estimation of the damages and a prediction of the oat production.

Sleep in patients with disorders of consciousness characterized by means of machine learning

PubMed Central

Lechinger, Julia; Wislowska, Malgorzata; Blume, Christine; Ott, Peter; Wegenkittl, Stefan; del Giudice, Renata; Heib, Dominik P. J.; Mayer, Helmut A.; Laureys, Steven; Pichler, Gerald; Schabus, Manuel

2018-01-01

Sleep has been proposed to indicate preserved residual brain functioning in patients suffering from disorders of consciousness (DOC) after awakening from coma. However, a reliable characterization of sleep patterns in this clinical population continues to be challenging given severely altered brain oscillations, frequent and extended artifacts in clinical recordings and the absence of established staging criteria. In the present study, we try to address these issues and investigate the usefulness of a multivariate machine learning technique based on permutation entropy, a complexity measure. Specifically, we used long-term polysomnography (PSG), along with video recordings in day and night periods in a sample of 23 DOC; 12 patients were diagnosed as Unresponsive Wakefulness Syndrome (UWS) and 11 were diagnosed as Minimally Conscious State (MCS). Eight hour PSG recordings of healthy sleepers (N = 26) were additionally used for training and setting parameters of supervised and unsupervised model, respectively. In DOC, the supervised classification (wake, N1, N2, N3 or REM) was validated using simultaneous videos which identified periods with prolonged eye opening or eye closure.The supervised classification revealed that out of the 23 subjects, 11 patients (5 MCS and 6 UWS) yielded highly accurate classification with an average F1-score of 0.87 representing high overlap between the classifier predicting sleep (i.e. one of the 4 sleep stages) and closed eyes. Furthermore, the unsupervised approach revealed a more complex pattern of sleep-wake stages during the night period in the MCS group, as evidenced by the presence of several distinct clusters. In contrast, in UWS patients no such clustering was found. Altogether, we present a novel data-driven method, based on machine learning that can be used to gain new and unambiguous insights into sleep organization and residual brain functioning of patients with DOC. PMID:29293607

Automated classifications of topography from DEMs by an unsupervised nested-means algorithm and a three-part geometric signature

NASA Astrophysics Data System (ADS)

Iwahashi, Junko; Pike, Richard J.

2007-05-01

An iterative procedure that implements the classification of continuous topography as a problem in digital image-processing automatically divides an area into categories of surface form; three taxonomic criteria-slope gradient, local convexity, and surface texture-are calculated from a square-grid digital elevation model (DEM). The sequence of programmed operations combines twofold-partitioned maps of the three variables converted to greyscale images, using the mean of each variable as the dividing threshold. To subdivide increasingly subtle topography, grid cells sloping at less than mean gradient of the input DEM are classified by designating mean values of successively lower-sloping subsets of the study area (nested means) as taxonomic thresholds, thereby increasing the number of output categories from the minimum 8 to 12 or 16. Program output is exemplified by 16 topographic types for the world at 1-km spatial resolution (SRTM30 data), the Japanese Islands at 270 m, and part of Hokkaido at 55 m. Because the procedure is unsupervised and reflects frequency distributions of the input variables rather than pre-set criteria, the resulting classes are undefined and must be calibrated empirically by subsequent analysis. Maps of the example classifications reflect physiographic regions, geological structure, and landform as well as slope materials and processes; fine-textured terrain categories tend to correlate with erosional topography or older surfaces, coarse-textured classes with areas of little dissection. In Japan the resulting classes approximate landform types mapped from airphoto analysis, while in the Americas they create map patterns resembling Hammond's terrain types or surface-form classes; SRTM30 output for the United States compares favorably with Fenneman's physical divisions. Experiments are suggested for further developing the method; the Arc/Info AML and the map of terrain classes for the world are available as online downloads.

Automated classifications of topography from DEMs by an unsupervised nested-means algorithm and a three-part geometric signature

USGS Publications Warehouse

Iwahashi, J.; Pike, R.J.

2007-01-01

An iterative procedure that implements the classification of continuous topography as a problem in digital image-processing automatically divides an area into categories of surface form; three taxonomic criteria-slope gradient, local convexity, and surface texture-are calculated from a square-grid digital elevation model (DEM). The sequence of programmed operations combines twofold-partitioned maps of the three variables converted to greyscale images, using the mean of each variable as the dividing threshold. To subdivide increasingly subtle topography, grid cells sloping at less than mean gradient of the input DEM are classified by designating mean values of successively lower-sloping subsets of the study area (nested means) as taxonomic thresholds, thereby increasing the number of output categories from the minimum 8 to 12 or 16. Program output is exemplified by 16 topographic types for the world at 1-km spatial resolution (SRTM30 data), the Japanese Islands at 270??m, and part of Hokkaido at 55??m. Because the procedure is unsupervised and reflects frequency distributions of the input variables rather than pre-set criteria, the resulting classes are undefined and must be calibrated empirically by subsequent analysis. Maps of the example classifications reflect physiographic regions, geological structure, and landform as well as slope materials and processes; fine-textured terrain categories tend to correlate with erosional topography or older surfaces, coarse-textured classes with areas of little dissection. In Japan the resulting classes approximate landform types mapped from airphoto analysis, while in the Americas they create map patterns resembling Hammond's terrain types or surface-form classes; SRTM30 output for the United States compares favorably with Fenneman's physical divisions. Experiments are suggested for further developing the method; the Arc/Info AML and the map of terrain classes for the world are available as online downloads. ?? 2006 Elsevier B.V. All rights reserved.

Antiretroviral therapy suppressed participants with low CD4+ T-cell counts segregate according to opposite immunological phenotypes

PubMed Central

Pérez-Santiago, Josué; Ouchi, Dan; Urrea, Victor; Carrillo, Jorge; Cabrera, Cecilia; Villà-Freixa, Jordi; Puig, Jordi; Paredes, Roger; Negredo, Eugènia; Clotet, Bonaventura; Massanella, Marta; Blanco, Julià

2016-01-01

Background: The failure to increase CD4+ T-cell counts in some antiretroviral therapy suppressed participants (immunodiscordance) has been related to perturbed CD4+ T-cell homeostasis and impacts clinical evolution. Methods: We evaluated different definitions of immunodiscordance based on CD4+ T-cell counts (cutoff) or CD4+ T-cell increases from nadir value (ΔCD4) using supervised random forest classification of 74 immunological and clinical variables from 196 antiretroviral therapy suppressed individuals. Unsupervised clustering was performed using relevant variables identified in the supervised approach from 191 individuals. Results: Cutoff definition of CD4+ cell count 400 cells/μl performed better than any other definition in segregating immunoconcordant and immunodiscordant individuals (85% accuracy), using markers of activation, nadir and death of CD4+ T cells. Unsupervised clustering of relevant variables using this definition revealed large heterogeneity between immunodiscordant individuals and segregated participants into three distinct subgroups with distinct production, programmed cell-death protein-1 (PD-1) expression, activation and death of T cells. Surprisingly, a nonnegligible number of immunodiscordant participants (22%) showed high frequency of recent thymic emigrants and low CD4+ T-cell activation and death, very similar to immunoconcordant participants. Notably, human leukocyte antigen - antigen D related (HLA-DR) PD-1 and CD45RA expression in CD4+ T cells allowed reproducing subgroup segregation (81.4% accuracy). Despite sharp immunological differences, similar and persistently low CD4+ values were maintained in these participants over time. Conclusion: A cutoff value of CD4+ T-cell count 400 cells/μl classified better immunodiscordant and immunoconcordant individuals than any ΔCD4 classification. Immunodiscordance may present several, even opposite, immunological patterns that are identified by a simple immunological follow-up. Subgroup classification may help clinicians to delineate diverse approaches that may be needed to boost CD4+ T-cell recovery. PMID:27427875

Improved regional-scale Brazilian cropping systems' mapping based on a semi-automatic object-based clustering approach

NASA Astrophysics Data System (ADS)

Bellón, Beatriz; Bégué, Agnès; Lo Seen, Danny; Lebourgeois, Valentine; Evangelista, Balbino Antônio; Simões, Margareth; Demonte Ferraz, Rodrigo Peçanha

2018-06-01

Cropping systems' maps at fine scale over large areas provide key information for further agricultural production and environmental impact assessments, and thus represent a valuable tool for effective land-use planning. There is, therefore, a growing interest in mapping cropping systems in an operational manner over large areas, and remote sensing approaches based on vegetation index time series analysis have proven to be an efficient tool. However, supervised pixel-based approaches are commonly adopted, requiring resource consuming field campaigns to gather training data. In this paper, we present a new object-based unsupervised classification approach tested on an annual MODIS 16-day composite Normalized Difference Vegetation Index time series and a Landsat 8 mosaic of the State of Tocantins, Brazil, for the 2014-2015 growing season. Two variants of the approach are compared: an hyperclustering approach, and a landscape-clustering approach involving a previous stratification of the study area into landscape units on which the clustering is then performed. The main cropping systems of Tocantins, characterized by the crop types and cropping patterns, were efficiently mapped with the landscape-clustering approach. Results show that stratification prior to clustering significantly improves the classification accuracies for underrepresented and sparsely distributed cropping systems. This study illustrates the potential of unsupervised classification for large area cropping systems' mapping and contributes to the development of generic tools for supporting large-scale agricultural monitoring across regions.

Color normalization of histology slides using graph regularized sparse NMF

NASA Astrophysics Data System (ADS)

Sha, Lingdao; Schonfeld, Dan; Sethi, Amit

2017-03-01

Computer based automatic medical image processing and quantification are becoming popular in digital pathology. However, preparation of histology slides can vary widely due to differences in staining equipment, procedures and reagents, which can reduce the accuracy of algorithms that analyze their color and texture information. To re- duce the unwanted color variations, various supervised and unsupervised color normalization methods have been proposed. Compared with supervised color normalization methods, unsupervised color normalization methods have advantages of time and cost efficient and universal applicability. Most of the unsupervised color normaliza- tion methods for histology are based on stain separation. Based on the fact that stain concentration cannot be negative and different parts of the tissue absorb different stains, nonnegative matrix factorization (NMF), and particular its sparse version (SNMF), are good candidates for stain separation. However, most of the existing unsupervised color normalization method like PCA, ICA, NMF and SNMF fail to consider important information about sparse manifolds that its pixels occupy, which could potentially result in loss of texture information during color normalization. Manifold learning methods like Graph Laplacian have proven to be very effective in interpreting high-dimensional data. In this paper, we propose a novel unsupervised stain separation method called graph regularized sparse nonnegative matrix factorization (GSNMF). By considering the sparse prior of stain concentration together with manifold information from high-dimensional image data, our method shows better performance in stain color deconvolution than existing unsupervised color deconvolution methods, especially in keeping connected texture information. To utilized the texture information, we construct a nearest neighbor graph between pixels within a spatial area of an image based on their distances using heat kernal in lαβ space. The representation of a pixel in the stain density space is constrained to follow the feature distance of the pixel to pixels in the neighborhood graph. Utilizing color matrix transfer method with the stain concentrations found using our GSNMF method, the color normalization performance was also better than existing methods.

Unsupervised Extraction of Diagnosis Codes from EMRs Using Knowledge-Based and Extractive Text Summarization Techniques

PubMed Central

Kavuluru, Ramakanth; Han, Sifei; Harris, Daniel

2017-01-01

Diagnosis codes are extracted from medical records for billing and reimbursement and for secondary uses such as quality control and cohort identification. In the US, these codes come from the standard terminology ICD-9-CM derived from the international classification of diseases (ICD). ICD-9 codes are generally extracted by trained human coders by reading all artifacts available in a patient’s medical record following specific coding guidelines. To assist coders in this manual process, this paper proposes an unsupervised ensemble approach to automatically extract ICD-9 diagnosis codes from textual narratives included in electronic medical records (EMRs). Earlier attempts on automatic extraction focused on individual documents such as radiology reports and discharge summaries. Here we use a more realistic dataset and extract ICD-9 codes from EMRs of 1000 inpatient visits at the University of Kentucky Medical Center. Using named entity recognition (NER), graph-based concept-mapping of medical concepts, and extractive text summarization techniques, we achieve an example based average recall of 0.42 with average precision 0.47; compared with a baseline of using only NER, we notice a 12% improvement in recall with the graph-based approach and a 7% improvement in precision using the extractive text summarization approach. Although diagnosis codes are complex concepts often expressed in text with significant long range non-local dependencies, our present work shows the potential of unsupervised methods in extracting a portion of codes. As such, our findings are especially relevant for code extraction tasks where obtaining large amounts of training data is difficult. PMID:28748227

Evaluation of Machine Learning Algorithms for Classification of Primary Biological Aerosol using a new UV-LIF spectrometer

NASA Astrophysics Data System (ADS)

Ruske, S. T.; Topping, D. O.; Foot, V. E.; Kaye, P. H.; Stanley, W. R.; Morse, A. P.; Crawford, I.; Gallagher, M. W.

2016-12-01

Characterisation of bio-aerosols has important implications within Environment and Public Health sectors. Recent developments in Ultra-Violet Light Induced Fluorescence (UV-LIF) detectors such as the Wideband Integrated bio-aerosol Spectrometer (WIBS) and the newly introduced Multiparameter bio-aerosol Spectrometer (MBS) has allowed for the real time collection of fluorescence, size and morphology measurements for the purpose of discriminating between bacteria, fungal Spores and pollen. This new generation of instruments has enabled ever-larger data sets to be compiled with the aim of studying more complex environments, yet the algorithms used for specie classification remain largely invalidated. It is therefore imperative that we validate the performance of different algorithms that can be used for the task of classification, which is the focus of this study. For unsupervised learning we test Hierarchical Agglomerative Clustering with various different linkages. For supervised learning, ten methods were tested; including decision trees, ensemble methods: Random Forests, Gradient Boosting and AdaBoost; two implementations for support vector machines: libsvm and liblinear; Gaussian methods: Gaussian naïve Bayesian, quadratic and linear discriminant analysis and finally the k-nearest neighbours algorithm. The methods were applied to two different data sets measured using a new Multiparameter bio-aerosol Spectrometer. We find that clustering, in general, performs slightly worse than the supervised learning methods correctly classifying, at best, only 72.7 and 91.1 percent for the two data sets. For supervised learning the gradient boosting algorithm was found to be the most effective, on average correctly classifying 88.1 and 97.8 percent of the testing data respectively across the two data sets. We discuss the wider relevance of these results with regards to challenging existing classification in real-world environments.

Multi-channel EEG-based sleep stage classification with joint collaborative representation and multiple kernel learning.

PubMed

Shi, Jun; Liu, Xiao; Li, Yan; Zhang, Qi; Li, Yingjie; Ying, Shihui

2015-10-30

Electroencephalography (EEG) based sleep staging is commonly used in clinical routine. Feature extraction and representation plays a crucial role in EEG-based automatic classification of sleep stages. Sparse representation (SR) is a state-of-the-art unsupervised feature learning method suitable for EEG feature representation. Collaborative representation (CR) is an effective data coding method used as a classifier. Here we use CR as a data representation method to learn features from the EEG signal. A joint collaboration model is established to develop a multi-view learning algorithm, and generate joint CR (JCR) codes to fuse and represent multi-channel EEG signals. A two-stage multi-view learning-based sleep staging framework is then constructed, in which JCR and joint sparse representation (JSR) algorithms first fuse and learning the feature representation from multi-channel EEG signals, respectively. Multi-view JCR and JSR features are then integrated and sleep stages recognized by a multiple kernel extreme learning machine (MK-ELM) algorithm with grid search. The proposed two-stage multi-view learning algorithm achieves superior performance for sleep staging. With a K-means clustering based dictionary, the mean classification accuracy, sensitivity and specificity are 81.10 ± 0.15%, 71.42 ± 0.66% and 94.57 ± 0.07%, respectively; while with the dictionary learned using the submodular optimization method, they are 80.29 ± 0.22%, 71.26 ± 0.78% and 94.38 ± 0.10%, respectively. The two-stage multi-view learning based sleep staging framework outperforms all other classification methods compared in this work, while JCR is superior to JSR. The proposed multi-view learning framework has the potential for sleep staging based on multi-channel or multi-modality polysomnography signals. Copyright © 2015 Elsevier B.V. All rights reserved.

Automatic segmentation of brain MRI in high-dimensional local and non-local feature space based on sparse representation.

PubMed

Khalilzadeh, Mohammad Mahdi; Fatemizadeh, Emad; Behnam, Hamid

2013-06-01

Automatic extraction of the varying regions of magnetic resonance images is required as a prior step in a diagnostic intelligent system. The sparsest representation and high-dimensional feature are provided based on learned dictionary. The classification is done by employing the technique that computes the reconstruction error locally and non-locally of each pixel. The acquired results from the real and simulated images are superior to the best MRI segmentation method with regard to the stability advantages. In addition, it is segmented exactly through a formula taken from the distance and sparse factors. Also, it is done automatically taking sparse factor in unsupervised clustering methods whose results have been improved. Copyright © 2013 Elsevier Inc. All rights reserved.

Wide field imaging - I. Applications of neural networks to object detection and star/galaxy classification

NASA Astrophysics Data System (ADS)

Andreon, S.; Gargiulo, G.; Longo, G.; Tagliaferri, R.; Capuano, N.

2000-12-01

Astronomical wide-field imaging performed with new large-format CCD detectors poses data reduction problems of unprecedented scale, which are difficult to deal with using traditional interactive tools. We present here NExt (Neural Extractor), a new neural network (NN) based package capable of detecting objects and performing both deblending and star/galaxy classification in an automatic way. Traditionally, in astronomical images, objects are first distinguished from the noisy background by searching for sets of connected pixels having brightnesses above a given threshold; they are then classified as stars or as galaxies through diagnostic diagrams having variables chosen according to the astronomer's taste and experience. In the extraction step, assuming that images are well sampled, NExt requires only the simplest a priori definition of `what an object is' (i.e. it keeps all structures composed of more than one pixel) and performs the detection via an unsupervised NN, approaching detection as a clustering problem that has been thoroughly studied in the artificial intelligence literature. The first part of the NExt procedure consists of an optimal compression of the redundant information contained in the pixels via a mapping from pixel intensities to a subspace individualized through principal component analysis. At magnitudes fainter than the completeness limit, stars are usually almost indistinguishable from galaxies, and therefore the parameters characterizing the two classes do not lie in disconnected subspaces, thus preventing the use of unsupervised methods. We therefore adopted a supervised NN (i.e. a NN that first finds the rules to classify objects from examples and then applies them to the whole data set). In practice, each object is classified depending on its membership of the regions mapping the input feature space in the training set. In order to obtain an objective and reliable classification, instead of using an arbitrarily defined set of features we use a NN to select the most significant features among the large number of measured ones, and then we use these selected features to perform the classification task. In order to optimize the performance of the system, we implemented and tested several different models of NN. The comparison of the NExt performance with that of the best detection and classification package known to the authors (SExtractor) shows that NExt is at least as effective as the best traditional packages.

Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin.

PubMed

Afanasyev, Pavel; Seer-Linnemayr, Charlotte; Ravelli, Raimond B G; Matadeen, Rishi; De Carlo, Sacha; Alewijnse, Bart; Portugal, Rodrigo V; Pannu, Navraj S; Schatz, Michael; van Heel, Marin

2017-09-01

Single-particle cryogenic electron microscopy (cryo-EM) can now yield near-atomic resolution structures of biological complexes. However, the reference-based alignment algorithms commonly used in cryo-EM suffer from reference bias, limiting their applicability (also known as the 'Einstein from random noise' problem). Low-dose cryo-EM therefore requires robust and objective approaches to reveal the structural information contained in the extremely noisy data, especially when dealing with small structures. A reference-free pipeline is presented for obtaining near-atomic resolution three-dimensional reconstructions from heterogeneous ('four-dimensional') cryo-EM data sets. The methodologies integrated in this pipeline include a posteriori camera correction, movie-based full-data-set contrast transfer function determination, movie-alignment algorithms, (Fourier-space) multivariate statistical data compression and unsupervised classification, 'random-startup' three-dimensional reconstructions, four-dimensional structural refinements and Fourier shell correlation criteria for evaluating anisotropic resolution. The procedures exclusively use information emerging from the data set itself, without external 'starting models'. Euler-angle assignments are performed by angular reconstitution rather than by the inherently slower projection-matching approaches. The comprehensive 'ABC-4D' pipeline is based on the two-dimensional reference-free 'alignment by classification' (ABC) approach, where similar images in similar orientations are grouped by unsupervised classification. Some fundamental differences between X-ray crystallography versus single-particle cryo-EM data collection and data processing are discussed. The structure of the giant haemoglobin from Lumbricus terrestris at a global resolution of ∼3.8 Å is presented as an example of the use of the ABC-4D procedure.

A simple and unsupervised semi-automatic workflow to detect shallow landslides in Alpine areas based on VHR remote sensing data

NASA Astrophysics Data System (ADS)

Amato, Gabriele; Eisank, Clemens; Albrecht, Florian

2017-04-01

Landslide detection from Earth observation imagery is an important preliminary work for landslide mapping, landslide inventories and landslide hazard assessment. In this context, the object-based image analysis (OBIA) concept has been increasingly used over the last decade. Within the framework of the Land@Slide project (Earth observation based landslide mapping: from methodological developments to automated web-based information delivery) a simple, unsupervised, semi-automatic and object-based approach for the detection of shallow landslides has been developed and implemented in the InterIMAGE open-source software. The method was applied to an Alpine case study in western Austria, exploiting spectral information from pansharpened 4-bands WorldView-2 satellite imagery (0.5 m spatial resolution) in combination with digital elevation models. First, we divided the image into sub-images, i.e. tiles, and then we applied the workflow to each of them without changing the parameters. The workflow was implemented as top-down approach: at the image tile level, an over-classification of the potential landslide area was produced; the over-estimated area was re-segmented and re-classified by several processing cycles until most false positive objects have been eliminated. In every step a Baatz algorithm based segmentation generates polygons "candidates" to be landslides. At the same time, the average values of normalized difference vegetation index (NDVI) and brightness are calculated for these polygons; after that, these values are used as thresholds to perform an objects selection in order to improve the quality of the classification results. In combination, also empirically determined values of slope and roughness are used in the selection process. Results for each tile were merged to obtain the landslide map for the test area. For final validation, the landslide map was compared to a geological map and a supervised landslide classification in order to estimate its accuracy. Results for the test area showed that the proposed method is capable of accurately distinguishing landslides from roofs and trees. Implementation of the workflow into InterIMAGE was straightforward. We conclude that the method is able to extract landslides in forested areas, but that there is still room for improvements concerning the extraction in non-forested high-alpine regions.

A Fast Implementation of the ISOCLUS Algorithm

NASA Technical Reports Server (NTRS)

Memarsadeghi, Nargess; Mount, David M.; Netanyahu, Nathan S.; LeMoigne, Jacqueline

2003-01-01

Unsupervised clustering is a fundamental tool in numerous image processing and remote sensing applications. For example, unsupervised clustering is often used to obtain vegetation maps of an area of interest. This approach is useful when reliable training data are either scarce or expensive, and when relatively little a priori information about the data is available. Unsupervised clustering methods play a significant role in the pursuit of unsupervised classification. One of the most popular and widely used clustering schemes for remote sensing applications is the ISOCLUS algorithm, which is based on the ISODATA method. The algorithm is given a set of n data points (or samples) in d-dimensional space, an integer k indicating the initial number of clusters, and a number of additional parameters. The general goal is to compute a set of cluster centers in d-space. Although there is no specific optimization criterion, the algorithm is similar in spirit to the well known k-means clustering method in which the objective is to minimize the average squared distance of each point to its nearest center, called the average distortion. One significant feature of ISOCLUS over k-means is that clusters may be merged or split, and so the final number of clusters may be different from the number k supplied as part of the input. This algorithm will be described in later in this paper. The ISOCLUS algorithm can run very slowly, particularly on large data sets. Given its wide use in remote sensing, its efficient computation is an important goal. We have developed a fast implementation of the ISOCLUS algorithm. Our improvement is based on a recent acceleration to the k-means algorithm, the filtering algorithm, by Kanungo et al.. They showed that, by storing the data in a kd-tree, it was possible to significantly reduce the running time of k-means. We have adapted this method for the ISOCLUS algorithm. For technical reasons, which are explained later, it is necessary to make a minor modification to the ISOCLUS specification. We provide empirical evidence, on both synthetic and Landsat image data sets, that our algorithm's performance is essentially the same as that of ISOCLUS, but with significantly lower running times. We show that our algorithm runs from 3 to 30 times faster than a straightforward implementation of ISOCLUS. Our adaptation of the filtering algorithm involves the efficient computation of a number of cluster statistics that are needed for ISOCLUS, but not for k-means.

Methods for automatically analyzing humpback song units.

PubMed

Rickwood, Peter; Taylor, Andrew

2008-03-01

This paper presents mathematical techniques for automatically extracting and analyzing bioacoustic signals. Automatic techniques are described for isolation of target signals from background noise, extraction of features from target signals and unsupervised classification (clustering) of the target signals based on these features. The only user-provided inputs, other than raw sound, is an initial set of signal processing and control parameters. Of particular note is that the number of signal categories is determined automatically. The techniques, applied to hydrophone recordings of humpback whales (Megaptera novaeangliae), produce promising initial results, suggesting that they may be of use in automated analysis of not only humpbacks, but possibly also in other bioacoustic settings where automated analysis is desirable.

Supervised Machine Learning for Regionalization of Environmental Data: Distribution of Uranium in Groundwater in Ukraine

NASA Astrophysics Data System (ADS)

Govorov, Michael; Gienko, Gennady; Putrenko, Viktor

2018-05-01

In this paper, several supervised machine learning algorithms were explored to define homogeneous regions of con-centration of uranium in surface waters in Ukraine using multiple environmental parameters. The previous study was focused on finding the primary environmental parameters related to uranium in ground waters using several methods of spatial statistics and unsupervised classification. At this step, we refined the regionalization using Artifi-cial Neural Networks (ANN) techniques including Multilayer Perceptron (MLP), Radial Basis Function (RBF), and Convolutional Neural Network (CNN). The study is focused on building local ANN models which may significantly improve the prediction results of machine learning algorithms by taking into considerations non-stationarity and autocorrelation in spatial data.

Classification Accuracy Increase Using Multisensor Data Fusion

NASA Astrophysics Data System (ADS)

Makarau, A.; Palubinskas, G.; Reinartz, P.

2011-09-01

The practical use of very high resolution visible and near-infrared (VNIR) data is still growing (IKONOS, Quickbird, GeoEye-1, etc.) but for classification purposes the number of bands is limited in comparison to full spectral imaging. These limitations may lead to the confusion of materials such as different roofs, pavements, roads, etc. and therefore may provide wrong interpretation and use of classification products. Employment of hyperspectral data is another solution, but their low spatial resolution (comparing to multispectral data) restrict their usage for many applications. Another improvement can be achieved by fusion approaches of multisensory data since this may increase the quality of scene classification. Integration of Synthetic Aperture Radar (SAR) and optical data is widely performed for automatic classification, interpretation, and change detection. In this paper we present an approach for very high resolution SAR and multispectral data fusion for automatic classification in urban areas. Single polarization TerraSAR-X (SpotLight mode) and multispectral data are integrated using the INFOFUSE framework, consisting of feature extraction (information fission), unsupervised clustering (data representation on a finite domain and dimensionality reduction), and data aggregation (Bayesian or neural network). This framework allows a relevant way of multisource data combination following consensus theory. The classification is not influenced by the limitations of dimensionality, and the calculation complexity primarily depends on the step of dimensionality reduction. Fusion of single polarization TerraSAR-X, WorldView-2 (VNIR or full set), and Digital Surface Model (DSM) data allow for different types of urban objects to be classified into predefined classes of interest with increased accuracy. The comparison to classification results of WorldView-2 multispectral data (8 spectral bands) is provided and the numerical evaluation of the method in comparison to other established methods illustrates the advantage in the classification accuracy for many classes such as buildings, low vegetation, sport objects, forest, roads, rail roads, etc.

ECG signal analysis through hidden Markov models.

PubMed

Andreão, Rodrigo V; Dorizzi, Bernadette; Boudy, Jérôme

2006-08-01

This paper presents an original hidden Markov model (HMM) approach for online beat segmentation and classification of electrocardiograms. The HMM framework has been visited because of its ability of beat detection, segmentation and classification, highly suitable to the electrocardiogram (ECG) problem. Our approach addresses a large panel of topics some of them never studied before in other HMM related works: waveforms modeling, multichannel beat segmentation and classification, and unsupervised adaptation to the patient's ECG. The performance was evaluated on the two-channel QT database in terms of waveform segmentation precision, beat detection and classification. Our waveform segmentation results compare favorably to other systems in the literature. We also obtained high beat detection performance with sensitivity of 99.79% and a positive predictivity of 99.96%, using a test set of 59 recordings. Moreover, premature ventricular contraction beats were detected using an original classification strategy. The results obtained validate our approach for real world application.

The effect of the atmosphere on the classification of satellite observations to identify surface features

NASA Technical Reports Server (NTRS)

Fraser, R. S.; Bahethi, O. P.; Al-Abbas, A. H.

1977-01-01

The effect of differences in atmospheric turbidity on the classification of Landsat 1 observations of a rural scene is presented. The observations are classified by an unsupervised clustering technique. These clusters serve as a training set for use of a maximum-likelihood algorithm. The measured radiances in each of the four spectral bands are then changed by amounts measured by Landsat 1. These changes can be associated with a decrease in atmospheric turbidity by a factor of 1.3. The classification of 22% of the pixels changes as a result of the modification. The modified observations are then reclassified as an independent set. Only 3% of the pixels have a different classification than the unmodified set. Hence, if classification errors of rural areas are not to exceed 15%, a new training set has to be developed whenever the difference in turbidity between the training and test sets reaches unity.

Wildlife management by habitat units: A preliminary plan of action

NASA Technical Reports Server (NTRS)

Frentress, C. D.; Frye, R. G.

1975-01-01

Procedures for yielding vegetation type maps were developed using LANDSAT data and a computer assisted classification analysis (LARSYS) to assist in managing populations of wildlife species by defined area units. Ground cover in Travis County, Texas was classified on two occasions using a modified version of the unsupervised approach to classification. The first classification produced a total of 17 classes. Examination revealed that further grouping was justified. A second analysis produced 10 classes which were displayed on printouts which were later color-coded. The final classification was 82 percent accurate. While the classification map appeared to satisfactorily depict the existing vegetation, two classes were determined to contain significant error. The major sources of error could have been eliminated by stratifying cluster sites more closely among previously mapped soil associations that are identified with particular plant associations and by precisely defining class nomenclature using established criteria early in the analysis.

SUSTAIN: a network model of category learning.

PubMed

Love, Bradley C; Medin, Douglas L; Gureckis, Todd M

2004-04-01

SUSTAIN (Supervised and Unsupervised STratified Adaptive Incremental Network) is a model of how humans learn categories from examples. SUSTAIN initially assumes a simple category structure. If simple solutions prove inadequate and SUSTAIN is confronted with a surprising event (e.g., it is told that a bat is a mammal instead of a bird), SUSTAIN recruits an additional cluster to represent the surprising event. Newly recruited clusters are available to explain future events and can themselves evolve into prototypes-attractors-rules. SUSTAIN's discovery of category substructure is affected not only by the structure of the world but by the nature of the learning task and the learner's goals. SUSTAIN successfully extends category learning models to studies of inference learning, unsupervised learning, category construction, and contexts in which identification learning is faster than classification learning.

Classification of grass pollen through the quantitative analysis of surface ornamentation and texture.

PubMed

Mander, Luke; Li, Mao; Mio, Washington; Fowlkes, Charless C; Punyasena, Surangi W

2013-11-07

Taxonomic identification of pollen and spores uses inherently qualitative descriptions of morphology. Consequently, identifications are restricted to categories that can be reliably classified by multiple analysts, resulting in the coarse taxonomic resolution of the pollen and spore record. Grass pollen represents an archetypal example; it is not routinely identified below family level. To address this issue, we developed quantitative morphometric methods to characterize surface ornamentation and classify grass pollen grains. This produces a means of quantifying morphological features that are traditionally described qualitatively. We used scanning electron microscopy to image 240 specimens of pollen from 12 species within the grass family (Poaceae). We classified these species by developing algorithmic features that quantify the size and density of sculptural elements on the pollen surface, and measure the complexity of the ornamentation they form. These features yielded a classification accuracy of 77.5%. In comparison, a texture descriptor based on modelling the statistical distribution of brightness values in image patches yielded a classification accuracy of 85.8%, and seven human subjects achieved accuracies between 68.33 and 81.67%. The algorithmic features we developed directly relate to biologically meaningful features of grass pollen morphology, and could facilitate direct interpretation of unsupervised classification results from fossil material.

Use of topographic and climatological models in a geographical data base to improve Landsat MSS classification for Olympic National Park

NASA Technical Reports Server (NTRS)

Cibula, William G.; Nyquist, Maurice O.

1987-01-01

An unsupervised computer classification of vegetation/landcover of Olympic National Park and surrounding environs was initially carried out using four bands of Landsat MSS data. The primary objective of the project was to derive a level of landcover classifications useful for park management applications while maintaining an acceptably high level of classification accuracy. Initially, nine generalized vegetation/landcover classes were derived. Overall classification accuracy was 91.7 percent. In an attempt to refine the level of classification, a geographic information system (GIS) approach was employed. Topographic data and watershed boundaries (inferred precipitation/temperature) data were registered with the Landsat MSS data. The resultant boolean operations yielded 21 vegetation/landcover classes while maintaining the same level of classification accuracy. The final classification provided much better identification and location of the major forest types within the park at the same high level of accuracy, and these met the project objective. This classification could now become inputs into a GIS system to help provide answers to park management coupled with other ancillary data programs such as fire management.

Latent variable method for automatic adaptation to background states in motor imagery BCI

NASA Astrophysics Data System (ADS)

Dagaev, Nikolay; Volkova, Ksenia; Ossadtchi, Alexei

2018-02-01

Objective. Brain-computer interface (BCI) systems are known to be vulnerable to variabilities in background states of a user. Usually, no detailed information on these states is available even during the training stage. Thus there is a need in a method which is capable of taking background states into account in an unsupervised way. Approach. We propose a latent variable method that is based on a probabilistic model with a discrete latent variable. In order to estimate the model’s parameters, we suggest to use the expectation maximization algorithm. The proposed method is aimed at assessing characteristics of background states without any corresponding data labeling. In the context of asynchronous motor imagery paradigm, we applied this method to the real data from twelve able-bodied subjects with open/closed eyes serving as background states. Main results. We found that the latent variable method improved classification of target states compared to the baseline method (in seven of twelve subjects). In addition, we found that our method was also capable of background states recognition (in six of twelve subjects). Significance. Without any supervised information on background states, the latent variable method provides a way to improve classification in BCI by taking background states into account at the training stage and then by making decisions on target states weighted by posterior probabilities of background states at the prediction stage.

Teacher and learner: Supervised and unsupervised learning in communities.

PubMed

Shafto, Michael G; Seifert, Colleen M

2015-01-01

How far can teaching methods go to enhance learning? Optimal methods of teaching have been considered in research on supervised and unsupervised learning. Locally optimal methods are usually hybrids of teaching and self-directed approaches. The costs and benefits of specific methods have been shown to depend on the structure of the learning task, the learners, the teachers, and the environment.

Statewide land cover derived from multiseasonal Landsat TM data: A retrospective of the WISCLAND project

USGS Publications Warehouse

Reese, H.M.; Lillesand, T.M.; Nagel, D.E.; Stewart, J.S.; Goldmann, R.A.; Simmons, T.E.; Chipman, J.W.; Tessar, P.A.

2002-01-01

Landsat Thematic Mapper (TM) data were the basis in production of a statewide land cover data set for Wisconsin, undertaken in partnership with U.S. Geological Survey's (USGS) Gap Analysis Program (GAP). The data set contained seven classes comparable to Anderson Level I and 24 classes comparable to Anderson Level II/III. Twelve scenes of dual-date TM data were processed with methods that included principal components analysis, stratification into spectrally consistent units, separate classification of upland, wetland, and urban areas, and a hybrid supervised/unsupervised classification called "guided clustering." The final data had overall accuracies of 94% for Anderson Level I upland classes, 77% for Level II/III upland classes, and 84% for Level II/III wetland classes. Classification accuracies for deciduous and coniferous forest were 95% and 93%, respectively, and forest species' overall accuracies ranged from 70% to 84%. Limited availability of acceptable imagery necessitated use of an early May date in a majority of scene pairs, perhaps contributing to lower accuracy for upland deciduous forest species. The mixed deciduous/coniferous forest class had the lowest accuracy, most likely due to distinctly classifying a purely mixed class. Mixed forest signatures containing oak were often confused with pure oak. Guided clustering was seen as an efficient classification method, especially at the tree species level, although its success relied in part on image dates, accurate ground troth, and some analyst intervention. ?? 2002 Elsevier Science Inc. All rights reserved.

Geophysical phenomena classification by artificial neural networks

NASA Technical Reports Server (NTRS)

Gough, M. P.; Bruckner, J. R.

1995-01-01

Space science information systems involve accessing vast data bases. There is a need for an automatic process by which properties of the whole data set can be assimilated and presented to the user. Where data are in the form of spectrograms, phenomena can be detected by pattern recognition techniques. Presented are the first results obtained by applying unsupervised Artificial Neural Networks (ANN's) to the classification of magnetospheric wave spectra. The networks used here were a simple unsupervised Hamming network run on a PC and a more sophisticated CALM network run on a Sparc workstation. The ANN's were compared in their geophysical data recognition performance. CALM networks offer such qualities as fast learning, superiority in generalizing, the ability to continuously adapt to changes in the pattern set, and the possibility to modularize the network to allow the inter-relation between phenomena and data sets. This work is the first step toward an information system interface being developed at Sussex, the Whole Information System Expert (WISE). Phenomena in the data are automatically identified and provided to the user in the form of a data occurrence morphology, the Whole Information System Data Occurrence Morphology (WISDOM), along with relationships to other parameters and phenomena.

Lexicon-enhanced sentiment analysis framework using rule-based classification scheme.

PubMed

Asghar, Muhammad Zubair; Khan, Aurangzeb; Ahmad, Shakeel; Qasim, Maria; Khan, Imran Ali

2017-01-01

With the rapid increase in social networks and blogs, the social media services are increasingly being used by online communities to share their views and experiences about a particular product, policy and event. Due to economic importance of these reviews, there is growing trend of writing user reviews to promote a product. Nowadays, users prefer online blogs and review sites to purchase products. Therefore, user reviews are considered as an important source of information in Sentiment Analysis (SA) applications for decision making. In this work, we exploit the wealth of user reviews, available through the online forums, to analyze the semantic orientation of words by categorizing them into +ive and -ive classes to identify and classify emoticons, modifiers, general-purpose and domain-specific words expressed in the public's feedback about the products. However, the un-supervised learning approach employed in previous studies is becoming less efficient due to data sparseness, low accuracy due to non-consideration of emoticons, modifiers, and presence of domain specific words, as they may result in inaccurate classification of users' reviews. Lexicon-enhanced sentiment analysis based on Rule-based classification scheme is an alternative approach for improving sentiment classification of users' reviews in online communities. In addition to the sentiment terms used in general purpose sentiment analysis, we integrate emoticons, modifiers and domain specific terms to analyze the reviews posted in online communities. To test the effectiveness of the proposed method, we considered users reviews in three domains. The results obtained from different experiments demonstrate that the proposed method overcomes limitations of previous methods and the performance of the sentiment analysis is improved after considering emoticons, modifiers, negations, and domain specific terms when compared to baseline methods.

Segmentation methodology for automated classification and differentiation of soft tissues in multiband images of high-resolution ultrasonic transmission tomography.

PubMed

Jeong, Jeong-Won; Shin, Dae C; Do, Synho; Marmarelis, Vasilis Z

2006-08-01

This paper presents a novel segmentation methodology for automated classification and differentiation of soft tissues using multiband data obtained with the newly developed system of high-resolution ultrasonic transmission tomography (HUTT) for imaging biological organs. This methodology extends and combines two existing approaches: the L-level set active contour (AC) segmentation approach and the agglomerative hierarchical kappa-means approach for unsupervised clustering (UC). To prevent the trapping of the current iterative minimization AC algorithm in a local minimum, we introduce a multiresolution approach that applies the level set functions at successively increasing resolutions of the image data. The resulting AC clusters are subsequently rearranged by the UC algorithm that seeks the optimal set of clusters yielding the minimum within-cluster distances in the feature space. The presented results from Monte Carlo simulations and experimental animal-tissue data demonstrate that the proposed methodology outperforms other existing methods without depending on heuristic parameters and provides a reliable means for soft tissue differentiation in HUTT images.

Accelerometer-based on-body sensor localization for health and medical monitoring applications

PubMed Central

Vahdatpour, Alireza; Amini, Navid; Xu, Wenyao; Sarrafzadeh, Majid

2011-01-01

In this paper, we present a technique to recognize the position of sensors on the human body. Automatic on-body device localization ensures correctness and accuracy of measurements in health and medical monitoring systems. In addition, it provides opportunities to improve the performance and usability of ubiquitous devices. Our technique uses accelerometers to capture motion data to estimate the location of the device on the user’s body, using mixed supervised and unsupervised time series analysis methods. We have evaluated our technique with extensive experiments on 25 subjects. On average, our technique achieves 89% accuracy in estimating the location of devices on the body. In order to study the feasibility of classification of left limbs from right limbs (e.g., left arm vs. right arm), we performed analysis, based of which no meaningful classification was observed. Personalized ultraviolet monitoring and wireless transmission power control comprise two immediate applications of our on-body device localization approach. Such applications, along with their corresponding feasibility studies, are discussed. PMID:22347840

Image Classification Workflow Using Machine Learning Methods

NASA Astrophysics Data System (ADS)

Christoffersen, M. S.; Roser, M.; Valadez-Vergara, R.; Fernández-Vega, J. A.; Pierce, S. A.; Arora, R.

2016-12-01

Recent increases in the availability and quality of remote sensing datasets have fueled an increasing number of scientifically significant discoveries based on land use classification and land use change analysis. However, much of the software made to work with remote sensing data products, specifically multispectral images, is commercial and often prohibitively expensive. The free to use solutions that are currently available come bundled up as small parts of much larger programs that are very susceptible to bugs and difficult to install and configure. What is needed is a compact, easy to use set of tools to perform land use analysis on multispectral images. To address this need, we have developed software using the Python programming language with the sole function of land use classification and land use change analysis. We chose Python to develop our software because it is relatively readable, has a large body of relevant third party libraries such as GDAL and Spectral Python, and is free to install and use on Windows, Linux, and Macintosh operating systems. In order to test our classification software, we performed a K-means unsupervised classification, Gaussian Maximum Likelihood supervised classification, and a Mahalanobis Distance based supervised classification. The images used for testing were three Landsat rasters of Austin, Texas with a spatial resolution of 60 meters for the years of 1984 and 1999, and 30 meters for the year 2015. The testing dataset was easily downloaded using the Earth Explorer application produced by the USGS. The software should be able to perform classification based on any set of multispectral rasters with little to no modification. Our software makes the ease of land use classification using commercial software available without an expensive license.

Improving EEG-Based Driver Fatigue Classification Using Sparse-Deep Belief Networks.

PubMed

Chai, Rifai; Ling, Sai Ho; San, Phyo Phyo; Naik, Ganesh R; Nguyen, Tuan N; Tran, Yvonne; Craig, Ashley; Nguyen, Hung T

2017-01-01

This paper presents an improvement of classification performance for electroencephalography (EEG)-based driver fatigue classification between fatigue and alert states with the data collected from 43 participants. The system employs autoregressive (AR) modeling as the features extraction algorithm, and sparse-deep belief networks (sparse-DBN) as the classification algorithm. Compared to other classifiers, sparse-DBN is a semi supervised learning method which combines unsupervised learning for modeling features in the pre-training layer and supervised learning for classification in the following layer. The sparsity in sparse-DBN is achieved with a regularization term that penalizes a deviation of the expected activation of hidden units from a fixed low-level prevents the network from overfitting and is able to learn low-level structures as well as high-level structures. For comparison, the artificial neural networks (ANN), Bayesian neural networks (BNN), and original deep belief networks (DBN) classifiers are used. The classification results show that using AR feature extractor and DBN classifiers, the classification performance achieves an improved classification performance with a of sensitivity of 90.8%, a specificity of 90.4%, an accuracy of 90.6%, and an area under the receiver operating curve (AUROC) of 0.94 compared to ANN (sensitivity at 80.8%, specificity at 77.8%, accuracy at 79.3% with AUC-ROC of 0.83) and BNN classifiers (sensitivity at 84.3%, specificity at 83%, accuracy at 83.6% with AUROC of 0.87). Using the sparse-DBN classifier, the classification performance improved further with sensitivity of 93.9%, a specificity of 92.3%, and an accuracy of 93.1% with AUROC of 0.96. Overall, the sparse-DBN classifier improved accuracy by 13.8, 9.5, and 2.5% over ANN, BNN, and DBN classifiers, respectively.

Improving EEG-Based Driver Fatigue Classification Using Sparse-Deep Belief Networks

PubMed Central

Chai, Rifai; Ling, Sai Ho; San, Phyo Phyo; Naik, Ganesh R.; Nguyen, Tuan N.; Tran, Yvonne; Craig, Ashley; Nguyen, Hung T.

2017-01-01

This paper presents an improvement of classification performance for electroencephalography (EEG)-based driver fatigue classification between fatigue and alert states with the data collected from 43 participants. The system employs autoregressive (AR) modeling as the features extraction algorithm, and sparse-deep belief networks (sparse-DBN) as the classification algorithm. Compared to other classifiers, sparse-DBN is a semi supervised learning method which combines unsupervised learning for modeling features in the pre-training layer and supervised learning for classification in the following layer. The sparsity in sparse-DBN is achieved with a regularization term that penalizes a deviation of the expected activation of hidden units from a fixed low-level prevents the network from overfitting and is able to learn low-level structures as well as high-level structures. For comparison, the artificial neural networks (ANN), Bayesian neural networks (BNN), and original deep belief networks (DBN) classifiers are used. The classification results show that using AR feature extractor and DBN classifiers, the classification performance achieves an improved classification performance with a of sensitivity of 90.8%, a specificity of 90.4%, an accuracy of 90.6%, and an area under the receiver operating curve (AUROC) of 0.94 compared to ANN (sensitivity at 80.8%, specificity at 77.8%, accuracy at 79.3% with AUC-ROC of 0.83) and BNN classifiers (sensitivity at 84.3%, specificity at 83%, accuracy at 83.6% with AUROC of 0.87). Using the sparse-DBN classifier, the classification performance improved further with sensitivity of 93.9%, a specificity of 92.3%, and an accuracy of 93.1% with AUROC of 0.96. Overall, the sparse-DBN classifier improved accuracy by 13.8, 9.5, and 2.5% over ANN, BNN, and DBN classifiers, respectively. PMID:28326009

Automated connectionist-geostatistical classification as an approach to identify sea ice and land ice types, properties and provinces

NASA Astrophysics Data System (ADS)

Goetz-Weiss, L. R.; Herzfeld, U. C.; Trantow, T.; Hunke, E. C.; Maslanik, J. A.; Crocker, R. I.

2016-12-01

An important problem in model-data comparison is the identification of parameters that can be extracted from observational data as well as used in numerical models, which are typically based on idealized physical processes. Here, we present a suite of approaches to characterization and classification of sea ice and land ice types, properties and provinces based on several types of remote-sensing data. Applications will be given to not only illustrate the approach, but employ it in model evaluation and understanding of physical processes. (1) In a geostatistical characterization, spatial sea-ice properties in the Chukchi and Beaufort Sea and in Elsoon Lagoon are derived from analysis of RADARSAT and ERS-2 SAR data. (2) The analysis is taken further by utilizing multi-parameter feature vectors as inputs for unsupervised and supervised statistical classification, which facilitates classification of different sea-ice types. (3) Characteristic sea-ice parameters, as resultant from the classification, can then be applied in model evaluation, as demonstrated for the ridging scheme of the Los Alamos sea ice model, CICE, using high-resolution altimeter and image data collected from unmanned aircraft over Fram Strait during the Characterization of Arctic Sea Ice Experiment (CASIE). The characteristic parameters chosen in this application are directly related to deformation processes, which also underly the ridging scheme. (4) The method that is capable of the most complex classification tasks is the connectionist-geostatistical classification method. This approach has been developed to identify currently up to 18 different crevasse types in order to map progression of the surge through the complex Bering-Bagley Glacier System, Alaska, in 2011-2014. The analysis utilizes airborne altimeter data and video image data and satellite image data. Results of the crevasse classification are compare to fracture modeling and found to match.

CNN universal machine as classificaton platform: an art-like clustering algorithm.

PubMed

Bálya, David

2003-12-01

Fast and robust classification of feature vectors is a crucial task in a number of real-time systems. A cellular neural/nonlinear network universal machine (CNN-UM) can be very efficient as a feature detector. The next step is to post-process the results for object recognition. This paper shows how a robust classification scheme based on adaptive resonance theory (ART) can be mapped to the CNN-UM. Moreover, this mapping is general enough to include different types of feed-forward neural networks. The designed analogic CNN algorithm is capable of classifying the extracted feature vectors keeping the advantages of the ART networks, such as robust, plastic and fault-tolerant behaviors. An analogic algorithm is presented for unsupervised classification with tunable sensitivity and automatic new class creation. The algorithm is extended for supervised classification. The presented binary feature vector classification is implemented on the existing standard CNN-UM chips for fast classification. The experimental evaluation shows promising performance after 100% accuracy on the training set.

Sensor Drift Compensation Algorithm based on PDF Distance Minimization

NASA Astrophysics Data System (ADS)

Kim, Namyong; Byun, Hyung-Gi; Persaud, Krishna C.; Huh, Jeung-Soo

2009-05-01

In this paper, a new unsupervised classification algorithm is introduced for the compensation of sensor drift effects of the odor sensing system using a conducting polymer sensor array. The proposed method continues updating adaptive Radial Basis Function Network (RBFN) weights in the testing phase based on minimizing Euclidian Distance between two Probability Density Functions (PDFs) of a set of training phase output data and another set of testing phase output data. The output in the testing phase using the fixed weights of the RBFN are significantly dispersed and shifted from each target value due mostly to sensor drift effect. In the experimental results, the output data by the proposed methods are observed to be concentrated closer again to their own target values significantly. This indicates that the proposed method can be effectively applied to improved odor sensing system equipped with the capability of sensor drift effect compensation

Computational phenotype discovery using unsupervised feature learning over noisy, sparse, and irregular clinical data.

PubMed

Lasko, Thomas A; Denny, Joshua C; Levy, Mia A

2013-01-01

Inferring precise phenotypic patterns from population-scale clinical data is a core computational task in the development of precision, personalized medicine. The traditional approach uses supervised learning, in which an expert designates which patterns to look for (by specifying the learning task and the class labels), and where to look for them (by specifying the input variables). While appropriate for individual tasks, this approach scales poorly and misses the patterns that we don't think to look for. Unsupervised feature learning overcomes these limitations by identifying patterns (or features) that collectively form a compact and expressive representation of the source data, with no need for expert input or labeled examples. Its rising popularity is driven by new deep learning methods, which have produced high-profile successes on difficult standardized problems of object recognition in images. Here we introduce its use for phenotype discovery in clinical data. This use is challenging because the largest source of clinical data - Electronic Medical Records - typically contains noisy, sparse, and irregularly timed observations, rendering them poor substrates for deep learning methods. Our approach couples dirty clinical data to deep learning architecture via longitudinal probability densities inferred using Gaussian process regression. From episodic, longitudinal sequences of serum uric acid measurements in 4368 individuals we produced continuous phenotypic features that suggest multiple population subtypes, and that accurately distinguished (0.97 AUC) the uric-acid signatures of gout vs. acute leukemia despite not being optimized for the task. The unsupervised features were as accurate as gold-standard features engineered by an expert with complete knowledge of the domain, the classification task, and the class labels. Our findings demonstrate the potential for achieving computational phenotype discovery at population scale. We expect such data-driven phenotypes to expose unknown disease variants and subtypes and to provide rich targets for genetic association studies.

Computational Phenotype Discovery Using Unsupervised Feature Learning over Noisy, Sparse, and Irregular Clinical Data

PubMed Central

Lasko, Thomas A.; Denny, Joshua C.; Levy, Mia A.

2013-01-01

Inferring precise phenotypic patterns from population-scale clinical data is a core computational task in the development of precision, personalized medicine. The traditional approach uses supervised learning, in which an expert designates which patterns to look for (by specifying the learning task and the class labels), and where to look for them (by specifying the input variables). While appropriate for individual tasks, this approach scales poorly and misses the patterns that we don’t think to look for. Unsupervised feature learning overcomes these limitations by identifying patterns (or features) that collectively form a compact and expressive representation of the source data, with no need for expert input or labeled examples. Its rising popularity is driven by new deep learning methods, which have produced high-profile successes on difficult standardized problems of object recognition in images. Here we introduce its use for phenotype discovery in clinical data. This use is challenging because the largest source of clinical data – Electronic Medical Records – typically contains noisy, sparse, and irregularly timed observations, rendering them poor substrates for deep learning methods. Our approach couples dirty clinical data to deep learning architecture via longitudinal probability densities inferred using Gaussian process regression. From episodic, longitudinal sequences of serum uric acid measurements in 4368 individuals we produced continuous phenotypic features that suggest multiple population subtypes, and that accurately distinguished (0.97 AUC) the uric-acid signatures of gout vs. acute leukemia despite not being optimized for the task. The unsupervised features were as accurate as gold-standard features engineered by an expert with complete knowledge of the domain, the classification task, and the class labels. Our findings demonstrate the potential for achieving computational phenotype discovery at population scale. We expect such data-driven phenotypes to expose unknown disease variants and subtypes and to provide rich targets for genetic association studies. PMID:23826094

High-resolution land cover classification using low resolution global data

NASA Astrophysics Data System (ADS)

Carlotto, Mark J.

2013-05-01

A fusion approach is described that combines texture features from high-resolution panchromatic imagery with land cover statistics derived from co-registered low-resolution global databases to obtain high-resolution land cover maps. The method does not require training data or any human intervention. We use an MxN Gabor filter bank consisting of M=16 oriented bandpass filters (0-180°) at N resolutions (3-24 meters/pixel). The size range of these spatial filters is consistent with the typical scale of manmade objects and patterns of cultural activity in imagery. Clustering reduces the complexity of the data by combining pixels that have similar texture into clusters (regions). Texture classification assigns a vector of class likelihoods to each cluster based on its textural properties. Classification is unsupervised and accomplished using a bank of texture anomaly detectors. Class likelihoods are modulated by land cover statistics derived from lower resolution global data over the scene. Preliminary results from a number of Quickbird scenes show our approach is able to classify general land cover features such as roads, built up area, forests, open areas, and bodies of water over a wide range of scenes.

Using deep learning in image hyper spectral segmentation, classification, and detection

NASA Astrophysics Data System (ADS)

Zhao, Xiuying; Su, Zhenyu

2018-02-01

Recent years have shown that deep learning neural networks are a valuable tool in the field of computer vision. Deep learning method can be used in applications like remote sensing such as Land cover Classification, Detection of Vehicle in Satellite Images, Hyper spectral Image classification. This paper addresses the use of the deep learning artificial neural network in Satellite image segmentation. Image segmentation plays an important role in image processing. The hue of the remote sensing image often has a large hue difference, which will result in the poor display of the images in the VR environment. Image segmentation is a pre processing technique applied to the original images and splits the image into many parts which have different hue to unify the color. Several computational models based on supervised, unsupervised, parametric, probabilistic region based image segmentation techniques have been proposed. Recently, one of the machine learning technique known as, deep learning with convolution neural network has been widely used for development of efficient and automatic image segmentation models. In this paper, we focus on study of deep neural convolution network and its variants for automatic image segmentation rather than traditional image segmentation strategies.

A Review of Wetland Remote Sensing.

PubMed

Guo, Meng; Li, Jing; Sheng, Chunlei; Xu, Jiawei; Wu, Li

2017-04-05

Wetlands are some of the most important ecosystems on Earth. They play a key role in alleviating floods and filtering polluted water and also provide habitats for many plants and animals. Wetlands also interact with climate change. Over the past 50 years, wetlands have been polluted and declined dramatically as land cover has changed in some regions. Remote sensing has been the most useful tool to acquire spatial and temporal information about wetlands. In this paper, seven types of sensors were reviewed: aerial photos coarse-resolution, medium-resolution, high-resolution, hyperspectral imagery, radar, and Light Detection and Ranging (LiDAR) data. This study also discusses the advantage of each sensor for wetland research. Wetland research themes reviewed in this paper include wetland classification, habitat or biodiversity, biomass estimation, plant leaf chemistry, water quality, mangrove forest, and sea level rise. This study also gives an overview of the methods used in wetland research such as supervised and unsupervised classification and decision tree and object-based classification. Finally, this paper provides some advice on future wetland remote sensing. To our knowledge, this paper is the most comprehensive and detailed review of wetland remote sensing and it will be a good reference for wetland researchers.

A Review of Wetland Remote Sensing

PubMed Central

Guo, Meng; Li, Jing; Sheng, Chunlei; Xu, Jiawei; Wu, Li

2017-01-01

Wetlands are some of the most important ecosystems on Earth. They play a key role in alleviating floods and filtering polluted water and also provide habitats for many plants and animals. Wetlands also interact with climate change. Over the past 50 years, wetlands have been polluted and declined dramatically as land cover has changed in some regions. Remote sensing has been the most useful tool to acquire spatial and temporal information about wetlands. In this paper, seven types of sensors were reviewed: aerial photos coarse-resolution, medium-resolution, high-resolution, hyperspectral imagery, radar, and Light Detection and Ranging (LiDAR) data. This study also discusses the advantage of each sensor for wetland research. Wetland research themes reviewed in this paper include wetland classification, habitat or biodiversity, biomass estimation, plant leaf chemistry, water quality, mangrove forest, and sea level rise. This study also gives an overview of the methods used in wetland research such as supervised and unsupervised classification and decision tree and object-based classification. Finally, this paper provides some advice on future wetland remote sensing. To our knowledge, this paper is the most comprehensive and detailed review of wetland remote sensing and it will be a good reference for wetland researchers. PMID:28379174

Modeling Image Patches with a Generic Dictionary of Mini-Epitomes

PubMed Central

Papandreou, George; Chen, Liang-Chieh; Yuille, Alan L.

2015-01-01

The goal of this paper is to question the necessity of features like SIFT in categorical visual recognition tasks. As an alternative, we develop a generative model for the raw intensity of image patches and show that it can support image classification performance on par with optimized SIFT-based techniques in a bag-of-visual-words setting. Key ingredient of the proposed model is a compact dictionary of mini-epitomes, learned in an unsupervised fashion on a large collection of images. The use of epitomes allows us to explicitly account for photometric and position variability in image appearance. We show that this flexibility considerably increases the capacity of the dictionary to accurately approximate the appearance of image patches and support recognition tasks. For image classification, we develop histogram-based image encoding methods tailored to the epitomic representation, as well as an “epitomic footprint” encoding which is easy to visualize and highlights the generative nature of our model. We discuss in detail computational aspects and develop efficient algorithms to make the model scalable to large tasks. The proposed techniques are evaluated with experiments on the challenging PASCAL VOC 2007 image classification benchmark. PMID:26321859

Hyperspectral Image Classification using a Self-Organizing Map

NASA Technical Reports Server (NTRS)

Martinez, P.; Gualtieri, J. A.; Aguilar, P. L.; Perez, R. M.; Linaje, M.; Preciado, J. C.; Plaza, A.

2001-01-01

The use of hyperspectral data to determine the abundance of constituents in a certain portion of the Earth's surface relies on the capability of imaging spectrometers to provide a large amount of information at each pixel of a certain scene. Today, hyperspectral imaging sensors are capable of generating unprecedented volumes of radiometric data. The Airborne Visible/Infrared Imaging Spectrometer (AVIRIS), for example, routinely produces image cubes with 224 spectral bands. This undoubtedly opens a wide range of new possibilities, but the analysis of such a massive amount of information is not an easy task. In fact, most of the existing algorithms devoted to analyzing multispectral images are not applicable in the hyperspectral domain, because of the size and high dimensionality of the images. The application of neural networks to perform unsupervised classification of hyperspectral data has been tested by several authors and also by us in some previous work. We have also focused on analyzing the intrinsic capability of neural networks to parallelize the whole hyperspectral unmixing process. The results shown in this work indicate that neural network models are able to find clusters of closely related hyperspectral signatures, and thus can be used as a powerful tool to achieve the desired classification. The present work discusses the possibility of using a Self Organizing neural network to perform unsupervised classification of hyperspectral images. In sections 3 and 4, the topology of the proposed neural network and the training algorithm are respectively described. Section 5 provides the results we have obtained after applying the proposed methodology to real hyperspectral data, described in section 2. Different parameters in the learning stage have been modified in order to obtain a detailed description of their influence on the final results. Finally, in section 6 we provide the conclusions at which we have arrived.

Resolving anthropogenic aerosol pollution types - deconvolution and exploratory classification of pollution events

NASA Astrophysics Data System (ADS)

Äijälä, Mikko; Heikkinen, Liine; Fröhlich, Roman; Canonaco, Francesco; Prévôt, André S. H.; Junninen, Heikki; Petäjä, Tuukka; Kulmala, Markku; Worsnop, Douglas; Ehn, Mikael

2017-03-01

Mass spectrometric measurements commonly yield data on hundreds of variables over thousands of points in time. Refining and synthesizing this raw data into chemical information necessitates the use of advanced, statistics-based data analytical techniques. In the field of analytical aerosol chemistry, statistical, dimensionality reductive methods have become widespread in the last decade, yet comparable advanced chemometric techniques for data classification and identification remain marginal. Here we present an example of combining data dimensionality reduction (factorization) with exploratory classification (clustering), and show that the results cannot only reproduce and corroborate earlier findings, but also complement and broaden our current perspectives on aerosol chemical classification. We find that applying positive matrix factorization to extract spectral characteristics of the organic component of air pollution plumes, together with an unsupervised clustering algorithm, k-means+ + , for classification, reproduces classical organic aerosol speciation schemes. Applying appropriately chosen metrics for spectral dissimilarity along with optimized data weighting, the source-specific pollution characteristics can be statistically resolved even for spectrally very similar aerosol types, such as different combustion-related anthropogenic aerosol species and atmospheric aerosols with similar degree of oxidation. In addition to the typical oxidation level and source-driven aerosol classification, we were also able to classify and characterize outlier groups that would likely be disregarded in a more conventional analysis. Evaluating solution quality for the classification also provides means to assess the performance of mass spectral similarity metrics and optimize weighting for mass spectral variables. This facilitates algorithm-based evaluation of aerosol spectra, which may prove invaluable for future development of automatic methods for spectra identification and classification. Robust, statistics-based results and data visualizations also provide important clues to a human analyst on the existence and chemical interpretation of data structures. Applying these methods to a test set of data, aerosol mass spectrometric data of organic aerosol from a boreal forest site, yielded five to seven different recurring pollution types from various sources, including traffic, cooking, biomass burning and nearby sawmills. Additionally, three distinct, minor pollution types were discovered and identified as amine-dominated aerosols.

Can segmentation evaluation metric be used as an indicator of land cover classification accuracy?

NASA Astrophysics Data System (ADS)

Švab Lenarčič, Andreja; Đurić, Nataša; Čotar, Klemen; Ritlop, Klemen; Oštir, Krištof

2016-10-01

It is a broadly established belief that the segmentation result significantly affects subsequent image classification accuracy. However, the actual correlation between the two has never been evaluated. Such an evaluation would be of considerable importance for any attempts to automate the object-based classification process, as it would reduce the amount of user intervention required to fine-tune the segmentation parameters. We conducted an assessment of segmentation and classification by analyzing 100 different segmentation parameter combinations, 3 classifiers, 5 land cover classes, 20 segmentation evaluation metrics, and 7 classification accuracy measures. The reliability definition of segmentation evaluation metrics as indicators of land cover classification accuracy was based on the linear correlation between the two. All unsupervised metrics that are not based on number of segments have a very strong correlation with all classification measures and are therefore reliable as indicators of land cover classification accuracy. On the other hand, correlation at supervised metrics is dependent on so many factors that it cannot be trusted as a reliable classification quality indicator. Algorithms for land cover classification studied in this paper are widely used; therefore, presented results are applicable to a wider area.

Investigation using data in Alabama from ERTS-A

NASA Technical Reports Server (NTRS)

Henry, H. R. (Principal Investigator)

1972-01-01

There are no author-identified significant results in this report. Brief summaries are presented of accomplishments by the state of Alabama in the areas of: (1) investigation of environmental factors; (2) land use compilation; (3) data processing for land use compilation; (4) photo-reproduction and unsupervised land use classification from digital tape; (5) data collection buoys; and (6) activities of the Geological Survey of Alabama.

DISCRIMINATION OF GRANITOIDS AND MINERALIZED GRANITOIDS IN THE MIDYAN REGION, NORTHWESTERN ARABIAN SHIELD, SAUDI ARABIA, BY LANDSAT MSS DATA-ANALYSIS.

USGS Publications Warehouse

Davis, Philip A.; Grolier, Maurice J.

1984-01-01

Landsat multispectral scanner (MSS) band and band-ratio databases of two scenes covering the Midyan region of northwestern Saudi Arabia were examined quantitatively and qualitatively to determine which databases best discriminate the geologic units of this semi-arid and arid region. Unsupervised, linear-discriminant cluster-analysis was performed on these two band-ratio combinations and on the MSS bands for both scenes. The results for granitoid-rock discrimination indicated that the classification images using the MSS bands are superior to the band-ratio classification images for two reasons, discussed in the paper. Yet, the effects of topography and material type (including desert varnish) on the MSS-band data produced ambiguities in the MSS-band classification results. However, these ambiguities were clarified by using a simulated natural-color image in conjunction with the MSS-band classification image.

Quantitative falls risk estimation through multi-sensor assessment of standing balance.

PubMed

Greene, Barry R; McGrath, Denise; Walsh, Lorcan; Doheny, Emer P; McKeown, David; Garattini, Chiara; Cunningham, Clodagh; Crosby, Lisa; Caulfield, Brian; Kenny, Rose A

2012-12-01

Falls are the most common cause of injury and hospitalization and one of the principal causes of death and disability in older adults worldwide. Measures of postural stability have been associated with the incidence of falls in older adults. The aim of this study was to develop a model that accurately classifies fallers and non-fallers using novel multi-sensor quantitative balance metrics that can be easily deployed into a home or clinic setting. We compared the classification accuracy of our model with an established method for falls risk assessment, the Berg balance scale. Data were acquired using two sensor modalities--a pressure sensitive platform sensor and a body-worn inertial sensor, mounted on the lower back--from 120 community dwelling older adults (65 with a history of falls, 55 without, mean age 73.7 ± 5.8 years, 63 female) while performing a number of standing balance tasks in a geriatric research clinic. Results obtained using a support vector machine yielded a mean classification accuracy of 71.52% (95% CI: 68.82-74.28) in classifying falls history, obtained using one model classifying all data points. Considering male and female participant data separately yielded classification accuracies of 72.80% (95% CI: 68.85-77.17) and 73.33% (95% CI: 69.88-76.81) respectively, leading to a mean classification accuracy of 73.07% in identifying participants with a history of falls. Results compare favourably to those obtained using the Berg balance scale (mean classification accuracy: 59.42% (95% CI: 56.96-61.88)). Results from the present study could lead to a robust method for assessing falls risk in both supervised and unsupervised environments.

Analysis and classification of normal and pathological skin tissue spectra using neural networks

NASA Astrophysics Data System (ADS)

Bruch, Reinhard F.; Afanasyeva, Natalia I.; Gummuluri, Satyashree

2000-07-01

An innovative spectroscopic diagnostic method has been developed for investigation of different regions of normal human skin tissue, as well as cancerous and precancerous conditions in vivo, ex vivo and in vitro. This new method is a combination of fiber-optical evanescent wave Fourier Transform infrared (FEW-FTIR) spectroscopy and fiber optic techniques using low-loss, highly flexible and nontoxic fiber optical sensors. The FEW-FTIR technique is nondestructive and very sensitive to changes of vibrational spectra in the IR region without heating and staining and thus altering the skin tissue. A special software package was developed for the treatment of the spectra. This package includes a database, programs for data preparation and presentation, and neural networks for classification of disease states. An unsupervised neural competitive learning neural network is implemented for skin cancer diagnosis. In this study, we have investigated and classified skin tissue in the range of 1400 to 1800 cm-1 using these programs. The results of our surface analysis of skin tissue are discussed in terms of molecular structural similarities and differences as well as in terms of different skin states represented by eleven different skin spectra classes.

Monitoring wetlands change using LANDSAT data

NASA Technical Reports Server (NTRS)

Hardin, D. L.

1981-01-01

A wetlands monitoring study was initiated as part of Delaware's LANDSAT applications demonstration project. Classifications of digital data are conducted in an effort to determine the location and acreage of wetlands loss or gain, species conversion, and application for the inventory and typing of freshwater wetlands. A multi-seasonal approach is employed to compare data from two different years. Unsupervised classifications were conducted for two of the four dates examined. Initial results indicate the multi-seasonal approach allows much better separation of wetland types for both tidal and non-tidal wetlands than either season alone. Change detection is possible but generally misses the small acreages now impacted by man.

myBlackBox: Blackbox Mobile Cloud Systems for Personalized Unusual Event Detection.

PubMed

Ahn, Junho; Han, Richard

2016-05-23

We demonstrate the feasibility of constructing a novel and practical real-world mobile cloud system, called myBlackBox, that efficiently fuses multimodal smartphone sensor data to identify and log unusual personal events in mobile users' daily lives. The system incorporates a hybrid architectural design that combines unsupervised classification of audio, accelerometer and location data with supervised joint fusion classification to achieve high accuracy, customization, convenience and scalability. We show the feasibility of myBlackBox by implementing and evaluating this end-to-end system that combines Android smartphones with cloud servers, deployed for 15 users over a one-month period.

myBlackBox: Blackbox Mobile Cloud Systems for Personalized Unusual Event Detection

PubMed Central

Ahn, Junho; Han, Richard

2016-01-01

We demonstrate the feasibility of constructing a novel and practical real-world mobile cloud system, called myBlackBox, that efficiently fuses multimodal smartphone sensor data to identify and log unusual personal events in mobile users’ daily lives. The system incorporates a hybrid architectural design that combines unsupervised classification of audio, accelerometer and location data with supervised joint fusion classification to achieve high accuracy, customization, convenience and scalability. We show the feasibility of myBlackBox by implementing and evaluating this end-to-end system that combines Android smartphones with cloud servers, deployed for 15 users over a one-month period. PMID:27223292

Analysis of the Tanana River Basin using LANDSAT data

NASA Technical Reports Server (NTRS)

Morrissey, L. A.; Ambrosia, V. G.; Carson-Henry, C.

1981-01-01

Digital image classification techniques were used to classify land cover/resource information in the Tanana River Basin of Alaska. Portions of four scenes of LANDSAT digital data were analyzed using computer systems at Ames Research Center in an unsupervised approach to derive cluster statistics. The spectral classes were identified using the IDIMS display and color infrared photography. Classification errors were corrected using stratification procedures. The classification scheme resulted in the following eleven categories; sedimented/shallow water, clear/deep water, coniferous forest, mixed forest, deciduous forest, shrub and grass, bog, alpine tundra, barrens, snow and ice, and cultural features. Color coded maps and acreage summaries of the major land cover categories were generated for selected USGS quadrangles (1:250,000) which lie within the drainage basin. The project was completed within six months.

Preliminary results of the comparative study between EO-1/Hyperion and ALOS/PALSAR

NASA Astrophysics Data System (ADS)

Koizumi, E.; Furuta, R.; Yamamoto, A.

2011-12-01

[Introduction]Hyper-spectral remote sensing images have been used for land-cover classification due to their high spectral resolutions. Synthetic Aperture Radar (SAR) remote sensing data are also useful to probe surface condition because radar image reflects surface geometry, although there are not so many reports about the land-cover detection with combination use of both hyper-spectral data and SAR data. Among SAR sensors, L-band SAR is thought to be useful tool to find physical properties because its comparatively long wave length can through small objects on surface. We are comparing the result of land cover classification and/or physical values from hyper-spectral and L-band SAR data to find the relationship between these two quite different sensors and to confirm the possibility of the combined analysis of hyper-spectral and L-band SAR data, and in this presentation we will report the preliminary result of this study. There are only few sources of both hyper-spectral and L-band SAR data from the space in this time, however, several space organizations plan to launch new satellites on which hyper-spectral or L-band SAR equipments are mounted in next few years. So, the importance of the combined analysis will increase more than ever. [Target Area]We are performing and planning analyses on the following areas in this study. (a)South of Cairo, Nile river area, Egypt, for sand, sandstone, limestone, river, crops. (b)Mount Sakurajima, Japan, for igneous rock and other related geological property. [Methods and Results]EO-1 Hyperion data are analyzed in this study as hyper-spectral data. The Hyperion equipment has 242 channels but some of them include full noise or have no data. We selected channels for analysis by checking each channel, and select about 150 channels (depend on the area). Before analysis, the atmospheric correction of ATCOR-3 was applied for the selected channels. The corrected data were analyzed by unsupervised classification or principal component analysis (PCA). We also did the unsupervised classification with the several components from PCA. According to the analysis results, several classifications can be extracted for each category (vegetation, sand and rocks, and water). One of the interesting results is that there are a few classes for sand as those of other categories, and these classes seem to reflect artificial and natural surface changes that are some result of excavation or scratching. ALOS PALSAR data are analyzed as L-band SAR data. We selected the Dual Polarization data for each target area. The data were converted to backscattered images, and then calculated some image statistic values. The topographic information also calculates with SAR interferometry technique as reference. Comparing the Hyperion classification results with the result of the calculation of statistic values from PALSAR, there are some areas where relativities seem to be confirmed. To confirm the combined analysis between hyper-spectral and L-band SAR data to detect and classify the surface material, further studies are still required. We will continue to investigate more efficient analytic methods and to examine other functions like the adopted channels, the number of class in classification, the kind of statistic information, and so on, to refine the method.

Unsupervised frequency-recognition method of SSVEPs using a filter bank implementation of binary subband CCA.

PubMed

Rabiul Islam, Md; Khademul Islam Molla, Md; Nakanishi, Masaki; Tanaka, Toshihisa

2017-04-01

Recently developed effective methods for detection commands of steady-state visual evoked potential (SSVEP)-based brain-computer interface (BCI) that need calibration for visual stimuli, which cause more time and fatigue prior to the use, as the number of commands increases. This paper develops a novel unsupervised method based on canonical correlation analysis (CCA) for accurate detection of stimulus frequency. A novel unsupervised technique termed as binary subband CCA (BsCCA) is implemented in a multiband approach to enhance the frequency recognition performance of SSVEP. In BsCCA, two subbands are used and a CCA-based correlation coefficient is computed for the individual subbands. In addition, a reduced set of artificial reference signals is used to calculate CCA for the second subband. The analyzing SSVEP is decomposed into multiple subband and the BsCCA is implemented for each one. Then, the overall recognition score is determined by a weighted sum of the canonical correlation coefficients obtained from each band. A 12-class SSVEP dataset (frequency range: 9.25-14.75 Hz with an interval of 0.5 Hz) for ten healthy subjects are used to evaluate the performance of the proposed method. The results suggest that BsCCA significantly improves the performance of SSVEP-based BCI compared to the state-of-the-art methods. The proposed method is an unsupervised approach with averaged information transfer rate (ITR) of 77.04 bits min -1 across 10 subjects. The maximum individual ITR is 107.55 bits min -1 for 12-class SSVEP dataset, whereas, the ITR of 69.29 and 69.44 bits min -1 are achieved with CCA and NCCA respectively. The statistical test shows that the proposed unsupervised method significantly improves the performance of the SSVEP-based BCI. It can be usable in real world applications.

CrossLink: a novel method for cross-condition classification of cancer subtypes.

PubMed

Ma, Chifeng; Sastry, Konduru S; Flore, Mario; Gehani, Salah; Al-Bozom, Issam; Feng, Yusheng; Serpedin, Erchin; Chouchane, Lotfi; Chen, Yidong; Huang, Yufei

2016-08-22

We considered the prediction of cancer classes (e.g. subtypes) using patient gene expression profiles that contain both systematic and condition-specific biases when compared with the training reference dataset. The conventional normalization-based approaches cannot guarantee that the gene signatures in the reference and prediction datasets always have the same distribution for all different conditions as the class-specific gene signatures change with the condition. Therefore, the trained classifier would work well under one condition but not under another. To address the problem of current normalization approaches, we propose a novel algorithm called CrossLink (CL). CL recognizes that there is no universal, condition-independent normalization mapping of signatures. In contrast, it exploits the fact that the signature is unique to its associated class under any condition and thus employs an unsupervised clustering algorithm to discover this unique signature. We assessed the performance of CL for cross-condition predictions of PAM50 subtypes of breast cancer by using a simulated dataset modeled after TCGA BRCA tumor samples with a cross-validation scheme, and datasets with known and unknown PAM50 classification. CL achieved prediction accuracy >73 %, highest among other methods we evaluated. We also applied the algorithm to a set of breast cancer tumors derived from Arabic population to assign a PAM50 classification to each tumor based on their gene expression profiles. A novel algorithm CrossLink for cross-condition prediction of cancer classes was proposed. In all test datasets, CL showed robust and consistent improvement in prediction performance over other state-of-the-art normalization and classification algorithms.

Classification and source determination of medium petroleum distillates by chemometric and artificial neural networks: a self organizing feature approach.

PubMed

Mat-Desa, Wan N S; Ismail, Dzulkiflee; NicDaeid, Niamh

2011-10-15

Three different medium petroleum distillate (MPD) products (white spirit, paint brush cleaner, and lamp oil) were purchased from commercial stores in Glasgow, Scotland. Samples of 10, 25, 50, 75, 90, and 95% evaporated product were prepared, resulting in 56 samples in total which were analyzed using gas chromatography-mass spectrometry. Data sets from the chromatographic patterns were examined and preprocessed for unsupervised multivariate analyses using principal component analysis (PCA), hierarchical cluster analysis (HCA), and a self organizing feature map (SOFM) artificial neural network. It was revealed that data sets comprised of higher boiling point hydrocarbon compounds provided a good means for the classification of the samples and successfully linked highly weathered samples back to their unevaporated counterpart in every case. The classification abilities of SOFM were further tested and validated for their predictive abilities where one set of weather data in each case was withdrawn from the sample set and used as a test set of the retrained network. This revealed SOFM to be an outstanding mechanism for sample discrimination and linkage over the more conventional PCA and HCA methods often suggested for such data analysis. SOFM also has the advantage of providing additional information through the evaluation of component planes facilitating the investigation of underlying variables that account for the classification. © 2011 American Chemical Society

Detection of land-use and land cover changes in Franklin, Gulf, and Liberty Counties, Florida, with multitemporal landsat thematic mapper images

Treesearch

Shufen Pan; Guiying Li

2007-01-01

Florida Panhandle region has been experiencing rapid land transformation in the recent decades. To quantify land use and land-cover (LULC) changes and other landscape changes in this area, three counties including Franklin, Liberty and Gulf were taken as a case study and an unsupervised classification approach implemented to Landsat TM images acquired from 1985 to 2005...

Information-Based Approach to Unsupervised Machine Learning

DTIC Science & Technology

2013-06-19

Leibler , R. A. (1951). On information and sufficiency. Annals of Mathematical Statistics, 22, 79–86. Minka, T. P. (2000). Old and new matrix algebra use ...and Arabie, P. Comparing partitions. Journal of Classification, 2(1):193–218, 1985. Kullback , S. and Leibler , R. A. On information and suf- ficiency...the test input density to a lin- ear combination of class-wise input distributions under the Kullback - Leibler (KL) divergence ( Kullback

Genome-Wide Association Mapping for Intelligence in Military Working Dogs: Canine Cohort, Canine Intelligence Assessment Regimen, Genome-Wide Single Nucleotide Polymorphism (SNP) Typing, and Unsupervised Classification Algorithm for Genome-Wide Association Data Analysis

DTIC Science & Technology

2011-09-01

Almasy, L, Blangero, J. (2009) Human QTL linkage mapping. Genetica 136:333-340. Amos, CI. (2007) Successful design and conduct of genome-wide...quantitative trait loci. Genetica 136:237-243. Skol AD, Scott LJ, Abecasis GR, Boehnke M. (2006) Joint analysis is more efficient than replication

Diagnostic index of three-dimensional osteoarthritic changes in temporomandibular joint condylar morphology

PubMed Central

Gomes, Liliane R.; Gomes, Marcelo; Jung, Bryan; Paniagua, Beatriz; Ruellas, Antonio C.; Gonçalves, João Roberto; Styner, Martin A.; Wolford, Larry; Cevidanes, Lucia

2015-01-01

Abstract. This study aimed to investigate imaging statistical approaches for classifying three-dimensional (3-D) osteoarthritic morphological variations among 169 temporomandibular joint (TMJ) condyles. Cone-beam computed tomography scans were acquired from 69 subjects with long-term TMJ osteoarthritis (OA), 15 subjects at initial diagnosis of OA, and 7 healthy controls. Three-dimensional surface models of the condyles were constructed and SPHARM-PDM established correspondent points on each model. Multivariate analysis of covariance and direction-projection-permutation (DiProPerm) were used for testing statistical significance of the differences between the groups determined by clinical and radiographic diagnoses. Unsupervised classification using hierarchical agglomerative clustering was then conducted. Compared with healthy controls, OA average condyle was significantly smaller in all dimensions except its anterior surface. Significant flattening of the lateral pole was noticed at initial diagnosis. We observed areas of 3.88-mm bone resorption at the superior surface and 3.10-mm bone apposition at the anterior aspect of the long-term OA average model. DiProPerm supported a significant difference between the healthy control and OA group (p-value=0.001). Clinically meaningful unsupervised classification of TMJ condylar morphology determined a preliminary diagnostic index of 3-D osteoarthritic changes, which may be the first step towards a more targeted diagnosis of this condition. PMID:26158119

Mapping Neglected Swimming Pools from Satellite Data for Urban Vector Control

NASA Astrophysics Data System (ADS)

Barker, C. M.; Melton, F. S.; Reisen, W. K.

2010-12-01

Neglected swimming pools provide suitable breeding habit for mosquitoes, can contain thousands of mosquito larvae, and present both a significant nuisance and public health risk due to their inherent proximity to urban and suburban populations. The rapid increase and sustained rate of foreclosures in California associated with the recent recession presents a challenge for vector control districts seeking to identify, treat, and monitor neglected pools. Commercial high resolution satellite imagery offers some promise for mapping potential neglected pools, and for mapping pools for which routine maintenance has been reestablished. We present progress on unsupervised classification techniques for mapping both neglected pools and clean pools using high resolution commercial satellite data and discuss the potential uses and limitations of this data source in support of vector control efforts. An unsupervised classification scheme that utilizes image segmentation, band thresholds, and a change detection approach was implemented for sample regions in Coachella Valley, CA and the greater Los Angeles area. Comparison with field data collected by vector control personal was used to assess the accuracy of the estimates. The results suggest that the current system may provide some utility for early detection, or cost effective and time efficient annual monitoring, but additional work is required to address spectral and spatial limitations of current commercial satellite sensors for this purpose.

Tree leaves extraction in natural images: comparative study of preprocessing tools and segmentation methods.

PubMed

Grand-Brochier, Manuel; Vacavant, Antoine; Cerutti, Guillaume; Kurtz, Camille; Weber, Jonathan; Tougne, Laure

2015-05-01

In this paper, we propose a comparative study of various segmentation methods applied to the extraction of tree leaves from natural images. This study follows the design of a mobile application, developed by Cerutti et al. (published in ReVeS Participation--Tree Species Classification Using Random Forests and Botanical Features. CLEF 2012), to highlight the impact of the choices made for segmentation aspects. All the tests are based on a database of 232 images of tree leaves depicted on natural background from smartphones acquisitions. We also propose to study the improvements, in terms of performance, using preprocessing tools, such as the interaction between the user and the application through an input stroke, as well as the use of color distance maps. The results presented in this paper shows that the method developed by Cerutti et al. (denoted Guided Active Contour), obtains the best score for almost all observation criteria. Finally, we detail our online benchmark composed of 14 unsupervised methods and 6 supervised ones.

An unsupervised classification scheme for improving predictions of prokaryotic TIS.

PubMed

Tech, Maike; Meinicke, Peter

2006-03-09

Although it is not difficult for state-of-the-art gene finders to identify coding regions in prokaryotic genomes, exact prediction of the corresponding translation initiation sites (TIS) is still a challenging problem. Recently a number of post-processing tools have been proposed for improving the annotation of prokaryotic TIS. However, inherent difficulties of these approaches arise from the considerable variation of TIS characteristics across different species. Therefore prior assumptions about the properties of prokaryotic gene starts may cause suboptimal predictions for newly sequenced genomes with TIS signals differing from those of well-investigated genomes. We introduce a clustering algorithm for completely unsupervised scoring of potential TIS, based on positionally smoothed probability matrices. The algorithm requires an initial gene prediction and the genomic sequence of the organism to perform the reannotation. As compared with other methods for improving predictions of gene starts in bacterial genomes, our approach is not based on any specific assumptions about prokaryotic TIS. Despite the generality of the underlying algorithm, the prediction rate of our method is competitive on experimentally verified test data from E. coli and B. subtilis. Regarding genomes with high G+C content, in contrast to some previously proposed methods, our algorithm also provides good performance on P. aeruginosa, B. pseudomallei and R. solanacearum. On reliable test data we showed that our method provides good results in post-processing the predictions of the widely-used program GLIMMER. The underlying clustering algorithm is robust with respect to variations in the initial TIS annotation and does not require specific assumptions about prokaryotic gene starts. These features are particularly useful on genomes with high G+C content. The algorithm has been implemented in the tool "TICO" (TIs COrrector) which is publicly available from our web site.

Fast dimension reduction and integrative clustering of multi-omics data using low-rank approximation: application to cancer molecular classification.

PubMed

Wu, Dingming; Wang, Dongfang; Zhang, Michael Q; Gu, Jin

2015-12-01

One major goal of large-scale cancer omics study is to identify molecular subtypes for more accurate cancer diagnoses and treatments. To deal with high-dimensional cancer multi-omics data, a promising strategy is to find an effective low-dimensional subspace of the original data and then cluster cancer samples in the reduced subspace. However, due to data-type diversity and big data volume, few methods can integrative and efficiently find the principal low-dimensional manifold of the high-dimensional cancer multi-omics data. In this study, we proposed a novel low-rank approximation based integrative probabilistic model to fast find the shared principal subspace across multiple data types: the convexity of the low-rank regularized likelihood function of the probabilistic model ensures efficient and stable model fitting. Candidate molecular subtypes can be identified by unsupervised clustering hundreds of cancer samples in the reduced low-dimensional subspace. On testing datasets, our method LRAcluster (low-rank approximation based multi-omics data clustering) runs much faster with better clustering performances than the existing method. Then, we applied LRAcluster on large-scale cancer multi-omics data from TCGA. The pan-cancer analysis results show that the cancers of different tissue origins are generally grouped as independent clusters, except squamous-like carcinomas. While the single cancer type analysis suggests that the omics data have different subtyping abilities for different cancer types. LRAcluster is a very useful method for fast dimension reduction and unsupervised clustering of large-scale multi-omics data. LRAcluster is implemented in R and freely available via http://bioinfo.au.tsinghua.edu.cn/software/lracluster/ .

Unsupervised automated high throughput phenotyping of RNAi time-lapse movies.

PubMed

Failmezger, Henrik; Fröhlich, Holger; Tresch, Achim

2013-10-04

Gene perturbation experiments in combination with fluorescence time-lapse cell imaging are a powerful tool in reverse genetics. High content applications require tools for the automated processing of the large amounts of data. These tools include in general several image processing steps, the extraction of morphological descriptors, and the grouping of cells into phenotype classes according to their descriptors. This phenotyping can be applied in a supervised or an unsupervised manner. Unsupervised methods are suitable for the discovery of formerly unknown phenotypes, which are expected to occur in high-throughput RNAi time-lapse screens. We developed an unsupervised phenotyping approach based on Hidden Markov Models (HMMs) with multivariate Gaussian emissions for the detection of knockdown-specific phenotypes in RNAi time-lapse movies. The automated detection of abnormal cell morphologies allows us to assign a phenotypic fingerprint to each gene knockdown. By applying our method to the Mitocheck database, we show that a phenotypic fingerprint is indicative of a gene's function. Our fully unsupervised HMM-based phenotyping is able to automatically identify cell morphologies that are specific for a certain knockdown. Beyond the identification of genes whose knockdown affects cell morphology, phenotypic fingerprints can be used to find modules of functionally related genes.

Object-oriented feature-tracking algorithms for SAR images of the marginal ice zone

NASA Technical Reports Server (NTRS)

Daida, Jason; Samadani, Ramin; Vesecky, John F.

1990-01-01

An unsupervised method that chooses and applies the most appropriate tracking algorithm from among different sea-ice tracking algorithms is reported. In contrast to current unsupervised methods, this method chooses and applies an algorithm by partially examining a sequential image pair to draw inferences about what was examined. Based on these inferences the reported method subsequently chooses which algorithm to apply to specific areas of the image pair where that algorithm should work best.

An assessment of the effectiveness of a random forest classifier for land-cover classification

NASA Astrophysics Data System (ADS)

Rodriguez-Galiano, V. F.; Ghimire, B.; Rogan, J.; Chica-Olmo, M.; Rigol-Sanchez, J. P.

2012-01-01

Land cover monitoring using remotely sensed data requires robust classification methods which allow for the accurate mapping of complex land cover and land use categories. Random forest (RF) is a powerful machine learning classifier that is relatively unknown in land remote sensing and has not been evaluated thoroughly by the remote sensing community compared to more conventional pattern recognition techniques. Key advantages of RF include: their non-parametric nature; high classification accuracy; and capability to determine variable importance. However, the split rules for classification are unknown, therefore RF can be considered to be black box type classifier. RF provides an algorithm for estimating missing values; and flexibility to perform several types of data analysis, including regression, classification, survival analysis, and unsupervised learning. In this paper, the performance of the RF classifier for land cover classification of a complex area is explored. Evaluation was based on several criteria: mapping accuracy, sensitivity to data set size and noise. Landsat-5 Thematic Mapper data captured in European spring and summer were used with auxiliary variables derived from a digital terrain model to classify 14 different land categories in the south of Spain. Results show that the RF algorithm yields accurate land cover classifications, with 92% overall accuracy and a Kappa index of 0.92. RF is robust to training data reduction and noise because significant differences in kappa values were only observed for data reduction and noise addition values greater than 50 and 20%, respectively. Additionally, variables that RF identified as most important for classifying land cover coincided with expectations. A McNemar test indicates an overall better performance of the random forest model over a single decision tree at the 0.00001 significance level.

Characterizing Interference in Radio Astronomy Observations through Active and Unsupervised Learning

NASA Technical Reports Server (NTRS)

Doran, G.

2013-01-01

In the process of observing signals from astronomical sources, radio astronomers must mitigate the effects of manmade radio sources such as cell phones, satellites, aircraft, and observatory equipment. Radio frequency interference (RFI) often occurs as short bursts (< 1 ms) across a broad range of frequencies, and can be confused with signals from sources of interest such as pulsars. With ever-increasing volumes of data being produced by observatories, automated strategies are required to detect, classify, and characterize these short "transient" RFI events. We investigate an active learning approach in which an astronomer labels events that are most confusing to a classifier, minimizing the human effort required for classification. We also explore the use of unsupervised clustering techniques, which automatically group events into classes without user input. We apply these techniques to data from the Parkes Multibeam Pulsar Survey to characterize several million detected RFI events from over a thousand hours of observation.

CHISSL: A Human-Machine Collaboration Space for Unsupervised Learning

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arendt, Dustin L.; Komurlu, Caner; Blaha, Leslie M.

We developed CHISSL, a human-machine interface that utilizes supervised machine learning in an unsupervised context to help the user group unlabeled instances by her own mental model. The user primarily interacts via correction (moving a misplaced instance into its correct group) or confirmation (accepting that an instance is placed in its correct group). Concurrent with the user's interactions, CHISSL trains a classification model guided by the user's grouping of the data. It then predicts the group of unlabeled instances and arranges some of these alongside the instances manually organized by the user. We hypothesize that this mode of human andmore » machine collaboration is more effective than Active Learning, wherein the machine decides for itself which instances should be labeled by the user. We found supporting evidence for this hypothesis in a pilot study where we applied CHISSL to organize a collection of handwritten digits.« less

Unsupervised segmentation with dynamical units.

PubMed

Rao, A Ravishankar; Cecchi, Guillermo A; Peck, Charles C; Kozloski, James R

2008-01-01

In this paper, we present a novel network to separate mixtures of inputs that have been previously learned. A significant capability of the network is that it segments the components of each input object that most contribute to its classification. The network consists of amplitude-phase units that can synchronize their dynamics, so that separation is determined by the amplitude of units in an output layer, and segmentation by phase similarity between input and output layer units. Learning is unsupervised and based on a Hebbian update, and the architecture is very simple. Moreover, efficient segmentation can be achieved even when there is considerable superposition of the inputs. The network dynamics are derived from an objective function that rewards sparse coding in the generalized amplitude-phase variables. We argue that this objective function can provide a possible formal interpretation of the binding problem and that the implementation of the network architecture and dynamics is biologically plausible.

Early breast tumor and late SARS detections using space-variant multispectral infrared imaging at a single pixel

NASA Astrophysics Data System (ADS)

Szu, Harold H.; Buss, James R.; Kopriva, Ivica

2004-04-01

We proposed the physics approach to solve a physical inverse problem, namely to choose the unique equilibrium solution (at the minimum free energy: H= E - ToS, including the Wiener, l.m.s E, and ICA, Max S, as special cases). The "unsupervised classification" presumes that required information must be learned and derived directly and solely from the data alone, in consistence with the classical Duda-Hart ATR definition of the "unlabelled data". Such truly unsupervised methodology is presented for space-variant imaging processing for a single pixel in the real world case of remote sensing, early tumor detections and SARS. The indeterminacy of the multiple solutions of the inverse problem is regulated or selected by means of the absolute minimum of isothermal free energy as the ground truth of local equilibrium condition at the single-pixel foot print.

Spectral analysis of white ash response to emerald ash borer infestations

NASA Astrophysics Data System (ADS)

Calandra, Laura

The emerald ash borer (EAB) (Agrilus planipennis Fairmaire) is an invasive insect that has killed over 50 million ash trees in the US. The goal of this research was to establish a method to identify ash trees infested with EAB using remote sensing techniques at the leaf-level and tree crown level. First, a field-based study at the leaf-level used the range of spectral bands from the WorldView-2 sensor to determine if there was a significant difference between EAB-infested white ash (Fraxinus americana) and healthy leaves. Binary logistic regression models were developed using individual and combinations of wavelengths; the most successful model included 545 and 950 nm bands. The second half of this research employed imagery to identify healthy and EAB-infested trees, comparing pixel- and object-based methods by applying an unsupervised classification approach and a tree crown delineation algorithm, respectively. The pixel-based models attained the highest overall accuracies.

Unsupervised categorization method of graphemes on handwritten manuscripts: application to style recognition

NASA Astrophysics Data System (ADS)

Daher, H.; Gaceb, D.; Eglin, V.; Bres, S.; Vincent, N.

2012-01-01

We present in this paper a feature selection and weighting method for medieval handwriting images that relies on codebooks of shapes of small strokes of characters (graphemes that are issued from the decomposition of manuscripts). These codebooks are important to simplify the automation of the analysis, the manuscripts transcription and the recognition of styles or writers. Our approach provides a precise features weighting by genetic algorithms and a highperformance methodology for the categorization of the shapes of graphemes by using graph coloring into codebooks which are applied in turn on CBIR (Content Based Image Retrieval) in a mixed handwriting database containing different pages from different writers, periods of the history and quality. We show how the coupling of these two mechanisms 'features weighting - graphemes classification' can offer a better separation of the forms to be categorized by exploiting their grapho-morphological, their density and their significant orientations particularities.

Space-Based Identification of Archaeological Illegal Excavations and a New Automatic Method for Looting Feature Extraction in Desert Areas

NASA Astrophysics Data System (ADS)

Lasaponara, Rosa; Masini, Nicola

2018-06-01

The identification and quantification of disturbance of archaeological sites has been generally approached by visual inspection of optical aerial or satellite pictures. In this paper, we briefly summarize the state of the art of the traditionally satellite-based approaches for looting identification and propose a new automatic method for archaeological looting feature extraction approach (ALFEA). It is based on three steps: the enhancement using spatial autocorrelation, unsupervised classification, and segmentation. ALFEA has been applied to Google Earth images of two test areas, selected in desert environs in Syria (Dura Europos), and in Peru (Cahuachi-Nasca). The reliability of ALFEA was assessed through field surveys in Peru and visual inspection for the Syrian case study. Results from the evaluation procedure showed satisfactory performance from both of the two analysed test cases with a rate of success higher than 90%.

Supervised and Unsupervised Aspect Category Detection for Sentiment Analysis with Co-occurrence Data.

PubMed

Schouten, Kim; van der Weijde, Onne; Frasincar, Flavius; Dekker, Rommert

2018-04-01

Using online consumer reviews as electronic word of mouth to assist purchase-decision making has become increasingly popular. The Web provides an extensive source of consumer reviews, but one can hardly read all reviews to obtain a fair evaluation of a product or service. A text processing framework that can summarize reviews, would therefore be desirable. A subtask to be performed by such a framework would be to find the general aspect categories addressed in review sentences, for which this paper presents two methods. In contrast to most existing approaches, the first method presented is an unsupervised method that applies association rule mining on co-occurrence frequency data obtained from a corpus to find these aspect categories. While not on par with state-of-the-art supervised methods, the proposed unsupervised method performs better than several simple baselines, a similar but supervised method, and a supervised baseline, with an -score of 67%. The second method is a supervised variant that outperforms existing methods with an -score of 84%.

The Danish Fracture Database can monitor quality of fracture-related surgery, surgeons' experience level and extent of supervision.

PubMed

Andersen, Morten Jon; Gromov, Kiril; Brix, Michael; Troelsen, Anders

2014-06-01

The importance of supervision and of surgeons' level of experience in relation to patient outcome have been demonstrated in both hip fracture and arthroplasty surgery. The aim of this study was to describe the surgeons' experience level and the extent of supervision for: 1) fracture-related surgery in general; 2) the three most frequent primary operations and reoperations; and 3) primary operations during and outside regular working hours. A total of 9,767 surgical procedures were identified from the Danish Fracture Database (DFDB). Procedures were grouped based on the surgeons' level of experience, extent of supervision, type (primary, planned secondary or reoperation), classification (AO Müller), and whether they were performed during or outside regular hours. Interns and junior residents combined performed 46% of all procedures. A total of 90% of surgeries by interns were performed under supervision, whereas 32% of operations by junior residents were unsupervised. Supervision was absent in 14-16% and 22-33% of the three most frequent primary procedures and reoperations when performed by interns and junior residents, respectively. The proportion of unsupervised procedures by junior residents grew from 30% during to 40% (p < 0.001) outside regular hours. Interns and junior residents together performed almost half of all fracture-related surgery. The extent of supervision was generally high; however, a third of the primary procedures performed by junior residents were unsupervised. The extent of unsupervised surgery performed by junior residents was significantly higher outside regular hours. not relevant. The Danish Fracture Database ("Dansk Frakturdatabase") was approved by the Danish Data Protection Agency ID: 01321.

Identification of chronic rhinosinusitis phenotypes using cluster analysis.

PubMed

Soler, Zachary M; Hyer, J Madison; Ramakrishnan, Viswanathan; Smith, Timothy L; Mace, Jess; Rudmik, Luke; Schlosser, Rodney J

2015-05-01

Current clinical classifications of chronic rhinosinusitis (CRS) have been largely defined based upon preconceived notions of factors thought to be important, such as polyp or eosinophil status. Unfortunately, these classification systems have little correlation with symptom severity or treatment outcomes. Unsupervised clustering can be used to identify phenotypic subgroups of CRS patients, describe clinical differences in these clusters and define simple algorithms for classification. A multi-institutional, prospective study of 382 patients with CRS who had failed initial medical therapy completed the Sino-Nasal Outcome Test (SNOT-22), Rhinosinusitis Disability Index (RSDI), Medical Outcomes Study Short Form-12 (SF-12), Pittsburgh Sleep Quality Index (PSQI), and Patient Health Questionnaire (PHQ-2). Objective measures of CRS severity included Brief Smell Identification Test (B-SIT), CT, and endoscopy scoring. All variables were reduced and unsupervised hierarchical clustering was performed. After clusters were defined, variations in medication usage were analyzed. Discriminant analysis was performed to develop a simplified, clinically useful algorithm for clustering. Clustering was largely determined by age, severity of patient reported outcome measures, depression, and fibromyalgia. CT and endoscopy varied somewhat among clusters. Traditional clinical measures, including polyp/atopic status, prior surgery, B-SIT and asthma, did not vary among clusters. A simplified algorithm based upon productivity loss, SNOT-22 score, and age predicted clustering with 89% accuracy. Medication usage among clusters did vary significantly. A simplified algorithm based upon hierarchical clustering is able to classify CRS patients and predict medication usage. Further studies are warranted to determine if such clustering predicts treatment outcomes. © 2015 ARS-AAOA, LLC.

LICRE: unsupervised feature correlation reduction for lipidomics.

PubMed

Wong, Gerard; Chan, Jeffrey; Kingwell, Bronwyn A; Leckie, Christopher; Meikle, Peter J

2014-10-01

Recent advances in high-throughput lipid profiling by liquid chromatography electrospray ionization tandem mass spectrometry (LC-ESI-MS/MS) have made it possible to quantify hundreds of individual molecular lipid species (e.g. fatty acyls, glycerolipids, glycerophospholipids, sphingolipids) in a single experimental run for hundreds of samples. This enables the lipidome of large cohorts of subjects to be profiled to identify lipid biomarkers significantly associated with disease risk, progression and treatment response. Clinically, these lipid biomarkers can be used to construct classification models for the purpose of disease screening or diagnosis. However, the inclusion of a large number of highly correlated biomarkers within a model may reduce classification performance, unnecessarily inflate associated costs of a diagnosis or a screen and reduce the feasibility of clinical translation. An unsupervised feature reduction approach can reduce feature redundancy in lipidomic biomarkers by limiting the number of highly correlated lipids while retaining informative features to achieve good classification performance for various clinical outcomes. Good predictive models based on a reduced number of biomarkers are also more cost effective and feasible from a clinical translation perspective. The application of LICRE to various lipidomic datasets in diabetes and cardiovascular disease demonstrated superior discrimination in terms of the area under the receiver operator characteristic curve while using fewer lipid markers when predicting various clinical outcomes. The MATLAB implementation of LICRE is available from http://ww2.cs.mu.oz.au/∼gwong/LICRE © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Unsupervised detection and removal of muscle artifacts from scalp EEG recordings using canonical correlation analysis, wavelets and random forests.

PubMed

Anastasiadou, Maria N; Christodoulakis, Manolis; Papathanasiou, Eleftherios S; Papacostas, Savvas S; Mitsis, Georgios D

2017-09-01

This paper proposes supervised and unsupervised algorithms for automatic muscle artifact detection and removal from long-term EEG recordings, which combine canonical correlation analysis (CCA) and wavelets with random forests (RF). The proposed algorithms first perform CCA and continuous wavelet transform of the canonical components to generate a number of features which include component autocorrelation values and wavelet coefficient magnitude values. A subset of the most important features is subsequently selected using RF and labelled observations (supervised case) or synthetic data constructed from the original observations (unsupervised case). The proposed algorithms are evaluated using realistic simulation data as well as 30min epochs of non-invasive EEG recordings obtained from ten patients with epilepsy. We assessed the performance of the proposed algorithms using classification performance and goodness-of-fit values for noisy and noise-free signal windows. In the simulation study, where the ground truth was known, the proposed algorithms yielded almost perfect performance. In the case of experimental data, where expert marking was performed, the results suggest that both the supervised and unsupervised algorithm versions were able to remove artifacts without affecting noise-free channels considerably, outperforming standard CCA, independent component analysis (ICA) and Lagged Auto-Mutual Information Clustering (LAMIC). The proposed algorithms achieved excellent performance for both simulation and experimental data. Importantly, for the first time to our knowledge, we were able to perform entirely unsupervised artifact removal, i.e. without using already marked noisy data segments, achieving performance that is comparable to the supervised case. Overall, the results suggest that the proposed algorithms yield significant future potential for improving EEG signal quality in research or clinical settings without the need for marking by expert neurophysiologists, EMG signal recording and user visual inspection. Copyright © 2017 International Federation of Clinical Neurophysiology. Published by Elsevier B.V. All rights reserved.

Wire connector classification with machine vision and a novel hybrid SVM

NASA Astrophysics Data System (ADS)

Chauhan, Vedang; Joshi, Keyur D.; Surgenor, Brian W.

2018-04-01

A machine vision-based system has been developed and tested that uses a novel hybrid Support Vector Machine (SVM) in a part inspection application with clear plastic wire connectors. The application required the system to differentiate between 4 different known styles of connectors plus one unknown style, for a total of 5 classes. The requirement to handle an unknown class is what necessitated the hybrid approach. The system was trained with the 4 known classes and tested with 5 classes (the 4 known plus the 1 unknown). The hybrid classification approach used two layers of SVMs: one layer was semi-supervised and the other layer was supervised. The semi-supervised SVM was a special case of unsupervised machine learning that classified test images as one of the 4 known classes (to accept) or as the unknown class (to reject). The supervised SVM classified test images as one of the 4 known classes and consequently would give false positives (FPs). Two methods were tested. The difference between the methods was that the order of the layers was switched. The method with the semi-supervised layer first gave an accuracy of 80% with 20% FPs. The method with the supervised layer first gave an accuracy of 98% with 0% FPs. Further work is being conducted to see if the hybrid approach works with other applications that have an unknown class requirement.

Unsupervised segmentation of lungs from chest radiographs

NASA Astrophysics Data System (ADS)

Ghosh, Payel; Antani, Sameer K.; Long, L. Rodney; Thoma, George R.

2012-03-01

This paper describes our preliminary investigations for deriving and characterizing coarse-level textural regions present in the lung field on chest radiographs using unsupervised grow-cut (UGC), a cellular automaton based unsupervised segmentation technique. The segmentation has been performed on a publicly available data set of chest radiographs. The algorithm is useful for this application because it automatically converges to a natural segmentation of the image from random seed points using low-level image features such as pixel intensity values and texture features. Our goal is to develop a portable screening system for early detection of lung diseases for use in remote areas in developing countries. This involves developing automated algorithms for screening x-rays as normal/abnormal with a high degree of sensitivity, and identifying lung disease patterns on chest x-rays. Automatically deriving and quantitatively characterizing abnormal regions present in the lung field is the first step toward this goal. Therefore, region-based features such as geometrical and pixel-value measurements were derived from the segmented lung fields. In the future, feature selection and classification will be performed to identify pathological conditions such as pulmonary tuberculosis on chest radiographs. Shape-based features will also be incorporated to account for occlusions of the lung field and by other anatomical structures such as the heart and diaphragm.

Rational Variety Mapping for Contrast-Enhanced Nonlinear Unsupervised Segmentation of Multispectral Images of Unstained Specimen

PubMed Central

Kopriva, Ivica; Hadžija, Mirko; Popović Hadžija, Marijana; Korolija, Marina; Cichocki, Andrzej

2011-01-01

A methodology is proposed for nonlinear contrast-enhanced unsupervised segmentation of multispectral (color) microscopy images of principally unstained specimens. The methodology exploits spectral diversity and spatial sparseness to find anatomical differences between materials (cells, nuclei, and background) present in the image. It consists of rth-order rational variety mapping (RVM) followed by matrix/tensor factorization. Sparseness constraint implies duality between nonlinear unsupervised segmentation and multiclass pattern assignment problems. Classes not linearly separable in the original input space become separable with high probability in the higher-dimensional mapped space. Hence, RVM mapping has two advantages: it takes implicitly into account nonlinearities present in the image (ie, they are not required to be known) and it increases spectral diversity (ie, contrast) between materials, due to increased dimensionality of the mapped space. This is expected to improve performance of systems for automated classification and analysis of microscopic histopathological images. The methodology was validated using RVM of the second and third orders of the experimental multispectral microscopy images of unstained sciatic nerve fibers (nervus ischiadicus) and of unstained white pulp in the spleen tissue, compared with a manually defined ground truth labeled by two trained pathophysiologists. The methodology can also be useful for additional contrast enhancement of images of stained specimens. PMID:21708116

Korean coastal water depth/sediment and land cover mapping (1:25,000) by computer analysis of LANDSAT imagery

NASA Technical Reports Server (NTRS)

Park, K. Y.; Miller, L. D.

1978-01-01

Computer analysis was applied to single date LANDSAT MSS imagery of a sample coastal area near Seoul, Korea equivalent to a 1:50,000 topographic map. Supervised image processing yielded a test classification map from this sample image containing 12 classes: 5 water depth/sediment classes, 2 shoreline/tidal classes, and 5 coastal land cover classes at a scale of 1:25,000 and with a training set accuracy of 76%. Unsupervised image classification was applied to a subportion of the site analyzed and produced classification maps comparable in results in a spatial sense. The results of this test indicated that it is feasible to produce such quantitative maps for detailed study of dynamic coastal processes given a LANDSAT image data base at sufficiently frequent time intervals.

UNMANNED AERIAL VEHICLE (UAV) HYPERSPECTRAL REMOTE SENSING FOR DRYLAND VEGETATION MONITORING

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nancy F. Glenn; Jessica J. Mitchell; Matthew O. Anderson

2012-06-01

UAV-based hyperspectral remote sensing capabilities developed by the Idaho National Lab and Idaho State University, Boise Center Aerospace Lab, were recently tested via demonstration flights that explored the influence of altitude on geometric error, image mosaicking, and dryland vegetation classification. The test flights successfully acquired usable flightline data capable of supporting classifiable composite images. Unsupervised classification results support vegetation management objectives that rely on mapping shrub cover and distribution patterns. Overall, supervised classifications performed poorly despite spectral separability in the image-derived endmember pixels. Future mapping efforts that leverage ground reference data, ultra-high spatial resolution photos and time series analysis shouldmore » be able to effectively distinguish native grasses such as Sandberg bluegrass (Poa secunda), from invasives such as burr buttercup (Ranunculus testiculatus) and cheatgrass (Bromus tectorum).« less

Study on Spatio-Temporal Change of Ecological Land in Yellow River Delta Based on RS&GIS

NASA Astrophysics Data System (ADS)

An, GuoQiang

2018-06-01

The temporal and spatial variation of ecological land use and its current distribution were studied to provide reference for the protection of original ecological land and ecological environment in the Yellow River Delta. Using RS colour synthesis, supervised classification, unsupervised classification, vegetation index and other methods to monitor the impact of human activities on the original ecological land in the past 30 years; using GIS technology to analyse the statistical data and construct the model of original ecological land area index to study the ecological land distribution status. The results show that the boundary of original ecological land in the Yellow River Delta had been pushed toward the coastline at an average speed of 0.8km per year due to human activities. In the past 20 years, a large amount of original ecological land gradually transformed into artificial ecological land. In view of the evolution and status of ecological land in the Yellow River Delta, related local departments should adopt differentiated and focused protection measures to protect the ecological land of the Yellow River Delta.

Deep SOMs for automated feature extraction and classification from big data streaming

NASA Astrophysics Data System (ADS)

Sakkari, Mohamed; Ejbali, Ridha; Zaied, Mourad

2017-03-01

In this paper, we proposed a deep self-organizing map model (Deep-SOMs) for automated features extracting and learning from big data streaming which we benefit from the framework Spark for real time streams and highly parallel data processing. The SOMs deep architecture is based on the notion of abstraction (patterns automatically extract from the raw data, from the less to more abstract). The proposed model consists of three hidden self-organizing layers, an input and an output layer. Each layer is made up of a multitude of SOMs, each map only focusing at local headmistress sub-region from the input image. Then, each layer trains the local information to generate more overall information in the higher layer. The proposed Deep-SOMs model is unique in terms of the layers architecture, the SOMs sampling method and learning. During the learning stage we use a set of unsupervised SOMs for feature extraction. We validate the effectiveness of our approach on large data sets such as Leukemia dataset and SRBCT. Results of comparison have shown that the Deep-SOMs model performs better than many existing algorithms for images classification.

Unsupervised domain adaptation for early detection of drought stress in hyperspectral images

NASA Astrophysics Data System (ADS)

Schmitter, P.; Steinrücken, J.; Römer, C.; Ballvora, A.; Léon, J.; Rascher, U.; Plümer, L.

2017-09-01

Hyperspectral images can be used to uncover physiological processes in plants if interpreted properly. Machine Learning methods such as Support Vector Machines (SVM) and Random Forests have been applied to estimate development of biomass and detect and predict plant diseases and drought stress. One basic requirement of machine learning implies, that training and testing is done in the same domain and the same distribution. Different genotypes, environmental conditions, illumination and sensors violate this requirement in most practical circumstances. Here, we present an approach, which enables the detection of physiological processes by transferring the prior knowledge within an existing model into a related target domain, where no label information is available. We propose a two-step transformation of the target features, which enables a direct application of an existing model. The transformation is evaluated by an objective function including additional prior knowledge about classification and physiological processes in plants. We have applied the approach to three sets of hyperspectral images, which were acquired with different plant species in different environments observed with different sensors. It is shown, that a classification model, derived on one of the sets, delivers satisfying classification results on the transformed features of the other data sets. Furthermore, in all cases early non-invasive detection of drought stress was possible.

Hyperparameterization of soil moisture statistical models for North America with Ensemble Learning Models (Elm)

NASA Astrophysics Data System (ADS)

Steinberg, P. D.; Brener, G.; Duffy, D.; Nearing, G. S.; Pelissier, C.

2017-12-01

Hyperparameterization, of statistical models, i.e. automated model scoring and selection, such as evolutionary algorithms, grid searches, and randomized searches, can improve forecast model skill by reducing errors associated with model parameterization, model structure, and statistical properties of training data. Ensemble Learning Models (Elm), and the related Earthio package, provide a flexible interface for automating the selection of parameters and model structure for machine learning models common in climate science and land cover classification, offering convenient tools for loading NetCDF, HDF, Grib, or GeoTiff files, decomposition methods like PCA and manifold learning, and parallel training and prediction with unsupervised and supervised classification, clustering, and regression estimators. Continuum Analytics is using Elm to experiment with statistical soil moisture forecasting based on meteorological forcing data from NASA's North American Land Data Assimilation System (NLDAS). There Elm is using the NSGA-2 multiobjective optimization algorithm for optimizing statistical preprocessing of forcing data to improve goodness-of-fit for statistical models (i.e. feature engineering). This presentation will discuss Elm and its components, including dask (distributed task scheduling), xarray (data structures for n-dimensional arrays), and scikit-learn (statistical preprocessing, clustering, classification, regression), and it will show how NSGA-2 is being used for automate selection of soil moisture forecast statistical models for North America.

A Novel Hybrid Dimension Reduction Technique for Undersized High Dimensional Gene Expression Data Sets Using Information Complexity Criterion for Cancer Classification

PubMed Central

Pamukçu, Esra; Bozdogan, Hamparsum; Çalık, Sinan

2015-01-01

Gene expression data typically are large, complex, and highly noisy. Their dimension is high with several thousand genes (i.e., features) but with only a limited number of observations (i.e., samples). Although the classical principal component analysis (PCA) method is widely used as a first standard step in dimension reduction and in supervised and unsupervised classification, it suffers from several shortcomings in the case of data sets involving undersized samples, since the sample covariance matrix degenerates and becomes singular. In this paper we address these limitations within the context of probabilistic PCA (PPCA) by introducing and developing a new and novel approach using maximum entropy covariance matrix and its hybridized smoothed covariance estimators. To reduce the dimensionality of the data and to choose the number of probabilistic PCs (PPCs) to be retained, we further introduce and develop celebrated Akaike's information criterion (AIC), consistent Akaike's information criterion (CAIC), and the information theoretic measure of complexity (ICOMP) criterion of Bozdogan. Six publicly available undersized benchmark data sets were analyzed to show the utility, flexibility, and versatility of our approach with hybridized smoothed covariance matrix estimators, which do not degenerate to perform the PPCA to reduce the dimension and to carry out supervised classification of cancer groups in high dimensions. PMID:25838836

Mapping sand and gravel pits in the Patuxent River watershed

NASA Technical Reports Server (NTRS)

Schmidt, T. J.; Witt, R. G.

1981-01-01

LANDSAT data from July 1973 and June 1978 for the Patuxent River Watershed of Maryland were processed in an effort to devise an economical method of monitoring the reclamation of sand and gravel pits. ASTEP-II and IDIMS software were utilized to derive signatures for sand and gravel pits and other land use/land cover types. Both unsupervised and supervised classifications of the two data sets were produced. Resultant statistics and color output products were compared in order to determine the extent of reclamation and expansion of sand and gravel pits over the five-year time span and to check the locations of more recent sand and gravel pits. Preliminary results indicate that, for a selected northern sub-acre, signatures derived for sand and gravel pits were nearly 90 percent accurate.

Stratification Learning: Detecting Mixed Density and Dimensionality in High Dimensional Point Clouds (PREPRINT)

DTIC Science & Technology

2006-09-01

Medioni, [11], estimates the local dimension using tensor voting . These recent works have clearly shown the necessity to go beyond manifold learning, into...2005. [11] P. Mordohai and G. Medioni. Unsupervised dimensionality estimation and manifold learning in high-dimensional spaces by tensor voting . In...walking, jumping, and arms waving. The whole run took 361 seconds in Matlab , while the classification time (PMM) can be neglected compared to the kNN

Adaptive fuzzy leader clustering of complex data sets in pattern recognition

NASA Technical Reports Server (NTRS)

Newton, Scott C.; Pemmaraju, Surya; Mitra, Sunanda

1992-01-01

A modular, unsupervised neural network architecture for clustering and classification of complex data sets is presented. The adaptive fuzzy leader clustering (AFLC) architecture is a hybrid neural-fuzzy system that learns on-line in a stable and efficient manner. The initial classification is performed in two stages: a simple competitive stage and a distance metric comparison stage. The cluster prototypes are then incrementally updated by relocating the centroid positions from fuzzy C-means system equations for the centroids and the membership values. The AFLC algorithm is applied to the Anderson Iris data and laser-luminescent fingerprint image data. It is concluded that the AFLC algorithm successfully classifies features extracted from real data, discrete or continuous.

Texture analysis based on the Hermite transform for image classification and segmentation

NASA Astrophysics Data System (ADS)

Estudillo-Romero, Alfonso; Escalante-Ramirez, Boris; Savage-Carmona, Jesus

2012-06-01

Texture analysis has become an important task in image processing because it is used as a preprocessing stage in different research areas including medical image analysis, industrial inspection, segmentation of remote sensed imaginary, multimedia indexing and retrieval. In order to extract visual texture features a texture image analysis technique is presented based on the Hermite transform. Psychovisual evidence suggests that the Gaussian derivatives fit the receptive field profiles of mammalian visual systems. The Hermite transform describes locally basic texture features in terms of Gaussian derivatives. Multiresolution combined with several analysis orders provides detection of patterns that characterizes every texture class. The analysis of the local maximum energy direction and steering of the transformation coefficients increase the method robustness against the texture orientation. This method presents an advantage over classical filter bank design because in the latter a fixed number of orientations for the analysis has to be selected. During the training stage, a subset of the Hermite analysis filters is chosen in order to improve the inter-class separability, reduce dimensionality of the feature vectors and computational cost during the classification stage. We exhaustively evaluated the correct classification rate of real randomly selected training and testing texture subsets using several kinds of common used texture features. A comparison between different distance measurements is also presented. Results of the unsupervised real texture segmentation using this approach and comparison with previous approaches showed the benefits of our proposal.

Availability of MudPIT data for classification of biological samples.

PubMed

Silvestre, Dario Di; Zoppis, Italo; Brambilla, Francesca; Bellettato, Valeria; Mauri, Giancarlo; Mauri, Pierluigi

2013-01-14

Mass spectrometry is an important analytical tool for clinical proteomics. Primarily employed for biomarker discovery, it is increasingly used for developing methods which may help to provide unambiguous diagnosis of biological samples. In this context, we investigated the classification of phenotypes by applying support vector machine (SVM) on experimental data obtained by MudPIT approach. In particular, we compared the performance capabilities of SVM by using two independent collection of complex samples and different data-types, such as mass spectra (m/z), peptides and proteins. Globally, protein and peptide data allowed a better discriminant informative content than experimental mass spectra (overall accuracy higher than 87% in both collection 1 and 2). These results indicate that sequencing of peptides and proteins reduces the experimental noise affecting the raw mass spectra, and allows the extraction of more informative features available for the effective classification of samples. In addition, proteins and peptides features selected by SVM matched for 80% with the differentially expressed proteins identified by the MAProMa software. These findings confirm the availability of the most label-free quantitative methods based on processing of spectral count and SEQUEST-based SCORE values. On the other hand, it stresses the usefulness of MudPIT data for a correct grouping of sample phenotypes, by applying both supervised and unsupervised learning algorithms. This capacity permit the evaluation of actual samples and it is a good starting point to translate proteomic methodology to clinical application.

Automatic Spatio-Temporal Flow Velocity Measurement in Small Rivers Using Thermal Image Sequences

NASA Astrophysics Data System (ADS)

Lin, D.; Eltner, A.; Sardemann, H.; Maas, H.-G.

2018-05-01

An automatic spatio-temporal flow velocity measurement approach, using an uncooled thermal camera, is proposed in this paper. The basic principle of the method is to track visible thermal features at the water surface in thermal camera image sequences. Radiometric and geometric calibrations are firstly implemented to remove vignetting effects in thermal imagery and to get the interior orientation parameters of the camera. An object-based unsupervised classification approach is then applied to detect the interest regions for data referencing and thermal feature tracking. Subsequently, GCPs are extracted to orient the river image sequences and local hot points are identified as tracking features. Afterwards, accurate dense tracking outputs are obtained using pyramidal Lucas-Kanade method. To validate the accuracy potential of the method, measurements obtained from thermal feature tracking are compared with reference measurements taken by a propeller gauge. Results show a great potential of automatic flow velocity measurement in small rivers using imagery from a thermal camera.

A case study of carbon fluxes from land change in the southwest Brazilian Amazon

USGS Publications Warehouse

Barrett, K.; Rogan, J.; Eastman, J.R.

2009-01-01

Worldwide, land change is responsible for one-fifth of anthropogenic carbon emissions. In Brazil, three-quarters of carbon emissions originate from land change. This study represents a municipal-scale study of carbon fluxes from vegetation in Rio Branco, Brazil. Land-cover maps of pasture, forest, and secondary growth from 1993, 1996, 1999, and 2003 were produced using an unsupervised classification method (overall accuracy = 89%). Carbon fluxes from land change over the decade of imagery were estimated from transitions between land-cover categories for each time interval. This article presents new methods for estimating emissions reductions from carbon stored in the vegetation that replaces forests (e.g., pasture) and sequestration by new (>10-15 years) forests, which reduced gross emissions by 16, 15, and 22% for the period of 1993-1996, 1996-1999, and 1999-2003, respectively. The methods used in the analysis are broadly applicable and provide a comprehensive characterization of regional-scale carbon fluxes from land change.

Experiments in automatic word class and word sense identification for information retrieval

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gauch, S.; Futrelle, R.P.

Automatic identification of related words and automatic detection of word senses are two long-standing goals of researchers in natural language processing. Word class information and word sense identification may enhance the performance of information retrieval system4ms. Large online corpora and increased computational capabilities make new techniques based on corpus linguisitics feasible. Corpus-based analysis is especially needed for corpora from specialized fields for which no electronic dictionaries or thesauri exist. The methods described here use a combination of mutual information and word context to establish word similarities. Then, unsupervised classification is done using clustering in the word space, identifying word classesmore » without pretagging. We also describe an extension of the method to handle the difficult problems of disambiguation and of determining part-of-speech and semantic information for low-frequency words. The method is powerful enough to produce high-quality results on a small corpus of 200,000 words from abstracts in a field of molecular biology.« less

Performance Assessment of Kernel Density Clustering for Gene Expression Profile Data

PubMed Central

Zeng, Beiyan; Chen, Yiping P.; Smith, Oscar H.

2003-01-01

Kernel density smoothing techniques have been used in classification or supervised learning of gene expression profile (GEP) data, but their applications to clustering or unsupervised learning of those data have not been explored and assessed. Here we report a kernel density clustering method for analysing GEP data and compare its performance with the three most widely-used clustering methods: hierarchical clustering, K-means clustering, and multivariate mixture model-based clustering. Using several methods to measure agreement, between-cluster isolation, and withincluster coherence, such as the Adjusted Rand Index, the Pseudo F test, the r2 test, and the profile plot, we have assessed the effectiveness of kernel density clustering for recovering clusters, and its robustness against noise on clustering both simulated and real GEP data. Our results show that the kernel density clustering method has excellent performance in recovering clusters from simulated data and in grouping large real expression profile data sets into compact and well-isolated clusters, and that it is the most robust clustering method for analysing noisy expression profile data compared to the other three methods assessed. PMID:18629292

Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework.

PubMed

Yang, Lingjian; Ainali, Chrysanthi; Tsoka, Sophia; Papageorgiou, Lazaros G

2014-12-05

Applying machine learning methods on microarray gene expression profiles for disease classification problems is a popular method to derive biomarkers, i.e. sets of genes that can predict disease state or outcome. Traditional approaches where expression of genes were treated independently suffer from low prediction accuracy and difficulty of biological interpretation. Current research efforts focus on integrating information on protein interactions through biochemical pathway datasets with expression profiles to propose pathway-based classifiers that can enhance disease diagnosis and prognosis. As most of the pathway activity inference methods in literature are either unsupervised or applied on two-class datasets, there is good scope to address such limitations by proposing novel methodologies. A supervised multiclass pathway activity inference method using optimisation techniques is reported. For each pathway expression dataset, patterns of its constituent genes are summarised into one composite feature, termed pathway activity, and a novel mathematical programming model is proposed to infer this feature as a weighted linear summation of expression of its constituent genes. Gene weights are determined by the optimisation model, in a way that the resulting pathway activity has the optimal discriminative power with regards to disease phenotypes. Classification is then performed on the resulting low-dimensional pathway activity profile. The model was evaluated through a variety of published gene expression profiles that cover different types of disease. We show that not only does it improve classification accuracy, but it can also perform well in multiclass disease datasets, a limitation of other approaches from the literature. Desirable features of the model include the ability to control the maximum number of genes that may participate in determining pathway activity, which may be pre-specified by the user. Overall, this work highlights the potential of building pathway-based multi-phenotype classifiers for accurate disease diagnosis and prognosis problems.

Data Exploration using Unsupervised Feature Extraction for Mixed Micro-Seismic Signals

NASA Astrophysics Data System (ADS)

Meyer, Matthias; Weber, Samuel; Beutel, Jan

2017-04-01

We present a system for the analysis of data originating in a multi-sensor and multi-year experiment focusing on slope stability and its underlying processes in fractured permafrost rock walls undertaken at 3500m a.s.l. on the Matterhorn Hörnligrat, (Zermatt, Switzerland). This system incorporates facilities for the transmission, management and storage of large-scales of data ( 7 GB/day), preprocessing and aggregation of multiple sensor types, machine-learning based automatic feature extraction for micro-seismic and acoustic emission data and interactive web-based visualization of the data. Specifically, a combination of three types of sensors are used to profile the frequency spectrum from 1 Hz to 80 kHz with the goal to identify the relevant destructive processes (e.g. micro-cracking and fracture propagation) leading to the eventual destabilization of large rock masses. The sensors installed for this profiling experiment (2 geophones, 1 accelerometers and 2 piezo-electric sensors for detecting acoustic emission), are further augmented with sensors originating from a previous activity focusing on long-term monitoring of temperature evolution and rock kinematics with the help of wireless sensor networks (crackmeters, cameras, weather station, rock temperature profiles, differential GPS) [Hasler2012]. In raw format, the data generated by the different types of sensors, specifically the micro-seismic and acoustic emission sensors, is strongly heterogeneous, in part unsynchronized and the storage and processing demand is large. Therefore, a purpose-built signal preprocessing and event-detection system is used. While the analysis of data from each individual sensor follows established methods, the application of all these sensor types in combination within a field experiment is unique. Furthermore, experience and methods from using such sensors in laboratory settings cannot be readily transferred to the mountain field site setting with its scale and full exposure to the natural environment. Consequently, many state-of-the-art algorithms for big data analysis and event classification requiring a ground truth dataset cannot be applied. The above mentioned challenges require a tool for data exploration. In the presented system, data exploration is supported by unsupervised feature learning based on convolutional neural networks, which is used to automatically extract common features for preliminary clustering and outlier detection. With this information, an interactive web-tool allows for a fast identification of interesting time segments on which segment-selective algorithms for visualization, feature extraction and statistics can be applied. The combination of manual labeling based and unsupervised feature extraction provides an event catalog for classification of different characteristic events related to internal progression of micro-crack in steep fractured bedrock permafrost. References Hasler, A., S. Gruber, and J. Beutel (2012), Kinematics of steep bedrock permafrost, J. Geophys. Res., 117, F01016, doi:10.1029/2011JF001981.

STAR-GALAXY CLASSIFICATION IN MULTI-BAND OPTICAL IMAGING

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fadely, Ross; Willman, Beth; Hogg, David W.

2012-11-20

Ground-based optical surveys such as PanSTARRS, DES, and LSST will produce large catalogs to limiting magnitudes of r {approx}> 24. Star-galaxy separation poses a major challenge to such surveys because galaxies-even very compact galaxies-outnumber halo stars at these depths. We investigate photometric classification techniques on stars and galaxies with intrinsic FWHM <0.2 arcsec. We consider unsupervised spectral energy distribution template fitting and supervised, data-driven support vector machines (SVMs). For template fitting, we use a maximum likelihood (ML) method and a new hierarchical Bayesian (HB) method, which learns the prior distribution of template probabilities from the data. SVM requires training datamore » to classify unknown sources; ML and HB do not. We consider (1) a best-case scenario (SVM{sub best}) where the training data are (unrealistically) a random sampling of the data in both signal-to-noise and demographics and (2) a more realistic scenario where training is done on higher signal-to-noise data (SVM{sub real}) at brighter apparent magnitudes. Testing with COSMOS ugriz data, we find that HB outperforms ML, delivering {approx}80% completeness, with purity of {approx}60%-90% for both stars and galaxies. We find that no algorithm delivers perfect performance and that studies of metal-poor main-sequence turnoff stars may be challenged by poor star-galaxy separation. Using the Receiver Operating Characteristic curve, we find a best-to-worst ranking of SVM{sub best}, HB, ML, and SVM{sub real}. We conclude, therefore, that a well-trained SVM will outperform template-fitting methods. However, a normally trained SVM performs worse. Thus, HB template fitting may prove to be the optimal classification method in future surveys.« less

Taxonomy-aware feature engineering for microbiome classification.

PubMed

Oudah, Mai; Henschel, Andreas

2018-06-15

What is a healthy microbiome? The pursuit of this and many related questions, especially in light of the recently recognized microbial component in a wide range of diseases has sparked a surge in metagenomic studies. They are often not simply attributable to a single pathogen but rather are the result of complex ecological processes. Relatedly, the increasing DNA sequencing depth and number of samples in metagenomic case-control studies enabled the applicability of powerful statistical methods, e.g. Machine Learning approaches. For the latter, the feature space is typically shaped by the relative abundances of operational taxonomic units, as determined by cost-effective phylogenetic marker gene profiles. While a substantial body of microbiome/microbiota research involves unsupervised and supervised Machine Learning, very little attention has been put on feature selection and engineering. We here propose the first algorithm to exploit phylogenetic hierarchy (i.e. an all-encompassing taxonomy) in feature engineering for microbiota classification. The rationale is to exploit the often mono- or oligophyletic distribution of relevant (but hidden) traits by virtue of taxonomic abstraction. The algorithm is embedded in a comprehensive microbiota classification pipeline, which we applied to a diverse range of datasets, distinguishing healthy from diseased microbiota samples. We demonstrate substantial improvements over the state-of-the-art microbiota classification tools in terms of classification accuracy, regardless of the actual Machine Learning technique while using drastically reduced feature spaces. Moreover, generalized features bear great explanatory value: they provide a concise description of conditions and thus help to provide pathophysiological insights. Indeed, the automatically and reproducibly derived features are consistent with previously published domain expert analyses.

Highly efficient classification and identification of human pathogenic bacteria by MALDI-TOF MS.

PubMed

Hsieh, Sen-Yung; Tseng, Chiao-Li; Lee, Yun-Shien; Kuo, An-Jing; Sun, Chien-Feng; Lin, Yen-Hsiu; Chen, Jen-Kun

2008-02-01

Accurate and rapid identification of pathogenic microorganisms is of critical importance in disease treatment and public health. Conventional work flows are time-consuming, and procedures are multifaceted. MS can be an alternative but is limited by low efficiency for amino acid sequencing as well as low reproducibility for spectrum fingerprinting. We systematically analyzed the feasibility of applying MS for rapid and accurate bacterial identification. Directly applying bacterial colonies without further protein extraction to MALDI-TOF MS analysis revealed rich peak contents and high reproducibility. The MS spectra derived from 57 isolates comprising six human pathogenic bacterial species were analyzed using both unsupervised hierarchical clustering and supervised model construction via the Genetic Algorithm. Hierarchical clustering analysis categorized the spectra into six groups precisely corresponding to the six bacterial species. Precise classification was also maintained in an independently prepared set of bacteria even when the numbers of m/z values were reduced to six. In parallel, classification models were constructed via Genetic Algorithm analysis. A model containing 18 m/z values accurately classified independently prepared bacteria and identified those species originally not used for model construction. Moreover bacteria fewer than 10(4) cells and different species in bacterial mixtures were identified using the classification model approach. In conclusion, the application of MALDI-TOF MS in combination with a suitable model construction provides a highly accurate method for bacterial classification and identification. The approach can identify bacteria with low abundance even in mixed flora, suggesting that a rapid and accurate bacterial identification using MS techniques even before culture can be attained in the near future.

An Unsupervised Method for Uncovering Morphological Chains (Open Access, Publisher’s Version)

DTIC Science & Technology

2015-03-08

Consortium. Marco Baroni, Johannes Matiasek, and Harald Trost. 2002. Unsupervised discovery of morphologically re- lated words based on orthographic and...Better word representations with re- cursive neural networks for morphology. In CoNLL, Sofia, Bulgaria. Mohamed Maamouri, Ann Bies, Hubert Jin, and Tim

Knee cartilage extraction and bone-cartilage interface analysis from 3D MRI data sets

NASA Astrophysics Data System (ADS)

Tamez-Pena, Jose G.; Barbu-McInnis, Monica; Totterman, Saara

2004-05-01

This works presents a robust methodology for the analysis of the knee joint cartilage and the knee bone-cartilage interface from fused MRI sets. The proposed approach starts by fusing a set of two 3D MR images the knee. Although the proposed method is not pulse sequence dependent, the first sequence should be programmed to achieve good contrast between bone and cartilage. The recommended second pulse sequence is one that maximizes the contrast between cartilage and surrounding soft tissues. Once both pulse sequences are fused, the proposed bone-cartilage analysis is done in four major steps. First, an unsupervised segmentation algorithm is used to extract the femur, the tibia, and the patella. Second, a knowledge based feature extraction algorithm is used to extract the femoral, tibia and patellar cartilages. Third, a trained user corrects cartilage miss-classifications done by the automated extracted cartilage. Finally, the final segmentation is the revisited using an unsupervised MAP voxel relaxation algorithm. This final segmentation has the property that includes the extracted bone tissue as well as all the cartilage tissue. This is an improvement over previous approaches where only the cartilage was segmented. Furthermore, this approach yields very reproducible segmentation results in a set of scan-rescan experiments. When these segmentations were coupled with a partial volume compensated surface extraction algorithm the volume, area, thickness measurements shows precisions around 2.6%

Unsupervised classification of lidar-based vegetation structure metrics at Jean Lafitte National Historical Park and Preserve

USGS Publications Warehouse

Kranenburg, Christine J.; Palaseanu-Lovejoy, Monica; Nayegandhi, Amar; Brock, John; Woodman, Robert

2012-01-01

Traditional vegetation maps capture the horizontal distribution of various vegetation properties, for example, type, species and age/senescence, across a landscape. Ecologists have long known, however, that many important forest properties, for example, interior microclimate, carbon capacity, biomass and habitat suitability, are also dependent on the vertical arrangement of branches and leaves within tree canopies. The objective of this study was to use a digital elevation model (DEM) along with tree canopy-structure metrics derived from a lidar survey conducted using the Experimental Advanced Airborne Research Lidar (EAARL) to capture a three-dimensional view of vegetation communities in the Barataria Preserve unit of Jean Lafitte National Historical Park and Preserve, Louisiana. The EAARL instrument is a raster-scanning, full waveform-resolving, small-footprint, green-wavelength (532-nanometer) lidar system designed to map coastal bathymetry, topography and vegetation structure simultaneously. An unsupervised clustering procedure was then applied to the 3-dimensional-based metrics and DEM to produce a vegetation map based on the vertical structure of the park's vegetation, which includes a flotant marsh, scrub-shrub wetland, bottomland hardwood forest, and baldcypress-tupelo swamp forest. This study was completed in collaboration with the National Park Service Inventory and Monitoring Program's Gulf Coast Network. The methods presented herein are intended to be used as part of a cost-effective monitoring tool to capture change in park resources.

Comparison of MSS and TM Data for Landcover Classification in the Chesapeake Bay Area: a Preliminary Report. [Taylor's Island, Maryland

NASA Technical Reports Server (NTRS)

Mulligan, P. J.; Gervin, J. C.; Lu, Y. C.

1985-01-01

An area bordering the Eastern Shore of the Chesapeake Bay was selected for study and classified using unsupervised techniques applied to LANDSAT-2 MSS data and several band combinations of LANDSAT-4 TM data. The accuracies of these Level I land cover classifications were verified using the Taylor's Island USGS 7.5 minute topographic map which was photointerpreted, digitized and rasterized. The the Taylor's Island map, comparing the MSS and TM three band (2 3 4) classifications, the increased resolution of TM produced a small improvement in overall accuracy of 1% correct due primarily to a small improvement, and 1% and 3%, in areas such as water and woodland. This was expected as the MSS data typically produce high accuracies for categories which cover large contiguous areas. However, in the categories covering smaller areas within the map there was generally an improvement of at least 10%. Classification of the important residential category improved 12%, and wetlands were mapped with 11% greater accuracy.

Unsupervised frequency-recognition method of SSVEPs using a filter bank implementation of binary subband CCA

NASA Astrophysics Data System (ADS)

Rabiul Islam, Md; Khademul Islam Molla, Md; Nakanishi, Masaki; Tanaka, Toshihisa

2017-04-01

Objective. Recently developed effective methods for detection commands of steady-state visual evoked potential (SSVEP)-based brain-computer interface (BCI) that need calibration for visual stimuli, which cause more time and fatigue prior to the use, as the number of commands increases. This paper develops a novel unsupervised method based on canonical correlation analysis (CCA) for accurate detection of stimulus frequency. Approach. A novel unsupervised technique termed as binary subband CCA (BsCCA) is implemented in a multiband approach to enhance the frequency recognition performance of SSVEP. In BsCCA, two subbands are used and a CCA-based correlation coefficient is computed for the individual subbands. In addition, a reduced set of artificial reference signals is used to calculate CCA for the second subband. The analyzing SSVEP is decomposed into multiple subband and the BsCCA is implemented for each one. Then, the overall recognition score is determined by a weighted sum of the canonical correlation coefficients obtained from each band. Main results. A 12-class SSVEP dataset (frequency range: 9.25-14.75 Hz with an interval of 0.5 Hz) for ten healthy subjects are used to evaluate the performance of the proposed method. The results suggest that BsCCA significantly improves the performance of SSVEP-based BCI compared to the state-of-the-art methods. The proposed method is an unsupervised approach with averaged information transfer rate (ITR) of 77.04 bits min-1 across 10 subjects. The maximum individual ITR is 107.55 bits min-1 for 12-class SSVEP dataset, whereas, the ITR of 69.29 and 69.44 bits min-1 are achieved with CCA and NCCA respectively. Significance. The statistical test shows that the proposed unsupervised method significantly improves the performance of the SSVEP-based BCI. It can be usable in real world applications.

Remote Sensing Monitoring of Changes in Soil Salinity: A Case Study in Inner Mongolia, China.

PubMed

Wu, Jingwei; Vincent, Bernard; Yang, Jinzhong; Bouarfa, Sami; Vidal, Alain

2008-11-07

This study used archived remote sensing images to depict the history of changes in soil salinity in the Hetao Irrigation District in Inner Mongolia, China, with the purpose of linking these changes with land and water management practices and to draw lessons for salinity control. Most data came from LANDSAT satellite images taken in 1973, 1977, 1988, 1991, 1996, 2001, and 2006. In these years salt-affected areas were detected using a normal supervised classification method. Corresponding cropped areas were detected from NVDI (Normalized Difference Vegetation Index) values using an unsupervised method. Field samples and agricultural statistics were used to estimate the accuracy of the classification. Historical data concerning irrigation/drainage and the groundwater table were used to analyze the relation between changes in soil salinity and land and water management practices. Results showed that: (1) the overall accuracy of remote sensing in detecting soil salinity was 90.2%, and in detecting cropped area, 98%; (2) the installation/innovation of the drainage system did help to control salinity; and (3) a low ratio of cropped land helped control salinity in the Hetao Irrigation District. These findings suggest that remote sensing is a useful tool to detect soil salinity and has potential in evaluating and improving land and water management practices.

Area Series Handbook: Hungary: A Country Study

DTIC Science & Technology

1991-02-01

Wi. c hmeier indl Smith mote iniager, interpi-t.nton. and (JS5 systems. 1 978). Because R) is generally constant within an area Readers interested in...MSS) image (#850871 16251 X0, 6 July 20, 1986) was obtained for the Fort Hood area. A Products computer- generated , unsupervised classification wasmade...conservation prac- reciprocal of C, the equation becomes tices, however, are generally incompatible with military EI = (R x K x LS x P)/T training. Therefore

Wetland delineation with IKONOS high-resolution satellite imagery, Fort Custer Training Center, Battle Creek, Michigan, 2005

USGS Publications Warehouse

Fuller, L.M.; Morgan, T.R.; Aichele, Stephen S.

2006-01-01

The Michigan Army National Guard’s Fort Custer Training Center (FCTC) in Battle Creek, Mich., has the responsibility to protect wetland resources on the training grounds while providing training opportunities, and for future development planning at the facility. The National Wetlands Inventory (NWI) data have been the primary wetland-boundary resource, but a check on scale and accuracy of the wetland boundary information for the Fort Custer Training Center was needed. In cooperation with the FCTC, the U.S. Geological Survey (USGS) used an early spring IKONOS pan-sharpened satellite image to delineate the wetlands and create a more accurate wetland map for the FCTC. The USGS tested automated approaches (supervised and unsupervised classifications) to identify the wetland areas from the IKONOS satellite image, but the automated approaches alone did not yield accurate results. To ensure accurate wetland boundaries, the final wetland map was manually digitized on the basis of the automated supervised and unsupervised classifications, in combination with NWI data, field verifications, and visual interpretation of the IKONOS satellite image. The final wetland areas digitized from the IKONOS satellite imagery were similar to those in NWI; however, the wetland boundaries differed in some areas, a few wetlands mapped on the NWI were determined not to be wetlands from the IKONOS image and field verification, and additional previously unmapped wetlands not recognized by the NWI were identified from the IKONOS image.

Unsupervised classification of scattering behavior using radar polarimetry data

NASA Technical Reports Server (NTRS)

Van Zyl, Jakob J.

1989-01-01

The use of an imaging radar polarimeter data for unsupervised classification of scattering behavior is described by comparing the polarization properties of each pixel in a image to that of simple classes of scattering such as even number of reflections, odd number of reflections, and diffuse scattering. For example, when this algorithm is applied to data acquired over the San Francisco Bay area in California, it classifies scattering by the ocean as being similar to that predicted by the class of odd number of reflections, scattering by the urban area as being similar to that predicted by the class of even number of reflections, and scattering by the Golden Gate Park as being similar to that predicted by the diffuse scattering class. It also classifies the scattering by a lighthouse in the ocean and boats on the ocean surface as being similar to that predicted by the even number of reflections class, making it easy to identify these objects against the background of the surrounding ocean. The algorithm is also applied to forested areas and shows that scattering from clear-cut areas and agricultural fields is mostly similar to that predicted by the odd number of reflections class, while the scattering from tree-covered areas generally is classified as being a mixture of pixels exhibiting the characteristics of all three classes, although each pixel is identified with only a single class.

Correlation between aircraft MSS and LIDAR remotely sensed data on a forested wetland in South Carolina

NASA Technical Reports Server (NTRS)

Jensen, John R.; Hodgson, Michael E.; Mackey, Halkard E., Jr.; Krabill, William

1987-01-01

Wetlands in a portion of the Savannah River swamp forest, the Steel Creek Delta, were mapped using April 26, 1985 high-resolution aircraft multispectral scanner (MSS) data. Due to the complex spectral characteristics of the wetland vegetation, it was necessary to implement several techniques in the classification of the MSS imagery of the Steel Creek Delta. In particular, when performing unsupervised classification, an iterative cluster busting technique was used which simplified the cluster labeling process. In addition to the MSS data, light detecting and ranging (LIDAR) data were acquired by National Aeronautics and Space Administration (NASA) personnel along two flightlines over the Steel Creek Delta. These data were registered with the wetland classification map and correlated. Statistical analyses demonstrated that the laser derived canopy height information was significantly correlated with the Steel Creek Delta wetland classes encountered along the profiling transect of the LIDAR data.

Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin

PubMed Central

Seer-Linnemayr, Charlotte; Ravelli, Raimond B. G.; Matadeen, Rishi; De Carlo, Sacha; Alewijnse, Bart; Portugal, Rodrigo V.; Pannu, Navraj S.; Schatz, Michael; van Heel, Marin

2017-01-01

Single-particle cryogenic electron microscopy (cryo-EM) can now yield near-atomic resolution structures of biological complexes. However, the reference-based alignment algorithms commonly used in cryo-EM suffer from reference bias, limiting their applicability (also known as the ‘Einstein from random noise’ problem). Low-dose cryo-EM therefore requires robust and objective approaches to reveal the structural information contained in the extremely noisy data, especially when dealing with small structures. A reference-free pipeline is presented for obtaining near-atomic resolution three-dimensional reconstructions from heterogeneous (‘four-dimensional’) cryo-EM data sets. The methodologies integrated in this pipeline include a posteriori camera correction, movie-based full-data-set contrast transfer function determination, movie-alignment algorithms, (Fourier-space) multivariate statistical data compression and unsupervised classification, ‘random-startup’ three-dimensional reconstructions, four-dimensional structural refinements and Fourier shell correlation criteria for evaluating anisotropic resolution. The procedures exclusively use information emerging from the data set itself, without external ‘starting models’. Euler-angle assignments are performed by angular reconstitution rather than by the inherently slower projection-matching approaches. The comprehensive ‘ABC-4D’ pipeline is based on the two-dimensional reference-free ‘alignment by classification’ (ABC) approach, where similar images in similar orientations are grouped by unsupervised classification. Some fundamental differences between X-ray crystallography versus single-particle cryo-EM data collection and data processing are discussed. The structure of the giant haemoglobin from Lumbricus terrestris at a global resolution of ∼3.8 Å is presented as an example of the use of the ABC-4D procedure. PMID:28989723

Down-Regulation of Olfactory Receptors in Response to Traumatic Brain Injury Promotes Risk for Alzheimers Disease

DTIC Science & Technology

2015-12-01

group assignment of samples in unsupervised hierarchical clustering by the Unweighted Pair-Group Method using Arithmetic averages ( UPGMA ) based on...log2 transformed MAS5.0 signal values; probe set clustering was performed by the UPGMA method using Cosine correlation as the similarity met- ric. For...differentially-regulated genes identified were subjected to unsupervised hierarchical clustering analysis using the UPGMA algorithm with cosine correlation as

A Novel Semi-Supervised Methodology for Extracting Tumor Type-Specific MRS Sources in Human Brain Data

PubMed Central

Ortega-Martorell, Sandra; Ruiz, Héctor; Vellido, Alfredo; Olier, Iván; Romero, Enrique; Julià-Sapé, Margarida; Martín, José D.; Jarman, Ian H.; Arús, Carles; Lisboa, Paulo J. G.

2013-01-01

Background The clinical investigation of human brain tumors often starts with a non-invasive imaging study, providing information about the tumor extent and location, but little insight into the biochemistry of the analyzed tissue. Magnetic Resonance Spectroscopy can complement imaging by supplying a metabolic fingerprint of the tissue. This study analyzes single-voxel magnetic resonance spectra, which represent signal information in the frequency domain. Given that a single voxel may contain a heterogeneous mix of tissues, signal source identification is a relevant challenge for the problem of tumor type classification from the spectroscopic signal. Methodology/Principal Findings Non-negative matrix factorization techniques have recently shown their potential for the identification of meaningful sources from brain tissue spectroscopy data. In this study, we use a convex variant of these methods that is capable of handling negatively-valued data and generating sources that can be interpreted as tumor class prototypes. A novel approach to convex non-negative matrix factorization is proposed, in which prior knowledge about class information is utilized in model optimization. Class-specific information is integrated into this semi-supervised process by setting the metric of a latent variable space where the matrix factorization is carried out. The reported experimental study comprises 196 cases from different tumor types drawn from two international, multi-center databases. The results indicate that the proposed approach outperforms a purely unsupervised process by achieving near perfect correlation of the extracted sources with the mean spectra of the tumor types. It also improves tissue type classification. Conclusions/Significance We show that source extraction by unsupervised matrix factorization benefits from the integration of the available class information, so operating in a semi-supervised learning manner, for discriminative source identification and brain tumor labeling from single-voxel spectroscopy data. We are confident that the proposed methodology has wider applicability for biomedical signal processing. PMID:24376744

An unsupervised method for quantifying the behavior of paired animals

NASA Astrophysics Data System (ADS)

Klibaite, Ugne; Berman, Gordon J.; Cande, Jessica; Stern, David L.; Shaevitz, Joshua W.

2017-02-01

Behaviors involving the interaction of multiple individuals are complex and frequently crucial for an animal’s survival. These interactions, ranging across sensory modalities, length scales, and time scales, are often subtle and difficult to characterize. Contextual effects on the frequency of behaviors become even more difficult to quantify when physical interaction between animals interferes with conventional data analysis, e.g. due to visual occlusion. We introduce a method for quantifying behavior in fruit fly interaction that combines high-throughput video acquisition and tracking of individuals with recent unsupervised methods for capturing an animal’s entire behavioral repertoire. We find behavioral differences between solitary flies and those paired with an individual of the opposite sex, identifying specific behaviors that are affected by social and spatial context. Our pipeline allows for a comprehensive description of the interaction between two individuals using unsupervised machine learning methods, and will be used to answer questions about the depth of complexity and variance in fruit fly courtship.

Unsupervised discovery of information structure in biomedical documents.

PubMed

Kiela, Douwe; Guo, Yufan; Stenius, Ulla; Korhonen, Anna

2015-04-01

Information structure (IS) analysis is a text mining technique, which classifies text in biomedical articles into categories that capture different types of information, such as objectives, methods, results and conclusions of research. It is a highly useful technique that can support a range of Biomedical Text Mining tasks and can help readers of biomedical literature find information of interest faster, accelerating the highly time-consuming process of literature review. Several approaches to IS analysis have been presented in the past, with promising results in real-world biomedical tasks. However, all existing approaches, even weakly supervised ones, require several hundreds of hand-annotated training sentences specific to the domain in question. Because biomedicine is subject to considerable domain variation, such annotations are expensive to obtain. This makes the application of IS analysis across biomedical domains difficult. In this article, we investigate an unsupervised approach to IS analysis and evaluate the performance of several unsupervised methods on a large corpus of biomedical abstracts collected from PubMed. Our best unsupervised algorithm (multilevel-weighted graph clustering algorithm) performs very well on the task, obtaining over 0.70 F scores for most IS categories when applied to well-known IS schemes. This level of performance is close to that of lightly supervised IS methods and has proven sufficient to aid a range of practical tasks. Thus, using an unsupervised approach, IS could be applied to support a wide range of tasks across sub-domains of biomedicine. We also demonstrate that unsupervised learning brings novel insights into IS of biomedical literature and discovers information categories that are not present in any of the existing IS schemes. The annotated corpus and software are available at http://www.cl.cam.ac.uk/∼dk427/bio14info.html. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Wavelet-based unsupervised learning method for electrocardiogram suppression in surface electromyograms.

PubMed

Niegowski, Maciej; Zivanovic, Miroslav

2016-03-01

We present a novel approach aimed at removing electrocardiogram (ECG) perturbation from single-channel surface electromyogram (EMG) recordings by means of unsupervised learning of wavelet-based intensity images. The general idea is to combine the suitability of certain wavelet decomposition bases which provide sparse electrocardiogram time-frequency representations, with the capacity of non-negative matrix factorization (NMF) for extracting patterns from images. In order to overcome convergence problems which often arise in NMF-related applications, we design a novel robust initialization strategy which ensures proper signal decomposition in a wide range of ECG contamination levels. Moreover, the method can be readily used because no a priori knowledge or parameter adjustment is needed. The proposed method was evaluated on real surface EMG signals against two state-of-the-art unsupervised learning algorithms and a singular spectrum analysis based method. The results, expressed in terms of high-to-low energy ratio, normalized median frequency, spectral power difference and normalized average rectified value, suggest that the proposed method enables better ECG-EMG separation quality than the reference methods. Copyright © 2015 IPEM. Published by Elsevier Ltd. All rights reserved.

Rational variety mapping for contrast-enhanced nonlinear unsupervised segmentation of multispectral images of unstained specimen.

PubMed

Kopriva, Ivica; Hadžija, Mirko; Popović Hadžija, Marijana; Korolija, Marina; Cichocki, Andrzej

2011-08-01

A methodology is proposed for nonlinear contrast-enhanced unsupervised segmentation of multispectral (color) microscopy images of principally unstained specimens. The methodology exploits spectral diversity and spatial sparseness to find anatomical differences between materials (cells, nuclei, and background) present in the image. It consists of rth-order rational variety mapping (RVM) followed by matrix/tensor factorization. Sparseness constraint implies duality between nonlinear unsupervised segmentation and multiclass pattern assignment problems. Classes not linearly separable in the original input space become separable with high probability in the higher-dimensional mapped space. Hence, RVM mapping has two advantages: it takes implicitly into account nonlinearities present in the image (ie, they are not required to be known) and it increases spectral diversity (ie, contrast) between materials, due to increased dimensionality of the mapped space. This is expected to improve performance of systems for automated classification and analysis of microscopic histopathological images. The methodology was validated using RVM of the second and third orders of the experimental multispectral microscopy images of unstained sciatic nerve fibers (nervus ischiadicus) and of unstained white pulp in the spleen tissue, compared with a manually defined ground truth labeled by two trained pathophysiologists. The methodology can also be useful for additional contrast enhancement of images of stained specimens. Copyright © 2011 American Society for Investigative Pathology. Published by Elsevier Inc. All rights reserved.

Novel techniques for characterization of hydrocarbon emission sources in the Barnett Shale

NASA Astrophysics Data System (ADS)

Nathan, Brian Joseph

Changes in ambient atmospheric hydrocarbon concentrations can have both short-term and long-term effects on the atmosphere and on human health. Thus, accurate characterization of emissions sources is critically important. The recent boom in shale gas production has led to an increase in hydrocarbon emissions from associated processes, though the exact extent is uncertain. As an original quantification technique, a model airplane equipped with a specially-designed, open-path methane sensor was flown multiple times over a natural gas compressor station in the Barnett Shale in October 2013. A linear optimization was introduced to a standard Gaussian plume model in an effort to determine the most probable emission rate coming from the station. This is shown to be a suitable approach given an ideal source with a single, central plume. Separately, an analysis was performed to characterize the nonmethane hydrocarbons in the Barnett during the same period. Starting with ambient hourly concentration measurements of forty-six hydrocarbon species, Lagrangian air parcel trajectories were implemented in a meteorological model to extend the resolution of these measurements and achieve domain-fillings of the region for the period of interest. A self-organizing map (a type of unsupervised classification) was then utilized to reduce the dimensionality of the total multivariate set of grids into characteristic one-dimensional signatures. By also introducing a self-organizing map classification of the contemporary wind measurements, the spatial hydrocarbon characterizations are analyzed for periods with similar wind conditions. The accuracy of the classification is verified through assessment of observed spatial mixing ratio enhancements of key species, through site-comparisons with a related long-term study, and through a random forest analysis (an ensemble learning method of supervised classification) to determine the most important species for defining key classes. The hydrocarbon classification is shown to have performed very well in identifying expected signatures near and downwind-of oil and gas facilities with active permits, which showcases this method's usefulness for future regional hydrocarbon source-apportionment analyses.

Remote Sensing Application to Land Use Classification in a Rapidly Changing Agricultural/Urban Area: City of Virginia Beach, Virginia. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Odenyo, V. A. O.

1975-01-01

Remote sensing data on computer-compatible tapes of LANDSAT 1 multispectral scanner imager were analyzed to generate a land use map of the City of Virginia Beach. All four bands were used in both the supervised and unsupervised approaches with the LAYSYS software system. Color IR imagery of a U-2 flight of the same area was also digitized and two sample areas were analyzed via the unsupervised approach. The relationships between the mapped land use and the soils of the area were investigated. A land use land cover map at a scale of 1:24,000 was obtained from the supervised analysis of LANDSAT 1 data. It was concluded that machine analysis of remote sensing data to produce land use maps was feasible; that the LAYSYS software system was usable for this purpose; and that the machine analysis was capable of extracting detailed information from the relatively small scale LANDSAT data in a much shorter time without compromising accuracy.

Naive scoring of human sleep based on a hidden Markov model of the electroencephalogram.

PubMed

Yaghouby, Farid; Modur, Pradeep; Sunderam, Sridhar

2014-01-01

Clinical sleep scoring involves tedious visual review of overnight polysomnograms by a human expert. Many attempts have been made to automate the process by training computer algorithms such as support vector machines and hidden Markov models (HMMs) to replicate human scoring. Such supervised classifiers are typically trained on scored data and then validated on scored out-of-sample data. Here we describe a methodology based on HMMs for scoring an overnight sleep recording without the benefit of a trained initial model. The number of states in the data is not known a priori and is optimized using a Bayes information criterion. When tested on a 22-subject database, this unsupervised classifier agreed well with human scores (mean of Cohen's kappa > 0.7). The HMM also outperformed other unsupervised classifiers (Gaussian mixture models, k-means, and linkage trees), that are capable of naive classification but do not model dynamics, by a significant margin (p < 0.05).

Self-Organizing Hidden Markov Model Map (SOHMMM).

PubMed

Ferles, Christos; Stafylopatis, Andreas

2013-12-01

A hybrid approach combining the Self-Organizing Map (SOM) and the Hidden Markov Model (HMM) is presented. The Self-Organizing Hidden Markov Model Map (SOHMMM) establishes a cross-section between the theoretic foundations and algorithmic realizations of its constituents. The respective architectures and learning methodologies are fused in an attempt to meet the increasing requirements imposed by the properties of deoxyribonucleic acid (DNA), ribonucleic acid (RNA), and protein chain molecules. The fusion and synergy of the SOM unsupervised training and the HMM dynamic programming algorithms bring forth a novel on-line gradient descent unsupervised learning algorithm, which is fully integrated into the SOHMMM. Since the SOHMMM carries out probabilistic sequence analysis with little or no prior knowledge, it can have a variety of applications in clustering, dimensionality reduction and visualization of large-scale sequence spaces, and also, in sequence discrimination, search and classification. Two series of experiments based on artificial sequence data and splice junction gene sequences demonstrate the SOHMMM's characteristics and capabilities. Copyright © 2013 Elsevier Ltd. All rights reserved.

Examining change detection approaches for tropical mangrove monitoring

USGS Publications Warehouse

Myint, Soe W.; Franklin, Janet; Buenemann, Michaela; Kim, Won; Giri, Chandra

2014-01-01

This study evaluated the effectiveness of different band combinations and classifiers (unsupervised, supervised, object-oriented nearest neighbor, and object-oriented decision rule) for quantifying mangrove forest change using multitemporal Landsat data. A discriminant analysis using spectra of different vegetation types determined that bands 2 (0.52 to 0.6 μm), 5 (1.55 to 1.75 μm), and 7 (2.08 to 2.35 μm) were the most effective bands for differentiating mangrove forests from surrounding land cover types. A ranking of thirty-six change maps, produced by comparing the classification accuracy of twelve change detection approaches, was used. The object-based Nearest Neighbor classifier produced the highest mean overall accuracy (84 percent) regardless of band combinations. The automated decision rule-based approach (mean overall accuracy of 88 percent) as well as a composite of bands 2, 5, and 7 used with the unsupervised classifier and the same composite or all band difference with the object-oriented Nearest Neighbor classifier were the most effective approaches.

The Convallis Rule for Unsupervised Learning in Cortical Networks

PubMed Central

Yger, Pierre; Harris, Kenneth D.

2013-01-01

The phenomenology and cellular mechanisms of cortical synaptic plasticity are becoming known in increasing detail, but the computational principles by which cortical plasticity enables the development of sensory representations are unclear. Here we describe a framework for cortical synaptic plasticity termed the “Convallis rule”, mathematically derived from a principle of unsupervised learning via constrained optimization. Implementation of the rule caused a recurrent cortex-like network of simulated spiking neurons to develop rate representations of real-world speech stimuli, enabling classification by a downstream linear decoder. Applied to spike patterns used in in vitro plasticity experiments, the rule reproduced multiple results including and beyond STDP. However STDP alone produced poorer learning performance. The mathematical form of the rule is consistent with a dual coincidence detector mechanism that has been suggested by experiments in several synaptic classes of juvenile neocortex. Based on this confluence of normative, phenomenological, and mechanistic evidence, we suggest that the rule may approximate a fundamental computational principle of the neocortex. PMID:24204224

Down-Regulation of Olfactory Receptors in Response to Traumatic Brain Injury Promotes Risk for Alzheimer’s Disease

DTIC Science & Technology

2013-10-01

correct group assignment of samples in unsupervised hierarchical clustering by the Unweighted Pair-Group Method using Arithmetic averages ( UPGMA ) based on...centering of log2 transformed MAS5.0 signal values; probe set clustering was performed by the UPGMA method using Cosine correlation as the similarity met...A) The 108 differentially-regulated genes identified were subjected to unsupervised hierarchical clustering analysis using the UPGMA algorithm with

Retinal vascular segmentation using superpixel-based line operator and its application to vascular topology estimation.

PubMed

Na, Tong; Xie, Jianyang; Zhao, Yitian; Zhao, Yifan; Liu, Yue; Wang, Yongtian; Liu, Jiang

2018-05-09

Automatic methods of analyzing of retinal vascular networks, such as retinal blood vessel detection, vascular network topology estimation, and arteries/veins classification are of great assistance to the ophthalmologist in terms of diagnosis and treatment of a wide spectrum of diseases. We propose a new framework for precisely segmenting retinal vasculatures, constructing retinal vascular network topology, and separating the arteries and veins. A nonlocal total variation inspired Retinex model is employed to remove the image intensity inhomogeneities and relatively poor contrast. For better generalizability and segmentation performance, a superpixel-based line operator is proposed as to distinguish between lines and the edges, thus allowing more tolerance in the position of the respective contours. The concept of dominant sets clustering is adopted to estimate retinal vessel topology and classify the vessel network into arteries and veins. The proposed segmentation method yields competitive results on three public data sets (STARE, DRIVE, and IOSTAR), and it has superior performance when compared with unsupervised segmentation methods, with accuracy of 0.954, 0.957, and 0.964, respectively. The topology estimation approach has been applied to five public databases (DRIVE,STARE, INSPIRE, IOSTAR, and VICAVR) and achieved high accuracy of 0.830, 0.910, 0.915, 0.928, and 0.889, respectively. The accuracies of arteries/veins classification based on the estimated vascular topology on three public databases (INSPIRE, DRIVE and VICAVR) are 0.90.9, 0.910, and 0.907, respectively. The experimental results show that the proposed framework has effectively addressed crossover problem, a bottleneck issue in segmentation and vascular topology reconstruction. The vascular topology information significantly improves the accuracy on arteries/veins classification. © 2018 American Association of Physicists in Medicine.

Robust location and spread measures for nonparametric probability density function estimation.

PubMed

López-Rubio, Ezequiel

2009-10-01

Robustness against outliers is a desirable property of any unsupervised learning scheme. In particular, probability density estimators benefit from incorporating this feature. A possible strategy to achieve this goal is to substitute the sample mean and the sample covariance matrix by more robust location and spread estimators. Here we use the L1-median to develop a nonparametric probability density function (PDF) estimator. We prove its most relevant properties, and we show its performance in density estimation and classification applications.

Galaxy morphology - An unsupervised machine learning approach

NASA Astrophysics Data System (ADS)

Schutter, A.; Shamir, L.

2015-09-01

Structural properties poses valuable information about the formation and evolution of galaxies, and are important for understanding the past, present, and future universe. Here we use unsupervised machine learning methodology to analyze a network of similarities between galaxy morphological types, and automatically deduce a morphological sequence of galaxies. Application of the method to the EFIGI catalog show that the morphological scheme produced by the algorithm is largely in agreement with the De Vaucouleurs system, demonstrating the ability of computer vision and machine learning methods to automatically profile galaxy morphological sequences. The unsupervised analysis method is based on comprehensive computer vision techniques that compute the visual similarities between the different morphological types. Rather than relying on human cognition, the proposed system deduces the similarities between sets of galaxy images in an automatic manner, and is therefore not limited by the number of galaxies being analyzed. The source code of the method is publicly available, and the protocol of the experiment is included in the paper so that the experiment can be replicated, and the method can be used to analyze user-defined datasets of galaxy images.

Early pest detection in soy plantations from hyperspectral measurements: a case study for caterpillar detection

NASA Astrophysics Data System (ADS)

Tailanián, Matías; Castiglioni, Enrique; Musé, Pablo; Fernández Flores, Germán.; Lema, Gabriel; Mastrángelo, Pedro; Almansa, Mónica; Fernández Liñares, Ignacio; Fernández Liñares, Germán.

2015-10-01

Soybean producers suffer from caterpillar damage in many areas of the world. Estimated average economic losses are annually 500 million USD in Brazil, Argentina, Paraguay and Uruguay. Designing efficient pest control management using selective and targeted pesticide applications is extremely important both from economic and environmental perspectives. With that in mind, we conducted a research program during the 2013-2014 and 2014-2015 planting seasons in a 4,000 ha soybean farm, seeking to achieve early pest detection. Nowadays pest presence is evaluated using manual, labor-intensive counting methods based on sampling strategies which are time consuming and imprecise. The experiment was conducted as follows. Using manual counting methods as ground-truth, a spectrometer capturing reflectance from 400 to 1100 nm was used to measure the reflectance of soy plants. A first conclusion, resulting from measuring the spectral response at leaves level, showed that stress was a property of plants since different leaves with different levels of damage yielded the same spectral response. Then, to assess the applicability of unsupervised classification of plants as healthy, biotic-stressed or abiotic-stressed, feature extraction and selection from leaves spectral signatures, combined with a Supported Vector Machine classifier was designed. Optimization of SVM parameters using grid search with cross-validation, along with classification evaluation by ten-folds cross-validation showed a correct classification rate of 95%, consistently on both seasons. Controlled experiments using cages with different numbers of caterpillars--including caterpillar-free plants--were also conducted to evaluate consistency in trends of the spectral response as well as the extracted features.

The impact of initialization procedures on unsupervised unmixing of hyperspectral imagery using the constrained positive matrix factorization

NASA Astrophysics Data System (ADS)

Masalmah, Yahya M.; Vélez-Reyes, Miguel

2007-04-01

The authors proposed in previous papers the use of the constrained Positive Matrix Factorization (cPMF) to perform unsupervised unmixing of hyperspectral imagery. Two iterative algorithms were proposed to compute the cPMF based on the Gauss-Seidel and penalty approaches to solve optimization problems. Results presented in previous papers have shown the potential of the proposed method to perform unsupervised unmixing in HYPERION and AVIRIS imagery. The performance of iterative methods is highly dependent on the initialization scheme. Good initialization schemes can improve convergence speed, whether or not a global minimum is found, and whether or not spectra with physical relevance are retrieved as endmembers. In this paper, different initializations using random selection, longest norm pixels, and standard endmembers selection routines are studied and compared using simulated and real data.

Spectroscopic classification of icy satellites of Saturn II: Identification of terrain units on Rhea

NASA Astrophysics Data System (ADS)

Scipioni, F.; Tosi, F.; Stephan, K.; Filacchione, G.; Ciarniello, M.; Capaccioni, F.; Cerroni, P.

2014-05-01

Rhea is the second largest icy satellites of Saturn and it is mainly composed of water ice. Its surface is characterized by a leading hemisphere slightly brighter than the trailing side. The main goal of this work is to identify homogeneous compositional units on Rhea by applying the Spectral Angle Mapper (SAM) classification technique to Rhea’s hyperspectral images acquired by the Visual and Infrared Mapping Spectrometer (VIMS) onboard the Cassini Orbiter in the infrared range (0.88-5.12 μm). The first step of the classification is dedicated to the identification of Rhea’s spectral endmembers by applying the k-means unsupervised clustering technique to four hyperspectral images representative of a limited portion of the surface, imaged at relatively high spatial resolution. We then identified eight spectral endmembers, corresponding to as many terrain units, which mostly distinguish for water ice abundance and ice grain size. In the second step, endmembers are used as reference spectra in SAM classification method to achieve a comprehensive classification of the entire surface. From our analysis of the infrared spectra returned by VIMS, it clearly emerges that Rhea’ surface units shows differences in terms of water ice bands depths, average ice grain size, and concentration of contaminants, particularly CO2 and hydrocarbons. The spectral units that classify optically dark terrains are those showing suppressed water ice bands, a finer ice grain size and a higher concentration of carbon dioxide. Conversely, spectral units labeling brighter regions have deeper water ice absorption bands, higher albedo and a smaller concentration of contaminants. All these variations reflect surface’s morphological and geological structures. Finally, we performed a comparison between Rhea and Dione, to highlight different magnitudes of space weathering effects in the icy satellites as a function of the distance from Saturn.

On the Design of a CADS for Shoulder Pain Pathology

NASA Astrophysics Data System (ADS)

de Ipiña, K. López; Hernández, M. C.; Martínez, E.; Vaquero, C.

A musculoskeletal disorder is a condition of the musculoskeletal system, which consists in part of it being injured continuously over time. Shoulder disorders are one of the most common musculoskeletal cases attended in primary health care services. Shoulder disorders cause pain and limit the ability to perform many routine activities, affecting about 15-25 % of the general population. Several clinical tests have been described to aid diagnosis of shoulder disorders. However, the current literature acknowledges a lack of concordance in clinical assessment, even among musculoskeletal specialists. We are working on the design of a Computer-Aided Decision Support (CADS) system for Shoulder Pain Pathology. The paper presents the results of our efforts to build a CADS system testing several classical classification paradigms, feature reduction methods (PCA) and K-means unsupervised clustering. The small database size imposes the use of robust covariance matrix estimation methods to improve the system performance. Finally, the system was evaluated by a medical specialist.

Unsupervised iterative detection of land mines in highly cluttered environments.

PubMed

Batman, Sinan; Goutsias, John

2003-01-01

An unsupervised iterative scheme is proposed for land mine detection in heavily cluttered scenes. This scheme is based on iterating hybrid multispectral filters that consist of a decorrelating linear transform coupled with a nonlinear morphological detector. Detections extracted from the first pass are used to improve results in subsequent iterations. The procedure stops after a predetermined number of iterations. The proposed scheme addresses several weaknesses associated with previous adaptations of morphological approaches to land mine detection. Improvement in detection performance, robustness with respect to clutter inhomogeneities, a completely unsupervised operation, and computational efficiency are the main highlights of the method. Experimental results reveal excellent performance.

Spectrally based mapping of riverbed composition

USGS Publications Warehouse

Legleiter, Carl; Stegman, Tobin K.; Overstreet, Brandon T.

2016-01-01

Remote sensing methods provide an efficient means of characterizing fluvial systems. This study evaluated the potential to map riverbed composition based on in situ and/or remote measurements of reflectance. Field spectra and substrate photos from the Snake River, Wyoming, USA, were used to identify different sediment facies and degrees of algal development and to quantify their optical characteristics. We hypothesized that accounting for the effects of depth and water column attenuation to isolate the reflectance of the streambed would enhance distinctions among bottom types and facilitate substrate classification. A bottom reflectance retrieval algorithm adapted from coastal research yielded realistic spectra for the 450 to 700 nm range; but bottom reflectance-based substrate classifications, generated using a random forest technique, were no more accurate than classifications derived from above-water field spectra. Additional hypothesis testing indicated that a combination of reflectance magnitude (brightness) and indices of spectral shape provided the most accurate riverbed classifications. Convolving field spectra to the response functions of a multispectral satellite and a hyperspectral imaging system did not reduce classification accuracies, implying that high spectral resolution was not essential. Supervised classifications of algal density produced from hyperspectral data and an inferred bottom reflectance image were not highly accurate, but unsupervised classification of the bottom reflectance image revealed distinct spectrally based clusters, suggesting that such an image could provide additional river information. We attribute the failure of bottom reflectance retrieval to yield more reliable substrate maps to a latent correlation between depth and bottom type. Accounting for the effects of depth might have eliminated a key distinction among substrates and thus reduced discriminatory power. Although further, more systematic study across a broader range of fluvial environments is needed to substantiate our initial results, this case study suggests that bed composition in shallow, clear-flowing rivers potentially could be mapped remotely.

Remote sensing analysis of vegetation at the San Carlos Apache Reservation, Arizona and surrounding area

USGS Publications Warehouse

Norman, Laura M.; Middleton, Barry R.; Wilson, Natalie R.

2018-01-01

Mapping of vegetation types is of great importance to the San Carlos Apache Tribe and their management of forestry and fire fuels. Various remote sensing techniques were applied to classify multitemporal Landsat 8 satellite data, vegetation index, and digital elevation model data. A multitiered unsupervised classification generated over 900 classes that were then recoded to one of the 16 generalized vegetation/land cover classes using the Southwest Regional Gap Analysis Project (SWReGAP) map as a guide. A supervised classification was also run using field data collected in the SWReGAP project and our field campaign. Field data were gathered and accuracy assessments were generated to compare outputs. Our hypothesis was that a resulting map would update and potentially improve upon the vegetation/land cover class distributions of the older SWReGAP map over the 24,000  km2 study area. The estimated overall accuracies ranged between 43% and 75%, depending on which method and field dataset were used. The findings demonstrate the complexity of vegetation mapping, the importance of recent, high-quality-field data, and the potential for misleading results when insufficient field data are collected.

Hyperspectral Imaging Using Flexible Endoscopy for Laryngeal Cancer Detection

PubMed Central

Regeling, Bianca; Thies, Boris; Gerstner, Andreas O. H.; Westermann, Stephan; Müller, Nina A.; Bendix, Jörg; Laffers, Wiebke

2016-01-01

Hyperspectral imaging (HSI) is increasingly gaining acceptance in the medical field. Up until now, HSI has been used in conjunction with rigid endoscopy to detect cancer in vivo. The logical next step is to pair HSI with flexible endoscopy, since it improves access to hard-to-reach areas. While the flexible endoscope’s fiber optic cables provide the advantage of flexibility, they also introduce an interfering honeycomb-like pattern onto images. Due to the substantial impact this pattern has on locating cancerous tissue, it must be removed before the HS data can be further processed. Thereby, the loss of information is to minimize avoiding the suppression of small-area variations of pixel values. We have developed a system that uses flexible endoscopy to record HS cubes of the larynx and designed a special filtering technique to remove the honeycomb-like pattern with minimal loss of information. We have confirmed its feasibility by comparing it to conventional filtering techniques using an objective metric and by applying unsupervised and supervised classifications to raw and pre-processed HS cubes. Compared to conventional techniques, our method successfully removes the honeycomb-like pattern and considerably improves classification performance, while preserving image details. PMID:27529255

A novel framework for feature extraction in multi-sensor action potential sorting.

PubMed

Wu, Shun-Chi; Swindlehurst, A Lee; Nenadic, Zoran

2015-09-30

Extracellular recordings of multi-unit neural activity have become indispensable in neuroscience research. The analysis of the recordings begins with the detection of the action potentials (APs), followed by a classification step where each AP is associated with a given neural source. A feature extraction step is required prior to classification in order to reduce the dimensionality of the data and the impact of noise, allowing source clustering algorithms to work more efficiently. In this paper, we propose a novel framework for multi-sensor AP feature extraction based on the so-called Matched Subspace Detector (MSD), which is shown to be a natural generalization of standard single-sensor algorithms. Clustering using both simulated data and real AP recordings taken in the locust antennal lobe demonstrates that the proposed approach yields features that are discriminatory and lead to promising results. Unlike existing methods, the proposed algorithm finds joint spatio-temporal feature vectors that match the dominant subspace observed in the two-dimensional data without needs for a forward propagation model and AP templates. The proposed MSD approach provides more discriminatory features for unsupervised AP sorting applications. Copyright © 2015 Elsevier B.V. All rights reserved.

Hyperspectral Imaging Using Flexible Endoscopy for Laryngeal Cancer Detection.

PubMed

Regeling, Bianca; Thies, Boris; Gerstner, Andreas O H; Westermann, Stephan; Müller, Nina A; Bendix, Jörg; Laffers, Wiebke

2016-08-13

Hyperspectral imaging (HSI) is increasingly gaining acceptance in the medical field. Up until now, HSI has been used in conjunction with rigid endoscopy to detect cancer in vivo. The logical next step is to pair HSI with flexible endoscopy, since it improves access to hard-to-reach areas. While the flexible endoscope's fiber optic cables provide the advantage of flexibility, they also introduce an interfering honeycomb-like pattern onto images. Due to the substantial impact this pattern has on locating cancerous tissue, it must be removed before the HS data can be further processed. Thereby, the loss of information is to minimize avoiding the suppression of small-area variations of pixel values. We have developed a system that uses flexible endoscopy to record HS cubes of the larynx and designed a special filtering technique to remove the honeycomb-like pattern with minimal loss of information. We have confirmed its feasibility by comparing it to conventional filtering techniques using an objective metric and by applying unsupervised and supervised classifications to raw and pre-processed HS cubes. Compared to conventional techniques, our method successfully removes the honeycomb-like pattern and considerably improves classification performance, while preserving image details.

pyAudioAnalysis: An Open-Source Python Library for Audio Signal Analysis.

PubMed

Giannakopoulos, Theodoros

2015-01-01

Audio information plays a rather important role in the increasing digital content that is available today, resulting in a need for methodologies that automatically analyze such content: audio event recognition for home automations and surveillance systems, speech recognition, music information retrieval, multimodal analysis (e.g. audio-visual analysis of online videos for content-based recommendation), etc. This paper presents pyAudioAnalysis, an open-source Python library that provides a wide range of audio analysis procedures including: feature extraction, classification of audio signals, supervised and unsupervised segmentation and content visualization. pyAudioAnalysis is licensed under the Apache License and is available at GitHub (https://github.com/tyiannak/pyAudioAnalysis/). Here we present the theoretical background behind the wide range of the implemented methodologies, along with evaluation metrics for some of the methods. pyAudioAnalysis has been already used in several audio analysis research applications: smart-home functionalities through audio event detection, speech emotion recognition, depression classification based on audio-visual features, music segmentation, multimodal content-based movie recommendation and health applications (e.g. monitoring eating habits). The feedback provided from all these particular audio applications has led to practical enhancement of the library.

pyAudioAnalysis: An Open-Source Python Library for Audio Signal Analysis

PubMed Central

Giannakopoulos, Theodoros

2015-01-01

Audio information plays a rather important role in the increasing digital content that is available today, resulting in a need for methodologies that automatically analyze such content: audio event recognition for home automations and surveillance systems, speech recognition, music information retrieval, multimodal analysis (e.g. audio-visual analysis of online videos for content-based recommendation), etc. This paper presents pyAudioAnalysis, an open-source Python library that provides a wide range of audio analysis procedures including: feature extraction, classification of audio signals, supervised and unsupervised segmentation and content visualization. pyAudioAnalysis is licensed under the Apache License and is available at GitHub (https://github.com/tyiannak/pyAudioAnalysis/). Here we present the theoretical background behind the wide range of the implemented methodologies, along with evaluation metrics for some of the methods. pyAudioAnalysis has been already used in several audio analysis research applications: smart-home functionalities through audio event detection, speech emotion recognition, depression classification based on audio-visual features, music segmentation, multimodal content-based movie recommendation and health applications (e.g. monitoring eating habits). The feedback provided from all these particular audio applications has led to practical enhancement of the library. PMID:26656189

Cases of Coastal Zone Change and Land Use/Land Cover Change: a learning module that goes beyond the "how" of doing image processing and change detection to asking the "why" about what are the "driving forces" of global change.

NASA Astrophysics Data System (ADS)

Ford, R. E.

2006-12-01

In 2006 the Loma Linda University ESSE21 Mesoamerican Project (Earth System Science Education for the 21st Century) along with partners such as the University of Redlands and California State University, Pomona, produced an online learning module that is designed to help students learn critical remote sensing skills-- specifically: ecosystem characterization, i.e. doing a supervised or unsupervised classification of satellite imagery in a tropical coastal environment. And, it would teach how to measure land use / land cover change (LULC) over time and then encourage students to use that data to assess the Human Dimensions of Global Change (HDGC). Specific objectives include: 1. Learn where to find remote sensing data and practice downloading, pre-processing, and "cleaning" the data for image analysis. 2. Use Leica-Geosystems ERDAS Imagine or IDRISI Kilimanjaro to analyze and display the data. 3. Do an unsupervised classification of a LANDSAT image of a protected area in Honduras, i.e. Cuero y Salado, Pico Bonito, or Isla del Tigre. 4. Virtually participate in a ground-validation exercise that would allow one to re-classify the image into a supervised classification using the FAO Global Land Cover Network (GLCN) classification system. 5. Learn more about each protected area's landscape, history, livelihood patterns and "sustainability" issues via virtual online tours that provide ground and space photos of different sites. This will help students in identifying potential "training sites" for doing a supervised classification. 6. Study other global, US, Canadian, and European land use/land cover classification systems and compare their advantages and disadvantages over the FAO/GLCN system. 7. Learn to appreciate the advantages and disadvantages of existing LULC classification schemes and adapt them to local-level user needs. 8. Carry out a change detection exercise that shows how land use and/or land cover has changed over time for the protected area of your choice. The presenter will demonstrate the module, assess the collaborative process which created it, and describe how it has been used so far by users in the US as well as in Honduras and elsewhere via a series joint workshops held in Mesoamerica. Suggestions for improvement will be requested. See the module and related content resources at: http://resweb.llu.edu/rford/ESSE21/LUCCModule/

Spectral embedding finds meaningful (relevant) structure in image and microarray data

PubMed Central

Higgs, Brandon W; Weller, Jennifer; Solka, Jeffrey L

2006-01-01

Background Accurate methods for extraction of meaningful patterns in high dimensional data have become increasingly important with the recent generation of data types containing measurements across thousands of variables. Principal components analysis (PCA) is a linear dimensionality reduction (DR) method that is unsupervised in that it relies only on the data; projections are calculated in Euclidean or a similar linear space and do not use tuning parameters for optimizing the fit to the data. However, relationships within sets of nonlinear data types, such as biological networks or images, are frequently mis-rendered into a low dimensional space by linear methods. Nonlinear methods, in contrast, attempt to model important aspects of the underlying data structure, often requiring parameter(s) fitting to the data type of interest. In many cases, the optimal parameter values vary when different classification algorithms are applied on the same rendered subspace, making the results of such methods highly dependent upon the type of classifier implemented. Results We present the results of applying the spectral method of Lafon, a nonlinear DR method based on the weighted graph Laplacian, that minimizes the requirements for such parameter optimization for two biological data types. We demonstrate that it is successful in determining implicit ordering of brain slice image data and in classifying separate species in microarray data, as compared to two conventional linear methods and three nonlinear methods (one of which is an alternative spectral method). This spectral implementation is shown to provide more meaningful information, by preserving important relationships, than the methods of DR presented for comparison. Tuning parameter fitting is simple and is a general, rather than data type or experiment specific approach, for the two datasets analyzed here. Tuning parameter optimization is minimized in the DR step to each subsequent classification method, enabling the possibility of valid cross-experiment comparisons. Conclusion Results from the spectral method presented here exhibit the desirable properties of preserving meaningful nonlinear relationships in lower dimensional space and requiring minimal parameter fitting, providing a useful algorithm for purposes of visualization and classification across diverse datasets, a common challenge in systems biology. PMID:16483359

Use of Binary Partition Tree and energy minimization for object-based classification of urban land cover

NASA Astrophysics Data System (ADS)

Li, Mengmeng; Bijker, Wietske; Stein, Alfred

2015-04-01

Two main challenges are faced when classifying urban land cover from very high resolution satellite images: obtaining an optimal image segmentation and distinguishing buildings from other man-made objects. For optimal segmentation, this work proposes a hierarchical representation of an image by means of a Binary Partition Tree (BPT) and an unsupervised evaluation of image segmentations by energy minimization. For building extraction, we apply fuzzy sets to create a fuzzy landscape of shadows which in turn involves a two-step procedure. The first step is a preliminarily image classification at a fine segmentation level to generate vegetation and shadow information. The second step models the directional relationship between building and shadow objects to extract building information at the optimal segmentation level. We conducted the experiments on two datasets of Pléiades images from Wuhan City, China. To demonstrate its performance, the proposed classification is compared at the optimal segmentation level with Maximum Likelihood Classification and Support Vector Machine classification. The results show that the proposed classification produced the highest overall accuracies and kappa coefficients, and the smallest over-classification and under-classification geometric errors. We conclude first that integrating BPT with energy minimization offers an effective means for image segmentation. Second, we conclude that the directional relationship between building and shadow objects represented by a fuzzy landscape is important for building extraction.

Accuracy of latent-variable estimation in Bayesian semi-supervised learning.

PubMed

Yamazaki, Keisuke

2015-09-01

Hierarchical probabilistic models, such as Gaussian mixture models, are widely used for unsupervised learning tasks. These models consist of observable and latent variables, which represent the observable data and the underlying data-generation process, respectively. Unsupervised learning tasks, such as cluster analysis, are regarded as estimations of latent variables based on the observable ones. The estimation of latent variables in semi-supervised learning, where some labels are observed, will be more precise than that in unsupervised, and one of the concerns is to clarify the effect of the labeled data. However, there has not been sufficient theoretical analysis of the accuracy of the estimation of latent variables. In a previous study, a distribution-based error function was formulated, and its asymptotic form was calculated for unsupervised learning with generative models. It has been shown that, for the estimation of latent variables, the Bayes method is more accurate than the maximum-likelihood method. The present paper reveals the asymptotic forms of the error function in Bayesian semi-supervised learning for both discriminative and generative models. The results show that the generative model, which uses all of the given data, performs better when the model is well specified. Copyright © 2015 Elsevier Ltd. All rights reserved.

Segmentation of fluorescence microscopy cell images using unsupervised mining.

PubMed

Du, Xian; Dua, Sumeet

2010-05-28

The accurate measurement of cell and nuclei contours are critical for the sensitive and specific detection of changes in normal cells in several medical informatics disciplines. Within microscopy, this task is facilitated using fluorescence cell stains, and segmentation is often the first step in such approaches. Due to the complex nature of cell issues and problems inherent to microscopy, unsupervised mining approaches of clustering can be incorporated in the segmentation of cells. In this study, we have developed and evaluated the performance of multiple unsupervised data mining techniques in cell image segmentation. We adapt four distinctive, yet complementary, methods for unsupervised learning, including those based on k-means clustering, EM, Otsu's threshold, and GMAC. Validation measures are defined, and the performance of the techniques is evaluated both quantitatively and qualitatively using synthetic and recently published real data. Experimental results demonstrate that k-means, Otsu's threshold, and GMAC perform similarly, and have more precise segmentation results than EM. We report that EM has higher recall values and lower precision results from under-segmentation due to its Gaussian model assumption. We also demonstrate that these methods need spatial information to segment complex real cell images with a high degree of efficacy, as expected in many medical informatics applications.

Clinical and Biological Relevance of Genomic Heterogeneity in Chronic Lymphocytic Leukemia

PubMed Central

Friedman, Daphne R.; Lucas, Joseph E.; Weinberg, J. Brice

2013-01-01

Background Chronic lymphocytic leukemia (CLL) is typically regarded as an indolent B-cell malignancy. However, there is wide variability with regards to need for therapy, time to progressive disease, and treatment response. This clinical variability is due, in part, to biological heterogeneity between individual patients’ leukemias. While much has been learned about this biological variation using genomic approaches, it is unclear whether such efforts have sufficiently evaluated biological and clinical heterogeneity in CLL. Methods To study the extent of genomic variability in CLL and the biological and clinical attributes of genomic classification in CLL, we evaluated 893 unique CLL samples from fifteen publicly available gene expression profiling datasets. We used unsupervised approaches to divide the data into subgroups, evaluated the biological pathways and genetic aberrations that were associated with the subgroups, and compared prognostic and clinical outcome data between the subgroups. Results Using an unsupervised approach, we determined that approximately 600 CLL samples are needed to define the spectrum of diversity in CLL genomic expression. We identified seven genomically-defined CLL subgroups that have distinct biological properties, are associated with specific chromosomal deletions and amplifications, and have marked differences in molecular prognostic markers and clinical outcomes. Conclusions Our results indicate that investigations focusing on small numbers of patient samples likely provide a biased outlook on CLL biology. These findings may have important implications in identifying patients who should be treated with specific targeted therapies, which could have efficacy against CLL cells that rely on specific biological pathways. PMID:23468975

Using hyperspectral remote sensing for land cover classification

NASA Astrophysics Data System (ADS)

Zhang, Wendy W.; Sriharan, Shobha

2005-01-01

This project used hyperspectral data set to classify land cover using remote sensing techniques. Many different earth-sensing satellites, with diverse sensors mounted on sophisticated platforms, are currently in earth orbit. These sensors are designed to cover a wide range of the electromagnetic spectrum and are generating enormous amounts of data that must be processed, stored, and made available to the user community. The Airborne Visible-Infrared Imaging Spectrometer (AVIRIS) collects data in 224 bands that are approximately 9.6 nm wide in contiguous bands between 0.40 and 2.45 mm. Hyperspectral sensors acquire images in many, very narrow, contiguous spectral bands throughout the visible, near-IR, and thermal IR portions of the spectrum. The unsupervised image classification procedure automatically categorizes the pixels in an image into land cover classes or themes. Experiments on using hyperspectral remote sensing for land cover classification were conducted during the 2003 and 2004 NASA Summer Faculty Fellowship Program at Stennis Space Center. Research Systems Inc.'s (RSI) ENVI software package was used in this application framework. In this application, emphasis was placed on: (1) Spectrally oriented classification procedures for land cover mapping, particularly, the supervised surface classification using AVIRIS data; and (2) Identifying data endmembers.

Cloud cover typing from environmental satellite imagery. Discriminating cloud structure with Fast Fourier Transforms (FFT)

NASA Technical Reports Server (NTRS)

Logan, T. L.; Huning, J. R.; Glackin, D. L.

1983-01-01

The use of two dimensional Fast Fourier Transforms (FFTs) subjected to pattern recognition technology for the identification and classification of low altitude stratus cloud structure from Geostationary Operational Environmental Satellite (GOES) imagery was examined. The development of a scene independent pattern recognition methodology, unconstrained by conventional cloud morphological classifications was emphasized. A technique for extracting cloud shape, direction, and size attributes from GOES visual imagery was developed. These attributes were combined with two statistical attributes (cloud mean brightness, cloud standard deviation), and interrogated using unsupervised clustering amd maximum likelihood classification techniques. Results indicate that: (1) the key cloud discrimination attributes are mean brightness, direction, shape, and minimum size; (2) cloud structure can be differentiated at given pixel scales; (3) cloud type may be identifiable at coarser scales; (4) there are positive indications of scene independence which would permit development of a cloud signature bank; (5) edge enhancement of GOES imagery does not appreciably improve cloud classification over the use of raw data; and (6) the GOES imagery must be apodized before generation of FFTs.

Modeling EEG Waveforms with Semi-Supervised Deep Belief Nets: Fast Classification and Anomaly Measurement

PubMed Central

Wulsin, D. F.; Gupta, J. R.; Mani, R.; Blanco, J. A.; Litt, B.

2011-01-01

Clinical electroencephalography (EEG) records vast amounts of human complex data yet is still reviewed primarily by human readers. Deep Belief Nets (DBNs) are a relatively new type of multi-layer neural network commonly tested on two-dimensional image data, but are rarely applied to times-series data such as EEG. We apply DBNs in a semi-supervised paradigm to model EEG waveforms for classification and anomaly detection. DBN performance was comparable to standard classifiers on our EEG dataset, and classification time was found to be 1.7 to 103.7 times faster than the other high-performing classifiers. We demonstrate how the unsupervised step of DBN learning produces an autoencoder that can naturally be used in anomaly measurement. We compare the use of raw, unprocessed data—a rarity in automated physiological waveform analysis—to hand-chosen features and find that raw data produces comparable classification and better anomaly measurement performance. These results indicate that DBNs and raw data inputs may be more effective for online automated EEG waveform recognition than other common techniques. PMID:21525569

Performance comparison of machine learning algorithms and number of independent components used in fMRI decoding of belief vs. disbelief.

PubMed

Douglas, P K; Harris, Sam; Yuille, Alan; Cohen, Mark S

2011-05-15

Machine learning (ML) has become a popular tool for mining functional neuroimaging data, and there are now hopes of performing such analyses efficiently in real-time. Towards this goal, we compared accuracy of six different ML algorithms applied to neuroimaging data of persons engaged in a bivariate task, asserting their belief or disbelief of a variety of propositional statements. We performed unsupervised dimension reduction and automated feature extraction using independent component (IC) analysis and extracted IC time courses. Optimization of classification hyperparameters across each classifier occurred prior to assessment. Maximum accuracy was achieved at 92% for Random Forest, followed by 91% for AdaBoost, 89% for Naïve Bayes, 87% for a J48 decision tree, 86% for K*, and 84% for support vector machine. For real-time decoding applications, finding a parsimonious subset of diagnostic ICs might be useful. We used a forward search technique to sequentially add ranked ICs to the feature subspace. For the current data set, we determined that approximately six ICs represented a meaningful basis set for classification. We then projected these six IC spatial maps forward onto a later scanning session within subject. We then applied the optimized ML algorithms to these new data instances, and found that classification accuracy results were reproducible. Additionally, we compared our classification method to our previously published general linear model results on this same data set. The highest ranked IC spatial maps show similarity to brain regions associated with contrasts for belief > disbelief, and disbelief < belief. Copyright © 2010 Elsevier Inc. All rights reserved.

On Quantitative Biomarkers of VNS Therapy Using EEG and ECG Signals.

PubMed

Ravan, Maryam; Sabesan, Shivkumar; D'Cruz, O'Neill

2017-02-01

The goal of this work is to objectively evaluate the effectiveness of neuromodulation therapies, specifically, Vagus nerve stimulation (VNS) in reducing the severity of seizures in patients with medically refractory epilepsy. Using novel quantitative features obtained from combination of electroencephalographic (EEG) and electrocardiographic (ECG) signals around seizure events in 16 patients who underwent implantation of closed-loop VNS therapy system, namely AspireSR, we evaluated if automated delivery of VNS at the time of seizure onset reduces the severity of seizures by reducing EEG spatial synchronization as well as the duration and magnitude of heart rate increase. Unsupervised classification was subsequently applied to test the discriminative ability and validity of these features to measure responsiveness to VNS therapy. Results of application of this methodology to compare 105 pre-VNS treatment and 107 post-VNS treatment seizures revealed that seizures that were acutely stimulated using VNS had a reduced ictal spread as well as reduced impact on cardiovascular function compared to the ones that occurred prior to any treatment. Furthermore, application of an unsupervised fuzzy-c-mean classifier to evaluate the ability of the combined EEG-ECG based features to classify pre and post-treatment seizures achieved a classification accuracy of 85.85%. These results indicate the importance of timely delivery of VNS to reduce seizure severity and thus help achieve better seizure control for patients with epilepsy. The proposed set of quantitative features could be used as potential biomarkers for predicting long-term response to VNS therapy.

Spectral gene set enrichment (SGSE).

PubMed

Frost, H Robert; Li, Zhigang; Moore, Jason H

2015-03-03

Gene set testing is typically performed in a supervised context to quantify the association between groups of genes and a clinical phenotype. In many cases, however, a gene set-based interpretation of genomic data is desired in the absence of a phenotype variable. Although methods exist for unsupervised gene set testing, they predominantly compute enrichment relative to clusters of the genomic variables with performance strongly dependent on the clustering algorithm and number of clusters. We propose a novel method, spectral gene set enrichment (SGSE), for unsupervised competitive testing of the association between gene sets and empirical data sources. SGSE first computes the statistical association between gene sets and principal components (PCs) using our principal component gene set enrichment (PCGSE) method. The overall statistical association between each gene set and the spectral structure of the data is then computed by combining the PC-level p-values using the weighted Z-method with weights set to the PC variance scaled by Tracy-Widom test p-values. Using simulated data, we show that the SGSE algorithm can accurately recover spectral features from noisy data. To illustrate the utility of our method on real data, we demonstrate the superior performance of the SGSE method relative to standard cluster-based techniques for testing the association between MSigDB gene sets and the variance structure of microarray gene expression data. Unsupervised gene set testing can provide important information about the biological signal held in high-dimensional genomic data sets. Because it uses the association between gene sets and samples PCs to generate a measure of unsupervised enrichment, the SGSE method is independent of cluster or network creation algorithms and, most importantly, is able to utilize the statistical significance of PC eigenvalues to ignore elements of the data most likely to represent noise.

Applications of LANDSAT data to the integrated economic development of Mindoro, Phillipines

NASA Technical Reports Server (NTRS)

Wagner, T. W.; Fernandez, J. C.

1977-01-01

LANDSAT data is seen as providing essential up-to-date resource information for the planning process. LANDSAT data of Mindoro Island in the Philippines was processed to provide thematic maps showing patterns of agriculture, forest cover, terrain, wetlands and water turbidity. A hybrid approach using both supervised and unsupervised classification techniques resulted in 30 different scene classes which were subsequently color-coded and mapped at a scale of 1:250,000. In addition, intensive image analysis is being carried out in evaluating the images. The images, maps, and aerial statistics are being used to provide data to seven technical departments in planning the economic development of Mindoro. Multispectral aircraft imagery was collected to compliment the application of LANDSAT data and validate the classification results.

User Activity Recognition in Smart Homes Using Pattern Clustering Applied to Temporal ANN Algorithm.

PubMed

Bourobou, Serge Thomas Mickala; Yoo, Younghwan

2015-05-21

This paper discusses the possibility of recognizing and predicting user activities in the IoT (Internet of Things) based smart environment. The activity recognition is usually done through two steps: activity pattern clustering and activity type decision. Although many related works have been suggested, they had some limited performance because they focused only on one part between the two steps. This paper tries to find the best combination of a pattern clustering method and an activity decision algorithm among various existing works. For the first step, in order to classify so varied and complex user activities, we use a relevant and efficient unsupervised learning method called the K-pattern clustering algorithm. In the second step, the training of smart environment for recognizing and predicting user activities inside his/her personal space is done by utilizing the artificial neural network based on the Allen's temporal relations. The experimental results show that our combined method provides the higher recognition accuracy for various activities, as compared with other data mining classification algorithms. Furthermore, it is more appropriate for a dynamic environment like an IoT based smart home.

Blood Vessel Extraction in Color Retinal Fundus Images with Enhancement Filtering and Unsupervised Classification

PubMed Central

2017-01-01

Retinal blood vessels have a significant role in the diagnosis and treatment of various retinal diseases such as diabetic retinopathy, glaucoma, arteriosclerosis, and hypertension. For this reason, retinal vasculature extraction is important in order to help specialists for the diagnosis and treatment of systematic diseases. In this paper, a novel approach is developed to extract retinal blood vessel network. Our method comprises four stages: (1) preprocessing stage in order to prepare dataset for segmentation; (2) an enhancement procedure including Gabor, Frangi, and Gauss filters obtained separately before a top-hat transform; (3) a hard and soft clustering stage which includes K-means and Fuzzy C-means (FCM) in order to get binary vessel map; and (4) a postprocessing step which removes falsely segmented isolated regions. The method is tested on color retinal images obtained from STARE and DRIVE databases which are available online. As a result, Gabor filter followed by K-means clustering method achieves 95.94% and 95.71% of accuracy for STARE and DRIVE databases, respectively, which are acceptable for diagnosis systems. PMID:29065611

Satellite image based methods for fuels maps updating

NASA Astrophysics Data System (ADS)

Alonso-Benito, Alfonso; Hernandez-Leal, Pedro A.; Arbelo, Manuel; Gonzalez-Calvo, Alejandro; Moreno-Ruiz, Jose A.; Garcia-Lazaro, Jose R.

2016-10-01

Regular updating of fuels maps is important for forest fire management. Nevertheless complex and time consuming field work is usually necessary for this purpose, which prevents a more frequent update. That is why the assessment of the usefulness of satellite data and the development of remote sensing techniques that enable the automatic updating of these maps, is of vital interest. In this work, we have tested the use of the spectral bands of OLI (Operational Land Imager) sensor on board Landsat 8 satellite, for updating the fuels map of El Hierro Island (Spain). From previously digitized map, a set of 200 reference plots for different fuel types was created. A 50% of the plots were randomly used as a training set and the rest were considered for validation. Six supervised and 2 unsupervised classification methods were applied, considering two levels of detail. A first level with only 5 classes (Meadow, Brushwood, Undergrowth canopy cover >50%, Undergrowth canopy cover <15%, and Xeric formations), and the second one containing 19 fuel types. The level 1 classification methods yielded an overall accuracy ranging from 44% for Parellelepided to an 84% for Maximun Likelihood. Meanwhile, level 2 results showed at best, an unacceptable overall accuracy of 34%, which prevents the use of this data for such a detailed characterization. Anyway it has been demonstrated that in some conditions, images of medium spatial resolution, like Landsat 8-OLI, could be a valid tool for an automatic upgrade of fuels maps, minimizing costs and complementing traditional methodologies.

Multi-objective evolutionary optimization for constructing neural networks for virtual reality visual data mining: application to geophysical prospecting.

PubMed

Valdés, Julio J; Barton, Alan J

2007-05-01

A method for the construction of virtual reality spaces for visual data mining using multi-objective optimization with genetic algorithms on nonlinear discriminant (NDA) neural networks is presented. Two neural network layers (the output and the last hidden) are used for the construction of simultaneous solutions for: (i) a supervised classification of data patterns and (ii) an unsupervised similarity structure preservation between the original data matrix and its image in the new space. A set of spaces are constructed from selected solutions along the Pareto front. This strategy represents a conceptual improvement over spaces computed by single-objective optimization. In addition, genetic programming (in particular gene expression programming) is used for finding analytic representations of the complex mappings generating the spaces (a composition of NDA and orthogonal principal components). The presented approach is domain independent and is illustrated via application to the geophysical prospecting of caves.

Quantification and Segmentation of Brain Tissues from MR Images: A Probabilistic Neural Network Approach

PubMed Central

Wang, Yue; Adalý, Tülay; Kung, Sun-Yuan; Szabo, Zsolt

2007-01-01

This paper presents a probabilistic neural network based technique for unsupervised quantification and segmentation of brain tissues from magnetic resonance images. It is shown that this problem can be solved by distribution learning and relaxation labeling, resulting in an efficient method that may be particularly useful in quantifying and segmenting abnormal brain tissues where the number of tissue types is unknown and the distributions of tissue types heavily overlap. The new technique uses suitable statistical models for both the pixel and context images and formulates the problem in terms of model-histogram fitting and global consistency labeling. The quantification is achieved by probabilistic self-organizing mixtures and the segmentation by a probabilistic constraint relaxation network. The experimental results show the efficient and robust performance of the new algorithm and that it outperforms the conventional classification based approaches. PMID:18172510

Combination of complementary data mining methods for geographical characterization of extra virgin olive oils based on mineral composition.

PubMed

Sayago, Ana; González-Domínguez, Raúl; Beltrán, Rafael; Fernández-Recamales, Ángeles

2018-09-30

This work explores the potential of multi-element fingerprinting in combination with advanced data mining strategies to assess the geographical origin of extra virgin olive oil samples. For this purpose, the concentrations of 55 elements were determined in 125 oil samples from multiple Spanish geographic areas. Several unsupervised and supervised multivariate statistical techniques were used to build classification models and investigate the relationship between mineral composition of olive oils and their provenance. Results showed that Spanish extra virgin olive oils exhibit characteristic element profiles, which can be differentiated on the basis of their origin in accordance with three geographical areas: Atlantic coast (Huelva province), Mediterranean coast and inland regions. Furthermore, statistical modelling yielded high sensitivity and specificity, principally when random forest and support vector machines were employed, thus demonstrating the utility of these techniques in food traceability and authenticity research. Copyright © 2018 Elsevier Ltd. All rights reserved.

PixelLearn

NASA Technical Reports Server (NTRS)

Mazzoni, Dominic; Wagstaff, Kiri; Bornstein, Benjamin; Tang, Nghia; Roden, Joseph

2006-01-01

PixelLearn is an integrated user-interface computer program for classifying pixels in scientific images. Heretofore, training a machine-learning algorithm to classify pixels in images has been tedious and difficult. PixelLearn provides a graphical user interface that makes it faster and more intuitive, leading to more interactive exploration of image data sets. PixelLearn also provides image-enhancement controls to make it easier to see subtle details in images. PixelLearn opens images or sets of images in a variety of common scientific file formats and enables the user to interact with several supervised or unsupervised machine-learning pixel-classifying algorithms while the user continues to browse through the images. The machinelearning algorithms in PixelLearn use advanced clustering and classification methods that enable accuracy much higher than is achievable by most other software previously available for this purpose. PixelLearn is written in portable C++ and runs natively on computers running Linux, Windows, or Mac OS X.

Entanglement-Based Machine Learning on a Quantum Computer

NASA Astrophysics Data System (ADS)

Cai, X.-D.; Wu, D.; Su, Z.-E.; Chen, M.-C.; Wang, X.-L.; Li, Li; Liu, N.-L.; Lu, C.-Y.; Pan, J.-W.

2015-03-01

Machine learning, a branch of artificial intelligence, learns from previous experience to optimize performance, which is ubiquitous in various fields such as computer sciences, financial analysis, robotics, and bioinformatics. A challenge is that machine learning with the rapidly growing "big data" could become intractable for classical computers. Recently, quantum machine learning algorithms [Lloyd, Mohseni, and Rebentrost, arXiv.1307.0411] were proposed which could offer an exponential speedup over classical algorithms. Here, we report the first experimental entanglement-based classification of two-, four-, and eight-dimensional vectors to different clusters using a small-scale photonic quantum computer, which are then used to implement supervised and unsupervised machine learning. The results demonstrate the working principle of using quantum computers to manipulate and classify high-dimensional vectors, the core mathematical routine in machine learning. The method can, in principle, be scaled to larger numbers of qubits, and may provide a new route to accelerate machine learning.

Evaluation of different shadow detection and restoration methods and their impact on vegetation indices using UAV high-resolution imageries over vineyards

NASA Astrophysics Data System (ADS)

Aboutalebi, M.; Torres-Rua, A. F.; McKee, M.; Kustas, W. P.; Nieto, H.

2017-12-01

Shadows are an unavoidable component of high-resolution imagery. Although shadows can be a useful source of information about terrestrial features, they are a hindrance for image processing and lead to misclassification errors and increased uncertainty in defining surface reflectance properties. In precision agriculture activities, shadows may affect the performance of vegetation indices at pixel and plant scales. Thus, it becomes necessary to evaluate existing shadow detection and restoration methods, especially for applications that makes direct use of pixel information to estimate vegetation biomass, leaf area index (LAI), plant water use and stress, chlorophyll content, just to name a few. In this study, four high-resolution imageries captured by the Utah State University - AggieAir Unmanned Aerial Vehicle (UAV) system flown in 2014, 2015, and 2016 over a commercial vineyard located in the California for the USDA-Agricultural Research Service Grape Remote sensing Atmospheric Profile and Evapotranspiration Experiment (GRAPEX) Program are used for shadow detection and restoration. Four different methods for shadow detection are compared: (1) unsupervised classification, (2) supervised classification, (3) index-based method, and (4) physically-based method. Also, two different shadow restoration methods are evaluated: (1) linear correlation correction, and (2) gamma correction. The models' performance is evaluated over two vegetation indices: normalized difference vegetation index (NDVI) and LAI for both sunlit and shadowed pixels. Histogram and analysis of variance (ANOVA) are used as performance indicators. Results indicated that the performance of the supervised classification and the index-based method are better than other methods. In addition, there is a statistical difference between the average of NDVI and LAI on the sunlit and shadowed pixels. Among the shadow restoration methods, gamma correction visually works better than the linear correlation correction. Moreover, the statistical difference between sunlit and shadowed NDVI and LAI decreases after the application of the gamma restoration method. Potential effects of shadows on modeling surface energy balance and evapotranspiration using very high resolution UAV imagery over the GRAPEX vineyard will be discussed.

Classifying seismic noise and sources from OBS data using unsupervised machine learning

NASA Astrophysics Data System (ADS)

Mosher, S. G.; Audet, P.

2017-12-01

The paradigm of plate tectonics was established mainly by recognizing the central role of oceanic plates in the production and destruction of tectonic plates at their boundaries. Since that realization, however, seismic studies of tectonic plates and their associated deformation have slowly shifted their attention toward continental plates due to the ease of installation and maintenance of high-quality seismic networks on land. The result has been a much more detailed understanding of the seismicity patterns associated with continental plate deformation in comparison with the low-magnitude deformation patterns within oceanic plates and at their boundaries. While the number of high-quality ocean-bottom seismometer (OBS) deployments within the past decade has demonstrated the potential to significantly increase our understanding of tectonic systems in oceanic settings, OBS data poses significant challenges to many of the traditional data processing techniques in seismology. In particular, problems involving the detection, location, and classification of seismic sources occurring within oceanic settings are much more difficult due to the extremely noisy seafloor environment in which data are recorded. However, classifying data without a priori constraints is a problem that is routinely pursued via unsupervised machine learning algorithms, which remain robust even in cases involving complicated datasets. In this research, we apply simple unsupervised machine learning algorithms (e.g., clustering) to OBS data from the Cascadia Initiative in an attempt to classify and detect a broad range of seismic sources, including various noise sources and tremor signals occurring within ocean settings.

Texture analysis with statistical methods for wheat ear extraction

NASA Astrophysics Data System (ADS)

Bakhouche, M.; Cointault, F.; Gouton, P.

2007-01-01

In agronomic domain, the simplification of crop counting, necessary for yield prediction and agronomic studies, is an important project for technical institutes such as Arvalis. Although the main objective of our global project is to conceive a mobile robot for natural image acquisition directly in a field, Arvalis has proposed us first to detect by image processing the number of wheat ears in images before to count them, which will allow to obtain the first component of the yield. In this paper we compare different texture image segmentation techniques based on feature extraction by first and higher order statistical methods which have been applied on our images. The extracted features are used for unsupervised pixel classification to obtain the different classes in the image. So, the K-means algorithm is implemented before the choice of a threshold to highlight the ears. Three methods have been tested in this feasibility study with very average error of 6%. Although the evaluation of the quality of the detection is visually done, automatic evaluation algorithms are currently implementing. Moreover, other statistical methods of higher order will be implemented in the future jointly with methods based on spatio-frequential transforms and specific filtering.

Urban Shanty Town Recognition Based on High-Resolution Remote Sensing Images and National Geographical Monitoring Features - a Case Study of Nanning City

NASA Astrophysics Data System (ADS)

He, Y.; He, Y.

2018-04-01

Urban shanty towns are communities that has contiguous old and dilapidated houses with more than 2000 square meters built-up area or more than 50 households. This study makes attempts to extract shanty towns in Nanning City using the product of Census and TripleSat satellite images. With 0.8-meter high-resolution remote sensing images, five texture characteristics (energy, contrast, maximum probability, and inverse difference moment) of shanty towns are trained and analyzed through GLCM. In this study, samples of shanty town are well classified with 98.2 % producer accuracy of unsupervised classification and 73.2 % supervised classification correctness. Low-rise and mid-rise residential blocks in Nanning City are classified into 4 different types by using k-means clustering and nearest neighbour classification respectively. This study initially establish texture feature descriptions of different types of residential areas, especially low-rise and mid-rise buildings, which would help city administrator evaluate residential blocks and reconstruction shanty towns.

Interactive classification and content-based retrieval of tissue images

NASA Astrophysics Data System (ADS)

Aksoy, Selim; Marchisio, Giovanni B.; Tusk, Carsten; Koperski, Krzysztof

2002-11-01

We describe a system for interactive classification and retrieval of microscopic tissue images. Our system models tissues in pixel, region and image levels. Pixel level features are generated using unsupervised clustering of color and texture values. Region level features include shape information and statistics of pixel level feature values. Image level features include statistics and spatial relationships of regions. To reduce the gap between low-level features and high-level expert knowledge, we define the concept of prototype regions. The system learns the prototype regions in an image collection using model-based clustering and density estimation. Different tissue types are modeled using spatial relationships of these regions. Spatial relationships are represented by fuzzy membership functions. The system automatically selects significant relationships from training data and builds models which can also be updated using user relevance feedback. A Bayesian framework is used to classify tissues based on these models. Preliminary experiments show that the spatial relationship models we developed provide a flexible and powerful framework for classification and retrieval of tissue images.

Evaluation of multiband, multitemporal, and transformed LANDSAT MSS data for land cover area estimation. [North Central Missouri

NASA Technical Reports Server (NTRS)

Stoner, E. R.; May, G. A.; Kalcic, M. T. (Principal Investigator)

1981-01-01

Sample segments of ground-verified land cover data collected in conjunction with the USDA/ESS June Enumerative Survey were merged with LANDSAT data and served as a focus for unsupervised spectral class development and accuracy assessment. Multitemporal data sets were created from single-date LANDSAT MSS acquisitions from a nominal scene covering an eleven-county area in north central Missouri. Classification accuracies for the four land cover types predominant in the test site showed significant improvement in going from unitemporal to multitemporal data sets. Transformed LANDSAT data sets did not significantly improve classification accuracies. Regression estimators yielded mixed results for different land covers. Misregistration of two LANDSAT data sets by as much and one half pixels did not significantly alter overall classification accuracies. Existing algorithms for scene-to scene overlay proved adequate for multitemporal data analysis as long as statistical class development and accuracy assessment were restricted to field interior pixels.

A Comparison of Synoptic Classification Methods for Application to Wind Power Prediction

NASA Astrophysics Data System (ADS)

Fowler, P.; Basu, S.

2008-12-01

Wind energy is a highly variable resource. To make it competitive with other sources of energy for integration on the power grid, at the very least, a day-ahead forecast of power output must be available. In many grid operations worldwide, next-day power output is scheduled in 30 minute intervals and grid management routinely occurs at real time. Maintenance and repairs require costly time to complete and must be scheduled along with normal operations. Revenue is dependent on the reliability of the entire system. In other words, there is financial and managerial benefit to short-term prediction of wind power. One approach to short-term forecasting is to combine a data centric method such as an artificial neural network with a physically based approach like numerical weather prediction (NWP). The key is in associating high-dimensional NWP model output with the most appropriately trained neural network. Because neural networks perform the best in the situations they are designed for, one can hypothesize that if one can identify similar recurring states in historical weather data, this data can be used to train multiple custom designed neural networks to be used when called upon by numerical prediction. Identifying similar recurring states may offer insight to how a neural network forecast can be improved, but amassing the knowledge and utilizing it efficiently in the time required for power prediction would be difficult for a human to master, thus showing the advantage of classification. Classification methods are important tools for short-term forecasting because they can be unsupervised, objective, and computationally quick. They primarily involve categorizing data sets in to dominant weather classes, but there are numerous ways to define a class and a great variety in interpretation of the results. In the present study a collection of classification methods are used on a sampling of atmospheric variables from the North American Regional Reanalysis data set. The results will be discussed in relation to their use for short-term wind power forecasting by neural networks.

Audio-based, unsupervised machine learning reveals cyclic changes in earthquake mechanisms in the Geysers geothermal field, California

NASA Astrophysics Data System (ADS)

Holtzman, B. K.; Paté, A.; Paisley, J.; Waldhauser, F.; Repetto, D.; Boschi, L.

2017-12-01

The earthquake process reflects complex interactions of stress, fracture and frictional properties. New machine learning methods reveal patterns in time-dependent spectral properties of seismic signals and enable identification of changes in faulting processes. Our methods are based closely on those developed for music information retrieval and voice recognition, using the spectrogram instead of the waveform directly. Unsupervised learning involves identification of patterns based on differences among signals without any additional information provided to the algorithm. Clustering of 46,000 earthquakes of $0.3

Knowledge-Based Topic Model for Unsupervised Object Discovery and Localization.

PubMed

Niu, Zhenxing; Hua, Gang; Wang, Le; Gao, Xinbo

Unsupervised object discovery and localization is to discover some dominant object classes and localize all of object instances from a given image collection without any supervision. Previous work has attempted to tackle this problem with vanilla topic models, such as latent Dirichlet allocation (LDA). However, in those methods no prior knowledge for the given image collection is exploited to facilitate object discovery. On the other hand, the topic models used in those methods suffer from the topic coherence issue-some inferred topics do not have clear meaning, which limits the final performance of object discovery. In this paper, prior knowledge in terms of the so-called must-links are exploited from Web images on the Internet. Furthermore, a novel knowledge-based topic model, called LDA with mixture of Dirichlet trees, is proposed to incorporate the must-links into topic modeling for object discovery. In particular, to better deal with the polysemy phenomenon of visual words, the must-link is re-defined as that one must-link only constrains one or some topic(s) instead of all topics, which leads to significantly improved topic coherence. Moreover, the must-links are built and grouped with respect to specific object classes, thus the must-links in our approach are semantic-specific , which allows to more efficiently exploit discriminative prior knowledge from Web images. Extensive experiments validated the efficiency of our proposed approach on several data sets. It is shown that our method significantly improves topic coherence and outperforms the unsupervised methods for object discovery and localization. In addition, compared with discriminative methods, the naturally existing object classes in the given image collection can be subtly discovered, which makes our approach well suited for realistic applications of unsupervised object discovery.Unsupervised object discovery and localization is to discover some dominant object classes and localize all of object instances from a given image collection without any supervision. Previous work has attempted to tackle this problem with vanilla topic models, such as latent Dirichlet allocation (LDA). However, in those methods no prior knowledge for the given image collection is exploited to facilitate object discovery. On the other hand, the topic models used in those methods suffer from the topic coherence issue-some inferred topics do not have clear meaning, which limits the final performance of object discovery. In this paper, prior knowledge in terms of the so-called must-links are exploited from Web images on the Internet. Furthermore, a novel knowledge-based topic model, called LDA with mixture of Dirichlet trees, is proposed to incorporate the must-links into topic modeling for object discovery. In particular, to better deal with the polysemy phenomenon of visual words, the must-link is re-defined as that one must-link only constrains one or some topic(s) instead of all topics, which leads to significantly improved topic coherence. Moreover, the must-links are built and grouped with respect to specific object classes, thus the must-links in our approach are semantic-specific , which allows to more efficiently exploit discriminative prior knowledge from Web images. Extensive experiments validated the efficiency of our proposed approach on several data sets. It is shown that our method significantly improves topic coherence and outperforms the unsupervised methods for object discovery and localization. In addition, compared with discriminative methods, the naturally existing object classes in the given image collection can be subtly discovered, which makes our approach well suited for realistic applications of unsupervised object discovery.

Quantifying tree mortality in a mixed species woodland using multitemporal high spatial resolution satellite imagery

USGS Publications Warehouse

Garrity, Steven R.; Allen, Craig D.; Brumby, Steven P.; Gangodagamage, Chandana; McDowell, Nate G.; Cai, D. Michael

2013-01-01

Widespread tree mortality events have recently been observed in several biomes. To effectively quantify the severity and extent of these events, tools that allow for rapid assessment at the landscape scale are required. Past studies using high spatial resolution satellite imagery have primarily focused on detecting green, red, and gray tree canopies during and shortly after tree damage or mortality has occurred. However, detecting trees in various stages of death is not always possible due to limited availability of archived satellite imagery. Here we assess the capability of high spatial resolution satellite imagery for tree mortality detection in a southwestern U.S. mixed species woodland using archived satellite images acquired prior to mortality and well after dead trees had dropped their leaves. We developed a multistep classification approach that uses: supervised masking of non-tree image elements; bi-temporal (pre- and post-mortality) differencing of normalized difference vegetation index (NDVI) and red:green ratio (RGI); and unsupervised multivariate clustering of pixels into live and dead tree classes using a Gaussian mixture model. Classification accuracies were improved in a final step by tuning the rules of pixel classification using the posterior probabilities of class membership obtained from the Gaussian mixture model. Classifications were produced for two images acquired post-mortality with overall accuracies of 97.9% and 98.5%, respectively. Classified images were combined with land cover data to characterize the spatiotemporal characteristics of tree mortality across areas with differences in tree species composition. We found that 38% of tree crown area was lost during the drought period between 2002 and 2006. The majority of tree mortality during this period was concentrated in piñon-juniper (Pinus edulis-Juniperus monosperma) woodlands. An additional 20% of the tree canopy died or was removed between 2006 and 2011, primarily in areas experiencing wildfire and management activity. -Our results demonstrate that unsupervised clustering of bi-temporal NDVI and RGI differences can be used to detect tree mortality resulting from numerous causes and in several forest cover types.

Bayesian Fusion of Color and Texture Segmentations

NASA Technical Reports Server (NTRS)

Manduchi, Roberto

2000-01-01

In many applications one would like to use information from both color and texture features in order to segment an image. We propose a novel technique to combine "soft" segmentations computed for two or more features independently. Our algorithm merges models according to a mean entropy criterion, and allows to choose the appropriate number of classes for the final grouping. This technique also allows to improve the quality of supervised classification based on one feature (e.g. color) by merging information from unsupervised segmentation based on another feature (e.g., texture.)

Topic Model for Graph Mining.

PubMed

Xuan, Junyu; Lu, Jie; Zhang, Guangquan; Luo, Xiangfeng

2015-12-01

Graph mining has been a popular research area because of its numerous application scenarios. Many unstructured and structured data can be represented as graphs, such as, documents, chemical molecular structures, and images. However, an issue in relation to current research on graphs is that they cannot adequately discover the topics hidden in graph-structured data which can be beneficial for both the unsupervised learning and supervised learning of the graphs. Although topic models have proved to be very successful in discovering latent topics, the standard topic models cannot be directly applied to graph-structured data due to the "bag-of-word" assumption. In this paper, an innovative graph topic model (GTM) is proposed to address this issue, which uses Bernoulli distributions to model the edges between nodes in a graph. It can, therefore, make the edges in a graph contribute to latent topic discovery and further improve the accuracy of the supervised and unsupervised learning of graphs. The experimental results on two different types of graph datasets show that the proposed GTM outperforms the latent Dirichlet allocation on classification by using the unveiled topics of these two models to represent graphs.

Unsupervised clustering of gene expression data points at hypoxia as possible trigger for metabolic syndrome.

PubMed

Ptitsyn, Andrey; Hulver, Matthew; Cefalu, William; York, David; Smith, Steven R

2006-12-19

Classification of large volumes of data produced in a microarray experiment allows for the extraction of important clues as to the nature of a disease. Using multi-dimensional unsupervised FOREL (FORmal ELement) algorithm we have re-analyzed three public datasets of skeletal muscle gene expression in connection with insulin resistance and type 2 diabetes (DM2). Our analysis revealed the major line of variation between expression profiles of normal, insulin resistant, and diabetic skeletal muscle. A cluster of most "metabolically sound" samples occupied one end of this line. The distance along this line coincided with the classic markers of diabetes risk, namely obesity and insulin resistance, but did not follow the accepted clinical diagnosis of DM2 as defined by the presence or absence of hyperglycemia. Genes implicated in this expression pattern are those controlling skeletal muscle fiber type and glycolytic metabolism. Additionally myoglobin and hemoglobin were upregulated and ribosomal genes deregulated in insulin resistant patients. Our findings are concordant with the changes seen in skeletal muscle with altitude hypoxia. This suggests that hypoxia and shift to glycolytic metabolism may also drive insulin resistance.

Sparse alignment for robust tensor learning.

PubMed

Lai, Zhihui; Wong, Wai Keung; Xu, Yong; Zhao, Cairong; Sun, Mingming

2014-10-01

Multilinear/tensor extensions of manifold learning based algorithms have been widely used in computer vision and pattern recognition. This paper first provides a systematic analysis of the multilinear extensions for the most popular methods by using alignment techniques, thereby obtaining a general tensor alignment framework. From this framework, it is easy to show that the manifold learning based tensor learning methods are intrinsically different from the alignment techniques. Based on the alignment framework, a robust tensor learning method called sparse tensor alignment (STA) is then proposed for unsupervised tensor feature extraction. Different from the existing tensor learning methods, L1- and L2-norms are introduced to enhance the robustness in the alignment step of the STA. The advantage of the proposed technique is that the difficulty in selecting the size of the local neighborhood can be avoided in the manifold learning based tensor feature extraction algorithms. Although STA is an unsupervised learning method, the sparsity encodes the discriminative information in the alignment step and provides the robustness of STA. Extensive experiments on the well-known image databases as well as action and hand gesture databases by encoding object images as tensors demonstrate that the proposed STA algorithm gives the most competitive performance when compared with the tensor-based unsupervised learning methods.

Towards a new classification of stable phase schizophrenia into major and simple neuro-cognitive psychosis: Results of unsupervised machine learning analysis.

PubMed

Kanchanatawan, Buranee; Sriswasdi, Sira; Thika, Supaksorn; Stoyanov, Drozdstoy; Sirivichayakul, Sunee; Carvalho, André F; Geffard, Michel; Maes, Michael

2018-05-23

Deficit schizophrenia, as defined by the Schedule for Deficit Syndrome, may represent a distinct diagnostic class defined by neurocognitive impairments coupled with changes in IgA/IgM responses to tryptophan catabolites (TRYCATs). Adequate classifications should be based on supervised and unsupervised learning rather than on consensus criteria. This study used machine learning as means to provide a more accurate classification of patients with stable phase schizophrenia. We found that using negative symptoms as discriminatory variables, schizophrenia patients may be divided into two distinct classes modelled by (A) impairments in IgA/IgM responses to noxious and generally more protective tryptophan catabolites, (B) impairments in episodic and semantic memory, paired associative learning and false memory creation, and (C) psychotic, excitation, hostility, mannerism, negative, and affective symptoms. The first cluster shows increased negative, psychotic, excitation, hostility, mannerism, depression and anxiety symptoms, and more neuroimmune and cognitive disorders and is therefore called "major neurocognitive psychosis" (MNP). The second cluster, called "simple neurocognitive psychosis" (SNP) is discriminated from normal controls by the same features although the impairments are less well developed than in MNP. The latter is additionally externally validated by lowered quality of life, body mass (reflecting a leptosome body type), and education (reflecting lower cognitive reserve). Previous distinctions including "type 1" (positive)/"type 2" (negative) and DSM-IV-TR (eg, paranoid) schizophrenia could not be validated using machine learning techniques. Previous names of the illness, including schizophrenia, are not very adequate because they do not describe the features of the illness, namely, interrelated neuroimmune, cognitive, and clinical features. Stable-phase schizophrenia consists of 2 relevant qualitatively distinct categories or nosological entities with SNP being a less well-developed phenotype, while MNP is the full blown phenotype or core illness. Major neurocognitive psychosis and SNP should be added to the DSM-5 and incorporated into the Research Domain Criteria project. © 2018 John Wiley & Sons, Ltd.

Chemical modeling of groundwater in the Banat Plain, southwestern Romania, with elevated As content and co-occurring species by combining diagrams and unsupervised multivariate statistical approaches.

PubMed

Butaciu, Sinziana; Senila, Marin; Sarbu, Costel; Ponta, Michaela; Tanaselia, Claudiu; Cadar, Oana; Roman, Marius; Radu, Emil; Sima, Mihaela; Frentiu, Tiberiu

2017-04-01

The study proposes a combined model based on diagrams (Gibbs, Piper, Stuyfzand Hydrogeochemical Classification System) and unsupervised statistical approaches (Cluster Analysis, Principal Component Analysis, Fuzzy Principal Component Analysis, Fuzzy Hierarchical Cross-Clustering) to describe natural enrichment of inorganic arsenic and co-occurring species in groundwater in the Banat Plain, southwestern Romania. Speciation of inorganic As (arsenite, arsenate), ion concentrations (Na + , K + , Ca 2+ , Mg 2+ , HCO 3 - , Cl - , F - , SO 4 2- , PO 4 3- , NO 3 - ), pH, redox potential, conductivity and total dissolved substances were performed. Classical diagrams provided the hydrochemical characterization, while statistical approaches were helpful to establish (i) the mechanism of naturally occurring of As and F - species and the anthropogenic one for NO 3 - , SO 4 2- , PO 4 3- and K + and (ii) classification of groundwater based on content of arsenic species. The HCO 3 - type of local groundwater and alkaline pH (8.31-8.49) were found to be responsible for the enrichment of arsenic species and occurrence of F - but by different paths. The PO 4 3- -AsO 4 3- ion exchange, water-rock interaction (silicates hydrolysis and desorption from clay) were associated to arsenate enrichment in the oxidizing aquifer. Fuzzy Hierarchical Cross-Clustering was the strongest tool for the rapid simultaneous classification of groundwaters as a function of arsenic content and hydrogeochemical characteristics. The approach indicated the Na + -F - -pH cluster as marker for groundwater with naturally elevated As and highlighted which parameters need to be monitored. A chemical conceptual model illustrating the natural and anthropogenic paths and enrichment of As and co-occurring species in the local groundwater supported by mineralogical analysis of rocks was established. Copyright © 2016 Elsevier Ltd. All rights reserved.

Classification of leafy spurge with earth observing-1 advanced land imager

USGS Publications Warehouse

Stitt, S.; Root, R.; Brown, K.; Hager, S.; Mladinich, C.; Anderson, G.L.; Dudek, K.; Bustos, M.R.; Kokaly, R.

2006-01-01

Leafy spurge (Euphorbia esula L.) is an invasive exotic plant that can completely displace native plant communities. Automated techniques for monitoring the location and extent of leafy spurge, especially if available on a seasonal basis, could add greatly to the effectiveness of control measures. As part of a larger study including multiple sensors, this study examines the utility of mapping the location and extent of leafy spurge in Theodore Roosevelt National Park using Earth Observing-1 satellite Advanced Land Imager (ALI) scanner data. An unsupervised classification methodology was used producing accuracies in the range of 59% to 66%. Existing field studies, with their associated limitations, were used for identifying class membership and accuracy assessment. This sensor could be useful for broad landscape scale mapping of leafy spurge, from which control measures could be based.

Classification of multispectral or hyperspectral satellite imagery using clustering of sparse approximations on sparse representations in learned dictionaries obtained using efficient convolutional sparse coding

DOEpatents

Moody, Daniela; Wohlberg, Brendt

2018-01-02

An approach for land cover classification, seasonal and yearly change detection and monitoring, and identification of changes in man-made features may use a clustering of sparse approximations (CoSA) on sparse representations in learned dictionaries. The learned dictionaries may be derived using efficient convolutional sparse coding to build multispectral or hyperspectral, multiresolution dictionaries that are adapted to regional satellite image data. Sparse image representations of images over the learned dictionaries may be used to perform unsupervised k-means clustering into land cover categories. The clustering process behaves as a classifier in detecting real variability. This approach may combine spectral and spatial textural characteristics to detect geologic, vegetative, hydrologic, and man-made features, as well as changes in these features over time.

A comparative evaluation of supervised and unsupervised representation learning approaches for anaplastic medulloblastoma differentiation

NASA Astrophysics Data System (ADS)

Cruz-Roa, Angel; Arevalo, John; Basavanhally, Ajay; Madabhushi, Anant; González, Fabio

2015-01-01

Learning data representations directly from the data itself is an approach that has shown great success in different pattern recognition problems, outperforming state-of-the-art feature extraction schemes for different tasks in computer vision, speech recognition and natural language processing. Representation learning applies unsupervised and supervised machine learning methods to large amounts of data to find building-blocks that better represent the information in it. Digitized histopathology images represents a very good testbed for representation learning since it involves large amounts of high complex, visual data. This paper presents a comparative evaluation of different supervised and unsupervised representation learning architectures to specifically address open questions on what type of learning architectures (deep or shallow), type of learning (unsupervised or supervised) is optimal. In this paper we limit ourselves to addressing these questions in the context of distinguishing between anaplastic and non-anaplastic medulloblastomas from routine haematoxylin and eosin stained images. The unsupervised approaches evaluated were sparse autoencoders and topographic reconstruct independent component analysis, and the supervised approach was convolutional neural networks. Experimental results show that shallow architectures with more neurons are better than deeper architectures without taking into account local space invariances and that topographic constraints provide useful invariant features in scale and rotations for efficient tumor differentiation.

Neural networks for learning and prediction with applications to remote sensing and speech perception

NASA Astrophysics Data System (ADS)

Gjaja, Marin N.

1997-11-01

Neural networks for supervised and unsupervised learning are developed and applied to problems in remote sensing, continuous map learning, and speech perception. Adaptive Resonance Theory (ART) models are real-time neural networks for category learning, pattern recognition, and prediction. Unsupervised fuzzy ART networks synthesize fuzzy logic and neural networks, and supervised ARTMAP networks incorporate ART modules for prediction and classification. New ART and ARTMAP methods resulting from analyses of data structure, parameter specification, and category selection are developed. Architectural modifications providing flexibility for a variety of applications are also introduced and explored. A new methodology for automatic mapping from Landsat Thematic Mapper (TM) and terrain data, based on fuzzy ARTMAP, is developed. System capabilities are tested on a challenging remote sensing problem, prediction of vegetation classes in the Cleveland National Forest from spectral and terrain features. After training at the pixel level, performance is tested at the stand level, using sites not seen during training. Results are compared to those of maximum likelihood classifiers, back propagation neural networks, and K-nearest neighbor algorithms. Best performance is obtained using a hybrid system based on a convex combination of fuzzy ARTMAP and maximum likelihood predictions. This work forms the foundation for additional studies exploring fuzzy ARTMAP's capability to estimate class mixture composition for non-homogeneous sites. Exploratory simulations apply ARTMAP to the problem of learning continuous multidimensional mappings. A novel system architecture retains basic ARTMAP properties of incremental and fast learning in an on-line setting while adding components to solve this class of problems. The perceptual magnet effect is a language-specific phenomenon arising early in infant speech development that is characterized by a warping of speech sound perception. An unsupervised neural network model is proposed that embodies two principal hypotheses supported by experimental data--that sensory experience guides language-specific development of an auditory neural map and that a population vector can predict psychological phenomena based on map cell activities. Model simulations show how a nonuniform distribution of map cell firing preferences can develop from language-specific input and give rise to the magnet effect.

The affection of boreal forest changes on imbalance of Nature (Invited)

NASA Astrophysics Data System (ADS)

Tana, G.; Tateishi, R.

2013-12-01

Abstract: The balance of nature does not exist, and, perhaps, never has existed [1]. In other words, the Mother Nature is imbalanced at all. The Mother Nature is changing every moment and never returns to previous condition. Because of the imbalance of nature, global climate has been changing gradually. To reveal the imbalance of nature, there is a need to monitor the dynamic changes of the Earth surface. Forest cover and forest cover change have been grown in importance as basic variables for modelling of global biogeochemical cycles as well as climate [2]. The boreal area contains 1/3 of the earth's trees. These trees play a large part in limiting harmful greenhouse gases by aborbing much of the earth's carbon dioxide (CO2) [3]. The boreal area mainly consists of needleleaf evergreen forest and needleleaf deciduous forest. Both of the needleleaf evergreen forest and needleleaf deciduous forest play the important roles on the uptake of CO2. However, because of the dormant period of needleleaf evergreen forest are shorter than that of needleleaf deciduous forest, needleleaf evergreen forest makes a greater contribution to the absorbtion of CO2. Satellite sensor because of its ability to observe the Earth continuously, can provide the opportunity to monitor the dynamic changes of the Earth. In this study, we used the MODerate resolution Imaging Spectroradiometer (MODIS) satellite data to monitor the dynamic change of boreal forest area which are mainly consist from needleleaf evergreen forest and needleleaf deciduous forest during 2003-2012. Three years MODIS data from the year 2003, 2008 and 2012 were used to detect the forest changed area. A hybrid change detection method which combines the threshold method and unsupervised classification method was used to detect the changes of forest area. In the first step, the difference of Normalized Difference Vegetation Index (NDVI) of the three years were calculated and were used to extract the changed areas by the threshold method. In the second step, the unsupervised classification method was used to classify and analyze detected change areas derived from the first step. Finally, the changed area were validated using the traning data collected for the three years. The validation result revealed that the forest in the study area has undergone the area and type changes during 2003-2012. The detailed procedure will be presented in the meeting. References: [1] Elton, C.S. (1930). Animal Ecology and Evolution. New York, Oxford University Press. [2] Potapov, P., Hansen, M. C., Stehman, S. V., Loveland, T. R., Pittman, K. (2008). Combining MODIS and Landsat imagery to estimate and map boreal forest cover loss, Remote Sensing of Environment, 112, 3708-3719. [3] Houghton, R. A. (2003). Why are estimates of the terrestrial carbon balance so different? Global Change Biology, 9, 500-509.

Intelligent topical sentiment analysis for the classification of e-learners and their topics of interest.

PubMed

Ravichandran, M; Kulanthaivel, G; Chellatamilan, T

2015-01-01

Every day, huge numbers of instant tweets (messages) are published on Twitter as it is one of the massive social media for e-learners interactions. The options regarding various interesting topics to be studied are discussed among the learners and teachers through the capture of ideal sources in Twitter. The common sentiment behavior towards these topics is received through the massive number of instant messages about them. In this paper, rather than using the opinion polarity of each message relevant to the topic, authors focus on sentence level opinion classification upon using the unsupervised algorithm named bigram item response theory (BIRT). It differs from the traditional classification and document level classification algorithm. The investigation illustrated in this paper is of threefold which are listed as follows: (1) lexicon based sentiment polarity of tweet messages; (2) the bigram cooccurrence relationship using naïve Bayesian; (3) the bigram item response theory (BIRT) on various topics. It has been proposed that a model using item response theory is constructed for topical classification inference. The performance has been improved remarkably using this bigram item response theory when compared with other supervised algorithms. The experiment has been conducted on a real life dataset containing different set of tweets and topics.

Development of remote sensing based site specific weed management for Midwest mint production

NASA Astrophysics Data System (ADS)

Gumz, Mary Saumur Paulson

Peppermint and spearmint are high value essential oil crops in Indiana, Michigan, and Wisconsin. Although the mints are profitable alternatives to corn and soybeans, mint production efficiency must improve in order to allow industry survival against foreign produced oils and synthetic flavorings. Weed control is the major input cost in mint production and tools to increase efficiency are necessary. Remote sensing-based site-specific weed management offers potential for decreasing weed control costs through simplified weed detection and control from accurate site specific weed and herbicide application maps. This research showed the practicability of remote sensing for weed detection in the mints. Research was designed to compare spectral response curves of field grown mint and weeds, and to use these data to develop spectral vegetation indices for automated weed detection. Viability of remote sensing in mint production was established using unsupervised classification, supervised classification, handheld spectroradiometer readings and spectral vegetation indices (SVIs). Unsupervised classification of multispectral images of peppermint production fields generated crop health maps with 92 and 67% accuracy in meadow and row peppermint, respectively. Supervised classification of multispectral images identified weed infestations with 97% and 85% accuracy for meadow and row peppermint, respectively. Supervised classification showed that peppermint was spectrally distinct from weeds, but the accuracy of these measures was dependent on extensive ground referencing which is impractical and too costly for on-farm use. Handheld spectroradiometer measurements of peppermint, spearmint, and several weeds and crop and weed mixtures were taken over three years from greenhouse grown plants, replicated field plots, and production peppermint and spearmint fields. Results showed that mints have greater near infrared (NIR) and lower green reflectance and a steeper red edge slope than all weed species. These distinguishing characteristics were combined to develop narrow band and broadband spectral vegetation indices (SVIs, ratios of NIR/green reflectance), that were effective in differentiating mint from key weed species. Hyperspectral images of production peppermint and spearmint fields were then classified using SVI-based classification. Narrowband and broadband SVIs classified early season peppermint and spearmint with 64 to 100% accuracy compared to 79 to 100% accuracy for supervised classification of multispectral images of the same fields. Broadband SVIs have potential for use as an automated spectral indicator for weeds in the mints since they require minimal ground referencing and can be calculated from multispectral imagery which is cheaper and more readily available than hyperspectral imagery. This research will allow growers to implement remote sensing based site specific weed management in mint resulting in reduced grower input costs and reduced herbicide entry into the environment and will have applications in other specialty and meadow crops.

Diagnostic index of 3D osteoarthritic changes in TMJ condylar morphology

NASA Astrophysics Data System (ADS)

Gomes, Liliane R.; Gomes, Marcelo; Jung, Bryan; Paniagua, Beatriz; Ruellas, Antonio C.; Gonçalves, João. Roberto; Styner, Martin A.; Wolford, Larry; Cevidanes, Lucia

2015-03-01

The aim of this study was to investigate imaging statistical approaches for classifying 3D osteoarthritic morphological variations among 169 Temporomandibular Joint (TMJ) condyles. Cone beam Computed Tomography (CBCT) scans were acquired from 69 patients with long-term TMJ Osteoarthritis (OA) (39.1 ± 15.7 years), 15 patients at initial diagnosis of OA (44.9 ± 14.8 years) and 7 healthy controls (43 ± 12.4 years). 3D surface models of the condyles were constructed and Shape Correspondence was used to establish correspondent points on each model. The statistical framework included a multivariate analysis of covariance (MANCOVA) and Direction-Projection- Permutation (DiProPerm) for testing statistical significance of the differences between healthy control and the OA group determined by clinical and radiographic diagnoses. Unsupervised classification using hierarchical agglomerative clustering (HAC) was then conducted. Condylar morphology in OA and healthy subjects varied widely. Compared with healthy controls, OA average condyle was statistically significantly smaller in all dimensions except its anterior surface. Significant flattening of the lateral pole was noticed at initial diagnosis (p < 0.05). It was observed areas of 3.88 mm bone resorption at the superior surface and 3.10 mm bone apposition at the anterior aspect of the long-term OA average model. 1000 permutation statistics of DiProPerm supported a significant difference between the healthy control group and OA group (t = 6.7, empirical p-value = 0.001). Clinically meaningful unsupervised classification of TMJ condylar morphology determined a preliminary diagnostic index of 3D osteoarthritic changes, which may be the first step towards a more targeted diagnosis of this condition.

Mapping of Geographically Isolated Wetlands of Western Siberia Using High Resolution Space Images

NASA Astrophysics Data System (ADS)

Dyukarev, E.; Pologova, N.; Dyukarev, A.; Lane, C.; Autrey, B. C.

2014-12-01

Using the remote sensing data for integrated study of natural objects is actual for investigation of difficult to access areas of West Siberia. The research of this study focuses on determining the extent and spectral signatures of isolated wetlands within Ob-Tom Interfluve area using Landsat and Quickbird space images. High-resolution space images were carefully examined and wetlands were manually delineated. Wetlands have clear visible signs at the high resolution space images. 567 wetlands were recognized as isolated wetlands with the area about 10 000 ha (of 2.5% of the study area). Isolated wetlands with area less 2 ha are the most frequent. Half of the total amount of wetlands has area less than 6.4 ha. The largest isolated wetland occupies 797 ha, and only 5% have area more than 50 ha. The Landsat 7 ETM+ data were used for analysis of vegetation structure and spectral characteristics of wetlands. The masked isolated wetlands image was classified into 12 land cover classes using ISODATA unsupervised classification. The attribution of unsupervised classification results allowed us to clearly recognize 7 types of wetlands: tall, low and sparse ryams (Pine-Shrub-Sphagnum community), open wetlands with shrub, moss or sedge cover, and open water objects. Analysis of spectral profiles for all classes has shown that Landsat spectral bands 4 and 5 have higher variability. These bands allow to separate wetland classed definitely. Accuracy assessment of isolated wetland map shows a good agreement with expert field data. The work was supported by grants ISTC № 4079.

Satellite altimetry in sea ice regions - detecting open water for estimating sea surface heights

NASA Astrophysics Data System (ADS)

Müller, Felix L.; Dettmering, Denise; Bosch, Wolfgang

2017-04-01

The Greenland Sea and the Farm Strait are transporting sea ice from the central Arctic ocean southwards. They are covered by a dynamic changing sea ice layer with significant influences on the Earth climate system. Between the sea ice there exist various sized open water areas known as leads, straight lined open water areas, and polynyas exhibiting a circular shape. Identifying these leads by satellite altimetry enables the extraction of sea surface height information. Analyzing the radar echoes, also called waveforms, provides information on the surface backscatter characteristics. For example waveforms reflected by calm water have a very narrow and single-peaked shape. Waveforms reflected by sea ice show more variability due to diffuse scattering. Here we analyze altimeter waveforms from different conventional pulse-limited satellite altimeters to separate open water and sea ice waveforms. An unsupervised classification approach employing partitional clustering algorithms such as K-medoids and memory-based classification methods such as K-nearest neighbor is used. The classification is based on six parameters derived from the waveform's shape, for example the maximum power or the peak's width. The open-water detection is quantitatively compared to SAR images processed while accounting for sea ice motion. The classification results are used to derive information about the temporal evolution of sea ice extent and sea surface heights. They allow to provide evidence on climate change relevant influences as for example Arctic sea level rise due to enhanced melting rates of Greenland's glaciers and an increasing fresh water influx into the Arctic ocean. Additionally, the sea ice cover extent analyzed over a long-time period provides an important indicator for a globally changing climate system.

Infrared vehicle recognition using unsupervised feature learning based on K-feature

NASA Astrophysics Data System (ADS)

Lin, Jin; Tan, Yihua; Xia, Haijiao; Tian, Jinwen

2018-02-01

Subject to the complex battlefield environment, it is difficult to establish a complete knowledge base in practical application of vehicle recognition algorithms. The infrared vehicle recognition is always difficult and challenging, which plays an important role in remote sensing. In this paper we propose a new unsupervised feature learning method based on K-feature to recognize vehicle in infrared images. First, we use the target detection algorithm which is based on the saliency to detect the initial image. Then, the unsupervised feature learning based on K-feature, which is generated by Kmeans clustering algorithm that extracted features by learning a visual dictionary from a large number of samples without label, is calculated to suppress the false alarm and improve the accuracy. Finally, the vehicle target recognition image is finished by some post-processing. Large numbers of experiments demonstrate that the proposed method has satisfy recognition effectiveness and robustness for vehicle recognition in infrared images under complex backgrounds, and it also improve the reliability of it.

Fossil Signatures Using Elemental Abundance Distributions and Bayesian Probabilistic Classification

NASA Technical Reports Server (NTRS)

Hoover, Richard B.; Storrie-Lombardi, Michael C.

2004-01-01

Elemental abundances (C6, N7, O8, Na11, Mg12, Al3, P15, S16, Cl17, K19, Ca20, Ti22, Mn25, Fe26, and Ni28) were obtained for a set of terrestrial fossils and the rock matrix surrounding them. Principal Component Analysis extracted five factors accounting for the 92.5% of the data variance, i.e. information content, of the elemental abundance data. Hierarchical Cluster Analysis provided unsupervised sample classification distinguishing fossil from matrix samples on the basis of either raw abundances or PCA input that agreed strongly with visual classification. A stochastic, non-linear Artificial Neural Network produced a Bayesian probability of correct sample classification. The results provide a quantitative probabilistic methodology for discriminating terrestrial fossils from the surrounding rock matrix using chemical information. To demonstrate the applicability of these techniques to the assessment of meteoritic samples or in situ extraterrestrial exploration, we present preliminary data on samples of the Orgueil meteorite. In both systems an elemental signature produces target classification decisions remarkably consistent with morphological classification by a human expert using only structural (visual) information. We discuss the possibility of implementing a complexity analysis metric capable of automating certain image analysis and pattern recognition abilities of the human eye using low magnification optical microscopy images and discuss the extension of this technique across multiple scales.

Implicit structured sequence learning: an fMRI study of the structural mere-exposure effect

PubMed Central

Folia, Vasiliki; Petersson, Karl Magnus

2014-01-01

In this event-related fMRI study we investigated the effect of 5 days of implicit acquisition on preference classification by means of an artificial grammar learning (AGL) paradigm based on the structural mere-exposure effect and preference classification using a simple right-linear unification grammar. This allowed us to investigate implicit AGL in a proper learning design by including baseline measurements prior to grammar exposure. After 5 days of implicit acquisition, the fMRI results showed activations in a network of brain regions including the inferior frontal (centered on BA 44/45) and the medial prefrontal regions (centered on BA 8/32). Importantly, and central to this study, the inclusion of a naive preference fMRI baseline measurement allowed us to conclude that these fMRI findings were the intrinsic outcomes of the learning process itself and not a reflection of a preexisting functionality recruited during classification, independent of acquisition. Support for the implicit nature of the knowledge utilized during preference classification on day 5 come from the fact that the basal ganglia, associated with implicit procedural learning, were activated during classification, while the medial temporal lobe system, associated with explicit declarative memory, was consistently deactivated. Thus, preference classification in combination with structural mere-exposure can be used to investigate structural sequence processing (syntax) in unsupervised AGL paradigms with proper learning designs. PMID:24550865

Implicit structured sequence learning: an fMRI study of the structural mere-exposure effect.

PubMed

Folia, Vasiliki; Petersson, Karl Magnus

2014-01-01

In this event-related fMRI study we investigated the effect of 5 days of implicit acquisition on preference classification by means of an artificial grammar learning (AGL) paradigm based on the structural mere-exposure effect and preference classification using a simple right-linear unification grammar. This allowed us to investigate implicit AGL in a proper learning design by including baseline measurements prior to grammar exposure. After 5 days of implicit acquisition, the fMRI results showed activations in a network of brain regions including the inferior frontal (centered on BA 44/45) and the medial prefrontal regions (centered on BA 8/32). Importantly, and central to this study, the inclusion of a naive preference fMRI baseline measurement allowed us to conclude that these fMRI findings were the intrinsic outcomes of the learning process itself and not a reflection of a preexisting functionality recruited during classification, independent of acquisition. Support for the implicit nature of the knowledge utilized during preference classification on day 5 come from the fact that the basal ganglia, associated with implicit procedural learning, were activated during classification, while the medial temporal lobe system, associated with explicit declarative memory, was consistently deactivated. Thus, preference classification in combination with structural mere-exposure can be used to investigate structural sequence processing (syntax) in unsupervised AGL paradigms with proper learning designs.

A Framework for Land Cover Classification Using Discrete Return LiDAR Data: Adopting Pseudo-Waveform and Hierarchical Segmentation

NASA Technical Reports Server (NTRS)

Jung, Jinha; Pasolli, Edoardo; Prasad, Saurabh; Tilton, James C.; Crawford, Melba M.

2014-01-01

Acquiring current, accurate land-use information is critical for monitoring and understanding the impact of anthropogenic activities on natural environments.Remote sensing technologies are of increasing importance because of their capability to acquire information for large areas in a timely manner, enabling decision makers to be more effective in complex environments. Although optical imagery has demonstrated to be successful for land cover classification, active sensors, such as light detection and ranging (LiDAR), have distinct capabilities that can be exploited to improve classification results. However, utilization of LiDAR data for land cover classification has not been fully exploited. Moreover, spatial-spectral classification has recently gained significant attention since classification accuracy can be improved by extracting additional information from the neighboring pixels. Although spatial information has been widely used for spectral data, less attention has been given to LiDARdata. In this work, a new framework for land cover classification using discrete return LiDAR data is proposed. Pseudo-waveforms are generated from the LiDAR data and processed by hierarchical segmentation. Spatial featuresare extracted in a region-based way using a new unsupervised strategy for multiple pruning of the segmentation hierarchy. The proposed framework is validated experimentally on a real dataset acquired in an urban area. Better classification results are exhibited by the proposed framework compared to the cases in which basic LiDAR products such as digital surface model and intensity image are used. Moreover, the proposed region-based feature extraction strategy results in improved classification accuracies in comparison with a more traditional window-based approach.

A Gaussian mixture model based adaptive classifier for fNIRS brain-computer interfaces and its testing via simulation

NASA Astrophysics Data System (ADS)

Li, Zheng; Jiang, Yi-han; Duan, Lian; Zhu, Chao-zhe

2017-08-01

Objective. Functional near infra-red spectroscopy (fNIRS) is a promising brain imaging technology for brain-computer interfaces (BCI). Future clinical uses of fNIRS will likely require operation over long time spans, during which neural activation patterns may change. However, current decoders for fNIRS signals are not designed to handle changing activation patterns. The objective of this study is to test via simulations a new adaptive decoder for fNIRS signals, the Gaussian mixture model adaptive classifier (GMMAC). Approach. GMMAC can simultaneously classify and track activation pattern changes without the need for ground-truth labels. This adaptive classifier uses computationally efficient variational Bayesian inference to label new data points and update mixture model parameters, using the previous model parameters as priors. We test GMMAC in simulations in which neural activation patterns change over time and compare to static decoders and unsupervised adaptive linear discriminant analysis classifiers. Main results. Our simulation experiments show GMMAC can accurately decode under time-varying activation patterns: shifts of activation region, expansions of activation region, and combined contractions and shifts of activation region. Furthermore, the experiments show the proposed method can track the changing shape of the activation region. Compared to prior work, GMMAC performed significantly better than the other unsupervised adaptive classifiers on a difficult activation pattern change simulation: 99% versus  <54% in two-choice classification accuracy. Significance. We believe GMMAC will be useful for clinical fNIRS-based brain-computer interfaces, including neurofeedback training systems, where operation over long time spans is required.

Deep learning-based subdivision approach for large scale macromolecules structure recovery from electron cryo tomograms

PubMed Central

Xu, Min; Chai, Xiaoqi; Muthakana, Hariank; Liang, Xiaodan; Yang, Ge; Zeev-Ben-Mordehai, Tzviya; Xing, Eric P.

2017-01-01

Abstract Motivation: Cellular Electron CryoTomography (CECT) enables 3D visualization of cellular organization at near-native state and in sub-molecular resolution, making it a powerful tool for analyzing structures of macromolecular complexes and their spatial organizations inside single cells. However, high degree of structural complexity together with practical imaging limitations makes the systematic de novo discovery of structures within cells challenging. It would likely require averaging and classifying millions of subtomograms potentially containing hundreds of highly heterogeneous structural classes. Although it is no longer difficult to acquire CECT data containing such amount of subtomograms due to advances in data acquisition automation, existing computational approaches have very limited scalability or discrimination ability, making them incapable of processing such amount of data. Results: To complement existing approaches, in this article we propose a new approach for subdividing subtomograms into smaller but relatively homogeneous subsets. The structures in these subsets can then be separately recovered using existing computation intensive methods. Our approach is based on supervised structural feature extraction using deep learning, in combination with unsupervised clustering and reference-free classification. Our experiments show that, compared with existing unsupervised rotation invariant feature and pose-normalization based approaches, our new approach achieves significant improvements in both discrimination ability and scalability. More importantly, our new approach is able to discover new structural classes and recover structures that do not exist in training data. Availability and Implementation: Source code freely available at http://www.cs.cmu.edu/∼mxu1/software. Contact: mxu1@cs.cmu.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:28881965

Information processing of motion in facial expression and the geometry of dynamical systems

NASA Astrophysics Data System (ADS)

Assadi, Amir H.; Eghbalnia, Hamid; McMenamin, Brenton W.

2005-01-01

An interesting problem in analysis of video data concerns design of algorithms that detect perceptually significant features in an unsupervised manner, for instance methods of machine learning for automatic classification of human expression. A geometric formulation of this genre of problems could be modeled with help of perceptual psychology. In this article, we outline one approach for a special case where video segments are to be classified according to expression of emotion or other similar facial motions. The encoding of realistic facial motions that convey expression of emotions for a particular person P forms a parameter space XP whose study reveals the "objective geometry" for the problem of unsupervised feature detection from video. The geometric features and discrete representation of the space XP are independent of subjective evaluations by observers. While the "subjective geometry" of XP varies from observer to observer, levels of sensitivity and variation in perception of facial expressions appear to share a certain level of universality among members of similar cultures. Therefore, statistical geometry of invariants of XP for a sample of population could provide effective algorithms for extraction of such features. In cases where frequency of events is sufficiently large in the sample data, a suitable framework could be provided to facilitate the information-theoretic organization and study of statistical invariants of such features. This article provides a general approach to encode motion in terms of a particular genre of dynamical systems and the geometry of their flow. An example is provided to illustrate the general theory.

[Analysis of vegetation spatial and temporal variations in Qinghai Province based on remote sensing].

PubMed

Wang, Li-wen; Wei, Ya-xing; Niu, Zheng

2008-06-01

1 km MODIS NDVI time series data combining with decision tree classification, supervised classification and unsupervised classification was used to classify land cover type of Qinghai Province into 14 classes. In our classification system, sparse grassland and sparse shrub were emphasized, and their spatial distribution locations were labeled. From digital elevation model (DEM) of Qinghai Province, five elevation belts were achieved, and we utilized geographic information system (GIS) software to analyze vegetation cover variation on different elevation belts. Our research result shows that vegetation cover in Qinghai Province has been improved in recent five years. Vegetation cover area increases from 370047 km2 in 2001 to 374576 km2 in 2006, and vegetation cover rate increases by 0.63%. Among five grade elevation belts, vegetation cover ratio of high mountain belt is the highest (67.92%). The area of middle density grassland in high mountain belt is the largest, of which area is 94 003 km2. Increased area of dense grassland in high mountain belt is the greatest (1280 km2). During five years, the biggest variation is the conversion from sparse grassland to middle density grassland in high mountain belt, of which area is 15931 km2.

Automatic age and gender classification using supervised appearance model

NASA Astrophysics Data System (ADS)

Bukar, Ali Maina; Ugail, Hassan; Connah, David

2016-11-01

Age and gender classification are two important problems that recently gained popularity in the research community, due to their wide range of applications. Research has shown that both age and gender information are encoded in the face shape and texture, hence the active appearance model (AAM), a statistical model that captures shape and texture variations, has been one of the most widely used feature extraction techniques for the aforementioned problems. However, AAM suffers from some drawbacks, especially when used for classification. This is primarily because principal component analysis (PCA), which is at the core of the model, works in an unsupervised manner, i.e., PCA dimensionality reduction does not take into account how the predictor variables relate to the response (class labels). Rather, it explores only the underlying structure of the predictor variables, thus, it is no surprise if PCA discards valuable parts of the data that represent discriminatory features. Toward this end, we propose a supervised appearance model (sAM) that improves on AAM by replacing PCA with partial least-squares regression. This feature extraction technique is then used for the problems of age and gender classification. Our experiments show that sAM has better predictive power than the conventional AAM.

QUEST: Eliminating Online Supervised Learning for Efficient Classification Algorithms.

PubMed

Zwartjes, Ardjan; Havinga, Paul J M; Smit, Gerard J M; Hurink, Johann L

2016-10-01

In this work, we introduce QUEST (QUantile Estimation after Supervised Training), an adaptive classification algorithm for Wireless Sensor Networks (WSNs) that eliminates the necessity for online supervised learning. Online processing is important for many sensor network applications. Transmitting raw sensor data puts high demands on the battery, reducing network life time. By merely transmitting partial results or classifications based on the sampled data, the amount of traffic on the network can be significantly reduced. Such classifications can be made by learning based algorithms using sampled data. An important issue, however, is the training phase of these learning based algorithms. Training a deployed sensor network requires a lot of communication and an impractical amount of human involvement. QUEST is a hybrid algorithm that combines supervised learning in a controlled environment with unsupervised learning on the location of deployment. Using the SITEX02 dataset, we demonstrate that the presented solution works with a performance penalty of less than 10% in 90% of the tests. Under some circumstances, it even outperforms a network of classifiers completely trained with supervised learning. As a result, the need for on-site supervised learning and communication for training is completely eliminated by our solution.

Extracting galactic structure parameters from multivariated density estimation

NASA Technical Reports Server (NTRS)

Chen, B.; Creze, M.; Robin, A.; Bienayme, O.

1992-01-01

Multivariate statistical analysis, including includes cluster analysis (unsupervised classification), discriminant analysis (supervised classification) and principle component analysis (dimensionlity reduction method), and nonparameter density estimation have been successfully used to search for meaningful associations in the 5-dimensional space of observables between observed points and the sets of simulated points generated from a synthetic approach of galaxy modelling. These methodologies can be applied as the new tools to obtain information about hidden structure otherwise unrecognizable, and place important constraints on the space distribution of various stellar populations in the Milky Way. In this paper, we concentrate on illustrating how to use nonparameter density estimation to substitute for the true densities in both of the simulating sample and real sample in the five-dimensional space. In order to fit model predicted densities to reality, we derive a set of equations which include n lines (where n is the total number of observed points) and m (where m: the numbers of predefined groups) unknown parameters. A least-square estimation will allow us to determine the density law of different groups and components in the Galaxy. The output from our software, which can be used in many research fields, will also give out the systematic error between the model and the observation by a Bayes rule.

Automated and unsupervised detection of malarial parasites in microscopic images.

PubMed

Purwar, Yashasvi; Shah, Sirish L; Clarke, Gwen; Almugairi, Areej; Muehlenbachs, Atis

2011-12-13

Malaria is a serious infectious disease. According to the World Health Organization, it is responsible for nearly one million deaths each year. There are various techniques to diagnose malaria of which manual microscopy is considered to be the gold standard. However due to the number of steps required in manual assessment, this diagnostic method is time consuming (leading to late diagnosis) and prone to human error (leading to erroneous diagnosis), even in experienced hands. The focus of this study is to develop a robust, unsupervised and sensitive malaria screening technique with low material cost and one that has an advantage over other techniques in that it minimizes human reliance and is, therefore, more consistent in applying diagnostic criteria. A method based on digital image processing of Giemsa-stained thin smear image is developed to facilitate the diagnostic process. The diagnosis procedure is divided into two parts; enumeration and identification. The image-based method presented here is designed to automate the process of enumeration and identification; with the main advantage being its ability to carry out the diagnosis in an unsupervised manner and yet have high sensitivity and thus reducing cases of false negatives. The image based method is tested over more than 500 images from two independent laboratories. The aim is to distinguish between positive and negative cases of malaria using thin smear blood slide images. Due to the unsupervised nature of method it requires minimal human intervention thus speeding up the whole process of diagnosis. Overall sensitivity to capture cases of malaria is 100% and specificity ranges from 50-88% for all species of malaria parasites. Image based screening method will speed up the whole process of diagnosis and is more advantageous over laboratory procedures that are prone to errors and where pathological expertise is minimal. Further this method provides a consistent and robust way of generating the parasite clearance curves.

Simultaneous Profiling of Lysoglycerophospholipids in Rice (Oryza sativa L.) Using Direct Infusion-Tandem Mass Spectrometry with Multiple Reaction Monitoring.

PubMed

Lim, Dong Kyu; Mo, Changyeun; Long, Nguyen Phuoc; Kim, Giyoung; Kwon, Sung Won

2017-03-29

White rice is the final product after the hull and bran layers have been removed during the milling process. Although lysoglycerophospholipids (lysoGPLs) only occupy a small proportion in white rice, they are essential for evaluating rice authenticity and quality. In this study, we developed a high-throughput and targeted lipidomics approach that involved direct infusion-tandem mass spectrometry with multiple reaction monitoring to simultaneously profile lysoGPLs in white rice. The method is capable of characterizing 17 lysoGPLs within 1 min. In addition, unsupervised and supervised analyses exhibited a considerably large diversity of lysoGPL concentrations in white rice from different origins. In particular, a classification model was built using identified lysoGPLs that can differentiate white rice from Korea, China, and Japan. Among the discriminatory lysoGPLs, for the lysoPE(16:0) and lysoPE(18:2) compositions, there were relatively small within-group variations, and they were considerably different among the three countries. In conclusion, our proposed method provides a rapid, high-throughput, and comprehensive format for profiling lysoGPLs in rice samples.

Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions.

PubMed

Mrabet, Yassine; Kilicoglu, Halil; Roberts, Kirk; Demner-Fushman, Dina

2016-01-01

Determining the main topics in consumer health questions is a crucial step in their processing as it allows narrowing the search space to a specific semantic context. In this paper we propose a topic recognition approach based on biomedical and open-domain knowledge bases. In the first step of our method, we recognize named entities in consumer health questions using an unsupervised method that relies on a biomedical knowledge base, UMLS, and an open-domain knowledge base, DBpedia. In the next step, we cast topic recognition as a binary classification problem of deciding whether a named entity is the question topic or not. We evaluated our approach on a dataset from the National Library of Medicine (NLM), introduced in this paper, and another from the Genetic and Rare Disease Information Center (GARD). The combination of knowledge bases outperformed the results obtained by individual knowledge bases by up to 16.5% F1 and achieved state-of-the-art performance. Our results demonstrate that combining open-domain knowledge bases with biomedical knowledge bases can lead to a substantial improvement in understanding user-generated health content.

An illustration of new methods in machine condition monitoring, Part I: stochastic resonance

NASA Astrophysics Data System (ADS)

Worden, K.; Antoniadou, I.; Marchesiello, S.; Mba, C.; Garibaldi, L.

2017-05-01

There have been many recent developments in the application of data-based methods to machine condition monitoring. A powerful methodology based on machine learning has emerged, where diagnostics are based on a two-step procedure: extraction of damage-sensitive features, followed by unsupervised learning (novelty detection) or supervised learning (classification). The objective of the current pair of papers is simply to illustrate one state-of-the-art procedure for each step, using synthetic data representative of reality in terms of size and complexity. The first paper in the pair will deal with feature extraction. Although some papers have appeared in the recent past considering stochastic resonance as a means of amplifying damage information in signals, they have largely relied on ad hoc specifications of the resonator used. In contrast, the current paper will adopt a principled optimisation-based approach to the resonator design. The paper will also show that a discrete dynamical system can provide all the benefits of a continuous system, but also provide a considerable speed-up in terms of simulation time in order to facilitate the optimisation approach.

Deep-Learning-Based Drug-Target Interaction Prediction.

PubMed

Wen, Ming; Zhang, Zhimin; Niu, Shaoyu; Sha, Haozhi; Yang, Ruihan; Yun, Yonghuan; Lu, Hongmei

2017-04-07

Identifying interactions between known drugs and targets is a major challenge in drug repositioning. In silico prediction of drug-target interaction (DTI) can speed up the expensive and time-consuming experimental work by providing the most potent DTIs. In silico prediction of DTI can also provide insights about the potential drug-drug interaction and promote the exploration of drug side effects. Traditionally, the performance of DTI prediction depends heavily on the descriptors used to represent the drugs and the target proteins. In this paper, to accurately predict new DTIs between approved drugs and targets without separating the targets into different classes, we developed a deep-learning-based algorithmic framework named DeepDTIs. It first abstracts representations from raw input descriptors using unsupervised pretraining and then applies known label pairs of interaction to build a classification model. Compared with other methods, it is found that DeepDTIs reaches or outperforms other state-of-the-art methods. The DeepDTIs can be further used to predict whether a new drug targets to some existing targets or whether a new target interacts with some existing drugs.

Exploring high dimensional data with Butterfly: a novel classification algorithm based on discrete dynamical systems.

PubMed

Geraci, Joseph; Dharsee, Moyez; Nuin, Paulo; Haslehurst, Alexandria; Koti, Madhuri; Feilotter, Harriet E; Evans, Ken

2014-03-01

We introduce a novel method for visualizing high dimensional data via a discrete dynamical system. This method provides a 2D representation of the relationship between subjects according to a set of variables without geometric projections, transformed axes or principal components. The algorithm exploits a memory-type mechanism inherent in a certain class of discrete dynamical systems collectively referred to as the chaos game that are closely related to iterative function systems. The goal of the algorithm was to create a human readable representation of high dimensional patient data that was capable of detecting unrevealed subclusters of patients from within anticipated classifications. This provides a mechanism to further pursue a more personalized exploration of pathology when used with medical data. For clustering and classification protocols, the dynamical system portion of the algorithm is designed to come after some feature selection filter and before some model evaluation (e.g. clustering accuracy) protocol. In the version given here, a univariate features selection step is performed (in practice more complex feature selection methods are used), a discrete dynamical system is driven by this reduced set of variables (which results in a set of 2D cluster models), these models are evaluated for their accuracy (according to a user-defined binary classification) and finally a visual representation of the top classification models are returned. Thus, in addition to the visualization component, this methodology can be used for both supervised and unsupervised machine learning as the top performing models are returned in the protocol we describe here. Butterfly, the algorithm we introduce and provide working code for, uses a discrete dynamical system to classify high dimensional data and provide a 2D representation of the relationship between subjects. We report results on three datasets (two in the article; one in the appendix) including a public lung cancer dataset that comes along with the included Butterfly R package. In the included R script, a univariate feature selection method is used for the dimension reduction step, but in the future we wish to use a more powerful multivariate feature reduction method based on neural networks (Kriesel, 2007). A script written in R (designed to run on R studio) accompanies this article that implements this algorithm and is available at http://butterflygeraci.codeplex.com/. For details on the R package or for help installing the software refer to the accompanying document, Supporting Material and Appendix.

Segmentation, Splitting, and Classification of Overlapping Bacteria in Microscope Images for Automatic Bacterial Vaginosis Diagnosis.

PubMed

Song, Youyi; He, Liang; Zhou, Feng; Chen, Siping; Ni, Dong; Lei, Baiying; Wang, Tianfu

2017-07-01

Quantitative analysis of bacterial morphotypes in the microscope images plays a vital role in diagnosis of bacterial vaginosis (BV) based on the Nugent score criterion. However, there are two main challenges for this task: 1) It is quite difficult to identify the bacterial regions due to various appearance, faint boundaries, heterogeneous shapes, low contrast with the background, and small bacteria sizes with regards to the image. 2) There are numerous bacteria overlapping each other, which hinder us to conduct accurate analysis on individual bacterium. To overcome these challenges, we propose an automatic method in this paper to diagnose BV by quantitative analysis of bacterial morphotypes, which consists of a three-step approach, i.e., bacteria regions segmentation, overlapping bacteria splitting, and bacterial morphotypes classification. Specifically, we first segment the bacteria regions via saliency cut, which simultaneously evaluates the global contrast and spatial weighted coherence. And then Markov random field model is applied for high-quality unsupervised segmentation of small object. We then decompose overlapping bacteria clumps into markers, and associate a pixel with markers to identify evidence for eventual individual bacterium splitting. Next, we extract morphotype features from each bacterium to learn the descriptors and to characterize the types of bacteria using an Adaptive Boosting machine learning framework. Finally, BV diagnosis is implemented based on the Nugent score criterion. Experiments demonstrate that our proposed method achieves high accuracy and efficiency in computation for BV diagnosis.

Image fusion using sparse overcomplete feature dictionaries

DOEpatents

Brumby, Steven P.; Bettencourt, Luis; Kenyon, Garrett T.; Chartrand, Rick; Wohlberg, Brendt

2015-10-06

Approaches for deciding what individuals in a population of visual system "neurons" are looking for using sparse overcomplete feature dictionaries are provided. A sparse overcomplete feature dictionary may be learned for an image dataset and a local sparse representation of the image dataset may be built using the learned feature dictionary. A local maximum pooling operation may be applied on the local sparse representation to produce a translation-tolerant representation of the image dataset. An object may then be classified and/or clustered within the translation-tolerant representation of the image dataset using a supervised classification algorithm and/or an unsupervised clustering algorithm.

Walking back the cat: Unsupervised classification as an aid in "remote" fossil prospecting.

PubMed

Conroy, Glenn C

2014-01-01

Counterintelligence analysts use a technique called "walking back the cat'' to reveal "moles" or others passing on disinformation in which they compare what they now know as fact against what their agents or informers had told them to expect about certain persons or events. Thus, "walking back the cat" is a perfect metaphor for working backwards; that is, retracing the complex development of an event and examining the "run up" to it in order to gain useful insights about how that event unfolded. Perhaps paleoanthropology can profit from such an approach. © 2014 Wiley Periodicals, Inc.

Identification of sea ice types in spaceborne synthetic aperture radar data

NASA Technical Reports Server (NTRS)

Kwok, Ronald; Rignot, Eric; Holt, Benjamin; Onstott, R.

1992-01-01

This study presents an approach for identification of sea ice types in spaceborne SAR image data. The unsupervised classification approach involves cluster analysis for segmentation of the image data followed by cluster labeling based on previously defined look-up tables containing the expected backscatter signatures of different ice types measured by a land-based scatterometer. Extensive scatterometer observations and experience accumulated in field campaigns during the last 10 yr were used to construct these look-up tables. The classification approach, its expected performance, the dependence of this performance on radar system performance, and expected ice scattering characteristics are discussed. Results using both aircraft and simulated ERS-1 SAR data are presented and compared to limited field ice property measurements and coincident passive microwave imagery. The importance of an integrated postlaunch program for the validation and improvement of this approach is discussed.

Mapping forest vegetation with ERTS-1 MSS data and automatic data processing techniques

NASA Technical Reports Server (NTRS)

Messmore, J.; Copeland, G. E.; Levy, G. F.

1975-01-01

This study was undertaken with the intent of elucidating the forest mapping capabilities of ERTS-1 MSS data when analyzed with the aid of LARS' automatic data processing techniques. The site for this investigation was the Great Dismal Swamp, a 210,000 acre wilderness area located on the Middle Atlantic coastal plain. Due to inadequate ground truth information on the distribution of vegetation within the swamp, an unsupervised classification scheme was utilized. Initially pictureprints, resembling low resolution photographs, were generated in each of the four ERTS-1 channels. Data found within rectangular training fields was then clustered into 13 spectral groups and defined statistically. Using a maximum likelihood classification scheme, the unknown data points were subsequently classified into one of the designated training classes. Training field data was classified with a high degree of accuracy (greater than 95%), and progress is being made towards identifying the mapped spectral classes.

Mapping forest vegetation with ERTS-1 MSS data and automatic data processing techniques

NASA Technical Reports Server (NTRS)

Messmore, J.; Copeland, G. E.; Levy, G. F.

1975-01-01

This study was undertaken with the intent of elucidating the forest mapping capabilities of ERTS-1 MSS data when analyzed with the aid of LARS' automatic data processing techniques. The site for this investigation was the Great Dismal Swamp, a 210,000 acre wilderness area located on the Middle Atlantic coastal plain. Due to inadequate ground truth information on the distribution of vegetation within the swamp, an unsupervised classification scheme was utilized. Initially pictureprints, resembling low resolution photographs, were generated in each of the four ERTS-1 channels. Data found within rectangular training fields was then clustered into 13 spectral groups and defined statistically. Using a maximum likelihood classification scheme, the unknown data points were subsequently classified into one of the designated training classes. Training field data was classified with a high degree of accuracy (greater than 95 percent), and progress is being made towards identifying the mapped spectral classes.

Constructing and Deconstructing Concepts.

PubMed

Doan, Charles A; Vigo, Ronaldo

2016-09-01

Several empirical investigations have explored whether observers prefer to sort sets of multidimensional stimuli into groups by employing one-dimensional or family-resemblance strategies. Although one-dimensional sorting strategies have been the prevalent finding for these unsupervised classification paradigms, several researchers have provided evidence that the choice of strategy may depend on the particular demands of the task. To account for this disparity, we propose that observers extract relational patterns from stimulus sets that facilitate the development of optimal classification strategies for relegating category membership. We conducted a novel constrained categorization experiment to empirically test this hypothesis by instructing participants to either add or remove objects from presented categorical stimuli. We employed generalized representational information theory (GRIT; Vigo, 2011b , 2013a , 2014 ) and its associated formal models to predict and explain how human beings chose to modify these categorical stimuli. Additionally, we compared model performance to predictions made by a leading prototypicality measure in the literature.

Effective implementation of hierarchical clustering

NASA Astrophysics Data System (ADS)

Verma, Mudita; Vijayarajan, V.; Sivashanmugam, G.; Bessie Amali, D. Geraldine

2017-11-01

Hierarchical clustering is generally used for cluster analysis in which we build up a hierarchy of clusters. In order to find that which cluster should be split a large amount of observations are being carried out. Here the data set of US based personalities has been considered for clustering. After implementation of hierarchical clustering on the data set we group it in three different clusters one is of politician, sports person and musicians. Training set is the main parameter which decides the category which has to be assigned to the observations that are being collected. The category of these observations must be known. Recognition comes from the formulation of classification. Supervised learning has the main instance in the form of classification. While on the other hand Clustering is an instance of unsupervised procedure. Clustering consists of grouping of data that have similar properties which are either their own or are inherited from some other sources.

Authentication of Trappist beers by LC-MS fingerprints and multivariate data analysis.

PubMed

Mattarucchi, Elia; Stocchero, Matteo; Moreno-Rojas, José Manuel; Giordano, Giuseppe; Reniero, Fabiano; Guillou, Claude

2010-12-08

The aim of this study was to asses the applicability of LC-MS profiling to authenticate a selected Trappist beer as part of a program on traceability funded by the European Commission. A total of 232 beers were fingerprinted and classified through multivariate data analysis. The selected beer was clearly distinguished from beers of different brands, while only 3 samples (3.5% of the test set) were wrongly classified when compared with other types of beer of the same Trappist brewery. The fingerprints were further analyzed to extract the most discriminating variables, which proved to be sufficient for classification, even using a simplified unsupervised model. This reduced fingerprint allowed us to study the influence of batch-to-batch variability on the classification model. Our results can easily be applied to different matrices and they confirmed the effectiveness of LC-MS profiling in combination with multivariate data analysis for the characterization of food products.

Spectral signature selection for mapping unvegetated soils

NASA Technical Reports Server (NTRS)

May, G. A.; Petersen, G. W.

1975-01-01

Airborne multispectral scanner data covering the wavelength interval from 0.40-2.60 microns were collected at an altitude of 1000 m above the terrain in southeastern Pennsylvania. Uniform training areas were selected within three sites from this flightline. Soil samples were collected from each site and a procedure developed to allow assignment of scan line and element number from the multispectral scanner data to each sampling location. These soil samples were analyzed on a spectrophotometer and laboratory spectral signatures were derived. After correcting for solar radiation and atmospheric attenuation, the laboratory signatures were compared to the spectral signatures derived from these same soils using multispectral scanner data. Both signatures were used in supervised and unsupervised classification routines. Computer-generated maps using the laboratory and multispectral scanner derived signatures resulted in maps that were similar to maps resulting from field surveys. Approximately 90% agreement was obtained between classification maps produced using multispectral scanner derived signatures and laboratory derived signatures.

Classification-free threat detection based on material-science-informed clustering

NASA Astrophysics Data System (ADS)

Yuan, Siyang; Wolter, Scott D.; Greenberg, Joel A.

2017-05-01

X-ray diffraction (XRD) is well-known for yielding composition and structural information about a material. However, in some applications (such as threat detection in aviation security), the properties of a material are more relevant to the task than is a detailed material characterization. Furthermore, the requirement that one first identify a material before determining its class may be difficult or even impossible for a sufficiently large pool of potentially present materials. We therefore seek to learn relevant composition-structure-property relationships between materials to enable material-identification-free classification. We use an expert-informed, data-driven approach operating on a library of XRD spectra from a broad array of stream of commerce materials. We investigate unsupervised learning techniques in order to learn about naturally emergent groupings, and apply supervised learning techniques to determine how well XRD features can be used to separate user-specified classes in the presence of different types and degrees of signal degradation.