Marshes on the Move: Testing effects of seawater intrusion on ...

EPA Pesticide Factsheets

The Northeastern United States is a hotspot for sea level rise (SLR), subjecting coastal salt marshes to erosive loss, shifts in vegetation communities, and altered biogeochemistry due to seawater intrusion. Salt marsh plant community zonation is driven by tradeoffs in stress tolerance and interspecific interactions. As seawater inundates progressively higher marsh elevations, shifts in marsh vegetation communities landward may herald salt marsh “migration”, which could allow continuity of marsh function and ecosystem service provision. To elucidate possible effects of seawater intrusion on marsh-upland edge plant communities, a space-for-time approach was replicated at two Rhode Island salt marshes. At each site, peat blocks (0.5 m x 0.5 m x 0.5 m, n=6) with intact upland-marsh edge vegetation were transplanted downslope into the regularly-inundated mid-marsh. Procedural controls (n=3) were established at each elevation by removing and replacing peat blocks, and natural controls (n=3) consisted of undisturbed plots. During peak productivity, each plot was assessed for species composition, percent cover and average height. Results demonstrate stunting of marsh-upland edge vegetation in response to increased inundation, and the beginnings of colonization of the transplanted plots by salt marsh species. The extent of colonization differed between the two sites, suggesting that site-specific factors govern vegetation responses to increased inundation.

Marshes on the Move: Testing effects of seawater intrusion on vegetation communities of the salt marsh-upland ecotone

EPA Science Inventory

The Northeastern United States is a hotspot for sea level rise (SLR), subjecting coastal salt marshes to erosive loss, shifts in vegetation communities, and altered biogeochemistry due to seawater intrusion. Salt marsh plant community zonation is driven by tradeoffs in stress to...

CLASSIFICATION, PROTECTION, AND MONITORING OF NONTIDAL FLOODPLAIN FOREST COMMUNITIES

EPA Science Inventory

New Jersey,s floodplain forests (FFs) contain 57 rare plant species, 25 of which are State Endangered. The acreage of FF has been substantially reduced over the past 200 years, and upland buffers have also been diminished. Threats to FF communities include stream degradation, ...

Effects of past logging and grazing on understory plant communities in a montane Colorado forest

USGS Publications Warehouse

Fornwalt, P.J.; Kaufmann, M.R.; Huckaby, L.S.; Stohlgren, T.J.

2009-01-01

Throughout Pinus ponderosa-Pseudotsuga menziesii forests of the southern Colorado Front Range, USA, intense logging and domestic grazing began at the time of Euro-American settlement in the late 1800s and continued until the early 1900s. We investigated the long-term impacts of these settlement-era activities on understory plant communities by comparing understory composition at a historically logged and grazed site to that of an environmentally similar site which was protected from past use. We found that species richness and cover within functional groups rarely differed between sites in either upland or riparian areas. Multivariate analyses revealed little difference in species composition between sites on uplands, though compositional differences were apparent in riparian zones. Our findings suggest that settlement-era logging and grazing have had only minor long-term impacts on understories of upland Front Range P. ponderosa-P. menziesii forests, though they have had a greater long-term influence on riparian understories, where these activities were likely the most intense. ?? 2008 Springer Science+Business Media B.V.

Pattern recognition of native plant communities: Manitou Colorado test site

NASA Technical Reports Server (NTRS)

Driscoll, R. S.

1972-01-01

Optimum channel selection among 12 channels of multispectral scanner imagery identified six as providing the best information about 11 vegetation classes and two nonvegetation classes at the Manitou Experimental Forest. Intensive preprocessing of the scanner signals was required to eliminate a serious scan angle effect. Final processing of the normalized data provided acceptable recognition results of generalized plant community types. Serious errors occurred with attempts to classify specific community types within upland grassland areas. The consideration of the convex mixtures concept (effects of amounts of live plant cover, exposed soil, and plant litter cover on apparent scene radiances) significantly improved the classification of some of the grassland classes.

THE MAJOR COASTAL COMMUNITIES OF NORTH CAROLINA.

ERIC Educational Resources Information Center

Marine Science Project, Beaufort, NC.

IDENTIFIED IN THIS MARINE SCIENCE HANDBOOK ARE 5 MAJOR TYPES OF NATURAL HABITATS--(1) OPEN BEACH AND ANY OTHER SEAWARD-FACING, UNPROTECTED STRAND, (2) GROINS, JETTIES, PILINGS, AND ROCK BULKHEADS, (3) SAND AND/OR MUD FLAT, (4) SALT MARSH, AND (5) UPLAND COMMUNITIES. EACH HABITAT IS DESCRIBED IN TERMS OF TYPICAL PLANTS AND ANIMALS, ADAPTATIONS, AND…

Ecosystem response to removal of exotic riparian shrubs and a transition to upland vegetation

USGS Publications Warehouse

Reynolds, Lindsay V.; Cooper, David J.

2011-01-01

Understanding plant community change over time is essential for managing important ecosystems such as riparian areas. This study analyzed historic vegetation using soil seed banks and the effects of riparian shrub removal treatments and channel incision on ecosystem and plant community dynamics in Canyon de Chelly National Monument, Arizona. We focused on how seeds, nutrients, and ground water influence the floristic composition of post-treatment vegetation and addressed three questions: (1) How does pre-treatment soil seed bank composition reflect post-treatment vegetation composition? (2) How does shrub removal affect post-treatment riparian vegetation composition, seed rain inputs, and ground water dynamics? and (3) Is available soil nitrogen increased near dead Russian olive plants following removal and does this influence post-treatment vegetation? We analyzed seed bank composition across the study area, analyzed differences in vegetation, ground water levels, and seed rain between control, cut-stump and whole-plant removal areas, and compared soil nitrogen and vegetation near removed Russian olive to areas lacking Russian olive. The soil seed bank contained more riparian plants, more native and fewer exotic plants than the extant vegetation. Both shrub removal methods decreased exotic plant cover, decreased tamarisk and Russian olive seed inputs, and increased native plant cover after 2 years. Neither method increased ground water levels. Soil near dead Russian olive trees indicated a short-term increase in soil nitrogen following plant removal but did not influence vegetation composition compared to areas without Russian olive. Following tamarisk and Russian olive removal, our study sites were colonized by upland plant species. Many western North American rivers have tamarisk and Russian olive on floodplains abandoned by channel incision, river regulation or both. Our results are widely applicable to sites where drying has occurred and vegetation establishment following shrub removal is likely to be by upland species.

High-Resolution Coproecology: Using Coprolites to Reconstruct the Habits and Habitats of New Zealand’s Extinct Upland Moa (Megalapteryx didinus)

PubMed Central

Wood, Jamie R.; Wilmshurst, Janet M.; Wagstaff, Steven J.; Worthy, Trevor H.; Rawlence, Nicolas J.; Cooper, Alan

2012-01-01

Knowledge about the diet and ecology of extinct herbivores has important implications for understanding the evolution of plant defence structures, establishing the influences of herbivory on past plant community structure and composition, and identifying pollination and seed dispersal syndromes. The flightless ratite moa (Aves: Dinornithiformes) were New Zealand’s largest herbivores prior to their extinction soon after initial human settlement. Here we contribute to the knowledge of moa diet and ecology by reporting the results of a multidisciplinary study of 35 coprolites from a subalpine cave (Euphrates Cave) on the South Island of New Zealand. Ancient DNA analysis and radiocarbon dating revealed the coprolites were deposited by the extinct upland moa (Megalapteryx didinus), and span from at least 6,368±31 until 694±30 14C years BP; the approximate time of their extinction. Using pollen, plant macrofossil, and ancient DNA analyses, we identified at least 67 plant taxa from the coprolites, including the first evidence that moa fed on the nectar-rich flowers of New Zealand flax (Phormium) and tree fuchsia (Fuchsia excorticata). The plant assemblage from the coprolites reflects a highly-generalist feeding ecology for upland moa, including browsing and grazing across the full range of locally available habitats (spanning southern beech (Nothofagus) forest to tussock (Chionochloa) grassland). Intact seeds in the coprolites indicate that upland moa may have been important dispersal agents for several plant taxa. Plant taxa with putative anti-browse adaptations were also identified in the coprolites. Clusters of coprolites (based on pollen assemblages, moa haplotypes, and radiocarbon dates), probably reflect specimens deposited at the same time by individual birds, and reveal the necessity of suitably large sample sizes in coprolite studies to overcome potential biases in diet interpretation. PMID:22768206

Weather variability and adaptive management for rangeland restoration

USDA-ARS?s Scientific Manuscript database

Inherent weather variability in upland rangeland systems requires relatively long-term goal setting, and contingency planning for partial success or failure in any given year. Rangeland plant communities are dynamic systems and successional planning is essential for achieving and maintaining system...

9 CFR 146.52 - Participation.

Code of Federal Regulations, 2013 CFR

2013-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.52 Participation. (a) Participating commercial upland game bird slaughter plants, commercial waterfowl slaughter plants, raised-for-release upland game bird premises, and raised-for-release...

9 CFR 146.52 - Participation.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.52 Participation. (a) Participating commercial upland game bird slaughter plants, commercial waterfowl slaughter plants, raised-for-release upland game bird premises, and raised-for-release...

9 CFR 146.52 - Participation.

Code of Federal Regulations, 2014 CFR

2014-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.52 Participation. (a) Participating commercial upland game bird slaughter plants, commercial waterfowl slaughter plants, raised-for-release upland game bird premises, and raised-for-release...

9 CFR 146.52 - Participation.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.52 Participation. (a) Participating commercial upland game bird slaughter plants, commercial waterfowl slaughter plants, raised-for-release upland game bird premises, and raised-for-release...

9 CFR 146.52 - Participation.

Code of Federal Regulations, 2010 CFR

2010-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.52 Participation. (a) Participating commercial upland game bird slaughter plants, commercial waterfowl slaughter plants, raised-for-release upland game bird premises, and raised-for-release...

9 CFR 146.51 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.51 Definitions. Commercial upland game bird slaughter plant. A commercial upland game bird slaughter plant that is federally inspected or under State inspection that the U.S...

9 CFR 146.51 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.51 Definitions. Commercial upland game bird slaughter plant. A commercial upland game bird slaughter plant that is federally inspected or under State inspection that the U.S...

9 CFR 146.51 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.51 Definitions. Commercial upland game bird slaughter plant. A commercial upland game bird slaughter plant that is federally inspected or under State inspection that the U.S...

9 CFR 146.51 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.51 Definitions. Commercial upland game bird slaughter plant. A commercial upland game bird slaughter plant that is federally inspected or under State inspection that the U.S...

9 CFR 146.51 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-01-01

... Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.51 Definitions. Commercial upland game bird slaughter plant. A commercial upland game bird slaughter plant that is federally inspected or under State inspection that the U.S...

Livestock Grazing as a Driver of Vernal Pool Ecohydrology

NASA Astrophysics Data System (ADS)

Michaels, J.; McCarten, N. F.

2017-12-01

Vernal pools are seasonal wetlands that host rare plant communities of high conservation priority. Plant community composition is largely driven by pool hydroperiod. A previous study found that vernal pools grazed by livestock had longer hydroperiods compared with pools excluded from grazing for 10 years, and suggests that livestock grazing can be used to protect plant diversity. It is important to assess whether observed differences are due to the grazing or due to water balance variables including upland discharge into or out of the pools since no a priori measurements were made of the hydrology prior to grazing. To address this question, in 2016 we compared 15 pools that have been grazed continuously and 15 pools that have been fenced off for over 40 years at a site in Sacramento County. We paired pools based on abiotic characteristics (size, shape, slope, soil type) to minimize natural variation. We sampled vegetation and water depth using Solinst level loggers. We found that plant diversity and average hydroperiod was significantly higher in the grazed pools. We are currently measuring groundwater connectivity and upland inputs in order to compare the relative strength of livestock grazing as a driver of hydroperiod to these other drivers.

Vegetation survey of Pen Branch and Four Mile Creek wetlands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

One hundred-fifty plots were recently sampled (vegetational sampling study) at the Savannah River Site (SRS). An extensive characterization of the vascular flora, in four predetermined strata (overstory, Understory, shrub layer, and ground cover), was undertaken to determine dominance, co-dominance, and the importance value (I.V.) of each species. These results will be used by the Savannah River Laboratory (SRL) to evaluate the environmental status of Four Mile Creek, Pen Branch, and two upland pine stands. Objectives of this study were to: Describe in detail the plant communities previously mapped with reference to the topography and drainage, including species of plants present:more » Examine the successional trends within each sampling area and describe the extent to which current vegetation communities have resulted from specific earlier vegetation disturbances (e.g., logging and grazing); describe in detail the botanical field techniques used to sample the flora; describe the habitat and location of protected and/or rare species of plants; and collect and prepare plant species as herbarium quality specimens. Sampling was conducted at Four Mile Creek and Pen Branch, and in two upland pine plantations of different age growth.« less

Vegetation survey of Pen Branch and Four Mile Creek wetlands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1992-01-01

One hundred-fifty plots were recently sampled (vegetational sampling study) at the Savannah River Site (SRS). An extensive characterization of the vascular flora, in four predetermined strata (overstory, Understory, shrub layer, and ground cover), was undertaken to determine dominance, co-dominance, and the importance value (I.V.) of each species. These results will be used by the Savannah River Laboratory (SRL) to evaluate the environmental status of Four Mile Creek, Pen Branch, and two upland pine stands. Objectives of this study were to: Describe in detail the plant communities previously mapped with reference to the topography and drainage, including species of plants present:more » Examine the successional trends within each sampling area and describe the extent to which current vegetation communities have resulted from specific earlier vegetation disturbances (e.g., logging and grazing); describe in detail the botanical field techniques used to sample the flora; describe the habitat and location of protected and/or rare species of plants; and collect and prepare plant species as herbarium quality specimens. Sampling was conducted at Four Mile Creek and Pen Branch, and in two upland pine plantations of different age growth.« less

The transition from riparian to upland forest plant communities on headwater streams in the southern Sierra Nevada, California, United States

Treesearch

Christopher R. Dolanc; Carolyn T. Hunsaker

2017-01-01

Abstract. Fixed-width buffer zones on rivers and streams are designed to protect the diverse riparian community and its important function in the ecosystem. However, recent data suggest that riparian areas of some western forests have become more fire prone because of restrictions on fuel reduction treatments within buffer zones....

GROUND WATER/SURFACE WATER INTERACTIONS IN A GREAT BASIN WET MEADOW ECOSYSTEM

EPA Science Inventory

Riparian corridors within upland watersheds of the Great Basin locally contain wet meadow ecosystems that support much of the region's biodiversity. Plant communities in these riparian and wet meadow ecosystems can be highly dependent on the depth to and fluctuations in the water...

Relationships between soil microbial communities and soil carbon turnover along a vegetation and moisture gradient in interior Alaska

NASA Astrophysics Data System (ADS)

Waldrop, M. P.; Harden, J. W.; Turetsky, M. R.; Petersen, D. G.; McGuire, A. D.; Briones, M. J.; Churchill, A. C.; Doctor, D. H.; Pruett, L. E.

2010-12-01

Boreal landscapes are characterized by a mosaic of uplands and lowlands, which differ in plant species composition, litter biochemistry, and biogeochemical cycling rates. Boreal ecosystems, from upland black spruce stands to lowland fens, are structured largely by water table position and contain quantitatively and qualitatively different forms of soil organic matter. Differences in carbon (C) availability among ecosystems likely translate to differences in the structure of soil microbial communities, which in turn could affect rates of organic matter decomposition and turnover. We examined relationships between microbial communities and soil C turnover in near-surface soils along a topographic soil moisture and vegetation gradient in interior Alaska. We tested the hypothesis that upland black spruce sites would be dominated by soil fungi and have slow rates of C turnover, whereas lowland ecosystems would be dominated by bacteria and mesofauna (enchytraeids) and have more rapid rates of C turnover. We utilized several isotopic measures of soil C turnover including bomb radiocarbon techniques, the δ15N of SOM, and the difference between δ13C of SOM, DOC, and respired CO2. All three measures indicated greater C turnover rates in the surface soils of the lowland fen sites compared to the more upland locations. Quantitative PCR analyses of soil bacteria and archaea, combined with enchytraed counts, confirmed that surface soils from the lowland fen ecosystems had the highest abundances of these functional groups. Fungal biomass was highly variable and tended to be more abundant in the upland forest sites. Soil enzymatic results were mixed: potential cellulase activities were higher in the more upland soils even though rates of microbial activity were generally lower. Oxidative enzyme activities were higher in fens, even though these ecosystems are saturated and partly anaerobic. Overall our data support soil food web theory which argues that rapidly cycling systems are bacterial dominated with mesofaunal grazing, whereas slowly cycling systems have characteristic higher fungal:bacterial ratios.

Effects of Habitat Management Treatments on Plant Community Composition and Biomass in a Montane Wetland

EPA Science Inventory

We evaluated the vegetative response of wetlands and adjacent upland grasslands to four treatment regimes (continuous idle, fall prescribed burning followed by idle, annual fall cattle grazing, and rotation of summer grazing and idle) commonly used by the USGS. . . Our results il...

Resilience of Alaska's Boreal Forest to Climatic Change

NASA Technical Reports Server (NTRS)

Chapin, F. S., III; McGuire, A. D.; Ruess, R. W.; Hollingsworth, T. N.; Mack, M. C.; Johnstone, J. F.; Kasischke, E. S.; Euskirchen, E. S.; Jones, J. B.; Jorgenson, M. T.;

Resilience of Alaska’s boreal forest to climatic change

USGS Publications Warehouse

Chapin, F.S.; McGuire, A. David; Ruess, Roger W.; Hollingsworth, Teresa N.; Mack, M.C.; Johnstone, J.F.; Kasischke, E.S.; Euskirchen, E.S.; Jones, J.B.; Jorgenson, M.T.; Kielland, K.; Kofinas, G.; Turetsky, M.R.; Yarie, J.; Lloyd, A.H.; Taylor, D.L.

2010-01-01

This paper assesses the resilience of Alaska’s boreal forest system to rapid climatic change. Recent warming is associated with reduced growth of dominant tree species, plant disease and insect outbreaks, warming and thawing of permafrost, drying of lakes, increased wildfire extent, increased postfire recruitment of deciduous trees, and reduced safety of hunters traveling on river ice. These changes have modified key structural features, feedbacks, and interactions in the boreal forest, including reduced effects of upland permafrost on regional hydrology, expansion of boreal forest into tundra, and amplification of climate warming because of reduced albedo (shorter winter season) and carbon release from wildfires. Other temperature-sensitive processes for which no trends have been detected include composition of plant and microbial communities, long-term landscape-scale change in carbon stocks, stream discharge, mammalian population dynamics, and river access and subsistence opportunities for rural indigenous communities. Projections of continued warming suggest that Alaska’s boreal forest will undergo significant functional and structural changes within the next few decades that are unprecedented in the last 6000 years. The impact of these social–ecological changes will depend in part on the extent of landscape reorganization between uplands and lowlands and on policies regulating subsistence opportunities for rural communities.

Environmental gradients and identification of wetlands in north-central Florida

USGS Publications Warehouse

Davis, M.M.; Sprecher, S.W.; Wakeley, J.S.; Best, G.R.

1996-01-01

Vegetation composition, soil morphology, and hydrology were characterized along wetland-to-upland gradients at six forested sites in north-central Florida to compare results of Federal wetland delineation methods with 3–5 yr of hydrologic data. Wetland and non-wetland identifications were supported by hydrology data in eight of nine plant communities. Lack of hydric soil indicators and hydrophytic vegetation in two upland communities (scrub and mixed mesic hardwoods) agreed with a deep water table. Six wetland communities (cypress dome, cypress strand, bayhead, cypress/bayhead, red maple/oak swamp, and cedar swamp) with field indicators of wetland hydrology, hydrophytic vegetation, and hydric soils were inundated or had water tables at or near the ground surface at least 5% of the growing season in most years., Flatwoods communities, however, occurred at intermediate positions on the moisture gradient and could not be consistently identified as wetland or upland communities. Identification of flatwoods as wetlands depended on wetland delineation method and was not usually supported by hydrologic measurements. In the flatwoods community, soil properties and vegetation composition were correlated with the mean and standard deviation of water-table depths, as well as the depth continuously exceeded by the water table at least 5% of the growing season in most years. Various hydrologic parameters need to be considered in addition to the 5% exceedence level currently used in Federal wetland delineation guidance when characterizing wetland conditions in low-gradient areas such as flatwoods.

Sensitivity of mesquite shrubland CO2 exchange to precipitation in contrasting landscape settings.

PubMed

Potts, Daniel L; Scott, Russell L; Cable, Jessica M; Huxman, Travis E; Williams, David G

2008-10-01

In semiarid ecosystems, physiography (landscape setting) may interact with woody-plant and soil microbe communities to constrain seasonal exchanges of material and energy at the ecosystem scale. In an upland and riparian shrubland, we examined the seasonally dynamic linkage between ecosystem CO2 exchange, woody-plant water status and photosynthesis, and soil respiration responses to summer rainfall. At each site, we compared tower-based measurements of net ecosystem CO2 exchange (NEE) with ecophysiological measurements among velvet mesquite (Prosopis velutina Woot.) in three size classes and soil respiration in sub-canopy and inter-canopy micro-sites. Monsoonal rainfall influenced a greater shift in the magnitude of ecosystem CO2 assimilation in the upland shrubland than in the riparian shrubland. Mesquite water status and photosynthetic gas exchange were closely linked to the onset of the North American monsoon in the upland shrubland. In contrast, the presence of shallow alluvial groundwater in the riparian shrubland caused larger size classes of mesquite to be physiologically insensitive to monsoonal rains. In both shrublands, soil respiration was greatest beneath mesquite canopies and was coupled to shallow soil moisture abundance. Physiography, through its constraint on the physiological sensitivity of deeply rooted woody plants, may interact with plant-mediated rates of soil respiration to affect the sensitivity of semiarid-ecosystem carbon exchange in response to episodic rainfall.

Estimation of soil-to-plant transfer factors of radiocesium in 99 wild plant species grown in arable lands 1 year after the Fukushima 1 Nuclear Power Plant accident.

PubMed

Yamashita, Jun; Enomoto, Takashi; Yamada, Masao; Ono, Toshiro; Hanafusa, Tadashi; Nagamatsu, Tomohiro; Sonoda, Shoji; Yamamoto, Yoko

2014-01-01

One year after the deposition of radionuclides from the Fukushima 1 Nuclear Power Plant (A formal name is Fukushima Daiichi Nuclear Power Station) in March 2011, radiocesium (¹³⁴Cs, ¹³⁷Cs) concentrations ([Cs]) were comprehensively investigated in the wild plants of 99 species most of which were annual or summer green perennial herbs and started to grow from April 2012 at the heavily contaminated fields of paddy (three study sites) and upland (one study site) in Fukushima Prefecture. The survey was conducted three times (April, July and October) in the year. In each site, soils (soil cores of 5-cm depth) and plants (aerial shoots) were collected for determination of [Cs] on a dry weight basis, and then the transfer factor (TF) of radiocesium from soil to plant ([Cs]plant/[Cs]soil) was estimated in each species. The [Cs] values of both soils and plants largely varied. However, some species exhibited relatively high TF values (more than 0.4) (e.g., Athyrium yokoscense, Dryopteris tokyoensis, and Cyperus brevifolius), while others exhibited almost negligible values (less than 0.01) (e.g., Salix miyabeana, Humulus scandens, and Elymus tsukushiensis). In addition, judging from the 11 species grown in both paddy and upland fields, TF values were generally higher in the paddy fields. The estimation of phytoextraction efficiency of soil radiocesium by weed communities in the paddy fields suggests that the weed community is not a practical candidate for phytoremediation technique.

Roger Lake research natural area: guidebook supplement 29.

Treesearch

J. Dana Visalli

2006-01-01

Roger Lake Research Natural Area (RNA), a 174.7-ha reserve in north-central Washington, contains a rich diversity of landforms, plant communities, and wildlife habitats. Spreading outward from the lake itself, sedge and sphagnum fens give way to upland coniferous forest, granitic cliffs, and a relictual, high-altitude big sagebrush-whitebark pine (Artemisia tridentata-...

Round Top Butte Research Natural Area: guidebook supplement 46

Treesearch

Marcia L. Wineteer; Reid Schuller

2014-01-01

This guidebook describes major biological and physical attributes of the 243-ha (600-ac) Round Top Butte Research Natural Area. The area supports high-quality examples of valley upland grasslands and savanna of the Cascade foothills. Plant communities include Oregon white oak (Quercus garryana) savanna and open woodland with forbs and grasses;...

Southwestern Woody Riparian Vegetation and Succession: An Evolutionary Approach

Treesearch

R. Roy Johnson; Peter S. Bennett; Lois Haight

1989-01-01

Interrelationships between flooding and climax woody vegetation in riparian ecosystems of the desert Southwest are discussed. The lack of succession in woody desert upland and desert riparian plant communities results from opposite stresses, the former from aridity, the latter from flooding. Today's "wet riparian big five" are northern tree species of...

Relationships between vegetation dynamics and hydroclimatic drivers in the northern high-latitude uplands

NASA Astrophysics Data System (ADS)

Wang, H.; Tetzlaff, D.; Buttle, J. M.; Carey, S. K.; Laudon, H.; McNamara, J. P.; Soulsby, C.; Spence, C.

2015-12-01

IPCC projections show that climate warming will be particularly high in northern high-latitude regions, which has profound ecohydrological implications: a small rise of temperature may result in lower water availability in summer due to less rainfall and more evapotranspiration, increase flooding risks by accelerating melting rates in spring, and more rain rather than snow in winter, etc. These impacts will affect vegetation communities by altering timing of the spring "green-up" and fall "senescence". Change in vegetation water use will feedback to atmospheric and hydrological cycles. Here, we report results from the PLATO "Plant-water interlinkages in northern uplands - mediation of climate change?" project where we investigate water uptake by plants and consequent water availability in northern regions along a cross-regional climate gradient to understand future responses to change in high-latitude uplands. Six sites in Sweden (Krycklan), Canada (Wolf Creek; Baker Creek; Dorset), Scotland (Girnock) and the USA (Dry Creek) span moisture and energy gradients found at high-latitudes. We are presenting preliminary results of vegetation phenology changes from 2000 to 2014 by analysing remote sensing vegetation indices. The relationship between vegetation phenology and climatic drivers (temperature and precipitation) is also investigated.

Limits to understory plant restoration following fuel-reduction treatments in a piñon-juniper woodland.

PubMed

Redmond, Miranda D; Zelikova, Tamara J; Barger, Nichole N

2014-11-01

National fuel-reduction programs aim to reduce the risk of wildland fires to human communities and to restore forest and rangeland ecosystems to resemble their historical structure, function, and diversity. There are a number of factors, such as seed bank dynamics, post-treatment climate, and herbivory, which determine whether this latter goal may be achieved. Here, we examine the short-term (2 years) vegetation response to fuel-reduction treatments (mechanical mastication, broadcast burn, and pile burn) and seeding of native grasses on understory vegetation in an upland piñon-juniper woodland in southeast Utah. We also examine how wildlife herbivory affects the success of fuel-reduction treatments. Herbaceous cover increased in response to fuel-reduction treatments in all seeded treatments, with the broadcast burn and mastication having greater increases (234 and 160 %, respectively) in herbaceous cover than the pile burn (32 %). In the absence of seeding, herbaceous cover only increased in the broadcast burn (32 %). Notably, fuel-reduction treatments, but not seeding, strongly affected herbaceous plant composition. All fuel-reduction treatments increased the relative density of invasive species, especially in the broadcast burn, which shifted the plant community composition from one dominated by perennial graminoids to one dominated by annual forbs. Herbivory by wildlife reduced understory plant cover by over 40 % and altered plant community composition. If the primary management goal is to enhance understory cover while promoting native species abundance, our study suggests that mastication may be the most effective treatment strategy in these upland piñon-juniper woodlands. Seed applications and wildlife exclosures further enhanced herbaceous cover following fuel-reduction treatments.

Habitat usage by prairie grouse on the Sheyenne National Grasslands

Treesearch

Llewellyn L. Manske; William T. Barker

1988-01-01

Prairie grouse habitat usage was observed for six years. Spring and summer habitat usage was primarily in the upland and midland grassland habitat types. Habitat usage shifted during the fall and winter to cropland and associated tree shelterbelts. The switchgrass plant community was the primary concealment cover for nesting and roosting. Cropland and associated tree...

What functional strategies drive drought survival and recovery of perennial species from upland grassland?

PubMed Central

Zwicke, Marine; Picon-Cochard, Catherine; Morvan-Bertrand, Annette; Prud’homme, Marie-Pascale; Volaire, Florence

2015-01-01

Background and Aims Extreme climatic events such as severe droughts are expected to increase with climate change and to limit grassland perennity. The present study aimed to characterize the adaptive responses by which temperate herbaceous grassland species resist, survive and recover from a severe drought and to explore the relationships between plant resource use and drought resistance strategies. Methods Monocultures of six native perennial species from upland grasslands and one Mediterranean drought-resistant cultivar were compared under semi-controlled and non-limiting rooting depth conditions. Above- and below-ground traits were measured under irrigation in spring and during drought in summer (50 d of withholding water) in order to characterize resource use and drought resistance strategies. Plants were then rehydrated and assessed for survival (after 15 d) and recovery (after 1 year). Key Results Dehydration avoidance through water uptake was associated with species that had deep roots (>1·2 m) and high root mass (>4 kg m−3). Cell membrane stability ensuring dehydration tolerance of roots and meristems was positively correlated with fructan content and negatively correlated with sucrose content. Species that survived and recovered best combined high resource acquisition in spring (leaf elongation rate >9 mm d−1 and rooting depth >1·2 m) with both high dehydration avoidance and tolerance strategies. Conclusions Most of the native forage species, dominant in upland grassland, were able to survive and recover from extreme drought, but with various time lags. Overall the results suggest that the wide range of interspecific functional strategies for coping with drought may enhance the resilience of upland grassland plant communities under extreme drought events. PMID:25851134

What functional strategies drive drought survival and recovery of perennial species from upland grassland?

PubMed

Zwicke, Marine; Picon-Cochard, Catherine; Morvan-Bertrand, Annette; Prud'homme, Marie-Pascale; Volaire, Florence

2015-11-01

Extreme climatic events such as severe droughts are expected to increase with climate change and to limit grassland perennity. The present study aimed to characterize the adaptive responses by which temperate herbaceous grassland species resist, survive and recover from a severe drought and to explore the relationships between plant resource use and drought resistance strategies. Monocultures of six native perennial species from upland grasslands and one Mediterranean drought-resistant cultivar were compared under semi-controlled and non-limiting rooting depth conditions. Above- and below-ground traits were measured under irrigation in spring and during drought in summer (50 d of withholding water) in order to characterize resource use and drought resistance strategies. Plants were then rehydrated and assessed for survival (after 15 d) and recovery (after 1 year). Dehydration avoidance through water uptake was associated with species that had deep roots (>1·2 m) and high root mass (>4 kg m(-3)). Cell membrane stability ensuring dehydration tolerance of roots and meristems was positively correlated with fructan content and negatively correlated with sucrose content. Species that survived and recovered best combined high resource acquisition in spring (leaf elongation rate >9 mm d(-1) and rooting depth >1·2 m) with both high dehydration avoidance and tolerance strategies. Most of the native forage species, dominant in upland grassland, were able to survive and recover from extreme drought, but with various time lags. Overall the results suggest that the wide range of interspecific functional strategies for coping with drought may enhance the resilience of upland grassland plant communities under extreme drought events. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Seeding and planting upland oaks

Treesearch

1989-01-01

Oaks can be planted or seeded in uplands to: (1) afforest old fields, strip-mined areas, or other areas devoid of trees, and (2) supplement natural reproduction within existing forests. Planting is usually more successful than direct seeding. But even under good conditions survival and growth of planted oak has been considerably poorer than with conifers and other...

Natural canopy damage and the ecological restoration of fire-indicative groundcover vegetation in an oak-pine forest

Treesearch

J. Stephen Brewer

2016-01-01

An important goal of restoring fire to upland oak-dominated communities that have experienced fire exclusion is restoring groundcover plant species diversity and composition indicative of fire-maintained habitats. Several studies have shown that fire alone, however, may not be sufficient to accomplish this goal. Furthermore, treatment-driven declines in rare forest...

[The inheritance of an ultra-dwarf plant mutant from upland cotton].

PubMed

Chen, Xu-Sheng; DI, Jia-Chun; Xu, Nai-Yin; Xiao, Song-Hua; Liu, Jian-Guang

2007-04-01

The inheritance of an ultra-dwarf plant mutant from upland cotton (Gossypium hirsutum L.) was studied, which showed that the mutant was controlled by single recessive quality gene. This gene was denominated as du tentatively. No similar mutant has been found in upland cotton. The mutation could not normally flower and produce bolls under natural conditions, and its mature height was only 10.5 cm. When treated with exogenous GA3, it could normally flower and boll, and plant height could reach 57.8 cm finally.

Seeding and planting upland oaks

Treesearch

T. E. Russell

1971-01-01

Upland oaks can be established by seeding or planting, but additional experience is needed before these methods become economical alternatives to natural regeneration. Recently forested sites are generally more favorable than abandoned fields. Lack of repellents to protect acorns from animals severely limits direct seeding, but oaks can be planted readily by...

Demographic source-sink dynamics restrict local adaptation in Elliott's blueberry (Vaccinium elliottii).

PubMed

Anderson, Jill T; Geber, Monica A

2010-02-01

In heterogeneous landscapes, divergent selection can favor the evolution of locally adapted ecotypes, especially when interhabitat gene flow is minimal. However, if habitats differ in size or quality, source-sink dynamics can shape evolutionary trajectories. Upland and bottomland forests of the southeastern USA differ in water table depth, light availability, edaphic conditions, and plant community. We conducted a multiyear reciprocal transplant experiment to test whether Elliott's blueberry (Vaccinium elliottii) is locally adapted to these contrasting environments. Additionally, we exposed seedlings and cuttings to prolonged drought and flooding in the greenhouse to assess fitness responses to abiotic stress. Contrary to predictions of local adaptation, V. elliottii families exhibited significantly higher survivorship and growth in upland than in bottomland forests and under drought than flooded conditions, regardless of habitat of origin. Neutral population differentiation was minimal, suggesting widespread interhabitat migration. Population density, reproductive output, and genetic diversity were all significantly greater in uplands than in bottomlands. These disparities likely result in asymmetric gene flow from uplands to bottomlands. Thus, adaptation to a marginal habitat can be constrained by small populations, limited fitness, and immigration from a benign habitat. Our study highlights the importance of demography and genetic diversity in the evolution of local (mal)adaptation.

Nine-year performance of a variety of Populus taxa on an upland site in western Kentucky

Treesearch

Randall J. Rousseau; Joshua P. Adams; David W. Wilkerson

2013-01-01

A variety of hybrid poplars have been planted on upland sites throughout the Midwest and Midsouth regions of the United States. Very few of these clones have proven to be worthwhile due to susceptibility to a variety of diseases. Five different Populus taxa were planted on an upland site in western Kentucky as a means of assessing resistance to local...

Influence of selection systems and shelterwood methods on understory plant communities of longleaf pine forests in flatwoods and uplands

Treesearch

Dale G. Brockway; Kenneth W. Outcalt

2015-01-01

Although longleaf pine (Pinus palustris Mill.) forests have mostly been managed with even-aged methods, interest has been rising in uneven-aged systems, as a means of achieving a broader range of stewardship objectives. Selection silviculture has been practiced on a limited scale in longleaf pine, but difficulty of using traditional approaches and...

Planting yellow-poplar, white ash, black cherry, and black locust

Treesearch

Robert D. Williams; Calvin F. Bey

1989-01-01

Hardwood plantations that include yellow-poplar, white ash, black cherry, and black locust can be established on upland sites in the central hardwoods region (see Note 3.06 Seeding and Planting Upland Oaks, and Note 3.08 Seeding and Planting Walnut). Even though hardwoods are more difficult to establish than conifers, there are...

Engaging in School-Led Multisectoral Collaboration: Implications to Agroforestry Promotion in the Philippine Uplands

ERIC Educational Resources Information Center

Landicho, Leila D.; Cabahug, Rowena D.; De Luna, Catherine C.

2009-01-01

The Agroforestry Support Program for Empowering Communities Towards Self-Reliance (ASPECTS) was conceived to develop a model of two-stage approach in agroforestry promotion by capacitating the upland communities to establish community-managed agroforestry extension services, while strengthening the agroforestry education programs of the three…

Interaction between C 4 barnyard grass and C 3 upland rice under elevated CO 2: Impact of mycorrhizae

NASA Astrophysics Data System (ADS)

Tang, Jianjun; Xu, Liming; Chen, Xin; Hu, Shuijin

2009-03-01

Atmospheric CO 2 enrichment may impact arbuscular mycorrhizae (AM) development and function, which could have subsequent effects on host plant species interactions by differentially affecting plant nutrient acquisition. However, direct evidence illustrating this scenario is limited. We examined how elevated CO 2 affects plant growth and whether mycorrhizae mediate interactions between C 4 barnyard grass ( Echinochloa crusgalli (L.) Beauv.) and C 3 upland rice ( Oryza sativa L.) in a low nutrient soil. The monocultures and combinations with or without mycorrhizal inoculation were grown at ambient (400 ± 20 μmol mol -1) and elevated CO 2 (700 ± 20 μmol mol -1) levels. The 15N isotope tracer was introduced to quantify the mycorrhizally mediated N acquisition of plants. Elevated CO 2 stimulated the growth of C 3 upland rice but not that of C 4 barnyard grass under monoculture. Elevated CO 2 also increased mycorrhizal colonization of C 4 barnyard grass but did not affect mycorrhizal colonization of C 3 upland rice. Mycorrhizal inoculation increased the shoot biomass ratio of C 4 barnyard grass to C 3 upland rice under both CO 2 concentrations but had a greater impact under the elevated than ambient CO 2 level. Mycorrhizae decreased relative interaction index (RII) of C 3 plants under both ambient and elevated CO 2, but mycorrhizae increased RII of C 4 plants only under elevated CO 2. Elevated CO 2 and mycorrhizal inoculation enhanced 15N and total N and P uptake of C 4 barnyard grass in mixture but had no effects on N and P acquisition of C 3 upland rice, thus altering the distribution of N and P between the species in mixture. These results implied that CO 2 stimulation of mycorrhizae and their nutrient acquisition may impact competitive interaction of C 4 barnyard grass and C 3 upland rice under future CO 2 scenarios.

Exotic plant species associations with horse trails, old roads, and intact native communities in the Missouri Ozarks

USGS Publications Warehouse

Stroh, E.D.; Struckhoff, M.A.

2009-01-01

We compared the extent to which exotic species are associated with horse trails, old roads, and intact communities within three native vegetation types in Ozark National Scenic Riverways, Missouri. We used a general linear model procedure and a Bonferroni multiple comparison test to compare exotic species richness, exotic to native species ratios, and exotic species percent cover across three usage types (horse trails, old roads, and intact communities) and three community types (river bottoms, upland waterways, and glades). We found that both exotic species richness and the ratio of exotic species to native species were greater in plots located along horse trails than in plots located either in intact native communities or along old roads. Native community types did not differ in the number of exotic species present, but river bottoms had a significantly higher exotic to native species ratio than glades. Continued introduction of exotic plant propagules may explain why horse trails contain more exotic species than other areas in a highly disturbed landscape.

Beneficial Insect Borders Provide Northern Bobwhite Brood Habitat

PubMed Central

Moorman, Christopher E.; Plush, Charles J.; Orr, David B.; Reberg-Horton, Chris

2013-01-01

Strips of fallow vegetation along cropland borders are an effective strategy for providing brood habitat for declining populations of upland game birds (Order: Galliformes), including northern bobwhite (Colinus virginianus), but fallow borders lack nectar-producing vegetation needed to sustain many beneficial insect populations (e.g., crop pest predators, parasitoids, and pollinator species). Planted borders that contain mixes of prairie flowers and grasses are designed to harbor more diverse arthropod communities, but the relative value of these borders as brood habitat is unknown. We used groups of six human-imprinted northern bobwhite chicks as a bioassay for comparing four different border treatments (planted native grass and prairie flowers, planted prairie flowers only, fallow vegetation, or mowed vegetation) as northern bobwhite brood habitat from June-August 2009 and 2010. All field border treatments were established around nine organic crop fields. Groups of chicks were led through borders for 30-min foraging trials and immediately euthanized, and eaten arthropods in crops and gizzards were measured to calculate a foraging rate for each border treatment. We estimated arthropod prey availability within each border treatment using a modified blower-vac to sample arthropods at the vegetation strata where chicks foraged. Foraging rate did not differ among border treatments in 2009 or 2010. Total arthropod prey densities calculated from blower-vac samples did not differ among border treatments in 2009 or 2010. Our results showed plant communities established to attract beneficial insects should maximize the biodiversity potential of field border establishment by providing habitat for beneficial insects and young upland game birds. PMID:24376759

Forecasting climate change impacts to plant community composition in the Sonoran Desert region

USGS Publications Warehouse

Munson, Seth M.; Webb, Robert H.; Belnap, Jayne; Hubbard, J. Andrew; Swann, Don E.; Rutman, Sue

2012-01-01

Hotter and drier conditions projected for the southwestern United States can have a large impact on the abundance and composition of long-lived desert plant species. We used long-term vegetation monitoring results from 39 large plots across four protected sites in the Sonoran Desert region to determine how plant species have responded to past climate variability. This cross-site analysis identified the plant species and functional types susceptible to climate change, the magnitude of their responses, and potential climate thresholds. In the relatively mesic mesquite savanna communities, perennial grasses declined with a decrease in annual precipitation, cacti increased, and there was a reversal of the Prosopis velutina expansion experienced in the 20th century in response to increasing mean annual temperature (MAT). In the more xeric Arizona Upland communities, the dominant leguminous tree, Cercidium microphyllum, declined on hillslopes, and the shrub Fouquieria splendens decreased, especially on south- and west-facing slopes in response to increasing MAT. In the most xeric shrublands, the codominant species Larrea tridentata and its hemiparasite Krameria grayi decreased with a decrease in cool season precipitation and increased aridity, respectively. This regional-scale assessment of plant species response to recent climate variability is critical for forecasting future shifts in plant community composition, structure, and productivity.

9 CFR 146.53 - Terminology and classification; slaughter plants and premises.

Code of Federal Regulations, 2010 CFR

2010-01-01

... COMMERCIAL POULTRY Special Provisions for Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.53 Terminology and classification... from which the commercial waterfowl and commercial upland game bird industry may conduct a program to...

9 CFR 146.53 - Terminology and classification; slaughter plants and premises.

Code of Federal Regulations, 2014 CFR

2014-01-01

... COMMERCIAL POULTRY Special Provisions for Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.53 Terminology and classification... from which the commercial waterfowl and commercial upland game bird industry may conduct a program to...

9 CFR 146.53 - Terminology and classification; slaughter plants and premises.

Code of Federal Regulations, 2011 CFR

2011-01-01

... COMMERCIAL POULTRY Special Provisions for Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.53 Terminology and classification... from which the commercial waterfowl and commercial upland game bird industry may conduct a program to...

9 CFR 146.53 - Terminology and classification; slaughter plants and premises.

Code of Federal Regulations, 2012 CFR

2012-01-01

... COMMERCIAL POULTRY Special Provisions for Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.53 Terminology and classification... from which the commercial waterfowl and commercial upland game bird industry may conduct a program to...

9 CFR 146.53 - Terminology and classification; slaughter plants and premises.

Code of Federal Regulations, 2013 CFR

2013-01-01

... COMMERCIAL POULTRY Special Provisions for Commercial Upland Game Birds, Commercial Waterfowl, Raised-for-Release Upland Game Birds, and Raised-for-Release Waterfowl § 146.53 Terminology and classification... from which the commercial waterfowl and commercial upland game bird industry may conduct a program to...

High-Resolution Remote Sensing and Stable Isotope Patterns Across Heath-Shrub-Forest Ecotone at Abisko and Vassijaure, Northern Sweden

NASA Astrophysics Data System (ADS)

Schwan, M. R.; Herrick, C.; Hobbie, E. A.; Chen, J.; Varner, R. K.; Palace, M. W.; Marek, E.; Kashi, N. N.; Smith, S. L.

2015-12-01

Rapid warming in arctic and sub-arctic environments shifts plant community structure which in turn can alter carbon cycling by releasing large stocks of carbon sequestered in arctic soils. Much work has been done in sub-arctic peatlands to understand how shifts in dominant vegetation cover can ultimately affect global carbon balances, but less focus has been given to upland environments where similar changes are occurring. Recent circumpolar expansion of deciduous shrubs and trees in sub-arctic upland environments may alter carbon cycling due to shrubs and trees sequestering less C in soils than the heath plants they typically replace. In this study we explored the relationship between nutrient and carbon cycling and above-ground vegetation on six transects which traverse an ecotone gradient from heath tundra (dominated by ericoid mycorrhizal plants) through deciduous shrubs to deciduous trees (dominated by ectomycorrhizal plants) in upland environments of sub-arctic Sweden near Vassijaure (~850 mm precipitation) and Abisko (~300 mm precipitation). We collected soil and foliage for analysis of natural abundances of stable carbon and nitrogen isotopes (δ13C and δ15N), which can be a sensitive indicator of C and N dynamics. We also took high-resolution remote aerial imagery over the transects to calculate percent cover of vegetation types using GIS software. We concurrently estimated percent cover in smaller plots on the ground of three dominant species, Empetrum nigrum, Betula nana, and Betula pubescens, to serve as ground-truthing for the aerial imagery. Analysis of vegetation cover data shows significant differences in vegetation types along the transects. Preliminary multiple regression analysis of isotopes shows that δ13C in organic soil at the Vassijaure site is mostly controlled by distance along the transect, an interaction term between transect distance and soil depth, and δ15N (adjusted r2 = 0.85, p < 0.0001). Values of δ13C were lower in soils in the shrubs and forest than in the heath. In regression analyses, δ15N was primarily controlled by depth, and secondarily by heath cover (adjusted r2 = 0.68, p < 0.0001). These results suggest that trees and shrubs are sequestering carbon, and interactions between plants and belowground soil communities may be driving nitrogen dynamics.

Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.)

PubMed Central

2013-01-01

Background Cotton, one of the world’s leading crops, is important to the world’s textile and energy industries, and is a model species for studies of plant polyploidization, cellulose biosynthesis and cell wall biogenesis. Here, we report the construction of a plant-transformation-competent binary bacterial artificial chromosome (BIBAC) library and comparative genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.) with one of its diploid putative progenitor species, G. raimondii Ulbr. Results We constructed the cotton BIBAC library in a vector competent for high-molecular-weight DNA transformation in different plant species through either Agrobacterium or particle bombardment. The library contains 76,800 clones with an average insert size of 135 kb, providing an approximate 99% probability of obtaining at least one positive clone from the library using a single-copy probe. The quality and utility of the library were verified by identifying BIBACs containing genes important for fiber development, fiber cellulose biosynthesis, seed fatty acid metabolism, cotton-nematode interaction, and bacterial blight resistance. In order to gain an insight into the Upland cotton genome and its relationship with G. raimondii, we sequenced nearly 10,000 BIBAC ends (BESs) randomly selected from the library, generating approximately one BES for every 250 kb along the Upland cotton genome. The retroelement Gypsy/DIRS1 family predominates in the Upland cotton genome, accounting for over 77% of all transposable elements. From the BESs, we identified 1,269 simple sequence repeats (SSRs), of which 1,006 were new, thus providing additional markers for cotton genome research. Surprisingly, comparative sequence analysis showed that Upland cotton is much more diverged from G. raimondii at the genomic sequence level than expected. There seems to be no significant difference between the relationships of the Upland cotton D- and A-subgenomes with the G. raimondii genome, even though G. raimondii contains a D genome (D5). Conclusions The library represents the first BIBAC library in cotton and related species, thus providing tools useful for integrative physical mapping, large-scale genome sequencing and large-scale functional analysis of the Upland cotton genome. Comparative sequence analysis provides insights into the Upland cotton genome, and a possible mechanism underlying the divergence and evolution of polyploid Upland cotton from its diploid putative progenitor species, G. raimondii. PMID:23537070

A Preliminary Survey of Terrestrial Plant Communities in the Sierra de los Valles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Randy G. Balice

To more fully understand the species compositions and environmental relationships of high-elevation terrestrial plant communities in the Los Alamos region, 30 plots in randomly selected, upland locations were sampled for vegetation, topographic, and soils characteristics. The locations of these plots were constrained to be above 2,134 m (7,000 ft) above mean sea level. The field results were summarized, analyzed, and incorporated into a previously developed classification of vegetation and land cover types. The revised and updated discussions of the environmental relationships at these sites and their associated species compositions are included in this report. A key to the major landmore » cover types in the Los Alamos region was also revised in accordance with the new information and included herein its entirety.« less

The effect of landform and plant size on mortallity and recovery of longleaf pine during a 100-year loog1

Treesearch

Brain J. Palik; William K. Michener; Robert J. Mitchell; Joseph W. Jones

1999-01-01

Unlike annual floods, large floods affect plant species outside of bottomland ecosystems. We know little about the effects of catastrophic floods on upland plants because of the rarity of this type of disturbance. Here we report on mortality and vegetative recovery of upland longleaf pines (Pinus palustris) after a large flood. The flood top-killed most seedlings...

Seed Size, Ginning Rate, and Net Ginning Energy Requirement in Upland Cotton

USDA-ARS?s Scientific Manuscript database

Not much information is available in the literature on the effect of seed size on ginning efficiency in upland cotton. In 2015, nine diverse upland cotton cultivars and germplasm were planted at two locations in Stoneville, MS to test the above relationship. Two of the cultivars (Ark 9317-26 and DP ...

Medicinal plants at Rio Jauaperi, Brazilian Amazon: Ethnobotanical survey and environmental conservation.

PubMed

Pedrollo, Camilo Tomazini; Kinupp, Valdely Ferreira; Shepard, Glenn; Heinrich, Michael

2016-06-20

The Amazon basin is a mosaic of different environments. Flooded riparian and upland forests play a significant role for the establishment of human settlements. Riparian communities in the Amazon have evolved depending on the use of plants applied for therapeutic purposes, thus developing important knowledge about their management and preparation. This paper describes and analyzes the use and management of medicinal plants in order to establish links to environmental conservation. The categorization of habitats of occurrence and categories of diseases were held in five riparian communities at Rio Jauaperi, in the border between Roraima and Amazonas states in Brazil. The study sight is poorly investigated in terms of scientific research. Quantitative and qualitative ethnobotanical field inquiries and analytical methods including observations, individual and focus group discussions, individual interviews, preference ranking by free listing tasks, guided tours and community mapping were applied. Sutrop's cognitive salience index was applied in order to check the most important ethnospecies and diseases. The survey was conducted from February to December 2012. A total of 62 informants were interviewed, resulting in 119 botanical species documented. The most salient medicinal species are usually wide distributed and recognized transculturally. Arboreal habit was the most important corresponding to 47% of total species used. The most frequent accessed environments were terra-firme (upland forest), vargeado (flooded forest), poultry (regenerating forest) and restinga (seasonally flooded forest) which together provides 59% of the total medicinal plant species. Exotic species played a secondary role with only 20% of the total. Thirty seven percent of the species were cultivated. Plants at homegardens are usually associated with children's or women's disease. Xixuaú is the community with improved ability to environmental preservation using more forestry species. The most worrying disease was malaria. Biomedical assistance is precarious in the region and many diseases and healing rituals are culturally built. Ethnobotanical surveys of medicinal plants can indicate the level of biodiversity conservation and human health by integrating social and ecological analytical elements. Considering a predominance of management for subsistence, the higher richness of native medicinal species availability indicates that biodiversity and associated traditional knowledge are better preserved. The methods applied here might contribute for the decision-making process regarding conservation public policies and medical assistance in remote areas of the Amazon basin. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Effects of fire retardant chemical and fire suppressant foam on shrub steppe vegetation in northern Nevada

USGS Publications Warehouse

Larson, Diane L.; Newton, Wesley E.; Anderson, Patrick J.; Stein, Steven J.

1999-01-01

The objectives of this study were to determine the effects of fire retardantchemical (Phos-Chek G75-F*) and fire suppressant foam (Silv-Ex) application,alone and in combination with fire, on Great Basin shrub steppe vegetation. Wemeasured growth, resprouting, flowering, and incidence of galling insects onChrysothamnus viscidiflorusandArtemisia tridentata. These characteristics were notaffected by any chemical treatment. We measured community characteristics,including species richness, evenness, and diversity, and number of stems ofwoody and herbaceous plants in riparian and upland plots. Of these characteristics, only species richness and number ofstems/m2 clearly responded to the chemicaltreatments, and the response was modified by fire. In general, speciesrichness declined, especially after Phos-Chek application. However, by the endof the growing season, species richness did not differ between treated andcontrol plots. Acanonical variate analysis suggested that burning had agreater influence on community composition than did the chemical treatments.In general, riparian areas showed more significant responses to the treatmentsthan did upland areas, and June applications produced greater changes inspecies richness and stem density than did July applications.

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types.

PubMed

Gottel, Neil R; Castro, Hector F; Kerley, Marilyn; Yang, Zamin; Pelletier, Dale A; Podar, Mircea; Karpinets, Tatiana; Uberbacher, Ed; Tuskan, Gerald A; Vilgalys, Rytas; Doktycz, Mitchel J; Schadt, Christopher W

2011-09-01

The root-rhizosphere interface of Populus is the nexus of a variety of associations between bacteria, fungi, and the host plant and an ideal model for studying interactions between plants and microorganisms. However, such studies have generally been confined to greenhouse and plantation systems. Here we analyze microbial communities from the root endophytic and rhizospheric habitats of Populus deltoides in mature natural trees from both upland and bottomland sites in central Tennessee. Community profiling utilized 454 pyrosequencing with separate primers targeting the V4 region for bacterial 16S rRNA and the D1/D2 region for fungal 28S rRNA genes. Rhizosphere bacteria were dominated by Acidobacteria (31%) and Alphaproteobacteria (30%), whereas most endophytes were from the Gammaproteobacteria (54%) as well as Alphaproteobacteria (23%). A single Pseudomonas-like operational taxonomic unit (OTU) accounted for 34% of endophytic bacterial sequences. Endophytic bacterial richness was also highly variable and 10-fold lower than in rhizosphere samples originating from the same roots. Fungal rhizosphere and endophyte samples had approximately equal amounts of the Pezizomycotina (40%), while the Agaricomycotina were more abundant in the rhizosphere (34%) than endosphere (17%). Both fungal and bacterial rhizosphere samples were highly clustered compared to the more variable endophyte samples in a UniFrac principal coordinates analysis, regardless of upland or bottomland site origin. Hierarchical clustering of OTU relative abundance patterns also showed that the most abundant bacterial and fungal OTUs tended to be dominant in either the endophyte or rhizosphere samples but not both. Together, these findings demonstrate that root endophytic communities are distinct assemblages rather than opportunistic subsets of the rhizosphere.

77 FR 2254 - Endangered and Threatened Wildlife and Plants; Designation of Critical Habitat for Mississippi...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-01-17

...-0024; 4500030114] RIN 1018-AW89 Endangered and Threatened Wildlife and Plants; Designation of Critical... breeding ponds and upland habitats. However, in that revised proposed rule, we stated we used the mean... provide specific data on breeding pond or upland habitat use. Based on the peer review comments we...

Effect of seed size on ginning Efficiency in Upland Cotton (Gossypium hirsutum L.)

USDA-ARS?s Scientific Manuscript database

Not much information is available in the literature on the effect of seed size on ginning efficiency in upland cotton. In 2015 and 2016 nine diverse upland cotton cultivars and germplasm lines were planted at two locations in Stoneville, MS to test the above relationship. Two of the cultivars (Ark 9...

The Upper Mississippi River floodscape: spatial patterns of flood inundation and associated plant community distributions

USGS Publications Warehouse

DeJager, Nathan R.; Rohweder, Jason J.; Yin, Yao; Hoy, Erin E.

2016-01-01

Questions How is the distribution of different plant communities associated with patterns of flood inundation across a large floodplain landscape? Location Thirty-eight thousand nine hundred and seventy hectare of floodplain, spanning 320 km of the Upper Mississippi River (UMR). Methods High-resolution elevation data (Lidar) and 30 yr of daily river stage data were integrated to produce a ‘floodscape’ map of growing season flood inundation duration. The distributions of 16 different remotely sensed plant communities were quantified along the gradient of flood duration. Results Models fitted to the cumulative frequency of occurrence of different vegetation types as a function of flood duration showed that most types exist along a continuum of flood-related occurrence. The diversity of community types was greatest at high elevations (0–10 d of flooding), where both upland and lowland community types were found, as well as at very low elevations (70–180 d of flooding), where a variety of lowland herbaceous communities were found. Intermediate elevations (20–60 d of flooding) tended to be dominated by floodplain forest and had the lowest diversity of community types. Conclusions Although variation in flood inundation is often considered to be the main driver of spatial patterns in floodplain plant communities, few studies have quantified flood–vegetation relationships at broad scales. Our results can be used to identify targets for restoration of historical hydrological regimes or better anticipate hydro-ecological effects of climate change at broad scales.

Methane Emissions from Upland Forests

NASA Astrophysics Data System (ADS)

Megonigal, Patrick; Pitz, Scott; Wang, Zhi-Ping

2016-04-01

Global budgets ascribe 4-10% of atmospheric methane sinks to upland soils and assume that soils are the sole surface for methane exchange between upland forests and the atmosphere. The dogma that upland forests are uniformly atmospheric methane sinks was challenged a decade ago by the discovery of abiotic methane production from plant tissue. Subsequently a variety of relatively cryptic microbial and non-microbial methane sources have been proposed that have the potential to emit methane in upland forests. Despite the accumulating evidence of potential methane sources, there are few data demonstrating actual emissions of methane from a plant surface in an upland forest. We report direct observations of methane emissions from upland tree stems in two temperate forests. Stem methane emissions were observed from several tree species that dominate a forest located on the mid-Atlantic coast of North America (Maryland, USA). Stem emissions occurred throughout the growing season while soils adjacent to the trees simultaneously consumed methane. Scaling fluxes by stem surface area suggested the forest was a net methane source during a wet period in June, and that stem emissions offset 5% of the soil methane sink on an annual basis. High frequency measurements revealed diurnal cycles in stem methane emission rates, pointing to soils as the methane source and transpiration as the most likely pathway for gas transport. Similar observations were made in an upland forest in Beijing, China. However, in this case the evidence suggested the methane was not produced in soils, but in the heartwood by microbial or non-microbial processes. These data challenge the concept that forests are uniform sinks of methane, and suggest that upland forests are smaller methane sinks than previously estimated due to stem emissions. Tree emissions may be particularly important in upland tropical forests characterized by high rainfall and transpiration.

Influences of upland timber harvest on aquatic invertebrate communities in seasonal ponds: efficacy of forested buffers

Treesearch

Mark A. Hanson; Brian J. Palik; James O. Church; Anthony T. Miller

2010-01-01

We assessed community responses of aquatic invertebrates in 16 small, seasonal ponds in a forested region of north central Minnesota, USA, to evaluate potential influences of timber harvest and efficacy of uncut forested buffers in adjacent uplands. Invertebrate data gathered before (2000) and during the first 4 years following clearcut timber harvest (2001-2004)...

Influence of coarse woody debris on herpetofaunal communities in upland pine stands of the southeastern Coastal Plain

Treesearch

Justin C. Davis; Steven B. Castleberry; John C. Kilgo

2010-01-01

Coarse woody debris (CWD) is thought to benefit herpetofauna in a variety of ways including serving as feeding sites, providing a moist environment, and providing protection from temperature extremes. We investigated the importance of CWD to amphibian and reptile communities in managed upland pine stands in the southeastern United States Coastal Plain during years 6...

Ecological behavior and effects of energy related pollutants. Progress report, June 1976--August 1977. [SO2 impact on survival and stability of plant species; fallout /sup 137/Cs transfer processes in Southeastern Coastal Plain ecosystem

DOE Office of Scientific and Technical Information (OSTI.GOV)

Platt, R.B.; Ragsdale, H.L.; Murdy, W.H.

1977-10-25

The impact of SO/sub 2/ on the survival and stability of plant populations and communities was studied. The results to date have an important bearing on the adequacy of current permissible ambient air levels for SO/sub 2/. Atmospheric SO/sub 2/ concentrations at near permissible levels had a significant adverse effect on sexual reproduction processes, which results in a reduced number of viable seeds, in all 8 populations tested. Implications for both natural and agricultural plant species and possible significant losses of fruit production are discussed. An ecological implication of the invisible effect of fruit and seed mortality is postulated sincemore » the life cycle of many insects and the trophic relations of numerous animals depend, at least in part, on fruit production by trees and shrubs. Hence, there is a potential for disruptive effects on ecosystem level processes. Results are also reported from four systems-oriented studies within the Lower Three Runs Creek Watershed, Savannah River Plant, to examine fallout /sup 137/Cs transfer processes in ecological systems characteristic of the Southeastern Coastal Plain. These studies were carried out within the stream and its floodplains, within floodplains along the stream gradient, in upland aquatic systems (Carolina Bays), and in the upland scrub-oak forest system. Results are discussed.« less

Vegetation patterns and environmental gradients in coastal meadows on the Yukon-Kuskokwim Delta, Alaska

USGS Publications Warehouse

Kincheloe, Karen L.; Stehn, Robert A.

1991-01-01

Tundra vegetation and environmental variables were sampled on the Yukon–Kuskokwim delta in western Alaska. On transects extending from intertidal mudflat to upland tundra, we estimated cover by vascular plant species, soil moisture, salinity, relative elevation, depth to permafrost, and distance upriver from the coast. Two-way indicator species analysis (TWINSPAN) classified 21 communities. Ordination by detrended correspondence analysis (DECORANA) revealed a gradient correlated with the combination of elevation, permafrost depth, and salinity along the first axis for both upriver and downriver transects.

Wetlands ecology

NASA Technical Reports Server (NTRS)

Anderson, R. R. (Principal Investigator); Carter, V. L.; Mcginness, J. W., Jr.

1972-01-01

The author has identified the following significant results. The ERTS imagery analyzed provides approximately 2/3 coverage of the test site. Analysis was made using visual methods, density slicing, and multispectral analysis. Preliminary conclusions reached are that most, if not all, of the investigation objectives can be met. Saline and near-saline wetlands can be delineated from ERTS-1 images as the wetland-upland boundaries and land-water interface are clearly defined. Major plant species or communities such as Spartina alterniflora (high and low vigor forms), Spartina patens/Distichlis spicata, and Juncus roemarianus can be discriminated and spoil disposal areas identified.

Riparian zones as havens for exotic plant species in the central grasslands

USGS Publications Warehouse

Stohlgren, T.J.; Bull, K.A.; Otsuki, Yuka; Villa, C.A.; Lee, M.

1998-01-01

In the Central Grasslands of the United States, we hypothesized that riparian zones high in soil fertility would contain more exotic plant species than upland areas of low soil fertility. Our alternate hypothesis was that riparian zones high in native plant species richness and cover would monopolize available resources and resist invasion by exotic species. We gathered nested-scale vegetation data from 40 1 m2subplots (nested in four 1000 m2 plots) in both riparian and upland sites at four study areas in Colorado, Wyoming, and South Dakota (a total of 320 1 m2subplots and 32 1000 m2 plots). At the 1 m2 scale, mean foliar cover of native species was significantly greater (P < 0.001) in riparian zones (36.6% ?? 1.7%) compared to upland sites (28.7% ?? 1.5%), but at this small scale there were no consistent patterns of native and exotic species richness among the four management areas. Mean exotic species cover was slightly higher in upland sites compared to riparian sites (9.0% ?? 3.8% versus 8.2% ?? 3.0% cover). However, mean exotic species richness and cover were greater in the riparian zones than upland sites in three of four management areas. At the 1000 m2 scale, mean exotic species richness was also significantly greater (P < 0.05) in riparian zones (7.8 ?? 1.0 species) compared to upland sites (4.8 ?? 1.0 species) despite the heavy invasion of one upland site. For all 32 plots combined, 21% of the variance in exotic species richness was explained by positive relationships with soil % silt (t = 1.7, P = 0.09) and total foliar cover (t = 2.4, P = 0.02). Likewise, 26% of the variance in exotic species cover (log10 cover) was explained by positive relationships with soil % silt (t = 2.3, P = 0.03) and total plant species richness (t = 2.4, P = 0.02). At landscape scales (four 1000 m2 plots per type combined), total foliar cover was significantly and positively correlated with exotic species richness (r = 0.73, P < 0.05) and cover (r = 0.74, P < 0.05). Exotic species cover (log10 cover) was positively correlated with log10% N in the soil (r = 0.61, P = 0.11) at landscape scales. On average, we found that 85% (??5%) of the total number of exotic species in the sampling plots of a given management area could be found in riparian zones, while only 50% (??8%) were found in upland plots. We conclude that: (1 species-rich and productive riparian zones are particularly invasible in grassland ecosystems; and (2) riparian zones may act as havens, corridors, and sources of exotic plant invasions for upland sites and pose a significant challenge to land managers and conservation biologists.

Distribution of tetraether lipids in agricultural soils - differentiation between paddy and upland management

NASA Astrophysics Data System (ADS)

Mueller-Niggemann, Cornelia; Rahayu Utami, Sri; Marxen, Anika; Mangelsdorf, Kai; Bauersachs, Thorsten; Schwark, Lorenz

2016-03-01

Rice paddies constitute almost a fifth of global cropland and provide more than half of the world's population with staple food. At the same time, they are a major source of methane and therewith significantly contribute to the current warming of Earth's atmosphere. Despite their apparent importance in the cycling of carbon and other elements, however, the microorganisms thriving in rice paddies are insufficiently characterized with respect to their biomolecules. Hardly any information exists on human-induced alteration of biomolecules from natural microbial communities in paddy soils through varying management types (affecting, e.g., soil or water redox conditions, cultivated plants). Here, we determined the influence of different land use types on the distribution of glycerol dialkyl glycerol tetraethers (GDGTs), which serve as molecular indicators for microbial community structures, in rice paddy (periodically flooded) and adjacent upland (non-flooded) soils and, for further comparison, forest, bushland and marsh soils. To differentiate local effects on GDGT distribution patterns, we collected soil samples in locations from tropical (Indonesia, Vietnam and Philippines) and subtropical (China and Italy) sites. We found that differences in the distribution of isoprenoid GDGTs (iGDGTs) as well as of branched GDGTs (brGDGTs) are predominantly controlled by management type and only secondarily by climatic exposition. In general, upland soil had higher crenarchaeol contents than paddy soil, which by contrast was more enriched in GDGT-0. The GDGT-0 / crenarchaeol ratio, indicating the enhanced presence of methanogenic archaea, was 3-27 times higher in paddy soils compared to other soils and increased with the number of rice cultivation cycles per year. The index of tetraethers consisting of 86 carbons (TEX86) values were 1.3 times higher in upland, bushland and forest soils than in paddy soils, potentially due to differences in soil temperature. In all soils brGDGT predominated over iGDGTs with the relative abundance of brGDGTs increasing from subtropical to tropical soils. Higher branched vs. isoprenoid tetraether (BIT) values in paddy soils compared to upland soils together with higher BIT values in soils from subtropical climates indicated effects on the amounts of brGDGT induced by differences in management as well as climate. In acidic soils cyclization ratio of branched tetraethers (CBT) values correlated well with soil pH. In neutral to alkaline soils, however, no correlation but an offset in CBT between paddy and upland managed soils was detected. This is interpreted as indicating soil moisture exerting an additional control on the CBT in these soils. Lower modified methylation index of branched tetraether (MBT') values and temperatures calculated from this (TMC) in paddy soils compared to upland soils are attributed to a management-induced (e.g. enhanced soil moisture via flooding) effect on mean annual soil temperature (MST).

Big Bend Dam/Lake Sharpe Master Plan, Missouri River, South Dakota: Update of Design Memorandum MB-90

DTIC Science & Technology

2003-10-01

supplement the existing food sources and nesting habitat for upland species . Cottonwood, Russian olive, green ash and willow trees , and chokecherry and...establishment of dense nesting cover, food plots, and trees for upland game species . Food plots of corn, milo, millet, sunflower, and cane and...habitat for upland and big game species . Development Needs. • Plant trees and shrubs to increase woody vegetation and to improve cover; and

Summary of the US Army Corps of Engineers/US Environmental Protection Agency Field Verification Program

DTIC Science & Technology

1988-10-01

sites tend to be colonized by aquatic organisms adapted to an intertidal existence and by typical wetland plants. These plants may or may not be the...the upland site and within the intertidal range for the wetland site. Site Selection and Design Site selection 15. Acceptable sites for upland and... intertidal range. Along one side of the site, a sandbag dike was constructed that could be removed after filling to provide easy tidal interchange

Initial experiences utilizing exotic landrace germplasm in an upland cotton breeding program

USDA-ARS?s Scientific Manuscript database

A critical objective of plant breeding programs is accessing new sources of genetic variation. In upland cotton, one of the relatively untapped sources of genetic variation is maintained in the USDA-ARS cotton germplasm collection and is the exotic landrace collection. Photoperiod sensitivity is a m...

Responses of Isolated Wetland Herpetofauna to Upland Forest Management

DOE Office of Scientific and Technical Information (OSTI.GOV)

Russell, K.R.; Hanlin, H.G.; Wigley, T.B.

2002-01-02

Measurement of responses of herpetofauna at isolated wetlands in the Coastal Plain of South Carolina to disturbance of adjacent loblolly pine forest. Many species of isolated wetland herpetofauna in the Southeastern Coastal Plain may tolerate some disturbance in adjacent upland stands. Responses of isolated wetland herpetofauna to upland silviculture and the need for adjacent forested buffers likely depend on the specific landscape context in which the wetlands occur and composition of the resident herpetofaunal community.

Birds of Upland Oak Forests in the Arkansas Ozarks: Present Community Structure and Potential Impacts of Burning, Borers, and Forestry Practices

Treesearch

Kimberly Smith; Michael Mlodinow; Janet S. Self; Thomas M. Haggerty; Tamara R. Hocut

2004-01-01

Based on published works, our own research, and the U.S. Forest Service’s R8 Bird database, we characterize breeding bird communities in mesic and xeric upland hardwood forests of the Arkansas Ozarks. Although 59 species have been recorded as breeding, typical breeding assemblages in mesic forests are 20-25 species, with only 5 species commonly found in xeric forests....

Ecophysiological responses to excess iron in lowland and upland rice cultivars.

PubMed

Müller, Caroline; Silveira, Solange Ferreira da Silveira; Daloso, Danilo de Menezes; Mendes, Giselle Camargo; Merchant, Andrew; Kuki, Kacilda Naomi; Oliva, Marco Antonio; Loureiro, Marcelo Ehlers; Almeida, Andréa Miyasaka

2017-12-01

Iron (Fe) is an essential nutrient for plants but under high concentrations, such as that found naturally in clay and waterlogged soils, its toxic effect can limit production. This study aimed to investigate the stress tolerance responses exhibited by different rice cultivars. Both lowland and upland cultivars were grown under excess Fe and hypoxic conditions. Lowland cultivars showed higher Fe accumulation in roots compared with upland cultivars suggesting the use of different strategies to tolerate excess Fe. The upland Canastra cultivar displayed a mechanism to limit iron translocation from roots to the shoots, minimizing leaf oxidative stress induced by excess Fe. Conversely, the cultivar Curinga invested in the increase of R1/A, as an alternative drain of electrons. However, the higher iron accumulation in the leaves, was not necessarily related to high toxicity. Nutrient uptake and/or utilization mechanisms in rice plants are in accordance with their needs, which may be defined in relation to crop environments. Alterations in the biochemical parameters of photosynthesis suggest that photosynthesis in rice under excess Fe is primarily limited by biochemical processes rather than by diffusional limitations, particularly in the upland cultivars. The electron transport rate, carboxylation efficiency and electron excess dissipation by photorespiration demonstrate to be good indicators of iron tolerance. Altogether, these chemical and molecular patterns suggests that rice plants grown under excess Fe exhibit gene expression reprogramming in response to the Fe excess per se and in response to changes in photosynthesis and nutrient levels to maintain growth under stress. Copyright © 2017 Elsevier Ltd. All rights reserved.

Planting Wetland Species On Upland Soil

Treesearch

T. A. Harrington

1965-01-01

Baldcypress (Taxodium distichum var. distichum), pondcypress (T. distichum var. nutans), and blackgum(Nyssa sylvatica) can be successfullyplanted as bare-rooted, l- 0 stock on upland soils in northeast Florida according to a study on the Olustee Experimental Forest.This research was conducted with the cooperation of the Florida Board of Forestry. After three growing...

Proteomic analysis of upland rice (Oryza sativa L.) exposed to intermittent water deficit.

PubMed

Rabello, Fernanda R; Villeth, Gabriela R C; Rabello, Aline R; Rangel, Paulo H N; Guimarães, Cleber M; Huergo, Luciano F; Souza, Emanuel M; Pedrosa, Fabio O; Ferreira, Márcio E; Mehta, Angela

2014-06-01

Rice is the most important crop consumed all over the world. In Brazil, irrigated rice covers 50 % of the rice producing area and is responsible for 75 % of the national production. Upland rice covers most of the remaining area, and is therefore, a very important production system in the country. In the present study, we have used the drought tolerant upland rice variety Três Meses Antigo to investigate the proteomic changes that occur during drought stress. Plants were submitted to drought by the reposition of 50 % of the water lost daily. Twenty days after the beginning of the drought stress period, leaves were harvested and used for protein extraction. The 2D maps obtained from treated and control plants revealed 408 reproducible spots, 44 of which were identified by mass spectrometry, including 15 differential proteins. Several unaltered proteins were also identified (39 spots) and were mainly involved in photosynthesis. Taken together, the results obtained suggest that the tolerant upland rice up-regulates anti-oxidant and energy production related proteins in order to cope with water deficit.

Nitrogen and Phosphorous Uptake in Plant Biomass of Experimental Bioretention Systems in Utah

NASA Astrophysics Data System (ADS)

Sapkota, P.

2016-12-01

There is keen interest in implementing bioretention systems for stormwater management in an arid climate as they have proven to reduce toxicity from stormwater. Nitrogen is prevalent in urban stormwater, and plants and soil in bioretention treat stormwater before they enter natural waterways. A limited number of studies have focused on quantifying nutrient accumulation in plants. We quantified Total Nitrogen (TN), Total carbon (TC), and Total Phosphorous (TP) uptake in plants biomass of bioretention systems of semi-arid climate. The designed bioretention units housed at the University of Utah have three different vegetation types: Utah native plants (upland), no plants (control) and wetland plants (wetland grasses and reeds). The bioretention units are designed to capture 95% of the runoff from an impervious area of 220 m2. The soil is composed of 63% sand, 23% silt, and 14% clay. We compared TN, TC, and TP accumulation in plant biomass of upland and wetland systems. Two set of samples were taken for this study. For the first set, plants were completely destroyed in several upland and wetland bioretention units and TN and TP was quantified in their overall biomass. For the second set, TN and TP uptake were quantified in non-destructed samples on a monthly basis. To determine biomass of non-destructed samples, and TN, TP uptake, allometric equations were developed using plant height, crown diameter, and stem diameter measured each month from May 2015 to Dec 2015. Isotope ratio mass spectrometry (IRMS) was used to quantify TN and lachat colorimetry was used to quantify TP in all plant samples. TN, TC, and TP results for the destructed showed similar trends in three upland and wetland systems .i.e. when one increased other also increased. TN, TC analysis on plant samples over a seven months period showed that TN and TC decreased in summer, but it was significantly higher during winter. TN and TC on non-destructed samples spiked towards late spring, and woody plants had lower but better-maintained biomasses, TN and TC than grasses. Overall, the results from this experiment showed which plants are more efficient in foraging nitrogen and phosphorus from soil, and which plants performed best in nitrogen and phosphorous removal from bioretention in a semi-arid climate.

Changes in faunal and vegetation communities along a soil calcium gradient in northern hardwood forests

USGS Publications Warehouse

Beier, Colin M.; Woods, Anne M.; Hotopp, Kenneth P.; Gibbs, James P.; Mitchell, Myron J.; Dovciak, Martin; Leopold, Donald J.; Lawrence, Gregory B.; Page, Blair D.

2012-01-01

Depletion of Ca from forest soils due to acidic deposition has had potentially pervasive effects on forest communities, but these impacts remain largely unknown. Because snails, salamanders, and plants play essential roles in the Ca cycle of northern hardwood forests, we hypothesized that their community diversity, abundance, and structure would vary with differences in biotic Ca availability. To test this hypothesis, we sampled 12 upland hardwood forests representing a soil Ca gradient in the Adirondack Mountains, New York (USA), where chronic deposition has resulted in acidified soils but where areas of well-buffered soils remain Ca rich due to parent materials. Along the gradient of increasing soil [Ca2+], we observed increasing trends in snail community richness and abundance, live biomass of redback salamanders (Plethodon cinereus (Green, 1818)), and canopy tree basal area. Salamander communities were dominated by mountain dusky salamanders (Desmognathus ochrophaeus Cope, 1859) at Ca-poor sites and changed continuously along the Ca gradient to become dominated by redback salamanders at the Ca-rich sites. Several known calciphilic species of snails and plants were found only at the highest-Ca sites. Our results indicated that Ca availability, which is shaped by geology and acidic deposition inputs, influences northern hardwood forest ecosystems at multiple trophic levels, although the underlying mechanisms require further study.

The Yellowstone hotspot, Greater Yellowstone ecosystem, and human geography

USGS Publications Warehouse

Pierce, Kenneth L.; Despain, Don G.; Morgan, Lisa A.; Good, John M.; Morgan Morzel, Lisa Ann

2007-01-01

The effects of the Yellowstone hotspot also profoundly shaped the human history in the GYE. Uplift associated with the hotspot elevates the GYE to form the Continental Divide, and streams drain radially outward like spokes from a hub. Inhabitants of the GYE 12,000–10,000 years ago, as well as more recent inhabitants, followed the seasonal green-up of plants and migrating animals up into the mountain areas. During European immigration, people settled around Yellowstone in the lower parts of the drainages and established roads, irrigation systems, and cultural associations. The core Yellowstone highland is too harsh for agriculture and inhospitable to people in the winter. Beyond this core, urban and rural communities exist in valleys and are separated by upland areas. The partitioning inhibits any physical connection of communities, which in turn complicates pursuit of common interests across the whole GYE. Settlements thus geographically isolated evolved as diverse, independent communities

Individual Tree Release and Enrichment Planting in Young Natural Upland Hardwoods

Treesearch

Daniel J. Robison; Jamie L. Schuler; Larry Jervis; Joseph L. Cox; Peter J. Birks

2004-01-01

Individual naturally regenerated trees of red oak, white oak, and yellow poplar in upland North Carolina Piedmont hardwood stands aged 1 to 13 were treated with mechanical clearing, herbicide of competition, and fertilization. These treatments produced significant changes in height and diameter growth 2 to 3 years posttreatment. Generally, height growth was negatively...

Bird response to fire severity and repeated burning in upland hardwood forest

Treesearch

Cathryn H. Greenberg; Thomas A. Waldrop; Joseph Tomcho; Ross J. Phillips; Dean Simon

2012-01-01

Prescribed burning is a common management tool for upland hardwood forests, with wildlife habitat improvement an often cited goal. Fire management for wildlife conservation requires understanding how species respond to burning at different frequencies, severities, and over time. In an earlier study, we experimentally assessed how breeding bird communities and species...

Ecology of bottomland hardwood swamps of the southeast: a community profile

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wharton, C.H.; Kitchens, W.M.; Pendleton, E.C.

1982-03-01

This report synthesizes extant literature detailing the ecology of bottomland hardwood swamps in the Southeast. The geographic scope focuses the report to the hardwoods occupying the floodplains of the rivers whose drainages originate in the Appalachian Mountains/Piedmont and Coastal Plain (NC, SC, GA, and FL). The origin and dynamics of the floodplains are described and related to hydrology and physiographic provinces. Further, the biogeochemistry and interactions between the riverine and floodplain environments are discussed in conjunction with floodplain biology. Plant and animal community structure and ecological processes (productivity) are detailed and organized by ecological zones. The final chapter discusses themore » ecological value of the floodplain ecosystems and the nature of their relationships to adjacent uplands, downstream coastal estuaries and the atmosphere.« less

Effects of grazing on nesting by upland sandpipers in southcentral North Dakota

USGS Publications Warehouse

Bowen, Bonnie S.; Kruse, Arnold D.

1993-01-01

Grazing by livestock is often used to reduce litter, improve plant vigor, and alter plant species composition, but additional information is needed on the effects of these management practices on upland-nesting birds. Thus, we conducted an experimental study of the effect of grazing on nest density and nest success of upland sandpipers (Bartramia longicauda) in southcentral North Dakota from 1981 to 1987. Our experimental design consisted of 4 treatments and 1 control, each applied to 1 field in each of 3 study areas. The treatments represented options available to grassland managers: spring grazing, autumn grazing, autumn-and-spring grazing, season-long grazing, and control (ungrazed during the study). Nests (n = 342) were found by searching study areas with a cable-chain drag. Nest density was lower (P = 0.006) for treatments where cattle were present (spring, autumn-and-spring, and season-long) than where cattle were not present (autumn and control) during the nesting season. We concluded that grazing during the nesting season reduced the nest density of upland sandpipers. Nest success varied among years (P = 0.01) and was low in the first year of grazing and higher at the end of the study period. We found little evidence that the grazing treatment influenced nest success. We recommend that public lands with breeding populations of upland sandpipers include a complex of fields under various management practices, including fields undisturbed during the nesting season.

Plant materials for riparian revegetation

Treesearch

J. Chris Hoag; Thomas D. Landis

2002-01-01

Increased public awareness and concern have prompted new efforts in riparian revegetation using streambank bioengineering techniques. Planting in a riparian zone is very different than planting on upland sites. Riparian planting zones should be used to ensure that the vegetation is planted in the appropriate location so that the planting does not create more problems...

Changes in Microbial Nitrogen Across a 100-Year Chronosequence of Upland Hardwood Forests

Treesearch

Travis W. Idol; Phillip E. Pope; Felix, Jr. Ponder

2002-01-01

Soil microorganisms mediate many of the major processes involved in soil N cycling. Also, they are strong competitors with plants for available soil N. Thus, changes in microbial N because of forest harvesting may have significant impacts on N availability and overall forest N cycling. A chronosequence of upland hardwood forest stands in southern Indiana, USA, ranging...

The state of mixed shortleaf pine-upland oak management in Missouri

Treesearch

Elizabeth M. Blizzard; David R. Larsen; Daniel C. Dey; John M. Kabrick; David Gwaze

2007-01-01

Mixed shortleaf pine-upland oak stands allow flexibility in type and timing of regeneration, release, and harvesting treatments for managers; provide unique wildlife and herbaceous community niches; and increase visual diversity. Most of the research to date focused on growing pure pine or oak stands, with little research on today's need to grow pine-oak mixtures...

Overexpression of a phospholipase (OsPLDα1) for drought tolerance in upland rice (Oryza sativa L.).

PubMed

Abreu, Fernanda Raquel Martins; Dedicova, Beata; Vianello, Rosana Pereira; Lanna, Anna Cristina; de Oliveira, João Augusto Vieira; Vieira, Ariadna Faria; Morais, Odilon Peixoto; Mendonça, João Antônio; Brondani, Claudio

2018-05-30

This work aimed to evaluate the drought tolerance of transformed plants of the cultivar BRSMG Curinga that overexpress the rice phospholipase D α1 (OsPLDα1) gene. The productivity of independent transformation event plants of the OsPLDα1 gene was evaluated in an experiment where 19 days of water deficit were applied at the reproductive stage, a very strict growing condition for upland rice. The non-genetically modified cultivar (NGM) under drought treatment reduced productivity by 89% compared with that under irrigated treatment, whereas transformed plants (PLDα1_E2) reduced productivity by only 41%. After the drought treatment, the PLDα1_E2 plants productivity was five times greater than that of the NGM plant. Moreover, no adverse effects on growth and development of the transgenic plants were observed. Seven days after the resumption of irrigation, PLDα1_E2 plants had higher stomatal conductance, greater photosynthetic rate, and transpiration rate than did NGM plants, as well as a higher expression level of the OsPLDα1 gene. A delay in the senescence process was observed in these PLDα1_E2 plants, and this was determined for the recovery of photosynthesis, with greater expression of the Rubisco and lower expression of the SOD. This finding was suggestive of decreased oxidative stress, probably due to gas exchange by the partial closure of the stomata of these transformed plants, which prevented the formation of reactive oxygen species. OsPLDα1 gene overexpression resulted in a reduction in production loss under severe water deficit and revealed a possibility for the development of upland rice cultivars that are more tolerant to extreme drought conditions.

Ethnobotany of dye plants in Dong communities of China

PubMed Central

2014-01-01

Background Dyes derived from plants have an extensive history of use for coloring food and clothing in Dong communities and other indigenous areas in the uplands of China. In addition to use as coloring agents, Dong communities have historically utilized dye plants for their value for enhancing the nutritive, medicinal and preservative properties of foods. However, the persistence of plant-derived dyes and associated cultural practices and traditional knowledge is threatened with rapid socio-economic change in China. Research is needed to document the ethnobotany of dye plants in indigenous communities towards their conservation and potential commercialization as a sustainable means of supporting local development initiatives. Methods Semi-structured surveys on plants used for coloring agents and associated traditional knowledge were conducted in fifteen Dong villages of Tongdao County in Hunan Province of South Central China during 2011–2012. Transect walks were carried out with key informants identified from semi-structured surveys to collect samples and voucher specimens for each documented plant species for taxonomic identification. Results Dong households at the study sites utilize the flowers, bark, stems, tubers and roots of 13 plant species from 9 families as dyes to color their customary clothing and food. Out of the documented plants, a total of 7 are used for coloring food, 3 for coloring clothing and 3 for both food and clothing. Documented plants consist of 3 species that yield black pigments, 3 for brownish red/russet pigments, 3 for red pigments, 2 for dark blue pigments and 2 for yellow pigments. In addition to dyes, the plants have multiple uses including medicinal, ornamental, sacrificial, edible, and for timber. Conclusions The use of dyes derived from plants persists at the study sites for their important role in expressing Dong cultural identity through customary clothing and food. Further research is needed to evaluate the safety of dye plants, their efficacy in enhancing food items and their commercial potential. Conservation policies and management plans are called for to preserve these ethnobotanical resources in a sustainable manner that supports local livelihoods while maintaining cultural practices. PMID:24552267

Ethnobotany of dye plants in Dong communities of China.

PubMed

Liu, Yujing; Ahmed, Selena; Liu, Bo; Guo, Zhiyong; Huang, Weijuan; Wu, Xianjin; Li, Shenghua; Zhou, Jiangju; Lei, Qiyi; Long, Chunlin

2014-02-19

Dyes derived from plants have an extensive history of use for coloring food and clothing in Dong communities and other indigenous areas in the uplands of China. In addition to use as coloring agents, Dong communities have historically utilized dye plants for their value for enhancing the nutritive, medicinal and preservative properties of foods. However, the persistence of plant-derived dyes and associated cultural practices and traditional knowledge is threatened with rapid socio-economic change in China. Research is needed to document the ethnobotany of dye plants in indigenous communities towards their conservation and potential commercialization as a sustainable means of supporting local development initiatives. Semi-structured surveys on plants used for coloring agents and associated traditional knowledge were conducted in fifteen Dong villages of Tongdao County in Hunan Province of South Central China during 2011-2012. Transect walks were carried out with key informants identified from semi-structured surveys to collect samples and voucher specimens for each documented plant species for taxonomic identification. Dong households at the study sites utilize the flowers, bark, stems, tubers and roots of 13 plant species from 9 families as dyes to color their customary clothing and food. Out of the documented plants, a total of 7 are used for coloring food, 3 for coloring clothing and 3 for both food and clothing. Documented plants consist of 3 species that yield black pigments, 3 for brownish red/russet pigments, 3 for red pigments, 2 for dark blue pigments and 2 for yellow pigments. In addition to dyes, the plants have multiple uses including medicinal, ornamental, sacrificial, edible, and for timber. The use of dyes derived from plants persists at the study sites for their important role in expressing Dong cultural identity through customary clothing and food. Further research is needed to evaluate the safety of dye plants, their efficacy in enhancing food items and their commercial potential. Conservation policies and management plans are called for to preserve these ethnobotanical resources in a sustainable manner that supports local livelihoods while maintaining cultural practices.

Effects of habitat management treatments on plant community composition and biomass in a Montane wetland

USGS Publications Warehouse

Austin, J.E.; Keough, J.R.; Pyle, W.H.

2007-01-01

Grazing and burning are commonly applied practices that can impact the diversity and biomass of wetland plant communities. We evaluated the vegetative response of wetlands and adjacent upland grasslands to four treatment regimes (continuous idle, fall prescribed burning followed by idle, annual fall cattle grazing, and rotation of summer grazing and idle) commonly used by the U.S. Fish and Wildlife Service. Our study area was Grays Lake, a large, montane wetland in southeastern Idaho that is bordered by extensive wet meadows. We identified seven plant cover types, representing the transition from dry meadow to deep wetland habitats: mixed deep marsh, spikerush slough, Baltic rush (Juncus balticus), moist meadow, alkali, mesic meadow, and dry meadow. We compared changes in community composition and total aboveground biomass of each plant cover type between 1998, when all units had been idled for three years, and 1999 (1 yr post-treatment) and 2000 (2 yr post-treatment). Analysis using non-metric multidimensional scaling indicated that compositional changes varied among cover types, treatments, and years following treatment. Treatment-related changes in community composition were greatest in mixed deep marsh, Baltic rush, and mesic meadow. In mixed deep marsh and Baltic rush, grazing and associated trampling contributed to changes in the plant community toward more open water and aquatic species and lower dominance of Baltic rush; grazing and trampling also seemed to contribute to increased cover in mesic meadow. Changing hydrological conditions, from multiple years of high water to increasing drought, was an important factor influencing community composition and may have interacted with management treatments. Biomass differed among treatments and between years within cover types. In the wettest cover types, fall burning and grazing rotation treatments had greater negative impact on biomass than the idle treatment, but in drier cover types, summer grazing stimulated biomass production. Our results illustrate the spatial and temporal complexity of the transition between dry meadow and wetland habitats, and variable interactions among plant communities, treatments, and annual wetland conditions. ?? 2007, The Society of Wetland Scientists.

Genetic variation in salt tolerance during seed germination in a backcross inbred line population and advanced breeding lines derived from upland cotton x pima cotton

USDA-ARS?s Scientific Manuscript database

Seed germination is a crucial phase of the plant life cycle that affects its establishment and productivity. However, information on salt tolerance at this phase is limited. Pima cotton (Gossypium barbadense L.) may be more salt tolerant during germination than Upland cotton (G. hirsutum L.) based o...

Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton.

PubMed

Magwanga, Richard Odongo; Lu, Pu; Kirungu, Joy Nyangasi; Lu, Hejun; Wang, Xingxing; Cai, Xiaoyan; Zhou, Zhongli; Zhang, Zhenmei; Salih, Haron; Wang, Kunbo; Liu, Fang

2018-01-15

Late embryogenesis abundant (LEA) proteins are large groups of hydrophilic proteins with major role in drought and other abiotic stresses tolerance in plants. In-depth study and characterization of LEA protein families have been carried out in other plants, but not in upland cotton. The main aim of this research work was to characterize the late embryogenesis abundant (LEA) protein families and to carry out gene expression analysis to determine their potential role in drought stress tolerance in upland cotton. Increased cotton production in the face of declining precipitation and availability of fresh water for agriculture use is the focus for breeders, cotton being the backbone of textile industries and a cash crop for many countries globally. In this work, a total of 242, 136 and 142 LEA genes were identified in G. hirsutum, G. arboreum and G. raimondii respectively. The identified genes were classified into eight groups based on their conserved domain and phylogenetic tree analysis. LEA 2 were the most abundant, this could be attributed to their hydrophobic character. Upland cotton LEA genes have fewer introns and are distributed in all chromosomes. Majority of the duplicated LEA genes were segmental. Syntenic analysis showed that greater percentages of LEA genes are conserved. Segmental gene duplication played a key role in the expansion of LEA genes. Sixty three miRNAs were found to target 89 genes, such as miR164, ghr-miR394 among others. Gene ontology analysis revealed that LEA genes are involved in desiccation and defense responses. Almost all the LEA genes in their promoters contained ABRE, MBS, W-Box and TAC-elements, functionally known to be involved in drought stress and other stress responses. Majority of the LEA genes were involved in secretory pathways. Expression profile analysis indicated that most of the LEA genes were highly expressed in drought tolerant cultivars Gossypium tomentosum as opposed to drought susceptible, G. hirsutum. The tolerant genotypes have a greater ability to modulate genes under drought stress than the more susceptible upland cotton cultivars. The finding provides comprehensive information on LEA genes in upland cotton, G. hirsutum and possible function in plants under drought stress.

Management options for songbirds using the oak shelterwood-burn technique in upland forests of the Southeastern United States

Treesearch

J. Drew Lanham; Patrick D. Keyser; Patrick H. Brose; David H. Van Lear

2002-01-01

The shelterwood-burn technique is a novel method for regenerating oak-dominated stands on some upland sites while simultaneously minimizing undesirable hardwood intrusion with prescribed fire. Management options available within an oak shelterwood-burn regime will create variably structured habitats that may potentially harbor avian communities of mature forest and...

Changes in the disturbance regime of upland yellow pine stands in the Southern Appalachian Mountains during the 20th century

Treesearch

Patrick H. Brose; Thomas A. Waldrop

2006-01-01

A dendrochronology study was conducted in four upland yellow pine communities in Georgia, South Carolina, and Tennessee to determine whether the number and frequency of stand-level disturbances had changed since 1900. Increment cores of Table Mountain pine (Pinus pungens Lamb.), pitch pine (P. rigida Mill.), shortleaf pine (

The Uplands after Neoliberalism?--The Role of the Small Farm in Rural Sustainability

ERIC Educational Resources Information Center

Shucksmith, Mark; Ronningen, Katrina

2011-01-01

The modernist project foresaw no role for small farms, but this can no longer be regarded as axiomatic as neoliberalism enters what Peck et al. call its "zombie phase". This paper asks what contribution small farms in the uplands can make to societies' goals, what role they might play in the sustainability of rural communities in such…

A Continuation of Base-Line Studies for Environmentally Monitoring Space Transportation System (STS) at John F. Kennedy Space Center. Volume 1; Terrestrial Community Analysis

NASA Technical Reports Server (NTRS)

Stout, I. J.

1979-01-01

Vegetation and small mammal populations in or around the Merritt Island area were studied. Thirty sites were selected from plant communities which were relatively free of logging, grazing, and clearing operations. The vegetative analysis was designed to yield a quantitative description and ecological explanation of the major types of upland vegetation in order to determine the possible future effects of NASA space activities on them. Changes in the relative abundance of small mammal populations, species diversity, standing crop biomass, reproductive activity, and other demographic features were documented in order to gather sufficient information on these populations so that it would be possible to detect even the smaller nonnatural behavior changes in the mammals which might be attributable to NASA space activities.

Methane production potential and microbial community structure for different forest soils

NASA Astrophysics Data System (ADS)

Matsumoto, Y.; Ueyama, M.; Kominami, Y.; Endo, R.; Tokumoto, H.; Hirano, T.; Takagi, K.; Takahashi, Y.; Iwata, H.; Harazono, Y.

2017-12-01

Forest soils are often considered as a methane (CH4) sink, but anaerobic microsites potentially decrease the sink at the ecosystem scale. In this study, we measured biological CH4 production potential of soils at various ecosystems, including upland forests, a lowland forest, and a bog, and analyzed microbial community structure using 16S ribosomal RNA (rRNA) genes. Three different types of soil samples (upland, bank of the stream, and center of the stream) were collected from Yamashiro forest meteorology research site (YMS) at Kyoto, Japan, on 11 May 2017. The soils were incubated at dark and anaerobic conditions under three different temperatures (37°C, 25°C, and 10°C) from 9 June 2017. The upland soils emitted CH4 with largest yields among the three soils at 37°C and 25°C, although no CH4 emission was observed at 10°C. For all temperature ranges, the emission started to increase with a 14- to 20-days lag after the start of the incubation. The lag indicates a slow transition to anaerobic conditions; as dissolved oxygen in water decreased, the number and/or activity of anaerobic bacteria like methanogens increased. The soils at the bank and center of the stream emitted CH4 with smaller yields than the upland soils in the three temperature ranges. The microbial community analyses indicate that methanogenic archaea presented at the three soils including the aerobic upland soil, but compositions of methanogenic archaea were different among the soils. In upland soils, hydrogenotrophic methanogens, such as Methanobacterium and Methanothermobacter, consisted almost all of the total methanogen detected. In the bank and center of the stream, soils contained approximately 10-25% of acetoclastic methanogens, such as Methanosarcina and Methanosaeta, among the total methanogen detected. Methanotrophs, a genus of Methanobacteriaceae, was appeared in the all types of soils. We will present results from same incubation and 16S rRNA analyses for other ecosystems, including a larch forest on volcanic soils, a young larch forest on Gleyic Cambisol, and a boreal bog and a lowland forest on permafrost. Comparing various soils from temperate and boreal ecosystems, we will discuss differences of biogenic CH4 production potential among the soils with the microbial community analyses.

Alaska Melilotus invasions: Distribution, origin, and susceptibility of plant communities

USGS Publications Warehouse

Conn, J.S.; Beattie, K.L.; Shephard, M.A.; Carlson, M.L.; Lapina, I.; Hebert, M.; Gronquist, R.; Densmore, R.; Rasy, M.

2008-01-01

Melilotus alba and M. officinalis were introduced to Alaska in 1913 as potential forage crops. These species have become naturalized and are now invading large, exotic plant-free regions of Alaska. We determined distributions of M. alba and M. officinalis in Alaska from surveys conducted each summer from 2002 to 2005. Melilotus alba and M. officinalis occurred at 721 and 205 sites, respectively (39,756 total sites surveyed). The northward limit for M. alba and M. officinalis was 67.15??N and 64.87??N, respectively. Both species were strictly associated with soil disturbance. Melilotus alba extended no farther than 15 m from road edges except where M. alba on roadsides met river floodplains and dispersed downriver (Matanuska and Nenana Rivers). Melilotus has now reached the Tanana River, a tributary of the Yukon River. Populations on floodplains were most extensive on braided sections. On the Nenana River, soil characteristics did not differ between where M. alba was growing versus similar areas where it had not yet reached. The pH of river soils (7.9-8.3) was higher than highway soils (7.3). Upland taiga plant communities grow on acid soils which may protect them from invasion by Melilotus, which prefer alkaline soils; however, early succession communities on river floodplains are susceptible because soils are alkaline. ?? 2008 Regents of the University of Colorado.

Survival and Height Growth of Tamarack Planted in Northern Wisconsin

Treesearch

Richard M. Jeffers

1975-01-01

Tamarack trees from certain seed sources survived and gew well when planted on good upland sites in northern Wisconsin. Tamarack appears to have potential for short rotation pulpwood production in the Lake States.

Contrasting Effects of Extreme Drought and Snowmelt Patterns on Mountain Plants along an Elevation Gradient.

PubMed

Rosbakh, Sergey; Leingärtner, Annette; Hoiss, Bernhard; Krauss, Jochen; Steffan-Dewenter, Ingolf; Poschlod, Peter

2017-01-01

Despite the evidence that increased frequency and magnitude of extreme climate events (ECE) considerably affect plant performance, there is still a lack of knowledge about how these events affect mountain plant biodiversity and mountain ecosystem functioning. Here, we assessed the short-term (one vegetation period) effects of simulated ECEs [extreme drought (DR), advanced and delayed snowmelt (AD and DE), respectively] on the performance of 42 plant species occurring in the Bavarian Alps (Germany) along an elevational gradient of 600-2000 m a.s.l. in terms of vegetative growth and reproduction performance. We demonstrate that plant vegetative and generative traits respond differently to the simulated ECEs, but the nature and magnitude treatment effects strongly depend on study site location along the elevational gradient, species' altitudinal origin and plant functional type (PFT) of the target species. For example, the negative effect of DR treatment on growth (e.g., lower growth rates and lower leaf nitrogen content) and reproduction (e.g., lower seed mass) was much stronger in upland sites, as compared to lowlands. Species' response to the treatments also differed according to their altitudinal origin. Specifically, upland species responded negatively to extreme DR (e.g., lower growth rates and lower leaf carbon concentrations, smaller seed set), whereas performance of lowland species remained unaffected (e.g., stable seed set and seed size) or even positively responded (e.g., higher growth rates) to that treatment. Furthermore, we were able to detect some consistent differences in responses to the ECEs among three PFTs (forbs, graminoids, and legumes). For instance, vegetative growth and sexual reproduction of highly adaptable opportunistic graminoids positively responded to nearly all ECEs, likely on the costs of other, more conservative, forbs and legumes. Our results suggest that ECEs can significantly modify the performance of specific plant groups and therefore lead to changes in plant community structure and composition under ongoing climate change. Our study therefore underlines the need for more experimental studies on the effects of extreme climate events to understand the potential consequences of climate change for the alpine ecosystem.

Water Source Utilization of Hammock and Pine Rockland Plant Communities in the Everglades, USA.

NASA Astrophysics Data System (ADS)

Saha, A. K.; Sternberg, L.; Miralles-Wilhelm, F.

2007-12-01

South Florida has a mosaic of plant communities resulting from topographical differences, spatially varying hydroperiods and fire. The only plant communities not flooded in the wet season are hardwood hammocks and often pine rocklands. Natural fires burn off litter accumulated in pine rocklands, with the exception of organic matter in sinkholes in the limestone bedrock. This relative lack of soil is thought to constrain pineland plants in the Everglades to depend upon groundwater that is typically low in nutrients. In contrast, adjoining hardwood hammocks have accumulated an organic soil layer that traps rainwater and nutrients. Plants in hammocks may be able to utilize this water and thereby access nutrients present in the litter. Hammocks are thus viewed as localized areas of high nutrients and instances of vegetation feedback upon the oligotrophic everglades landscape enabling establishment and survival of flood-intolerant tropical hardwood species. This study examines water source use and couples it to foliar nutrient concentrations of plants found in hammocks and pinelands. We examined the δ2H and δ18O of stem waters in plants in Everglades National Park and compared those with the δ2H and δ18O of potential water sources. In the wet season hammock plants accessed both groundwater and water in the surface organic soil layer while in the dry season they relied more on groundwater. A similar seasonal shift was observed in pineland plants; however groundwater constituted a much higher proportion of total water uptake throughout the year under observation. Concomitant with differential water utilization by hammock and pineland plant communities, we observed hammock plants having a significantly higher annual mean foliar N and P concentration than pineland plants. Most hammock species are intolerant of flooded soils and are thus constrained by the high water table in the wet season, yet access the lowered groundwater table in the dry season due to drying up of surface soilwater. This dependence on a relatively narrow seasonal range of water table depth has important implications for South Florida water resource management that can affect these ecologically important upland communities in the Everglades. Being the only emergent areas in the wet season, hammocks provide habitat for a wide range of flora and fauna.

9 CFR 146.6 - Specific provisions for participating slaughter plants.

Code of Federal Regulations, 2014 CFR

2014-01-01

... upland game bird, commercial waterfowl, meat-type chicken, and meat-type turkey slaughter plants that are... participate in the Plan. (b) To participate in the Plan, meat-type chicken, meat-type turkey, and commercial...

9 CFR 146.6 - Specific provisions for participating slaughter plants.

Code of Federal Regulations, 2013 CFR

2013-01-01

... upland game bird, commercial waterfowl, meat-type chicken, and meat-type turkey slaughter plants that are... participate in the Plan. (b) To participate in the Plan, meat-type chicken, meat-type turkey, and commercial...

9 CFR 146.6 - Specific provisions for participating slaughter plants.

Code of Federal Regulations, 2011 CFR

2011-01-01

... upland game bird, commercial waterfowl, meat-type chicken, and meat-type turkey slaughter plants that are... participate in the Plan. (b) To participate in the Plan, meat-type chicken, meat-type turkey, and commercial...

9 CFR 146.6 - Specific provisions for participating slaughter plants.

Code of Federal Regulations, 2012 CFR

2012-01-01

... upland game bird, commercial waterfowl, meat-type chicken, and meat-type turkey slaughter plants that are... participate in the Plan. (b) To participate in the Plan, meat-type chicken, meat-type turkey, and commercial...

Community type classification of forest vegetation in young, mixed stands, interior Alaska.

Treesearch

Andrew Youngblood

1993-01-01

A total of 53 upland mixed communities were sampled and classified into five community types: Populus tremuloides/Arctostaphylos uva-ursi, Populus tremuloides/Shepherdla canadensis, Betula papyrifera-Populus tremuloides/Viburnum edule, Betula papyrifera-Populus tremuloldes/Alnus crispa and Picea glauca-Betula papyrlfera/Hylocomlum splendens. Community types were...

Habitat and landscape characteristics underlying anuran community structure along an urban-rural gradient.

PubMed

Pillsbury, Finn C; Miller, James R

2008-07-01

Urbanization has been cited as an important factor in worldwide amphibian declines, and although recent work has illustrated the important influence of broad-scale ecological patterns and processes on amphibian populations, little is known about the factors structuring amphibian communities in urban landscapes. We therefore examined amphibian community responses to wetland habitat availability and landscape characteristics along an urban-rural gradient in central Iowa, USA, a region experiencing rapid suburban growth. We conducted call surveys at 61 wetlands to estimate anuran calling activity, and quantified wetland habitat structure and landscape context. We used canonical correspondence analysis (CCA) to examine patterns in anuran community structure and identify the most important variables associated with those patterns. Urban density at the landscape scale had a significant negative influence on overall anuran abundance and diversity. While every species exhibited a decrease in abundance with increasing urban density, this pattern was especially pronounced for species requiring post-breeding upland habitats. Anurans most affected by urbanization were those associated with short hydroperiods, early breeding activity, and substantial upland habitat use. We suggest that broad-scale landscape fragmentation is an important factor underlying anuran community structure in this region, possibly due to limitations on the accessibility of otherwise suitable habitat in fragmented urban landscapes. This study underscores the importance of a regional approach to amphibian conservation in urban and urbanizing areas; in fragmented landscapes, a network of interconnected wetland and upland habitats may be more likely to support a successful, diverse anuran community than will isolated sites.

Permafrost Thaw, Soil Moisture and Plant Community Change Alter Organic Matter Decomposition in Alaskan Tundra

NASA Astrophysics Data System (ADS)

Natali, S.; Mauritz, M.; Pegoraro, E.; Schuur, E.

2015-12-01

Climate warming in arctic tundra has been associated with increased plant productivity and a shift in plant community composition, specifically an increase in shrub cover, which can impact soil organic matter through changes in the size and composition of the leaf litter pool. Shifts in litter quantity and quality will in turn interact with changes in the soil environment as the climate continues to warm. We examined the effects of permafrost thaw, soil moisture changes, and plant community composition on leaf litter decomposition in an upland tundra ecosystem in Interior Alaska. We present warming and drying effects on decomposition rates of graminoid-dominated and shrub-dominated leaf litter mixtures over three years (2 cm depth), and annual decomposition of a common cellulose substrate (0-10 cm and 10-20 cm) over five years at a permafrost thaw and soil drying experiment. We expected that warming and drying would increase decomposition, and that decomposition would be greater in the shrub litter than in the graminoid litter mix. Decomposition of Betula nana, the dominant shrub, was 50% greater in the shrub-dominated litter mix compared to the graminoid-dominated litter. Surprisingly, there was no significant difference in total litter mass loss between graminoid and shrub litter mixtures, despite significant differences in decomposition rates of the dominant plant species when decomposed alone and in community mixtures. Drying decreased decomposition of B. nana and of the shrub community litter overall, but after two years there was no detected warming effect on shrub-community decomposition. In contrast to leaf litter decomposition, both warming and drying increased decomposition of the common substrate. Warming caused an almost twofold increase in cellulose decomposition in surface soil (0-10cm), and drying caused a twofold increase in cellulose decomposition from deeper organic layer soils (10-20cm). These results demonstrate the importance of interactions among temperature, moisture and vegetation changes on organic matter decomposition, and the potential for increased plant productivity and vegetation changes to alter the size and composition of the soil organic matter pool.

Glomus mosseae enhances root growth and Cu and Pb acquisition of upland rice (Oryza sativa L.) in contaminated soils.

PubMed

Lin, Aijun; Zhang, Xuhong; Yang, Xiaojin

2014-12-01

A pot culture experiment was carried out to investigate the roles of Glomus mosseae in Cu and Pb acquisition by upland rice (Oryza sativa L.) and the interactions between Cu and Pb. The soil was treated with three Cu levels (0, 100 and 200 mg kg(-1)) and three Pb levels (0, 300, and 600 mg kg(-1)). All treatments were designed with (+M) or without (-M) G. mosseae inoculation in a randomized block design. The addition of Cu and Pb significantly decreased root mycorrhizal colonization. Compared with -M, +M significantly increased root biomass in almost all treatments, and also significantly increased shoot biomass in the Pb(0)Cu(200), Pb(300)Cu(0), and all Pb(600) treatments. AM fungi enhanced plant Cu acquisition, but decreased plant Cu concentrations with all Cu plus Pb treatments, except for shoot in the Cu(200)Pb(600) treatment. Irrespective of Cu and Pb levels, +M plants had higher Pb uptakes than -M plants, but had lower root Pb and higher shoot Pb concentrations than those of -M plants. Another interpretation for the higher shoot Pb concentration in +M plants relied on Cu-Pb interactions. The study provided further evidences for the protective effects of AM fungi on upland rice against Cu and Pb contamination, and uncovered the phenomenon that Cu addition could promote Pb uptake and Pb partitioning to shoot. The possible mechanisms by which AM fungi can alleviate the toxicity induced by Cu and Pb are also discussed.

Auger planting of oak seedlings in northern Arkansas

Treesearch

Eric Heitzman; Adrian Grell

2003-01-01

Planting oak seedlings to regenerate upland oak forests is a promising but untested silvicultural practice in the Ozark Mountains of northern Arkansas. The stony (cherty) soils of the region make it difficult to dig deep planting holes using conventional hand planting tools. In 2001, we planted 1-0 northern red oak and white oak seedlings in 0.5 to 1 acre group...

FORAGES AND PASTURES SYMPOSIUM: Improving soil health and productivity on grasslands using managed grazing of livestock.

PubMed

Russell, J R; Bisinger, J J

2015-06-01

Beyond grazing, managed grasslands provide ecological services that may offer economic incentives for multifunctional use. Increasing biodiversity of plant communities may maximize net primary production by optimizing utilization of available light, water, and nutrient resources; enhance production stability in response to climatic stress; reduce invasion of exotic species; increase soil OM; reduce nutrient leaching or loading in surface runoff; and provide wildlife habitat. Strategically managed grazing may increase biodiversity of cool-season pastures by creating disturbance in plant communities through herbivory, treading, nutrient cycling, and plant seed dispersal. Soil OM will increase carbon and nutrient sequestration and water-holding capacity of soils and is greater in grazed pastures than nongrazed grasslands or land used for row crop or hay production. However, results of studies evaluating the effects of different grazing management systems on soil OM are limited and inconsistent. Although roots and organic residues of pasture forages create soil macropores that reduce soil compaction, grazing has increased soil bulk density or penetration resistance regardless of stocking rates or systems. But the effects of the duration of grazing and rest periods on soil compaction need further evaluation. Because vegetative cover dissipates the energy of falling raindrops and plant stems and tillers reduce the rate of surface water flow, managing grazing to maintain adequate vegetative cover will minimize the effects of treading on water infiltration in both upland and riparian locations. Through increased diversity of the plant community with alterations of habitat structure, grazing systems can be developed that enhance habitat for wildlife and insect pollinators. Although grazing management may enhance the ecological services provided by grasslands, environmental responses are controlled by variations in climate, soil, landscape position, and plant community resulting in considerable spatial and temporal variation in the responses. Furthermore, a single grazing management system may not maximize livestock productivity and each of the potential ecological services provided by grasslands. Therefore, production and ecological goals must be integrated to identify the optimal grazing management system.

Planting Loblolly Pine for Erosion Control in Northern Mississippi

Treesearch

Stanley J. Ursic

1963-01-01

Loblolly pine is widely planted for soil stabilization and the rehabilitation of denuded, actively eroding uplands of the upper Gulf Coastal Plain in north Mississippi and west Tennessee. This paper presents methods and specifications that recent research has developed for such planting. It supplements information found in Wakeley’s Planting the Southern Pines and...

76 FR 59773 - Endangered and Threatened Wildlife and Plants; Designation of Critical Habitat for Mississippi...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-27

... support a diverse ground cover of herbaceous plants, both in the uplands and in the breeding ponds (Hedman... Service 50 CFR Part 17 Endangered and Threatened Wildlife and Plants; Designation of Critical Habitat for... Wildlife and Plants; Designation of Critical Habitat for Mississippi Gopher Frog AGENCY: Fish and Wildlife...

The biologically active zone in upland habitats at the Hanford Site, Washington, USA: Focus on plant rooting depth and biomobilization.

PubMed

Lovtang, Sara; Delistraty, Damon; Rochette, Elizabeth

2018-07-01

We challenge the suggestion by Sample et al. (2015) that a depth of 305 cm (10 ft) exceeds the depth of biological activity in soils at the Hanford Site, Washington, USA, or similar sites. Instead, we support the standard point of compliance, identified in the Model Toxics Control Act in the state of Washington, which specifies a depth of 457 cm (15 ft) for the protection of both human and ecological receptors at the Hanford Site. Our position is based on additional information considered in our expanded review of the literature, the influence of a changing environment over time, plant community dynamics at the Hanford Site, and inherent uncertainty in the Sample et al. (2015) analysis. Integr Environ Assess Manag 2018;14:442-446. © 2018 SETAC. © 2018 SETAC.

Adaptive Epigenetic Differentiation between Upland and Lowland Rice Ecotypes Revealed by Methylation-Sensitive Amplified Polymorphism.

PubMed

Xia, Hui; Huang, Weixia; Xiong, Jie; Tao, Tao; Zheng, Xiaoguo; Wei, Haibin; Yue, Yunxia; Chen, Liang; Luo, Lijun

2016-01-01

The stress-induced epimutations could be inherited over generations and play important roles in plant adaption to stressful environments. Upland rice has been domesticated in water-limited environments for thousands of years and accumulated drought-induced epimutations of DNA methylation, making it epigenetically differentiated from lowland rice. To study the epigenetic differentiation between upland and lowland rice ecotypes on their drought-resistances, the epigenetic variation was investigated in 180 rice landraces under both normal and osmotic conditions via methylation-sensitive amplified polymorphism (MSAP) technique. Great alterations (52.9~54.3% of total individual-locus combinations) of DNA methylation are recorded when rice encountering the osmotic stress. Although the general level of epigenetic differentiation was very low, considerable level of ΦST (0.134~0.187) was detected on the highly divergent epiloci (HDE). The HDE detected in normal condition tended to stay at low levels in upland rice, particularly the ones de-methylated in responses to osmotic stress. Three out of four selected HDE genes differentially expressed between upland and lowland rice under normal or stressed conditions. Moreover, once a gene at HDE was up-/down-regulated in responses to the osmotic stress, its expression under the normal condition was higher/lower in upland rice. This result suggested expressions of genes at the HDE in upland rice might be more adaptive to the osmotic stress. The epigenetic divergence and its influence on the gene expression should contribute to the higher drought-resistance in upland rice as it is domesticated in the water-limited environment.

Adaptive Epigenetic Differentiation between Upland and Lowland Rice Ecotypes Revealed by Methylation-Sensitive Amplified Polymorphism

PubMed Central

Xiong, Jie; Tao, Tao; Zheng, Xiaoguo; Wei, Haibin; Yue, Yunxia; Chen, Liang; Luo, Lijun

2016-01-01

The stress-induced epimutations could be inherited over generations and play important roles in plant adaption to stressful environments. Upland rice has been domesticated in water-limited environments for thousands of years and accumulated drought-induced epimutations of DNA methylation, making it epigenetically differentiated from lowland rice. To study the epigenetic differentiation between upland and lowland rice ecotypes on their drought-resistances, the epigenetic variation was investigated in 180 rice landraces under both normal and osmotic conditions via methylation-sensitive amplified polymorphism (MSAP) technique. Great alterations (52.9~54.3% of total individual-locus combinations) of DNA methylation are recorded when rice encountering the osmotic stress. Although the general level of epigenetic differentiation was very low, considerable level of ΦST (0.134~0.187) was detected on the highly divergent epiloci (HDE). The HDE detected in normal condition tended to stay at low levels in upland rice, particularly the ones de-methylated in responses to osmotic stress. Three out of four selected HDE genes differentially expressed between upland and lowland rice under normal or stressed conditions. Moreover, once a gene at HDE was up-/down-regulated in responses to the osmotic stress, its expression under the normal condition was higher/lower in upland rice. This result suggested expressions of genes at the HDE in upland rice might be more adaptive to the osmotic stress. The epigenetic divergence and its influence on the gene expression should contribute to the higher drought-resistance in upland rice as it is domesticated in the water-limited environment. PMID:27380174

Shifts in indigenous microbial communities during the anaerobic degradation of pentachlorophenol in upland and paddy soils from southern China.

PubMed

Chen, Yating; Tao, Liang; Wu, Ke; Wang, Yongkui

2016-11-01

Pentachlorophenol (PCP) is a common persistent pesticide in soil that has generated a significant environmental problem worldwide. Therefore, anaerobic degradation of PCP by the soil indigenous microbial community has gained increasing attention. However, little information is available concerning the functional microorganisms and the potential shifts in the microbial community associated with PCP degradation. In this study, we conducted a set of experiments to determine which components of the indigenous microbial community were capable of degrading PCP in soils of two land use types (upland and paddy soils) in southern China. Our results showed that the PCP degradation rate was significantly higher in paddy soils than that in upland soils. 16S ribosomal RNA (rRNA) high-throughput sequencing revealed significant differences in microbial taxonomic composition between the soil with PCP and blank (soil without PCP) with Acinetobacter, Clostridium, Coprococcus, Oxobacter, and Sedimentibacter dominating the PCP-affected communities. Acinetobacter was also apparently enriched in the paddy soils with PCP (up to 52.2 %) indicated this genus is likely to play an important role in PCP degradation. Additionally, the Fe(III)-reducing bacteria Clostridium may also be involved in PCP degradation. Our data further revealed hitherto unknown metabolisms of potential PCP degradation by microorganisms including Coprococcus, Oxobacter, and Ruminiclostridium. Overall, these findings indicated that land use types may affect the PCP anaerobic degradation rate via the activities of indigenous bacterial populations and extend our knowledge of the bacterial populations responsible for PCP degradation.

Identification of the group IIa WRKY subfamily and the functional analysis of GhWRKY17 in upland cotton (Gossypium hirsutum L.).

PubMed

Gu, Lijiao; Li, Libei; Wei, Hengling; Wang, Hantao; Su, Junji; Guo, Yaning; Yu, Shuxun

2018-01-01

WRKY transcription factors play important roles in plant defense, stress response, leaf senescence, and plant growth and development. Previous studies have revealed the important roles of the group IIa GhWRKY genes in cotton. To comprehensively analyze the group IIa GhWRKY genes in upland cotton, we identified 15 candidate group IIa GhWRKY genes in the Gossypium hirsutum genome. The phylogenetic tree, intron-exon structure, motif prediction and Ka/Ks analyses indicated that most group IIa GhWRKY genes shared high similarity and conservation and underwent purifying selection during evolution. In addition, we detected the expression patterns of several group IIa GhWRKY genes in individual tissues as well as during leaf senescence using public RNA sequencing data and real-time quantitative PCR. To better understand the functions of group IIa GhWRKYs in cotton, GhWRKY17 (KF669857) was isolated from upland cotton, and its sequence alignment, promoter cis-acting elements and subcellular localization were characterized. Moreover, the over-expression of GhWRKY17 in Arabidopsis up-regulated the senescence-associated genes AtWRKY53, AtSAG12 and AtSAG13, enhancing the plant's susceptibility to leaf senescence. These findings lay the foundation for further analysis and study of the functions of WRKY genes in cotton.

Functional characterization of GhSOC1 and GhMADS42 homologs from upland cotton (Gossypium hirsutum L.).

PubMed

Zhang, Xiaohong; Wei, Jianghui; Fan, Shuli; Song, Meizhen; Pang, Chaoyou; Wei, Hengling; Wang, Chengshe; Yu, Shuxun

2016-01-01

In Arabidopsis flowering pathway, MADS-box genes encode transcription factors, with their structures and functions highly conserved in many species. In our study, two MADS-box genes GhSOC1 and GhMADS42 (Gossypium hirsutum L.) were cloned from upland cotton CCRI36 and transformed into Arabidopsis. GhSOC1 was additionally transformed into upland cotton. Comparative analysis demonstrated sequence conservation between GhSOC1 and GhMADS42 and genes of other plant species. Tissue-specific expression analysis of GhSOC1 and GhMADS42 revealed spatiotemporal expression patterns involving high transcript levels in leaves, shoot apical buds, and flowers. In addition, overexpression of both GhSOC1 and GhMADS42 in Arabidopsis accelerated flowering, with GhMADS42 transgenic plants showing abnormal floral organ phenotypes. Overexpression of GhSOC1 in upland cotton also produced variations in floral organs. Furthermore, chromatin immunoprecipitation assay demonstrated that GhSOC1 could regulate GhMADS41 and GhMADS42, but not FLOWERING LOCUS T, by directly binding to the genes promoter. Finally, yeast two-hybrid and bimolecular fluorescence complementation approaches were undertaken to better understand the interaction of GhSOC1 and other MADS-box factors. These experiments showed that GhSOC1 can interact with APETALA1/FRUITFULL-like proteins in cotton. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Shading effect on generative characters of upland red rice of Southeast Sulawesi, Indonesia

NASA Astrophysics Data System (ADS)

Muhidin; Syam’un, E.; Kaimuddin; Musa, Y.; Sadimantara, G. R.; Usman; Leomo, S.; Rakian, T. C.

2018-05-01

Upland red rice (Oryza sativa) contains anthocyanin, a phenolic compounds that can act as antioxidants and functional food for human dietary. The content of functional food on upland red rice is influenced by shading condition, but the production is also influenced by environmental condition, especially the availability of light. The study aims is to assess and analyze the effect of shade on the growth and production of upland red rice. The research was conducted using the quantitative method to obtain the optimal shading condition that can increase the rice anthocyanin content and relatively high production. The research was arranged in split plot design, with shade as main plot and the different of cultivar as sub plot with three replications. The shading treatment consist of 4 levels as follows: n1=shade level < 25 %, n2=shade level 25-50%, n3=shade level 50-75% and n4=shade level > 75%. The cultivar tested were (v1) = Labandiri, (v2) = Jangkobembe, (v3) = Ranggohitam, and (v4) = Paedara. The rice planted in between teak wood trees with different age and level of canopy. The research reveals that shades had an effect in decreasing plant production (the higher level of shade, the higher the decrease level of production), but the shades can improve the quality of red rice through the increase of anthocyanin content.

The influence of plant communities on postagrogenic soils in the middle taiga zone.

NASA Astrophysics Data System (ADS)

Churilin, Nikita; Churilina, Alexandra; Chizhikova, Natalia; Varlamov, Evgeny

2016-04-01

At the present time there are many abandoned postagrogenic croplands in Russia. These lands are gradually involved in natural plant succession, which has affect on the properties of the soil. Therefore, the study of these soils is one of the important trends in the Russian soil science. The aim of the study was to identify possible trends in soil changes after a long anthropogenic impact on a base of morphological, chemical and some physical properties of postagrogenic soils under different plant communities. Soils were sampled in the south of Arkhangelsk region, Ustyansky district, near Akichkin Pochinok village. Soils are formed on clay moraine of Moscow glaciation with klastolits. All soil profiles were dug on interfluve. We determined chemical composition (pH, CaCO3%, organic carbon, CEC, F2O3 (Mer-Jackson), NPK), physical characteristics (particle size distribution, bulk density of the soil) and XRD of <1μm, 1-5μm, 5-10μm fractions from soils. We selected 4 plant communities on different stages of succession: upland meadow with domination of sod grasses (Phleum pratense, Agrostis tenuis), 16 years old birch forest where dominatants are herbaceous plants such as Poa sp., Chamerion angustiflium, Agrostis tenuis, 16 years old spruce forest with no herbaceous vegetation and 70 years old bilberry spruce forest with domination of Vaccinium myrtillus and Vaccinium vitis-idaea. To study postagrogenic soils we made 4 soil profiles under these plant communities. All profiles have evidence of anthraquic horizon and they have plough pan on a depth of 20-24 cm (confirmed by bulk density). The plowed horizon is better expressed in soils under the meadow. All 4 soils are characterized by presence of Fe-Mn segregations throughout the profiles, particle size distribution heaving to the lower horizon and residual albic horizon. We identified following soils: Albic Dystric Retisol (Cutanic Abrubptic Loamic) under the old spruce, Dystric Retisol (Cutanic Loamic Anthraquic) in young spruce, Glossic Albic Dystric Retisol (Cutanic Loamic Anthraquic) in young birch forest and Dystric Retisol (Loamic Abruptic Anthraquic) under upland meadow. We found a correlation between amount of clay fraction in upper horizons (<20 cm) of these soils and crown density: the amount of clay increases with density of branches. This trend can be explained by the fact that amount of precipitation on the surface of the soil decreases with crown density, therefore clay doesn't migrate to the underlying horizons in the soil. Over time, acid aqueous solution can influence on process of clay fraction redistribution, so it explains the reduction of clay content in the old spruce forest and well-defined albic horizon. The results of chemical analyses showed that pH of these soils varies between 3 and 4. In all soils we can see illuvial accumulation of P2O5, exchangeable bases, K2O, Fe2O3. It was also shown that carbonates are present in horizons close to the subsoil, which content is less than 1%.

Long-term changes in tree composition in a mesic old-growth upland forest in southern Illinois

Treesearch

James J. Zaczek; John W. Groninger; J.W. Van Sambeek

1999-01-01

The Kaskaskia Woods (Lat. 37.5 N, Long. 88.3 W), an old-growth hardwood forest in southern Illinois, has one of the oldest and best documented set of permanent plots with individual tree measurements in the Central Hardwood Region. In 1935, eight 0.101-ha plots were installed in a 7.4 ha upland area consisting of xeric oak-hickory and mesic mixed hardwoods communities...

Genome-wide association study identified genetic variations and candidate genes for plant architecture component traits in Chinese upland cotton.

PubMed

Su, Junji; Li, Libei; Zhang, Chi; Wang, Caixiang; Gu, Lijiao; Wang, Hantao; Wei, Hengling; Liu, Qibao; Huang, Long; Yu, Shuxun

2018-06-01

Thirty significant associations between 22 SNPs and five plant architecture component traits in Chinese upland cotton were identified via GWAS. Four peak SNP loci located on chromosome D03 were simultaneously associated with more plant architecture component traits. A candidate gene, Gh_D03G0922, might be responsible for plant height in upland cotton. A compact plant architecture is increasingly required for mechanized harvesting processes in China. Therefore, cotton plant architecture is an important trait, and its components, such as plant height, fruit branch length and fruit branch angle, affect the suitability of a cultivar for mechanized harvesting. To determine the genetic basis of cotton plant architecture, a genome-wide association study (GWAS) was performed using a panel composed of 355 accessions and 93,250 single nucleotide polymorphisms (SNPs) identified using the specific-locus amplified fragment sequencing method. Thirty significant associations between 22 SNPs and five plant architecture component traits were identified via GWAS. Most importantly, four peak SNP loci located on chromosome D03 were simultaneously associated with more plant architecture component traits, and these SNPs were harbored in one linkage disequilibrium block. Furthermore, 21 candidate genes for plant architecture were predicted in a 0.95-Mb region including the four peak SNPs. One of these genes (Gh_D03G0922) was near the significant SNP D03_31584163 (8.40 kb), and its Arabidopsis homologs contain MADS-box domains that might be involved in plant growth and development. qRT-PCR showed that the expression of Gh_D03G0922 was upregulated in the apical buds and young leaves of the short and compact cotton varieties, and virus-induced gene silencing (VIGS) proved that the silenced plants exhibited increased PH. These results indicate that Gh_D03G0922 is likely the candidate gene for PH in cotton. The genetic variations and candidate genes identified in this study lay a foundation for cultivating moderately short and compact varieties in future Chinese cotton-breeding programs.

Hydrologic Regulation of Plant Rooting Depth and Vice Versa

NASA Astrophysics Data System (ADS)

Fan, Y.; Miguez-Macho, G.

2017-12-01

How deep plant roots go and why may hold the answer to several questions regarding the co-evolution of terrestrial life and its environment. In this talk we explore how plant rooting depth responds to the hydrologic plumbing system in the soil/regolith/bedrocks, and vice versa. Through analyzing 2200 root observations of >1000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients, we found strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to groundwater capillary fringe. We explore the global significance of this framework using an inverse model, and the implications to the coevolution of deep roots and the CZ in the Early-Mid Devonian when plants colonized the upland environments.

Summer Moisture Content of Some Northern Lower Michigan Understory Plants

Treesearch

Robert M. Loomis; Richard W. Blank

1981-01-01

Summer moisture contents and factors for converting fresh plant weights to ovendry weights were determined for selected herbs, ferns, and small shrubs commonly found on upland sites in northern Lower Michigan. Sampling was done weekly from mid-June through early September 1978, following the period of major plant growth. Average summer moisture contents range from...

Floristic conservation value, nested understory floras, and the development of second-growth forest.

PubMed

Spyreas, Greg; Matthews, Jeffrey W

2006-08-01

Nestedness analysis can reveal patterns of plant composition and diversity among forest patches. For nested floral assemblages, the plants occupying any one patch are a nested subset of the plants present in successively more speciose patches. Elimination of sensitive understory plants with human disturbance is one of several mechanisms hypothesized to generate nonrandom, nested floral distributions. Hypotheses explaining distributions of understory plants remain unsubstantiated across broad landscapes of varying forest types and disturbance histories. We sampled the vegetation of 51 floodplain and 55 upland forests across Illinois (USA) to examine how the diversity, composition, and nestedness of understory floras related to their overstory growth and structure (basal area), and their overall floristic conservation value (mean C). We found that plant assemblages were nested with respect to site species richness, such that rare plants indicated diverse forests. Floras were also nested with respect to site mean C and basal area (BA). However, in an opposite pattern from what we had expected, floras of high-BA stands were nested subsets of those of low-BA stands. A set of early-successional plants restricted to low-BA stands, and more importantly, the absence of a set of true forest plants in high-BA stands, accounted for this pattern. Additionally, we observed a decrease in species richness with increasing BA. These results are consistent with the hypothesis that recovery of true forest plants does not occur concurrently with overstory regeneration following massive anthropogenic disturbance. Nestedness by site mean C indicates that high conservation value (conservative) plants co-occur in highly diverse stands; these forests are assumed to be less disturbed historically. Because site mean C was uncorrelated with BA, BA-neutral disturbances such as livestock usage are suggested as accounting for between-site differences in mean C. When considered individually, conservative plants were actually more likely to be found in low-BA stands (uplands only). This suggests that floras of historically more open-canopied oak-hickory uplands are being degraded by canopy closure from increasing density of "mesophytic, nonpyrogenic" trees. It also indirectly suggests that recent moderate logging is uncorrelated with floristic conservation values.

Effects of tree shelters on planted red oaks after six growing seasons

Treesearch

Douglas O. Lantagne

1995-01-01

A 22 year-old shelterwood treatment that failed to regenerate oaks on an upland site in Michigan was clearcut in the fall of 1986 and planted with 2-0 northern red oak (Quercus rubra L.) seedlings the following spring. The four planting treatments included: control (clearcut harvest only), brush control only, 48 inch tree shelters only, and brush...

Growth of Planted Yellow-Poplar After Vertical Mulching and Fertilization on Eroded Soils

Treesearch

J.B. Baker; B.G. Blackmon

1976-01-01

Fertilization and vertical mulching improved height growth of yellow-poplars planted on eroded soils. A growing demand for hardwood timber accompanied by a diminishing land base has prompted land managers to consider planting hardwoods on marginal sites such as the eroded soils in the Silty Uplands of Arkansas, Louisiana, and Mississippi. Many of these areas were well...

Planting bottomland hardwoods

Treesearch

Karl Tennant

1989-01-01

Diverse problems confront the forest manager when planting bottomland hardwoods. Bottomland vegetation types and sites are complex and differ markedly from uplands. There are different and more numerous hardwood species that grow faster in denser stands. Sites are subject to varying intensities and duration of flooding and the action of overflow river currents that...

Bioagents and silicon promoting fast early upland rice growth.

PubMed

de Sousa, Thatyane Pereira; de Souza, Alan Carlos Alves; de Filippi, Marta Cristina Corsi; Lanna, Anna Cristina; Cortês, Marcio Vinicius; Pinheiro, Hugo Alves; da Silva, Gisele Barata

2018-02-01

Upland rice can overcome major challenges through the insertion of silicate fertilization and the presence of plant growth-promoting microorganisms (PGPMs) during its cultivation, as these factors promote an increase in vigor and plant disease resistance. Two consecutive experiments were conducted to evaluate the beneficial effects of silicon fertilization combined with the PGPM, Pseudomonas fluorensces, Burkholderia pyrrocinia, and a pool of Trichoderma asperellum, in upland rice seedlings, cultivar BRS Primavera CL: (a) E1, selecting PGPM type and Si doses for rice growth promotion and leaf blast supression, and (b) E2, evaluating physiological characteristics correlated with mechanisms involved in the higher vegetative growth in highlighted treatments from E1. In E1, 2 Si t ha -1 combined with the application of T. asperellum pool or PGPM mixture increased 54% in root dry matter biomass and 35 and 65% in shoot and root lengths, respectively; it also suppressed 99% of rice blast severity. In E2, shoot and root dry matter biomass and length, photosynthetic rate, water use efficiency, total soluble sugar, and chloroplastidic pigments were superior in BRS Primavera CL seedlings treated with 2 Si t ha -1 and T. asperellum pool or PGPM mixture. Higher salicilic and jasmonic acid levels were found in seedlings treated with Si and T. asperellum pool, individually. These physiological characteristics may explain, in part, the higher vigor of upland rice seedlings promoted by the synergistic effect between silicate fertilization and beneficial microorganisms.

[Effects of different multiple cropping systems on paddy field weed community under long term paddy-upland rotation].

PubMed

Yang, Bin-Juan; Huang, Guo-Qin; Xu, Ning; Wang, Shu-Bin

2013-09-01

Based on a long term field experiment, this paper studied the effects of different multiple cropping systems on the weed community composition and species diversity under paddy-upland rotation. The multiple cropping rotation systems could significantly decrease weed density and inhibited weed growth. Among the rotation systems, the milk vetch-early rice-late maize --> milk vetchearly maize intercropped with early soybean-late rice (CCSR) had the lowest weed species dominance, which inhibited the dominant weeds and decreased their damage. Under different multiple cropping systems, the main weed community was all composed of Monochoia vaginalis, Echinochloa crusgalli, and Sagittaria pygmae, and the similarity of weed community was higher, with the highest similarity appeared in milk vetch-early rice-late maize intercropped with late soybean --> milk vetch-early maize-late rice (CSCR) and in CCSR. In sum, the multiple cropping rotations in paddy field could inhibit weeds to a certain extent, but attentions should be paid to the damage of some less important weeds.

Exploring the potential of the permanganate oxidation method as a tool to monitor soil quality in agricultural upland systems of Southeast Asia

NASA Astrophysics Data System (ADS)

Hepp, Catherine M.; Bruun, Thilde Bech; de Neergaard, Andreas

2014-05-01

The transition to more intensified upland systems is having an impact on the soil quality, defined as the ability of a soil to both provide and maintain essential services to an ecosystem. As many tropical upland soils are inherently low in quality, it is essential that impacts be monitored. Soil quality is assessed by using a combination of parameters that serve as indicators and cover the soil chemical, biological and physical properties. An ideal indicator should be sensitive to changes in the environment and management practices and should be widely accessible, meaning low resource requirement (i.e. time and equipment). Total organic carbon (TOC) content is a commonly used indicator of soil quality as it is linked to many soil functions and processes; however analysis is costly and requires access to advanced instrumental facilities, rendering it unsuited for many developing countries. An alternative indicator is the soil fraction dominated by easily decomposable carbon; this may be measured by treating soil samples with 0.2M potassium permanganate (KMnO4), an oxidizing agent which is thought to mimic the enzymes released by the soil microbial community. The advantage of this method is that it is accessible: it is fast, requires little resource input and is field appropriate. There is no consensus however as to which soil carbon fraction the method targets. Furthermore Skjemstad et al. (2006) has indicated that KMnO4 may oxidise charcoal, a component of the non-labile carbon pool; this has implications for the suitability of the method when used for soils of shifting cultivation systems. The purpose of this study was to investigate the potential of permanganate oxidizable carbon (Pox C) as a reliable indicator of soil quality in agricultural upland systems in Northern Lao PDR. Focus was placed on the relations between Pox C and other soil quality parameters (bulk density, pH, CEC, TOC, total N, exchangeable K, plant available P) and upland rice yields. The ability of KMnO4 to oxidize charcoal was also a focus however, as the study is still in its initial stage, no results can be discussed. Volumetric soil samples (at the surface and at 10 cm) and upland rice yield measurements were taken from three fields with three plots that were previously left fallow for five years (n=9; soil n=81). Pearson's Correlation test and Stepwise Regression analysis was done using SPSS v 16.0 for Windows. Results show that Pox C is significantly correlated to the measured soil parameters in a manner similar to TOC. Both are positively correlated to the soil nutrients: Total N %, P Avail and K Exch; Pox C however had a stronger correlation to K Exch than TOC. This affirms the important role of Pox C in soil processes in the biological, chemical and physical spheres. Furthermore, the regression analysis identified Pox C as an influencing factor for the variations seen in upland rice yields. It is concluded that Pox C is a suitable indicator for soil quality and may be useful in monitoring changes in the soil quality of agricultural upland systems.

[Community structure and seasonal change of soil micro-arthropodes in the Lower Reaches of Liaohe River Plain under different land utilization].

PubMed

Ke, Xin; Liang, Wenju; Yu, Wantai; Xie, Rongdong; Weng, Chaolian; Yang, Yiming; Yin, Wenying

2004-04-01

The data on the soil micro-arthropodes under four land utilization types (fallow, forest, upland field and paddy) in the Lower Reaches of Liaohe River Plain were collected in a period from October 2000 to October 2001. Using the community parameters of population density, group richness, diversity index and evenness, the community structure and its seasonal changes were described. There were 12 groups of soil micro-arthropodes in this region, and of the groups, Collembola and Acarina were dominant, and Diptera, Coleoptera and Hymenoptera were often seen in fallow, forest and upland field, while Collembola, Acarina and Diptera were dominant in paddy. Both land utilization and seasonal change influenced the population density, group richness and diversity index of soil micro-arthropodes. The vertical distribution in both density and group number of arthropods in soil was in the order of surface > middle > bottom.

Characterization of contamination, source and degradation of petroleum between upland and paddy fields based on geochemical characteristics and phospholipid fatty acids.

PubMed

Zhang, Juan; Wang, Renqing; Du, Xiaoming; Li, Fasheng; Dai, Jiulan

2012-01-01

To evaluate contamination caused by petroleum, surface soil samples were collected from both upland and paddy fields along the irrigation canals in the Hunpu wastewater irrigation region in northeast China. N-alkanes, terpanes, steranes, and phospholipid fatty acids (PLFA) in the surface soil samples were analyzed. The aliphatic hydrocarbon concentration was highest in the samples obtained from the upland field near an operational oil well; it was lowest at I-3P where wastewater irrigation promoted the downward movement of hydrocarbons. The Hunpu region was found contaminated by heavy petroleum from oxic lacustrine fresh water or marine deltaic source rocks. Geochemical parameters also indicated significantly heavier contamination and degradation in the upland fields compared with the paddy fields. Principal component analysis based on PLFA showed various microbial communities between petroleum contaminated upland and paddy fields. Gram-negative bacteria indicated by 15:0, 3OH 12:0, and 16:1(9) were significantly higher in the paddy fields, whereas Gram-positive bacteria indicated by i16:0 and 18:1(9)c were significantly higher in the upland fields (p < 0.05). These PLFAs were related to petroleum contamination. Poly-unsaturated PLFA (18:2omega6, 9; indicative of hydrocarbon-degrading bacteria and fungi) was also significantly elevated in the upland fields. This paper recommends more sensitive indicators of contamination and degradation of petroleum in soil. The results also provide guidelines on soil pollution control and remediation in the Hunpu region and other similar regions.

The United South and Eastern Tribe (USET) Proper ...

EPA Pesticide Factsheets

The maintenance of wildlife and aquatic habitat is dependent on the development of a riparian area management strategy, which considers and adapts to certain basic ecological and economic relationships. These relationships are functions of riparian and terrestrial ecosystems, growth and reproduction of woody and herbaceous plant communities, hydrologic and geomorphic conditions and processes, soils, sediment, water quality and quantity, recovery rates, upland conditions, cultural, recreation and domestic uses. The class participants determined functional ratings, using the Proper Functioning Condition protocol for each field site visited. The methods used in this Workshop were found to work equally well in both eastern and western ecosystems in the United States. One of the many goals of a Tribe’s environmental and natural resource department is to maintain and restore functionality of stream and wetland riparian and upland areas, which could protect Tribal beneficial uses and values for those water bodies. Disturbances occurring within a watershed, or adjacent to a stream corridor, typically cause effects that may temporarily or permanently alter environmental and ecological risk factors. Focusing on where and how water moves and vegetation/soil trends in the riparian system can often determine if important Tribal goals and objectives are being met. It can then be determined what management changes are needed to move the environmental and ecosystem risk facto

Fossil palm beetles refine upland winter temperatures in the Early Eocene Climatic Optimum

PubMed Central

Archibald, S. Bruce; Morse, Geoffrey E.; Greenwood, David R.; Mathewes, Rolf W.

2014-01-01

Eocene climate and associated biotic patterns provide an analog system to understand their modern interactions. The relationship between mean annual temperatures and winter temperatures—temperature seasonality—may be an important factor in this dynamic. Fossils of frost-intolerant palms imply low Eocene temperature seasonality into high latitudes, constraining average winter temperatures there to >8 °C. However, their presence in a paleocommunity may be obscured by taphonomic and identification factors for macrofossils and pollen. We circumvented these problems by establishing the presence of obligate palm-feeding beetles (Chrysomelidae: Pachymerina) at three localities (a fourth, tentatively) in microthermal to lower mesothermal Early Eocene upland communities in Washington and British Columbia. This provides support for warmer winter Eocene climates extending northward into cooler Canadian uplands. PMID:24821798

Fossil palm beetles refine upland winter temperatures in the Early Eocene Climatic Optimum.

PubMed

Archibald, S Bruce; Morse, Geoffrey E; Greenwood, David R; Mathewes, Rolf W

2014-06-03

Eocene climate and associated biotic patterns provide an analog system to understand their modern interactions. The relationship between mean annual temperatures and winter temperatures-temperature seasonality-may be an important factor in this dynamic. Fossils of frost-intolerant palms imply low Eocene temperature seasonality into high latitudes, constraining average winter temperatures there to >8 °C. However, their presence in a paleocommunity may be obscured by taphonomic and identification factors for macrofossils and pollen. We circumvented these problems by establishing the presence of obligate palm-feeding beetles (Chrysomelidae: Pachymerina) at three localities (a fourth, tentatively) in microthermal to lower mesothermal Early Eocene upland communities in Washington and British Columbia. This provides support for warmer winter Eocene climates extending northward into cooler Canadian uplands.

Differentiating climatic and successional influences on long-term development of a marsh

USGS Publications Warehouse

Singer, Darren K.; Jackson, Stephen T.; Madsen, Barbara J.; Wilcox, Douglas A.

1996-01-01

Comparison of long—term records of local wetland vegetation dynamics with regional, climate—forced terrestrial vegetation changes can be used to differentiate the rates and effects of autogenic successional processes and allogenic environmental change on wetland vegetation dynamics. We studied Holocene plant macrofossil and pollen sequences from Portage Marsh, a shallow, 18—ha marsh in northeastern Indiana. Between 10 000 and 5700 yr BP the basin was occupied by a shallow, open lake, while upland vegetation consisted of mesic forests of Pinus, Quercus, Ulmus, and Carya. At 5700 yr BP the open lake was replaced rapidly by a shallow marsh, while simultaneously Quercus savanna developed on the surrounding uplands. The marsh was characterized by periodic drawdowns, and the uplands by periodic fires. Species composition of the marsh underwent further changes between 3000 and 2000 yr BP. Upland pollen spectra at Portage Marsh and other sites in the region shifted towards more mesic vegetation during that period. The consistency and temporal correspondence between the changes in upland vegetation and marsh vegetation indicate that the major vegetational changes in the marsh during the Holocene resulted from hydrologic changes forced by regional climate change. Progressive shallowing of the basin by autogenic accumulation of organic sediment constrained vegetational responses to climate change but did not serve as the direct mechanism of change.

Temperate Forest Methane Sink Diminished by Tree Emissions

NASA Astrophysics Data System (ADS)

Megonigal, P.; Pitz, S.

2015-12-01

Global budgets ascribe 4-10% of atmospheric CH4 sinks to upland soils and assume that soils are the sole surface for CH4 exchange between upland forests and the atmosphere. The prevailing dogma that upland forests are sinks of atmospheric CH4 was challenged a decade ago by large discrepancies in bottom-up versus top-down models of CH4 concentrations over upland forests that are still unexplained. Evidence of a novel abiotic mechanism for CH4 production from plant tissue is too small to explain the discrepancy. Alternative hypotheses for this observation have been proposed, but not tested. Here we demonstrate that CH4 is emitted from the stems of dominant tree species in an upland forest. Tree emissions occur throughout the growing season while soils adjacent to the trees are consuming CH4, challenging the concept that forests are uniform sinks of CH4. Scaling by stem surface area showed the forest to be a net CH4 source during a wet sample in June and a reduced CH4 sink by 5% annually. High frequency measurements revealed diurnal cycling in the rate of CH4 emissions, pointing to soils as the CH4 source and transpiration as the most likely pathway for CH4 transport. We propose the forests are smaller CH4 sinks than previously estimated due to stem emissions. Stem emissions may be particularly important in upland tropical forests characterized by high rainfall and transpiration, resolving differences between models and measurements.

Factors affecting broadleaf woody vegetation in upland pine forests managed for longleaf pine restoration

Treesearch

Robert N. Addington; Benjamin O. Knapp; Geoffrey G. Sorrell; Michele L. Elmore; G. Geoff Wang; Joan L. Walker

2015-01-01

Controlling broadleaf woody plant abundance is one of the greatest challenges in longleaf pine (Pinus palustris Mill.) ecosystem restoration. Numerous factors have been associated with broadleaf woody plant abundance in longleaf pine ecosystems, including site quality, stand structure, and fire frequency and intensity, yet the way in which these...

The importance of floodplain forests in the conservation and management of neotropical migratory birds in the Midwest

USGS Publications Warehouse

Knutson, M.G.; Hoover, J.P.; Klaas, E.E.; Thompson, Frank R.

1996-01-01

Bottomland forests of the Central Forest Region of the Upper Midwest are found primarily on the floodplains of large rivers and include at least six types of forest communities. Birds breeding in bottomland forests are affected by extensive variation in latitude, climate, hydrology, forest succession, and change caused by anthropogenic disturbances. The floodplain forest bird community differs in species composition and in relative abundance from adjacent upland habitats. High abundances of some species are found in the floodplain and some species, such as the prothonotary warbler, brown creeper, yellow-billed cuckoo, yellow-bellied sapsucker, and great crested flycatcher, show a clear preference for floodplain forests. Studies of nesting success indicate that, for some species, nest success may be higher in the floodplain than in the uplands. Floodplain birds face threats due to large-scale loss of floodplain forest habitat. Conservation efforts should focus on restoring degraded floodplains by maintaining high tree species diversity and wide corridors. To accomplish this, the underlying hydrodynamics which support a diverse floodplain forest habitat may need to be restored. Large, contiguous tracts of floodplain and upland forests should be maintained where they exist and restored in other locations. This will provide some high quality habitat for area-sensitive neotropical migratory birds (NTMBs) in agricultural landscapes where small, scattered forest fragments are the rule. Future research efforts should examine the importance of floodplain forests in maintaining populations of neotropical migrants, especially birds experiencing population declines in adjacent uplands.

9 CFR 146.3 - Participation.

Code of Federal Regulations, 2013 CFR

2013-01-01

... turkey slaughter plant, including its affiliated flocks, may participate in the Plan when the producer or... commercial upland game bird, commercial waterfowl, meat-type chicken and/or meat-type turkey flocks that are...

9 CFR 146.3 - Participation.

Code of Federal Regulations, 2012 CFR

2012-01-01

... turkey slaughter plant, including its affiliated flocks, may participate in the Plan when the producer or... commercial upland game bird, commercial waterfowl, meat-type chicken and/or meat-type turkey flocks that are...

9 CFR 146.3 - Participation.

Code of Federal Regulations, 2014 CFR

2014-01-01

... turkey slaughter plant, including its affiliated flocks, may participate in the Plan when the producer or... commercial upland game bird, commercial waterfowl, meat-type chicken and/or meat-type turkey flocks that are...

The interrelationship of households economics activities of upland rice farmers in rain-fed farming in Ponjong Sub-district, Gunungkidul District, Indonesia

NASA Astrophysics Data System (ADS)

Rini, W. D. E.; Harisudin, M.; Supriyadi; Rahayu, E. S.

2018-03-01

Gunungkidul is one of the regencies at Yogyakarta, Indonesia which is 90% occupied by dry land, and thus vulnerable to climate change impact. Since dryland relies on water only from rain to meet crop water requirement, part of land management is rainfed. This condition encourages farmers to make the right decision regarding their additional income to meet household needs. Under the limited land resources, farmers decided to plant upland rice once or twice a year. The aim of the study is to analyze the interrelationship of households economics activities of upland rice farmers in rain-fed farming based on production, labor allocation, and consumption. The research method is descriptive analysis, with research site Ponjong sub-district, determined by the purposive method. Sampling method using proportional random sampling. Economics model was determined by using simultaneous equation model, with 2 SLS estimation method. The results showed that the household economics model of upland rice farmers in the rainfed land can be explained by using farmers household model and there is a linkage between production, labor allocation, and consumption.

Structure and resilience of fungal communities in Alaskan boreal forest soils

Treesearch

D. Lee Taylor; Ian C. Herriott; Kelsie E. Stone; Jack W. McFarland; Michael G. Booth; Mary Beth Leigh

2010-01-01

This paper outlines molecular analyses of soil fungi within the Bonanza Creek Long Term Ecological Research program. We examined community structure in three studies in mixed upland, black spruce (Picea mariana (Mill.) BSP), and white spruce (Picea glauca (Moench) Voss) forests and examined taxa involved in cellulose...

Diversity and distribution of ant communities in Puerto Rico

Treesearch

J.A. Torres

1984-01-01

I studied ants in upland tropical forest, grassland and agricultural land in San Lorenzo, Puerto Rico, to uncover factors responsible for the distribution and number of species in these communities. Observations, laboratory studies and field experiments were used. Microclimate influenced the distributions of Pheidole fallax, Solenopsis geminata and Monomorium ebeninum...

Estimating agro-ecosystem carbon balance of northern Japan, and comparing the change in carbon stock by soil inventory and net biome productivity.

PubMed

Li, Xi; Toma, Yo; Yeluripati, Jagadeesh; Iwasaki, Shinya; Bellingrath-Kimura, Sonoko D; Jones, Edward O; Hatano, Ryusuke

2016-06-01

Soil C sequestration in croplands is deemed to be one of the most promising greenhouse gas mitigation options for agriculture. We have used crop-level yields, modeled heterotrophic respiration (Rh) and land use data to estimate spatio-temporal changes in regional scale net primary productivity (NPP), plant C inputs, and net biome productivity (NBP) in northern Japan's arable croplands and grasslands for the period of 1959-2011. We compared the changes in C stocks derived from estimated NBP and using repeated inventory datasets for each individual land use type from 2005 to 2011. For the entire study region of 2193 ha, overall annual plant C inputs to the soil constituted 37% of total region NPP. Plant C inputs in upland areas (excluding bush/fallow) could be predicted by climate variables. Overall NBP for all land use types increased from -1.26MgCha(-1)yr(-1) in 1959-0.26 Mg Cha(-1)yr(-1) in 2011. However, upland and paddy fields showed a decreased in NBP over the period of 1959-2011, under the current C input scenario. From 1988, an increase in agricultural abandonment (bush/fallow) and grassland cover caused a slow increase in the regional C pools. The comparison of carbon budgets using the NBP estimation method and the soil inventory method indicated no significant difference between the two methods. Our results showed C loss in upland crops, paddy fields and sites that underwent land use change from paddy field to upland sites. We also show C gain in grassland from 2005 to 2011. An underestimation of NBP or an overestimation of repeated C inventories cannot be excluded, but either method may be suitable for tracking absolute changes in soil C, considering the uncertainty associated with these methods. Copyright © 2016 Elsevier B.V. All rights reserved.

Modeling tidal marsh distribution with sea-level rise: evaluating the role of vegetation, sediment, and upland habitat in marsh resiliency.

PubMed

Schile, Lisa M; Callaway, John C; Morris, James T; Stralberg, Diana; Parker, V Thomas; Kelly, Maggi

2014-01-01

Tidal marshes maintain elevation relative to sea level through accumulation of mineral and organic matter, yet this dynamic accumulation feedback mechanism has not been modeled widely in the context of accelerated sea-level rise. Uncertainties exist about tidal marsh resiliency to accelerated sea-level rise, reduced sediment supply, reduced plant productivity under increased inundation, and limited upland habitat for marsh migration. We examined marsh resiliency under these uncertainties using the Marsh Equilibrium Model, a mechanistic, elevation-based soil cohort model, using a rich data set of plant productivity and physical properties from sites across the estuarine salinity gradient. Four tidal marshes were chosen along this gradient: two islands and two with adjacent uplands. Varying century sea-level rise (52, 100, 165, 180 cm) and suspended sediment concentrations (100%, 50%, and 25% of current concentrations), we simulated marsh accretion across vegetated elevations for 100 years, applying the results to high spatial resolution digital elevation models to quantify potential changes in marsh distributions. At low rates of sea-level rise and mid-high sediment concentrations, all marshes maintained vegetated elevations indicative of mid/high marsh habitat. With century sea-level rise at 100 and 165 cm, marshes shifted to low marsh elevations; mid/high marsh elevations were found only in former uplands. At the highest century sea-level rise and lowest sediment concentrations, the island marshes became dominated by mudflat elevations. Under the same sediment concentrations, low salinity brackish marshes containing highly productive vegetation had slower elevation loss compared to more saline sites with lower productivity. A similar trend was documented when comparing against a marsh accretion model that did not model vegetation feedbacks. Elevation predictions using the Marsh Equilibrium Model highlight the importance of including vegetation responses to sea-level rise. These results also emphasize the importance of adjacent uplands for long-term marsh survival and incorporating such areas in conservation planning efforts.

[Distribution characteristics of soil profile nitrous oxide concentration in paddy fields with different rice-upland crop rotation systems].

PubMed

Liu, Ping-li; Zhang, Xiao-lin; Xiong, Zheng-qin; Huang, Tai-qing; Ding, Min; Wang, Jin-yang

2011-09-01

To investigate the dynamic distribution patterns of nitrous oxide (N2O) in the soil profiles in paddy fields with different rice-upland crop rotation systems, a special soil gas collection device was adopted to monitor the dynamics of N2O at the soil depths 7, 15, 30, and 50 cm in the paddy fields under both flooding and drainage conditions. Two rotation systems were installed, i.e., wheat-single rice and oilseed rape-double rice, each with or without nitrogen (N) application. Comparing with the control, N application promoted the N2O production in the soil profiles significantly (P < 0.01), and there existed significant correlations in the N2O concentration among the four soil depths during the whole observation period (P < 0.01). In the growth seasons of winter wheat and oilseed rape under drainage condition and with or without N application, the N2O concentrations at the soil depths 30 cm and 50 cm were significantly higher than those at the soil depths 7 cm and 15 cm; whereas in the early rice growth season under flooding condition and without N application, the N2O concentrations at the soil depth 7 cm and 15 cm were significantly higher than those at the soil depths 30 cm and 50 cm (P < 0.05). No significant differences were observed in the N2O concentrations at the test soil depths among the other rice cropping treatments. The soil N2O concentrations in the treatments without N application peaked in the transitional period from the upland crops cropping to rice planting, while those in the treatments with N application peaked right after the second topdressing N of upland crops. Relatively high soil N2O concentrations were observed at the transitional period from the upland crops cropping to rice planting.

Responses of upland herpetofauna to the restoration of Carolina Bays and thinning of forested Bay Margins.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ledvina, Joseph A.

2008-05-01

Research on the effects of wetland restoration on reptiles and amphibians is becoming more common, but almost all of these studies have observed the colonization of recently disturbed habitats that were completely dry at the time of restoration. In a similar manner, investigations herpetofaunal responses to forest management have focused on clearcuts, and less intensive stand manipulations are not as well studied. To evaluate community and population responses of reptiles and amphibians to hydrology restoration and canopy removal in the interior of previously degraded Carolina bays, I monitored herpetofauna in the uplands adjacent to six historically degraded Carolina bays atmore » the Savannah River Site (SRS) in South Carolina for four years after restoration. To evaluate the effects of forest thinning on upland herpetofauna, forests were thinned in the margins of three of these bays. I used repeated measures ANOVA to compare species richness and diversity and the abundance of selected species and guilds between these bays and with those at three reference bays that were not historically drained and three control bays that remained degraded. I also used Non-metric Multidimensional Scaling (NMDS) to look for community-level patterns based treatments.« less

Summer moisture contents of understory vegetation in northeastern Minnesota.

Treesearch

Robert M. Loomis; Peter J. Roussopoulos; Richard W. Blank

1979-01-01

Summer moisture contents and factors for converting fresh plant weights to ovendry biomass estimates are presented for some herbs, mosses, and small shrubs found in the upland forest stand of northeastern Minnesota.

Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.)

USDA-ARS?s Scientific Manuscript database

Cotton is a world’s leading crop important to the world’s textile and energy industries, and a model species for studies of plant polyploidization, cellulose biosynthesis and cell wall biogenesis. Here, we report the construction and extensive analysis of a binary bacterial artificial chromosome (BI...

Modifications to a LATE MERISTEM IDENTITY-1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.)

USDA-ARS?s Scientific Manuscript database

Leaf shape varies spectacularly among plants. Leaves are the primary source of photo-assimilate in crop plants and understanding the genetic basis of variation in leaf morphology is critical to improving agricultural productivity. Leaf shape played a unique role in cotton improvement, as breeders ha...

Arbuscule mycorrhizae: A linkage between erosion and plant processes in a southwest grassland

Treesearch

Mary O' Dea; D. Phillip Guertin; C. P. P. Reid

2000-01-01

Plant and soil processes within a natural ecosystem interact with surface hydrology through their influence on surface roughness, soil structure, and evaporation, and through their relation with soil biota. In the Southwest, decreases in perennial grass cover and erosion on uplands and stream channels can initiate a decline in watershed condition. Agronomic literature...

Effects of Climate Change and Organic Matter Amendments on the Fate of Soil Carbon and the Global Warming Potential of CO2, CH4, and N2O Emissions in an Upland Soil

NASA Astrophysics Data System (ADS)

Simmonds, M.; Muehe, E. M.; Fendorf, S. E.

2017-12-01

Our current understanding of the mechanisms driving carbon stabilization in soil organic matter (SOM) and its release to the atmosphere is insufficient for predicting the response of soil carbon dynamics to future climatic conditions. The persistence of SOM has been studied primarily within the context of biochemical, physical, and geochemical protection from decomposition. More recently, bioenergetic constraints on SOM decomposition due to oxygen limitations have been demonstrated in submerged soils. However, the relevance of anaerobic domains in upland soils is uncertain. To better understand how upland soils will respond to climate change, we conducted a 52-day incubation of an upland soil at constant soil moisture (field capacity) under varying air temperatures (32°C and 37°C), CO2 concentrations (398 and 850 ppmv), and soil organic carbon contents (1.3%, 2.4%). Overall, we observed a stimulatory effect of future climate (elevated temperature and CO2) and higher carbon inputs on net SOM mineralization rates (higher CO2, CH4 and N2O emissions). Importantly, CH4 emissions were observed in the soils with added plant residue, indicating anaerobic microsites are relevant in upland soils, and significantly impact microbial respiration pathways, rates of SOM mineralization, and the global warming potential of trace gas emissions. These findings have important implications for positive soil carbon-climate feedbacks, and warrant further investigation into representing anaerobic soil domains of upland soils in biogeochemical models.

A discrimlnant function approach to ecological site classification in northern New England

Treesearch

James M. Fincher; Marie-Louise Smith

1994-01-01

Describes one approach to ecologically based classification of upland forest community types of the White and Green Mountain physiographic regions. The classification approach is based on an intensive statistical analysis of the relationship between the communities and soil-site factors. Discriminant functions useful in distinguishing between types based on soil-site...

77 FR 65398 - Tehachapi Uplands Multiple Species Habitat Conservation Plan; Kern County, CA; Final...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-26

... wildlife by significantly impairing essential behavioral patterns, including breeding, feeding, and... be authorized by an incidental take permit, plant species may be included on a permit in recognition...

Litter and nutrient flows in tropical upland forest flooded by a hydropower plant in the Amazonian basin.

PubMed

Pereira, Guilherme Henrique A; Jordão, Henos Carlos K; Silva, Vanessa Francieli V; Pereira, Marcos Gervasio

2016-12-01

Extensive areas in the Brazilian Amazon have been flooded for the construction of hydroelectric dams. However, the water regime of these areas affects the dynamics of igarapés (streams) in adjacent terra firme (upland forests). When the reservoirs are filled, the water levels of streams rise above the normal levels and upland bank forests are flooded. We investigated how this flooding affects the litterfall and nutrient input in the upland forests upstream of a hydroelectric dam reservoir in the Central Amazonia. When the reservoir was filled, the forests were flooded and produced more than twice the litter (8.80Mg·ha -1 yr -1 ), with three times more leaves (6.36Mg·ha -1 yr -1 ) than when they were not flooded (4.20 and 1.92Mg·ha -1 yr -1 , respectively). During flooding, the decomposition rate was four times lower in flooded forests (0.328g·g -1 yr -1 ) than in control forests (1.460g·g -1 yr -1 ). Despite this, the flooding did not favor litter or nutrient accumulation. Therefore, dam construction changes the organic matter and nutrient cycling in upland Amazon rainforests. This may influence the important role that they play in organic matter dynamics and could have consequences for the regional carbon balance and, ultimately, global climate. Copyright © 2016 Elsevier B.V. All rights reserved.

Spatial differences in hydrologic characteristics and water chemistry of a temperate coastal plain peatland: The Great Dismal Swamp, USA

USGS Publications Warehouse

Speiran, Gary K.; Wurster, Frederick C.

2016-01-01

Spatial differences in hydrologic processes and geochemistry across forested peatlands control the response of the wetland-community species and resiliency to natural and anthropogenic disturbances. Knowing these controls is essential to effectively managing peatlands as resilient wetland habitats. The Great Dismal Swamp is a 45,325 hectare peatland in the Atlantic Coastal Plain of Virginia and North Carolina, USA, managed by the U.S. Fish and Wildlife Service. The existing forest-species distribution is a product of timber harvesting, hydrologic alteration by canal and road construction, and wildfires. Since 2009, studies of hydrologic and geochemical controls have expanded knowledge of groundwater flow paths, water chemistry, response to precipitation events, and characteristics of the peat. Dominant hydrologic and geochemical controls include (1) the gradual slope in land surface, (2) vertical differences in the hydraulic characteristics of the peat, (3) the proximity of lateral groundwater and small stream inflows from uplands, (4) the presence of an extensive canal and road network, and (5) small, adjustable-height dams on the canals. Although upland sources provide some surface water and lateral groundwater inflow to western parts of the swamp, direct groundwater recharge by precipitation is the major source of water throughout the swamp and the only source in many areas. Additionally, the proximity and type of upland water sources affect water levels and nutrient concentrations in canal water and groundwater. Where streams are a dominant upland source, variations in groundwater levels and nutrient concentrations are greater than where recharge by precipitation is the primary water source. Where upland groundwater is a dominant source, water levels are more stable. Because the species distribution of forest communities in the Swamp is strongly influenced by these controls, swamp managers are beginning to incorporate this knowledge into forest, water, and fire management plans.

Altitude effect on leaf wax carbon isotopic composition in humid tropical forests

NASA Astrophysics Data System (ADS)

Wu, Mong Sin; Feakins, Sarah J.; Martin, Roberta E.; Shenkin, Alexander; Bentley, Lisa Patrick; Blonder, Benjamin; Salinas, Norma; Asner, Gregory P.; Malhi, Yadvinder

2017-06-01

The carbon isotopic composition of plant leaf wax biomarkers is commonly used to reconstruct paleoenvironmental conditions. Adding to the limited calibration information available for modern tropical forests, we analyzed plant leaf and leaf wax carbon isotopic compositions in forest canopy trees across a highly biodiverse, 3.3 km elevation gradient on the eastern flank of the Andes Mountains. We sampled the dominant tree species and assessed their relative abundance in each tree community. In total, 405 sunlit canopy leaves were sampled across 129 species and nine forest plots along the elevation profile for bulk leaf and leaf wax n-alkane (C27-C33) concentration and carbon isotopic analyses (δ13C); a subset (76 individuals, 29 species, five forest plots) were additionally analyzed for n-alkanoic acid (C22-C32) concentrations and δ13C. δ13C values display trends of +0.87 ± 0.16‰ km-1 (95% CI, r2 = 0.96, p < 0.01) for bulk leaves and +1.45 ± 0.33‰ km-1 (95% CI, r2 = 0.94, p < 0.01) for C29n-alkane, the dominant chain length. These carbon isotopic gradients are defined in multi-species sample sets and corroborated in a widespread genus and several families, suggesting the biochemical response to environment is robust to taxonomic turnover. We calculate fractionations and compare to adiabatic gradients, environmental variables, leaf wax n-alkane concentrations, and sun/shade position to assess factors influencing foliar chemical response. For the 4 km forested elevation range of the Andes, 4-6‰ higher δ13C values are expected for upland versus lowland C3 plant bulk leaves and their n-alkyl lipids, and we expect this pattern to be a systematic feature of very wet tropical montane environments. This elevation dependency of δ13C values should inform interpretations of sedimentary archives, as 13C-enriched values may derive from C4 grasses, petrogenic inputs or upland C3 plants. Finally, we outline the potential for leaf wax carbon isotopes to trace biomarker sourcing within catchments and for paleoaltimetry.

Effects of elk herbivory on vegetation and nitrogen processes

USGS Publications Warehouse

Schoenecker, Kathryn A.; Singer, Francis J.; Zeigenfuss, Linda C.; Binkley, Dan; Menezes, Romulo S.C.

2004-01-01

We used 35-year and 4-year ungulate exclosures to determine the effects of elk (Cervus elaphus) herbivory on above-ground and below-ground production and soil fertility on the elk winter range in Rocky Mountain National Park (RMNP), Colorado, USA. We used paired grazed and ungrazed plots to evaluate ungulate herbivory effects in short and tall willow (Salix spp.), aspen (Populus spp.), and upland grass/shrub vegetation associations. We measured nitrogen (N) fluxes (litter deposition, fecal and urinary deposition from elk, movements of N by elk, N mineralization, soil N availability, elk consumption rates) within the elk winter, above-ground and below-ground N pools (herbaceous, shrub and root biomass, %N in plants, roots, and soil), and N fluxes on and off the elk winter range (seasonal movement of N by elk). Nitrogen mineralization and soil nitrate (NO3) pools were reduced in the short willow community (P = 0.07 and 0.10, respectively; n = 4 sites) in grazed plots, but not in the upland grass/shrub community or tall willow sites (P >0.10). Annual growth of willows was reduced by 98% in grazed plots, relative to 35-year exclosures, and 66% relative to 4-year exclosures. Thus, height, canopy size, and litter biomass of willows were reduced, and N yield of willows was 64% less in grazed plots. We evaluated movement of N by elk among 6 major vegetation associations and found that elk grazed more and bedded less in willow vegetation association compared to mixed conifer, mesic meadow, and grassland/shrub associations (P = 0.014, 0.001, and 0.026, respectively), suggesting that elk herbivory and movement led to a net loss of N in the willow vegetation association. Elk spent less total time in willows than mesic meadow association, yet they consumed large amounts of willow plant biomass. We recommend management of elk numbers and elk herbivory that takes into consideration impacts to N process function, as negative effects from current levels of herbivory were observed in ≥1 of 3 vegetation associations studied.

Fate of 14C-labeled dissolved organic matter in paddy and upland soils in responding to moisture.

PubMed

Chen, Xiangbi; Wang, Aihua; Li, Yang; Hu, Lening; Zheng, Hua; He, Xunyang; Ge, Tida; Wu, Jinshui; Kuzyakov, Yakov; Su, Yirong

2014-08-01

Soil organic matter (SOM) content in paddy soils is higher than that in upland soils in tropical and subtropical China. The dissolved organic matter (DOM) concentration, however, is lower in paddy soils. We hypothesize that soil moisture strongly controls the fate of DOM, and thereby leads to differences between the two agricultural soils under contrasting management regimens. A 100-day incubation experiment was conducted to trace the fate and biodegradability of DOM in paddy and upland soils under three moisture levels: 45%, 75%, and 105% of the water holding capacity (WHC). (14)C labeled DOM, extracted from the (14)C labeled rice plant material, was incubated in paddy and upland soils, and the mineralization to (14)CO2 and incorporation into microbial biomass were analyzed. Labile and refractory components of the initial (14)C labeled DOM and their respective half-lives were calculated by a double exponential model. During incubation, the mineralization of the initial (14)C labeled DOM in the paddy soils was more affected by moisture than in the upland soils. The amount of (14)C incorporated into the microbial biomass (2.4-11.0% of the initial DOM-(14)C activity) was less affected by moisture in the paddy soils than in the upland soils. At any of the moisture levels, 1) the mineralization of DOM to (14)CO2 within 100 days was 1.2-2.1-fold higher in the paddy soils (41.9-60.0% of the initial DOM-(14)C activity) than in the upland soils (28.7-35.7%), 2) (14)C activity remaining in solution was significantly lower in the paddy soils than in the upland soils, and 3) (14)C activity remaining in the same agricultural soil solution was not significantly different among the three moisture levels after 20 days. Therefore, moisture strongly controls DOM fate, but moisture was not the key factor in determining the lower DOM in the paddy soils than in the upland soils. The UV absorbance of DOM at 280 nm indicates less aromaticity of DOM from the paddy soils than from the upland soils. At any of the moisture levels, much more labile DOM was found in paddy soils (34.3-49.2% of the initial (14)C labeled DOM) compared with that in upland soils (19.4-23.9%). This demonstrates that the lower DOM content in the paddy soil compared with that in the upland soil is probably determined by the less complex components and structure of the DOM. Copyright © 2014 Elsevier B.V. All rights reserved.

The lost micro-deserts of the Patuxent River using landscape history, insect and plant specimens, and field work to detect and define a unique community

USGS Publications Warehouse

Droege, S.; Davis, C.A.; Steiner, W.E.; =Mawdsley, J.

2009-01-01

Historical and recent records of both plants and insects are synthesized for uplands along the eastern edge of Maryland?s Patuxent River from the edge of the Piedmont south to Jug Bay. This strip is characterized by deep sandy soils found in the Evesboro and Galestown sandy loams soil series. Within this narrow strip there exists a unique flora and fauna adapted to open dry sandy soils and occurring in small remnant patches associated with old sand mining operations and scattered protected areas. We illustrate the uniqueness of these sites using four groups, vascular plants, tenebrionid beetles (Coleoptera: Tenebrionidae), tiger beetles (Coleoptera: Cicindelidae), and bees (Hymenoptera: Apoidea: Anthophila). Within each of these groups, rare species were detected whose populations were locally restricted to this soil type and whose nearest known populations were often hundreds of kilometers away. In addition to documenting the direct conservation importance of these small sandy openings along the Patuxent, we contrast the lack of any indication from vertebrate inventories that this region is unique. The combination of plant and insect inventories appears to be a better means of clarifying a site?s importance than does any survey of a single taxonomic group.

Oil Palm and Rubber Tree Water Use Patterns: Effects of Topography and Flooding

PubMed Central

Hardanto, Afik; Röll, Alexander; Niu, Furong; Meijide, Ana; Hendrayanto; Hölscher, Dirk

2017-01-01

Oil palm and rubber plantations extend over large areas and encompass heterogeneous site conditions. In periods of high rainfall, plants in valleys and at riparian sites are more prone to flooding than plants at elevated topographic positions. We asked to what extent topographic position and flooding affect oil palm and rubber tree water use patterns and thereby influence spatial and temporal heterogeneity of transpiration. In an undulating terrain in the lowlands of Jambi, Indonesia, plantations of the two species were studied in plot pairs consisting of upland and adjacent valley plots. All upland plots were non-flooded, whereas the corresponding valley plots included non-flooded, long-term flooded, and short-term flooded conditions. Within each plot pair, sap flux densities in palms or trees were monitored simultaneously with thermal dissipation probes. In plot pairs with non-flooded valleys, sap flux densities of oil palms were only slightly different between the topographic positions, whereas sap flux densities of rubber trees were higher in the valley than at the according upland site. In pairs with long-term flooded valleys, sap flux densities in valleys were lower than at upland plots for both species, but the reduction was far less pronounced in oil palms than in rubber trees (-22 and -45% in maximum sap flux density, respectively). At these long-term flooded valley plots palm and tree water use also responded less sensitively to fluctuations in micrometeorological variables than at upland plots. In short-term flooded valley plots, sap flux densities of oil palm were hardly affected by flooding, but sap flux densities of rubber trees were reduced considerably. Topographic position and flooding thus affected water use patterns in both oil palms and rubber trees, but the changes in rubber trees were much more pronounced: compared to non-flooded upland sites, the different flooding conditions at valley sites amplified the observed heterogeneity of plot mean water use by a factor of 2.4 in oil palm and by a factor of 4.2 in rubber plantations. Such strong differences between species as well as the pronounced heterogeneity of water use across space and time may be of relevance for eco-hydrological assessments of tropical plantation landscapes. PMID:28421091

76 FR 58953 - Endangered and Threatened Wildlife and Plants; Determination of Endangered Status for Casey's...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-22

... impacted by small projects (for example, single home lots and pipeline development). Hovore (2003, p. 4... limited to upland terrace habitat. For example, entire sections of Palm Canyon [[Page 58958

RNA-Seq Transcriptome Profiling of Upland Cotton (Gossypium hirsutum L.) Root Tissue under Water-Deficit Stress

PubMed Central

Bowman, Megan J.; Park, Wonkeun; Bauer, Philip J.; Udall, Joshua A.; Page, Justin T.; Raney, Joshua; Scheffler, Brian E.; Jones, Don. C.; Campbell, B. Todd

2013-01-01

An RNA-Seq experiment was performed using field grown well-watered and naturally rain fed cotton plants to identify differentially expressed transcripts under water-deficit stress. Our work constitutes the first application of the newly published diploid D5 Gossypium raimondii sequence in the study of tetraploid AD1 upland cotton RNA-seq transcriptome analysis. A total of 1,530 transcripts were differentially expressed between well-watered and water-deficit stressed root tissues, in patterns that confirm the accuracy of this technique for future studies in cotton genomics. Additionally, putative sequence based genome localization of differentially expressed transcripts detected A2 genome specific gene expression under water-deficit stress. These data will facilitate efforts to understand the complex responses governing transcriptomic regulatory mechanisms and to identify candidate genes that may benefit applied plant breeding programs. PMID:24324815

Nut production in response to thinning and fertilization for planted walnut

Treesearch

Felix Ponder; Steve Rutledge; J.W. Van Sambeek

2013-01-01

Nut production from nursery-run black walnuts grown on 225 acres at the Hammons Products Company's Sho-Neff Black Walnut Farm in Stockton, MO, was evaluated from 1995 to 2010 to determine if nut production increased after thinning and fertilization in 2001. The farm consists of 11 upland and 10 bottomland plantings on sites ranging from unsuitable to well suited...

Establishing northern red oak on a degraded upland site in northeastern Pennsylvania: Influence of seedling pedigree and quality

Treesearch

Cornelia C. Pinchot; Thomas J. Hall; Scott E. Schlarbaum; Arnold M. Saxton; James Bailey

2017-01-01

Enrichment plantings using large oak seedlings of regional sources may promote superior survival and growth compared to direct seeding or standard nursery seedling material. This study evaluated the survival and growth of planted 1-0 northern red oak (Quercus rubra L.) seedlings among 11 families and 3 seedling size classes (small, average, and...

Patterns and processes: Monitoring and understanding plant diversity in frequently burned longleaf pine (Pinus palustris) landscapes

Treesearch

J. O' Brien; L. Dyer; R. Mitchell; A. Hudak

2013-01-01

Longleaf pine (Pinus palustris) ecosystems are remarkably rich in plant species and represent the dominant upland forest type in several southeastern military installations. Management of these forests on installations is critical both to fulfill the military mission and to conserve this unique natural resource. The researchers will couple a series of field experiments...

The effects of prescribed fire and ungulate herbivory and 7 years postburn in the upland bitterbrush (Purshia tridentata) communities of Rocky Mountain National Park, Colorado

Treesearch

Kelly Nesvacil; Charles E. Olmsted

2008-01-01

A controlled, manipulative study utilizing exclosures was initiated in 1994 by Zeigenfuss and others (2002) to assess the effects of prescribed fire and ungulate herbivory in the bitterbrush communities of Rocky Mountain National Park (RMNP). Four sites were chosen randomly from all available bitterbrush communities in RMNP wherein exclosures were erected (March/May...

Regional signatures of plant response to drought and elevated temperature across a desert ecosystem

USGS Publications Warehouse

Munson, Seth M.; Muldavin, Esteban H.; Belnap, Jayne; Peters, Debra P.C.; Anderson, John P.; Reiser, M. Hildegard; Gallo, Kirsten; Melgoza-Castillo, Alicia; Herrick, Jeffrey E.; Christiansen, Tim A.

2013-01-01

The performance of many desert plant species in North America may decline with the warmer and drier conditions predicted by climate change models, thereby accelerating land degradation and reducing ecosystem productivity. We paired repeat measurements of plant canopy cover with climate at multiple sites across the Chihuahuan Desert over the last century to determine which plant species and functional types may be the most sensitive to climate change. We found that the dominant perennial grass, Bouteloua eriopoda, and species richness had nonlinear responses to summer precipitation, decreasing more in dry summers than increasing with wet summers. Dominant shrub species responded differently to the seasonality of precipitation and drought, but winter precipitation best explained changes in the cover of woody vegetation in upland grasslands and may contribute to woody-plant encroachment that is widespread throughout the southwestern United States and northern Mexico. Temperature explained additional variability of changes in cover of dominant and subdominant plant species. Using a novel empirically based approach we identified ‘‘climate pivot points’’ that were indicative of shifts from increasing to decreasing plant cover over a range of climatic conditions. Reductions in cover of annual and several perennial plant species, in addition to declines in species richness below the long-term summer precipitation mean across plant communities, indicate a decrease in the productivity for all but the most drought-tolerant perennial grasses and shrubs in the Chihuahuan Desert. Overall, our regional synthesis of long-term data provides a robust foundation for forecasting future shifts in the composition and structure of plant assemblages in the largest North American warm desert.

Annual and seasonal variation and the effects of hydroperiod on benthic macroinvertebrates of seasonal forest (

Treesearch

Robert T. Brooks

2000-01-01

Seasonal forest ponds (SFPs) are isolated, ephemeral lentic habitats in upland forest ecosystems. These ponds occur commonly throughout temperate forests. Faunal communities of these ponds are dominated by invertebrates. Composition of these communities varies temporally both between years and also seasonally within a single hydrologic year, composition is most...

Application of ecological, geological and oceanographic ERTS-1 imagery to Delaware's coastal resources planning

NASA Technical Reports Server (NTRS)

Klemas, V. (Principal Investigator); Bartlett, D. S.

1973-01-01

The author has identified the following significant results. Coastal vegetation species appearing in the ERTS-1 images taken of Delaware Bay have been correlated with ground truth vegetation maps and imagery obtained from high altitude overflights. Multispectral analysis of the high altitude photographs indicated that four major vegetation communities could be clearly discriminated from 60,000 feet altitude including: (1) salt marsh cord grass; (2) salt marsh hay and spike grass; (3) reed grass; and (4) high tide bush and sea myrtle. In addition, human impact can be detected in the form of fresh water impoundments built to attract water fowl, dredge-fill operations and other alterations of the coastal environment. Overlay maps matching the USGS topographic map size of 1:24,000 have been prepared showing the four wetland vegetation communities, fresh water impoundments, and alteration of wetlands by mosquito control ditching and dredge-fill operations. Using these maps, ERTS-1 images were examined by human interpreters and automated multispectral analyzers. Major plant communities of (1) Spartina alterniflora, (2) Spartina patens and Distichlis spicata, and (3) Iva frutescens and Baccharis halimifolia can be distinguished from each other and from surrounding uplands in ERTS-1 scanner bands 6 and 7.

Contrasting effects of plant species traits and moisture on the decomposition of multiple litter fractions.

PubMed

Riggs, Charlotte E; Hobbie, Sarah E; Cavender-Bares, Jeannine; Savage, Jessica A; Wei, Xiaojing

2015-10-01

Environmental variation in moisture directly influences plant litter decomposition through effects on microbial activity, and indirectly via plant species traits. Whether the effects of moisture and plant species traits are mutually reinforcing or counteracting during decomposition are unknown. To disentangle the effects of moisture from the effects of species traits that vary with moisture, we decomposed leaf litter from 12 plant species in the willow family (Salicaceae) with different native habitat moisture preferences in paired mesic and wetland plots. We fit litter mass loss data to an exponential decomposition model and estimated the decay rate of the rapidly cycling litter fraction and size of the remaining fraction that decays at a rate approaching zero. Litter traits that covaried with moisture in the species' native habitat significantly influenced the decomposition rate of the rapidly cycling litter fraction, but moisture in the decomposition environment did not. In contrast, for the slowly cycling litter fraction, litter traits that did not covary with moisture in the species' native habitat and moisture in the decomposition environment were significant. Overall, the effects of moisture and plant species traits on litter decomposition were somewhat reinforcing along a hydrologic gradient that spanned mesic upland to wetland (but not permanently surface-saturated) plots. In this system, plant trait and moisture effects may lead to greater in situ decomposition rates of wetland species compared to upland species; however, plant traits that do not covary with moisture will also influence decomposition of the slowest cycling litter fraction.

Invertebrates Associated with Coarse Woody Debris in Streams, Upland Forests, and Wetlands: A Review

Treesearch

A. Braccia; D.P. Batzer

1999-01-01

We reviewed literature on the inbvertebrate groups associated with coarse woody debris in forests, streams, and wetlands, and contrasted patterns of invertebrate community development and wood decomposition among ecosystems.

Identifying Differences in Abiotic Stress Gene Networks between Lowland and Upland Ecotypes of Switchgrass (DE-SC0008338)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Childs, Kevin; Buell, Robin; Zhao, Bingyu

Switchgrass (Panicum virgatum) is a warm-season C4 grass that is a target lignocellulosic biofuel species for use in the United States due to its local adaption capabilities and high biomass accumulation. Two ecotypes of switchgrass have been described. Members of the lowland ecotype are taller, have narrower leaf blades and generate more biomass compared to individuals from the upland ecotype. Additionally, lowland plants are generally found in the southern United States while upland switchgrass is more typically present in the northern United States. These differences are important as it is envisioned that switchgrass for biofuel production will typically be grownmore » on marginal lands in the northern United States to supplement and diversify farmers' traditional crop incomes. While lowland switchgrass is more productive, it has poor winter survivability in northern latitudes where upland switchgrass is expected to be grown for biofuel use. Abiotic stresses likely to be encountered by switchgrass include drought and salinity. Despite initially being described as preferring wetter environments, members of the lowland ecotype have been characterized as being more drought tolerant than plants of the upland ecotype. Nonetheless, direct trials have indicated that variation for drought tolerance exists in both ecotypes, but prior to this project, only a relatively small number of switchgrass lines had been tested for drought responses. Similarly, switchgrass cultivars have not been widely tested for salt tolerance, but a few studies have shown that even mild salt stress can inhibit growth. The effects of drought and salt stress on plant growth are complex. Both drought and salinity affect the osmotic potential of plant cells and negatively affect plant growth due to reduced water potential and reduced photosynthesis that results from lower stomatal conductance of CO 2. Plants respond to drought and salt stress by activating genes that directly attempt to reduce the stress (e.g., transmembrane pumps that partition Na +) and mitigate the effects of the stress (e.g., synthesis of osmoprotectant metabolites and stress-related signaling compounds). Prior to the start of this project, no gene expression analysis had been performed on switchgrass under conditions of drought or salt stress, and therefore, relevant gene networks responding to drought and salt stress were unknown in switchgrass. In this project, we performed drought, salt and alkali-salt screens on 49 switchgrass cultivars (Liu et al 2014; Liu et al 2015; Hu et al 2015; Kim et al 2016). These experiments demonstrated that a wide range of variation exists within switchgrass for drought, salt and alkali-salt tolerance and that, while the lowland ecotype of switchgrass is often considered more tolerant of abiotic stresses, there are some upland switchgrass lines that are also very tolerant of drought, salt and alkali-salt stress. We also conducted drought and salt time course experiments with Alamo and Dacotah. We have identified modules of coexpressed genes that differentiate Alamo and Dacotah drought responses. We are continuing to analyze these results and plan to submit manuscripts describing this work in early 2017. In an effort to show how drought- and salt-related gene modules could be dissected, we generated transgenic switchgrass overexpressing either PvGTγ-1 or ZmDREB2. Increased expression of PvGTγ-1 does confer increased salt tolerance, and we were able to identify genes that are induced and suppressed by PvGTγ-1. Overexpression of ZmDREB2 increases drought tolerance in switchgrass. Analysis of the PvGTγ-1 and ZmDREB2 overexpression work is ongoing, and we plan to prepare manuscripts about these experiments for submission in early 2017.« less

1997 Monitoring report for the Gunnison, Colorado Wetlands Mitigation Plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1997-11-01

Under the Uranium Mill Tailings Remedial Action (UMTRA) Project, the U.S. Department of Energy (DOE) cleaned up uranium mill tailings and other surface contamination near the town of Gunnison, Colorado. Remedial action resulted in the elimination of 4.3 acres (ac) (1.7 hectares [ha]) of wetlands. This loss is mitigated by the enhancement of six spring-fed areas on Bureau of Land Management (BLM) land (mitigation sites). Approximately 254 ac (1 03.3 ha) were fenced at the six sites to exclude grazing livestock. Of the 254 ac (103.3 ha), 17.8 ac (7.2 ha) are riparian plant communities; the rest are sagebrush communities.more » Baseline grazed conditions of the riparian plant communities at the mitigation sites were measured prior to fencing. This report discusses results of the fourth year of a monitoring program implemented to document the response of vegetation and wildlife to the exclusion of livestock. Three criteria for determining success of the mitigation were established: plant height, vegetation density (bare ground), and vegetation diversity. By 1996, Prospector Spring, Upper Long`s Gulch, and Camp Kettle met the criteria. The DOE requested transfer of these sites to BLM for long-term oversight. The 1997 evaluation of the three remaining sites, discussed in this report, showed two sites (Houston Gulch and Lower Long`s Gulch) meet the criteria. The DOE will request the transfer of these two sites to the BLM for long-term oversight. The last remaining site, Sage Hen Spring, has met only two of the criteria (percent bare ground and plant height). The third criterion, vegetation diversity, was not met. The vegetation appears to be changing from predominantly wet species to drier upland species, although the reason for this change is uncertain. It may be due to below-normal precipitation in recent years, diversion of water from the spring to the stock tank, or manipulation of the hydrology farther up gradient.« less

Introduction of black walnut and northern red oak seedlings in an upland hardwood forest in southeastern Ohio

Treesearch

Donald E. Hilt

1977-01-01

Black walnut and northern red oak seedlings were planted on a clearcut area in 1964. Three cultural treatments were applied to seedlings to control competing trees. Average height and survival were analyzed 13 growing seasons after planting. Results indicated that black walnut seedlings can be effectively established on good sites if cultural treatments are applied....

Foraging and nesting habitat of breeding male northern goshawks in the laurentian mixed forest province, Minnesota

USGS Publications Warehouse

Boal, C.W.; Andersen, D.E.; Kennedy, P.L.

2005-01-01

We used radiotelemetry to examine foraging habitat preferences of 17 breeding, male northern goshawks (Accipiter gentilis) in Minnesota from 1998-2000. We assessed habitat preference using radio relocation points and 50-m radius buffers of radio relocation points. Our data suggested that foraging male goshawks used early-successional upland conifer stands (???25 yrs old), early-successional upland deciduous stands (???50 yrs old), late-successional upland conifer stands (???50 yrs old), and late-successional upland deciduous stands (???50 yrs old) more frequently than expected based on the abundance of these vegetation types in the landscape. The 2 most available stand types, early-successional upland deciduous (<25 yrs old) and all ages of late-successional lowland conifer stands, were used less than expected by foraging goshawks. Late-successional lowland deciduous stands (???50 yrs old) were used in proportion to availability. Although analysis of relocation points suggested early-successional upland deciduous stands (25-49 yrs old) and late-successional upland conifer stands (???50 yrs old) were used in proportion to availability, analysis of buffers around relocation points indicated that these stand types were also used more than expected by foraging goshawks. Regardless of vegetation community type, stands used by goshawks were structurally similar with high canopy and understory stem densities, high canopy closure, substantial shrub cover, and large amounts of woody debris. Nest stands consisted of taller and larger diameter canopy trees and fewer understory trees than foraging stands, but stands were otherwise similar in structural features, suggesting goshawks used similar stands for nesting and foraging but that they tended to select the most mature stands for nesting. A commonality among nesting and foraging stands was the presence of open spaces between the canopy and understory foliage, and between understory and shrub layer foliage. In our study area, these spaces may have served as relatively unobstructed flight paths where foraging and nesting stands possessed stem densities at the upper end of that reported for goshawk habitat.

Old-growth definition for western juniper woodlands: Texas ashe juniper dominated or codominated communities. Forest Service general technical report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diamond, D.D.

1997-09-01

Ashe juniper dominated or codominated woodlands are extensive within the Edwards Plateu in Texas. Almost all contemporary woodlands are the result of various disturbances, especially grazing and fire suppression. Old-growth examples are rare. Several different geomorphic situations once supported natural Ashe juniper communities with different dynamics and composition. These included mesic slopes and canyon systems, shallow-soiled uplands (hardscrabble), and deeper-soiled uplants. The most extensive and most diverse woodlands were in canyon systems, where Ashe juniper shared dominance with a diversity of oaks and other broad-leaved trees, Drier upland woodlands were less diverse, with live oak, shin oak, and Vasey oakmore » variously important. Ashe junipr woodlands harbor a diverse biota, including rare and endemic species, and, thus, preservation of representative old-growth examples is an important conservation concern.« less

Catastrophic flood and forest cover change in the Huong river basin, central Viet Nam: a gap between common perceptions and facts.

PubMed

Tran, Phong; Marincioni, Fausto; Shaw, Rajib

2010-11-01

Recent catastrophic floods in Viet Nam have been increasingly linked to land use and forest cover change in the uplands. Despite the doubts that many scientists have expressed on such nexus, this common view prompted both positive forest protection/reforestation programs and often-unwarranted blame on upland communities for their forest management practices. This study discusses the disparity between public perceptions and scientific evidences relating the causes of catastrophic floods. The former was drawn on the results of a questionnaire and focus groups discussions with key informants of different mountainous communities, whereas the latter was based on GIS and remote sensing analysis of land cover change, including a statistical analysis of hydro-meteorological data of the Huong river basin in Viet Nam. Results indicate that there is a gap between the common beliefs and the actual relationship between the forest cover change and catastrophic floods. Undeniably, the studied areas showed significant changes in land cover over the period 1989-2008, yet, 71% of the variance of catastrophic flood level in the downstream areas appeared related to variance in rainfall. Evidences from this study showed that the overall increasing trends of catastrophic flooding in the Huong river basin was mainly due to climate variability and to the development of main roads and dyke infrastructures in the lowlands. Forest management policies and programs, shaped on the common assumption that forest degradation in the upland is the main cause of catastrophic flood in the downstream areas, should be reassessed to avoid unnecessary strain on upland people. Copyright 2010 Elsevier Ltd. All rights reserved.

Associations of breeding birds with fire-influenced and riparian-upland gradients in a longleaf pine ecosystem

USGS Publications Warehouse

Allen, J.C.; Krieger, S.M.; Walters, J.R.; Collazo, J.A.

2006-01-01

We determined the effects of fire history and a riparian-upland gradient on the breeding bird community at Fort Bragg Military Installation in North Carolina, one of the largest remnant areas of the endangered longleaf pine (Pinus palustris) ecosystem. Study sites were classified into two treatments: fire-intense (areas experiencing growing-season burns) and fire-suppressed (areas lacking fires). Within each treatment, bird and vegetation data were recorded at point-count stations positioned at three distances from streamhead pocosins to characterize the riparian-upland habitat gradient: 0, 75, and ≥150 m. Total bird abundance and species richness varied significantly along the riparian-upland gradient, with pocosins contributing greatly to avian biodiversity. Our data revealed strong effects of fire history and riparian-upland gradient on bird species, which we described in terms of breeding-bird assemblages. Members of the open longleaf assemblage (e.g., Red- cockaded Woodpecker [Picoides borealis], Bachman's Sparrow [Aimophila aestivalis]) were most common in fire-intense areas and at upland locations. Members of the fire-suppressed assemblage (e.g., Wood Thrush [Hylocichla mustelina], Ovenbird [Seiurus aurocapilla]) were confined to pocosins in fire-intense areas, but became more abundant in fire-suppressed areas. Members of the pocosin assemblage (e.g., Eastern Towhee [Pipilo erythropthalamus], Common Yellowthroat [Geothlypis trichas]) were largely confined to pocosins and, in some cases, were most abundant in fire-intense pocosins. Fire suppression increased structural diversity of vegetation and promoted one breeding-bird assemblage (fire-suppressed), but at the expense of two others (open longleaf, pocosin). Continued management of Fort Bragg to promote longleaf pine restoration is essential for supporting conservation of the open-longleaf bird assemblage; in addition, it will benefit the pocosin assemblage.

Model estimation of land-use effects on water levels of northern Prairie wetlands

USGS Publications Warehouse

Voldseth, R.A.; Johnson, W.C.; Gilmanov, T.; Guntenspergen, G.R.; Millett, B.V.

2007-01-01

Wetlands of the Prairie Pothole Region exist in a matrix of grassland dominated by intensive pastoral and cultivation agriculture. Recent conservation management has emphasized the conversion of cultivated farmland and degraded pastures to intact grassland to improve upland nesting habitat. The consequences of changes in land-use cover that alter watershed processes have not been evaluated relative to their effect on the water budgets and vegetation dynamics of associated wetlands. We simulated the effect of upland agricultural practices on the water budget and vegetation of a semipermanent prairie wetland by modifying a previously published mathematical model (WETSIM). Watershed cover/land-use practices were categorized as unmanaged grassland (native grass, smooth brome), managed grassland (moderately heavily grazed, prescribed burned), cultivated crops (row crop, small grain), and alfalfa hayland. Model simulations showed that differing rates of evapotranspiration and runoff associated with different upland plant-cover categories in the surrounding catchment produced differences in wetland water budgets and linked ecological dynamics. Wetland water levels were highest and vegetation the most dynamic under the managed-grassland simulations, while water levels were the lowest and vegetation the least dynamic under the unmanaged-grassland simulations. The modeling results suggest that unmanaged grassland, often planted for waterfowl nesting, may produce the least favorable wetland conditions for birds, especially in drier regions of the Prairie Pothole Region. These results stand as hypotheses that urgently need to be verified with empirical data.

The Mating System of the Wild-to-Domesticated Complex of Gossypium hirsutum L. Is Mixed

PubMed Central

Velázquez-López, Rebeca; Wegier, Ana; Alavez, Valeria; Pérez-López, Javier; Vázquez-Barrios, Valeria; Arroyo-Lambaer, Denise; Ponce-Mendoza, Alejandro; Kunin, William E.

2018-01-01

The domestication syndrome of many plants includes changes in their mating systems. The evolution of the latter is shaped by ecological and genetic factors that are particular to an area. Thus, the reproductive biology of wild relatives must be studied in their natural distribution to understand the mating system of a crop species as a whole. Gossypium hirsutum (upland cotton) includes both domesticated varieties and wild populations of the same species. Most studies on mating systems describe cultivated cotton as self-pollinated, while studies on pollen dispersal report outcrossing; however, the mating system of upland cotton has not been described as mixed and little is known about its wild relatives. In this study we selected two wild metapopulations for comparison with domesticated plants and one metapopulation with evidence of recent gene flow between wild relatives and the crop to evaluate the mating system of cotton’s wild-to-domesticated complex. Using classic reproductive biology methods, our data demonstrate that upland cotton presents a mixed mating system throughout the complex. Given cotton’s capacity for outcrossing, differences caused by the domestication process in cultivated individuals can have consequences for its wild relatives. This characterization of the diversity of the wild relatives in their natural distribution, as well as their interactions with the crop, will be useful to design and implement adequate strategies for conservation and biosecurity. PMID:29868048

Identification of the group IIa WRKY subfamily and the functional analysis of GhWRKY17 in upland cotton (Gossypium hirsutum L.)

PubMed Central

Gu, Lijiao; Li, Libei; Wei, Hengling; Wang, Hantao; Su, Junji; Guo, Yaning

2018-01-01

WRKY transcription factors play important roles in plant defense, stress response, leaf senescence, and plant growth and development. Previous studies have revealed the important roles of the group IIa GhWRKY genes in cotton. To comprehensively analyze the group IIa GhWRKY genes in upland cotton, we identified 15 candidate group IIa GhWRKY genes in the Gossypium hirsutum genome. The phylogenetic tree, intron-exon structure, motif prediction and Ka/Ks analyses indicated that most group IIa GhWRKY genes shared high similarity and conservation and underwent purifying selection during evolution. In addition, we detected the expression patterns of several group IIa GhWRKY genes in individual tissues as well as during leaf senescence using public RNA sequencing data and real-time quantitative PCR. To better understand the functions of group IIa GhWRKYs in cotton, GhWRKY17 (KF669857) was isolated from upland cotton, and its sequence alignment, promoter cis-acting elements and subcellular localization were characterized. Moreover, the over-expression of GhWRKY17 in Arabidopsis up-regulated the senescence-associated genes AtWRKY53, AtSAG12 and AtSAG13, enhancing the plant’s susceptibility to leaf senescence. These findings lay the foundation for further analysis and study of the functions of WRKY genes in cotton. PMID:29370286

Uptake of stormwater nitrogen in bioretention systems demonstrated from 15N tracer techniques

NASA Astrophysics Data System (ADS)

Houdeshel, D.; Hultine, K. R.; Pomeroy, C. A.

2012-12-01

Bioretention stormwater management systems are engineered ecosystems that capture urban stormwater in order to reduce the harmful effects of stormwater pollution on receiving waters. Bioretention systems have been shown to be effective at reducing the volume of runoff, and thereby reduce the nutrient loading to receiving waters from urban areas. However, little work has been done to evaluate the treatment processes that are responsible for reductions in effluent nitrogen (N). We hypothesize that the pulses of inorganic nitrogen associated with urban runoff events are captured in the plat tissues within these systems and not adsorbed to the soil media, thus creating a long-term, sustainable treatment approach to reducing the total nutrient loading to receiving waters. Nitrogen treatment performance was tested on two bioretention systems in Salt Lake City, UT: 1) an upland native community that does not require irrigation in semi-arid climates, and 2) a wetland community that requires 250 l of daily irrigation to offset the relatively high evaporative demand in the region. Each cell is sized to treat a 2.5 cm storm from a 140 m2 impervious surface: the area of the bioretention system is 10 m2. To test the N removal performance of each system, runoff events were simulated to represent an average precipitation regime using a synthetic stormwater blend starting in January, 2012. Effluent was collected from an underdrain and analyzed for total nitrogen (TN); mass removal was calculated for each month by subtracting the TN mass added to the garden minus the TN mass that flowed out of the garden. To test the hypothesis that plants assimilate stormwater N, 4 g of 100 atom% 15N NH4NO3 tracer was used as the N source in the synthetic stormwater during the first 2,000 l synthetic storm event in May. This isotopic label was calculated to enrich the total N pool of each garden to 100‰ 15N/14Nair. New growth was harvested from each plant in both cells and analyzed for 15N before the isotopic label was introduced and weekly thereafter. In May 2012, the upland garden captured 6.2 grams of TN from the added stormwater (55% of TN added), and the wetland garden captured 7.1 grams of TN from the added stormwater (67% of TN added). Within two weeks of adding the label, the 15N ratio increased 500‰ to 3,000‰ in all plant tissues tested in both systems. The results of the isotopic labeling experiment support the hypothesis that the plants used in both vegetated bioretention systems directly contribute to stormwater N treatment through N assimilation.

Biogeochemical Processes in Steppe Landscapes of the Ergeni Upland in the Holocene

NASA Astrophysics Data System (ADS)

Kalinin, P. I.; Kudrevatykh, I. Yu.; Vagapov, I. M.; Borisov, A. V.; Alekseev, A. O.

2018-05-01

A soil catena was studied on the Ergeni Upland; the soils and plants were sampled in five dependent points. The contents of macro- and microelements in them were determined. It was found that the radial (vertical) geochemical migration predominates in the eluvial positions of the catena, and the lateral geochemical migration predominates in the transeluvial and transeluvial-accumulative positions. Plants of the Poa L. genus intensely accumulated elements within the eluvial part of the catena, whereas plants of the Artemisia genus were element accumulators within the trans-superaquatic position. Plants of the Artemisia genus were generally characterized by a higher coefficient of the biological uptake of elements in all parts of the catena, except for the eluvial position, where this parameter was higher for plants from the Poa L genus. A rise in the magnetic susceptibility of the soil profile relative to the parent material was the highest in the eluvial position and the lowest in the trans-superaquatic position. A comparative analysis of geochemical ratios for modern soils showed that they are determined by the topographic position of the given point. However, the gradient of variations for surface soils is much smaller in comparison with that for buried soils indicative of the climatic fluctuations. The obtained geochemical indicators can be used for comparative analysis of buried soils found not only on the divides but also in the subordinate landscape positions.

Effects of visual grading on northern red oak (Quercus rubra L.) seedlings planted in two shelterwood stands on the Cumberland Plateau of Tennessee, USA

Treesearch

Stacy Clark; Scott Schlarbaum; Callie Schweitzer

2015-01-01

Artificial regeneration of oak has been generally unsuccessful in maintaining the oak component in productive upland forests of eastern North America. We tested visual grading effects on quality-grown northern red oak (Quercus rubra) seedlings planted in two submesic stands on the Cumberland Plateau escarpment of Tennessee, USA. Seedlings were grown for one year using...

Upland Hardwood Forests and Related Communities of the Arkansas Ozarks in the Early 19th Century

Treesearch

Thomas L. Foti

2004-01-01

Historic accounts of the 19 th Century Arkansas Ozarks mention such communities as oak forests, pine forests, barrens and prairies. I document the region-wide distribution of these types based on data from the first land survey conducted by the General Land Office (GLO). Structural classes used here include closed forest, open forest, woodland, savanna, open savanna...

Bat activity following restoration prescribed burning in the central Appalachian Upland and riparian habitats

USGS Publications Warehouse

Austin, Lauren V.; Silvis, Alexander; Ford, W. Mark; Muthersbaugh, Michael; Powers, Karen E.

2018-01-01

After decades of fire suppression in eastern North America, land managers now are prioritizing prescribed fire as a management tool to restore or maintain fire-adapted vegetation communities. However, in long—fire-suppressed landscapes, such as the central and southern Appalachians, it is unknown how bats will respond to prescribed fire in both riparian and upland forest habitats. To address these concerns, we conducted zero-crossing acoustic surveys of bat activity in burned, unburned, riparian, and non-riparian areas in the central Appalachians, Virginia, USA. Burn and riparian variables had model support (ΔAICc < 4) to explain activity of all bat species. Nonetheless, parameter estimates for these conditions were small and confidence intervals overlapped zero for all species, indicating effect sizes were marginal. Our results suggest that bats respond to fire differently between upland and riparian forest habitats, but overall, large landscape-level prescribed fire has a slightly positive to neutral impact on all bats species identified at our study site post—fire application.

[Spatiotemporal evolvement of soil microbiological characteristics in upland fields with different utilization duration in Cixi, Zhejiang Province].

PubMed

Hu, Jun-Li; Lin, Xian-Gui; Yin, Rui; Chu, Hai-Yan; Zhang, Hua-Yong; Wang, Jun-Hua; Cao, Zhi-Hong

2008-09-01

The microbial number, microbial biomass, and enzymatic activities in five upland soils under agricultural utilization for 50-700 years were determined, with the correlations between soil microbiological characteristics and agricultural utilization duration analyzed. In the meantime, the functional diversity of microbes in soils having been utilized for 50, 100, and 700 years were investigated. The results showed that at the early stage (< 100 years) of agricultural utilization, the number of soil fungi (F) had a slight increase, while the bacterial number (B), B/F ratio, microbial biomass C (C(mic)), microbial biomass N (N(mic)), and the activities of catalase, invertase and urease all decreased markedly. After utilized for more than 100 years, the F decreased significantly, while the B, B/F ratio, C(mic), N(mic), and the activities of test enzymes all tended to increase. During the whole utilization period from 50 to 700 years, the C(mic)/N(mic) ratio had a significant increase with year. The Shannon, Simpson, and McIntosh indices of soil microbial community had the same responses to the agricultural utilization duration as the bacterial number, microbial biomass, and enzymatic activities. All of these indicated that in the upland fields in Cixi of Zhejiang Province, shifts of soil microbial community occurred with increasing agricultural utilization duration, and soil microbiological quality had an overall increase after 100 years agricultural utilization.

The elusive search for reniform nematode resistance in cotton

USDA-ARS?s Scientific Manuscript database

The reniform nematode (Rotylenchulus reniformis Linford and Oliveira) has emerged as the most important plant parasitic nematode of cotton in the US cotton belt. Success in the development of reniform nematode resistant upland cotton cultivars (Gossypium hirsutum L.) has not been realized despite ov...

Breeding potential of elite Pee Dee germplasm in Upland cotton breeding programs

USDA-ARS?s Scientific Manuscript database

Successful plant breeding programs begin with parental line selection. Effective parental line selection is facilitated when the breeding potential of candidate parental lines is known. Using topcross families involving germplasm representing eight US public cotton breeding programs, we evaluated th...

Genome-wide identification and characterization of TCP transcription factor genes in upland cotton (Gossypium hirsutum).

PubMed

Li, Wen; Li, Deng-Di; Han, Li-Hong; Tao, Miao; Hu, Qian-Qian; Wu, Wen-Ying; Zhang, Jing-Bo; Li, Xue-Bao; Huang, Geng-Qing

2017-08-31

TCP proteins are plant-specific transcription factors (TFs), and perform a variety of physiological functions in plant growth and development. In this study, 74 non-redundant TCP genes were identified in upland cotton (Gossypium hirsutum L.) genome. Cotton TCP family can be classified into two classes (class I and class II) that can be further divided into 11 types (groups) based on their motif composition. Quantitative RT-PCR analysis indicated that GhTCPs display different expression patterns in cotton tissues. The majority of these genes are preferentially or specifically expressed in cotton leaves, while some GhTCP genes are highly expressed in initiating fibers and/or elongating fibers of cotton. Yeast two-hybrid results indicated that GhTCPs can interact with each other to form homodimers or heterodimers. In addition, GhTCP14a and GhTCP22 can interact with some transcription factors which are involved in fiber development. These results lay solid foundation for further study on the functions of TCP genes during cotton fiber development.

Copper tolerance of the biomass crops Elephant grass (Pennisetum purpureum Schumach), Vetiver grass (Vetiveria zizanioides) and the upland reed (Phragmites australis) in soil culture.

PubMed

Liu, Xinghua; Shen, Yixing; Lou, Laiqing; Ding, Chenglong; Cai, Qingsheng

2009-01-01

Pot trials were conducted to study the influence of copper (Cu) on the growth and biomass of Elephant grass (EG, Pennisetum purpureum Schumach), Vetiver grass (VG, Vetiveria zizanioides) and the upland reed (UR, Phragmites australis). Cu toxicity in EG, VG and UR was positively correlated with the total and bioavailable Cu concentrations in the soil. Based on the EC50, dry weights, Cu contents, chlorophyll contents and photosynthesis rates, the Cu tolerance of the three species followed the trend EGNVGNUR. There were no significant differences in the unit calorific values among the different plants, though the total calorific values of EG were higher than those of VG and UR due to its higher biomass. The addition of KH2PO4 to the soil decreased the bioavailability of Cu and the Cu uptake by plants. EG could therefore be a good candidate for growth on Cu-contaminated soils, especially those improved by phosphate.

GhNAC12, a neutral candidate gene, leads to early aging in cotton (Gossypium hirsutum L).

PubMed

Zhao, Fengli; Ma, Jianhui; Li, Libei; Fan, Shuli; Guo, Yaning; Song, Meizhen; Wei, Hengling; Pang, Chaoyou; Yu, Shuxun

2016-01-15

NAC (NAM, ATAF, and CUC) is one of the largest transcription factor families in plants, and its members play various roles in plant growth, development, and the response to biotic and abiotic stresses. Currently, 77 NAC genes have been reported in cotton (Gossypium hirsutum L.). And GhNAC12 showed up-regulation during leaf senescence, but its role in this process is poorly understood. In the present study, a preliminary function analysis of GhNAC12 was performed during leaf senescence. qRT-PCR analysis indicated that GhNAC12 expression increased during the early-aging process and the aging of cotyledons. Additionally, we observed that overexpression of GhNAC12 in Arabidopsis led to early senescence (early aging). Our findings suggest that GhNAC12 is a candidate gene for early aging in upland cotton cultivars. Neutrality tests suggested that there was no selection pressure imposed on GhNAC12 during the domestication of upland cotton. Copyright © 2015 Elsevier B.V. All rights reserved.

Functional Characterization of a Dihydroflavanol 4-Reductase from the Fiber of Upland Cotton (Gossypium hirsutum).

PubMed

Wang, Le; Zhu, Yue; Wang, Peng; Fan, Qiang; Wu, Yao; Peng, Qing-Zhong; Xia, Gui-Xian; Wu, Jia-He

2016-01-26

Dihydroflavanol 4-reductase (DFR) is a key later enzyme involved in two polyphenols' (anthocyanins and proanthocyanidins (PAs)) biosynthesis, however it is not characterized in cotton yet. In present reports, a DFR cDNA homolog (designated as GhDFR1) was cloned from developing fibers of upland cotton. Silencing GhDFR1 in cotton by virus-induced gene silencing led to significant decrease in accumulation of anthocyanins and PAs. More interestingly, based on LC-MS analysis, two PA monomers, (-)-epicatachin and (-)-epigallocatachin, remarkably decreased in content in fibers of GhDFR1-silenced plants, but two new monomers, (-)-catachin and (-)-gallocatachin were present compared to the control plants infected with empty vector. The ectopic expression of GhDFR1 in an Arabidopsis TT3 mutant allowed for reconstruction of PAs biosynthesis pathway and led to accumulation of PAs in seed coat. Taken together, these data demonstrate that GhDFR1 contributes to the biosynthesis of anthocyanins and PAs in cotton.

Upland Reticulate Mottling Reveals Soil Biophysical Processes across Scales: Development of Structured Heterogeneity in a Marine Terrace Chronosequence

NASA Astrophysics Data System (ADS)

Stonestrom, D. A.; Schulz, M. S.; Lawrence, C. R.; Bullen, T. D.; Fitzpatrick, J.; Kyker-Snowman, E.; Manning, J. E.; Mnich, M.

2015-12-01

Soils of the Santa Cruz (California, USA) marine terrace chronosequence display an evolving sequence of reticulate mottling from the youngest soil (65 ka) without mottles to the oldest soil (225 ka) with well-developed mottles. Mottles develop in soils forming from relatively uniform shoreline sediments, below the depth of bioturbation. Mottles consist of an interconnected network of low-chroma clay-and-carbon enriched central regions (gray; 2.5Y 6/1) bordered by bleached parent material (white; 2.5Y 8/1) within a diminishing matrix of high-chroma oxidized parent material (orange; 7.5YR 5/8). To explore the nature of mottle development, physical and chemical characteristics of mottle separates (orange, gray, and white) were compared through the deep time represented by the chronosequence. Mineralogical, isotopic, and surface-area differences among mottle separates indicate that centimeter-scale mass-transfer acting across millennia is an integral part of pedogenesis, weathering-front propagation, and carbon and nutrient transfer. Elemental analysis, electron microscopy, and iron-isotope systematics indicate that mottle development is driven by deep roots together with their fungal and microbial symbionts. The current work extends the known realm of upland mottling and shows that such features may be more common than previously recognized in semi-humid to arid regions. Deep soil horizons on old stable landforms develop reticulate mottling as the long-term imprint of rhizospheric processes that control pedogenesis, plant-community sustenance, and sequestration of carbon at depth in unsaturated zones.

Soil-vegetation relationships on a banded ironstone 'island', Carajás Plateau, Brazilian Eastern Amazonia.

PubMed

Nunes, Jaquelina A; Schaefer, Carlos E G R; Ferreira Júnior, Walnir G; Neri, Andreza V; Correa, Guilherme R; Enright, Neal J

2015-01-01

Vegetation and soil properties of an iron-rich canga (laterite) island on the largest outcrop of banded-iron formation in Serra de Carajás (eastern Amazonia, Brazil) were studied along a topographic gradient (738-762 m asl), and analyzed to test the hypothesis that soil chemical and physical attributes play a key role in the structure and floristic composition of these plant communities. Soil and vegetation were sampled in eight replicate plots within each of the four vegetation types. Surface (0-10 cm) soil samples from each plot were analyzed for basic cations, N, P and plant species density for all species was recorded. CCA ordination analysis showed a strong separation between forest and non-forest sites on the first axis, and between herbaceous and shrubby campo rupestre on the second axis. The four vegetation types shared few plant species, which was attributed to their distinctive soil environments and filtering of their constituent species by chemical, physical and hydrological constraints. Thus, we can infer that Edaphic (pedological) factors are crucial in explaining the types and distributions of campo rupestre vegetation associated with ferruginous ironstone uplands (Canga) in Carajás, eastern Amazonia, therefore the soil properties are the main drivers of vegetation composition and structure on these ironstone islands.

Distribution of tetraether lipids in agricultural soils - differentiation between paddy and upland management

NASA Astrophysics Data System (ADS)

Mueller-Niggemann, C.; Utami, S. R.; Marxen, A.; Mangelsdorf, K.; Bauersachs, T.; Schwark, L.

2015-10-01

Insufficient knowledge of the composition and variation of isoprenoid and branched glycerol dialkyl glycerol tetraethers (GDGTs) in agricultural soils exists, despite of the potential effect of different management types (e.g. soil/water and redox conditions, cultivated plants) on GDGT distribution. Here, we determined the influence of different soil management types on the GDGT composition in paddy (flooded) and adjacent upland (non-flooded) soils, and if available also forest, bushland and marsh soils. To compare the local effects on GDGT distribution patterns, we collected comparable soil samples in various locations from tropical (Indonesia, Vietnam and Philippines) and subtropical (China and Italy) sites. We found that differences in the distribution of isoprenoid GDGTs (iGDGTs) as well as of branched GDGTs (brGDGTs) are predominantly controlled by management type and only secondarily by climatic exposition. In general upland soil had higher crenarchaeol contents than paddy soil, which on the contrary was more enriched in GDGT-0. The GDGT-0 / crenarchaeol ratio was 3-27 times higher in paddy soil and indicates the enhanced presence of methanogenic archaea, which were additionally linked to the number of rice cultivation cycles per year (higher number of cycles was coupled with an increase in the ratio). The TEX86 values were 1.3 times higher in upland, bushland and forest soils than in paddy soils. In all soils brGDGT predominated over iGDGTs, with the relative abundance of brGDGTs increasing from subtropical to tropical soils. Higher BIT values in paddy soils compared to upland soils together with higher BIT values in soil from subtropical climates indicate effects on the amounts of brGDGT through differences in management as well as climatic zones. In acidic soil CBT values correlated well with soil pH. In neutral to alkaline soils, however, no apparent correlation but an offset between paddy and upland managed soils was detected, which may suggest that soil moisture may exert an additional control on the CBT in these soils. Lower MBT' values and calculated temperatures (TMC) in paddy soils compared to upland soils may indicate a management (e.g. enhanced soil moisture through flooding practises) induced effect on mean annual soil temperature (MST).

Long-Term Effects of Dredging Operations Program. Long-Term Evaluation of Plants and Animals Colonizing Contaminated Estuarine Dredged Material Placed in Both Upland and Wetland Environments

DTIC Science & Technology

1991-09-01

MP D-91-5, September 1991 References Beckett, P. H. T., and Davis, R. D. 1977. Upper critical levels of toxic elements in plants. New Phytology 79:95...and ryegrass. New Phytology 80:23-42. Davis, R. D., Beckett, P. H. T., and Wollan, E. 1978. Critical levels of twenty potentially toxic elements in

76 FR 51929 - Endangered and Threatened Wildlife and Plants; 90-Day Finding on a Petition To Delist the Valley...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-19

... shrub component of riparian forests and adjacent uplands along river corridors of the Central Valley... elderberry shrubs (Barr 1991, p. 4). The larvae hatch in a few days and bore into living stems that are at...

Final Programmatic Environmental Assessment for Test Area C-74 Complex, Eglin Air Force Base, Florida

DTIC Science & Technology

2003-08-18

Sarracenis purpurea Green Anole Anolis carolinensis Red Titi Cyrilla racemiflora Garter Snake Thamnophis sirtalis Tulip Poplar Liriodendrom...Tephrosia mohrii) Eglin’s open canopy Sandhills and upland pine forest Sweet Pitcher Plant ( Sarracenia rubra) Wet flatwoods, wet prairies, and baygalls

Switchgrass ecotypes alter microbial contribution to deep-soil C

USDA-ARS?s Scientific Manuscript database

Switchgrass (Panicum virgatum L.) is a C4, perennial grass that is being developed as a bioenergy crop for the United States. While aboveground biomass production is well documented for switchgrass ecotypes (lowland, upland), little is known about the impact of plant belowground productivity on mic...

Phenological responses of juvenile pecan and white oak on an upland site

USDA-ARS?s Scientific Manuscript database

Pecan (Carya illinoiensis) and white oak (Quercus alba) produce multiple products and wildlife values, but their phenological responses to N fertilization have not been well characterized in an mixed species agroforestry practice. We compared tree height at planting and for six consecutive growing ...

77 FR 37702 - Grays Lake National Wildlife Refuge, Caribou and Bonneville Counties, ID; Comprehensive...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-22

... conserving wildlife and their habitats, CCPs identify compatible wildlife-dependent recreational... and objectives that will ensure the best possible approach to wildlife, plant, and habitat.... The remaining habitats are comprised of upland sagebrush, dry grass meadows, willow, and aspen. There...

The Role of Social Constructions and Biophysical Attributes of the Environment in Decision-Making in the Context of Biofuels and Rubber Production Partnership Regimes in Upland Philippines

NASA Astrophysics Data System (ADS)

Montefrio, M. F.

2012-12-01

Burgeoning attention in biofuels and natural rubber has spurred interest among governments and private companies in integrating marginalized communities into global commodity markets. Upland farmers from diverse cultural backgrounds and biophysical settings today are deciding whether to agree with partnership proposals from governments and private firms to grow biofuels and natural rubber. In this paper, I examine whether upland farmers' socio-environmental constructions (evaluative beliefs, place satisfaction, and ecological worldviews) and the actual biophysical attributes (land cover and soil types) of upland environments, respectively, function as significant predictors of the intent and decisions of indigenous and non-indigenous farmers to cooperate with government and private actors to establish certain biofuel crops and natural rubber production systems in Palawan, Philippines. Drawing from ethnography and statistical analysis of household surveys, I propose that social constructions and the biophysical attributes of the environment are closely related with each other and in turn both influence individual decision-making behavior in resource-based production partnership regimes. This has significant implications on the resilience of socio-ecological systems, particularly agro-ecosystems, as certain upland farmers prefer to engage in intensive, monocrop production of biofuels and natural rubber on relatively more biodiverse areas, such as secondary forests and traditional shifting cultivation lands. The study aims to advance new institutional theories of resource management, particularly Ostrom's Institutional Analysis and Development and Socio-Ecological Systems frameworks, and scholarship on environmental decision-making in the context of collective action.

Ghost forest creation and the conversion of uplands to wetlands

NASA Astrophysics Data System (ADS)

Kirwan, M. L.; Schieder, N. W.; Reay, W.

2017-12-01

Global sea level rise rates began accelerating sharply in the late 19th century, with an approximate tripling in sea level rise rates in many regions of the world. Some portions of the coastal landscape, such as marshes and barrier islands, survive relative sea level rise by natural eco-geomorphic processes that allow them to build elevation vertically and migrate landward. In contrast, adjacent uplands typically occupied by forests and agricultural fields have limited ability to resist the impacts of sea level rise. This portion of the coastal landscape consists of mostly salt intolerant plants, receives little mineral sediment deposition, and rarely builds elevation through the accumulation of soil organic matter. Thus, ghost forests- dead trees surrounded by marshland- are a prominent feature of many low-relief coastal landscapes, and represent a striking visual indicator of upland to wetland conversion. Here, we report preliminary results of several efforts designed to quantify rates and drivers of upland to wetland conversion in the mid-Atlantic region of the United States. Drone based canopy monitoring and ground-based seedling experiments suggest that ghost forests are created by episodic, storm-driven adult tree mortality paired with continuous seedling mortality. Preliminary comparisons between sediment cores and historical photographs from 5 sites in Maryland, Virginia, and North Carolina suggest that modern coastal forest retreat is 2-10 times faster than late-Holocene retreat rates, and that rates have accelerated in most decades since the 1930's. Finally, historical T-Sheet maps suggest that approximately 100,000 acres (400 km2) of uplands have converted to wetlands in the Chesapeake region, and that about 1/3 of all present-day marsh was created by upland drowning since the late 19th Century. Together, these observations indicate rapid coastal transgression, where low-relief, terrestrial portions of the coastal landscape are perhaps more sensitive to sea level rise than better studied, more seaward portions.

Breakpoint analysis and relations of nutrient and turbidity stressor variables to macroinvertebrate integrity in streams in the Crawford-Mammoth Cave Uplands Ecoregion, Kentucky, for the development of nutrient criteria

USGS Publications Warehouse

Crain, Angela S.; Caskey, Brian J.

2010-01-01

To assist Kentucky in refining numeric nutrient criteria in the Pennyroyal Bioregion, the U.S. Geological Survey and the Kentucky Division of Water collected and analyzed water chemistry, turbidity, and biological-community data from 22 streams throughout the Crawford-Mammoth Cave Upland ecoregion (U.S. Environmental Protection Agency Level IV Ecoregion, 71a) within the Pennyroyal Bioregion from September 2007 to May 2008. Statistically significant and ecologically relevant relations among the stressor (total phosphorus, total nitrogen, and turbidity) variables and response (macroinvertebrate-community attributes) variables and the breakpoint values of biological-community attributes and metrics in response to changes in stressor variables were determined. Thirteen of 18 macroinvertebrate attributes were significantly and ecologically correlated (p-value < 0.10) with at least one nutrient measure. Total number of individuals, Ephemeroptera-Plecoptera-Trichoptera richness, and average tolerance value were macroinvertebrate measures that most strongly correlated with the concentrations of nutrients. Comparison of the average macroinvertebrate-breakpoint value for the median concentration of total phosphorus (TP, 0.033 mg/L) and for median concentration of total nitrogen (TN, 1.1 mg/L) to Dodds' trophic classification for TP and TN indicates streams in the Crawford-Mammoth Cave Uplands ecoregion within the Pennyroyal Bioregion would be classified as mesotrophic-eutrophic. The biological breakpoint relations with median concentrations of TP in this study were similar to the U.S. Environmental Protection Agency proposed numeric TP criteria (0.037 mg/L), but were 1.5 times higher than the proposed numeric criteria for concentrations of TN (0.69 mg/L). No sites were impacted adversely using median turbidity values based on a 25 Formazin nephelometric turbidity unit biological threshold. The breakpoints determined in this study, in addition to Dodds' trophic classifications, were used as multiple lines of evidence to show changes in macroinvertebrate community and attributes based on exposure to nutrients.

Identification of drought-responsive genes in roots of upland rice (Oryza sativa L)

PubMed Central

Rabello, Aline R; Guimarães, Cléber M; Rangel, Paulo HN; da Silva, Felipe R; Seixas, Daniela; de Souza, Emanuel; Brasileiro, Ana CM; Spehar, Carlos R; Ferreira, Márcio E; Mehta, Ângela

2008-01-01

Background Rice (Oryza sativa L.) germplasm represents an extraordinary source of genes that control traits of agronomic importance such as drought tolerance. This diversity is the basis for the development of new cultivars better adapted to water restriction conditions, in particular for upland rice, which is grown under rainfall. The analyses of subtractive cDNA libraries and differential protein expression of drought tolerant and susceptible genotypes can contribute to the understanding of the genetic control of water use efficiency in rice. Results Two subtractive libraries were constructed using cDNA of drought susceptible and tolerant genotypes submitted to stress against cDNA of well-watered plants. In silico analysis revealed 463 reads, which were grouped into 282 clusters. Several genes expressed exclusively in the tolerant or susceptible genotypes were identified. Additionally, proteome analysis of roots from stressed plants was performed and 22 proteins putatively associated to drought tolerance were identified by mass spectrometry. Conclusion Several genes and proteins involved in drought-response, as well as genes with no described homologs were identified. Genes exclusively expressed in the tolerant genotype were, in general, related to maintenance of turgor and cell integrity. In contrast, in the susceptible genotype, expression of genes involved in protection against cell damage was not detected. Several protein families identified in the proteomic analysis were not detected in the cDNA analysis. There is an indication that the mechanisms of susceptibility to drought in upland rice are similar to those of lowland varieties. PMID:18922162

Maritime climate influence on chaparral composition and diversity in the coast range of central California.

PubMed

Vasey, Michael C; Parker, V Thomas; Holl, Karen D; Loik, Michael E; Hiatt, Seth

2014-09-01

We investigated the hypothesis that maritime climatic factors associated with summer fog and low cloud stratus (summer marine layer) help explain the compositional diversity of chaparral in the coast range of central California. We randomly sampled chaparral species composition in 0.1-hectare plots along a coast-to-interior gradient. For each plot, climatic variables were estimated and soil samples were analyzed. We used Cluster Analysis and Principle Components Analysis to objectively categorize plots into climate zone groups. Climate variables, vegetation composition and various diversity measures were compared across climate zone groups using ANOVA and nonmetric multidimensional scaling. Differences in climatic variables that relate to summer moisture availability and winter freeze events explained the majority of variance in measured conditions and coincided with three chaparral assemblages: maritime (lowland coast where the summer marine layer was strongest), transition (upland coast with mild summer marine layer influence and greater winter precipitation), and interior sites that generally lacked late summer water availability from either source. Species turnover (β-diversity) was higher among maritime and transition sites than interior sites. Coastal chaparral differs from interior chaparral in having a higher obligate seeder to facultative seeder (resprouter) ratio and by being dominated by various Arctostaphylos species as opposed to the interior dominant, Adenostoma fasciculatum. The maritime climate influence along the California central coast is associated with patterns of woody plant composition and β-diversity among sites. Summer fog in coastal lowlands and higher winter precipitation in coastal uplands combine to lower late dry season water deficit in coastal chaparral and contribute to longer fire return intervals that are associated with obligate seeders and more local endemism. Soil nutrients are comparatively less important in explaining plant community composition, but heterogeneous azonal soils contribute to local endemism and promote isolated chaparral patches within the dominant forest vegetation along the coast.

Backwaters in the upper reaches of reservoirs produce high densities of age-0 crappies

USGS Publications Warehouse

Dagel, Jonah D.; Miranda, Leandro E.

2012-01-01

Reservoir backwaters are aquatic habitats in floodplains of reservoir tributaries that are permanently or periodically flooded by the reservoir. Like many reservoir arms, backwaters are commonly shallow, littoral habitats, but they differ from arms in various respects, including their support of primarily wetland plant assemblages that are tolerant to flooding. Elsewhere, the reservoir floods mainly upland plants that are less tolerant to flooding, producing a band of barren shoreline along the fluctuation zone. We investigated differences in relative abundance of age-0 crappies Pomoxis spp. in backwaters and arms of widely fluctuating flood control reservoirs, examined the effect of water level, and estimated the likelihood and timing with which these habitats are flooded annually. Higher catch rates of age-0 crappies were obtained in backwater habitats than in arm habitats. When inundated during the crappie spawning season, backwaters provided vegetated habitat at lower water levels than arms. Backwaters flooded earlier than arms and remained flooded longer to provide prolonged nursery habitat. Whereas vegetated habitat was inundated almost yearly in backwaters and arms, inundation that was timed to the onset of spawning occurred less regularly. Because of differences in water elevation, vegetated habitats were flooded in time for crappie spawning about every other year in backwaters but only every third year in arms. Recruitment of age-0 crappies was inversely correlated with high water levels during the months preceding the spawning period, perhaps because early flooding degraded the vegetation. Our results suggest that water levels may be managed during late winter and spring to regularly flood wetland vegetation communities in backwaters; however, water levels should be maintained at or below normal pool and should only irregularly flood upland vegetation in reservoir arms to promote the preservation of such vegetation. Furthermore, management efforts to enhance crappie recruitment should consider the enhancement and preservation of backwaters.

The Bashakill: A Heritage for All Time.

ERIC Educational Resources Information Center

Cross, Robert F.

1979-01-01

The Bashakill Wetland has been acquired by the State of New York. Located in the southern foothills of the Catskill Mountains, this 100 century-old marsh with adjacent upland area serves as home for rare and unique plants and animals and as natural protection against floods and erosion. (RE)

Growth and forage quality of four southern browse species

Treesearch

R. M. Blair; L. K. Halls

1968-01-01

Rusty blackhaw (Viburnum rufidulum) , yaupon (Ilex vomitoria), common greenbrier (Smilax rotundifolia), and yellow jessamine (Gelsemium sempervirens) are major sources of deer food in upland pine-hardwood forests of the South. In the study reported here, the quality of forage on these plants was related to their rate of growth.

Survey of thrips species infesting cotton across the southern U.S. cotton belt

USDA-ARS?s Scientific Manuscript database

A survey investigating the composition of adult thrips species and the effect of preventive, at-plant insecticides on this composition was conducted at multiple locations across the upland U.S. Cotton Belt in 2009 and 2010. Small-plot experiments included insecticide seed treatments containing imid...

Identifying drought adaptive traits in upland cotton using a proximal sensing cart for high-throughput phenotyping

USDA-ARS?s Scientific Manuscript database

Field-based high-throughput phenotyping is an emerging approach to characterize difficult, time-sensitive plant traits in relevant growing conditions. Proximal sensing carts have been developed as an alternative platform to more costly high-clearance tractors for phenotyping dynamic traits in the fi...

Genetic characterization of reniform nematode resistance for Gossypium arboreum accession PI 417895

USDA-ARS?s Scientific Manuscript database

Reniform nematode (Rotylenchulus reniformis) is an important root pathogen of cotton in the southeastern United States and management is hindered by the lack of host-plant resistance in upland cotton (Gossypium hirsutum). The G. arboreum germplasm collection is an important source of resistance. Tra...

Switchgrass cultivars alter microbial contribution to deep soil C in Nebraska

USDA-ARS?s Scientific Manuscript database

Switchgrass (Panicum virgatum L.) is a C4, perennial grass that is being developed as a bioenergy crop for the United States. While aboveground biomass production is well documented for switchgrass ecotypes (lowland, upland) and cultivars, there has been little focus on the impact of plant belowgro...

Chromosomal assignment of ALFP markers in upland cotton (Gossypium hirsutum L.)

USDA-ARS?s Scientific Manuscript database

In this research, we used two sets of cotton aneuploid (G. hirsutum × G. tomentosum and G. hirsutum × G. barbadense) plants to locate AFLP markers to chromosome using deletion analysis method. Thirty-eight primer combinations were used to generate 608 polymorphic AFLP markers. Ninety-eight AFLP mark...

Survival and growth of 31 Populus clones in South Carolina

Treesearch

David R. Coyle; Mark D. Coleman; Jaclin A. Durant; Lee A. Newman

2006-01-01

Populus species and hybrids have many practical applications, but clonal performance is relatively undocumented in the southeastern United States outside of the Mississippi River alluvial floodplain. In spring 2001, 31 Populus clones were planted on two sites in South Carolina, USA. The sandy, upland site received irrigation and...

Inundation and precipitation effects on growth and flowering of the high marsh species Juncus gerardii

EPA Science Inventory

Juncus gerardii Loisel., black needle rush, is a high latitude cosmopolitan plant species and, within salt marshes of the mid-Atlantic and New England coasts, occupies a narrow belt along the marsh-upland border. Examination of historic aerial photography, vegetation resurveys, a...

Rice production in relation to soil quality under different rice-based cropping systems

NASA Astrophysics Data System (ADS)

Tran Ba, Linh; Sleutel, Steven; Nguyen Van, Qui; Thi, Guong Vo; Le Van, Khoa; Cornelis, Wim

2016-04-01

Soil quality of shallow paddy soils may be improved by introducing upland crops and thus a more diverse crop cultivation pattern. Yet, the causal relationship between crop performance and enhanced soil traits in rice-upland crop rotations remains elusive. The objectives of this study were to (i) find correlations among soil properties under different rice-upland crop systems and link selected soil properties to rice growth and yield, (ii) present appropriate values of soil parameters for sustainable rice productivity in heavy clay soil, (iii) evaluate the effect of rotating rice with upland crops on rice yield and economic benefit in a long-term experiment. A rice-upland crop rotational field experiment in the Vietnamese Mekong delta was conducted for 10 years using a randomized complete block design with four treatments and four replications. Treatments were: (i) rice-rice-rice (control - conventional system as farmers' practice), (ii) rice-maize-rice, (iii) rice-mung bean-rice, and (iv) rice-mung bean-maize. Soil and plant sampling were performed after harvest of the rice crop at the end of the final winter-spring cropping season (i.e. year 10). Results show differences in rice growth and yield, and economic benefit as an effect of the crop rotation system. These differences were linked with changes in bulk density, soil porosity, soil aggregate stability index, soil penetration resistance, soil macro-porosity, soil organic carbon, acid hydrolysable soil C and soil nutrient elements, especially at soil depth of 20-30 cm. This is evidenced by the strong correlation (P < 0.01) between rice plant parameters, rice yield and soil properties such as bulk density, porosity, penetration resistance, soil organic carbon and Chydrolysable. It turned out that good rice root growth and rice yield corresponded to bulk density values lower than 1.3 Mg m-3, soil porosity higher than 50%, penetration resistance below 1.0 MPa, and soil organic carbon above 25 g kg-1. The optimal soil depth without restriction for rice root elongation was at least 25 cm from the soil surface. We suggest these values as indicative for optimal physical soil quality when growing rice in fine-textured alluvial soils and their definition as a first step towards presenting real threshold values.

Reduced ABA Accumulation in the Root System is Caused by ABA Exudation in Upland Rice (Oryza sativa L. var. Gaoshan1) and this Enhanced Drought Adaptation.

PubMed

Shi, Lu; Guo, Miaomiao; Ye, Nenghui; Liu, Yinggao; Liu, Rui; Xia, Yiji; Cui, Suxia; Zhang, Jianhua

2015-05-01

Lowland rice (Nipponbare) and upland rice (Gaoshan 1) that are comparable under normal and moderate drought conditions showed dramatic differences in severe drought conditions, both naturally occurring long-term drought and simulated rapid water deficits. We focused on their root response and found that enhanced tolerance of upland rice to severe drought conditions was mainly due to the lower level of ABA in its roots than in those of the lowland rice. We first excluded the effect of ABA biosynthesis and catabolism on root-accumulated ABA levels in both types of rice by monitoring the expression of four OsNCED genes and two OsABA8ox genes. Next, we excluded the impact of the aerial parts on roots by suppressing leaf-biosynthesized ABA with fluridone and NDGA (nordihydroguaiaretic acid), and measuring the ABA level in detached roots. Instead, we proved that upland rice had the ability to export considerably more root-sourced ABA than lowland rice under severe drought, which improved ABA-dependent drought adaptation. The investigation of apoplastic pH in root cells and root anatomy showed that ABA leakage in the root system of upland rice was related to high apoplastic pH and the absence of Casparian bands in the sclerenchyma layer. Finally, taking some genes as examples, we predicted that different ABA levels in rice roots stimulated distinct ABA perception and signaling cascades, which influenced its response to water stress. © The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Structure and Function of Ephemeral Streams in the Arid and Semiarid Southwest: Implications for Conservation and Management

DTIC Science & Technology

2015-07-24

stream flow, trade-offs were apparent between riparian plant biomass (high at wetter sites) and plant species diversity (high at dry sites with...iv) between wet and dry seasons? Technical Approach. A space-for-time substitution approach was followed in which changes across spatial water...For arthropods, pitfall traps were set during dry and wet seasons in channel, riparian and upland locations in canyon and piedmont reaches to

Microbial community dynamics and methane, carbon dioxide, oxygen, and nitrous oxide concentrations in upland forest and riparian soils across a seasonal gradient of fully saturated soils to completely dried soils

NASA Astrophysics Data System (ADS)

Jones, R. T.; McGlynn, B. L.; McDermott, T.; Dore, J. E.

2015-12-01

Gas concentrations (CH4, CO2, N2O, and O2), soil properties (soil water content and pH), and microbial community composition were measured from soils at 32 sites across the Stringer Creek Watershed in the Tenderfoot Creek Experimental Forest 7 times between June 3, 2013 and September 20, 2013. Soils were fully saturated during the initial sampling period and dried down over the course of the summer. Soils and gas were sampled from 5cm and 20cm at each site and also at 50cm at eight riparian sites. In total, 496 individual soil samples were collected. Soil moisture ranged from 3.7% to fully saturated; soil pH ranged from 3.60 to 6.68. Methane concentrations in soils ranged from 0.426 ppm to 218 ppm; Carbon dioxide concentrations ranged from 550 ppm to 42,990 ppm; Nitrous oxide concentrations ranged from 0.220 ppm to 2.111 ppm; Oxygen concentrations ranged from 10.2% to 21.5%. Soil microbial communities were characterized by DNA sequences covering the V4 region of the 16S rRNA gene. DNA sequences were generated (~30,000,000 sequences) from the 496 soil samples using the Illumina MiSeq platform. Operational Taxonomic Units were generated using USEARCH, and representative sequences were taxonomically classified according the Ribosomal Database Project's taxonomy scheme. Analysis of similarity revealed that microbial communities found within a landscape type (high upland forest, low upland forest, riparian) were more similar than among landscape types (R = 0.600; p<0.001). Similarly, communities from unique site x depths were similar across the 7 collection periods (R = 0.646; p<0.001) despite changes in soil moisture. Euclidean distances of soil properties and gas concentrations were compared to Bray-Curtis community dissimilarity matrices using Mantel tests to determine how community structure co-varies with the soil environment and gas concentrations. All variables measured significantly co-varied with microbial community membership (pH: R = 0.712, p < 0.001; CO2: R = 0.578, p < 0.001; O2: R = 0.517, p < 0.001; Soil moisture: R = 0.408, p < 0.001; N2O: R = 0.218, p = 0.003; CH4: R = 0.195, p = 0.008). Despite the rather low co-variation between methane concentrations and microbial community composition, relative abundances of methanotrophic and methanogenic lineages did co-vary strongly with methane concentrations.

Unusual larval habitats and life history of chironomid (Diptera) genera

USGS Publications Warehouse

Hudson, Patrick L.

1987-01-01

Ninety-three genera, representing all subfamilies of Chironomidae, are organized into 9 categories of unusual habitats or life history including hygropetric, riparian (bank, floodplain, upland), hyporheic, symbiotic, and intertidal; others live in water held in plants or mine into unusual substrates. In riparian zones precise location of optimum habitat is difficult to determine as is definition of habitat within the continuum from shoreline to upland areas. The ecological importance of the riparian group appears to lie in its processing of coarse particulate matter along the floodplain of streams and rivers. All riparian genera are zoogeographically useful and can be used in reconstructing evolutionary dispersal pathways because they are adapted to unique habits that have remained largely undisturbed by human activities.

Frequency of Cyanogenesis in Tropical Rainforests of Far North Queensland, Australia

PubMed Central

MILLER, REBECCA E.; JENSEN, RIGEL; WOODROW, IAN E.

2006-01-01

• Background and Aims Plant cyanogenesis is the release of toxic cyanide from endogenous cyanide-containing compounds, typically cyanogenic glycosides. Despite a large body of phytochemical, taxonomic and ecological work on cyanogenic species, little is known of their frequency in natural plant communities. This study aimed to investigate the frequency of cyanogenesis in Australian tropical rainforests. Secondary aims were to quantify the cyanogenic glycoside content of tissues, to investigate intra-plant and intra-population variation in cyanogenic glycoside concentration and to appraise the potential chemotaxonomic significance of any findings in relation to the distribution of cyanogenesis in related taxa. • Methods All species in six 200 m2 plots at each of five sites across lowland, upland and highland tropical rainforest were screened for cyanogenesis using Feigl–Anger indicator papers. The concentrations of cyanogenic glycosides were accurately determined for all cyanogenic individuals. • Key Results Over 400 species from 87 plant families were screened. Overall, 18 species (4·5 %) were cyanogenic, accounting for 7·3 % of total stem basal area. Cyanogenesis has not previously been reported for 17 of the 18 species, 13 of which are endemic to Australia. Several species belong to plant families or orders in which cyanogenesis has been little reported, if at all (e.g. Elaeocarpaceae, Myrsinaceae, Araliaceae and Lamiaceae). A number of species contained concentrations of cyanogenic glycosides among the highest ever reported for mature leaves—up to 5·2 mg CN g−1 d. wt, for example, in leaves of Elaeocarpus sericopetalus. There was significant variation in cyanogenic glycoside concentration within individuals; young leaves and reproductive tissues typically had higher cyanogen content. In addition, there was substantial variation in cyanogenic glycoside content within populations of single species. • Conclusions This study expands the limited knowledge of the frequency of cyanogenesis in natural plant communities, includes novel reports of cyanogenesis among a range of taxa and characterizes patterns in intra-plant and intra-population variation of cyanogensis. PMID:16520340

High temporal and spatial variability of atmospheric-methane oxidation in Alpine glacier-forefield soils.

PubMed

Chiri, Eleonora; Nauer, Philipp A; Rainer, Edda-Marie; Zeyer, Josef; Schroth, Martin H

2017-07-07

Glacier-forefield soils can provide a substantial sink for atmospheric CH 4 , facilitated by aerobic methane-oxidizing bacteria (MOB). However, MOB activity, abundance, and community structure may be affected by soil age, location in different forefield landforms, and temporal fluctuations in soil-physical parameters. We assessed spatial and temporal variability of atmospheric CH 4 oxidation in an Alpine glacier forefield during the snow-free season 2013. We quantified CH 4 flux in soils of increasing age and in different landforms (sandhill, terrace, floodplain) using soil-gas-profile and static flux-chamber methods. To determine MOB abundance and community structure, we employed pmoA -gene-based quantitative PCR and targeted-amplicon sequencing. Uptake of CH 4 increased in magnitude and decreased in variability with increasing soil age. Sandhill soils exhibited CH 4 uptake ranging from -0.03- -3.7 mg CH 4 m -2 d -1 Floodplain and terrace soils exhibited smaller uptake and even intermittent CH 4 emissions. Linear mixed-effect models indicated that soil age and landform were dominating factors shaping CH 4 flux, followed by cumulative rainfall (weighted sum ≤ 4 d prior to sampling). Of 31 MOB operational taxonomic units retrieved, ∼30% were potentially novel, and ∼50% were affiliated with Upland Soil Clusters gamma and alpha. The MOB community structures in floodplain and terrace soils were nearly identical, but differed significantly from highly variable sandhill-soil communities. We conclude that soil age and landform modulate the soil CH 4 sink strength in glacier forefields, and recent rainfall affects its short-term variability. This should be taken into account when including this environment in future CH 4 inventories. Importance Oxidation of methane (CH 4 ) in well-drained, "upland" soils is an important mechanism for the removal of this potent greenhouse gas from the atmosphere. It is largely mediated by aerobic, methane-oxidizing bacteria (MOB). Whereas there is abundant information on atmospheric CH 4 oxidation in mature upland soils, little is known about this important function in young, developing soils such as those found in glacier forefields, where new sediments are continuously exposed to the atmosphere as a result of glacial retreat.In this field-based study we investigated spatial and temporal variability of atmospheric CH 4 oxidation and associated MOB communities in Alpine glacier-forefield soils, aiming at better understanding factors that shape the sink for atmospheric CH 4 in this young soil ecosystem. The study contributes to the knowledge on the dynamics of atmospheric CH 4 oxidation in developing upland soils, and represents a further step towards the inclusion of Alpine glacier-forefield soils in global CH 4 inventories. Copyright © 2017 American Society for Microbiology.

Dry creek long-term watershed study: the effects of harvesting in streamside management zones and adjacent uplands of riparian corridors on avian communities in the Coastal Plain of Georgia

Treesearch

Merideth P. Grooms; J. Drew Lanham; T. Bently Wigley

2006-01-01

We evaluated the effects of Best Management Practices (BMPs) harvesting on avian communities associated with headwater streams in the Georgia Coastal Plain. Two watersheds served as references, with no timber harvesting, and two treatment watersheds were clearcut with retention of Streamside Management Zones (SMZs) according to Georgia BMPs for forestry. Bird...

Pipeline corridors through wetlands -- Impacts on plant communities: Norris Brook Crossing Peabody, Massachusetts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shem, L.M.; Van Dyke, G.D.; Zimmerman, R.E.

1994-12-01

The goal of the Gas Research Institute Wetland Corridors Program is to document impacts of existing pipelines on the wetlands they traverse. To accomplish this goal, 12 existing wetland crossings were surveyed. These sites varied in elapsed time since pipeline construction, wetland type, pipeline installation techniques, and right-of-way (ROW) management practices. This report presents the results of a survey conducted August 17--19, 1992, at the Norris Brook crossing in the town of Peabody, Essex County, Massachusetts. The pipeline at this site was installed during September and October 1990. A backhoe was used to install the pipeline. The pipe was assembledmore » on the adjacent upland and slid into the trench, after which the backhoe was used again to fill the trench and cover the pipeline. Within two years after pipeline construction, a dense vegetative community, composed predominantly of native perennial species, had become established on the ROW. Compared with adjacent natural areas undisturbed by pipeline installation, there was an increase in purple loosestrife and cattail within the ROW, while large woody species were excluded from the ROW. As a result of the ROW`s presence, habitat diversity, edge-type habitat, and species diversity increased within the site. Crooked-stem aster, Aster prenanthoides (a species on the Massasschusetts list of plants of special concern), occurred in low numbers in the adjacent natural areas and had reinvaded the ROW in low numbers.« less

Evapotranspiration Dynamics and Effects on Groundwater Recharge and Discharge at the Tuba City, Arizona, Disposal Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

None, None

The U.S. Department of Energy Office of Legacy Management is evaluating groundwater flow and contaminant transport at a former uranium mill site near Tuba City, Arizona. We estimated effects of temporal and spatial variability in evapotranspiration (ET) on recharge and discharge within a groundwater model domain (GMD) as part of this evaluation. We used remote sensing algorithms and precipitation (PPT) data to estimate ET and the ET/PPT ratios within the 3531 hectare GMD. For the period from 2000 to 2012, ET and PPT were nearly balanced (129 millimeters per year [mm yr -1] and 130 mm yr -1, respectively; ET/PPTmore » = 0.99). However, seasonal and annual variability in ET and PPT were out of phase, and spatial variability in vegetation differentiated discharge and recharge areas within the GMD. Half of ET occurred during spring and early summer when PPT was low, and about 70% of PPT arriving in fall and winter was discharged as plant transpiration in the spring and summer period. Vegetation type and health had a significant effect on the site water balance. Plant cover and ET were significantly higher (1) during years of lighter compared to years of heavier grazing pressure, and (2) on rangeland protected from grazing compared to rangeland grazed by livestock. Heavy grazing increased groundwater recharge (PPT > ET over the 13-year period). Groundwater discharge (ET > PPT over the 13-year period) was highest in riparian phreatophyte communities but insignificant in desert phreatophyte communities impacted by heavy grazing. Grazing management in desert upland and phreatophyte communities may result in reduced groundwater recharge, increased groundwater discharge, and could be used to influence local groundwater flow.« less

Postdefoliation ecosystem carbon and water flux and canopy growth dynamics in sagebrush steppe bunchgrass

USDA-ARS?s Scientific Manuscript database

Developing land-use practices that lead to sustainable net primary productivity in rangelands are important, but understanding their consequences to population and community processes is not often accounted for in basic ecosystem studies. Grazed and ungrazed upland ecosystems generally do not diffe...

Assessing the diversity and composition of bacterial communities across a wetland, transition, upland gradient in Macon County Alabama

USDA-ARS?s Scientific Manuscript database

Wetlands provide essential functions to the ecosphere that range from water filtration to flood control. Current methods of evaluating the quality of wetlands include assessing vegetation, soil type, and period of inundation. With recent advances in molecular and bioinformatic techniques, measuremen...

Resistance of upland-rice lines to root-knot nematode, Meloidogyne incognita.

PubMed

Souza, D C T; Botelho, F B S; Rodrigues, C S; Furtini, I V; Smiderle, E C; de Matos, D L; Bruzi, A T

2015-12-21

Despite the benefits of crop rotation, occurrence of nematodes is a common problem for almost all crops within the Cerrado biome, especially for rice. The use of resistant cultivars is one of the main methods for control of nematodes. Thus, the present study aimed to evaluate the reaction of 36 upland-rice lines, with desirable agronomic characteristics, according to their resistance to root-knot nematodes (Meloidogyne incognita). The experimental design was entirely randomized with four replications. Each plot of land consisted of two rice plants in a 3-L vase. The plants were inoculated with 1000 eggs and eventual juveniles of the respective nematodes. Fifty-five days after the inoculation, the roots and the aerial part of the plant were weighed and the egg mass (EM) as well as the reproduction factor (Rf) were estimated. It was determined that the isolated use of EM was not beneficial in selecting rice lines resistant to the root-knot nematode. This procedure must, therefore, take into account the egg counting and the Rf, in order to improve the reliability of the selection. In our study, 30 evaluated lines were observed to be resistant. Among the recommended cultivars, only BRS Monarca had its performance susceptible to the studied nematode species.

Transcriptome analysis of nitric oxide-responsive genes in upland cotton (Gossypium hirsutum).

PubMed

Huang, Juan; Wei, Hengling; Li, Libei; Yu, Shuxun

2018-01-01

Nitric oxide (NO) is an important signaling molecule with diverse physiological functions in plants. It is therefore important to characterize the downstream genes and signal transduction networks modulated by NO. Here, we identified 1,932 differentially expressed genes (DEGs) responding to NO in upland cotton using high throughput tag sequencing. The results of quantitative real-time polymerase chain reaction (qRT-PCR) analysis of 25 DEGs showed good consistency. Gene Ontology (GO) and KEGG pathway were analyzed to gain a better understanding of these DEGs. We identified 157 DEGs belonging to 36 transcription factor (TF) families and 72 DEGs related to eight plant hormones, among which several TF families and hormones were involved in stress responses. Hydrogen peroxide and malondialdehyde (MDA) contents were increased, as well related genes after treatment with sodium nitroprusside (SNP) (an NO donor), suggesting a role for NO in the plant stress response. Finally, we compared of the current and previous data indicating a massive number of NO-responsive genes at the large-scale transcriptome level. This study evaluated the landscape of NO-responsive genes in cotton and identified the involvement of NO in the stress response. Some of the identified DEGs represent good candidates for further functional analysis in cotton.

Phenological responses of juvenile pecan and white oak on an upland site

Treesearch

D. M. Burner; D. K. Brauer; J. L. Snider; C. A. Harrington; P. A. Moore

2014-01-01

Pecan (Carya illinoiensis) and white oak (Quercus alba) produce multiple products and wildlife values, but their phenological responses to N fertilization have not been well characterized. We compared tree growth at planting and for six consecutive growing seasons during establishment (2003–2008, Test 1), and determined if...

75 FR 26979 - Piedmont National Wildlife Refuge, Jones and Jasper Counties, GA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-13

... acquisition; (3) forest and fire management and education; (4) cane break restoration; (5) invasive species... area with smaller burn units on a 2-year rotation. We would prioritize the need for removal of invasive... expand invasive plant species control from uplands to include other habitat types to reduce adverse...

Dissecting genotype × environment interactions and trait correlations present in the Pee Dee cotton germplasm collection following seventy years of plant breeding

USDA-ARS?s Scientific Manuscript database

Genotype × environment interactions and trait correlations significantly impact efforts to develop high yield, high quality, and environmentally stable Upland cotton (Gossypium hirsutum L.) cultivars. Knowledge of both can and should be used to design optimal breeding programs and effective selectio...

78 FR 70485 - Common Crop Insurance Regulations; Extra Long Staple Cotton Crop Provisions

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-26

...-0002] RIN 0563-AC41 Common Crop Insurance Regulations; Extra Long Staple Cotton Crop Provisions AGENCY... Cotton Crop Insurance Provisions to make the Extra Long Staple (ELS) Cotton Crop Insurance Provisions consistent with the Upland Cotton Crop Insurance Provisions and to allow a late planting period. The intended...

Social and economic value of riparian environments

Treesearch

Greg Jones

2008-01-01

Riparian areas commonly represent only a small percentage of a landscape, but typically are more structurally diverse and more productive in plant and animal biomass than adjacent upland areas. Yet, this small percentage of land area provides many benefits to society. These benefits, however, are not generally accounted for in market transactions. One exception to this...

Seasonal patterns of climate controls over nitrogen fixation by Alnus viridis subsp

Treesearch

Jennifer S. Mitchell; Roger W. Ruess

2009-01-01

Patterns of and controls over N2 fixation by green alder were studied in post-fire, mid-succession, and white spruce upland forests in interior Alaska, focusing on the hypothesis that ecosystem-level nitrogen (N) inputs decrease with successional development. N2-fixation rates tracked plant phenology during the 1997 (...

Registration of tufted-naked seed in upland cotton germplasm 9023n4t

USDA-ARS?s Scientific Manuscript database

A naked-tufted mutant called 9023n4t (PI 667553) was developed from the cultivar SC 9023 (Gossypium hirsutum L.) through chemical mutagenesis. This germplasm was developed by the Department of Plant and Soil Science, Texas Tech University and released in April, 2013. This mutant is quite unique sinc...

Registration of a tufted-naked seed upland cotton germplasm

USDA-ARS?s Scientific Manuscript database

A tufted-naked cotton (Gossypium hirsutum L.) mutant, 9023n4t (Reg. No. GP-971, PI 667553) was developed from the cultivar SC 9023 (9023) (PI 590933) through chemical mutagenesis. Germplasm line 9023n4t was developed by the Department of Plant and Soil Science, Texas Tech University, and released in...

A constructed wet meadow model for forested lands in the Southwest

Treesearch

Dave Pawelek; Roy Jemison; Daniel Neary

1999-01-01

Improving primary roads in the Zuni Mountains of New Mexico must take into consideration the wet meadows and upland areas. This study looks at spring flow rates, erosion, channels and changes in plant cover and composition. The goal is to help planners design environmentally sensitive roadways for wet meadow areas.

Loblolly Pine Growth 16 Years After Four Site Preparation Treatments

Treesearch

John C. Adams; Clyde Vidrine

2002-01-01

Thirteen-year growth results of 1-0 planted loblolly pine seedlings (Pinus taeda L.) on differently prepared upland mixed pine-hardwood sites located in north western Louisiana are presented. The study was designed as a randomized complete block consisting of three blocks of four site preparation treatments, which included: chop and burn, windrow,...

Evaluations of Fusarium wilt resistance in Upland cotton from Uzbek cotton germplasm resources.

USDA-ARS?s Scientific Manuscript database

Fusarium oxysporum f. sp. vasinfectum Atk. Sny & Hans (FOV), in combination with Verticillium dahliae Kleb, causes a wilt disease complex in cotton that significantly reduces yield. A highly virulent strain of FOV, No. 316, was isolated that caused up to 80% plant death in commercial cotton in Uzbe...

75 FR 22620 - Upper Klamath, Lower Klamath, Tule Lake, Bear Valley, and Clear Lake National Wildlife Refuges...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-29

.... In addition to outlining broad management direction on conserving wildlife and their habitats, CCPs... ensure the best possible approach to wildlife, plant, and habitat conservation, while providing for... hardstem-cattail marsh and open water, along with 30 acres of forested uplands. These habitats serve as...

Long-Term Management Strategy for Dredged Material Disposal for Naval Facilities at Pearl Harbor, Hawaii Phase III - Analysis of Alternatives and Development of an LTMS

DTIC Science & Technology

2000-03-01

are needed to restrict contaminants losses via the leachate and volatilization pathways. Plant uptake testing indicated a potential need to restrict...or control future use of the site, to amend the material with soil additives, to phytoremediate , or to provide a final surface cover of clean...initial release including toxicity and bioaccumulation, effluent, runoff, leachate , plant uptake, upland and aquatic animal uptake, and

Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum).

PubMed

Wang, Jun; Sun, Na; Deng, Ting; Zhang, Lida; Zuo, Kaijing

2014-11-06

Heat shock transcriptional factors (Hsfs) play important roles in the processes of biotic and abiotic stresses as well as in plant development. Cotton (Gossypium hirsutum, 2n=4x=(AD)2=52) is an important crop for natural fiber production. Due to continuous high temperature and intermittent drought, heat stress is becoming a handicap to improve cotton yield and lint quality. Recently, the related wild diploid species Gossypium raimondii genome (2n=2x=(D5)2=26) has been fully sequenced. In order to analyze the functions of different Hsfs at the genome-wide level, detailed characterization and analysis of the Hsf gene family in G. hirsutum is indispensable. EST assembly and genome-wide analyses were applied to clone and identify heat shock transcription factor (Hsf) genes in Upland cotton (GhHsf). Forty GhHsf genes were cloned, identified and classified into three main classes (A, B and C) according to the characteristics of their domains. Analysis of gene duplications showed that GhHsfs have occurred more frequently than reported in plant genomes such as Arabidopsis and Populus. Quantitative real-time PCR (qRT-PCR) showed that all GhHsf transcripts are expressed in most cotton plant tissues including roots, stems, leaves and developing fibers, and abundantly in developing ovules. Three expression patterns were confirmed in GhHsfs when cotton plants were exposed to high temperature for 1 h. GhHsf39 exhibited the most immediate response to heat shock. Comparative analysis of Hsfs expression differences between the wild-type and fiberless mutant suggested that Hsfs are involved in fiber development. Comparative genome analysis showed that Upland cotton D-subgenome contains 40 Hsf members, and that the whole genome of Upland cotton contains more than 80 Hsf genes due to genome duplication. The expression patterns in different tissues in response to heat shock showed that GhHsfs are important for heat stress as well as fiber development. These results provide an improved understanding of the roles of the Hsf gene family during stress responses and fiber development.

[Responses of soil nematode communities to long-term application of inorganic fertilizers in upland red soil].

PubMed

Zhang, Wei; Liu, Man-Qiang; He, Yuan-Qiu; Fan, Jian-Bo; Chen, Yan

2014-08-01

Soil biota plays a key role in ecosystem functioning of red soil. Based on the long-term inorganic fertilization field experiment (25-year) in an upland red soil, the impacts of different inorganic fertilization managements, including NPK (nitrogen, phosphorus and potassium fertilizers), NPKCaS (NPK plus gypsum fertilizers), NP (nitrogen and phosphorus fertilizers), NK (nitrogen and potassium fertilizers) and PK (phosphorus and potassium fertilizers), on the assemblage of soil nematodes during the growing period of peanut were investigated. Significant differences among the treatments were observed for total nematode abundance, trophic groups and ecological indices (P < 0.01). The total nematode abundance decreased in the order of PK > NPKCaS > NPK > NP > NK. The total number of nematodes was significantly higher in NPKCaS and PK than in NPK, NP and NK except in May. Plant parasitic nematodes were the dominant trophic group in all treatments excepted in NPKCaS, and their proportion ranged between 38% and 65%. The dominant trophic group in NPKCaS was bacterivores and represented 42.1%. Furthermore, the higher values of maturity index, Wasilewska index and structure index in NPKCaS indicated that the combined application of NPK and gypsum could remarkably relieve soil acidification, resulting in a more mature and stable soil food web structure. While, that of the NK had the opposite effect. In conclusion, our study suggested that the application of both gypsum and phosphate is an effective practice to improve soil quality. Moreover, the analysis of nematode assemblage is relevant to reflect the impact of different inorganic fertilizer on the red soil ecosystem.

Vegetation history and climate variability since 1.3kaBP reconstructed from high-resolution multiproxy analysis of mountainous peat sediment, Southeast China

NASA Astrophysics Data System (ADS)

Ma, Chunmei; Cui, Anning; Fang, Yiman; Zhao, Lin; Jia, Yulian

2017-04-01

Climate change during the last two millennia is one of the most important focuses of the "Past Global Changes" (PAGES) initiative. In this study, vegetation history and climate variability since 1.3kaBP was reconstructed from high-resolution multiproxy analysis of mountainous peat sediment from the central part of a swamp in Jiangxi Province, China. 210Pb, 137Cs and AMS14C dating were used to build the age framework on the basis of Bacon model. Pollen, Humification degree (HD), Loss-on ignition (LOI), XRF scan elements and grain-size distribution were analyzed. During 637-800 AD, the vegetation combination consists of upland herbs taxa and scattered evergreen Quercus (Quercus E). However, the pollen concentration was very low, and plant genera were seldom. Since harsh environment is not conducive to pollen storage, vegetation condition reconstructed by pollen information cannot reflect real climate change. During the Medieval Warm Period (MWP, 800-1250 AD) vegetation is abundant through the entire period, Quercus E is the building group of the forest, Pinus and Castanopsis are sporadic. Upland herbs grew up vigorously in the lower part of forest. Peat began to accumulate in the basin high terrain, where wetland herbs grew vigorous. The climate during MWP was characterized by warm and wet, inside there were obvious secondary fluctuations. Dramatic vegetation changes were recorded during the Little Ice Age LIA,1340-1870 AD). The vegetation community was primarily dominated by Castanopsis, upland land herbs thrive; wetland herbs were sparse with great fluctuations depending on changes in the humidity. Overall, during LIA, temperature pattern was featured by "four cold period and three warm period", and humidity condition was experienced a process from drought to wet. Periodic analysis of the moisture proxy (PCA 1) and temperature indicator (E/D: evergreen/deciduous tree pollen) shows cyclic fluctuations of 150 years in the temperature and precipitation, which is corresponded to historical document records. Solar activity should be the fundamental force that drove the same-phase variation of the temperature and precipitation in this region.

Arbuscular mycorrhizal fungi in two vertical-flow wetlands constructed for heavy metal-contaminated wastewater bioremediation.

PubMed

Xu, Zhouying; Wu, Yang; Jiang, Yinghe; Zhang, Xiangling; Li, Junli; Ban, Yihui

2018-05-01

Over the last three decades, the presence of arbuscular mycorrhizal fungi (AMF) in wetland habitats had been proven, and their roles played in wetland ecosystems and potential functions in wastewater bioremediation technical installations are interesting issues. To increase knowledge on the functions of AMF in the plant-based bioremediation of wastewater, we constructed two vertical-flow wetlands planting with Phragmites australis and investigated AMF distribution in plant roots and their roles played in purification of wastewater polluted by heavy metals (HMs), utilizing the Illumina sequencing technique. A total of 17 operational taxonomic units (OTUs) from 33,031 AMF sequences were obtained, with Glomus being the most dominant. P. australis living in the two vertical-flow constructed wetlands (CWs) harbored diverse AMF comparable with the AM fungal communities in upland habitats. The AMF composition profiles of CW1 (vegetated with non-inoculated plants) and CW2 (vegetated with mycorrhizal plants inoculated with Rhizophagus intraradices) were significantly different. CW1 (15 OTUs) harbored more diverse AMF than CW2 (7 OTUs); however, CW2 harbored much more OTU13 than CW1. In addition, a zipf species abundance distribution (SAD), which might due to the heavy overdominance of OTU13, was observed across AM fugal taxa in P. australis roots of the two CWs. CW1 and CW2 showed high (> 70%) removal capacity of HMs. CW2 exhibited significant higher Cd and Zn removal efficiencies than CW1 (CK) (p = 0.005 and p = 0.008, respectively). It was considered that AMF might play a role in HM removal in CWs.

Downstream Effects of Diversion Dams on Riparian Vegetation Communities in the Routt National Forest, Colorado

NASA Astrophysics Data System (ADS)

Caskey, S. T.; Wohl, E. E.; Dwire, K. A.; Merritt, D. M.; Schnackenberg, L.

2012-12-01

The relationship between riparian vegetation and changes in fluvial processes as a response to flow diversion is not well understood. Water extraction affects the hydrologic flow regime (i.e., magnitude, duration, and frequency of flows) reducing peak and base-flows, which could negatively impact riparian vegetation. Vegetation communities are temporally and spatially variable and are strongly interrelated with alluvial landforms and hydrograph variability. This research compares riparian community characteristics on diverted and undiverted pool-riffle channels and low gradient valleys to examine changes associated with flow diversion in the Routt National Forest (RNF). The RNF is the only under-appropriated area in Colorado, making future water extraction proposals likely. Many small extraction canals siphon water from small, headwater streams in the RNF, but the site-specific or cumulative effects of these diversions on riverine ecosystems have not been investigated. Systematic investigation is necessary, however, to determine whether existing flow diversions have influenced riparian communities and, if so, which communities are most sensitive to diversions. A total of 36 sites were sampled with five channel cross sections established per site, extending into the riparian zone at distance of two times the active channel width, and vegetation was sampled using the line-point intercept method. Preliminary results suggest a shift in vegetation communities from typical riparian species composition to more upland vegetation. The relative sensitivity of these responses are different depending on valley type; low- gradient, unconfined areas are less tolerant of diversion than steeper, confined reaches. Additionally, when stratified by plant assemblage, Salix abundance is significantly reduced downstream of diversion. The results of this study contribute to the collective understanding of mountain headwater riparian vegetation community response to changes in flow regimes and fluvial processes related directly to water extraction by diversion dams.

Genome-wide identification and characterization of SnRK2 gene family in cotton (Gossypium hirsutum L.).

PubMed

Liu, Zhao; Ge, Xiaoyang; Yang, Zuoren; Zhang, Chaojun; Zhao, Ge; Chen, Eryong; Liu, Ji; Zhang, Xueyan; Li, Fuguang

2017-06-12

Sucrose non-fermenting-1-related protein kinase 2 (SnRK2) is a plant-specific serine/threonine kinase family involved in the abscisic acid (ABA) signaling pathway and responds to osmotic stress. A genome-wide analysis of this protein family has been conducted previously in some plant species, but little is known about SnRK2 genes in upland cotton (Gossypium hirsutum L.). The recent release of the G. hirsutum genome sequence provides an opportunity to identify and characterize the SnRK2 kinase family in upland cotton. We identified 20 putative SnRK2 sequences in the G. hirsutum genome, designated as GhSnRK2.1 to GhSnRK2.20. All of the sequences encoded hydrophilic proteins. Phylogenetic analysis showed that the GhSnRK2 genes were classifiable into three groups. The chromosomal location and phylogenetic analysis of the cotton SnRK2 genes indicated that segmental duplication likely contributed to the diversification and evolution of the genes. The gene structure and motif composition of the cotton SnRK2 genes were analyzed. Nine exons were conserved in length among all members of the GhSnRK2 family. Although the C-terminus was divergent, seven conserved motifs were present. All GhSnRK2s genes showed expression patterns under abiotic stress based on transcriptome data. The expression profiles of five selected genes were verified in various tissues by quantitative real-time RT-PCR (qRT-PCR). Transcript levels of some family members were up-regulated in response to drought, salinity or ABA treatments, consistent with potential roles in response to abiotic stress. This study is the first comprehensive analysis of SnRK2 genes in upland cotton. Our results provide the fundamental information for the functional dissection of GhSnRK2s and vital availability for the improvement of plant stress tolerance using GhSnRK2s.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Greenberg, Cathryn H.; Levey, Douglas J.; Kwit, Charles

ABSTRACT Fleshy fruit is a key food resource for many vertebrates and may be particularly important energy source to birds during fall migration and winter. Hence, land managers should know how fruit availability varies among forest types, seasons, and years. We quantified fleshy fruit abundance monthly for 9 years (1995-2003) in 56 0.1-ha plots in 5 forest types of South Carolina's upper Coastal Plain, USA. Forest types were mature upland hardwood and bottomland hardwood forest, mature closed-canopy loblolly (Pinus taeda) and longleaf pine (P. palustris) plantation, and recent clearcut regeneration harvests planted with longleaf pine seedlings. Mean annual number ofmore » fruits and dry fruit pulp mass were highest in regeneration harvests (264,592 _ 37,444 fruits; 12,009 _ 2,392 g/ha), upland hardwoods (60,769 _ 7,667 fruits; 5,079 _ 529 g/ha), and bottomland hardwoods (65,614 _ 8,351 fruits; 4,621 _ 677 g/ha), and lowest in longleaf pine (44,104 _ 8,301 fruits; 4,102 _ 877 g/ha) and loblolly (39,532 _ 5,034 fruits; 3,261 _ 492 g/ha) plantations. Fruit production was initially high in regeneration harvests and declined with stand development and canopy closure (1995-2003). Fruit availability was highest June-September and lowest in April. More species of fruit-producing plants occurred in upland hardwoods, bottomland hardwoods, and regeneration harvests than in loblolly and longleaf pine plantations. Several species produced fruit only in 1 or 2 forest types. In sum, fruit availability varied temporally and spatially because of differences in species composition among forest types and age classes, patchy distributions of fruiting plants both within and among forest types, fruiting phenology, high inter-annual variation in fruit crop size by some dominant fruit-producing species, and the dynamic process of disturbance-adapted species colonization and decline, or recovery in recently harvested stands. Land managers could enhance fruit availability for wildlife by creating and maintaining diverse forest types and age classes. .« less

Nonlinear and Threshold Responses of Grassland Productivity and Species Composition to Increased CO2 Vary with Soil Type

NASA Astrophysics Data System (ADS)

Fay, P. A.; Jin, V.; Jackson, R. B.; Gill, R. A.; Way, D.; Polley, W.

2011-12-01

Climate change is likely to cause nonlinear responses in ecosystem function and threshold changes in species composition. Here we report aboveground net primary productivity (ANPP) responses to a continuous CO2 concentration gradient (250 to 500 μL L-1,) in experimental grassland communities on three soils differing in water holding capacity and other properties. Communities consisting of four C4 grasses, two C3 forbs, and one legume were established on a lowland clay (vertisol, n=32), an upland clay (mollisol, n=32), and an alluvial sand (alfisol, n=16). The communities were positioned in a stratified random design in the CO2 gradient for five growing seasons, and were irrigated to mimic the average growing season rainfall regime for the study site in Central Texas. ANPP increased with CO2 almost two-fold more on the upland clay and alluvial sand than on the lowland clay (p < 0.0001), because of strong linear responses to CO2 on these soils (R2 = 0.50 to 0.59, p < 0.002) compared to a saturating response to CO2 on the lowland clay (R2 = 0.48, p= 0.01). On the two more responsive soils, the mesic tallgrass Sorghastrum nutans replaced the more drought adapted mid-grass Bouteloua curtipendula at elevated CO2, while B. curtipendula largely replaced S. nutans at low CO2, especially on the upland clay. Evidence for a similar composition change was not found on the lowland clay. Thus, two soils displayed a threshold change in community composition that accounted for up to 57% of variation in ANPP for those soils. Variation in ANPP and species composition with CO2 were accompanied by linear increases in soil water content (SWC, 0 - 20 cm, volumetric), most strongly on the alluvial sand (R2 = 0.39, p < 0.009) and by weak decreases with CO2 in soil N. Structural equation models explained 34 to 52% of the variation in ANPP, and indicated that CO2 effects on ANPP on the upland clay were primarily explained by CO2 effects on species composition, and on the alluvial sand by CO2 effects on SWC. Responses to elevated CO2 in SWC, ANPP, and species composition were explained by reduced stomatal conductance and increased photosynthetic water use efficiency (WUE) in both grasses. In addition, S. nutans gained more in WUE at elevated CO2 than B. curtipendula, while B. curtipendula at elevated CO2 had lower light saturated photosynthetic capacity, quantum use efficiency, and dark respiration than S. nutans. Thus, at elevated CO2, shading by the taller S. nutans likely lowered B. curtipendula carbon assimilation and growth. We conclude that elevated CO2 strongly increased ANPP on upland clay and alluvial sand soils where there were also gains in soil moisture and threshold changes in species composition driven by physiological differences in the two dominant grass species. As a result, CO2 effects on ANPP will likely differ with soil type across the landscape.

Characterization and Functional Analysis of PEBP Family Genes in Upland Cotton (Gossypium hirsutum L.).

PubMed

Zhang, Xiaohong; Wang, Congcong; Pang, Chaoyou; Wei, Hengling; Wang, Hantao; Song, Meizhen; Fan, Shuli; Yu, Shuxun

2016-01-01

Upland cotton (Gossypium hirsutum L.) is a naturally occurring photoperiod-sensitive perennial plant species. However, sensitivity to the day length was lost during domestication. The phosphatidylethanolamine-binding protein (PEBP) gene family, of which three subclades have been identified in angiosperms, functions to promote and suppress flowering in photoperiod pathway. Recent evidence indicates that PEBP family genes play an important role in generating mobile flowering signals. We isolated homologues of the PEBP gene family in upland cotton and examined their regulation and function. Nine PEBP-like genes were cloned and phylogenetic analysis indicated the genes belonged to four subclades (FT, MFT, TFL1 and PEBP). Cotton PEBP-like genes showed distinct expression patterns in relation to different cotton genotypes, photoperiod responsive and cultivar maturity. The GhFT gene expression of a semi-wild race of upland cotton were strongly induced under short day condition, whereas the GhPEBP2 gene expression was induced under long days. We also elucidated that GhFT but not GhPEBP2 interacted with FD-like bZIP transcription factor GhFD and promote flowering under both long- and short-day conditions. The present result indicated that GhPEBP-like genes may perform different functions. This work corroborates the involvement of PEBP-like genes in photoperiod response and regulation of flowering time in different cotton genotypes, and contributes to an improved understanding of the function of PEBP-like genes in cotton.

Characterization and Functional Analysis of PEBP Family Genes in Upland Cotton (Gossypium hirsutum L.)

PubMed Central

Wang, Congcong; Pang, Chaoyou; Wei, Hengling; Wang, Hantao; Song, Meizhen; Fan, Shuli; Yu, Shuxun

2016-01-01

Upland cotton (Gossypium hirsutum L.) is a naturally occurring photoperiod-sensitive perennial plant species. However, sensitivity to the day length was lost during domestication. The phosphatidylethanolamine-binding protein (PEBP) gene family, of which three subclades have been identified in angiosperms, functions to promote and suppress flowering in photoperiod pathway. Recent evidence indicates that PEBP family genes play an important role in generating mobile flowering signals. We isolated homologues of the PEBP gene family in upland cotton and examined their regulation and function. Nine PEBP-like genes were cloned and phylogenetic analysis indicated the genes belonged to four subclades (FT, MFT, TFL1 and PEBP). Cotton PEBP-like genes showed distinct expression patterns in relation to different cotton genotypes, photoperiod responsive and cultivar maturity. The GhFT gene expression of a semi-wild race of upland cotton were strongly induced under short day condition, whereas the GhPEBP2 gene expression was induced under long days. We also elucidated that GhFT but not GhPEBP2 interacted with FD-like bZIP transcription factor GhFD and promote flowering under both long- and short-day conditions. The present result indicated that GhPEBP-like genes may perform different functions. This work corroborates the involvement of PEBP-like genes in photoperiod response and regulation of flowering time in different cotton genotypes, and contributes to an improved understanding of the function of PEBP-like genes in cotton. PMID:27552108

DOE Research Set-Aside Areas of the Savannah River Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davis, C.E.; Janecek, L.L.

1997-08-31

Designated as the first of seven National Environmental Research Parks (NERPs) by the Atomic Energy Commission (now the Department of Energy), the Savannah River Site (SRS) is an important ecological component of the Southeastern Mixed Forest Ecoregion located along the Savannah River south of Aiken, South Carolina. Integral to the Savannah River Site NERP are the DOE Research Set-Aside Areas. Scattered across the SRS, these thirty tracts of land have been set aside for ecological research and are protected from public access and most routine Site maintenance and forest management activities. Ranging in size from 8.5 acres (3.44 ha) tomore » 7,364 acres (2,980 ha), the thirty Set-Aside Areas total 14,005 acres (5,668 ha) and comprise approximately 7% of the Site`s total area. This system of Set-Aside Areas originally was established to represent the major plant communities and habitat types indigenous to the SRS (old-fields, sandhills, upland hardwood, mixed pine/hardwood, bottomland forests, swamp forests, Carolina bays, and fresh water streams and impoundments), as well as to preserve habitats for endangered, threatened, or rare plant and animal populations. Many long-term ecological studies are conducted in the Set-Asides, which also serve as control areas in evaluations of the potential impacts of SRS operations on other regions of the Site. The purpose of this document is to give an historical account of the SRS Set-Aside Program and to provide a descriptive profile of each of the Set-Aside Areas. These descriptions include a narrative for each Area, information on the plant communities and soil types found there, lists of sensitive plants and animals documented from each Area, an account of the ecological research conducted in each Area, locator and resource composition maps, and a list of Site-Use permits and publications associated with each Set-Aside.« less

Field Trials Reveal Ecotype-Specific Responses to Mycorrhizal Inoculation in Rice.

PubMed

Diedhiou, Abdala Gamby; Mbaye, Fatou Kine; Mbodj, Daouda; Faye, Mathieu Ndigue; Pignoly, Sarah; Ndoye, Ibrahima; Djaman, Koffi; Gaye, Souleymane; Kane, Aboubacry; Laplaze, Laurent; Manneh, Baboucarr; Champion, Antony

2016-01-01

The overuse of agricultural chemicals such as fertilizer and pesticides aimed at increasing crop yield results in environmental damage, particularly in the Sahelian zone where soils are fragile. Crop inoculation with beneficial soil microbes appears as a good alternative for reducing agricultural chemical needs, especially for small farmers. This, however, requires selecting optimal combinations of crop varieties and beneficial microbes tested in field conditions. In this study, we investigated the response of rice plants to inoculation with arbuscular mycorrhizal fungi (AMF) and plant growth promoting bacteria (PGPB) under screenhouse and field conditions in two consecutive seasons in Senegal. Evaluation of single and mixed inoculations with AMF and PGPB was conducted on rice (Oryza sativa) variety Sahel 202, on sterile soil under screenhouse conditions. We observed that inoculated plants, especially plants treated with AMF, grew taller, matured earlier and had higher grain yield than the non-inoculated plants. Mixed inoculation trials with two AMF strains were then conducted under irrigated field conditions with four O. sativa varieties, two O. glaberrima varieties and two interspecific NERICA varieties, belonging to 3 ecotypes (upland, irrigated, and rainfed lowland). We observed that the upland varieties had the best responses to inoculation, especially with regards to grain yield, harvest index and spikelet fertility. These results show the potential of using AMF to improve rice production with less chemical fertilizers and present new opportunities for the genetic improvement in rice to transfer the ability of forming beneficial rice-microbe associations into high yielding varieties in order to increase further rice yield potentials.

Field Trials Reveal Ecotype-Specific Responses to Mycorrhizal Inoculation in Rice

PubMed Central

Diedhiou, Abdala Gamby; Mbaye, Fatou Kine; Mbodj, Daouda; Faye, Mathieu Ndigue; Pignoly, Sarah; Ndoye, Ibrahima; Djaman, Koffi; Gaye, Souleymane; Kane, Aboubacry; Laplaze, Laurent; Manneh, Baboucarr; Champion, Antony

2016-01-01

The overuse of agricultural chemicals such as fertilizer and pesticides aimed at increasing crop yield results in environmental damage, particularly in the Sahelian zone where soils are fragile. Crop inoculation with beneficial soil microbes appears as a good alternative for reducing agricultural chemical needs, especially for small farmers. This, however, requires selecting optimal combinations of crop varieties and beneficial microbes tested in field conditions. In this study, we investigated the response of rice plants to inoculation with arbuscular mycorrhizal fungi (AMF) and plant growth promoting bacteria (PGPB) under screenhouse and field conditions in two consecutive seasons in Senegal. Evaluation of single and mixed inoculations with AMF and PGPB was conducted on rice (Oryza sativa) variety Sahel 202, on sterile soil under screenhouse conditions. We observed that inoculated plants, especially plants treated with AMF, grew taller, matured earlier and had higher grain yield than the non-inoculated plants. Mixed inoculation trials with two AMF strains were then conducted under irrigated field conditions with four O. sativa varieties, two O. glaberrima varieties and two interspecific NERICA varieties, belonging to 3 ecotypes (upland, irrigated, and rainfed lowland). We observed that the upland varieties had the best responses to inoculation, especially with regards to grain yield, harvest index and spikelet fertility. These results show the potential of using AMF to improve rice production with less chemical fertilizers and present new opportunities for the genetic improvement in rice to transfer the ability of forming beneficial rice-microbe associations into high yielding varieties in order to increase further rice yield potentials. PMID:27907023

Terrestrial-marine teleconnections in the Devonian: links between the evolution of land plants, weathering processes, and marine anoxic events

PubMed Central

Algeo, T. J.

1998-01-01

The Devonian Period was characterized by major changes in both the terrestrial biosphere, e.g. the evolution of trees and seed plants and the appearance of multi-storied forests, and in the marine biosphere, e.g. an extended biotic crisis that decimated tropical marine benthos, especially the stromatoporoid-tabulate coral reef community. Teleconnections between these terrestrial and marine events are poorly understood, but a key may lie in the role of soils as a geochemical interface between the lithosphere and atmosphere/hydrosphere, and the role of land plants in mediating weathering processes at this interface. The effectiveness of terrestrial floras in weathering was significantly enhanced as a consequence of increases in the size and geographic extent of vascular land plants during the Devonian. In this regard, the most important palaeobotanical innovations were (1) arborescence (tree stature), which increased maximum depths of root penetration and rhizoturbation, and (2) the seed habit, which freed land plants from reproductive dependence on moist lowland habitats and allowed colonization of drier upland and primary successional areas. These developments resulted in a transient intensification of pedogenesis (soil formation) and to large increases in the thickness and areal extent of soils. Enhanced chemical weathering may have led to increased riverine nutrient fluxes that promoted development of eutrophic conditions in epicontinental seaways, resulting in algal blooms, widespread bottomwater anoxia, and high sedimentary organic carbon fluxes. Long-term effects included drawdown of atmospheric pCO2 and global cooling, leading to a brief Late Devonian glaciation, which set the stage for icehouse conditions during the Permo-Carboniferous. This model provides a framework for understanding links between early land plant evolution and coeval marine anoxic and biotic events, but further testing of Devonian terrestrial-marine teleconnections is needed.

Shifts in microbial communities and soil nutrients along a fire chronosequence in Alaskan boreal forest

NASA Astrophysics Data System (ADS)

Treseder, K. K.; Mack, M. C.; Cross, A.

2002-12-01

Fires are important pathways of carbon loss from boreal forests, while microbial communities form equally important mechanisms for carbon accumulation between fires. We used a chronosequence in Alaska to examine shifts in microbial abundance and community composition in the several decades following severe fire, and then related these responses to soil characteristics in the same sites. The sites are located in upland forests near Delta Junction, Alaska, and represent stages at 3-, 15-, 45-, and over 100-yr following fire. Plant communities shift from herbaceous species in the youngest site, to deciduous shrubs and trees (e.g. Populus tremuloides and Salix) in the intermediate sites, to black spruce (Picea mariana) forest in the oldest site. Soil organic matter accumulated 2.8-fold over time. Potential mineralization was highest in the intermediate-aged sites, as was nitrification and standing pools of inorganic nitrogen. In contrast, inorganic phosphorus pools were highest immediately following fire, and then decreased nine-fold with age. As measured with BiologTM plates, bacterial diversity and abundance were greatest in the oldest sites. Plant roots in the intermediate-aged sites displayed higher colonization by ecto- and arbuscular mycorrhizal fungi than those in the youngest and oldest sites. Likewise, glomalin, a glycoprotein produced by arbuscular mycorrhizal fungi, was most abundant in the 14-yr old site. Glomalin is believed to contribute to the formation of water-stable aggregates in the soil. However, water stable aggregates were most abundant in the younger sites and did not follow the pattern of glomalin or arbuscular mycorrhizal abundance. Our results indicate that fire may maintain landscape-level diversity of microbial functional groups, and that carbon sequestration in microbial tissues (e.g. glomalin and fungal biomass) may be greatest in areas that have burned several decades earlier. Changes in soil structure may not be directly attributable to microbial activity.

Short-term response of ground-dwelling macroarthropods to shelterwood harvests in a productive Southern Appalachian upland hardwood forest

Treesearch

Jr. Westby-Gibson; Cathryn H. Greenberg; Christopher E. Moorman; T.G. Forrest; Tara L. Keyser; Dean M. Simon; Gordon S. Warburton

2017-01-01

 Macroarthropods rarely are considered in forest management decisions, despite their ecological importance as decomposers, herbivores, pollinators, predators, and nutrient cyclers, and potential of some taxa as indicators of forest condition. We used a replicated design to experimentally determine if, and how, community composition,...

Instream-Flow Analysis for the Luquillo Experimental Forest, Puerto Rico: Methods and Analysis

Treesearch

F.N. Scatena; S.L. Johnson

2001-01-01

This study develops two habitat-based approaches for evaluating instream-flow requirements within the Luquillo Experimental Forest in northeastern Puerto Rico. The analysis is restricted to instream-flow requirements in upland streams dominated by the common communities of freshwater decapods. In headwater streams, pool volume was the most consistent factor...

Niches and coexistence of ant communities in Puerto Rico

Treesearch

J.A. Torres

1984-01-01

I studied ant coexistence in adjacent areas of upland tropical forest, grassland, and agricultural land in San Lorenzo, Puerto Rico. Data on food utilization, daily activity, nesting sites, microhabitat utilization and interspecific aggression were collected. Ants' tolerance to 45 degree C was determined in the laboratory. Agricultural and grassland ants eat grain...

Red imported fire ant impacts on upland arthropods in Southern Mississippi

USGS Publications Warehouse

Epperson, D.M.; Allen, Craig R.

2010-01-01

Red imported fire ants (Solenopsis invicta) have negative impacts on a broad array of invertebrate species. We investigated the impacts of fire ants on the upland arthropod community on 20???40 ha study sites in southern Mississippi. Study sites were sampled from 19972000 before, during, and after fire ant bait treatments to reduce fire ant populations. Fire ant abundance was assessed with bait transects on all sites, and fire ant population indices were estimated on a subset of study sites. Species richness and diversity of other ant species was also assessed from bait transects. Insect biomass and diversity was determined from light trap samples. Following treatments, fire ant abundance and population indices were significantly reduced, and ant species diversity and richness were greater on treated sites. Arthropod biomass, species diversity and species richness estimated from light trap samples were negatively correlated with fire ant abundance, but there were no observable treatment effects. Solenopsis invicta has the potential to negatively impact native arthropod communities resulting in a potential loss of both species and function.

Impact of sea level rise on tide gate function.

PubMed

Walsh, Sean; Miskewitz, Robert

2013-01-01

Sea level rise resulting from climate change and land subsidence is expected to severely impact the duration and associated damage resulting from flooding events in tidal communities. These communities must continuously invest resources for the maintenance of existing structures and installation of new flood prevention infrastructure. Tide gates are a common flood prevention structure for low-lying communities in the tidal zone. Tide gates close during incoming tides to prevent inundation from downstream water propagating inland and open during outgoing tides to drain upland areas. Higher downstream mean sea level elevations reduce the effectiveness of tide gates by impacting the hydraulics of the system. This project developed a HEC-RAS and HEC-HMS model of an existing tide gate structure and its upland drainage area in the New Jersey Meadowlands to simulate the impact of rising mean sea level elevations on the tide gate's ability to prevent upstream flooding. Model predictions indicate that sea level rise will reduce the tide gate effectiveness resulting in longer lasting and deeper flood events. The results indicate that there is a critical point in the sea level elevation for this local area, beyond which flooding scenarios become dramatically worse and would have a significantly negative impact on the standard of living and ability to do business in one of the most densely populated areas of America.

Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in upland cotton (Gossypium hirsutum L.)

USDA-ARS?s Scientific Manuscript database

MIC-3-related genes of cotton (Gossypium spp.) were identified and shown to have root-specific expression, associated with pathogen defense-related function and specifically increased expression in root-knot nematode (RKN) resistant plants after nematode infection. Here we cloned and sequenced MIC-...

75 FR 19575 - Endangered and Threatened Wildlife and Plants; Revised Critical Habitat for Navarretia fossalis

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-15

... (PCE 2), and the topography and soils that support ponding during winter and spring months (PCE 3). The... and upland habitats that act as the local watershed (PCE 2), and the topography and soils that support... businesses (13 CFR 121.201). Small businesses include manufacturing and mining concerns with fewer than 500...

BAC-pool sequencing and analysis of large segments of A12 and D12 homoeologous chromosomes in Upland cotton

USDA-ARS?s Scientific Manuscript database

New and emerging next generation sequencing technologies have reduced sequencing costs, but there is room for additional approaches that can be applied to complex polyploid plant genomes. Large (about 2.5GB) and highly repetitive tetraploid genome of G. hirsutum is still cost-intensive with traditi...

75 FR 23253 - Notice of Intent To Prepare a Draft Environmental Impact Statement (EIS) for the Central Palm...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-03

... reach. The County has nourished the project area dune toes on several occasions and has planted native dune vegetation at several locations. Due to the narrow beach profile, much of this effort has been... nourishment and dune restoration through filling activities, groins, segmented submerged breakwaters, upland...

Vegetation of forested uplands in the Massabesic Experimental Forest

Treesearch

Alison C. Dibble; Catherine A. Rees; Paul E. Sendak; John C. Brissette

2004-01-01

A summary of an inventory of vascular plants in the 3,700-acre Massabesic Experimental Forest in York County, Maine. We identified about 500 species and subspecies. The most common overstory trees were eastern white pine, eastern hemlock, northern red oak, and red maple. Hemlock was the most abundant tree seedling. Shrub density was greatest for beaked hazlenut,...

Investigation of the influence of leaf thickness on canopy reflectance and physiological traits in upland and Pima cotton populations

USDA-ARS?s Scientific Manuscript database

Field-based, high-throughput phenotyping (FB-HTP) methods are becoming more prevalent in plant genetics and breeding because they enable the evaluation of large numbers of genotypes under actual field conditions. Many systems for FB-HTP quantify and characterize the reflected radiation from the crop...

Keep forage low to improve deer habitat

Treesearch

Robert M. Blair

1968-01-01

Depending on their age and how they are managed, southern pine plantations can provide sizable amounts of forage for deer. Since millions of acres of upland deer habitat are already in plantations, and millions more are slated for planting, the browse they yield will become increasingly important to southern deer herds--and to the sportsmen who are interested in seeing...

Growth response of black walnut to interplanted trees

Treesearch

Richard C. Schlesinger; Robert D. Williams

1984-01-01

Analyses of black walnut tree diameters 13 years after planting showed that interplanting autumn-olive, black locust, and European alder increased walnut tree growtb, but only at certain locations. Interplanting autumn-olive resulted in increases of 56 to 351% at four of five locations and all species resulted in doubled walnut growth on an upland site. The interaction...

Wildlife and Upland Oak Forests

Treesearch

James G. Dickson

2004-01-01

The oak forests of the eastern U.S. have always been diverse as well as dynamic; continually molded andinfluenced by a variety of natural and anthropogenic forces. These forests support thousands of species of plants, untold numbers of insects and other invertebrates, and hundreds of species of vertebrate wildlife. Because of the large number of species, I focus on...

Stripping of Soil-Applied Hexazione, Picloram, and Tebuthiuron for Loblolly Pine Site Preperation

Treesearch

James D. Haywood

1993-01-01

Herbicides were applied to prepare two upland sites for planting of loblolly pine (Pinus taeda L.) after clearcut harvesting: (1) picloram pellets, (2) hexazinone liquid, (3) a slurry of tebuthiuron soluble powder, and (4) following underplanting, a liquid formulation of picloram + 2,4-D was injected into residual hardwoods. The herbicides in...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Porter, Mark C.; Ketchum, Sarah

Noxious weeds threaten fish and wildlife habitat by contributing to increased sedimentation rates, diminishing riparian structure and function, and reducing forage quality and quantity. Wallowa Resources Wallowa Canyonlands Partnership (WCP) protects the unique ecological and economic values of the Hells Canyon grasslands along lower Joseph Creek, the lower Grande Ronde and Imnaha Rivers from invasion and degradation by noxious weeds using Integrated Weed Management techniques. Objectives of this grant were to inventory and map high priority weeds, coordinate treatment of those weeds, release and monitor bio-control agents, educate the public as to the dangers of noxious weeds and how tomore » deal with them, and restore lands to productive plant communities after treatment. With collaborative help from partners, WCP inventoried {approx} 215,000 upland acres and 52.2 miles of riparian habitat, released bio-controls at 23 sites, and educated the public through posters, weed profiles, newspaper articles, and radio advertisements. Additionally, WCP used other sources of funding to finance the treatment of 1,802 acres during the course of this grant.« less

Color infrared video mapping of upland and wetland communities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mackey, H.E. Jr.; Jensen, J.R.; Hodgson, M.E.

1987-01-01

Color infrared images were obtained using a video remote sensing system at 3000 and 5000 feet over a variety of terrestrial and wetland sites on the Savannah River Plant near Aiken, SC. The terrestrial sites ranged from secondary successional old field areas to even aged pine stands treated with varying levels of sewage sludge. The wetland sites ranged from marsh and macrophyte areas to mature cypress-tupelo swamp forests. The video data were collected in three spectral channels, 0.5-0.6 ..mu..m, 0.6-0.7 ..mu..m, and 0.7-1.1 ..mu..m at a 12.5 mm focal length. The data were converted to digital form and processed withmore » standard techniques. Comparisons of the video images were made with aircraft multispectral scanner (MSS) data collected previously from the same sites. The analyses of the video data indicated that this technique may present a low cost alternative for evaluation of vegetation and landcover types for environmental monitoring and assessment.« less

Simulating the impact of water storage on agricultural intensification and deforestation in Northern Thailand

NASA Astrophysics Data System (ADS)

Gower, D.; Zeng, Z.; Caylor, K. K.; Wood, E. F.

2017-12-01

In the Nan province of Thailand, agriculture provides a livelihood for much of the population. In the province's lowlands, farmers grow rice, typically with access to irrigation from rivers draining the surrounding mountains. In the uplands, farmers grow rainfed maize, with very little irrigation. Soil erosion from these slopes quickly leads to soil degradation, decreasing yields and forcing farmers to cut down forests to create new farmland. Over the past decades, this practice has led to extensive deforestation throughout the uplands, including within the province's national parks. In response to these issues, the local administration has proposed building upland reservoirs that will provide farmers with greater access to irrigation water and allow them to intensify agricultural production, thus decreasing the need to expand into forested areas. Concerns have been raised, however, about the benefits of such plans as water may need to be pumped uphill from the reservoirs in some cases and soil erosion will remain a problem on the steepest slopes. Such concerns must be investigated before implementation to avoid wasting money on fruitless interventions. This project addresses the above concerns using an agent-based model (ABM) to simulate agricultural production and farmer decision-making in an upland catchment of the Nan province. Here we use HydroBlocks, a field scale land surface model, to simulate soil moisture and runoff at daily-30m resolution. These hydrological variables are integrated in an ABM framework to simulate agricultural production, reservoir capacity and farmer decision-making. As part of the framework, farmers may irrigate their crops using reservoir water but must pay pumping costs that depend on the location of their fields relative to the reservoir. At the end of each growing season, farmers sell their produce and may choose to plant the same crop on the same land, plant a different crop or clear more land for more crops. These decisions change the landscape, feeding back into the HydroBlocks model in subsequent years as changes to the land cover parameters. In this way, the model predicts the long-term impacts of reservoir construction on farmer livelihoods and forest cover in the province.

Population pressure and migration: implications for upland development in the Philippines.

PubMed

Cruz, M C; Zosa-feranil, I; Goce, C L

1988-01-01

The identification of Philippine upland sites using topographic maps and photographs, the estimation of population from the 1980 census, and the verification of major migration streams was carried out. The upland population numbered 14.4 million persons according to the 1980 Census. After 1948 up to 1960 the movement of people from the Visayas regions to the frontier lands of Mindanao occurred. The 2nd wave of predominantly urbanward migration occurred after 1960, although in the early 1970s some 47,000 migrants moved to the uplands from Metropolitan Manila. The early-period migrants tended to be young males between 20 and 34 years of age. Migrants tended to be 45-54 years old in the period after 1960. The results of 3 macro-migration econometric models indicated that the availability of land in the uplands was the decisive determinant of movement, and in the long distance interregional flows, the actual length of distance traveled emerged as significant. Factors such as population and education at the areas of destination were significant for the shorter, interprovincial flows. At the municipality level land-related variables were more significant than demographic factors. The factors of distance and demographic size accounted for the large variability in migration. 3 villages in the Mount Makiling watershed were used to evaluate circumstances of movement, frequency, and mode of travel, and the socioeconomic correlates such as income, occupation, ownership status, and education. The average age of migrants was 26 years, about 1/2 of them were married, and the rest were single males in 1960-1970. According to a multiple regression model the determinants of migrant incomes were: 1) acquisition of lands of good quality, 2) access to credit for purchase of inputs, 3) increased commercialization of farming activities, 4) promotion of diversified cropping patterns, and 5) planting of perennials.

The distribution and migration of sodium from a reclaimed upland to a constructed fen peatland in a post-mined oil sands landscape.

PubMed

Kessel, Eric D; Ketcheson, Scott J; Price, Jonathan S

2018-07-15

Post-mine landscape reclamation of the Athabasca Oil Sands Region requires the use of tailings sand, an abundant mine-waste material that often contains large amounts of sodium (Na + ). Due to the mobility of Na + in groundwater and its effects on vegetation, water quality is a concern when incorporating mine waste materials, especially when attempting to construct groundwater-fed peatlands. This research is the first published account of Na + redistribution in groundwater from a constructed tailings sand upland to an adjacent constructed fen peat deposit (Nikanotee Fen). A permeable petroleum coke layer underlying the fen, extending partway into the upland, was important in directing flow and Na + beneath the peat, as designed. Initially, Na + concentration was highest in the tailings sand (average of 232mgL -1 ) and lowest in fen peat (96mgL -1 ). Precipitation-driven recharge to the upland controlled the mass flux of Na from upland to fen, which ranged from 2 to 13tons Na + per year. The mass flux was highest in the driest summer, in part from dry-period flowpaths that direct groundwater with higher concentrations of Na + into the coke layer, and in part because of the high evapotranspiration loss from the fen in dry periods, which induces upward water flow. With the estimated flux rates of 336mmyr -1 , the Na + arrival time to the fen surface was estimated to be between 4 and 11years. Over the four-year study, average Na + concentrations within the fen rooting zone increased from 87 to 200mgL -1 , and in the tailings sand decreased to 196mgL -1 . The planting of more salt-tolerant vegetation in the fen is recommended, given the potential for Na + accumulation. This study shows reclamation designs can use layered flow system to control the rate, pattern, and timing of solute interactions with surface soil systems. Crown Copyright © 2018. Published by Elsevier B.V. All rights reserved.

Modeling vegetation community responses to sea-level rise on Barrier Island systems: A case study on the Cape Canaveral Barrier Island complex, Florida, USA

PubMed Central

Foster, Tammy E.; Stolen, Eric D.; Hall, Carlton R.; Schaub, Ronald; Duncan, Brean W.; Hunt, Danny K.; Drese, John H.

2017-01-01

Society needs information about how vegetation communities in coastal regions will be impacted by hydrologic changes associated with climate change, particularly sea level rise. Due to anthropogenic influences which have significantly decreased natural coastal vegetation communities, it is important for us to understand how remaining natural communities will respond to sea level rise. The Cape Canaveral Barrier Island complex (CCBIC) on the east central coast of Florida is within one of the most biologically diverse estuarine systems in North America and has the largest number of threatened and endangered species on federal property in the contiguous United States. The high level of biodiversity is susceptible to sea level rise. Our objective was to model how vegetation communities along a gradient ranging from hydric to upland xeric on CCBIC will respond to three sea level rise scenarios (0.2 m, 0.4 m, and 1.2 m). We used a probabilistic model of the current relationship between elevation and vegetation community to determine the impact sea level rise would have on these communities. Our model correctly predicted the current proportions of vegetation communities on CCBIC based on elevation. Under all sea level rise scenarios the model predicted decreases in mesic and xeric communities, with the greatest losses occurring in the most xeric communities. Increases in total area of salt marsh were predicted with a 0.2 and 0.4 m rise in sea level. With a 1.2 m rise in sea level approximately half of CCBIC’s land area was predicted to transition to open water. On the remaining land, the proportions of most of the vegetation communities were predicted to remain similar to that of current proportions, but there was a decrease in proportion of the most xeric community (oak scrub) and an increase in the most hydric community (salt marsh). Our approach provides a first approximation of the impacts of sea level rise on terrestrial vegetation communities, including important xeric upland communities, as a foundation for management decisions and future modeling. PMID:28796807

Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest.

PubMed

Taş, Neslihan; Prestat, Emmanuel; McFarland, Jack W; Wickland, Kimberley P; Knight, Rob; Berhe, Asmeret Asefaw; Jorgenson, Torre; Waldrop, Mark P; Jansson, Janet K

2014-09-01

Permafrost soils are large reservoirs of potentially labile carbon (C). Understanding the dynamics of C release from these soils requires us to account for the impact of wildfires, which are increasing in frequency as the climate changes. Boreal wildfires contribute to global emission of greenhouse gases (GHG-CO2, CH4 and N2O) and indirectly result in the thawing of near-surface permafrost. In this study, we aimed to define the impact of fire on soil microbial communities and metabolic potential for GHG fluxes in samples collected up to 1 m depth from an upland black spruce forest near Nome Creek, Alaska. We measured geochemistry, GHG fluxes, potential soil enzyme activities and microbial community structure via 16SrRNA gene and metagenome sequencing. We found that soil moisture, C content and the potential for respiration were reduced by fire, as were microbial community diversity and metabolic potential. There were shifts in dominance of several microbial community members, including a higher abundance of candidate phylum AD3 after fire. The metagenome data showed that fire had a pervasive impact on genes involved in carbohydrate metabolism, methanogenesis and the nitrogen cycle. Although fire resulted in an immediate release of CO2 from surface soils, our results suggest that the potential for emission of GHG was ultimately reduced at all soil depths over the longer term. Because of the size of the permafrost C reservoir, these results are crucial for understanding whether fire produces a positive or negative feedback loop contributing to the global C cycle.

Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest

PubMed Central

Taş, Neslihan; Prestat, Emmanuel; McFarland, Jack W; Wickland, Kimberley P; Knight, Rob; Berhe, Asmeret Asefaw; Jorgenson, Torre; Waldrop, Mark P; Jansson, Janet K

2014-01-01

Permafrost soils are large reservoirs of potentially labile carbon (C). Understanding the dynamics of C release from these soils requires us to account for the impact of wildfires, which are increasing in frequency as the climate changes. Boreal wildfires contribute to global emission of greenhouse gases (GHG—CO2, CH4 and N2O) and indirectly result in the thawing of near-surface permafrost. In this study, we aimed to define the impact of fire on soil microbial communities and metabolic potential for GHG fluxes in samples collected up to 1 m depth from an upland black spruce forest near Nome Creek, Alaska. We measured geochemistry, GHG fluxes, potential soil enzyme activities and microbial community structure via 16SrRNA gene and metagenome sequencing. We found that soil moisture, C content and the potential for respiration were reduced by fire, as were microbial community diversity and metabolic potential. There were shifts in dominance of several microbial community members, including a higher abundance of candidate phylum AD3 after fire. The metagenome data showed that fire had a pervasive impact on genes involved in carbohydrate metabolism, methanogenesis and the nitrogen cycle. Although fire resulted in an immediate release of CO2 from surface soils, our results suggest that the potential for emission of GHG was ultimately reduced at all soil depths over the longer term. Because of the size of the permafrost C reservoir, these results are crucial for understanding whether fire produces a positive or negative feedback loop contributing to the global C cycle. PMID:24722629

Improvement of efficient in vitro regeneration potential of mature callus induced from Malaysian upland rice seed (Oryza sativa cv. Panderas).

PubMed

Mohd Din, Abd Rahman Jabir; Iliyas Ahmad, Fauziah; Wagiran, Alina; Abd Samad, Azman; Rahmat, Zaidah; Sarmidi, Mohamad Roji

2016-01-01

A new and rapid protocol for optimum callus production and complete plant regeneration has been assessed in Malaysian upland rice (Oryza sativa) cv. Panderas. The effect of plant growth regulator (PGR) on the regeneration frequency of Malaysian upland rice (cv. Panderas) was investigated. Mature seeds were used as a starting material for callus induction experiment using various concentrations of 2,4-D and NAA. Optimal callus induction frequency at 90% was obtained on MS media containing 2,4-D (3 mg L(-1)) and NAA (2 mg L(-1)) after 6 weeks while no significant difference was seen on tryptophan and glutamine parameters. Embryogenic callus was recorded as compact, globular and light yellowish in color. The embryogenic callus morphology was further confirmed with scanning electron microscopy (SEM) analysis. For regeneration, induced calli were treated with various concentrations of Kin (0.5-1.5 mg L(-1)), BAP, NAA and 0.5 mg L(-1) of TDZ. The result showed that the maximum regeneration frequency (100%) was achieved on MS medium containing BAP (0.5 mg L(-1)), Kin (1.5 mg L(-1)), NAA (0.5 mg L(-1)) and TDZ (0.5 mg L(-1)) within four weeks. Developed shoots were successfully rooted on half strength MS free hormone medium and later transferred into a pot containing soil for acclimatization. This cutting-edge finding is unique over the other existing publishable data due to the good regeneration response by producing a large number of shoots.

Improvement of efficient in vitro regeneration potential of mature callus induced from Malaysian upland rice seed (Oryza sativa cv. Panderas)

PubMed Central

Mohd Din, Abd Rahman Jabir; Iliyas Ahmad, Fauziah; Wagiran, Alina; Abd Samad, Azman; Rahmat, Zaidah; Sarmidi, Mohamad Roji

2015-01-01

A new and rapid protocol for optimum callus production and complete plant regeneration has been assessed in Malaysian upland rice (Oryza sativa) cv. Panderas. The effect of plant growth regulator (PGR) on the regeneration frequency of Malaysian upland rice (cv. Panderas) was investigated. Mature seeds were used as a starting material for callus induction experiment using various concentrations of 2,4-D and NAA. Optimal callus induction frequency at 90% was obtained on MS media containing 2,4-D (3 mg L−1) and NAA (2 mg L−1) after 6 weeks while no significant difference was seen on tryptophan and glutamine parameters. Embryogenic callus was recorded as compact, globular and light yellowish in color. The embryogenic callus morphology was further confirmed with scanning electron microscopy (SEM) analysis. For regeneration, induced calli were treated with various concentrations of Kin (0.5–1.5 mg L−1), BAP, NAA and 0.5 mg L−1 of TDZ. The result showed that the maximum regeneration frequency (100%) was achieved on MS medium containing BAP (0.5 mg L−1), Kin (1.5 mg L−1), NAA (0.5 mg L−1) and TDZ (0.5 mg L−1) within four weeks. Developed shoots were successfully rooted on half strength MS free hormone medium and later transferred into a pot containing soil for acclimatization. This cutting-edge finding is unique over the other existing publishable data due to the good regeneration response by producing a large number of shoots. PMID:26858569

Understory response to varying fire frequencies after 20 years of prescribed burning in an upland oak forest

USGS Publications Warehouse

Burton, J.A.; Hallgren, S.W.; Fuhlendorf, S.D.; Leslie, David M.

2011-01-01

Ecosystems in the eastern United States that were shaped by fire over thousands of years of anthropogenic burning recently have been subjected to fire suppression resulting in significant changes in vegetation composition and structure and encroachment by invasive species. Renewed interest in use of fire to manage such ecosystems will require knowledge of effects of fire regime on vegetation. We studied the effects of one aspect of the fire regime, fire frequency, on biomass, cover and diversity of understory vegetation in upland oak forests prescribe-burned for 20 years at different frequencies ranging from zero to five fires per decade. Overstory canopy closure ranged from 88 to 96% and was not affected by fire frequency indicating high tolerance of large trees for even the most frequent burning. Understory species richness and cover was dominated by woody reproduction followed in descending order by forbs, C3 graminoids, C4 grasses, and legumes. Woody plant understory cover did not change with fire frequency and increased 30% from one to three years after a burn. Both forbs and C3 graminoids showed a linear increase in species richness and cover as fire frequency increased. In contrast, C4 grasses and legumes did not show a response to fire frequency. The reduction of litter by fire may have encouraged regeneration of herbaceous plants and helped explain the positive response of forbs and C3 graminoids to increasing fire frequency. Our results showed that herbaceous biomass, cover, and diversity can be managed with long-term prescribed fire under the closed canopy of upland oak forests. ?? 2011 Springer Science+Business Media B.V.

Polyphasic characterization of bacteria obtained from upland rice cultivated in Cerrado soil.

PubMed

Braga, Lívia Fabiana; Oliveira, Fênix Araújo de; Couto, Eva Aparecida Prado do; Santos, Karina Freire d'Eça Nogueira; Ferreira, Enderson Petrônio de Brito; Martin-Didonet, Claudia Cristina Garcia

This work aimed to characterize 20 isolates obtained from upland rice plants, based on phenotypic (morphology, enzymatic activity, inorganic phosphate solubilization, carbon source use, antagonism), genotypic assays (16S rRNA sequencing) and plant growth promotion. Results showed a great morphological, metabolic and genetic variability among bacterial isolates. All isolates showed positive activity for catalase and protease enzymes and, 90% of the isolates showed positive activity for amylase, catalase and, nitrogenase. All isolates were able to metabolize sucrose and malic acid in contrast with mannitol, which was metabolized only by one isolate. For the other carbon sources, we observed a great variability in its use by the isolates. Most isolates showed antibiosis against Rhizoctonia solani (75%) and Sclerotinia sclerotiorum (55%) and, 50% of them showed antibiosis against both pathogens. Six isolates showed simultaneous ability of antibiosis, inorganic phosphate solubilization and protease activity. Based on phylogenetic analysis of the 16S rRNA gene all the isolates belong to Bacillus genus. Under greenhouse conditions, two isolates (S4 and S22) improved to about 24%, 25%, 30% and 31% the Total N, leaf area, shoot dry weight and root dry weight, respectively, of rice plants, indicating that they should be tested for this ability under field conditions. Copyright © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

Spruce Budworm (Choristoneura fumiferana) Performance in Relation to Foliar Chemistry of its Host Plants

Treesearch

William John.  Mattson

1983-01-01

Spruce budworm growth was best on balsam fir, poorest on lowland black spruce, and intermediate on upland white and black spruce. Growth was consistently, positively linked to foliar N and negatively linked to Fe, K, and select terpenes. Survival rates were not strongly, nor consistently linked to any of the measured foliar chemical traits.

Changes in fine root dynamics and distribution along a chronosequence of upland oak-hickory forests

Treesearch

Travis W. Idol; Phillip E. Pope; Felix, Jr. Ponder

1997-01-01

Central Hardwood forests regenerate rapidly following a major disturbance like a clear-cut. The subsequent aboveground growth and development of the resulting stands have been well-documented for these forests. However, the belowground components, specifically the dynamics of fine roots, are not well understood. Fine roots are the main vectors through which plants...

Private timberlands: growing demands, shrinking land base.

Treesearch

Ralph Alig; John Mills; Brett Butler

2002-01-01

By 2050, US timberland area is projected to be about 3 percent smaller than today due to increasing demands for urban and related land uses from another 126 million people. An increasing area of southern planted pine will be accompanied by a reduction in the area of upland hardwoods. Hardwoods will continue to dominate the forested landscape in the South. Plantation...

A barrage of beetles: controlling leafy spurge through beetle inundation

Treesearch

Paul Meznarich; Rob Progar

2012-01-01

Leafy spurge is an invasive weed that has appeared along streams throughout much of the country. Riparian ecosystems are particularly sensitive areas that can be threatened by nonnative invasive species. These areas also can be damaged by herbicides commonly used in uplands to control invasive plants. In a collaborative effort by the U.S. Forest Service, Bureau of Land...

The impact of strip clearcutting on red oak seedling development

Treesearch

Jamie L. Schuler; Michael Boyce; Gary W. Miller

2017-01-01

A mature upland yellow-poplar/red oak stand was harvested using an alternating strip clearcut method. Red oak seedlings were planted across a light gradient between the cut and residual strips to assess the potential ability of the residual strips to foster the development of competitive oak seedlings over time. After one growing season, no differences in seedling...

Incidence and impact of damage and mortality trends to South Carolina's timber, 1986

Treesearch

Robert L. Anderson; Noel D. Cost; William H. Hoffard; Clair Redmond; Joe Glover

1990-01-01

On South Carolina's 12.2 million acres of timberland, 186 million cubic feet of timber were lost annually to mortality and cull between 1978 and 1986. The estimated annual monetary loss was $97.3 million. Among broad management types. natural pine, planted pine, upland hardwoods, and bottomland hardwoods - the greatest loss occurred in natural pine stands. About...

7 CFR 1427.101 - Eligible upland cotton.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 10 2012-01-01 2012-01-01 false Eligible upland cotton. 1427.101 Section 1427.101... OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.101 Eligible upland cotton. (a) For purposes of this subpart, eligible upland...

7 CFR 1427.101 - Eligible upland cotton.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 10 2014-01-01 2014-01-01 false Eligible upland cotton. 1427.101 Section 1427.101... OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.101 Eligible upland cotton. (a) For purposes of this subpart, eligible upland...

7 CFR 1427.101 - Eligible upland cotton.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 10 2011-01-01 2011-01-01 false Eligible upland cotton. 1427.101 Section 1427.101... OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.101 Eligible upland cotton. (a) For purposes of this subpart, eligible upland...

7 CFR 1427.101 - Eligible upland cotton.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 10 2013-01-01 2013-01-01 false Eligible upland cotton. 1427.101 Section 1427.101... OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.101 Eligible upland cotton. (a) For purposes of this subpart, eligible upland...

7 CFR 1427.101 - Eligible upland cotton.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 10 2010-01-01 2010-01-01 false Eligible upland cotton. 1427.101 Section 1427.101... OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.101 Eligible upland cotton. (a) For purposes of this subpart, eligible upland...

Two decades of climate driving the dynamics of functional and taxonomic diversity of a tropical small mammal community in western Mexico.

PubMed

Mason-Romo, Edgard David; Farías, Ariel A; Ceballos, Gerardo

2017-01-01

Understanding the effects of global climate disruption on biodiversity is important to future conservation efforts. While taxonomic diversity is widely studied, functional diversity of plants, and recently animals, is receiving increasing attention. Most studies of mammals are short-term, focus on temperate habitats, and rely on traits described in the literature rather than generating traits from observations. Unlike previous studies, this long-term field study assessed the factors driving the functional and taxonomic diversity of small-mammal assemblages in dry tropical forests using both traits recorded from literature and a demographic database. We assessed the drivers (abundance and biomass, temperature and rainfall) of taxonomic richness and functional diversity for two rain-driven seasons in two adjacent but distinct forests-upland and lowland (arroyo or riparian) forests. Our analysis found that rainfall, both seasonal and atypical, was the primary factor driving functional and taxonomic diversity of small-mammal assemblages. Functional responses differed between the two types of forests, however, with effects being stronger in the harsher conditions of the upland forests than in the less severe conditions prevailing in the arroyo (riparian) forest. The latter also supports a richer, more diverse, and more stable small-mammal assemblage. These findings highlight the importance of climate to tropical biological diversity, as extreme climate events (hurricanes, droughts and floods) and disruption of rainfall patterns were shown to decrease biodiversity. They also support the need to preserve these habitats, as their high taxonomic diversity and functional redundancy makes them resilient against global climate disruption and local extreme events. Tropical dry forests constitute a potential reservoir for biodiversity and the ecosystem services they provide. Unfortunately, these forests are among the most endangered terrestrial ecosystems because of deforestation and the likely impacts of global climate disruption.

The flora of Oktibbeha County, Mississippi

USGS Publications Warehouse

Leidolf, A.; McDaniel, S.; Nuttle, T.

2002-01-01

We surveyed the flora of Oktibbeha County, Mississippi, U.S.A., from February 1994 to 1996. Occupying 118 square kilometers in east-central Mississippi, Oktibbeha County lies among 3 physiographic regions that include, from west to east, Interior Flatwoods, Pontotoc Ridge, and Black Prairie. Accordingly, the county harbors a diverse flora. Based on field work, as well as an extensive review of published literature and herbarium records at IBE and MISSA, we recorded a total of 1,148 taxa (1,125 species, 7 hybrids, 16 infraspecific taxa) belonging to 514 genera in 160 families, over 85% of all taxa documented were native. Compared to 3 other counties in east-central Mississippi, Oktibbeha County has the second largest recorded flora. The number of state-listed (endangered, threatened, or of special concern) taxa (67) documented in this survey far exceeds that reported from any other county in the region. Three introduced species, Ilex cornuta Lindl. & Paxton, Mahonia bealei (Fortune) Carrie??re, and Nandina domestica Thunb., are reported in a naturalized state for the first time from Mississippi. We also describe 16 different plant communities belonging to 5 broad habitat categories: bottomland forests, upland forests and prairies, aquatic habitats, seepage areas, and human-influenced habitats. A detailed description of the vegetation associated with each of these communities is provided.

Ecological Responses to Five Years of Experimental Nitrogen Application in an Upland Jack-pine Stand

NASA Astrophysics Data System (ADS)

Melaschenko, N.; Berryman, S.; Straker, J.; Berg, K.; McDonough, A.; Watmough, S. A.

2016-12-01

A five-year experimental study was conducted to evaluate the response of an upland jack-pine (Pinus banksiana) forest to elevated levels of nitrogen (N) deposition in Northern Alberta. N deposition in the region is expected to increase with industrial expansion of oil sands activity, and there is regional interest to set N critical loads for sensitive ecosystems. In this study, N was applied as NH4NO3 above a jack-pine canopy via helicopter, annually for five years (2010-2015) at dosages equivalent to 5, 10, 15, 20 and 25 kg N ha-1 yr-1. Approximately 35% of the applied N was retained in the canopy while 65% reached understory vegetation dominated by lichens and mosses. We measured a significant increase in tissue N concentrations of common ground lichens (Cladonia mitis and C. stellaris) and ground moss (Pleurozium schreberi) as well as epiphytic lichens (Hypogymnia physodes and Evernia mesomorpha). On an annual basis, the applied N was primarily captured in the lichen and moss understory, dominated by C. mitis. In the highest treatments, N concentrations in C. mitis were 1.5-2.5 times greater than pre-treatment values. Peak N concentrations in the ground moss Pleurozium schreberi (1.4%) indicate that a threshold of N saturation was reached by year 3. We observed no changes in community composition of vascular and non-vascular plants, or changes in vascular plant tissue N. Chlorophyll levels in C. mitis increased with N treatment, but there was no indication of toxicity or changes to decomposition and growth. After five years of N application, only Peltigera polydactylon, a ground cyanolichen, appeared to be negatively impacted where the thalli showed necrosis at deposition loads >10kg N ha-1 yr-1. No changes to biomass or N ecosystem processes were observed. Based on these observations, we provide evidence that the first adverse ecological effects of N deposition in jack-pine stands occurred at deposition rates of 10 kg N ha-1 yr-1.

Elevated temperature is more effective than elevated [CO2 ] in exposing genotypic variation in Telopea speciosissima growth plasticity: implications for woody plant populations under climate change.

PubMed

Huang, Guomin; Rymer, Paul D; Duan, Honglang; Smith, Renee A; Tissue, David T

2015-10-01

Intraspecific variation in phenotypic plasticity is a critical determinant of plant species capacity to cope with climate change. A long-standing hypothesis states that greater levels of environmental variability will select for genotypes with greater phenotypic plasticity. However, few studies have examined how genotypes of woody species originating from contrasting environments respond to multiple climate change factors. Here, we investigated the main and interactive effects of elevated [CO2 ] (CE ) and elevated temperature (TE ) on growth and physiology of Coastal (warmer, less variable temperature environment) and Upland (cooler, more variable temperature environment) genotypes of an Australian woody species Telopea speciosissima. Both genotypes were positively responsive to CE (35% and 29% increase in whole-plant dry mass and leaf area, respectively), but only the Coastal genotype exhibited positive growth responses to TE . We found that the Coastal genotype exhibited greater growth response to TE (47% and 85% increase in whole-plant dry mass and leaf area, respectively) when compared with the Upland genotype (no change in dry mass or leaf area). No intraspecific variation in physiological plasticity was detected under CE or TE , and the interactive effects of CE and TE on intraspecific variation in phenotypic plasticity were also largely absent. Overall, TE was a more effective climate factor than CE in exposing genotypic variation in our woody species. Our results contradict the paradigm that genotypes from more variable climates will exhibit greater phenotypic plasticity in future climate regimes. © 2015 John Wiley & Sons Ltd.

Late archaic settlement systems in the northern Rio Grande

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vierra, Bradley J.

2003-01-01

Last year at these meetings I proposed a possible seasonal transhumance pattern for the Late Archaic in the northern Rio Grande region. This pattern involved the movement of groups from the lowland juniper-savanna grasslands in the early summer, to the upland ponderosa pindmixed conifer forests in the mid to late summer, and then back down to the piiion-juniper woodlands during the fall. The Rio Grande Valley was also used for winter habitation sites. Following on this research, I take the next step by studying the inter-assemblage variability represented in a sample of open-air sites located within each of these vegetationmore » communities. The results indicate that there are significant differences in reduction tactics represented between valley habitation vs., upland campsites, and that these site sites are linked together by obsidian procurement patterns.« less

Hydrological change: reaping prosperity and pain in Australia

NASA Astrophysics Data System (ADS)

Dunin, F. X.; Smith, C. J.; Denmead, O. T.

2007-01-01

The adage: “There is no such thing as a free lunch”, is relevant to land-use hydrology in Australia. Changes in land use to achieve greater productivity of food and fibre may have an adverse effect on the water balance and hence on the natural resource capital of a catchment. An altered regime of catchment outflow accompanies those land-use changes which, together with land degradation, impairs available water resources in quantity and quality and threatens enterprise sustainability, notwithstanding the initial improvement in productivity. Central to any hydrological change is an altered pattern of seasonal and annual water use by vegetation that has become modified in function with an amended transpiration fraction of daily evapotranspiration. In Australia, since measurement of evapotranspiration became feasible, the hydrological consequences of changes in land use have been determined, allowing the benefits in terms of plant productivity achieved through enhanced water use efficiency to be weighed against changed catchment outflows, diminished in either quantity or quality. Four case studies are presented as examples of ecological and hydrological changes: two deal with the upland forest environment and two with arable lowlands. In an upland eucalypt forest, following wildfire with subsequent regeneration from natural seedling establishment, substantial reduction in water yield occurred throughout a 50-year period of succession in the even-aged stand. In comparison, the effect of converting eucalypt forest to pine plantations was less detrimental to the yield of water from the catchments, with substantial growth increases over 30 years. In the lowlands, agricultural productivity, both as annual pasture and as crop, far exceeds that of natural perennial grassland and woodland. This increase in productivity comes not so much from any change to the yield of total water outflow but at the expense of water quality, compromised with increased material transport in suspension and solution resulting from accelerated erosion in association with outbreaks of soil salinity and acidity. The present study is aimed at optimising management to give plant production outcomes that ensure environmental protection through resource conservation. In the uplands, harvesting of water is the dominant consideration so that conservative management with limited plant productivity is sought. In the lowlands, the objective is to devise novel ecosystems with profitable plant production that exercises due control on outflow in maintaining the chemical and physical integrity of the edaphic environment.

Nest-site selection and success of mottled ducks on agricultural lands in southwest Louisiana

USGS Publications Warehouse

Durham, R.S.; Afton, A.D.

2003-01-01

Listing of the mottled duck (Anas fulvigula maculosa) as a priority species in the Gulf Coast Joint Venture of the North American Waterfowl Management Plan, coupled with recent declines of rice (Oryza sativa) acreage, led us to investigate the nesting ecology of this species on agricultural lands in southwest Louisiana. We examined nest-site selection at macro- and microhabitat levels, nest success, causes of nest failures, and habitat features influencing nest success. We found that female mottled ducks preferred to nest in permanent pastures with knolls (53% of nests) and idle fields (22% of nests). Vegetation height was greater at nests than at random points within the same macrohabitat patch. Successful nests were associated with greater numbers of plant species, located farther from water, and associated with higher vegetation density values than were unsuccessful nests. We determined that mammalian predators caused most nest failures (77% of 52 unsuccessful nests). Our results suggest that nest success of mottled ducks on agricultural lands in southwest Louisiana could be improved by 1) locating large permanent pastures and idle fields near rice fields and other available wetlands, 2) managing plant communities in these upland areas to favor dense stands of perennial bunch grasses, tall composites, dewberry (Rubus trivialis), and other native grasses and forbs, and 3) managing cattle-stocking rates and the duration and timing of grazing to promote tall, dense stands of these plant taxa during the nesting season (March-June).

Precontact vegetation and soil nutrient status in the shadow of Kohala Volcano, Hawaii

NASA Astrophysics Data System (ADS)

Chadwick, Oliver A.; Kelly, Eugene F.; Hotchkiss, Sara C.; Vitousek, Peter M.

2007-09-01

Humans colonized Hawaii about 1200 years ago and have progressively modified vegetation, particularly in mesic to dry tropical forests. We use δ 13C to evaluate the contribution of C 3 and C 4 plants to deep soil organic matter to reconstruct pre-human contact vegetation patterns along a wet to dry climate transect on Kohala Mountain, Hawaii Island. Precontact vegetation assemblages fall into three distinct zones: a wet C 3 dominated closed canopy forest where annual rainfall is > 2000 mm, a dry C 4 dominated grassland with annual rainfall < 500 mm, and a broad transition zone between these communities characterized by either C 3 trees with higher water-use efficiency than the rainforest trees or C 3 trees with a small amount of C 4 grasses intermixed. The likelihood of C 4 grass understory decreases with increasing rainfall. We show that the total concentration of rock-derived nutrients in the < 2-mm soil fraction differs in each of these vegetation zones. Nutrient losses are driven by leaching at high rainfall and by plant cycling and wind erosion at low rainfall. By contrast, nutrients are best preserved in surface soils of the intermediate rainfall zone, where rainfall supports abundant plant growth but does not contribute large amounts of water in excess of evapotranspiration. Polynesian farmers exploited these naturally enriched soils as they intensified their upland agricultural systems during the last three centuries before European contact.

Relationship of some upland rice genotype after gamma irradiation

NASA Astrophysics Data System (ADS)

Suliartini, N. W. S.; Wijayanto, T.; Madiki, A.; Boer, D.; Muhidin; Juniawan

2018-02-01

The objective of the research was to group local upland rice genotypes after being treated with gamma irradiation. The research materials were upland rice genotypes resulted from mutation of the second generation and two parents: Pae Loilo (K3D0) and Pae Pongasi (K2D0) Cultivars. The research was conducted at the Indonesian Sweetener and Fiber Crops Research Institute, Malang Regency, and used the augmented design method. Research data were analyzed with R Program. Eight hundred and seventy one genotypes were selected with the selection criteria were based on yields on the average parents added 1.5 standard deviation. Based on the selection, eighty genotypes were analyzed with cluster analyses. Nine observation variables were used to develop cluster dendrogram using average linked method. Genetic distance was measured by euclidean distance. The results of cluster dendrogram showed that tested genotypes were divided into eight groups. Group 1, 2, 7, and 8 each had one genotype, group 3 and 6 each had two genotypes, group 4 had 25 genotypes, and group 5 had 51 genotypes. Check genotypes formed a separate group. Group 6 had the highest yield per plant of 126.11 gram, followed by groups 5 and 4 of 97.63 and 94.08 gram, respectively.

Premières datations directes de défrichements protohistoriques sur les chaumes secondaires des Vosges (Rossberg, Haut-Rhin). Approche pédoanthracologique

NASA Astrophysics Data System (ADS)

Schwartz, Dominique; Thinon, Michel; Goepp, Stéphanie; Schmitt, Christian; Casner, Julien; Rosique, Thierry; Wuscher, Patrice; Alexandre, Anne; Dambrine, Étienne; Martin, Charly; Guillet, Bernard

2005-10-01

The age of the upland grasslands of the Vosges Mountains is still not well known. On the basis of the study of historical archives, it was assumed that the forest clearings, which led to grasslands establishment, were done by the monks who colonized the Vosges valleys between the 7th and the 8th centuries. Our pedo-anthracological study raises questions about this hypothesis, based on the discovery of Juniperus communis charcoal in soils from the 2nd or 1st century BC. This plant specie is characteristic of grasslands developing into fallows. The occurrence of Juniperus communis charcoals indicates that upland grasslands did exist at least 800 years earlier than it was expected before our study, i.e. at least since the late Iron Age. To cite this article: D. Schwartz et al., C. R. Geoscience 337 (2005).

Tropical forest soil microbial communities couple iron and carbon biogeochemistry

Treesearch

Eric A. Dubinsky; Whendee L. Silver; Mary K. Firestone

2010-01-01

We report that iron-reducing bacteria are primary mediators of anaerobic carbon oxidation in upland tropical soils spanning a rainfall gradient (3500–5000 mm/yr) in northeast Puerto Rico. The abundant rainfall and high net primary productivity of these tropical forests provide optimal soil habitat for iron-reducing and iron-oxidizing bacteria. Spatially and temporally...

Harvest-associated disturbance in upland Ozark forests of the Missouri Ozark Forest Ecosystem Project

Treesearch

Johann N. Bruhn; James J. Wetteroff; Jeanne D. Mihail; Randy G. Jensen; James B. Pickens

2002-01-01

The Missouri Ozark Forest Ecosystem Project (MOFEP) is a long-term, multidisciplinary, landscape-based research program studying effects of even-aged (EAM), uneven-aged (UAM), and no-harvest (NHM) management on forest communities. The first MOFEP timber harvests occurred from May through November 1996. Harvest- related disturbance occurred on 69 of 180 permanent 0.2-ha...

Use of Tree Species by Summer Birds in Ozark Upland Oak-Hickory Forest

Treesearch

C. Joan Patterson; Douglas A. James

2004-01-01

Impacts of oak-boring beetles in the Ozark region could produce major changes in forest communities of northwestern Arkansas resulting in loss of oaks replaced by other tree species. Because the extensive Ozark forests are a major source of surplus birds, alterations of forest structure producing changes in foraging opportunities for birds could have serious...

Final Programmatic Environmental Impact Statement, Lake Darling Flood Control Project, Souris River, North Dakota and Final Feature Environmental Impact Statement, Velva Flood Control, Velva, North Dakota.

DTIC Science & Technology

1983-11-01

plant species found in the floodplain forest are elm, green ash, box elder, bur oak, willow, cottonwood, hawthorn, chokecherry , dogwood, wolfberry, and...understory of grape, sorrel, meadow rue, poison ivy, rose, and cocklebur. These species plus chokecherry and black currant grow in some of the upland

A collaborative program to provide native plant materials for the Great Basin

Treesearch

Nancy Shaw; Mike Pellant; Matthew Fisk; Erin Denney

2012-01-01

The Great Basin as defined on a floristic basis includes the hydrographic Great Basin plus the Owyhee Uplands and Snake River Plain of southern Idaho (Fig. 1). The region encompasses about 60 million ha, of which more than two-thirds are publicly owned. Vegetation ranges from salt desert and sagebrush shrublands in the basins to conifer forests in the more than 200...

Phase 2 Site Investigations Report. Volume 2 of 3: site-Specific Investigations

DTIC Science & Technology

1994-09-01

overstory regeneration. In addition, poison ivy and Virginia creeper are common vines. Various asters, grasses, and goldenrods comprise the sparsely...and silky dogwood. Poison ivy dominates the ground cover. In general these areas combine several distinct upland habitats which support wildlife...hemlock, speckled alder, red maple saplings and a variety of herbaceous and emergent plants, such as water lilies, cattails, jewelweed , sensitive fern

Host specificity testing and examination for plant pathogens reveals that the gall-forming psyllid, Calophya latiforceps (Hemiptera: Calophyidae), is safe to release for biological control of Schinus terebinthifolia

USDA-ARS?s Scientific Manuscript database

Brazilian peppertree (Schinus terebinthifolia Raddi) is one of the worst upland exotic weeds in Florida. Foreign exploration for natural enemies led to the discovery of a pit-galling psyllid, Calophya latiforceps (Hemiptera: Calophyidae), in the state of Bahia, Brazil in 2010. Crawlers of C. latifor...

Steam, solarization, and tons of prevention: the San Francisco Public Utilities Commission's fight to contain Phytophthoras in San Francisco Bay area restoration sites

Treesearch

Greg Lyman; Jessica Appel; Mia Ingolia; Ellen Natesan; Joe Ortiz

2017-01-01

To compensate for unavoidable impacts associated with critical water infrastructure capital improvement projects, the San Francisco Public Utilities Commission (SFPUC) restored over 2,050 acres of riparian, wetland, and upland habitat on watershed lands in Alameda, Santa Clara, and San Mateo Counties. Despite strict bio-sanitation protocols, plant pathogens (...

Pest resistance and agronomic performance of Upland cotton lines following eight generations of introgression of the BNL3279_105 DNA marker from Gossypium barbadense GB713

USDA-ARS?s Scientific Manuscript database

The BNL3279 primers give unique DNA markers that are closely linked with resistance to reniform nematodes in Gossypium longicalx, Gossypium barbadense GB713, and Gossypium aridum. Plants that had been selected and advanced based on reniform nematode bioassays for each of five or six generations of ...

Thirteen Year Loblolly Pine Growth Following Machine Application of Cut-Stump Treament Herbicides For Hardwood Stump-Sprout Control

Treesearch

Clyde G. Vidrine; John C. Adams

2002-01-01

Thirteen year growth results of 1-0 out-planted loblolly pine seedlings on nonintensively prepared up-land mixed pine-hardwood sites receiving machine applied cut-stump treatment (CST) herbicides onto hardwood stumps at the time of harvesting is presented. Plantation pine growth shows significantly higher growth for pine in the CST treated plots compared to non-CST...

Genotypic comparisons of chromosomes 01, 04 and 18 from three tetraploid species of gossypium in topcrosses with five elite cultivars of G. hirsutum L

USDA-ARS?s Scientific Manuscript database

Upland cotton, Gossypium hirsutum L. is planted on most of the hectareage of cultivated cotton in the United States and the world. The cultivated tetraploid species G. barbadense L. produces extra long, strong, and fine fibers. Breeders would like to move fiber quality alleles from this species in...

Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.).

PubMed

Bahri, Bochra A; Daverdin, Guillaume; Xu, Xiangyang; Cheng, Jan-Fang; Barry, Kerrie W; Brummer, E Charles; Devos, Katrien M

2018-06-14

Advances in genomic technologies have expanded our ability to accurately and exhaustively detect natural genomic variants that can be applied in crop improvement and to increase our knowledge of plant evolution and adaptation. Switchgrass (Panicum virgatum L.), an allotetraploid (2n = 4× = 36) perennial C4 grass (Poaceae family) native to North America and a feedstock crop for cellulosic biofuel production, has a large potential for genetic improvement due to its high genotypic and phenotypic variation. In this study, we analyzed single nucleotide polymorphism (SNP) variation in 372 switchgrass genotypes belonging to 36 accessions for 12 genes putatively involved in biomass production to investigate signatures of selection that could have led to ecotype differentiation and to population adaptation to geographic zones. A total of 11,682 SNPs were mined from ~ 15 Gb of sequence data, out of which 251 SNPs were retained after filtering. Population structure analysis largely grouped upland accessions into one subpopulation and lowland accessions into two additional subpopulations. The most frequent SNPs were in homozygous state within accessions. Sixty percent of the exonic SNPs were non-synonymous and, of these, 45% led to non-conservative amino acid changes. The non-conservative SNPs were largely in linkage disequilibrium with one haplotype being predominantly present in upland accessions while the other haplotype was commonly present in lowland accessions. Tajima's test of neutrality indicated that PHYB, a gene involved in photoperiod response, was under positive selection in the switchgrass population. PHYB carried a SNP leading to a non-conservative amino acid change in the PAS domain, a region that acts as a sensor for light and oxygen in signal transduction. Several non-conservative SNPs in genes potentially involved in plant architecture and adaptation have been identified and led to population structure and genetic differentiation of ecotypes in switchgrass. We suggest here that PHYB is a key gene involved in switchgrass natural selection. Further analyses are needed to determine whether any of the non-conservative SNPs identified play a role in the differential adaptation of upland and lowland switchgrass.

Long-term patterns of fruit production in five forest types of the South Carolina upper coastal plain

DOE PAGES

Greenberg, Cathryn H.; Levey, Douglas J.; Kwit, Charles; ...

2012-02-06

Fleshy fruit is a key food resource for many vertebrates and may be particularly important energy source to birds during fall migration and winter. Hence, land managers should know how fruit availability varies among forest types, seasons, and years. We quantified fleshy fruit abundance monthly for 9 years (1995–2003) in 56 0.1-ha plots in 5 forest types of South Carolina's upper Coastal Plain, USA. Forest types were mature upland hardwood and bottomland hardwood forest, mature closed-canopy loblolly ( Pinus taeda) and longleaf pine ( P. palustris) plantation, and recent clearcut regeneration harvests planted with longleaf pine seedlings. Mean annual numbermore » of fruits and dry fruit pulp mass were highest in regeneration harvests (264,592 ± 37,444 fruits; 12,009 ± 2,392 g/ha), upland hardwoods (60,769 ± 7,667 fruits; 5,079 ± 529 g/ha), and bottomland hardwoods (65,614 ± 8,351 fruits; 4,621 ± 677 g/ha), and lowest in longleaf pine (44,104 ± 8,301 fruits; 4,102 ± 877 g/ha) and loblolly (39,532 ± 5,034 fruits; 3,261 ± 492 g/ha) plantations. Fruit production was initially high in regeneration harvests and declined with stand development and canopy closure (1995–2003). Fruit availability was highest June–September and lowest in April. More species of fruit-producing plants occurred in upland hardwoods, bottomland hardwoods, and regeneration harvests than in loblolly and longleaf pine plantations. Several species produced fruit only in 1 or 2 forest types. In sum, fruit availability varied temporally and spatially because of differences in species composition among forest types and age classes, patchy distributions of fruiting plants both within and among forest types, fruiting phenology, high inter-annual variation in fruit crop size by some dominant fruit-producing species, and the dynamic process of disturbance-adapted species colonization and decline, or recovery in recently harvested stands. As a result, land managers could enhance fruit availability for wildlife by creating and maintaining diverse forest types and age classes.« less

Development of In Vitro Systems for Switchgrass (Panicum virgatum) - Final Report for 1992 to 2002

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conger, B.V.

2003-01-16

Our project began on July 1, 1992, with the objective of developing systems that could be used in biotechnological approaches to switchgrass improvement. Within six months after initiation of the project, we had worked out protocols in which plants could be regenerated from callus cultures through both organogenesis and somatic embryogenesis. Documentation for both modes of regeneration was provided in our progress reports and in publications. One thousand regenerated plants were established in the field during the first year. We found that Alamo (lowland type) was much more amenable to in vitro culture, and plants could be regenerated much moremore » easily than from Cave-in-Rock (upland type). During the first three years of the project, we studied the influence of genotype, culture medium components, explant type, etc., on regeneration. As mentioned, we found that the lowland cultivars Alamo and Kanlow were much easier to regenerate than upland cultivars, such as Trailblazer, Blackwell, and Cave-in-Rock. For callus induction, we initially used mature caryopses, young leaf tissue, and portions of seedlings. We were successful in inducing callus and regenerating plants from all explants. Two other systems developed during the 4th to 6th year period of the project included multiple shoot formation initiated from germinated seedlings and regenerable suspension cultures. The latter were initiated from embryogenic calluses produced from in vitro developed inflorescences. An important factor for producing multiple shoots was the presence of thidiazuron in the medium. The shoots could be easily rooted and numerous plantlets produced. The last 3 to 4 years of the project focused on anther and microspore culture experiments to produce haploid plants and on genetic transformation. Although thousands of putative haploid plants were produced from a few anthers, they were very weak and difficult to keep alive. Chromosome counts revealed the gametic number in cells where it was possible to count chromosomes. The isolated microspore culture experiments were not successful.« less

Biomass, gas exchange, and nutrient contents in upland rice plants affected by application forms of microorganism growth promoters.

PubMed

Nascente, Adriano Stephan; de Filippi, Marta Cristina Corsi; Lanna, Anna Cristina; de Souza, Alan Carlos Alves; da Silva Lobo, Valácia Lemes; da Silva, Gisele Barata

2017-01-01

Microorganisms are considered a genetic resource with great potential for achieving sustainable development of agricultural areas. The objective of this research was to determine the effect of microorganism application forms on the production of biomass, gas exchange, and nutrient content in upland rice. The experiment was conducted under greenhouse conditions in a completely randomized design in a factorial 7 × 3 + 1, with four replications. The treatments consisted of combining seven microorganisms with three application forms (microbiolized seed; microbiolized seed + soil drenched with a microorganism suspension at 7 and 15 days after sowing (DAS); and microbiolized seed + plant sprayed with a microorganism suspension at 7 and 15 DAS) and a control (water). Treatments with Serratia sp. (BRM32114), Bacillus sp. (BRM32110 and BRM32109), and Trichoderma asperellum pool provided, on average, the highest photosynthetic rate values and dry matter biomass of rice shoots. Plants treated with Burkolderia sp. (BRM32113), Serratia sp. (BRM32114), and Pseudomonas sp. (BRM32111 and BRM32112) led to the greatest nutrient uptake by rice shoots. Serratia sp. (BRM 32114) was the most effective for promoting an increase in the photosynthetic rate, and for the greatest accumulation of nutrients and dry matter at 84 DAS, in rice shoots, which differed from the control treatment. The use of microorganisms can bring numerous benefits of rice, such as improving physiological characteristics, nutrient uptake, biomass production, and grain yield.

Diurnal and seasonal patterns of ecosystem CO{sub 2} efflux from upland tundra in the foothills of the Brooks Range, Alaska, U.S.A.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oberbauer, S.F.; Gillespie, C.T.; Cheng, Weixin

1996-08-01

Carbon dioxide efflux and soil microenvironment were measured in three upland tundra communities in the foothills of the Brooks Range in arctic Alaska to determine the magnitude of CO{sub 2} efflux rates and the relative importance of the belowground factors that influence them. Gas exchange and soil microenvironment measurements were made weekly between 14 June and 31 July 1990. The study communities included lichen-heath, a sparse community vegetated by lichens and dwarf ericaceous shrubs on rocky soils, moist Cassiope dwarf-shrub heath tundra, dominated by Carex and evergreen and deciduous shrubs on relatively deep organic soils, and dry Cassiope dwarf-shrub heathmore » of stone-stripe areas, which was of intermediate character. Rates of CO{sub 2} efflux were similar for the three communities until mid-season when they peaked at rates between 4.9 and 5.9 g m{sup {minus}2} d{sup {minus}1}. Following the mid-season peak, the rates in all three communities declined, particularly in the lichen-heath. Seasonal patterns of CO{sub 2} efflux, soil temperature, and soil moisture suggest changing limitations to CO{sub 2} efflux, soil temperature, and soil moisture suggest changing limitations to CO{sub 2} efflux over the course of the season. Rates of carbon dioxide efflux followed changes in soil temperature early in the season when soil moisture was highest. Mid-season efflux appeared to be limited by soil, moss, and lichen hydration until the end of July, when temperature again limited efflux. Differences between the communities were related to microenvironmental differences and probable differences in carbon quality. The presence of peat-forming mosses is suggested to play an important role in differences in efflux and micro-environment among the communities. 32 refs., 3 figs., 4 tab.« less

A phytosociological analysis and description of wetland vegetation and ecological factors associated with locations of high mortality for the 2010-11 Rift Valley fever outbreak in South Africa

PubMed Central

Zwiegers, Herman; Van Huyssteen, Cornelius W.; Karesh, William B.; Paweska, Janusz T.

2018-01-01

Rift Valley fever (RVF) is endemic in Africa and parts of the Middle East. It is an emerging zoonotic disease threat to veterinary and public health. Outbreaks of the disease have severe socio-economic impacts. RVF virus emergence is closely associated with specific endorheic wetlands that are utilized by the virus’ mosquito vectors. Limited botanical vegetation surveys had been published with regard to RVF virus (RVFV) ecology. We report on a phytosociological classification, analysis and description of wetland vegetation and related abiotic parameters to elucidate factors possibly associated with the 2010–2011 RVFV disease outbreak in South Africa. The study sites were located in the western Free State and adjacent Northern Cape covering an area of ~40,000 km2 with wetlands associated with high RVF mortality rates in livestock. Other study sites included areas where no RVF activity was reported during the 2010–11 RVF outbreak. A total of 129 plots (30 m2) were selected where a visible difference could be seen in the wetland and upland vegetation. The Braun-Blanquet method was used for plant sampling. Classification was done using modified Two-Way Indicator Species Analysis. The vegetation analysis resulted in the identification of eight plant communities, seven sub-communities and two variants. Indirect ordination was carried out using CANOCO to investigate the relationship between species and wetland ecology. The study also identified 5 categories of wetlands including anthropogenic wetlands. Locations of reported RVF cases overlapped sites characterized by high clay-content soils and specific wetland vegetation. These findings indicate ecological and environmental parameters that represent preferred breeding habitat for RVFV competent mosquito vectors. PMID:29462214

Arthropod prey for riparian associated birds in headwater forests of the Oregon Coast Range

USGS Publications Warehouse

Hagar, Joan C.; Li, Judith; Sobota, Janel; Jenkins, Stephanie

2012-01-01

Headwater riparian areas occupy a large proportion of the land base in Pacific Northwest forests, and thus are ecologically and economically important. Although a primary goal of management along small headwater streams is the protection of aquatic resources, streamside habitat also is important for many terrestrial wildlife species. However, mechanisms underlying the riparian associations of some terrestrial species have not been well studied, particularly for headwater drainages. We investigated the diets of and food availability for four bird species associated with riparian habitats in montane coastal forests of western Oregon, USA. We examined variation in the availability of arthropod prey as a function of distance from stream. Specifically, we tested the hypotheses that (1) emergent aquatic insects were a food source for insectivorous birds in headwater riparian areas, and (2) the abundances of aquatic and terrestrial arthropod prey did not differ between streamside and upland areas during the bird breeding season. We found that although adult aquatic insects were available for consumption throughout the study period, they represented a relatively small proportion of available prey abundance and biomass and were present in only 1% of the diet samples from only one of the four riparian-associated bird species. Nonetheless, arthropod prey, comprised primarily of insects of terrestrial origin, was more abundant in streamside than upland samples. We conclude that food resources for birds in headwater riparian areas are primarily associated with terrestrial vegetation, and that bird distributions along the gradient from streamside to upland may be related to variation in arthropod prey availability. Because distinct vegetation may distinguish riparian from upland habitats for riparian-associated birds and their terrestrial arthropod prey, we suggest that understory communities be considered when defining management zones for riparian habitat.

7 CFR 1205.305 - Upland cotton.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 10 2013-01-01 2013-01-01 false Upland cotton. 1205.305 Section 1205.305 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.305 Upland cotton. Upland cotton means all cultivated...

7 CFR 1205.305 - Upland cotton.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 10 2012-01-01 2012-01-01 false Upland cotton. 1205.305 Section 1205.305 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.305 Upland cotton. Upland cotton means all cultivated...

7 CFR 1205.305 - Upland cotton.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 10 2010-01-01 2010-01-01 false Upland cotton. 1205.305 Section 1205.305 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.305 Upland cotton. Upland cotton means all cultivated...

7 CFR 1205.305 - Upland cotton.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 10 2011-01-01 2011-01-01 false Upland cotton. 1205.305 Section 1205.305 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.305 Upland cotton. Upland cotton means all cultivated...

7 CFR 1205.305 - Upland cotton.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 10 2014-01-01 2014-01-01 false Upland cotton. 1205.305 Section 1205.305 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.305 Upland cotton. Upland cotton means all cultivated...

Effects of introduced small wood in a degraded stream on fish community and functional diversity

Treesearch

Ken A. Sterling; Melvin L.  Warren Jr.

2018-01-01

Abstract - Though the effects of introduced wood on fishes is widely studied for salmonids in upland coldwater streams, there are few studies on this topic conducted in the Coastal Plain of the southeastern US. This research gap is problematic because the introduction of wood is a critical component of efforts aimed at conserving the threatened fish diversity of the...

Organic matter accumulation and community change at the peatland-upland interface: inferences from 14C and 210Pb dated profiles

Treesearch

Ilka E. Bauer; Jagtar S. Bhatti; Christopher Swanston; R. Kelman Wieder; Caroline M. Perston

2009-01-01

Peatland-margin habitats with organic matter accumulation of 40-150 cm make up a significant but poorly quantified portion of Canada's boreal forest region. Spanning the transition between non-wetland forest and fen proper, these ecosystems represent a zone of complex environmental and vegetation change, yet little is known about their ecological function or...

Holding onto the Green Zone: A Youth Program for the Study and Stewardship of Community Riparian Areas. Leader Guide

ERIC Educational Resources Information Center

Reilly, Kate; Wooster, Betsy

2008-01-01

Riparian ecosystems are an exciting and dynamic subject for study. These areas are valuable lands and important wildlife habitats, and they contribute greatly to the environmental health of an area. Definitions for the term "riparian" vary, but in this curriculum, the land called the "Green Zone" lies between flowing water and upland ecosystems.…

Understory vegetation composition and abundance in relation to light, water, and nutrient supply gradients in upland oak woodlands

Treesearch

Elizabeth K. Olson; John M. Kabrick

2014-01-01

The Ozark Highlands of Missouri have experienced a complicated series of exploitive events (Flader 2004). The area was heavily cut over for timber at the turn of the last century and was overgrazed by privately owned livestock through the early 1900s. Decades of fire suppression since the 1940s further altered plant composition and structure. The current state of...

The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum)

PubMed Central

Milano, Elizabeth R.; Lowry, David B.; Juenger, Thomas E.

2016-01-01

The evolution of locally adapted ecotypes is a common phenomenon that generates diversity within plant species. However, we know surprisingly little about the genetic mechanisms underlying the locally adapted traits involved in ecotype formation. The genetic architecture underlying locally adapted traits dictates how an organism will respond to environmental selection pressures, and has major implications for evolutionary ecology, conservation, and crop breeding. To understand the genetic architecture underlying the divergence of switchgrass (Panicum virgatum) ecotypes, we constructed a genetic mapping population through a four-way outbred cross between two northern upland and two southern lowland accessions. Trait segregation in this mapping population was largely consistent with multiple independent loci controlling the suite of traits that characterizes ecotype divergence. We assembled a joint linkage map using ddRADseq, and mapped quantitative trait loci (QTL) for traits that are divergent between ecotypes, including flowering time, plant size, physiological processes, and disease resistance. Overall, we found that most QTL had small to intermediate effects. While we identified colocalizing QTL for multiple traits, we did not find any large-effect QTL that clearly controlled multiple traits through pleiotropy or tight physical linkage. These results indicate that ecologically important traits in switchgrass have a complex genetic basis, and that similar loci may underlie divergence across the geographic range of the ecotypes. PMID:27613751

Regeneration alternatives for upland white spruce after burning and logging in interior Alaska

USGS Publications Warehouse

Densmore, R.V.; Juday, G.P.; Zasada, J.C.

1999-01-01

Site-preparation and regeneration methods for white spruce (Picea glauca (Moench) Voss) were tested near Fairbanks, Alaska, on two upland sites which had been burned in a wildfire and salvage logged. After 5 and 10 years, white spruce regeneration did not differ among the four scarification methods but tended to be lower without scarification. Survival of container-grown planted seedlings stabilized after 3 years at 93% with scarification and at 76% without scarification. Broadcast seeding was also successful, with one or more seedlings on 80% of the scarified 6-m2 subplots and on 60% of the unscarified subplots after 12 years. Natural regeneration after 12 years exceeded expectations, with seedlings on 50% of the 6-m2 subplots 150 m from a seed source and on 28% of the subplots 230 m from a seed source. After 5 years, 37% of the scarified unsheltered seed spots and 52% of the scarified seed spots with cone shelters had one or more seedlings, but only 16% of the unscarified seed spots had seedlings, with and without funnel shelters. Growth rates for all seedlings were higher than on similar unburned sites. The results show positive effects of burning in interior Alaska, and suggest planting seedlings, broadcast seeding, and natural seedfall, alone or in combination, as viable options for similar sites.

Somatic embryogenesis of East Kalimantan local upland rice varieties

NASA Astrophysics Data System (ADS)

Nurhasanah; Ramitha; Supriyanto, B.; Sunaryo, W.

2018-04-01

Somatic embryogenesis is the formation, growth and development of embryos from somatic cells. Somatic embryo induction is one of the in vitro plant propagation techniques that is very important for plant developmental purposes. Four local upland rice varieties of East Kalimantan, Mayas Pancing, Gedagai, Siam and Serai, were used in this study. A total of 200 explants (mature rice grains) for each varieties were inoculated on MS solid medium supplemented with 1 mg L-1 2,4 Dichlorophenoxy acetic acid (2,4-D) and 0.5 mg L-1 6-Benzylaminopurine (BAP). The results showed that response of each variety differed to embryosomatic induction, indicated by callus induction rate and callus quality, in terms of callus color and structure. The fastest callus formation was sobserved in Gedagai variety (8 days) while Mayas Pancing (13 days) was the latest one. The rate of callus induction varied from 60 to 98.5 %, and Serai variety has the highest callus induction rate. The highest friable callus structure was found in Siam variety (89.1%) and the lowest was in Gedagai (62.5%). Callus color was dominated by the yellowish-white (transparent) on all varieties tested. Most of the callus was potential as embryogenic callus characterized from the nodular and globular of friable callus structure and its yellowish-white color.

Multiscale remote sensing analysis to monitor riparian and upland semiarid vegetation

NASA Astrophysics Data System (ADS)

Nguyen, Uyen

The health of natural vegetation communities is of concern due to observed changes in the climatic-hydrological regime and land cover changes particularly in arid and semiarid regions. Monitoring vegetation at multi temporal and spatial scales can be the most informative approach for detecting change and inferring causal agents of change and remediation strategies. Riparian communities are tightly linked to annual stream hydrology, ground water elevations and sediment transport. These processes are subject to varying magnitudes of disturbance overtime and are candidates for multi-scale monitoring. My first research objective focused on the response of vegetation in the Upper San Pedro River, Arizona, to reduced base flows and climate change. I addressed the correlation between riparian vegetation and hydro-climate variables during the last three decades in one of the remaining undammed rivers in the southwestern U.S. Its riparian forest is threatened by the diminishing base flows, attributed by different studies either to increases in evapotranspiration (ET) due to conversion of grasslands to mesquite shrublands in the adjacent uplands, or to increased regional groundwater pumping to serve growing populations in surrounding urban areas and or to some interactions of those causes. Landsat 5 imagery was acquired for pre- monsoon period, when riparian trees had leafed out but before the arrival of summer monsoon rains in July. The result has showed Normalized Difference Vegetation Index (NDVI) values from both Landsat and Moderate Resolution Imaging Spectrometer (MODIS) had significant decreases which positively correlated to river flows, which decreased over the study period, and negatively correlated with air temperatures, which have increased by about 1.4°C from 1904 to the present. The predictions from other studies that decreased river flows could negatively impact the riparian forest were supported by this study. The pre-monsoon Normalized Different Vegetation Index (NDVI) average values in the adjacent uplands also decreased over thirty years and were correlated with the previous year's annual precipitation. Hence an increase in ET in the uplands did not appear to be responsible for the decrease in river flows in this study, leaving increased regional groundwater pumping as a feasible alternative explanation for decreased flows and deterioration of the riparian forest. The second research objective was to develop a new method of classification using very high-resolution aerial photo to map riparian vegetation at the species level in the Colorado River Ecosystem, Grand Canyon area, Arizona. Ground surveys have showed an obvious trend in which non-native saltcedar (Tamarix spp.) has replaced native vegetation over time. Our goal was to develop a quantitative mapping procedure to detect changes in vegetation as the ecosystem continues to respond to hydrological and climate changes. Vegetation mapping for the Colorado River Ecosystem needed an updated database map of the area covered by riparian vegetation and an indicator of species composition in the river corridor. The objective of this research was to generate a new riparian vegetation map at species level using a supervised image classification technique for the purpose of patch and landscape change detection. A new classification approach using multispectral images allowed us to successfully identify and map riparian species coverage the over whole Colorado River Ecosystem, Grand Canyon area. The new map was an improvement over the initial 2002 map since it reduced fragmentation from mixed riparian vegetation areas. The most dominant tree species in the study areas is saltcedar (Tamarix spp.). The overall accuracy is 93.48% and the kappa coefficient is 0.88. The reference initial inventory map was created using 2002 images to compare and detect changes through 2009. The third objective of my research focused on using multiplatform of remote sensing and ground calibration to estimate the effects of vegetation, land use patterns and water cycles. Climate change, hydrological and human uses are also leading to riparian, upland, grassland and crop vegetation changes at a variety of temporal and spatial scales, particularly in the arid and semi arid ecosystems, which are more sensitive to changes in water availability than humid ecosystems. The objectives of these studies from the last three articles were to evaluate the effect of water balance on vegetation indices in different plant communities based on relevant spatial and temporal scales. The new methodology of estimating water requirements using remote sensing data and ground calibration with flux tower data has been successfully tested at a variety sites, a sparse desert shrub environment as well as mixed riparian and cropland systems and upland vegetation in the arid and semi-arid regions. The main finding form these studies is that vegetation-index methods have to be calibrated with ground data for each new ecosystem but once calibrated they can accurately scale ET over wide areas and long time spans.

7 CFR 1205.13 - Upland cotton.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 10 2014-01-01 2014-01-01 false Upland cotton. 1205.13 Section 1205.13 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Procedures for Conduct of Sign-up Period Definitions § 1205.13 Upland cotton. The term Upland cotton means...

7 CFR 1205.13 - Upland cotton.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 10 2011-01-01 2011-01-01 false Upland cotton. 1205.13 Section 1205.13 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Procedures for Conduct of Sign-up Period Definitions § 1205.13 Upland cotton. The term Upland cotton means...

7 CFR 1205.13 - Upland cotton.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 10 2010-01-01 2010-01-01 false Upland cotton. 1205.13 Section 1205.13 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Procedures for Conduct of Sign-up Period Definitions § 1205.13 Upland cotton. The term Upland cotton means...

7 CFR 1205.13 - Upland cotton.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 10 2012-01-01 2012-01-01 false Upland cotton. 1205.13 Section 1205.13 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Procedures for Conduct of Sign-up Period Definitions § 1205.13 Upland cotton. The term Upland cotton means...

7 CFR 1205.13 - Upland cotton.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 10 2013-01-01 2013-01-01 false Upland cotton. 1205.13 Section 1205.13 Agriculture... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Procedures for Conduct of Sign-up Period Definitions § 1205.13 Upland cotton. The term Upland cotton means...

The flora of the Cottonwood Lake Study Area, Stutsman County, North Dakota

USGS Publications Warehouse

Mushet, D.M.; Euliss, N.H.; Lane, S.P.; Goldade, C.M.

2004-01-01

The 92 ha Cottonwood Lake Study Area is located in south-central North Dakota along the eastern edge of a glacial stagnation moraine known as the Missouri Coteau. The study area has been the focus of biologic and hydrologic research since the U.S. Fish and Wildlife Service purchased the site in 1963. We studied the plant communities of the Cottonwood Lake Study Area from 1992 to 2001. During this time period, the vascular flora of the study area consisted of 220 species representing 51 families. Over half of the species were perennial forbs (117 species). Perennial grasses (26 species) and annual forbs (22 species) made up the next two largest physiognomic groupings. The flora, having a mean Coefficient of Conservatism of 4.6 and a Floristic Quality Index of 62, consisted of 187 native species. Thirty-three species were non-natives. Our annotated list should provide information useful to researchers, graduate students, and others as they design and implement future studies in wetlands and uplands both in and around the Cottonwood Lake Study Area.

Changing Arctic ecosystems: resilience of caribou to climatic shifts in the Arctic

USGS Publications Warehouse

Gustine, David D.; Adams, Layne G.; Whalen, Mary E.; Pearce, John M.

2014-01-01

The U.S. Geological Survey (USGS) Changing Arctic Ecosystems (CAE) initiative strives to inform key resource management decisions for Arctic Alaska by providing scientific information and forecasts for current and future ecosystem response to a warming climate. Over the past 5 years, a focal area for the USGS CAE initiative has been the North Slope of Alaska. This region has experienced a warming trend over the past 60 years, yet the rate of change has been varied across the North Slope, leading scientists to question the future response and resilience of wildlife populations, such as caribou (Rangifer tarandus), that rely on tundra habitats for forage. Future changes in temperature and precipitation to coastal wet sedge and upland low shrub tundra are expected, with unknown consequences for caribou that rely on these plant communities for food. Understanding how future environmental change may affect caribou migration, nutrition, and reproduction is a focal question being addressed by the USGS CAE research. Results will inform management agencies in Alaska and people that rely on caribou for food.

Science foundation Chapter 5 Appendix 5.1: Case study marsh macroinvertebrates

USGS Publications Warehouse

Brusati, Elizabeth; Woo, Isa

2015-01-01

This case study includes representative macroinvertebrates that live in the marsh plain, its associated channels and pannes (ponds), and the marsh-upland transition zone. While less visible than animals such as birds, invertebrates play important roles in physical and biological processes (e.g., burrowing activity and channel bank erosion, and detritivores breaking down organic matter) and are important food resources for higher trophic animals. Common invertebrates in these habitats include plant-hopper (Prokelisia marginata), beach hopper (Traskorchestia traskiana), pygmy blue butterfly (Brephidium exilis), inchworm moth (Perizoma custodiata), western tanarthus beetle (Tanarthus occidentalis), salt marsh mosquitoes (Aedes spp.; Maffei 2000a, Maffei 2000b, Maffei 2000c), crabs (native Hemigrapsus oregonensis and introduced Carcinus maenas), copepods, snails (e.g. native California horn snail Cerithidea californica and introduced Ilyanassa obsoleta, Myosotella myosotis), polychaetes (e.g. Capitella spp., Eteone californica, Neanthes brandti), small clams (Macoma petalum/M. balthica), and corophiid amphipods (Cohen 2011, Race 1982, Robinson et al. 2011). Some common species were described in detail in the San Francisco Bay Goals Project Species and Community Profiles (Goals Project 2000).

7 CFR 1427.103 - Upland cotton Domestic User Agreement.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 10 2010-01-01 2010-01-01 false Upland cotton Domestic User Agreement. 1427.103... CORPORATION, DEPARTMENT OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.103 Upland cotton Domestic User Agreement. (a) Payments specified...

7 CFR 1427.103 - Upland cotton Domestic User Agreement.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 10 2013-01-01 2013-01-01 false Upland cotton Domestic User Agreement. 1427.103... CORPORATION, DEPARTMENT OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.103 Upland cotton Domestic User Agreement. (a) Payments specified...

7 CFR 1427.103 - Upland cotton Domestic User Agreement.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 10 2014-01-01 2014-01-01 false Upland cotton Domestic User Agreement. 1427.103... CORPORATION, DEPARTMENT OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.103 Upland cotton Domestic User Agreement. (a) Payments specified...

7 CFR 1427.103 - Upland cotton Domestic User Agreement.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 10 2012-01-01 2012-01-01 false Upland cotton Domestic User Agreement. 1427.103... CORPORATION, DEPARTMENT OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.103 Upland cotton Domestic User Agreement. (a) Payments specified...

7 CFR 1427.103 - Upland cotton Domestic User Agreement.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 10 2011-01-01 2011-01-01 false Upland cotton Domestic User Agreement. 1427.103... CORPORATION, DEPARTMENT OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS COTTON Economic Adjustment Assistance to Users of Upland Cotton § 1427.103 Upland cotton Domestic User Agreement. (a) Payments specified...

Pluto: Pits and mantles on uplands north and east of Sputnik Planitia

NASA Astrophysics Data System (ADS)

Howard, Alan D.; Moore, Jeffrey M.; White, Oliver L.; Umurhan, Orkan M.; Schenk, Paul M.; Grundy, William M.; Schmitt, Bernard; Philippe, Sylvain; McKinnon, William B.; Spencer, John R.; Beyer, Ross A.; Stern, S. Alan; Ennico, Kimberly; Olkin, Cathy B.; Weaver, Harold A.; Young, Leslie A.; New Horizons Science Team

2017-09-01

The highlands region north and east of Sputnik Planitia can be subdivided into seven terrain types based on their physiographic expression. The northern rough uplands are characterized by jagged uplands and broad troughs, and it may contain a deeply-eroded ancient mantle. Dissected terrain has been interpreted to have been eroded by paleo-glaciation. The smooth uplands and pits terrain contains broad, rolling uplands surrounding complexes of pits, some of which contain smooth floors. The uplands are mantled by smooth-surfaced deposits possibly derived from adjacent pits through low-power explosive cryovolcanism or through slow vapor condensation. The eroded smooth uplands appear to have originally been smooth uplands and pits terrain modified by small-scale sublimation pitting. The bright pitted uplands features intricate texturing by reticulate ridges that may have originated by sublimation erosion, volatile condensation, or both. The bladed terrain is characterized by parallel ridges oriented north-south and is discussed in a separate paper. The dark uplands are mantled with reddish deposits that may be atmospherically deposited tholins. Their presence has affected long-term landform evolution. Widespread pit complexes occur on most of the terrain units. Most appear to be associated with tectonic lineations. Some pits are floored by broad expanses of ices, whereas most feature deep, conical depressions. A few pit complexes are enclosed by elevated rims of uncertain origin.

Cryptic Methane Emissions from Upland Forest Ecosystems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Megonigal, Patrick; Pitz, Scott

This exploratory research on Cryptic Methane Emissions from Upland Forest Ecosystems was motivated by evidence that upland ecosystems emit 36% as much methane to the atmosphere as global wetlands, yet we knew almost nothing about this source. The long-term objective was to refine Earth system models by quantifying methane emissions from upland forests, and elucidate the biogeochemical processes that govern upland methane emissions. The immediate objectives of the grant were to: (i) test the emerging paradigm that upland trees unexpectedly transpire methane, (ii) test the basic biogeochemical assumptions of an existing global model of upland methane emissions, and (iii) developmore » the suite of biogeochemical approaches that will be needed to advance research on upland methane emissions. We instrumented a temperate forest system in order to explore the processes that govern upland methane emissions. We demonstrated that methane is emitted from the stems of dominant tree species in temperate upland forests. Tree emissions occurred throughout the growing season, while soils adjacent to the trees consumed methane simultaneously, challenging the concept that forests are uniform sinks of methane. High frequency measurements revealed diurnal cycling in the rate of methane emissions, pointing to soils as the methane source and transpiration as the most likely pathway for methane transport. We propose the forests are smaller methane sinks than previously estimated due to stem emissions. Stem emissions may be particularly important in upland tropical forests characterized by high rainfall and transpiration, resolving differences between models and measurements. The methods we used can be effectively implemented in order to determine if the phenomenon is widespread.« less

The Elusive Search for Reniform Nematode Resistance in Cotton.

PubMed

Khanal, Churamani; McGawley, Edward C; Overstreet, Charles; Stetina, Salliana R

2018-05-01

The reniform nematode (Rotylenchulus reniformis Linford and Oliveira) has emerged as the most important plant-parasitic nematode of cotton in the United States cotton belt. Success in the development of reniform nematode-resistant upland cotton cultivars (Gossypium hirsutum L.) has not been realized despite over three decades of breeding efforts. Research approaches ranging from conventional breeding to triple species hybrids to marker-assisted selection have been employed to introgress reniform nematode resistance from other species of cotton into upland cultivars. Reniform nematode-resistant breeding lines derived from G. longicalyx were developed in 2007. However, these breeding lines displayed stunting symptoms and a hypersensitive response to reniform nematode infection. Subsequent breeding efforts focused on G. barbadense, G. aridum, G. armoreanum, and other species that have a high level of resistance to reniform nematode. Marker-assisted selection has greatly improved screening of reniform nematode-resistant lines. The use of advanced molecular techniques such as CRISPER-Cas9 systems and alternative ways such as delivery of suitable "cry" proteins and specific double-stranded RNA to nematodes will assist in developing resistant cultivars of cotton. In spite of the efforts of cotton breeders and nematologists, successes are limited only to the development of reniform nematode-resistant breeding lines. In this article, we provide an overview of the approaches employed to develop reniform nematode-resistant upland cotton cultivars in the past, progress to date, major obstacles, and some promising future research activity.

Desert fires fueled by native annual forbs: effects of fire on communities of plants and birds in the lower Sonoran Desert of Arizona

USGS Publications Warehouse

Esque, Todd C.; Webb, Robert H.; Wallace, Cynthia S.A.; van Riper, Charles; McCreedy, Chris; Smythe, Lindsay A.

2013-01-01

In 2005, fire ignited by humans swept from Yuma Proving Grounds into Kofa National Wildlife Refuge, Arizona, burning ca. 9,255 ha of Wilderness Area. Fuels were predominantly the native forb Plantago ovata. Large fires at low elevations were rare in the 19th and 20th centuries, and fires fueled by native vegetation are undocumented in the southwestern deserts. We estimated the area damaged by fire using Moderate Resolution Imaging Spectroradiometer and Normalized Difference Vegetation Index, which are more accurate and reduce subjectivity of aerial surveys of perimeters of fires. Assemblages of upland and xeroriparian plants lost 91 and 81% of live cover, respectively, in fires. The trees Olneya tesota and Cercidium had high amounts of top-kill. King Valley was an important xeroriparian corridor for birds. Species richness of birds decreased significantly following the fire. Numbers of breeding birds were lower in burned areas of King Valley 3 years post-fire, compared to numbers in nearby but unburned Alamo Wash. Although birds function within a large geographic scale, the extent of this burn still influenced the relative abundance of local species of breeding birds. This suggests that breeding birds respond to conditions of localized burns and slow recovery of vegetation contributes to continued lower numbers of birds in the burned sites in King Valley.

Desert fires fueled by native annual forbs: Effects of fire on communities of plants and birds in the Lower Sonoran Desert of Arizona

USGS Publications Warehouse

Esque, Todd C.; Webb, Robert H.; Wallace, Cynthia S.A.; van Riper, Charles; McCreedy, Chris; Smythe, Lindsay A.

2013-01-01

In 2005, fire ignited by humans swept from Yuma Proving Grounds into Kofa National Wildlife Refuge, Arizona, burning ca. 9,255 ha of Wilderness Area. Fuels were predominantly the native forb Plantago ovata. Large fires at low elevations were rare in the 19th and 20th centuries, and fires fueled by native vegetation are undocumented in the southwestern deserts. We estimated the area damaged by fire using Moderate Resolution Imaging Spectroradiometer and Normalized Difference Vegetation Index, which are more accurate and reduce subjectivity of aerial surveys of perimeters of fires. Assemblages of upland and xeroriparian plants lost 91 and 81% of live cover, respectively, in fires. The trees Olneya tesota and Cercidium had high amounts of top-kill. King Valley was an important xeroriparian corridor for birds. Species richness of birds decreased significantly following the fire. Numbers of breeding birds were lower in burned areas of King Valley 3 years post-fire, compared to numbers in nearby but unburned Alamo Wash. Although birds function within a large geographic scale, the extent of this burn still influenced the relative abundance of local species of breeding birds. This suggests that breeding birds respond to conditions of localized burns and slow recovery of vegetation contributes to continued lower numbers of birds in the burned sites in King Valley.

Use of individualistic streamflow-vegetation relations along the Fremont River, Utah, USA to assess impacts of flow alteration on wetland and riparian area

USGS Publications Warehouse

Auble, G.T.; Scott, M.L.; Friedman, J.M.

2005-01-01

We analyzed the transverse pattern of vegetation along a reach of the Fremont River in Capitol Reef National Park, Utah, USA using models that support both delineation of wetland extent and projection of the changes in wetland area resulting from upstream hydrologic alteration. We linked stage-discharge relations developed by a hydraulic model to a flow-duration curve derived from the flow history in order to calculate the inundation duration of 361 plots (0.5 × 2 m). Logistic regression was used to relate plant species occurrence in plots to inundation duration. A weighted average of the wetland indicator values of species was used to characterize plots as Aquatic, Wetland, Transitional, or Upland. Finally, we assessed how alterations in the flow duration curve would change the relative widths of these four zones. The wetland indicator values of species and the wetland prevalence index scores of plots were strongly correlated with inundation duration. Our results support the concept that plants classified as wetland species typically occur on sites inundated at least two weeks every two years. The portion of the riparian zone along the high-gradient study reach of the Fremont River that satisfied the vegetation criterion for a regulatory wetland was narrow (2 m wide). Both the unvegetated Aquatic zone (7.8 m) and the Transitional zone (8 m) were substantially wider. The Transitional zone included the maxima of several species and was, therefore, not merely a combination of elements of the Wetland and Upland zones. Multiplicative increases or decreases in streamflow regime produced a wetter, or drier, bottomland vegetation, respectively. Systematic reductions in flow variability reduced the width of both the Wetland and Transitional zones and increased the width of the Upland zone. Our approach is widely applicable to inform water management decisions involving changes in flow regime.

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs.

PubMed

Huang, Cong; Nie, Xinhui; Shen, Chao; You, Chunyuan; Li, Wu; Zhao, Wenxia; Zhang, Xianlong; Lin, Zhongxu

2017-11-01

Gossypium hirsutum L. represents the largest source of textile fibre, and China is one of the largest cotton-producing and cotton-consuming countries in the world. To investigate the genetic architecture of the agronomic traits of upland cotton in China, a diverse and nationwide population containing 503 G. hirsutum accessions was collected for a genome-wide association study (GWAS) on 16 agronomic traits. The accessions were planted in four places from 2012 to 2013 for phenotyping. The CottonSNP63K array and a published high-density map based on this array were used for genotyping. The 503 G. hirsutum accessions were divided into three subpopulations based on 11 975 quantified polymorphic single-nucleotide polymorphisms (SNPs). By comparing the genetic structure and phenotypic variation among three genetic subpopulations, seven geographic distributions and four breeding periods, we found that geographic distribution and breeding period were not the determinants of genetic structure. In addition, no obvious phenotypic differentiations were found among the three subpopulations, even though they had different genetic backgrounds. A total of 324 SNPs and 160 candidate quantitative trait loci (QTL) regions were identified as significantly associated with the 16 agronomic traits. A network was established for multieffects in QTLs and interassociations among traits. Thirty-eight associated regions had pleiotropic effects controlling more than one trait. One candidate gene, Gh_D08G2376, was speculated to control the lint percentage (LP). This GWAS is the first report using high-resolution SNPs in upland cotton in China to comprehensively investigate agronomic traits, and it provides a fundamental resource for cotton genetic research and breeding. © 2017 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

Oak-Black Bear Relationships in Southeastern Uplands

Treesearch

Joseph D. Clark

2004-01-01

Bears (Ursus americanus) primarily occur in upland habitats in the Southeast because uplands were the last to be developed for agriculture and were more likely to become publicly owned. National parks and forests created in the early to mid-1900s served as sources to supply surrounding uplands with bears. Bears could not survive in southeastern...

Habitat Evaluation Procedures (HEP) Report : Rainwater Wildlife Area, 1998-2001 Technical Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Childs, Allen

The 8,768 acre Rainwater Wildlife Area was acquired in September 1998 by the Confederated Tribes of the Umatilla Indian Reservation (CTUIR) through an agreement with Bonneville Power Administration (BPA) to partially offset habitat losses associated with construction of the John Day and McNary hydroelectric facilities on the mainstem Columbia River. U.S. Fish and Wildlife Service (USFWS) Habitat Evaluation Procedures (HEP) were used to determine the number of habitat units credited to BPA for acquired lands. Upland and riparian forest, upland and riparian shrub, and grassland rover types are evaluated in this study. Targeted wildlife species include downy woodpecker (Picoides pubescens),more » black-capped chickadee (Parus atricopillus), blue grouse (Dendragapus obscurus), great blue heron (Ardea herodias), yellow warbler (Dendroica petechia), mink (Mustela vison), and Western meadowlark (Sturnella neglects). Habitat surveys were conducted in 1998 and 1999 in accordance with published HEP protocols and included 65,300, 594m{sup 2} plots, and 112 one-tenth-acre plots. Between 153.3 and 7,187.46 acres were evaluated for each target wildlife mitigation species. Derived habitat suitability indices were multiplied by corresponding cover-type acreages to determine the number of habitat units for each species. The total baseline habitat units credited to BPA for the Rainwater Wildlife Area and its seven target species is 5,185.3 habitat units. Factors limiting habitat suitability are related to the direct, indirect, and cumulative effects of past livestock grazing, road construction, and timber harvest which have simplified the structure, composition, and diversity of native plant communities. Alternatives for protecting and improving habitat suitability include exclusion of livestock grazing, road de-commissioning/obliteration, reforestation and thinning, control of competing and unwanted vegetation (including noxious weeds), reestablishing displaced or reduced native vegetation species, allowance of normative processes such as fire occurrence, and facilitating development of natural stable stream channels and associated floodplains. Implementation of habitat enhancement and restoration activities could generate an additional 1,850 habitat units in 10 years. Baseline and estimated future habitat units total 7,035.3 for the Rainwater Wildlife Area. Habitat protection, enhancement and restoration will require long-term commitments from managers to increase probabilities of success and meet the goals and objectives of the Northwest Power Planning Council's Fish and Wildlife Mitigation Program. Longer-term benefits of protection and enhancement activities include increases in native species diversity and plant community resiliency in all cover types. Watershed conditions, including floodplain/riparian, and instream habitat quality should improve as well providing multiple benefits for terrestrial and aquatic resources. While such benefits are not necessarily recognized by HEP models and reflected in the number of habitat units generated, they are consistent with the NPPC Fish and Wildlife Program.« less

Tropical forest soil microbial communities couple iron and carbon biogeochemistry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dubinsky, E.A.; Silver, W.L.; Firestone, M.K.

2009-10-15

We report that iron-reducing bacteria are primary mediators of anaerobic carbon oxidation in upland tropical soils spanning a rainfall gradient (3500 - 5000 mm yr-1) in northeast Puerto Rico. The abundant rainfall and high net primary productivity of these tropical forests provide optimal soil habitat for iron-reducing and iron-oxidizing bacteria. Spatially and temporally dynamic redox conditions make iron-transforming microbial communities central to the belowground carbon cycle in these wet tropical forests. The exceedingly high abundance of iron-reducing bacteria (up to 1.2 x 10{sup 9} cells per gram soil) indicated that they possess extensive metabolic capacity to catalyze the reduction ofmore » iron minerals. In soils from the higher rainfall sites, measured rates of ferric iron reduction could account for up to 44 % of organic carbon oxidation. Iron reducers appeared to compete with methanogens when labile carbon availability was limited. We found large numbers of bacteria that oxidize reduced iron at sites with high rates of iron reduction and large numbers of iron-reducers. the coexistence of large populations of ironreducing and iron-oxidizing bacteria is evidence for rapid iron cycling between its reduced and oxidized states, and suggests that mutualistic interactions among these bacteria ultimately fuel organic carbon oxidation and inhibit CH4 production in these upland tropical forests.« less

Breeding bird response to partially harvested riparian management zones

USGS Publications Warehouse

Chizinski, Christopher J.; Peterson, Anna; Hanowski, JoAnn; Blinn, Charles R.; Vondracek, Bruce C.; Niemi, Gerald

2011-01-01

We compared avian communities among three timber harvesting treatments in 45-m wide even-age riparian management zones (RMZs) placed between upland clearcuts and along one side of first- or second-order streams in northern Minnesota, USA. The RMZs had three treatments: (1) unharvested, (2) intermediate residual basal area (RBA) (targeted goal 11.5 m2/ha, realized 16.0 m2/ha), and (3) low RBA (targeted goal 5.7 m2/ha, realized 8.7 m2/ha). Surveys were conducted one year pre-harvest and three consecutive years post-harvest. There was no change in species richness, diversity, or total abundance associated with harvest but there were shifts in the types of birds within the community. In particular, White-throated Sparrows (Zonotrichia albicollis) and Chestnut-sided Warblers (Dendroica pensylvanica) increased while Ovenbirds (Seiurus aurocapilla) and Red-eyed Vireos (Vireo olivaceus) decreased. The decline of avian species associated with mature forest in the partially harvested treatments relative to controls indicates that maintaining an unharvested RMZ adjacent to an upland harvest may aid in maintaining avian species associated mature forest in Minnesota for at least three years post-harvest. However, our observations do not reflect reproductive success, which is an area for future research.

Downstream cumulative effects of land use on freshwater communities

NASA Astrophysics Data System (ADS)

Kuglerová, L.; Kielstra, B. W.; Moore, D.; Richardson, J. S.

2015-12-01

Many streams and rivers are subject to disturbance from intense land use such as urbanization and agriculture, and this is especially obvious for small headwaters. Streams are spatially organized into networks where headwaters represent the tributaries and provide water, nutrients, and organic material to the main stems. Therefore perturbations within the headwaters might be cumulatively carried on downstream. Although we know that the disturbance of headwaters in urban and agricultural landscapes poses threats to downstream river reaches, the magnitude and severity of these changes for ecological communities is less known. We studied stream networks along a gradient of disturbance connected to land use intensity, from urbanized watersheds to watersheds placed in agricultural settings in the Greater Toronto Area. Further, we compared the patterns and processes found in the modified watershed to a control watershed, situated in a forested, less impacted landscape. Preliminary results suggest that hydrological modifications (flash floods), habitat loss (drainage and sewer systems), and water quality issues of small streams in urbanized and agricultural watersheds represent major disturbances and threats for aquatic and riparian biota on local as well as larger spatial scales. For example, communities of riparian plants are dominated by species typical of the land use on adjacent uplands as well as the dominant land use on the upstream contributing area, instead of riparian obligates commonly found in forested watersheds. Further, riparian communities in disturbed environments are dominated by invasive species. The changes in riparian communities are vital for various functions of riparian vegetation. Bank erosion control is suppressed, leading to severe channel transformations and sediment loadings in urbanized watersheds. Food sources for instream biota and thermal regimes are also changed, which further triggers alterations of in-stream biological communities. These findings clearly demonstrate that in watersheds which are disturbed by intensive land use, the eco-hydrological linkages between biota and fluvial processes significantly differ from those in more natural and forested landscapes.

Negative effects of climate change on upland grassland productivity and carbon fluxes are not attenuated by nitrogen status.

PubMed

Eze, Samuel; Palmer, Sheila M; Chapman, Pippa J

2018-05-09

Effects of climate change on managed grassland carbon (C) fluxes and biomass production are not well understood. In this study, we investigated the individual and interactive effects of experimental warming (+3 °C above ambient summer daily range of 9-12 °C), supplemental precipitation (333 mm +15%) and drought (333 mm -23%) on plant biomass, microbial biomass C (MBC), net ecosystem exchange (NEE) and dissolved organic C (DOC) flux in soil cores from two upland grasslands of different soil nitrogen (N) status (0.54% and 0.37%) in the UK. After one month of acclimation to ambient summer temperature and precipitation, five replicate cores of each treatment were subjected to three months of experimental warming, drought and supplemental precipitation, based on the projected regional summer climate by the end of the 21st Century, in a fully factorial design. NEE and DOC flux were measured throughout the experimental duration, alongside other environmental variables including soil temperature and moisture. Plant biomass and MBC were determined at the end of the experiment. Results showed that warming plus drought resulted in a significant decline in belowground plant biomass (-29 to -37%), aboveground plant biomass (-35 to -77%) and NEE (-13 to -29%), regardless of the N status of the soil. Supplemental precipitation could not reverse the negative effects of warming on the net ecosystem C uptake and plant biomass production. This was attributed to physiological stress imposed by warming which suggests that future summer climate will reduce the C sink capacity of the grasslands. Due to the low moisture retention observed in this study, and to verify our findings, it is recommended that future experiments aimed at measuring soil C dynamics under climate change should be carried out under field conditions. Longer term experiments are recommended to account for seasonal and annual variability, and adaptive changes in biota. Copyright © 2018 Elsevier B.V. All rights reserved.

Comparative genomic analysis of the PKS genes in five species and expression analysis in upland cotton

PubMed Central

Cheng, Xi; Wang, Yanan; Abdullah, Muhammad; Li, Manli; Li, Dahui; Gao, Junshan

2017-01-01

Plant type III polyketide synthase (PKS) can catalyse the formation of a series of secondary metabolites with different structures and different biological functions; the enzyme plays an important role in plant growth, development and resistance to stress. At present, the PKS gene has been identified and studied in a variety of plants. Here, we identified 11 PKS genes from upland cotton (Gossypium hirsutum) and compared them with 41 PKS genes in Populus tremula, Vitis vinifera, Malus domestica and Arabidopsis thaliana. According to the phylogenetic tree, a total of 52 PKS genes can be divided into four subfamilies (I–IV). The analysis of gene structures and conserved motifs revealed that most of the PKS genes were composed of two exons and one intron and there are two characteristic conserved domains (Chal_sti_synt_N and Chal_sti_synt_C) of the PKS gene family. In our study of the five species, gene duplication was found in addition to Arabidopsis thaliana and we determined that purifying selection has been of great significance in maintaining the function of PKS gene family. From qRT-PCR analysis and a combination of the role of the accumulation of proanthocyanidins (PAs) in brown cotton fibers, we concluded that five PKS genes are candidate genes involved in brown cotton fiber pigment synthesis. These results are important for the further study of brown cotton PKS genes. It not only reveals the relationship between PKS gene family and pigment in brown cotton, but also creates conditions for improving the quality of brown cotton fiber. PMID:29104824

Hydrology, vegetation, and soils of four north Florida River flood plains with an evaluation of state and federal wetland determinations

USGS Publications Warehouse

Light, H.M.; Darst, M.R.; MacLaughlin, M.T.; Sprecher, S.W.

1993-01-01

A study of hydrologic conditions, vegetation, and soils was made in wetland forests of four north Florida streams from 1987 to 1990. The study was conducted by the U.S. Geological Survey in cooperation with the Florida Department of Environmental Regulation to support State and Federal efforts to improve wetland delineation methodology in flood plains. Plant communities and soils were described and related to topographic position and long-term hydrologic conditions at 10 study plots located on 4 streams. Detailed appendixes give average duration, frequency, and depth of flooding; canopy, subcanopy, and ground-cover vegetation; and taxonomic classification, series, and profile descriptions of soils for each plot. Topographic relief, range in stage, and depth of flooding were greatest on the alluvial flood plain of the Ochlockonee River, the largest of the four streams. Soils were silty in the lower elevations of the flood plain, and tree communities were distinctly different in each topographic zone. The Aucilla River flood plain was dominated by levees and terraces with very few depressions or low backwater areas. Oaks dominated the canopy of both lower and upper terraces of the Aucilla flood plain. Telogia Creek is a blackwater stream that is a major tributary of the Ochlockonee River. Its low, wet flood plain was dominated by Wyssa ogeche (Ogeechee tupelo) trees, had soils with mucky horizons, and was inundated by frequent floods of very short duration. The St. Marks River, a spring-fed stream with high base flow, had the least topographic relief and lowest range in stage of the four streams. St. Marks soils had a higher clay content than the other streams, and limestone bedrock was relatively close to the surface. Wetland determinations of the study plots based on State and Federal regulatory criteria were evaluated. Most State and Federal wetland determinations are based primarily on vegetation and soil characteristics because hydrologic records are usually not available. In this study, plots were located near long-term gaging stations, thus wetland determinations based on plant and soil characteristics could be evaluated at sites where long-term hydrologic conditions were known. Inconsistencies among hydrology, vegetation, and soil determinations were greatest on levee communities of the Ochlockonee and Aucilla River flood plains. Duration of average annual longest flood was almost 2 weeks for both plots. The wetland species list currently used (1991) by the State lacks many ground-cover species common to forested flood plains of north Florida rivers. There were 102 ground-cover species considered upland plants by the State that were present on the nine annually flooded plots of this study. Among them were 34 species that grew in areas continuously flooded for an average of 5 weeks or more each year. Common flood-plain species considered upland plants by the State were: Hypoxis leptocarpa (yellow star-grass), and two woody vines, Brunnichia ovata (ladies' eardrops) and Campsis radicans (trumpet-creeper), which were common in areas flooded continuously for 6 to 9 weeks a year; Sebastiania fruticosa (Sebastian-bush), Chasmanthium laxum (spikegrass), and Panicum dichotomum (panic grass), which typically grew in areas flooded an average of 2 to 3 weeks or more per year; Vitis rotundifolia (muscadine) and Toxicodendron radicans (poison-ivy), usually occurring in areas flooded an average of 1 to 2 weeks a year; and Quercus virginiana (live oak) present most often in areas flooded approximately 1 week a year. Federal wetland regulations (1989) limited wetland jurisdiction to only those areas that are inundated or saturated during the growing season. However, year-round hydrologic records were chosen in this report to describe the influence of hydrology on vegetation, because saturation, inundation, or flowing water can have a variety of both beneficial and adverse effects on flood-plain vegetation at any time of the

Groundwater connectivity of upland-embedded wetlands in the Prairie Pothole Region

USGS Publications Warehouse

Neff, Brian; Rosenberry, Donald O.

2018-01-01

Groundwater connections from upland-embedded wetlands to downstream waterbodies remain poorly understood. In principle, water from upland-embedded wetlands situated high in a landscape should flow via groundwater to waterbodies situated lower in the landscape. However, the degree of groundwater connectivity varies across systems due to factors such as geologic setting, hydrologic conditions, and topography. We use numerical models to evaluate the conditions suitable for groundwater connectivity between upland-embedded wetlands and downstream waterbodies in the prairie pothole region of North Dakota (USA). Results show groundwater connectivity between upland-embedded wetlands and other waterbodies is restricted when these wetlands are surrounded by a mounding water table. However, connectivity exists among adjacent upland-embedded wetlands where water–table mounds do not form. In addition, the presence of sand layers greatly facilitates groundwater connectivity of upland-embedded wetlands. Anisotropy can facilitate connectivity via groundwater flow, but only if it becomes unrealistically large. These findings help consolidate previously divergent views on the significance of local and regional groundwater flow in the prairie pothole region.

The effect of wildfire and clear-cutting on above-ground biomass, foliar C to N ratios and fiber content throughout succession: Implications for forage quality in woodland caribou (Rangifer tarandus caribou)

NASA Astrophysics Data System (ADS)

Mallon, E. E.; Turetsky, M.; Thompson, I.; Noland, T. L.; Wiebe, P.

2013-12-01

Disturbance is known to play an important role in maintaining the productivity and biodiversity of boreal forest ecosystems. Moderate to low frequency disturbance is responsible for regeneration opportunities creating a mosaic of habitats and successional trajectories. However, large-scale deforestation and increasing wildfire frequencies exacerbate habitat loss and influence biogeochemical cycles. This has raised concern about the quality of the under-story vegetation post-disturbance and whether this may impact herbivores, especially those vulnerable to change. Forest-dwelling caribou (Rangifer tarandus caribou) are declining in several regions of Canada and are currently listed as a species at risk by COSEWIC. Predation and landscape alteration are viewed as the two main threats to woodland caribou. This has resulted in caribou utilizing low productivity peatlands as refuge and the impact of this habitat selection on their diet quality is not well understood. Therefore there are two themes in the study, 1) Forage quantity: above-ground biomass and productivity and 2) Forage quality: foliar N and C to N ratios and % fiber. The themes are addressed in three questions: 1) How does forage quantity and quality vary between upland forests and peatlands? 2) How does wildfire affect the availability and nutritional quality of forage items? 3) How does forage quality vary between sites recovering from wildfire versus timber harvest? Research sites were located in the Auden region north of Geraldton, ON. This landscape was chosen because it is known woodland caribou habitat and has thorough wildfire and silviculture data from the past 7 decades. Plant diversity, above-ground biomass, vascular green area and seasonal foliar fiber and C to N ratios were collected across a matrix of sites representing a chronosequence of time since disturbance in upland forests and peatlands. Preliminary findings revealed productivity peaked in early age stands (0-30 yrs) and biomass peaked in late age stands (71+ yrs). Furthermore the peatlands were found to have greater overall biomass and productivity than the uplands. C to N ratios from summer foliar samples varied across plant functional type with lichen and mosses had the highest C to N ratios and deciduous trees, shrubs and forbs had the lowest ratios. C to N ratios from spring foliar samples also varied across plant functional type in a similar manner and also varied between uplands and peatlands and by age class. This suggests drainage class and stand age but not disturbance type affects the amount and quality of forage within terrestrial ecosystems. Our intention is to assess forage value of abundant species to help understand diet choices, possibly attributable to acquisition of forage low in C and high in N. This, in combination with biomass availability and productivity data, will be important for understanding the mechanisms contributing to caribou decline and for assessing adaptive forest management options under North American conservation initiatives.

Using LiDAR and quickbird data to model plant production and quantify uncertainties associated with wetland detection and land cover generalizations

USGS Publications Warehouse

Cook, B.D.; Bolstad, P.V.; Naesset, E.; Anderson, R. Scott; Garrigues, S.; Morisette, J.T.; Nickeson, J.; Davis, K.J.

2009-01-01

Spatiotemporal data from satellite remote sensing and surface meteorology networks have made it possible to continuously monitor global plant production, and to identify global trends associated with land cover/use and climate change. Gross primary production (GPP) and net primary production (NPP) are routinely derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) onboard satellites Terra and Aqua, and estimates generally agree with independent measurements at validation sites across the globe. However, the accuracy of GPP and NPP estimates in some regions may be limited by the quality of model input variables and heterogeneity at fine spatial scales. We developed new methods for deriving model inputs (i.e., land cover, leaf area, and photosynthetically active radiation absorbed by plant canopies) from airborne laser altimetry (LiDAR) and Quickbird multispectral data at resolutions ranging from about 30??m to 1??km. In addition, LiDAR-derived biomass was used as a means for computing carbon-use efficiency. Spatial variables were used with temporal data from ground-based monitoring stations to compute a six-year GPP and NPP time series for a 3600??ha study site in the Great Lakes region of North America. Model results compared favorably with independent observations from a 400??m flux tower and a process-based ecosystem model (BIOME-BGC), but only after removing vapor pressure deficit as a constraint on photosynthesis from the MODIS global algorithm. Fine-resolution inputs captured more of the spatial variability, but estimates were similar to coarse-resolution data when integrated across the entire landscape. Failure to account for wetlands had little impact on landscape-scale estimates, because vegetation structure, composition, and conversion efficiencies were similar to upland plant communities. Plant productivity estimates were noticeably improved using LiDAR-derived variables, while uncertainties associated with land cover generalizations and wetlands in this largely forested landscape were considered less important.

Using LIDAR and Quickbird Data to Model Plant Production and Quantify Uncertainties Associated with Wetland Detection and Land Cover Generalizations

NASA Technical Reports Server (NTRS)

Cook, Bruce D.; Bolstad, Paul V.; Naesset, Erik; Anderson, Ryan S.; Garrigues, Sebastian; Morisette, Jeffrey T.; Nickeson, Jaime; Davis, Kenneth J.

2009-01-01

Spatiotemporal data from satellite remote sensing and surface meteorology networks have made it possible to continuously monitor global plant production, and to identify global trends associated with land cover/use and climate change. Gross primary production (GPP) and net primary production (NPP) are routinely derived from the MOderate Resolution Imaging Spectroradiometer (MODIS) onboard satellites Terra and Aqua, and estimates generally agree with independent measurements at validation sites across the globe. However, the accuracy of GPP and NPP estimates in some regions may be limited by the quality of model input variables and heterogeneity at fine spatial scales. We developed new methods for deriving model inputs (i.e., land cover, leaf area, and photosynthetically active radiation absorbed by plant canopies) from airborne laser altimetry (LiDAR) and Quickbird multispectral data at resolutions ranging from about 30 m to 1 km. In addition, LiDAR-derived biomass was used as a means for computing carbon-use efficiency. Spatial variables were used with temporal data from ground-based monitoring stations to compute a six-year GPP and NPP time series for a 3600 ha study site in the Great Lakes region of North America. Model results compared favorably with independent observations from a 400 m flux tower and a process-based ecosystem model (BIOME-BGC), but only after removing vapor pressure deficit as a constraint on photosynthesis from the MODIS global algorithm. Fine resolution inputs captured more of the spatial variability, but estimates were similar to coarse-resolution data when integrated across the entire vegetation structure, composition, and conversion efficiencies were similar to upland plant communities. Plant productivity estimates were noticeably improved using LiDAR-derived variables, while uncertainties associated with land cover generalizations and wetlands in this largely forested landscape were considered less important.

Development of a Site Comparison Index: Southeast Upland Forests

DTIC Science & Technology

2007-05-01

was recorded to 0.1 cm, and only individual trees with a DBH =/> 5 cm were tallied. Pine snags and deciduous snags were also measured. Forty-three... tree species (plus Pine Snags and Deciduous Snags) represent- ing 7031 individuals were identified at the 40 sites, ranging from 1433 Loblolly Pines...of 40 sites. Based on basal areas of 24 tree species (N=6903), pine and deciduous snags. Table 1. Ten forest communities independently

Installation Restoration Program Records Search for George Air Force Base, California

DTIC Science & Technology

1982-06-01

located in the Mojave Desert. The climate is arid with long hot summers and short cool winters. The mean 3relative humidity ranges from 27 percent in...abitat Native plant and animal comunities on base reflect the dry climatic conditions of an upland desert region. Along the eastern border of the bas...soil conditions because of a low ground- water table and the dry climatic conditions. While native systems are disrupted in the immediate vicinity of

Dredging Research: Information from the Engineer Research and Development Center. Volume 7, Number 1. Corps Education Center a Big Success

DTIC Science & Technology

2004-03-01

likeli- hood of adverse effects. UDMEED contains ecotoxico - logical and reference data relevant to assessing the potential for impacts of concern...The effects data have been translated into ecotoxico - logical endpoints, such as “No Observed Adverse Ecological Effect Level (NOAEL),” “Lethal...ited in an upland situation, several broad taxonomic categories, and various contaminants (e.g., bio- accumulation and plants and metals ; or toxicity

Installation Restoration Program. Phase I. Records Search Columbus Air force Base, Mississippi.

DTIC Science & Technology

1985-04-01

with the river flood plains and pine plantations on drier upland areas. Loblolly pine ( Pinus taeda) is the dominant planted pine and is used for pulp...Maintenance MCL maximum contaminant level Methyl ethyl ketone A solvent used in paint thinner, stripper, and a (MEK) wide variety of industrial...l milligrams per liter A-3 Methyl isobutyl A solvent used in paint stripper, thinner, and a - ketone (MIBK) wide variety of industrial applications

Rice leaf growth and water potential are resilient to evaporative demand and soil water deficit once the effects of root system are neutralized.

PubMed

Parent, Boris; Suard, Benoît; Serraj, Rachid; Tardieu, François

2010-08-01

Rice is known to be sensitive to soil water deficit and evaporative demand, with a greatest sensitivity of lowland-adapted genotypes. We have analysed the responses of plant water relations and of leaf elongation rate (LER) to soil water status and evaporative demand in seven rice genotypes belonging to different species, subspecies, either upland- or lowland-adapted. In the considered range of soil water potential (0 to -0.6 MPa), stomatal conductance was controlled in such a way that the daytime leaf water potential was similar in well-watered, droughted or flooded conditions (isohydric behaviour). A low sensitivity of LER to evaporative demand was observed in the same three conditions, with small differences between genotypes and lower sensitivity than in maize. The sensitivity of LER to soil water deficit was similar to that of maize. A tendency towards lower sensitivities was observed in upland than lowland genotypes but with smaller differences than expected. We conclude that leaf water status and leaf elongation of rice are not particularly sensitive to water deficit. The main origin of drought sensitivity in rice may be its poor root system, whose effect was alleviated in the study presented here by growing plants in pots whose soil was entirely colonized by roots of all genotypes.

Developing an ecosystem perspective from experimental monitoring programs: II. Ecophysiological responses of a rare geothermal grass to soil water.

PubMed

Pavlik, B M

2001-08-01

Measurements of xylem water potential, leaf conductance, and leaf pressure-volume characteristics on the geothermal endemic Dichanthelium lanuginosum var. thermale (DILA) were used to delineate operational ranges during wet and dry years and among several microsites at Little Geysers, Sonoma County, California, USA. Plants seldom experienced water potentials more negative that -1.5 MPa. Other nongeothermal, widespread species experienced the lower water potentials typical of chaparral and woodland plants. DILA was able to effectively utilize geothermal water while the widespread species could not and was able to keep stomata open during most of the year. There was evidence to suggest that DILA had some ability to acclimate with significant shifts in Pio and psio during the dry 1994 summer, especially in the upland microhabitat. Nevertheless, minimum leaf turgor values in the upland came very close to, or dropped below, the 0.2-0.3 MPa threshold thought necessary to maintain stomatal opening and photosynthesis. DILA thus depends upon the unique water status of fumarole soils in the vicinity of the Little Geysers to persist in an otherwise lethal regional mosaic of climate, soil, and vegetation. The physiological data were used to derive reference ranges for subsequent monitoring of DILA at Little Geysers. Such ranges are required to determine the future impact, if any, of geothermal development on the persistence of this rare grass and its complex ecosystem.

The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum)

DOE PAGES

Milano, E. R.; Lowry, D. B.; Juenger, T. E.

2016-09-09

The evolution of locally adapted ecotypes is a common phenomenon that generates diversity within plant species. However, we know surprisingly little about the genetic mechanisms underlying the locally adapted traits involved in ecotype formation. The genetic architecture underlying locally adapted traits dictates how an organism will respond to environmental selection pressures, and has major implications for evolutionary ecology, conservation, and crop breeding. To understand the genetic architecture underlying the divergence of switchgrass (Panicum virgatum) ecotypes, we constructed a genetic mapping population through a four-way outbred cross between two northern upland and two southern lowland accessions. Trait segregation in this mappingmore » population was largely consistent with multiple independent loci controlling the suite of traits that characterizes ecotype divergence. We assembled a joint linkage map using ddRADseq, and mapped quantitative trait loci (QTL) for traits that are divergent between ecotypes, including flowering time, plant size, physiological processes, and disease resistance. Overall, we found that most QTL had small to intermediate effects. While we identified colocalizing QTL for multiple traits, we did not find any large-effect QTL that clearly controlled multiple traits through pleiotropy or tight physical linkage. These results indicate that ecologically important traits in switchgrass have a complex genetic basis, and that similar loci may underlie divergence across the geographic range of the ecotypes.« less

The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Milano, E. R.; Lowry, D. B.; Juenger, T. E.

The evolution of locally adapted ecotypes is a common phenomenon that generates diversity within plant species. However, we know surprisingly little about the genetic mechanisms underlying the locally adapted traits involved in ecotype formation. The genetic architecture underlying locally adapted traits dictates how an organism will respond to environmental selection pressures, and has major implications for evolutionary ecology, conservation, and crop breeding. To understand the genetic architecture underlying the divergence of switchgrass (Panicum virgatum) ecotypes, we constructed a genetic mapping population through a four-way outbred cross between two northern upland and two southern lowland accessions. Trait segregation in this mappingmore » population was largely consistent with multiple independent loci controlling the suite of traits that characterizes ecotype divergence. We assembled a joint linkage map using ddRADseq, and mapped quantitative trait loci (QTL) for traits that are divergent between ecotypes, including flowering time, plant size, physiological processes, and disease resistance. Overall, we found that most QTL had small to intermediate effects. While we identified colocalizing QTL for multiple traits, we did not find any large-effect QTL that clearly controlled multiple traits through pleiotropy or tight physical linkage. These results indicate that ecologically important traits in switchgrass have a complex genetic basis, and that similar loci may underlie divergence across the geographic range of the ecotypes.« less

High Temporal and Spatial Variability of Atmospheric-Methane Oxidation in Alpine Glacier Forefield Soils

PubMed Central

Chiri, Eleonora; Nauer, Philipp A.; Rainer, Edda-Marie; Zeyer, Josef

2017-01-01

ABSTRACT Glacier forefield soils can provide a substantial sink for atmospheric CH4, facilitated by aerobic methane-oxidizing bacteria (MOB). However, MOB activity, abundance, and community structure may be affected by soil age, MOB location in different forefield landforms, and temporal fluctuations in soil physical parameters. We assessed the spatial and temporal variability of atmospheric-CH4 oxidation in an Alpine glacier forefield during the snow-free season of 2013. We quantified CH4 flux in soils of increasing age and in different landforms (sandhill, terrace, and floodplain forms) by using soil gas profile and static flux chamber methods. To determine MOB abundance and community structure, we employed pmoA gene-based quantitative PCR and targeted amplicon sequencing. Uptake of CH4 increased in magnitude and decreased in variability with increasing soil age. Sandhill soils exhibited CH4 uptake rates ranging from −3.7 to −0.03 mg CH4 m−2 day−1. Floodplain and terrace soils exhibited lower uptake rates and even intermittent CH4 emissions. Linear mixed-effects models indicated that soil age and landform were the dominating factors shaping CH4 flux, followed by cumulative rainfall (weighted sum ≤4 days prior to sampling). Of 31 MOB operational taxonomic units retrieved, ∼30% were potentially novel, and ∼50% were affiliated with upland soil clusters gamma and alpha. The MOB community structures in floodplain and terrace soils were nearly identical but differed significantly from the highly variable sandhill soil communities. We concluded that soil age and landform modulate the soil CH4 sink strength in glacier forefields and that recent rainfall affects its short-term variability. This should be taken into account when including this environment in future CH4 inventories. IMPORTANCE Oxidation of methane (CH4) in well-drained, “upland” soils is an important mechanism for the removal of this potent greenhouse gas from the atmosphere. It is largely mediated by aerobic, methane-oxidizing bacteria (MOB). Whereas there is abundant information on atmospheric-CH4 oxidation in mature upland soils, little is known about this important function in young, developing soils, such as those found in glacier forefields, where new sediments are continuously exposed to the atmosphere as a result of glacial retreat. In this field-based study, we investigated the spatial and temporal variability of atmospheric-CH4 oxidation and associated MOB communities in Alpine glacier forefield soils, aiming at better understanding the factors that shape the sink for atmospheric CH4 in this young soil ecosystem. This study contributes to the knowledge on the dynamics of atmospheric-CH4 oxidation in developing upland soils and represents a further step toward the inclusion of Alpine glacier forefield soils in global CH4 inventories. PMID:28687652

Do natural disturbances or the forestry practices that follow them convert forests to early-successional communities?

PubMed

Brewer, J Stephen; Bertz, Christine A; Cannon, Jeffery B; Chesser, Jason D; Maynard, Erynn E

2012-03-01

Stand-replacing natural disturbances in mature forests are traditionally seen as events that cause forests to revert to early stages of succession and maintain species diversity. In some cases, however, such transitions could be an artifact of salvage logging and may increase biotic homogenization. We present initial (two-year) results of a study of the effects of tornado damage and the combined effects of tornado damage and salvage logging on environmental conditions and ground cover plant communities in mixed oak-pine forests in north central Mississippi. Plots were established in salvage-logged areas, adjacent to plots established before the storm in unlogged areas, spanning a gradient of storm damage intensity. Vegetation change directly attributable to tornado damage was driven primarily by a reduction in canopy cover but was not consistent with a transition to an early stage of succession. Although we observed post-storm increases of several disturbance indicators (ruderals), we also observed significant increases in the abundance of a few species indicative of upland forests. Increases in flowering were just as likely to occur in species indicative of forests as in species indicative of open woodlands. Few species declined as a result of the tornado, resulting in a net increase in species richness. Ruderals were very abundant in salvage-logged areas, which contained significantly higher amounts of bare ground and greater variance in soil penetrability than did damaged areas that were not logged. In contrast to unlogged areas severely damaged by the tornado, most upland forest indicators were not abundant in logged areas. Several of the forest and open-woodland indicators that showed increased flowering in damaged areas were absent or sparse in logged areas. Species richness was lower in salvage-logged areas than in adjacent damaged areas but similar to that in undamaged areas. These results suggest that salvage logging prevented positive responses of several forest and open-woodland species to tornado damage. Anthropogenic disturbances such as salvage logging appear to differ fundamentally from stand-level canopy-reducing disturbances in their effects on ground cover vegetation in the forests studied here and are perhaps more appropriately viewed as contributing to biotic homogenization than as events that maintain diversity.

Subsoil methanogenesis as source of stem CH4 emission in upland forest trees: preferential CH4 transport via the root system?

NASA Astrophysics Data System (ADS)

Maier, M.; Machacova, K.; Urban, O.; Friederike, L.

2016-12-01

Quantifying and understanding green house gas fluxes in natural soil-plant-atmosphere systems are crucial to predicting global climate change. Wetland species or trees at waterlogged sites are known to emit large amounts of CH4. Yet upland forest soils are regarded as CH4 sinks and tree species like upland European beech (Fagus sylvatica, L.) are assumed not to emit CH4. We studied the soil-atmosphere and stem-atmosphere fluxes of CH4, and soil gas profiles at two upland beech forest sites in Central Europe. Soil was a net CH4 sink at both. Unusually there was one beech tree with substantial CH4 emissions that were higher than the CH4 sink of the soil. The soil gas profile at this tree indicated CH4 production at a soil depth >0.3 m, despite the net uptake of CH4 observed at the soil surface adjacent to the tree. Field soil assessment showed strong redoximorphic color patterns in the adjacent soil. We think that there is a transport link between the soil and stem via the root system representing a preferential transport mechanism for CH4 despite the fact that beech roots usually do not bear aerenchyma. The gas transport process , either via dissolved CH4 in the xylem water or in the root gas phase, is not yet clear. The observed CH4 stem emissions represent an important CH4flux in this ecosystem, und thus should be considered in future research. AcknowledgementThis research was financially supported by the Czech Academy of Sciences and the German Academic Exchange Service within the project "Methane (CH4) and nitrous oxide (N2O) emissions from Fagus sylvatica trees" (DAAD-15-03), National Programme for Sustainability I (LO1415) and project DFG (MA 5826/2-1). We would like to thank Marek Jakubik, Katerina Svobodova, Sinikka Paulus, Ellen Halaburt and Sally Haddad for technical support.

Lack of significant changes in the herpetofauna of Theodore Roosevelt National Park, North Dakota, since the 1920s

USGS Publications Warehouse

Hossack, B.R.; Corn, P.S.; Pilliod, D.S.

2005-01-01

We surveyed 88 upland wetlands and 12 1-km river sections for amphibians in Theodore Roosevelt National Park, North Dakota, during 2001–2002 to gather baseline data for future monitoring efforts and to evaluate changes in the distribution of species. We compared our results to collections of herpetofauna made during 1920–1922, 1954 and 1978–1979. The boreal chorus frog (Pseudacris maculata) was the most common amphibian in upland wetlands, followed by the tiger salamander (Ambystoma tigrinum), Woodhouse's toad (Bufo woodhousii), northern leopard frog (Rana pipiens), plains spadefoot (Spea bombifrons) and the Great Plains toad (B. cognatus). Bufo woodhousii was the only species that bred in the river. Our records for reptiles are less complete than for amphibians but no losses from the community are evident. The herpetofauna in Theodore Roosevelt National Park seems unchanged during at least the last half-century and likely since 1920–1922.

Bacterial and Fungal Communities in a Degraded Ombrotrophic Peatland Undergoing Natural and Managed Re-Vegetation

PubMed Central

Elliott, David R.; Caporn, Simon J. M.; Nwaishi, Felix; Nilsson, R. Henrik; Sen, Robin

2015-01-01

The UK hosts 15–19% of global upland ombrotrophic (rain fed) peatlands that are estimated to store 3.2 billion tonnes of carbon and represent a critical upland habitat with regard to biodiversity and ecosystem services provision. Net production is dependent on an imbalance between growth of peat-forming Sphagnum mosses and microbial decomposition by microorganisms that are limited by cold, acidic, and anaerobic conditions. In the Southern Pennines, land-use change, drainage, and over 200 years of anthropogenic N and heavy metal deposition have contributed to severe peatland degradation manifested as a loss of vegetation leaving bare peat susceptible to erosion and deep gullying. A restoration programme designed to regain peat hydrology, stability and functionality has involved re-vegetation through nurse grass, dwarf shrub and Sphagnum re-introduction. Our aim was to characterise bacterial and fungal communities, via high-throughput rRNA gene sequencing, in the surface acrotelm/mesotelm of degraded bare peat, long-term stable vegetated peat, and natural and managed restorations. Compared to long-term vegetated areas the bare peat microbiome had significantly higher levels of oligotrophic marker phyla (Acidobacteria, Verrucomicrobia, TM6) and lower Bacteroidetes and Actinobacteria, together with much higher ligninolytic Basidiomycota. Fewer distinct microbial sequences and significantly fewer cultivable microbes were detected in bare peat compared to other areas. Microbial community structure was linked to restoration activity and correlated with soil edaphic variables (e.g. moisture and heavy metals). Although rapid community changes were evident following restoration activity, restored bare peat did not approach a similar microbial community structure to non-eroded areas even after 25 years, which may be related to the stabilisation of historic deposited heavy metals pollution in long-term stable areas. These primary findings are discussed in relation to bare peat oligotrophy, re-vegetation recalcitrance, rhizosphere-microbe-soil interactions, C, N and P cycling, trajectory of restoration, and ecosystem service implications for peatland restoration. PMID:25969988

Bacterial and fungal communities in a degraded ombrotrophic peatland undergoing natural and managed re-vegetation.

PubMed

Elliott, David R; Caporn, Simon J M; Nwaishi, Felix; Nilsson, R Henrik; Sen, Robin

2015-01-01

The UK hosts 15-19% of global upland ombrotrophic (rain fed) peatlands that are estimated to store 3.2 billion tonnes of carbon and represent a critical upland habitat with regard to biodiversity and ecosystem services provision. Net production is dependent on an imbalance between growth of peat-forming Sphagnum mosses and microbial decomposition by microorganisms that are limited by cold, acidic, and anaerobic conditions. In the Southern Pennines, land-use change, drainage, and over 200 years of anthropogenic N and heavy metal deposition have contributed to severe peatland degradation manifested as a loss of vegetation leaving bare peat susceptible to erosion and deep gullying. A restoration programme designed to regain peat hydrology, stability and functionality has involved re-vegetation through nurse grass, dwarf shrub and Sphagnum re-introduction. Our aim was to characterise bacterial and fungal communities, via high-throughput rRNA gene sequencing, in the surface acrotelm/mesotelm of degraded bare peat, long-term stable vegetated peat, and natural and managed restorations. Compared to long-term vegetated areas the bare peat microbiome had significantly higher levels of oligotrophic marker phyla (Acidobacteria, Verrucomicrobia, TM6) and lower Bacteroidetes and Actinobacteria, together with much higher ligninolytic Basidiomycota. Fewer distinct microbial sequences and significantly fewer cultivable microbes were detected in bare peat compared to other areas. Microbial community structure was linked to restoration activity and correlated with soil edaphic variables (e.g. moisture and heavy metals). Although rapid community changes were evident following restoration activity, restored bare peat did not approach a similar microbial community structure to non-eroded areas even after 25 years, which may be related to the stabilisation of historic deposited heavy metals pollution in long-term stable areas. These primary findings are discussed in relation to bare peat oligotrophy, re-vegetation recalcitrance, rhizosphere-microbe-soil interactions, C, N and P cycling, trajectory of restoration, and ecosystem service implications for peatland restoration.

Phosphorus content as a function of soil aggregate size and paddy cultivation in highly weathered soils.

PubMed

Li, Baozhen; Ge, Tida; Xiao, Heai; Zhu, Zhenke; Li, Yong; Shibistova, Olga; Liu, Shoulong; Wu, Jinshui; Inubushi, Kazuyuki; Guggenberger, Georg

2016-04-01

Red soils are the major land resource in subtropical and tropical areas and are characterized by low phosphorus (P) availability. To assess the availability of P for plants and the potential stability of P in soil, two pairs of subtropical red soil samples from a paddy field and an adjacent uncultivated upland were collected from Hunan Province, China. Analysis of total P and Olsen P and sequential extraction was used to determine the inorganic and organic P fractions in different aggregate size classes. Our results showed that the soil under paddy cultivation had lower proportions of small aggregates and higher proportions of large aggregates than those from the uncultivated upland soil. The portion of >2-mm-sized aggregates increased by 31 and 20 % at Taoyuan and Guiyang, respectively. The total P and Olsen P contents were 50-150 and 50-300 % higher, respectively, in the paddy soil than those in the upland soil. Higher inorganic and organic P fractions tended to be enriched in both the smallest and largest aggregate size classes compared to the middle size class (0.02-0.2 mm). Furthermore, the proportion of P fractions was higher in smaller aggregate sizes (<2 mm) than in the higher aggregate sizes (>2 mm). In conclusion, soils under paddy cultivation displayed improved soil aggregate structure, altered distribution patterns of P fractions in different aggregate size classes, and to some extent had enhanced labile P pools.

Intra- and inter-annual trends in phosphorus loads and comparison with nitrogen loads to Rehoboth Bay, Delaware (USA)

USGS Publications Warehouse

Volk, J.A.; Scudlark, J.R.; Savidge, K.B.; Andres, A.S.; Stenger, R.J.; Ullman, W.J.

2012-01-01

Monthly phosphorus loads from uplands, atmospheric deposition, and wastewater to Rehoboth Bay (Delaware) were determined from October 1998 to April 2002 to evaluate the relative importance of these three sources of P to the Bay. Loads from a representative subwatershed were determined and used in an areal extrapolation to estimate the upland load from the entire watershed. Soluble reactive phosphorus (SRP) and dissolved organic P (DOP) are the predominant forms of P in baseflow and P loads from the watershed are highest during the summer months. Particulate phosphorus (PP) becomes more significant in stormflow and during periods with more frequent or larger storms. Atmospheric deposition of P is only a minor source of P to Rehoboth Bay. During the period of 1998-2002, wastewater was the dominant external source of P to Rehoboth Bay, often exceeding all other P sources combined. Since 2002, however, due to technical improvements to the sole wastewater plant discharging directly to the Bay, the wastewater contribution of P has been significantly reduced and upland waters are now the principal source of P on an annualized basis. Based on comparison of N and P loads, primary productivity and biomass carrying capacity in Rehoboth Bay should be limited by P availability. However, due to the contrasting spatial and temporal patterns of N and P loading and perhaps internal cycling within the ecosystem, spatial and temporal variations in N and P-limitation within Rehoboth Bay are likely. ?? 2011 Elsevier Ltd.

Differences in Soil Moisture Dynamics across Landforms in South Texas Shrublands

NASA Astrophysics Data System (ADS)

Basant, S.; Wilcox, B. P.

2016-12-01

To understand the water budget for a landscape, it is important to understand the hydrologic differences between different landforms constituting the landscape. The Tamaulipas Biotic Province shrublands in South Texas are characterized by primarily three different landforms - the sandy loam uplands, clay loam intermittent drainage woodlands and closed basin depressions situated in intermittent drainage ways, also referred to as `playas'. Texas A&M's La Copita Research Area (LCRA) in South Texas is a similar landscape where previous research has been limited to soil water movement in uplands and localized water accumulation in the playa landforms. The objective of this research is to understand the hydrology of different landforms and integrate them to complete a landscape scale water budget. Deep soil water movement will be measured at LCRA using neutron moisture gauges. Over 50 access tubes distributed around the site will be used to cover the dominant landforms and vegetation classes. Soil moisture will be measured up to a depth of 2m at different times of the year - so as to capture the variability in response to different rain events and also to different seasons. This will be complimented by over 6 years of run off data collected from controlled plots which will provide an estimate on the amount of overland water exchange from uplands to drainage and playas. The depth-wise soil moisture data collected over time will also be used to estimate the variability in plant water uptake rates across different sites.

High-Density Linkage Map Construction and Mapping of Salt-Tolerant QTLs at Seedling Stage in Upland Cotton Using Genotyping by Sequencing (GBS).

PubMed

Diouf, Latyr; Pan, Zhaoe; He, Shou-Pu; Gong, Wen-Fang; Jia, Yin Hua; Magwanga, Richard Odongo; Romy, Kimbembe Romesh Eric; Or Rashid, Harun; Kirungu, Joy Nyangasi; Du, Xiongming

2017-12-05

Over 6% of agricultural land is affected by salinity. It is becoming obligatory to use saline soils, so growing salt-tolerant plants is a priority. To gain an understanding of the genetic basis of upland cotton tolerance to salinity at seedling stage, an intra-specific cross was developed from CCRI35, tolerant to salinity, as female with Nan Dan (NH), sensitive to salinity, as the male. A genetic map of 5178 SNP markers was developed from 277 F 2:3 populations. The map spanned 4768.098 cM, with an average distance of 0.92 cM. A total of 66 QTLs for 10 traits related to salinity were detected in three environments (0, 110, and 150 mM salt treatment). Only 14 QTLs were consistent, accounting for 2.72% to 9.87% of phenotypic variation. Parental contributions were found to be in the ratio of 3:1, 10 QTLs from the sensitive and four QTLs from the resistant parent. Five QTLs were located in A t and nine QTLs in the D t sub-genome. Moreover, eight clusters were identified, in which 12 putative key genes were found to be related to salinity. The GBS-SNPs-based genetic map developed is the first high-density genetic map that has the potential to provide deeper insights into upland cotton salinity tolerance. The 12 key genes found in this study could be used for QTL fine mapping and cloning for further studies.

Identification of associated SSR markers for yield component and fiber quality traits based on frame map and Upland cotton collections.

PubMed

Qin, Hongde; Chen, Min; Yi, Xianda; Bie, Shu; Zhang, Cheng; Zhang, Youchang; Lan, Jiayang; Meng, Yanyan; Yuan, Youlu; Jiao, Chunhai

2015-01-01

Detecting QTLs (quantitative trait loci) that enhance cotton yield and fiber quality traits and accelerate breeding has been the focus of many cotton breeders. In the present study, 359 SSR (simple sequence repeat) markers were used for the association mapping of 241 Upland cotton collections. A total of 333 markers, representing 733 polymorphic loci, were detected. The average linkage disequilibrium (LD) decay distances were 8.58 cM (r2 > 0.1) and 5.76 cM (r2 > 0.2). 241 collections were arranged into two subgroups using STRUCTURE software. Mixed linear modeling (MLM) methods (with population structure (Q) and relative kinship matrix (K)) were applied to analyze four phenotypic datasets obtained from four environments (two different locations and two years). Forty-six markers associated with the number of bolls per plant (NB), boll weight (BW), lint percentage (LP), fiber length (FL), fiber strength (FS) and fiber micornaire value (FM) were repeatedly detected in at least two environments. Of 46 associated markers, 32 were identified as new association markers, and 14 had been previously reported in the literature. Nine association markers were near QTLs (at a distance of less than 1-2 LD decay on the reference map) that had been previously described. These results provide new useful markers for marker-assisted selection in breeding programs and new insights for understanding the genetic basis of Upland cotton yields and fiber quality traits at the whole-genome level.

Two decades of climate driving the dynamics of functional and taxonomic diversity of a tropical small mammal community in western Mexico

PubMed Central

2017-01-01

Understanding the effects of global climate disruption on biodiversity is important to future conservation efforts. While taxonomic diversity is widely studied, functional diversity of plants, and recently animals, is receiving increasing attention. Most studies of mammals are short-term, focus on temperate habitats, and rely on traits described in the literature rather than generating traits from observations. Unlike previous studies, this long-term field study assessed the factors driving the functional and taxonomic diversity of small-mammal assemblages in dry tropical forests using both traits recorded from literature and a demographic database. We assessed the drivers (abundance and biomass, temperature and rainfall) of taxonomic richness and functional diversity for two rain-driven seasons in two adjacent but distinct forests—upland and lowland (arroyo or riparian) forests. Our analysis found that rainfall, both seasonal and atypical, was the primary factor driving functional and taxonomic diversity of small-mammal assemblages. Functional responses differed between the two types of forests, however, with effects being stronger in the harsher conditions of the upland forests than in the less severe conditions prevailing in the arroyo (riparian) forest. The latter also supports a richer, more diverse, and more stable small-mammal assemblage. These findings highlight the importance of climate to tropical biological diversity, as extreme climate events (hurricanes, droughts and floods) and disruption of rainfall patterns were shown to decrease biodiversity. They also support the need to preserve these habitats, as their high taxonomic diversity and functional redundancy makes them resilient against global climate disruption and local extreme events. Tropical dry forests constitute a potential reservoir for biodiversity and the ecosystem services they provide. Unfortunately, these forests are among the most endangered terrestrial ecosystems because of deforestation and the likely impacts of global climate disruption. PMID:29228017

Effects of Nutrient Enrichment on Microbial Communities and Carbon Cycling in Wetland Soils

NASA Astrophysics Data System (ADS)

Hartman, W.; Neubauer, S. C.; Richardson, C. J.

2013-12-01

Soil microbial communities are responsible for catalyzing biogeochemical transformations underlying critical wetland functions, including cycling of carbon (C) and nutrients, and emissions of greenhouse gasses (GHG). Alteration of nutrient availability in wetland soils may commonly occur as the result of anthropogenic impacts including runoff from human land uses in uplands, alteration of hydrology, and atmospheric deposition. However, the impacts of altered nutrient availability on microbial communities and carbon cycling in wetland soils are poorly understood. To assess these impacts, soil microbial communities and carbon cycling were determined in replicate experimental nutrient addition plots (control, +N, +P, +NP) across several wetland types, including pocosin peat bogs (NC), freshwater tidal marshes (GA), and tidal salt marshes (SC). Microbial communities were determined by pyrosequencing (Roche 454) extracted soil DNA, targeting both bacteria (16S rDNA) and fungi (LSU) at a depth of ca. 1000 sequences per plot. Wetland carbon cycling was evaluated using static chambers to determine soil GHG fluxes, and plant inclusion chambers were used to determine ecosystem C cycling. Soil bacterial communities responded to nutrient addition treatments in freshwater and tidal marshes, while fungal communities did not respond to treatments in any of our sites. We also compared microbial communities to continuous biogeochemical variables in soil, and found that bacterial community composition was correlated only with the content and availability of soil phosphorus, while fungi responded to phosphorus stoichiometry and soil pH. Surprisingly, we did not find a significant effect of our nutrient addition treatments on most metrics of carbon cycling. However, we did find that several metrics of soil carbon cycling appeared much more related to soil phosphorus than to nitrogen or soil carbon pools. Finally, while overall microbial community composition was weakly correlated with soil carbon cycling, our work did identify a small number of individual taxonomic groups that were more strongly correlated with soil CO2 flux. These results suggest that a small number of microbial groups may potentially serve as keystone taxa (and functional indicators), which simple community fingerprinting approaches may overlook. Our results also demonstrate strong effects of soil phosphorus availability on both microbial communities and soil carbon cycling, even in wetland types traditionally considered to be nitrogen limited.

Songbird use of floodplain and upland forests along the Upper Mississippi River corridor during spring migration

USGS Publications Warehouse

Kirsch, Eileen M.; Heglund, Patricia J.; Gray, Brian R.; Mckann, Patrick

2013-01-01

The Upper Mississippi River is thought to provide important stopover habitat for migrating landbirds because of its north-south orientation and floodplain forests. The river flows through the Driftless Area of southwestern Wisconsin and southeastern Minnesota where forests are plentiful, yet forests of the floodplain and Driftless Area uplands differ greatly in landscape setting, tree species composition, and topography. We compared landbird assemblages in these upland and floodplain forests over three springs, 2005–2007, using line-transect surveys at randomly selected areas in and within 16 km of the floodplain. We found more species of both transient and locally breeding migrants per survey in floodplain than in upland forest. Detections of transient neotropical migrants did not differ statistically by habitat. Detections of locally breeding neotropical and temperate-zone migrants and transient temperate-zone migrants were greater in floodplain than in upland forest. Between floodplain and upland forest, assemblages of locally breeding species, including neotropical and temperate-zone migrants (of which some individuals were in transit), differed substantially, but assemblages of transients (including both neotropical and temperate-zone migrants) did not differ as much. Only two species of transient migrants had clear affinities for floodplain forest, and none had an affinity for upland forest, whereas most locally breeding migrants had an affinity for either upland or floodplain forest. Within each spring, however, detections of transient neotropical migrants shifted from being greater in floodplain to greater in upland forests. This intraseasonal shift may be related to the phenology of certain tree species.

Upland hardwood habitat types in southwestern North Dakota

Treesearch

Michele M. Girard; Harold Goetz; Ardell J. Bjugstad

1985-01-01

The Daubenmire habitat type method was used to classify the upland hardwood draws of southwestern North Dakota. Preliminary data analysis indicates there are four upland habitat types: Fraxinus pennsylvanica/Prunus virginiana; F. pnnseanica-Ulmus americana/P. virginiana; Populus...

Deploying a Proximal Sensing Cart to Identify Drought-Adaptive Traits in Upland Cotton for High-Throughput Phenotyping

PubMed Central

Thompson, Alison L.; Thorp, Kelly R.; Conley, Matthew; Andrade-Sanchez, Pedro; Heun, John T.; Dyer, John M.; White, Jeffery W.

2018-01-01

Field-based high-throughput phenotyping is an emerging approach to quantify difficult, time-sensitive plant traits in relevant growing conditions. Proximal sensing carts represent an alternative platform to more costly high-clearance tractors for phenotyping dynamic traits in the field. A proximal sensing cart and specifically a deployment protocol, were developed to phenotype traits related to drought tolerance in the field. The cart-sensor package included an infrared thermometer, ultrasonic transducer, multi-spectral reflectance sensor, weather station, and RGB cameras. The cart deployment protocol was evaluated on 35 upland cotton (Gossypium hirsutum L.) entries grown in 2017 at Maricopa, AZ, United States. Experimental plots were grown under well-watered and water-limited conditions using a (0,1) alpha lattice design and evaluated in June and July. Total collection time of the 0.87 hectare field averaged 2 h and 27 min and produced 50.7 MB and 45.7 GB of data from the sensors and RGB cameras, respectively. Canopy temperature, crop water stress index (CWSI), canopy height, normalized difference vegetative index (NDVI), and leaf area index (LAI) differed among entries and showed an interaction with the water regime (p < 0.05). Broad-sense heritability (H2) estimates ranged from 0.097 to 0.574 across all phenotypes and collections. Canopy cover estimated from RGB images increased with counts of established plants (r = 0.747, p = 0.033). Based on the cart-derived phenotypes, three entries were found to have improved drought-adaptive traits compared to a local adapted cultivar. These results indicate that the deployment protocol developed for the cart and sensor package can measure multiple traits rapidly and accurately to characterize complex plant traits under drought conditions. PMID:29868041

Environmental constraints on the invasion of Triadica sebifera in the eastern United States: an experimental field assessment.

PubMed

Pattison, Robert R; Mack, Richard N

2009-01-01

Identifying the environmental constraints that affect the distribution of an invasive species is fundamental to its effective control. Triadica sebifera (Chinese tallow tree) has invaded the southeastern United States, but its potential for further range and habitat extension has been unresolved. We explored experimentally environmental factors in macro- and microhabitats that affect its persistence at five widely separated sites along the Atlantic seaboard of the United States and at two sites inland; three sites occur well beyond the tree's current range. At each site, seeds and young vegetative plants (0.5-0.65 m tall) of T. sebifera were placed in four microhabitats (closed-canopy upland, closed-canopy lowland, open-canopy upland, and open-canopy lowland). Plant growth, leaf CO(2) assimilation rates, leaf N concentrations and delta(13)C ratios, and stem water potential were measured for two growing seasons. Percent seed germination was consistently higher in open-canopy microhabitats and lowest at northern and inland sites. T. sebifera grew in all open-canopy microhabitats, even 300-500 km beyond its current distribution. Plant growth in closed-canopy habitats was lower, attributable to lower carbon gain per unit leaf area in shaded compared with open-canopy environments, especially at northern and inland sites. Neither competition, other than canopy shade, nor grazing was a key constraint on distribution at any scale. Our results demonstrate that T. sebifera is dispersal limited at landscape scales but limited locally by dispersal and overstory shade; it has yet to occupy the full extent of its new range in North America. Quantifying environmental factors both within and well beyond a species' current range can effectively highlight the limits on its distribution.

Characterization of yields for Pinus taeda genotypes at the half-sib, full-sib, and varietal levels of genetic improvement at two planting densities at age 5 in the upper coastal plain of Georgia

Treesearch

Derek Dougherty; Michael Kane; Robert Teskey; Richard Daniels; Jeff Wright

2012-01-01

Seedling deployment options for the establishment of operational Pinus taeda plantations in the Southeastern U.S. now include half-sib families, full-sib crosses, and varietals. In 2005, a study to evaluate the effects of genotype and density on yield and quality was established on a moderately well-drained upland site in the Upper Coastal Plain in...

Homogenous stands of a wetland grass living in heavy metal polluted wetlands harbor diverse consortia of arbuscular mycorrhizal fungi.

PubMed

Ban, Yihui; Jiang, Yinghe; Li, Meng; Zhang, Xiangling; Zhang, Shiyang; Wu, Yang; Xu, Zhouying

2017-08-01

Over the last three decades, the presence of arbuscular mycorrhizal (AM) fungi in wetland habitats had received increased attention, however, their distribution and functions have not been studied intensively. Using Illumina sequencing technology, we examined the AM fungal communities in roots of Phragmites australis living in 3 heavy metals (HMs) polluted wetlands located in Hubei Province, China. A total of 258 operational taxonomic units (OTUs) from 235,213 sequences affiliated with 6 Glomeromycota families (Glomeraceae, Paraglomeraceae, Claroideoglomeraceae, Ambisporaceae, Archaeosporaceae, and Diversisporaceae) were obtained, with Glomeraceae and Paraglomeraceae being the most and second-most dominant family, respectively. P. australis living in the HMs polluted wetlands harbored diverse AM fungi, including many non-recorded species in upland habitats, and the OTU number which we obtained in this study was higher than most of the records of upland habitats. Dry and waterlogged samples had common OTUs, however, AM fungal communities at different levels in dry and corresponding waterlogged P. australis roots were significant different. In addition, results from this study suggested that a preemption (geometric model) species abundance distributions (SAD), which might due to the distinctive features, e.g. heavy overdominance and difference in the most dominant taxon of each sample, was observed across AM fugal taxa in P. australis roots of the 3 HMs polluted wetlands. Copyright © 2017 Elsevier Ltd. All rights reserved.

High resilience of bryophyte assemblages in streamside compared to upland forests.

PubMed

Dynesius, Mats; Hylander, Kristoffer; Nilsson, Christer

2009-04-01

Landscape heterogeneity causes spatial variation in disturbance regimes and resilience. We asked whether the resilience of bryophyte (liverwort and moss) assemblages to clear-cutting differs between streamside and upland boreal forests in northern Sweden. We hypothesized that bryophyte survival and recolonization rates are higher in streamside areas, thus raising resilience. Conversely, disturbance-intolerant but also invading species should be more frequent here, potentially reducing resilience. In each of 18 sites, we compared two 0.1-ha plots (one streamside and one upland) located in old forest that had never been clear-cut with two matching plots in young stands established after clear-cutting of old forests 30-50 years earlier. We used the magnitude of the difference in assemblages between old and young stands as a measure of change and, therefore, resilience (large difference implying low resilience). Species assemblages were more resilient in streamside than in upland forests. Species composition changed significantly in upland but not in streamside forests. Reductions in species richness were more pronounced in upland forests for total richness and for eight subgroups of species. Two results indicated lower survival/recolonization in upland forests: (1) species had a stronger association with old stands in upland areas, and (2) among species present in both the old streamside and old upland plot in a site, fewer appeared in the young upland than in the corresponding streamside plot. Simultaneously, a higher proportion of species invaded streamside areas; 40 of the 262 species encountered in streamside forests increased their occupancy by two or more sites compared to only two of 134 species in uplands. We suggest that in boreal forests spatial variation in resilience of assemblages of forest organisms intolerant of canopy removal is related to factors governed mainly by topography. More generally, we argue that landscape-scale variation in resilience of assemblages is influenced by spatial variation in (1) stress and resource availability, (2) number of disturbance-intolerant species, and (3) magnitude of environmental changes brought about by a disturbance with a specific intensity. We also suggest that rapid recovery in the short term does not necessarily imply higher long-term ability to return to the pre-disturbance state.

Ecosystem development after mangrove wetland creation: plant-soil change across a 20-year chronosequence

USGS Publications Warehouse

Osland, Michael J.; Spivak, Amanda C.; Nestlerode, Janet A.; Lessmann, Jeannine M.; Almario, Alejandro E.; Heitmuller, Paul T.; Russell, Marc J.; Krauss, Ken W.; Alvarez, Federico; Dantin, Darrin D.; Harvey, James E.; From, Andrew S.; Cormier, Nicole; Stagg, Camille L.

2012-01-01

Mangrove wetland restoration and creation efforts are increasingly proposed as mechanisms to compensate for mangrove wetland losses. However, ecosystem development and functional equivalence in restored and created mangrove wetlands are poorly understood. We compared a 20-year chronosequence of created tidal wetland sites in Tampa Bay, Florida (USA) to natural reference mangrove wetlands. Across the chronosequence, our sites represent the succession from salt marsh to mangrove forest communities. Our results identify important soil and plant structural differences between the created and natural reference wetland sites; however, they also depict a positive developmental trajectory for the created wetland sites that reflects tightly coupled plant-soil development. Because upland soils and/or dredge spoils were used to create the new mangrove habitats, the soils at younger created sites and at lower depths (10-30 cm) had higher bulk densities, higher sand content, lower soil organic matter (SOM), lower total carbon (TC), and lower total nitrogen (TN) than did natural reference wetland soils. However, in the upper soil layer (0-10 cm), SOM, TC, and TN increased with created wetland site age simultaneously with mangrove forest growth. The rate of created wetland soil C accumulation was comparable to literature values for natural mangrove wetlands. Notably, the time to equivalence for the upper soil layer of created mangrove wetlands appears to be faster than for many other wetland ecosystem types. Collectively, our findings characterize the rate and trajectory of above- and below-ground changes associated with ecosystem development in created mangrove wetlands; this is valuable information for environmental managers planning to sustain existing mangrove wetlands or mitigate for mangrove wetland losses.

Oak-black bear relationships in southeastern uplands

USGS Publications Warehouse

Clark, Joseph D.; Spetich, Martin A.

2004-01-01

Bears (Ursus americanus) primarily occur in upland habitats in the Southeast because uplands were the last to be developed for agriculture and were more likely to become publicly owned. National parks and forests created in the early to mid-1900s served as sources to supply surrounding uplands with bears. Bears could not survive in southeastern uplands without oak mast. Bear reproductive and mortality rates in the region have been shown to be directly linked with acorn production. Masting is thought to be an adaptation by oaks to satiate predators during good acorn years, thus ensuring that the remainder will germinate. Acorn predator populations, however, cannot respond numerically to increased acorn production because the masting is episodic and synchronous. Consequently, bears have developed physiological, behavioral, and ecological adaptations to cope with such food shortages. Despite such adaptations, upland hardwood forests in the Southeast are of lower quality than they once were. The loss of the American chestnut (Castanea dentata), higrading, and soil degradation have markedly decreased the carrying capacity for bears and other wildlife. Other changes such as recent forest management practices, forest fragmentation, invasion by the gypsy moth (Lymantria dispar), and oak decline threaten to further degrade the capability of southeastern uplands to support bears.

Linking Forests and Fish: The Relationship Between Productivities of Salmonids and Forest Stands in Northern California

NASA Astrophysics Data System (ADS)

Wilzbach, P.; Frazey, S.

2005-05-01

Productivities of resident salmonid populations, upland, and riparian areas in 25 small watersheds of coastal northern California were estimated and compared to determine if: 1) upland site productivity predicted riparian site productivity; 2) either upland or riparian site productivity predicted salmonid productivity; and 3) other parameters explained more of the variance in salmonid productivity than upland or riparian site productivity. Salmonid productivity was indexed by total salmonid biomass, length of age 1 fish, and percent habitat saturation. Upland and riparian site productivities were estimated using site indices for redwood (Sequoia sempervirens) and red alder (Alnus rubra), respectively. Upland and riparian site indices were correlated, but neither factor contributed to the best approximating models of salmonid biomass or fish length at age one. Salmonid biomass was best described by a positive relationship with drainage area, and length at age was best described by a positive relationship with percent of riparian hardwoods. Percent habitat saturation was not well described by any of the models constructed. Lack of a relationship between upland conifer and salmonid productivity suggests that management of land for timber productivity and component streams for salmonid production in these sites will require separate, albeit integrated, strategies.

Design, construction and performance of an experimental watershed to support a fen peatland for mine landscape reclamation

NASA Astrophysics Data System (ADS)

Price, J. S.; Petrone, R. M.; Strack, M.; Cooper, D. J.

2017-12-01

In the Alberta oil sands region, fen peatlands comprised 50% of the boreal landscape. Oil sands mining has stripped over 800 km2 of land surface to access bitumen, necessitating landscape reclamation to re-establish functional wetlands. Fens are peat-dominated wetlands that commonly rely on groundwater to supplement their water budget and deliver dissolved solutes that impart a distinct geochemistry, hence vegetation community. A numerical model was used to test the concept and guide selection of earth materials and system geometry. The goal was to maintain the placed peat in a sufficiently wet condition to support wetland plants and become a net carbon sink, in this sub-humid climate. The 32.1 ha Nikanotee Fen Watershed comprises a 7.7 ha upland, that was designed to recharge sufficient water, and deliver it to the 2.9 ha fen via groundwater flow. These features are surrounded by other reclaimed slopes designed to store water, rather than deliver it downslope. Four years of monitoring since construction show the fen maintains a high water table, and the peatland has become a strong carbon sink, even though the hydrological performance of construction materials varied substantially from what was anticipated (lower hydraulic conductivity). However, solutes associated with the tailings sand used in construction are moving towards the fen, and are expected to influence the future vegetation community and system biogeochemistry. One of the biggest uncertainties is the changing performance of soils and vegetation as they develop.

Storm flow from dual-use watersheds in south-western Wisconsin.

Treesearch

Richard S. Sartz

1971-01-01

Compares storm flow from upland fields with outflow at the bottom of wooded slopes below. In general, larger upland flows produced larger lower station flows. Lower station flow as a percentage of upland runoff for large storms ranged from 56 to 94.

Biochar and Glomus caledonium Influence Cd Accumulation of Upland Kangkong (Ipomoea aquatica Forsk.) Intercropped with Alfred Stonecrop (Sedum alfredii Hance)

NASA Astrophysics Data System (ADS)

Hu, Junli; Wu, Fuyong; Wu, Shengchun; Lam, Cheung Lung; Lin, Xiangui; Wong, Ming Hung

2014-04-01

Both biochar application and mycorrhizal inoculation have been proposed to improve plant growth and alter bioaccumulation of toxic metals. A greenhouse pot trial was conducted to investigate growth and Cd accumulation of upland kangkong (Ipomoea aquatica Forsk.) intercropped with Alfred stonecrop (Sedum alfredii Hance) in a Cd-contaminated soil inoculated with Glomus caledonium and/or applied with biochar. Compared with the monocultural control, intercropping with stonecrop (IS) decreased kangkong Cd acquisition via rhizosphere competition, and also decreased kangkong yield. Gc inoculation (+M) accelerated growth and Cd acquisition of stonecrop, and hence resulted in further decreases in kangkong Cd acquisition. Regardless of IS and +M, biochar addition (+B) increased kangkong yield via elevating soil available P, and decreased soil Cd phytoavailability and kangkong Cd concentration via increasing soil pH. Compared with the control, the treatment of IS + M + B had a substantially higher kangkong yield (+25.5%) with a lower Cd concentration (-62.7%). Gc generated additive effects on soil alkalinization and Cd stabilization to biochar, causing lower DTPA-extractable (phytoavailable) Cd concentrations and post-harvest transfer risks.

Seasat synthetic aperture radar /SAR/ response to lowland vegetation types in eastern Maryland and Virginia

NASA Technical Reports Server (NTRS)

Krohn, M. D.; Milton, N. M.; Segal, D. B.

1983-01-01

Examination of Seasat SAR images of eastern Maryland and Virginia reveals botanical distinctions between vegetated lowland areas and adjacent upland areas. Radar returns from the lowland areas can be either brighter or darker than returns from the upland forests. Scattering models and scatterometer measurements predict an increase of 6 dB in backscatter from vegetation over standing water. This agrees with the 30-digital number (DN) increase observed in the digital Seasat data. The brightest areas in the Chickahominy, Virginia, drainage, containing P. virginica about 0.4 m high, contrast with the brightest areas in the Blackwater, Maryland, marshes, which contain mature loblolly pine in standing water. The darkest vegetated area in the Chickahominy drainage contains a forest of Nyssa aquatica (water tupelo) about 18 m high, while the darkest vegetated area in the Blackwater marshes contains the marsh plant Spartina alterniflora, 0.3 m high. The density, morphology, and relative geometry of the lowland vegetation with respect to standing water can all affect the strength of the return L band signal.

Correlations and path analysis among agronomic and technological traits of upland cotton.

PubMed

Farias, F J C; Carvalho, L P; Silva Filho, J L; Teodoro, P E

2016-08-12

To date, path analysis has been used with the aim of breeding different cultures. However, for cotton, there have been few studies using this analysis, and all of these have used fiber productivity as the primary dependent variable. Therefore, the aim of the present study was to identify agronomic and technological properties that can be used as criteria for direct and indirect phenotypes in selecting cotton genotypes with better fibers. We evaluated 16 upland cotton genotypes in eight trials conducted during the harvest 2008/2009 in the State of Mato Grosso, using a randomized block design with four replicates. The evaluated traits were: plant height, average boll weight, percentage of fiber, cotton seed yield, fiber length, uniformity of fiber, short fiber index, fiber strength, elongation, maturity of the fibers, micronaire, reflectance, and the degree of yellowing. Phenotypic correlations between the traits and cotton fiber yield (main dependent variable) were unfolded in direct and indirect effects through path analysis. Fiber strength, uniformity of fiber, and reflectance were found to influence fiber length, and therefore, these traits are recommended for both direct and indirect selection of cotton genotypes.

9 CFR 146.3 - Participation.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Participation. (a) Any table-egg producer, raised-for-release upland game bird premises, and raised-for-release waterfowl premises and any commercial upland game bird, commercial waterfowl, meat-type chicken or meat-type... commercial upland game bird, commercial waterfowl, meat-type chicken and/or meat-type turkey flocks that are...

9 CFR 146.3 - Participation.

Code of Federal Regulations, 2010 CFR

2010-01-01

... Participation. (a) Any table-egg producer, raised-for-release upland game bird premises, and raised-for-release waterfowl premises and any commercial upland game bird, commercial waterfowl, meat-type chicken or meat-type... commercial upland game bird, commercial waterfowl, meat-type chicken and/or meat-type turkey flocks that are...

Upland oak ecology symposium: history, current conditions, and sustainability

Treesearch

Martin A. Spetich

2004-01-01

Fifty-one papers address the ecology, history, current conditions, and sustainability of upland oak forests - with emphasis on the Interior Highlands. Subject categories were selected to provide focused coverage of the state-of-the-art research and understanding of upland oak ecology of the region.

[Effects of different amendments on contents of phenolic acids and specific microbes in rhizosphere of Pseudostellaria heterophylla.

PubMed

Wu, Lin Kun; Wu, Hong Miao; Zhu, Quan; Chen, Jun; Wang, Juan Ying; Wu, Yan Hong; Lin, Sheng; Lin, Wen Xiong

2016-11-18

Pseudostellaria heterophylla is a perennial herbaceous plant in the family Caryophyllaceae. The tuberous roots of P. heterophylla are highly valued in traditional Chinese medicine and have a high market demand. However, extended monoculture of P. heterophylla results in a significant decline in the biomass and quality, and escalates disease and pest problems. Therefore, it is important to understand the underlying mechanism and biocontrol methods for consecutive monoculture problems. With "Zheshen 2" as an experimental material, the changes in the contents of main nutrients in soil, phenolic acids and specific microbes under monoculture and different amendments were analyzed by using high performance liquid chromatography (HPLC) and qPCR. The results showed that consecutive monoculture of P. heterophylla led to a decrease in yield by 43.5% while the microbial fertilizer treatment and the paddy-upland rotation could relieve the consecutive monoculture problems. Available nitrogen, available phosphorus, available potassium and total potassium were significantly higher in the consecutively monocultured soils than in the newly planted soils. But consecutive monoculture resulted in soil acidification. HPLC analysis showed that conse-cutive monoculture of this plant did not lead to a consistent accumulation of soil phenolic acids. At middle stage of root expansion and at harvest stage, most of phenolic acids were even higher in the newly planted soils than in the consecutively monocultured soils. Furthermore, qPCR analysis showed that the amounts of three specific pathogens identified previously (i.e. Fusarium oxysporum, Talaromyces helicus, Kosakonia sacchari) were significantly higher in the consecutively monocultured soils than in the newly planted soils. However, the microbial fertilizer treatment and the paddy-upland rotation resulted in a significant decline in the population of these specific pathogens and improved the soil environment. In conclusion, the consecutive monoculture problems of P. heterophylla may be due to the rapid proliferation of host-specific pathogens, rather than the deficiency of soil nutrients and the autotoxicity of allelochemicals in root exudates. The results in this study could provide the theoretical basis to explore the underlying mechanism of replanting disease of P. heterophylla and its biocontrol strategies.

Soil-to-soybean transfer of (99)Tc and its underground distribution in differently contaminated upland soils.

PubMed

Choi, Yong-Ho; Lim, Kwang-Muk; Jun, In; Kim, Byung-Ho; Keum, Dong-Kwon; Kim, In-Gyu

2014-06-01

Pot experiments were performed in a greenhouse to investigate the soil-to-soybean transfer of (99)Tc in two different upland soils labeled with (99)TcO4(-) in two contrasting ways. One was to mix the soil with a (99)TcO4(-) solution 26 d before sowing (pre-sowing deposition: PSD), and the other was to apply the solution onto the soil surface 44 d after sowing (growing-period deposition: GPD). The soil-to-plant transfer was quantified with the transfer factor (TF, ratio of the plant concentration to the average of at-planting and at-harvest soil concentrations) or the aggregated transfer factor (TFag, ratio of the plant concentration to the deposition density). For both the depositions, the transfer of (99)Tc to aerial parts decreased in the order of leaf > stem > pod > seed. TF values (dimensionless) from the PSD were 0.22 and 0.27 (no statistically significant difference) for mature dry seeds in the respective soils, whereas a 600-fold higher value occurred for dry leaves. The post-harvest concentrations of the PSD (99)Tc in the top 20 cm soils as a whole were about half the initial concentrations. Around 25% of the total applied activity remained in the GPD soils after the harvest. The post-harvest depth profiles of the GPD (99)Tc in the two soils showed similar patterns of logarithmic activity decrease with increasing soil depths. Only 1.5-4.3% of the total applied activity was removed through the harvested biomass (seeds, pods and stems), and it was estimated that a great part of the total pant uptake returned to the soil through the fallen leaves. TFag values (m(2) kg(-1)) were about 2-4 times higher for the GPD than for the PSD. This finding and generally high root uptake of Tc may indicate that the use of empirical deposition time-dependent TFag data is particularly important for predicting the plant concentrations of Tc after its growing-period deposition. Copyright © 2014 Elsevier Ltd. All rights reserved.

ERTS-1 data user investigation of wetlands ecology

NASA Technical Reports Server (NTRS)

Anderson, R. R. (Principal Investigator)

1973-01-01

The author has identified the following significant results. ERTS-1 imagery (enlarged to 1:250,000) is an excellent tool by which large area coastal marshland mapping may be undertaken. If states can sacrifice some accuracy (amount unknown at this time) in placing of boundary lines, the technique may be used to do the following: (1) estimate extent of man's impact on marshes by ditching and lagooning and accelerated successional trends; (2) place boundaries between wetland and upland and hence estimate amount of coastal marshland remaining in the state; (3) distinguish among relatively large zones of various plant species including high and low growth S. alterniflora, J. roemerianus, and S. cynosuroides; and (4) estimate marsh plant species productivity when ground based information is available.

Cumberland River and Nashville, TN, USA

NASA Image and Video Library

1973-06-22

SL2-81-198 (22 June 1973) --- Making its way through the rugged Cumberland Plateau, the Cumberland River winds through the city of Nashville in north central Tennessee (36.0N, 87.0W) where the heavily forested upland terrain produces a landscape of rolling hills with elevations up to 1,100 ft. and narrow valleys. Before the advent of modern communications and transportation in this region, widely scattered and isolated communities had little contact with the outside world. Photo credit: NASA

Effects of peatland burning on hydrology, water quality and aquatic ecosystems

NASA Astrophysics Data System (ADS)

Brown, L. E.; Holden, J.; Palmer, S. M.

2009-04-01

Controlled burning is used worldwide for the management of vegetation, yet there is serious concern about the environmental implications of such practices. Across the UK many peatlands are burned to encourage and maintain heather growth. However, detailed evaluations of the costs, benefits and sustainability of burning are hampered by a lack of basic scientific data. This paper will present the outline of a new three year NERC-funded project called EMBER which provides the first co-ordinated evaluation of vegetation burning on peatland hydrological and ecological processes. Case study sites influenced by prescribed burns will be established in internationally important sites in the Peak District and North Pennines, UK. EMBER will increase understanding of the processes linking prescribed peat vegetation fires, hydrology, water quality and stream invertebrate communities in upland peat dominated catchments. Four work packages will aim to: 1) increase understanding of the effects of moorland patch burning on the hydrology and physicochemistry of peat, through examination of changes in soil hydrology and water quality; 2) provide a better understanding of the effects of moorland patch burning on basin runoff quantity and quality, through examination of river flow regimes, suspended sediment concentration and water chemistry; 3) assess the influence of changes in stream hydrology, water quality and sediment fluxes on stream ecosystems through examination of stream invertebrate community biodiversity and fish abundance and 4) gain a more fundamental understanding of some environmental drivers of upland aquatic community response to burning by experimentally manipulating fine sediment flux under controlled conditions using a series of streamside mesocosms. Taken together these packages will provide a holistic patch- to basin-scale evaluation of burning from the perspective of peat hydrology, chemistry, river water quantity and quality, and stream ecosystems, thus providing the balanced knowledge base which is currently lacking for peatlands.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nelson, Jody K.

Remedial investigation and cleanup at the Rocky Flats, Colorado, Site was completed in 2005. Uplands, riparian, and wetland habitat were disturbed during cleanup and closure activities and required extensive revegetation. Unavoidable disturbances to habitat of the Preble's meadow jumping mouse (a federally listed species) and wetlands required consultation with regulatory agencies and mitigation. Mitigation wetlands were constructed in two drainages, and a third developed naturally where a soil borrow area intercepted the groundwater table. During the 50-plus years of site operations, 12 ponds were constructed in three drainages to manage and retain runoff and sewage treatment plant discharges prior tomore » release off site. A batch-release protocol has been used for the past several decades at the terminal ponds, which has affected the riparian communities downstream. To return the hydrologic regime to a more natural flow-through system similar to the pre-industrial-use conditions, seven interior dams (of 12) have been breached, and the remaining five dams are scheduled for breaching between 2011 and 2020. At the breached dams, the former open water areas have transformed to emergent wetlands, and the stream reaches have returned to a flow-through system. Riparian and wetland vegetation has established very well. The valves of the terminal ponds were opened in fall 2011 to begin flow-through operations and provide water to the downstream plant communities while allowing reestablishment of vegetation in the former pond bottoms prior to breaching. A number of challenges and issues were addressed during the revegetation effort. These included reaching an agreement on revegetation goals, addressing poor substrate quality and soil compaction problems, using soil amendments and topsoil, selecting seeds, determining the timing and location of revegetation projects relative to continuing closure activities, weed control, erosion control, revegetation project field oversight, and contractual limitations. A variety of ecological restoration techniques were conducted at the site to meet these challenges. These efforts have resulted in vegetation becoming well established in most locations. (author)« less

76 FR 39185 - 2011-2012 Refuge-Specific Hunting and Sport Fishing Regulations

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-05

... that pertain to migratory game bird hunting, upland game hunting, big game hunting, and sport fishing... wildlife refuges to migratory game bird hunting, upland game hunting, big game hunting, or sport fishing.... Table 1--Changes for 2011-2012 Hunting/Fishing Season Migratory bird Upland game National wildlife...

Projected irrigation requirements for upland crops using soil moisture model under climate change in South Korea

USDA-ARS?s Scientific Manuscript database

An increase in abnormal climate change patterns and unsustainable irrigation in uplands cause drought and affect agricultural water security, crop productivity, and price fluctuations. In this study, we developed a soil moisture model to project irrigation requirements (IR) for upland crops under cl...

Extra long staple upland cotton for the production of superior yarn

USDA-ARS?s Scientific Manuscript database

Cotton, Gossypium spp., fibers are produced primarily by two species, G. hirsutum L., upland, and G. barbadense L., pima, which also is referred to as Extra Long Staple (ELS). The Cotton Improvement Laboratory, Texas AgriLife Research, has developed ELS upland lines through intraspecific crosses and...

CARBON MONOXIDE FLUXES OF DIFFERENT SOIL LAYERS IN UPLAND CANADIAN BOREAL FORESTS

EPA Science Inventory

Dark or low-light carbon monoxide fluxes at upland Canadian boreal forest sites were measured on-site with static chambers and with a laboratory incubation technique using cores from different depths at the same sites. Three different upland black spruce sites, burned in 1987,199...

Upland Oak Ecology Symposium: A Synthesis

Treesearch

Martin A. Spetich

2004-01-01

Recent changes in upland forests of the Interior Highlands have raised the interest of and questions from professional resource specialists and the public. This renewed interest in Interior Highland forests provided researchers an opportunity to update resource specialists on new knowledge regarding upland oak ecology. Symposium presentations and the papers presented...

Upland hardwood silviculture DVD

Treesearch

Claire Payne; Donna Burnett

2010-01-01

The Upland Hardwood Ecology and Management unit of the Southern Research Station offers a week-long course that provides practicing foresters with information about current silvicultural practices and emerging issues based on scientific research and applied techniques that affect managing upland hardwoods. This DVD captures the course that took place in July 2007....

Nitrogen trace gas fluxes from a semiarid subtropical savanna under woody legume encroachment

NASA Astrophysics Data System (ADS)

Soper, Fiona M.; Boutton, Thomas W.; Groffman, Peter M.; Sparks, Jed P.

2016-05-01

Savanna ecosystems are a major source of nitrogen (N) trace gases that influence air quality and climate. These systems are experiencing widespread encroachment by woody plants, frequently associated with large increases in soil N, with no consensus on implications for trace gas emissions. We investigated the impact of encroachment by N-fixing tree Prosopis glandulosa on total reactive N gas flux (Nt = NO + N2O + NOy + NH3) from south Texas savanna soils over 2 years. Contrary to expectations, upland Prosopis groves did not have greater Nt fluxes than adjacent unencroached grasslands. However, abiotic conditions (temperature, rainfall, and topography) were strong drivers. Emissions from moist, low-lying Prosopis playas were up to 3 times higher than from Prosopis uplands. Though NO dominated emissions, NH3 and NOy (non-NO oxidized N) comprised 12-16% of the total summer N flux (up to 7.9 µg N m-2 h-1). Flux responses to soil wetting were temperature dependent for NO, NH3, and NOy: a 15 mm rainfall event increased flux 3-fold to 22-fold after 24 h in summer but had no effect in winter. Repeated soil wetting reduced N flux responses, indicating substrate depletion as a likely control. Rapid (<1 min) increases in NO emissions following wetting of dry soils suggested that abiotic chemodenitrification contributes to pulse emissions. We conclude that temperature and wetting dynamics, rather than encroachment, are primary drivers of N flux from these upland savannas, with implications for future emission patterns under altered precipitation regimes.

Genome-wide association study discovered genetic variation and candidate genes of fibre quality traits in Gossypium hirsutum L.

PubMed

Sun, Zhengwen; Wang, Xingfen; Liu, Zhengwen; Gu, Qishen; Zhang, Yan; Li, Zhikun; Ke, Huifeng; Yang, Jun; Wu, Jinhua; Wu, Liqiang; Zhang, Guiyin; Zhang, Caiying; Ma, Zhiying

2017-08-01

Genetic improvement of fibre quality is one of the main breeding goals for the upland cotton, Gossypium hirsutum, but there are difficulties with precise selection of traits. Therefore, it is important to improve the understanding of the genetic basis of phenotypic variation. In this study, we conducted phenotyping and genetic variation analyses of 719 diverse accessions of upland cotton based on multiple environment tests and a recently developed Cotton 63K Illumina Infinium SNP array and performed a genome-wide association study (GWAS) of fibre quality traits. A total of 10 511 polymorphic SNPs distributed in 26 chromosomes were screened across the cotton germplasms, and forty-six significant SNPs associated with five fibre quality traits were detected. These significant SNPs were scattered over 15 chromosomes and were involved in 612 unique candidate genes, many related to polysaccharide biosynthesis, signal transduction and protein translocation. Two major haplotypes for fibre length and strength were identified on chromosomes Dt11 and At07. Furthermore, by combining GWAS and transcriptome analysis, we identified 163 and 120 fibre developmental genes related to length and strength, respectively, of which a number of novel genes and 19 promising genes were screened. These results provide new insight into the genetic basis of fibre quality in G. hirsutum and provide candidate SNPs and genes to accelerate the improvement of upland cotton. © 2017 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

Comparative transcriptome profiling of upland (VS16) and lowland (AP13) ecotypes of switchgrass.

PubMed

Ayyappan, Vasudevan; Saha, Malay C; Thimmapuram, Jyothi; Sripathi, Venkateswara R; Bhide, Ketaki P; Fiedler, Elizabeth; Hayford, Rita K; Kalavacharla, Venu Kal

2017-01-01

Transcriptomes of two switchgrass genotypes representing the upland and lowland ecotypes will be key tools in switchgrass genome annotation and biotic and abiotic stress functional genomics. Switchgrass (Panicum virgatum L.) is an important bioenergy feedstock for cellulosic ethanol production. We report genome-wide transcriptome profiling of two contrasting tetraploid switchgrass genotypes, VS16 and AP13, representing the upland and lowland ecotypes, respectively. A total of 268 million Illumina short reads (50 nt) were generated, of which, 133 million were obtained in AP13 and the rest 135 million in VS16. More than 90% of these reads were mapped to the switchgrass reference genome (V1.1). We identified 6619 and 5369 differentially expressed genes in VS16 and AP13, respectively. Gene ontology and KEGG pathway analysis identified key genes that regulate important pathways including C4 photosynthesis, photorespiration and phenylpropanoid metabolism. A series of genes (33) involved in photosynthetic pathway were up-regulated in AP13 but only two genes showed higher expression in VS16. We identified three dicarboxylate transporter homologs that were highly expressed in AP13. Additionally, genes that mediate drought, heat, and salinity tolerance were also identified. Vesicular transport proteins, syntaxin and signal recognition particles were seen to be up-regulated in VS16. Analyses of selected genes involved in biosynthesis of secondary metabolites, plant-pathogen interaction, membrane transporters, heat, drought and salinity stress responses confirmed significant variation in the relative expression reflected in RNA-Seq data between VS16 and AP13 genotypes. The phenylpropanoid pathway genes identified here are potential targets for biofuel conversion.

Wrinkle ridge-upland scarp transitions: Implications for the mechanical properties of the deformed materials

NASA Technical Reports Server (NTRS)

Watters, Thomas R.; Tuttle, Michael J.; Simpson, Debra

1991-01-01

Wrinkle ridge-upland scarp transitions are structures that occur at the contact between smooth plains material and highlands or uplands materials on the Moon and Mars. In the smooth plains material the structures have a morphology typical of wrinkle ridges, interpreted to be the result of a combination of folding and thrust faulting. Where the structures extend into the uplands, a distinct change in the morphology occurs. The generally asymmetric cross sectional geometry characteristics of wrinkle ridges becomes that of a one-sided, often lobate scarp. The scarp is indistinguishable from other highland/upland scarps, interpreted to be the result of reverse or thrust faulting. Although these structures are rare, they provide important insight into the mechanical properties of deformed materials. These insights are discussed.

Registration of RMBUP-C4, a random mated population with Gossypium hirsutum L. alleles, introgresssed into Upland cotton germplasm

USDA-ARS?s Scientific Manuscript database

RMBUP-C4 (Random Mated Barbadense Upland Population Cycle 4) (Reg. No. GP_____: PI______) is a unique random mated germplasm population of Upland cotton (Gossypium hirsutum L.) which has introgression of G. barbadense L. alleles. This population involved five cycles of random mating beginning ...

Soil Physicochemical and Biological Properties of Paddy-Upland Rotation: A Review

PubMed Central

Lv, Teng-Fei; Chen, Yong; Westby, Anthony P.; Ren, Wan-Jun

2014-01-01

Paddy-upland rotation is an unavoidable cropping system for Asia to meet the increasing demand for food. The reduction in grain yields has increased the research interest on the soil properties of rice-based cropping systems. Paddy-upland rotation fields are unique from other wetland or upland soils, because they are associated with frequent cycling between wetting and drying under anaerobic and aerobic conditions; such rotations affect the soil C and N cycles, make the chemical speciation and biological effectiveness of soil nutrient elements varied with seasons, increase the diversity of soil organisms, and make the soil physical properties more difficult to analyze. Consequently, maintaining or improving soil quality at a desirable level has become a complicated issue. Therefore, fully understanding the soil characteristics of paddy-upland rotation is necessary for the sustainable development of the system. In this paper, we offer helpful insight into the effect of rice-upland combinations on the soil chemical, physical, and biological properties, which could provide guidance for reasonable cultivation management measures and contribute to the improvement of soil quality and crop yield. PMID:24995366

The Brazilian freshwater wetscape: Changes in tree community diversity and composition on climatic and geographic gradients

PubMed Central

Wittmann, Florian; Marques, Márcia C. M.; Damasceno Júnior, Geraldo; Budke, Jean Carlos; Piedade, Maria T. F.; de Oliveira Wittmann, Astrid; Montero, Juan Carlos; de Assis, Rafael L.; Targhetta, Natália; Parolin, Pia; Junk, Wolfgang J.

2017-01-01

Wetlands harbor an important compliment of regional plant diversity, but in many regions data on wetland diversity and composition is still lacking, thus hindering our understanding of the processes that control it. While patterns of broad-scale terrestrial diversity and composition typically correlate with contemporary climate it is not clear to what extent patterns in wetlands are complimentary, or conflicting. To elucidate this, we consolidate data from wetland forest inventories in Brazil and examine patterns of diversity and composition along temperature and rainfall gradients spanning five biomes. We collated 196 floristic inventories covering an area >220 ha and including >260,000 woody individuals. We detected a total of 2,453 tree species, with the Amazon alone accounting for nearly half. Compositional patterns indicated differences in freshwater wetland floras among Brazilian biomes, although biomes with drier, more seasonal climates tended to have a larger proportion of more widely distributed species. Maximal alpha diversity increased with annual temperature, rainfall, and decreasing seasonality, patterns broadly consistent with upland vegetation communities. However, alpha diversity-climate relationships were only revealed at higher diversity values associated with the uppermost quantiles, and in most sites diversity varied irrespective of climate. Likewise, mean biome-level differences in alpha-diversity were unexpectedly modest, even in comparisons of savanna-area wetlands to those of nearby forested regions. We describe attenuated wetland climate-diversity relationships as a shifting balance of local and regional effects on species recruitment. Locally, excessive waterlogging strongly filters species able to colonize from regional pools. On the other hand, increased water availability can accommodate a rich community of drought-sensitive immigrant species that are able to track buffered wetland microclimates. We argue that environmental conditions in many wetlands are not homogeneous with respect to regional climate, and that responses of wetland tree communities to future climate change may lag behind that of non-wetland, terrestrial habitat. PMID:28394937

The influence of wind farm development on the hydrochemistry and ecology of an upland stream.

PubMed

Millidine, K J; Malcolm, I A; McCartney, A; Laughton, R; Gibbins, C N; Fryer, R J

2015-08-01

Despite perceptions of pristine condition, upland environments are increasingly subject to a range of anthropogenic pressures including air pollution, climate change, land-use change and evolving land management strategies. Although they have received little attention to date, the large-scale development of upland wind farms also has the potential to disturb vegetation and soils, alter hydrology and water quality and, thus, impact freshwater ecosystems. This paper presents the findings of a 5-year study of the impacts of wind farm construction on the freshwater environment. Data on water quality, invertebrate and fish populations were collected for 2 years before construction and for the following 3 years covering the construction period and the initial period of the farm's operation. In contrast to previous studies, the impacts of the wind farm development were assessed for a suite of potentially affected hydrochemical variables using a before-after-control-impact (BACI) analysis that allowed separation of construction effects from spatial and temporal variability in hydroclimatological conditions, thereby providing an improved, more robust evidence base. There was a small but significant negative effect of construction on pH, alkalinity (Alk) and acid neutralising capacity (ANC) in the upper part of the treatment catchment, which was where the wind farm was situated. The effects were more marked under higher flow conditions. It is hypothesised that this reflects changes in hydrological processes with increased near-surface runoff or organic acid mobilisation. There was no indication that either invertebrate community structure or fish densities were impacted by construction and the resulting effects on water quality.

Transitional morphology in west Deuteronilus Mensae, Mars - Implications for modification of the lowland/upland boundary

NASA Technical Reports Server (NTRS)

Parker, Timothy J.; Saunders, R. Stephen; Schneeberger, Dale M.

1989-01-01

The present examination of the west Deuteronilus Mensae region of Mars notes the changes in fretted terrain across the gradational boundary from uplands to lowlands to include a reduction of canyon wall slopes and depths, so that the fretted terrain north of the gradational boundary appears matted, but not obscured. The two process-classes that may account for the lateral overlap are the erosion of stratified upland terrain, and the deposition of plains materials onto the sloping upland margin and fretted terrain. A variety of plains-emplacement mechanisms is considered.

Effects of soils and grazing on breeding birds of uncultivated upland grasslands of the Northern Great Plains

USGS Publications Warehouse

Kantrud, H.A.; Kologiski, R.L.

1982-01-01

The principal use of uncultivated upland grasslands in the northern Great Plains is for livestock production. However, on lands set aside for wildlife or for scientific or recreational use, grazing by livestock may be used as a management measure to enhance populations of game species or to create conditions that increase the diversity of plant or animal species. To determine the effects of grazing on the avifauna of various types of Great Plains grasslands, we conducted bird censuses and plant surveys during 1974-78 on 615 plots of lightly, moderately, or heavily grazed native rangeland.Numbers of horned lark (Eremophila alpestris), western meadowlark (Sturnella neglecta), lark bunting (Calamospiza melanocorys), and chestnut-collared longspur (Calcarius ornatus) accounted for 65-75% of the total bird population, regardless of grazing intensity. For the entire area sampled (600,000 km2), horned lark, western meadowlark, and chestnut-collared longspur were the dominant birds. Major differences in composition of the dominant species and species richness occurred among the major soils. Increased mean annual soil temperature seemingly had a greater negative influence on avian species richness than did decreased soil moisture or organic matter content. Differences in total bird density were not significant among soils and among grazing intensities within most soils. For the area as a whole, light or moderate grazing resulted in increased species richness. Of the 29 species studied, 2 responded significantly to grazing for the area as a whole and 6 others to grazing on the soil in which peak densities occurred. Response of several other species to grazing effects evidently varied among strata.A list of plants with mean cover values of more than 1% in any of the 18 combinations of soils and grazing intensities contained less than 25 species, attesting to the relative simplicity of the grassland vegetation in the northern Great Plains. Agropyron spp. and Bouteloua gracilis were the dominant plants that provided greater than average cover on the best habitat for the most bird species. Optimum habitat for each bird species is given in terms of grazing, soils, and dominant plant species. Increased soil temperature probably had a negative effect on plant species richness, especially among soils with a high organic matter content that supported perennial grasses and other mesophytes.

Modeling Soil Organic Carbon at Regional Scale by Combining Multi-Spectral Images with Laboratory Spectra.

PubMed

Peng, Yi; Xiong, Xiong; Adhikari, Kabindra; Knadel, Maria; Grunwald, Sabine; Greve, Mogens Humlekrog

2015-01-01

There is a great challenge in combining soil proximal spectra and remote sensing spectra to improve the accuracy of soil organic carbon (SOC) models. This is primarily because mixing of spectral data from different sources and technologies to improve soil models is still in its infancy. The first objective of this study was to integrate information of SOC derived from visible near-infrared reflectance (Vis-NIR) spectra in the laboratory with remote sensing (RS) images to improve predictions of topsoil SOC in the Skjern river catchment, Denmark. The second objective was to improve SOC prediction results by separately modeling uplands and wetlands. A total of 328 topsoil samples were collected and analyzed for SOC. Satellite Pour l'Observation de la Terre (SPOT5), Landsat Data Continuity Mission (Landsat 8) images, laboratory Vis-NIR and other ancillary environmental data including terrain parameters and soil maps were compiled to predict topsoil SOC using Cubist regression and Bayesian kriging. The results showed that the model developed from RS data, ancillary environmental data and laboratory spectral data yielded a lower root mean square error (RMSE) (2.8%) and higher R2 (0.59) than the model developed from only RS data and ancillary environmental data (RMSE: 3.6%, R2: 0.46). Plant-available water (PAW) was the most important predictor for all the models because of its close relationship with soil organic matter content. Moreover, vegetation indices, such as the Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI), were very important predictors in SOC spatial models. Furthermore, the 'upland model' was able to more accurately predict SOC compared with the 'upland & wetland model'. However, the separately calibrated 'upland and wetland model' did not improve the prediction accuracy for wetland sites, since it was not possible to adequately discriminate the vegetation in the RS summer images. We conclude that laboratory Vis-NIR spectroscopy adds critical information that significantly improves the prediction accuracy of SOC compared to using RS data alone. We recommend the incorporation of laboratory spectra with RS data and other environmental data to improve soil spatial modeling and digital soil mapping (DSM).

Modeling Soil Organic Carbon at Regional Scale by Combining Multi-Spectral Images with Laboratory Spectra

PubMed Central

Peng, Yi; Xiong, Xiong; Adhikari, Kabindra; Knadel, Maria; Grunwald, Sabine; Greve, Mogens Humlekrog

2015-01-01

There is a great challenge in combining soil proximal spectra and remote sensing spectra to improve the accuracy of soil organic carbon (SOC) models. This is primarily because mixing of spectral data from different sources and technologies to improve soil models is still in its infancy. The first objective of this study was to integrate information of SOC derived from visible near-infrared reflectance (Vis-NIR) spectra in the laboratory with remote sensing (RS) images to improve predictions of topsoil SOC in the Skjern river catchment, Denmark. The second objective was to improve SOC prediction results by separately modeling uplands and wetlands. A total of 328 topsoil samples were collected and analyzed for SOC. Satellite Pour l’Observation de la Terre (SPOT5), Landsat Data Continuity Mission (Landsat 8) images, laboratory Vis-NIR and other ancillary environmental data including terrain parameters and soil maps were compiled to predict topsoil SOC using Cubist regression and Bayesian kriging. The results showed that the model developed from RS data, ancillary environmental data and laboratory spectral data yielded a lower root mean square error (RMSE) (2.8%) and higher R2 (0.59) than the model developed from only RS data and ancillary environmental data (RMSE: 3.6%, R2: 0.46). Plant-available water (PAW) was the most important predictor for all the models because of its close relationship with soil organic matter content. Moreover, vegetation indices, such as the Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI), were very important predictors in SOC spatial models. Furthermore, the ‘upland model’ was able to more accurately predict SOC compared with the ‘upland & wetland model’. However, the separately calibrated ‘upland and wetland model’ did not improve the prediction accuracy for wetland sites, since it was not possible to adequately discriminate the vegetation in the RS summer images. We conclude that laboratory Vis-NIR spectroscopy adds critical information that significantly improves the prediction accuracy of SOC compared to using RS data alone. We recommend the incorporation of laboratory spectra with RS data and other environmental data to improve soil spatial modeling and digital soil mapping (DSM). PMID:26555071

50 CFR 32.67 - Washington.

Code of Federal Regulations, 2012 CFR

2012-10-01

... Refuge A. Migratory Game Bird Hunting. We allow hunting of goose, duck, coot, and snipe on designated... holidays on Marsh Unit 1 and Farm Units 226-227. B. Upland Game Hunting. We allow hunting of upland game... conditions: 1. Conditions A1, A2, and A3 apply. 2. We allow hunting of only upland game birds during State...

50 CFR 32.67 - Washington.

Code of Federal Regulations, 2013 CFR

2013-10-01

... Refuge A. Migratory Game Bird Hunting. We allow hunting of goose, duck, coot, and snipe on designated... holidays on Marsh Unit 1 and Farm Units 226-227. B. Upland Game Hunting. We allow hunting of upland game... conditions: 1. Conditions A1, A2, and A3 apply. 2. We allow hunting of only upland game birds during State...

Breeding birds in riparian and upland dry forests of the Cascade Range

Treesearch

John F. Lehmkuhl; E. Dorsey Burger; Emily K. Drew; John P. Lindsey; Maryellen Haggard; Kent Z. Woodruff

2007-01-01

We quantified breeding bird abundance, diversity, and indicator species in riparian and upland dry forests along six third- to fourth-order streams on the east slope of the Cascade Range, Washington, USA. Upland mesic forest on southerly aspects was dominated by open ponderosa pine (Pinus ponderosa) and dry Douglas-fir (Pseudotsuga menziesii...

Temperature of upland and peatland soils in a north central Minnesota forest

Treesearch

Dale S. Nichols

1998-01-01

Soil temperature strongly influences physical, chemical, and biological activities in soil. However, soil temperature data for forest landscapes are scarce. For 6 yr, weekly soil temperatures were measured at two upland and four peatland sites in north central Minnesota. One upland site supported mature aspen forest, the other supported short grass. One peatland site...

Upland forests of the American/Pacific Islands: research opportunities in Micronesia and American Samoa

Treesearch

Dean S. DeBell; Craig D. Whitesell

1993-01-01

Upland forests of Micronesia and American Samoa can provide many social, ecological, and esthetic benefits for island inhabitants. Substantial upland areas (the majority of acreage on some islands) are now occupied by secondary and grassland/savanna vegetation; such areas represent opportunities for restoration, with both native forest cover and plantations of...

Brood cover and food resources for wild turkeys following silvicultural treatments in mature upland hardwoods

Treesearch

M. McCord; C. Harper; Katie Greenberg

2014-01-01

Closed-canopy, upland hardwood forests with limited understory development provide suboptimal habitat for wild turkey (Meleagris gallopavo) broods and may lead to low recruitment. Various forest management practices have been used to stimulate understory development within upland hardwoods, but evaluation of such practices on cover and food resources for wild turkey...

Waterborne nutrient flow through an upland-peatland watershed in Minnesota

Treesearch

Elon S. Verry; D.R. Timmons

1982-01-01

Water and nutrient flow were measured on a complex upland-peatland watershed in north central Minnesota. Annual water budgets for upland and peatland components and for the total watershed were developed. Nutrient input and output budgets were developed for each component on a seasonal basis, using net precipitation inputs, and an annual nutrient budget was developed...

Soil-site relationships of the upland oaks

Treesearch

Willard H. Carmean

1971-01-01

Site quality for upland oaks can be estimated directly by using site-index curves, or indirect estimations can be made by using soil-site prediction methods. Presently available harmonized site-index curves may not be suitable for all upland oak species, or may not be suitable throughout their range. New stem-analysis data show that different species of oak have...

Genetic effects of nine Gossypium barbadense L. chromosome substitution lines in topcrosses with five elite Upland cotton G. hirsutum L. cultivars

USDA-ARS?s Scientific Manuscript database

Crosses between Gossypium barbadense L. and Upland (G. hirsutum L.) have produced limited success in introgressing fiber quality genes into Upland cotton. Chrosome substitution lines (CSL) have chromosomes or arms from G. barbadense, line 3-79, substituted for the corresponding chromosome or arm in ...

Assessing the feasibility and profitability of cable logging in southern upland hardwood forests

Treesearch

Chris B. LeDoux; Dennis M. May; Tony Johnson; Richard H. Widmann

1995-01-01

Procedures developed to assess available timber supplies from upland hardwood forest statistics reported by the USDA Forest Services' Forest Inventory and Analysis unit were modified to assess the feasibility and profitability of cable logging in southern upland hardwood forests. Depending on the harvest system and yarding distance used, cable logging can be...

Impact of in-woods product merchandizing on profitable logging opportunities in southern upland hardwood forests

Treesearch

Dennis M. May; Chris B. LeDoux; John B. Tansey; Richard Widmann

1994-01-01

Procedures developed to assess available timber supplies from upland hardwood forest statistics reported by the U.S. Department of Agriculture, Forest Service, Forest Inventory and Analysis (FIA) units, were modified to demonstrate the impact of three in-woods product-merchandizing options on profitable logging opportunities in upland hardwood forests in 14 Southern...

Recharge of valley-fill aquifers in the glaciated northeast from upland runoff

USGS Publications Warehouse

Williams, J.H.; Morrissey, D.J.

1996-01-01

Channeled and unchanneled runoff from till-covered bedrock uplands is a major source of recharge to valley-fill aquifers in the glaciated northeastern United States. Streamflow measurements and model simulation of average steady-state conditions indicate that upland runoff accounted for more recharge to two valley-fill aquifers in moderately high topographic-relief settings than did direct infiltration of precipitation. Recharge from upland runoff to a modeled valley-fill aquifer in an area of lower relief was significant but less than that from direct infiltration of precipitation. The amount of upland runoff available for recharging valley-fill aquifers in the glaciated Northeast ranges from about 1.5 to 2.5 cubic feet per second per square mile of drainage area that borders the aquifer. Stream losses from tributaries that drain the uplands commonly range from 0.3 to 1.5 cubic feet per second per 1,000 feet of wetted channel where the tributaries cross alluvial fans in the main valleys. Recharge of valley-fill aquifers from channeled runoff was estimated from measured losses and average runoff rates and was represented in aquifer models as specified fluxes or simulated by head-dependent fluxes with streamflow routing in the model cells that represent the tributary streams. Unchanneled upland runoff, which includes overland and subsurface flow, recharges the valley-fill aquifers at the contact between the aquifer and uplands near the base of the bordering till-covered hillslopes. Recharge from unchanneled runoff was estimated from average runoff rates and the hillslope area that borders the aquifer and was represented as specified fluxes to model-boundary cells along the valley walls.

Vegetation survey of PEN Branch wetlands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

A survey was conducted of vegetation along Pen Branch Creek at Savannah River Site (SRS) in support of K-Reactor restart. Plants were identified to species by overstory, understory, shrub, and groundcover strata. Abundance was also characterized and richness and diversity calculated. Based on woody species basal area, the Pen Branch delta was the most impacted, followed by the sections between the reactor and the delta. Species richness for shrub and groundcover strata were also lowest in the delta. No endangered plant species were found. Three upland pine areas were also sampled. In support of K Reactor restart, this report summarizesmore » a study of the wetland vegetation along Pen Branch. Reactor effluent enters Indian Grove Branch and then flows into Pen Branch and the Pen Branch Delta.« less

Vegetation survey of PEN Branch wetlands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1991-01-01

A survey was conducted of vegetation along Pen Branch Creek at Savannah River Site (SRS) in support of K-Reactor restart. Plants were identified to species by overstory, understory, shrub, and groundcover strata. Abundance was also characterized and richness and diversity calculated. Based on woody species basal area, the Pen Branch delta was the most impacted, followed by the sections between the reactor and the delta. Species richness for shrub and groundcover strata were also lowest in the delta. No endangered plant species were found. Three upland pine areas were also sampled. In support of K Reactor restart, this report summarizesmore » a study of the wetland vegetation along Pen Branch. Reactor effluent enters Indian Grove Branch and then flows into Pen Branch and the Pen Branch Delta.« less

7 CFR 1427.25 - Determination of the prevailing world market price and the adjusted world price for upland cotton.

Code of Federal Regulations, 2012 CFR

2012-01-01

... and the adjusted world price for upland cotton. 1427.25 Section 1427.25 Agriculture Regulations of the..., PURCHASES, AND OTHER OPERATIONS COTTON Nonrecourse Cotton Loan and Loan Deficiency Payments § 1427.25 Determination of the prevailing world market price and the adjusted world price for upland cotton. (a) CCC will...

7 CFR 1427.25 - Determination of the prevailing world market price and the adjusted world price for upland cotton.

Code of Federal Regulations, 2013 CFR

2013-01-01

... and the adjusted world price for upland cotton. 1427.25 Section 1427.25 Agriculture Regulations of the..., PURCHASES, AND OTHER OPERATIONS COTTON Nonrecourse Cotton Loan and Loan Deficiency Payments § 1427.25 Determination of the prevailing world market price and the adjusted world price for upland cotton. (a) CCC will...

7 CFR 1427.25 - Determination of the prevailing world market price and the adjusted world price for upland cotton.

Code of Federal Regulations, 2010 CFR

2010-01-01

... and the adjusted world price for upland cotton. 1427.25 Section 1427.25 Agriculture Regulations of the..., PURCHASES, AND OTHER OPERATIONS COTTON Nonrecourse Cotton Loan and Loan Deficiency Payments § 1427.25 Determination of the prevailing world market price and the adjusted world price for upland cotton. (a) CCC will...

7 CFR 1427.25 - Determination of the prevailing world market price and the adjusted world price for upland cotton.

Code of Federal Regulations, 2011 CFR

2011-01-01

... and the adjusted world price for upland cotton. 1427.25 Section 1427.25 Agriculture Regulations of the..., PURCHASES, AND OTHER OPERATIONS COTTON Nonrecourse Cotton Loan and Loan Deficiency Payments § 1427.25 Determination of the prevailing world market price and the adjusted world price for upland cotton. (a) CCC will...

7 CFR 1427.25 - Determination of the prevailing world market price and the adjusted world price for upland cotton.

Code of Federal Regulations, 2014 CFR

2014-01-01

... and the adjusted world price for upland cotton. 1427.25 Section 1427.25 Agriculture Regulations of the..., PURCHASES, AND OTHER OPERATIONS COTTON Nonrecourse Cotton Loan and Loan Deficiency Payments § 1427.25 Determination of the prevailing world market price and the adjusted world price for upland cotton. (a) CCC will...

Aspen Regeneration in Riparian ManagementZones in Northern Minnesota: Effects ofResidual Overstory and Harvest Method

Treesearch

Brian Palik; Kory Cease; Leanne Egeland; Charles Blinn

2003-01-01

We examined aspen regeneration under diferent riparian management zone (RMZ) treatments in aspen forests in northern Minnesota. We also compared aspen regeneration in partially harvested RMZs to adjacent upland clearcuts. The four RMZ treatments included: (1) full control (no cutting in RMZ or upland); (2) riparian control (RMZ uncut; upland clearcut); and partially...

Climate Effects on Plant Range Distributions and Community Structure of Pacific Northwest Prairies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bridgham, Scott D.; Johnson, Bart

2013-09-26

Pacific Northwest (PNW) prairies are an imperiled ecosystem that contain a large number of plant species with high fidelity to this habitat. The few remaining high-quality PNW prairies harbor a number of sensitive, rare, and endangered plant species that may be further at-risk with climate change. Thus, PNW prairies are an excellent model system to examine how climate change will affect the distribution of native plant species in grassland sites. Our experimental objectives were to determine: (i) how climate change will affect the range distribution of native plant species; (ii) what life history stages are most sensitive to climate changemore » in a group of key indicator native species; (iii) the robustness of current restoration techniques and suites of species to changing climate, and in particular, the relative competitiveness of native species versus exotic invasive species; and (iv) the effects of climate change on carbon and nutrient cycling and soil-microbial-plant feedbacks. We addressed these objectives by experimentally increasing temperature 2.5 to 3.0 ºC above ambient with overhead infrared lamps and increasing wet-season precipitation by 20% above ambient in three upland prairie sites in central-western Washington, central-western Oregon, and southwestern Oregon from fall 2010 through 2012. Additional precipitation was applied within 2 weeks of when it fell so precipitation intensity was increased, particularly during the winter rainy season but with minimal additions during the summer dry season. These three sites also represent a 520-km natural climate gradient of increasing degree of severity of Mediterranean climate from north to south. After removing the extant vegetation, we planted a diverse suite of 12 native species that have their northern range limit someplace within the PNW in each experimental plot. An additional 20 more wide-spread native species were also planted into each plot. We found that recruitment of plant species within their ranges was negatively impacted by increased temperatures, but for species planted north of their current range, increased temperature was neutral. However, for surviving plants climate treatments and site-specific factors (e.g., nutrient availability) were the strongest predictors of plant growth and seed set. When recruitment and plant growth are considered together, increased temperatures are negative within a species current range but beyond this range they become positive. Germination was the most critical stage for plant response across all sites and climate treatments. Our results underscore the importance of including plant vital rates into models that are examining climate change effects on plant ranges. Warming altered plant community composition, decreased diversity, and increased total cover, with warmed northern communities over time becoming more like ambient communities further south. In particular, warming increased the cover of annual introduced species, suggesting that the observed biogeographic pattern of increasing invasion by this plant functional group in US West Coast prairies as one moves further south is at least in part due to climate. Our results suggest that with the projected increase in drought severity with climate change, Pacific Northwest prairies may face an increase of invasion by annuals, similar to what has been observed in California, resulting in novel species assemblages and shifts in functional composition, which in turn may alter ecosystem function. Warming generally increased nutrient availability and plant productivity across all sites. The seasonality of soil respiration responses to heating were strongly dependent on the Mediterranean climate gradient in the PNW, with heating responses being generally positive during periods of adequate soil moisture and becoming neutral to negative during periods of low soil moisture. The asynchrony between temperature and precipitation may make soils less sensitive to warming. Precipitation effects were minimal for all measured responses indicating the importance of increased temperatures in driving biotic responses to climate change in Mediterranean ecosystems. However, substantially increased precipitation during the dry season would almost certainly have profound effects, but the opposite is predicted by current climate change models for the PNW. A manipulative climate change experiment embedded within a natural climate gradient provides unique insights into the degree to which biotic responses to climate change are regionally consistent and site-dependent. Perhaps surprisingly, most climatic effects that we observed were either consistent in the three sites or could be readily interpreted in terms of the gradient of increasing intensity of the Mediterranean climate from north to south.« less

Spatiotemporal ecohydrological patterns and processes in temperate uplands: linking field observations and model results

NASA Astrophysics Data System (ADS)

Dodd, N. H.; Baird, A. J.; Wainwright, J.; Dunn, S. M.

2011-12-01

There are obvious surface expressions - in terms of vegetation patterning - of ecohydrological feedbacks on dryland and peatland hillslopes. Much less is known about subsurface ecohydrological patterns, and whether or not they 'map onto' surface patterns. Likewise, few attempts have been made to investigate how such ecohydrological patterns affect whole-hillslope hydrological behaviour or how widespread they are in non-dryland and non-peatland hillslopes. In this study we investigate surface and near- surface patterning in temperate hillslopes, which to date have been the focus of much hydrological work but little ecohydrological work. In particular, we consider the extent to which the direct and the indirect effects of past and present plant assemblages on local and whole-hillslope soil moisture conditions may contribute to patterning. We have conducted a field study of two temperate upland hillslopes in Northern Scotland, UK, on one of which human intervention plays a major part in shaping the landscape. Repeat measurements have been made of near- surface soil-moisture content, taken at lag distances of 0.25 m to 20 m, under different antecedent hydrological conditions together with characterisation of plant assemblages at the same points through both ground-based vegetation surveys of 1 m × 1 m plots and kite aerial photography (KAP) of > 20 m2 plots. Results from this have indicated that changes in ecohydrological patterns can occur over small spatial scales (< 1 m2) and short time scales (< 1 day). Comparison of values of near-surface soil moisture content with topographic wetness indices, calculated using 1 -m resolution topographic data collected in the field, has highlighted that topography does not explain all of the spatial variation in soil moisture content at this scale. KAP images allowed detection of vegetation patterns not obvious from the ground. Comparison of KAP images and historic aerial photographs has highlighted the persistence of vegetation patterns over time at both sites, and that the current structure of the landscape is clearly related to current and past vegetation management practices. Evidence of sustained patterning under relatively steady environmental conditions has prompted us to consider how internal system dynamics such as competition and facilitation between different plant assemblages, and persistence of ecological memory at a range of timescales may lead to a range of ecohydrological behaviours at the scale of whole hillslopes. To help conceptualize ways in which patterning may arise, we have built a two-dimensional cellular automata-type model in which local interactions between biotic and abiotic components have the potential to lead to emergence of larger-scale patterns within the model landscape. Results from the field study have been used to gauge how well temperate hillslope ecohydrological dynamics are represented in our model, and to check that local neighbourhood patterns in the model outputs resemble real-world patterning. Key words: temperate upland ecohydrology, plant assemblage dynamics, ecological memory, kite aerial photography, cellular automata.

Controls on soil solution nitrogen along an altitudinal gradient in the Scottish uplands

NASA Astrophysics Data System (ADS)

Jackson-Blake, L.; Helliwell, R. C.; Britton, A. J.; Gibbs, S.; Coull, M. C.; Dawson, L.

2012-04-01

Nitrogen (N) deposition continues to threaten upland ecosystems, contributing to acidification, eutrophication and biodiversity loss. We present results from a monitoring study aimed at investigating the fate of this deposited N within a relatively pristine catchment in the Cairngorm Mountains (Scotland). Six sites were established along an elevation gradient (486 - 908 m) spanning the key habitats of temperate maritime uplands. Bulk deposition chemistry, soil carbon content, soil solution chemistry, soil temperature and soil moisture content were monitored over a 5 year period, making this the first study of its kind in a maritime Alpine environment. Results were used to assess spatial variability in soil solution N and to investigate the factors and processes driving this variability. Highest soil solution inorganic N concentrations were found in the alpine soils at the top of the hillslope. Soil carbon stock, dissolved organic carbon concentration and factors representing site hydrology were the best predictors of nitrate concentration. These factors act as proxies for changing net biological uptake and soil/water contact time, and support the hypothesis that spatial variations in soil solution nitrate are controlled by habitat N retention capacity. Soil percent carbon was a better predictor of soil solution N concentration than mass of carbon. Ammonium was less affected by soil hydrology than nitrate and showed the effects of net mineralization inputs, particularly at Racomitrium heath and peaty sites. We hypothesize that high ammonium concentrations at the Racomitrium heath are related to the mineralization of microbial cell tissue during times of stress, largely in the absence of plant uptake. Due to the spatial heterogeneity in N leaching potential, a fine-scale approach to assessing surface water vulnerability to N leaching is recommended over the broad scale, critical loads approach currently in use, particularly for sensitive areas.

Mycorrhizal colonization status of lowland rice (Oryza sativa L.) in the southeastern region of China.

PubMed

Chen, Xun-Wen; Wu, Fu-Yong; Li, Hui; Chan, Wai-Fung; Wu, Sheng-Chun; Wong, Ming-Hung

2017-02-01

The accumulation, distribution, and speciation of contaminants, such as arsenic, in rice can be affected by soil microorganisms such as arbuscular mycorrhizal fungi (AMF). As a potential measure to control contaminant acquisition in rice, the status and performance of AMF in the field need to be investigated. Root samples of rice plants were collected in seven different cities in Guangdong, Jiangxi, Hubei, and Jiangsu Provinces in China in order to investigate the colonization rate of AMF. The total DNA of the roots was extracted, followed by PCR and sequencing, and further confirmed the existence of AMF. The highest colonization rates (19.5 ± 7.2%) were observed in samples from Huizhou City, Guangdong Province. Sequences of ribosomal DNA derived from Pingtan (PT) and Shuikou (SK) in Huizhou shared a similarity of 73 and 86% to Glomus cf. clarum Att894-7 (FM865542) and "uncultured fungus" (EF434122.1), respectively. The moisture tolerance of the AMF from different sources was tested by subjecting to different levels of water content in the soil. Only AMF from PT, SK, and LJ colonized rice under a condition of 100% of the soil water holding capacity (WHC), but not those isolated from upland plants. The AM colonization rate could be governed by the lighting conditions and temperature. AMF isolated in paddy fields has been shown to have more tolerance to moisture than other upland species. Radial oxygen loss (species and stress dependent) could be an essential factor influencing the colonization rate and requires more investigation.

Damage by Tibraca limbativentris Stål (Pentatomidae) to Upland Rice Cultivated in Amazon Rainforest Region (Brazil) at Different Growth Stages.

PubMed

Krinski, D; Foerster, L A

2017-02-01

In this study, we evaluated the damage caused in the field by Tibraca limbativentris Stål adults at different levels of infestation (0, 1, 2, and 4 stink bugs) per three rice plants during three growth stages (V8, V13, and R4 stages) of upland rice cultivated in southwestern of Pará State, Amazon Rainforest region, Brazil. Heading time (panicle exertion) was affected by T. limbativentris infestations mainly in the vegetative stage and the whiteheads percentage in treatments ranged from 18.2 to 38%. The dead hearts percentages varied between 0 and 21.5%, and the mean number of primary branches (ramifications) ranged from 5.9 ± 0.4 to 12.3 ± 0.2. The number of empty spikelets was only affected in infestations with four insects/three plants, while the quantity of filled grains per panicle was affected only when infestations occurred during the vegetative stage. The total number of spikelets (filled + empty) per panicle decreased significantly in all phenological stages, and the percentage of damage ranged from 17 to 44% among treatments. Based on the proportion of damage observed, we suggest doubling the number of insects presently used as action threshold to 2 and 4 stink bugs per 15 stalks sampled for the vegetative stage, and of 1 or 2 stink bugs per 15 stalks sampled at the beginning of reproductive stage (R3/R4). Also, the field should be monitored during the entire vegetative stage, since most damage was observed in this phenological stage.

Plant-plant competition outcomes are modulated by plant effects on the soil bacterial community.

PubMed

Hortal, S; Lozano, Y M; Bastida, F; Armas, C; Moreno, J L; Garcia, C; Pugnaire, F I

2017-12-19

Competition is a key process that determines plant community structure and dynamics, often mediated by nutrients and water availability. However, the role of soil microorganisms on plant competition, and the links between above- and belowground processes, are not well understood. Here we show that the effects of interspecific plant competition on plant performance are mediated by feedbacks between plants and soil bacterial communities. Each plant species selects a singular community of soil microorganisms in its rhizosphere with a specific species composition, abundance and activity. When two plant species interact, the resulting soil bacterial community matches that of the most competitive plant species, suggesting strong competitive interactions between soil bacterial communities as well. We propose a novel mechanism by which changes in belowground bacterial communities promoted by the most competitive plant species influence plant performance and competition outcome. These findings emphasise the strong links between plant and soil communities, paving the way to a better understanding of plant community dynamics and the effects of soil bacterial communities on ecosystem functioning and services.

Effects of moisture limitation on tree growth in upland and floodplain forest ecosystems in interior Alaska

Treesearch

John. Yarie

2008-01-01

The objective of this study was to examine the impact of summer throughfall on the growth of trees, at upland and floodplain locations, in the vicinity of Fairbanks, Alaska. Corrugated clear plastic covers were installed under the canopy of floodplain balsam poplar/white spruce stands and upland hardwood/white spruce stands to control soil moisture recharge as a result...

Truffle abundance in riparian and upland mixed-conifer forest of California's southern Sierra Nevada

Treesearch

Marc D. Meyer; Malcolm P. North

2005-01-01

We compared the abundance, diversity, and composition of truffles in riparian and upland areas within a mixed-conifer forest of the Sierra Nevada of California. We sampled for truffles in a single watershed over two seasons (spring and summer) and 4 years to determine whether truffles were more abundant and diverse in riparian than upland sites in old-growth, mixed-...

Source Areas of Water and Nitrate in a Peatland Catchment, Minnesota, USA

NASA Astrophysics Data System (ADS)

Sebestyen, S. D.

2017-12-01

In nitrogen polluted forests, stream nitrate concentrations increase and some unprocessed atmospheric nitrate may be transported to streams during stormflow events. This understanding has emerged from forests with upland mineral soils. In contrast, catchments with northern peatlands may have both upland soils and lowlands with deep organic soils, each with unique effects on nitrate transport and processing. While annual budgets show nitrate yields to be relatively lower from peatland than upland-dominated catchments, little is known about particular runoff events when stream nitrate concentrations have been higher (despite long periods with little or no nitrate in outlet streams) or the reasons why. I used site knowledge and expansive/extensive monitoring at the Marcell Experimental Forest in Minnesota, along with a targeted 2-year study to determine landscape areas, water sources, and nitrate sources that affected stream nitrate variation in a peatland catchment. I combined streamflow, upland runoff, snow amount, and frost depth data from long-term monitoring with nitrate concentration, yield, and isotopic data to show that up to 65% of stream nitrate during snowmelt of 2009 and 2010 was unprocessed atmospheric nitrate. Up to 46% of subsurface runoff from upland soils during 2009 was unprocessed atmospheric nitrate, which shows the uplands to be a stream nitrate source during 2009, but not during 2010 when upland runoff concentrations were below the detection limit. Differences are attributable to variations in water and nitrate sources. Little snow (a nitrate source), less upland runoff relative to peatland runoff, and deeper soil frost in the peatland caused a relatively larger input of nitrate from the uplands to the stream during 2009 and the peatland to the stream during 2010. Despite the near-absence of stream nitrate during much of rest of the year, these findings show an important time when nitrate transport affected downstream aquatic ecosystems, reasons why nitrate was transported, and that atmospheric nitrate pollution had a direct effect on a stream in a peatland catchment. Furthermore, this work illustrates how long-term monitoring when coupled with shorter-duration studies allows contemporary questions to be addressed within legacy catchment studies.

Biochar and Glomus caledonium Influence Cd Accumulation of Upland Kangkong (Ipomoea aquatica Forsk.) Intercropped with Alfred Stonecrop (Sedum alfredii Hance)

PubMed Central

Hu, Junli; Wu, Fuyong; Wu, Shengchun; Lam, Cheung Lung; Lin, Xiangui; Wong, Ming Hung

2014-01-01

Both biochar application and mycorrhizal inoculation have been proposed to improve plant growth and alter bioaccumulation of toxic metals. A greenhouse pot trial was conducted to investigate growth and Cd accumulation of upland kangkong (Ipomoea aquatica Forsk.) intercropped with Alfred stonecrop (Sedum alfredii Hance) in a Cd-contaminated soil inoculated with Glomus caledonium and/or applied with biochar. Compared with the monocultural control, intercropping with stonecrop (IS) decreased kangkong Cd acquisition via rhizosphere competition, and also decreased kangkong yield. Gc inoculation (+M) accelerated growth and Cd acquisition of stonecrop, and hence resulted in further decreases in kangkong Cd acquisition. Regardless of IS and +M, biochar addition (+B) increased kangkong yield via elevating soil available P, and decreased soil Cd phytoavailability and kangkong Cd concentration via increasing soil pH. Compared with the control, the treatment of IS + M + B had a substantially higher kangkong yield (+25.5%) with a lower Cd concentration (−62.7%). Gc generated additive effects on soil alkalinization and Cd stabilization to biochar, causing lower DTPA-extractable (phytoavailable) Cd concentrations and post-harvest transfer risks. PMID:24728157

Effects of GhWUS from upland cotton (Gossypium hirsutum L.) on somatic embryogenesis and shoot regeneration.

PubMed

Xiao, Yanqing; Chen, Yanli; Ding, Yanpeng; Wu, Jie; Wang, Peng; Yu, Ya; Wei, Xi; Wang, Ye; Zhang, Chaojun; Li, Fuguang; Ge, Xiaoyang

2018-05-01

The WUSCHEL (WUS) gene encodes a plant-specific homeodomain-containing transcriptional regulator, which plays important roles during embryogenesis, as well as in the formation of shoot and flower meristems. Here, we isolated two homologues of Arabidopsis thaliana WUS (AtWUS), GhWUS1a_At and GhWUS1b_At, from upland cotton (Gossypium hirsutum). Domain analysis suggested that the two putative GhWUS proteins contained a highly conserved DNA-binding HOX domain and a WUS-box. Expression profile analysis showed that GhWUSs were predominantly expressed during the embryoid stage. Ectopic expression of GhWUSs in Arabidopsis could induce somatic embryo and shoot formation from seedling root tips. Furthermore, in the absence of exogenous hormone, overexpression of GhWUSs in Arabidopsis could promote shoot regeneration from excised roots, and in the presence of exogenous auxin, excised roots expressing GhWUS could be induced to produce somatic embryo. In addition, expression of the chimeric GhWUS repressor in cotton callus inhibited embryogenic callus formation. Our results show that GhWUS is an important regulator of somatic embryogenesis and shoot regeneration. Copyright © 2018 Elsevier B.V. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wike, L; Doug Martin, D; Eric Nelson, E

The SRS Ecology Environmental Information Document (EEID) provides a source of information on the ecology of Savannah River Site (SRS). The SRS is a U.S. Department of Energy (DOE)--owned property on the upper Atlantic Coastal Plain of South Carolina, centered approximately 40 kilometers (25 miles) southeast of Augusta, Georgia. The entire site was designated a National Environmental Research Park in 1972 by the Atomic Energy Commission, the predecessor of DOE. This document summarizes and synthesizes ecological research and monitoring conducted on the three main types of ecosystems found at SRS: terrestrial, wetland and aquatic. It also summarizes the available informationmore » on the threatened and endangered species found on the Savannah River Site. SRS is located along the Savannah River and encompasses an area of 80,267 hectares (310 square miles) in three South Carolina counties. It contains diverse habitats, flora, and fauna. Habitats include upland terrestrial areas, wetlands, streams, reservoirs, and the adjacent Savannah River. These diverse habitats support a variety of plants and animals, including many commercially or recreationally valuable species and several rare, threatened, or endangered species. Soils are the basic terrestrial resource, influencing the development of terrestrial biological communities. Many different soils exist on the SRS, from hydric to well-drained, and from sand to clay. In general, SRS soils are predominantly well-drained loamy sands.« less

Evidence for xylem adaptations to drought in ancient Cordaites of the Carboniferous

NASA Astrophysics Data System (ADS)

Medeiros, J. S.; Hewins, C.; Serbet, R.; Taylor, T. N.; Taylor, E. L.; Ward, J. K.

2013-12-01

Ancient land plants faced the same challenges to growth and survival as modern land plants, including the need to resist xylem embolisms imposed by drought in order to main water supply to leaves. Cordaites, considered to be ancestors of the conifers, were some of the first trees on Earth and are often described as the most drought resistant plants in the North American landscape from the Late Missisipian (~320 MYA) to the early Permian (~250 MYA). Cordaites were common in both mires and dry uplands, however, suggesting considerable variation in drought tolerance, but neither the extent of this variation nor the particular xylem features associated with dryland habitats have been previously examined. We measured xylem anatomical traits including tracheid diameter (D) and wall thickness (t), for Cordaites roots and stems from three sites in Central North America: What Cheer IA, Sahara IL and Lewis Creek KY. From these data we calculated mechanical strength (t/b), which was used to estimate vulnerability to drought embolism (P50) based on comparisons with modern plants. In addition, we used the model of Wilson et al. (2008) to calculate the specific conductivity (Ksp), a measure of xylem water transport capacity. D and Ksp of Cordaites stems were similar to that typical of modern conifers but t/b tended to be lower. However, Cordaites exhibited significant variation in D, t, Ksp and t/b across sites. Stem P50 estimated from comparisons with modern plants ranged from approximately -4 at Lewis Creek to as low as -7 MPa at Sahara. We also found differences between stems and roots for Cordaites. Compared to stems, roots had larger D and higher Ksp, but lower t and t/b, resulting in a P50 ranging from approximately -2 to -4 MPa. In the roots of Sahara Cordaites, lower t/b in roots was a result of both significantly larger conduits and significantly thinner conduit walls compared to stems. Thus, hydraulic segmentation in Cordaites could have facilitated their survival in drier upland habitats, as root embolisms early on during drought could have hydraulically isolated the plant from drying soil. Our data suggest that Cordaites were similar in water transport properties but with low to moderate drought tolerance compared to modern conifers. Observation that Cordaites water transport properties varied across sites supports the idea that they were an ecological diverse plant group. Furthermore, Cordaites from Sahara exhibited a suite of traits typical of modern drought adapted plants, including: low D and Ksp combined with greater t, higher t/b and greater differentiation in t/b between roots and stems. Thus, we provide evidence from fossilized plants that associations between xylem features and habitat, as well as some modern drought adaptations, may be nearly as old as trees themselves.

A synthesis of terrestrial mercury in the western United States: Spatial distribution defined by land cover and plant productivity.

PubMed

Obrist, Daniel; Pearson, Christopher; Webster, Jackson; Kane, Tyler; Lin, Che-Jen; Aiken, George R; Alpers, Charles N

2016-10-15

A synthesis of published vegetation mercury (Hg) data across 11 contiguous states in the western United States showed that aboveground biomass concentrations followed the order: leaves (26μgkg(-1))~branches (26μgkg(-1))>bark (16μgkg(-1))>bole wood (1μgkg(-1)). No spatial trends of Hg in aboveground biomass distribution were detected, which likely is due to very sparse data coverage and different sampling protocols. Vegetation data are largely lacking for important functional vegetation types such as shrubs, herbaceous species, and grasses. Soil concentrations collected from the published literature were high in the western United States, with 12% of observations exceeding 100μgkg(-1), reflecting a bias toward investigations in Hg-enriched sites. In contrast, soil Hg concentrations from a randomly distributed data set (1911 sampling points; Smith et al., 2013a) averaged 24μgkg(-1) (A-horizon) and 22μgkg(-1) (C-horizon), and only 2.6% of data exceeded 100μgkg(-1). Soil Hg concentrations significantly differed among land covers, following the order: forested upland>planted/cultivated>herbaceous upland/shrubland>barren soils. Concentrations in forests were on average 2.5 times higher than in barren locations. Principal component analyses showed that soil Hg concentrations were not or weakly related to modeled dry and wet Hg deposition and proximity to mining, geothermal areas, and coal-fired power plants. Soil Hg distribution also was not closely related to other trace metals, but strongly associated with organic carbon, precipitation, canopy greenness, and foliar Hg pools of overlying vegetation. These patterns indicate that soil Hg concentrations are related to atmospheric deposition and reflect an overwhelming influence of plant productivity - driven by water availability - with productive landscapes showing high soil Hg accumulation and unproductive barren soils and shrublands showing low soil Hg values. Large expanses of low-productivity, arid ecosystems across the western U.S. result in some of the lowest soil Hg concentrations observed worldwide. Copyright © 2015 Elsevier B.V. All rights reserved.