Short-term effects of light quality on leaf gas exchange and hydraulic properties of silver birch (Betula pendula).

PubMed

Niglas, Aigar; Papp, Kaisa; Sekiewicz, Maciej; Sellin, Arne

2017-09-01

Leaves have to acclimatize to heterogeneous radiation fields inside forest canopies in order to efficiently exploit diverse light conditions. Short-term effects of light quality on photosynthetic gas exchange, leaf water use and hydraulic traits were studied on Betula pendula Roth shoots cut from upper and lower thirds of the canopy of 39- to 35-year-old trees growing in natural forest stand, and illuminated with white, red or blue light in the laboratory. Photosynthetic machinery of the leaves developed in different spectral conditions acclimated differently with respect to incident light spectrum: the stimulating effect of complete visible spectrum (white light) on net photosynthesis is more pronounced in upper-canopy layers. Upper-canopy leaves exhibit less water saving behaviour, which may be beneficial for the fast-growing pioneer species on a daily basis. Lower-canopy leaves have lower stomatal conductance resulting in more efficient water use. Spectral gradients existing within natural forest stands represent signals for the fine-tuning of stomatal conductance and tree water relations to afford lavish water use in sun foliage and enhance leaf water-use efficiency in shade foliage sustaining greater hydraulic limitations. Higher sensitivity of hydraulic conductance of shade leaves to blue light probably contributes to the efficient use of short duration sunflecks by lower-canopy leaves. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Changes in leaf area, nitrogen content and canopy photosynthesis in soybean exposed to an ozone concentration gradient.

PubMed

Oikawa, Shimpei; Ainsworth, Elizabeth A

2016-08-01

Influences of ozone (O3) on light-saturated rates of photosynthesis in crop leaves have been well documented. To increase our understanding of O3 effects on individual- or stand level productivity, a mechanistic understanding of factors determining canopy photosynthesis is necessary. We used a canopy model to scale photosynthesis from leaf to canopy, and analyzed the importance of canopy structural and leaf ecophysiological characteristics in determining canopy photosynthesis in soybean stands exposed to 9 concentrations of [O3] (37-116 ppb; 9-h mean). Light intensity and N content peaked in upper canopy layers, and sharply decreased through the lower canopy. Plant leaf area decreased with increasing [O3] allowing for greater light intensity to reach lower canopy levels. At the leaf level, light-saturated photosynthesis decreased and dark respiration increased with increasing [O3]. These data were used to calculate daily net canopy photosynthesis (Pc). Pc decreased with increasing [O3] with an average decrease of 10% for an increase in [O3] of 10 ppb, and which was similar to changes in above-ground dry mass production of the stands. Absolute daily net photosynthesis of lower layers was very low and thus the decrease in photosynthesis in the lower canopy caused by elevated [O3] had only minor significance for total canopy photosynthesis. Sensitivity analyses revealed that the decrease in Pc was associated with changes in leaf ecophysiology but not with decrease in leaf area. The soybean stands were very crowded, the leaves were highly mutually shaded, and sufficient light for positive carbon balance did not penetrate to lower canopy leaves, even under elevated [O3]. Copyright © 2016 Elsevier Ltd. All rights reserved.

[Effects of nitrogen application rate on light interception and dry matter distribution at diffe-rent layers in wheat canopy under supplemental irrigation based on measuring soil moisture.

PubMed

Zheng, Xue Jiao; Yu, Zhen Wen; Zhang, Yong Li; Shi, Yu

2018-02-01

With the large-spike wheat cultivar Shannong 23 as test material,a field experiment was conducted by increasing the relative soil moisture content to 70% and 65% at jointing and anthesis stages. Four nitrogen levels,0 (N 0 ), 180 (N 1 ), 240 (N 2 ) and 300 kg·hm -2 (N 3 ), were designed to examine the effects of nitrogen application rates on the interception of photosynthetic active radiation (PAR) and dry matter distribution of wheat at different canopy layers. The results showed that the total stem number of wheat population at anthesis stage, the leaf area index at 10, 20 and 30 days after anthesis, PAR capture ratio at upper and middle layers and total PAR capture ratio in wheat canopy on day 20 after anthesis of treatment N 2 were significantly higher than those in the treatments of both N 0 and N 1 . Those indexes showed no significant increase when the application rate increased to 300 kg·hm -2 (N 3 ). The vegetative organ dry matter accumulation of all layers at maturity stage of treatment N 2 were significantly higher than N 0 and N 1 . Compared with treatment N 0 and N 1 , N 2 increased the grain and total dry matter accumulation by 36.7% and 35.4%, 9.5% and 10.2%, respectively, but had no significant difference with treatment N 3 . The vegetative organ dry matter accumulation at all layers, grain and total dry matter accumulation were significantly and positively correlated with PAR capture ratio at upper and middle layers, and had no significant correlation with that at lower layer. The vegetative organ dry matter accumulation at all layers was significantly and positively correlated with grain dry matter accumulation. The application rate at 240 kg·hm -2 (N 2 ) would be the optimum treatment under the present experimental condition.

Electron transport efficiency at opposite leaf sides: effect of vertical distribution of leaf angle, structure, chlorophyll content and species in a forest canopy.

PubMed

Mänd, Pille; Hallik, Lea; Peñuelas, Josep; Kull, Olevi

2013-02-01

We investigated changes in chlorophyll a fluorescence from alternate leaf surfaces to assess the intraleaf light acclimation patterns in combination with natural variations in radiation, leaf angles, leaf mass per area (LMA), chlorophyll content (Chl) and leaf optical parameters. Measurements were conducted on bottom- and top-layer leaves of Tilia cordata Mill. (a shade-tolerant sub-canopy species, sampled at heights of 11 and 16 m) and Populus tremula L. (a light-demanding upper canopy species, sampled at canopy heights of 19 and 26 m). The upper canopy species P. tremula had a six times higher PSII quantum yield (Φ(II)) and ratio of open reaction centres (qP), and a two times higher LMA than T. cordata. These species-specific differences were also present when the leaves of both species were in similar light conditions. Leaf adaxial/abaxial fluorescence ratio was significantly larger in the case of more horizontal leaves. Populus tremula (more vertical leaves), had smaller differences in fluorescence parameters between alternate leaf sides compared with T. cordata (more horizontal leaves). However, optical properties on alternate leaf sides showed a larger difference for P. tremula. Intraspecifically, the measured optical parameters were better correlated with LMA than with leaf Chl. Species-specific differences in leaf anatomy appear to enhance the photosynthetic potential of leaf biochemistry by decreasing the interception of excess light in P. tremula and increasing the light absorptance in T. cordata. Our results indicate that intraleaf light absorption gradient, described here as leaf adaxial/abaxial side ratio of chlorophyll a fluorescence, varies significantly with changes in leaf light environment in a multi-layer multi-species tree canopy. However, this variation cannot be described merely as a simple function of radiation, leaf angle, Chl or LMA, and species-specific differences in light acclimation strategies should also be considered.

A simple hydrologically based model of land surface water and energy fluxes for general circulation models

NASA Technical Reports Server (NTRS)

Liang, XU; Lettenmaier, Dennis P.; Wood, Eric F.; Burges, Stephen J.

1994-01-01

A generalization of the single soil layer variable infiltration capacity (VIC) land surface hydrological model previously implemented in the Geophysical Fluid Dynamics Laboratory (GFDL) general circulation model (GCM) is described. The new model is comprised of a two-layer characterization of the soil column, and uses an aerodynamic representation of the latent and sensible heat fluxes at the land surface. The infiltration algorithm for the upper layer is essentially the same as for the single layer VIC model, while the lower layer drainage formulation is of the form previously implemented in the Max-Planck-Institut GCM. The model partitions the area of interest (e.g., grid cell) into multiple land surface cover types; for each land cover type the fraction of roots in the upper and lower zone is specified. Evapotranspiration consists of three components: canopy evaporation, evaporation from bare soils, and transpiration, which is represented using a canopy and architectural resistance formulation. Once the latent heat flux has been computed, the surface energy balance is iterated to solve for the land surface temperature at each time step. The model was tested using long-term hydrologic and climatological data for Kings Creek, Kansas to estimate and validate the hydrological parameters, and surface flux data from three First International Satellite Land Surface Climatology Project Field Experiment (FIFE) intensive field campaigns in the summer-fall of 1987 to validate the surface energy fluxes.

Spectral Bio-indicator Simulations for Tracking Photosynthetic Activities in a Corn Field

NASA Technical Reports Server (NTRS)

Cheng, Yen-Ben; Middleton, Elizabeth M.; Huemmrich, K. Fred; Zhang, Qingyuan; Corp, Lawrence; Campbell, Petya; Kustas, William

2011-01-01

Accurate assessment of vegetation canopy optical properties plays a critical role in monitoring natural and managed ecosystems under environmental changes. In this context, radiative transfer (RT) models simulating vegetation canopy reflectance have been demonstrated to be a powerful tool for understanding and estimating spectral bio-indicators. In this study, two narrow band spectroradiometers were utilized to acquire observations over corn canopies for two summers. These in situ spectral data were then used to validate a two-layer Markov chain-based canopy reflectance model for simulating the Photochemical Reflectance Index (PRI), which has been widely used in recent vegetation photosynthetic light use efficiency (LUE) studies. The in situ PRI derived from narrow band hyperspectral reflectance exhibited clear responses to: 1) viewing geometry which affects the asset of light environment; and 2) seasonal variation corresponding to the growth stage. The RT model (ACRM) successfully simulated the responses to the variable viewing geometry. The best simulations were obtained when the model was set to run in the two layer mode using the sunlit leaves as the upper layer and shaded leaves as the lower layer. Simulated PRI values yielded much better correlations to in situ observations when the cornfield was dominated by green foliage during the early growth, vegetative and reproductive stages (r = 0.78 to 0.86) than in the later senescent stage (r = 0.65). Further sensitivity analyses were conducted to show the important influences of leaf area index (LAI) and the sunlit/shaded ratio on PRI observations.

Off-Nadir Hyperspectral Sensing for Estimation of Vertical Profile of Leaf Chlorophyll Content within Wheat Canopies.

PubMed

Kong, Weiping; Huang, Wenjiang; Casa, Raffaele; Zhou, Xianfeng; Ye, Huichun; Dong, Yingying

2017-11-23

Monitoring the vertical profile of leaf chlorophyll (Chl) content within winter wheat canopies is of significant importance for revealing the real nutritional status of the crop. Information on the vertical profile of Chl content is not accessible to nadir-viewing remote or proximal sensing. Off-nadir or multi-angle sensing would provide effective means to detect leaf Chl content in different vertical layers. However, adequate information on the selection of sensitive spectral bands and spectral index formulas for vertical leaf Chl content estimation is not yet available. In this study, all possible two-band and three-band combinations over spectral bands in normalized difference vegetation index (NDVI)-, simple ratio (SR)- and chlorophyll index (CI)-like types of indices at different viewing angles were calculated and assessed for their capability of estimating leaf Chl for three vertical layers of wheat canopies. The vertical profiles of Chl showed top-down declining trends and the patterns of band combinations sensitive to leaf Chl content varied among different vertical layers. Results indicated that the combinations of green band (520 nm) with NIR bands were efficient in estimating upper leaf Chl content, whereas the red edge (695 nm) paired with NIR bands were dominant in quantifying leaf Chl in the lower layers. Correlations between published spectral indices and all NDVI-, SR- and CI-like types of indices and vertical distribution of Chl content showed that reflectance measured from 50°, 30° and 20° backscattering viewing angles were the most promising to obtain information on leaf Chl in the upper-, middle-, and bottom-layer, respectively. Three types of optimized spectral indices improved the accuracy for vertical leaf Chl content estimation. The optimized three-band CI-like index performed the best in the estimation of vertical distribution of leaf Chl content, with R² of 0.84-0.69, and RMSE of 5.37-5.56 µg/cm² from the top to the bottom layers, while the optimized SR-like index was recommended for the bottom Chl estimation due to its simple and universal form. We suggest that it is necessary to take into account the penetration characteristic of the light inside the canopy for different Chl absorption regions of the spectrum and the formula used to derive spectral index when estimating the vertical profile of leaf Chl content using off-nadir hyperspectral data.

Observations of the scale-dependent turbulence and evaluation of the flux–gradient relationship for sensible heat for a closed Douglas-fir canopy in very weak wind conditions

DOE PAGES

Vickers, D.; Thomas, C. K.

2014-09-16

Observations of the scale-dependent turbulent fluxes, variances, and the bulk transfer parameterization for sensible heat above, within, and beneath a tall closed Douglas-fir canopy in very weak winds are examined. The daytime sub-canopy vertical velocity spectra exhibit a double-peak structure with peaks at timescales of 0.8 s and 51.2 s. A double-peak structure is also observed in the daytime sub-canopy heat flux co-spectra. The daytime momentum flux co-spectra in the upper bole space and in the sub-canopy are characterized by a relatively large cross-wind component, likely due to the extremely light and variable winds, such that the definition of amore » mean wind direction, and subsequent partitioning of the momentum flux into along- and cross-wind components, has little physical meaning. Positive values of both momentum flux components in the sub-canopy contribute to upward transfer of momentum, consistent with the observed sub-canopy secondary wind speed maximum. For the smallest resolved scales in the canopy at nighttime, we find increasing vertical velocity variance with decreasing timescale, consistent with very small eddies possibly generated by wake shedding from the canopy elements that transport momentum, but not heat. Unusually large values of the velocity aspect ratio within the canopy were observed, consistent with enhanced suppression of the horizontal wind components compared to the vertical by the very dense canopy. The flux–gradient approach for sensible heat flux is found to be valid for the sub-canopy and above-canopy layers when considered separately in spite of the very small fluxes on the order of a few W m −2 in the sub-canopy. However, single-source approaches that ignore the canopy fail because they make the heat flux appear to be counter-gradient when in fact it is aligned with the local temperature gradient in both the sub-canopy and above-canopy layers. While sub-canopy Stanton numbers agreed well with values typically reported in the literature, our estimates for the above-canopy Stanton number were much larger, which likely leads to underestimated modeled sensible heat fluxes above dark warm closed canopies.« less

Observations of the scale-dependent turbulence and evaluation of the flux–gradient relationship for sensible heat for a closed Douglas-fir canopy in very weak wind conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vickers, D.; Thomas, C. K.

Observations of the scale-dependent turbulent fluxes, variances, and the bulk transfer parameterization for sensible heat above, within, and beneath a tall closed Douglas-fir canopy in very weak winds are examined. The daytime sub-canopy vertical velocity spectra exhibit a double-peak structure with peaks at timescales of 0.8 s and 51.2 s. A double-peak structure is also observed in the daytime sub-canopy heat flux co-spectra. The daytime momentum flux co-spectra in the upper bole space and in the sub-canopy are characterized by a relatively large cross-wind component, likely due to the extremely light and variable winds, such that the definition of amore » mean wind direction, and subsequent partitioning of the momentum flux into along- and cross-wind components, has little physical meaning. Positive values of both momentum flux components in the sub-canopy contribute to upward transfer of momentum, consistent with the observed sub-canopy secondary wind speed maximum. For the smallest resolved scales in the canopy at nighttime, we find increasing vertical velocity variance with decreasing timescale, consistent with very small eddies possibly generated by wake shedding from the canopy elements that transport momentum, but not heat. Unusually large values of the velocity aspect ratio within the canopy were observed, consistent with enhanced suppression of the horizontal wind components compared to the vertical by the very dense canopy. The flux–gradient approach for sensible heat flux is found to be valid for the sub-canopy and above-canopy layers when considered separately in spite of the very small fluxes on the order of a few W m −2 in the sub-canopy. However, single-source approaches that ignore the canopy fail because they make the heat flux appear to be counter-gradient when in fact it is aligned with the local temperature gradient in both the sub-canopy and above-canopy layers. While sub-canopy Stanton numbers agreed well with values typically reported in the literature, our estimates for the above-canopy Stanton number were much larger, which likely leads to underestimated modeled sensible heat fluxes above dark warm closed canopies.« less

Utilizing In Situ Directional Hyperspectral Measurements to Validate Bio-Indicator Simulations for a Corn Crop Canopy

NASA Technical Reports Server (NTRS)

Cheng, Yen-Ben; Middleton, Elizabeth M.; Huemmrich, Karl F.; Zhang, Qingyuan; Campbell, Petya K. E.; Corp, Lawrence A.; Russ, Andrew L.; Kustas, William P.

2010-01-01

Two radiative transfer canopy models, SAIL and the two-layer Markov-Chain Canopy Reflectance Model (MCRM), were coupled with in situ leaf optical properties to simulate canopy-level spectral band ratio vegetation indices with the focus on the photochemical reflectance index in a cornfield. In situ hyperspectral measurements were made at both leaf and canopy levels. Leaf optical properties were obtained from both sunlit and shaded leaves. Canopy reflectance was acquired for eight different relative azimuth angles (psi) at three different view zenith angles (Theta (sub v)), and later used to validate model outputs. Field observations of photochemical reflectance index (PRI) for sunlit leaves exhibited lower values than shaded leaves, indicating higher light stress. Canopy PRI expressed obvious sensitivity to viewing geometry, as a function of both Theta (sub v) and psi . Overall, simulations from MCRM exhibited better agreements with in situ values than SAIL. When using only sunlit leaves as input, the MCRM-simulated PRI values showed satisfactory correlation and RMSE, as compared to in situ values. However, the performance of the MCRM model was significantly improved after defining a lower canopy layer comprised of shaded leaves beneath the upper sunlit leaf layer. Four other widely used band ratio vegetation indices were also studied and compared with the PRI results. MCRM simulations were able to generate satisfactory simulations for these other four indices when using only sunlit leaves as input; but unlike PRI, adding shaded leaves did not improve the performance of MCRM. These results support the hypothesis that the PRI is sensitive to physiological dynamics while the others detect static factors related to canopy structure. Sensitivity analysis was performed on MCRM in order to better understand the effects of structure related parameters on the PRI simulations. Leaf area index (LAI) showed the most significant impact on MCRM-simulated PRI among the parameters studied. This research shows the importance of hyperspectral and narrow band sensor studies, and especially the necessity of including the green wavelengths (e.g., 531 nm) on satellites proposing to monitor carbon dynamics of terrestrial ecosystems.

Characterization of Canopy Layering in Forested Ecosystems Using Full Waveform Lidar

NASA Technical Reports Server (NTRS)

Whitehurst, Amanda S.; Swatantran, Anu; Blair, J. Bryan; Hofton, Michelle A.; Dubayah, Ralph

2013-01-01

Canopy structure, the vertical distribution of canopy material, is an important element of forest ecosystem dynamics and habitat preference. Although vertical stratification, or "canopy layering," is a basic characterization of canopy structure for research and forest management, it is difficult to quantify at landscape scales. In this paper we describe canopy structure and develop methodologies to map forest vertical stratification in a mixed temperate forest using full-waveform lidar. Two definitions-one categorical and one continuous-are used to map canopy layering over Hubbard Brook Experimental Forest, New Hampshire with lidar data collected in 2009 by NASA's Laser Vegetation Imaging Sensor (LVIS). The two resulting canopy layering datasets describe variation of canopy layering throughout the forest and show that layering varies with terrain elevation and canopy height. This information should provide increased understanding of vertical structure variability and aid habitat characterization and other forest management activities.

Canopy position affects the relationships between leaf respiration and associated traits in a tropical rainforest in Far North Queensland.

PubMed

Weerasinghe, Lasantha K; Creek, Danielle; Crous, Kristine Y; Xiang, Shuang; Liddell, Michael J; Turnbull, Matthew H; Atkin, Owen K

2014-06-01

We explored the impact of canopy position on leaf respiration (R) and associated traits in tree and shrub species growing in a lowland tropical rainforest in Far North Queensland, Australia. The range of traits quantified included: leaf R in darkness (RD) and in the light (RL; estimated using the Kok method); the temperature (T)-sensitivity of RD; light-saturated photosynthesis (Asat); leaf dry mass per unit area (LMA); and concentrations of leaf nitrogen (N), phosphorus (P), soluble sugars and starch. We found that LMA, and area-based N, P, sugars and starch concentrations were all higher in sun-exposed/upper canopy leaves, compared with their shaded/lower canopy and deep-shade/understory counterparts; similarly, area-based rates of RD, RL and Asat (at 28 °C) were all higher in the upper canopy leaves, indicating higher metabolic capacity in the upper canopy. The extent to which light inhibited R did not differ significantly between upper and lower canopy leaves, with the overall average inhibition being 32% across both canopy levels. Log-log RD-Asat relationships differed between upper and lower canopy leaves, with upper canopy leaves exhibiting higher rates of RD for a given Asat (both on an area and mass basis), as well as higher mass-based rates of RD for a given [N] and [P]. Over the 25-45 °C range, the T-sensitivity of RD was similar in upper and lower canopy leaves, with both canopy positions exhibiting Q10 values near 2.0 (i.e., doubling for every 10 °C rise in T) and Tmax values near 60 °C (i.e., T where RD reached maximal values). Thus, while rates of RD at 28 °C decreased with increasing depth in the canopy, the T-dependence of RD remained constant; these findings have important implications for vegetation-climate models that seek to predict carbon fluxes between tropical lowland rainforests and the atmosphere. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Branch and foliage morphological plasticity in old-growth Thuja plicata.

PubMed

Edelstein, Zoe R; Ford, E David

2003-07-01

At the Wind River Canopy Crane Facility in southeastern Washington State, USA, we examined phenotypic variation between upper- and lower-canopy branches of old-growth Thuja plicata J. Donn ex D. Don (western red cedar). Lower-canopy branches were longer, sprouted fewer daughter branches per unit stem length and were more horizontal than upper-canopy branches. Thuja plicata holds its foliage in fronds, and these had less projected area per unit mass, measured by specific frond area, and less overlap, measured by silhouette to projected area ratio (SPARmax), in the lower canopy than in the upper canopy. The value of SPARmax, used as an indicator of sun and shade foliage in needle-bearing species, did not differ greatly between upper- and lower-canopy branches. We suggest that branching patterns, as well as frond structure, are important components of morphological plasticity in T. plicata. Our results imply that branches of old-growth T. plicata trees have a guerilla growth pattern, responding to changes in solar irradiance in a localized manner.

Organized turbulent motions in a hedgerow vineyard: effect of evolving canopy structure

NASA Astrophysics Data System (ADS)

Vendrame, Nadia; Tezza, Luca; Tha Paw U, Kyaw; Pitacco, Andrea

2017-04-01

Vegetation-atmosphere exchanges are determined by functional and structural properties of the plants together with environmental forcing. However, a fundamental aspect is the interaction of the canopy with the lower atmosphere. The vegetation deeply alters the composition and physical properties of the air flow, exchanging energy, matter and momentum with it. These processes take place in the bottom part of the atmospheric boundary layer where turbulence is the main mechanism transporting within-canopy air towards the mid- and upper atmospheric boundary layer and vice versa. Canopy turbulence is highly influenced by vegetation drag elements, determining the vertical profile of turbulent moments within the canopy. Canopies organized in rows, like vineyards, show peculiar turbulent transport dynamics. In addition, the morphological structure (phenology) of the vineyard is greatly variable seasonally, shifting from an empty canopy during vine dormancy to dense foliage in summer. The understanding of the canopy ventilation regime is related to several practical applications in vineyard management. For example, within-canopy turbulent motion is very important to predict small particles dispersion, like fungal spores, and minimize infection studying the effect on leaf wetness duration. Our study aims to follow the continuous evolution of turbulence characteristics and canopy structure during the growing season of a hedgerow vineyard, from bud break to fully developed canopy. The field experiment was conducted in a flat extensive vineyard in North-Eastern Italy, using a vertical array of five synchronous sonic anemometers within and above the canopy. Turbulent flow organization was greatly influenced by canopy structure. Turbulent coherent structures involved in momentum transport have been investigated using the classical quadrant analysis and a novel approach to identify dominant temporal scales. Momentum transport in the canopy was dominated by downward gusts showing increasing importance throughout the growing season. At the same time, transport intermittency increased with developing leaf density. The contribution by interaction terms, acting opposite to downward momentum flux, increased in the lower canopy. The analysis of event time scales revealed that momentum transport in the vineyard was dominated by sweeps of 2-4 s duration and ejections of 4-6 s duration, which can be summed to estimate an average duration of dominating coherent structures in the order of 6-10 s. The evolution of canopy morphology did not have any clear influence on structure duration.

Off-Nadir Hyperspectral Sensing for Estimation of Vertical Profile of Leaf Chlorophyll Content within Wheat Canopies

PubMed Central

Huang, Wenjiang; Zhou, Xianfeng; Ye, Huichun; Dong, Yingying

2017-01-01

Monitoring the vertical profile of leaf chlorophyll (Chl) content within winter wheat canopies is of significant importance for revealing the real nutritional status of the crop. Information on the vertical profile of Chl content is not accessible to nadir-viewing remote or proximal sensing. Off-nadir or multi-angle sensing would provide effective means to detect leaf Chl content in different vertical layers. However, adequate information on the selection of sensitive spectral bands and spectral index formulas for vertical leaf Chl content estimation is not yet available. In this study, all possible two-band and three-band combinations over spectral bands in normalized difference vegetation index (NDVI)-, simple ratio (SR)- and chlorophyll index (CI)-like types of indices at different viewing angles were calculated and assessed for their capability of estimating leaf Chl for three vertical layers of wheat canopies. The vertical profiles of Chl showed top-down declining trends and the patterns of band combinations sensitive to leaf Chl content varied among different vertical layers. Results indicated that the combinations of green band (520 nm) with NIR bands were efficient in estimating upper leaf Chl content, whereas the red edge (695 nm) paired with NIR bands were dominant in quantifying leaf Chl in the lower layers. Correlations between published spectral indices and all NDVI-, SR- and CI-like types of indices and vertical distribution of Chl content showed that reflectance measured from 50°, 30° and 20° backscattering viewing angles were the most promising to obtain information on leaf Chl in the upper-, middle-, and bottom-layer, respectively. Three types of optimized spectral indices improved the accuracy for vertical leaf Chl content estimation. The optimized three-band CI-like index performed the best in the estimation of vertical distribution of leaf Chl content, with R2 of 0.84–0.69, and RMSE of 5.37–5.56 µg/cm2 from the top to the bottom layers, while the optimized SR-like index was recommended for the bottom Chl estimation due to its simple and universal form. We suggest that it is necessary to take into account the penetration characteristic of the light inside the canopy for different Chl absorption regions of the spectrum and the formula used to derive spectral index when estimating the vertical profile of leaf Chl content using off-nadir hyperspectral data. PMID:29168757

A plant canopy light absorption model with application to wheat

NASA Technical Reports Server (NTRS)

Chance, J. E.; Lemaster, E. W.

1977-01-01

From the light absorption model the absorption of light in the photosynthetically active region of the spectrum was calculated for a Penjamo wheat crop for several situations including: (1) the percent absorption of the incident radiation by a canopy having a four layer structure; (2) the percent absorption of light by the individual layers within a four layer canopy and by the underlying soil; (3) the percent absorption of light by each vegetative canopy layer for variable sun angle; and (4) the cumulative solar energy absorbed by the developing wheat canopy as it progresses from a single layer through its growth stages to a three layer canopy. This calculation was also presented as a function of the leaf area index.

Stomatal Conductance, Plant Hydraulics, and Multilayer Canopies: A New Paradigm for Earth System Models or Unnecessary Uncertainty

NASA Astrophysics Data System (ADS)

Bonan, G. B.

2016-12-01

Soil moisture stress is a key regulator of canopy transpiration, the surface energy budget, and land-atmosphere coupling. Many land surface models used in Earth system models have an ad-hoc parameterization of soil moisture stress that decreases stomatal conductance with soil drying. Parameterization of soil moisture stress from more fundamental principles of plant hydrodynamics is a key research frontier for land surface models. While the biophysical and physiological foundations of such parameterizations are well-known, their best implementation in land surface models is less clear. Land surface models utilize a big-leaf canopy parameterization (or two big-leaves to represent the sunlit and shaded canopy) without vertical gradients in the canopy. However, there are strong biometeorological and physiological gradients in plant canopies. Are these gradients necessary to resolve? Here, I describe a vertically-resolved, multilayer canopy model that calculates leaf temperature and energy fluxes, photosynthesis, stomatal conductance, and leaf water potential at each level in the canopy. In this model, midday leaf water stress manifests in the upper canopy layers, which receive high amounts of solar radiation, have high leaf nitrogen and photosynthetic capacity, and have high stomatal conductance and transpiration rates (in the absence of leaf water stress). Lower levels in the canopy become water stressed in response to longer-term soil moisture drying. I examine the role of vertical gradients in the canopy microclimate (solar radiation, air temperature, vapor pressure, wind speed), structure (leaf area density), and physiology (leaf nitrogen, photosynthetic capacity, stomatal conductance) in determining above canopy fluxes and gradients of transpiration and leaf water potential within the canopy.

Change in hydraulic properties and leaf traits of a tall rainforest tree species subjected to long-term throughfall exclusion in the perhumid tropics

NASA Astrophysics Data System (ADS)

Schuldt, B.; Leuschner, C.; Horna, V.; Moser, G.; Köhler, M.; Barus, H.

2010-11-01

In a throughfall displacement experiment on Sulawesi, Indonesia, three 0.16 ha stands of a premontane perhumid rainforest were exposed to a two-year soil desiccation period that reduced the soil moisture in the upper soil layers beyond the conventional wilting point. About 25 variables, including leaf morphological and chemical traits, stem diameter growth and hydraulic properties of the xylem in the trunk and terminal twigs, were investigated in trees of the tall-growing tree species Castanopsis acuminatissima (Fagaceae) by comparing desiccated roof plots with nearby control plots. We tested the hypotheses that this tall and productive species is particularly sensitive to drought, and the exposed upper sun canopy is more affected than the shade canopy. Hydraulic conductivity in the xylem of terminal twigs normalised to vessel lumen area was reduced by 25%, leaf area-specific conductivity by 10-33% during the desiccation treatment. Surprisingly, the leaves present at the end of the drought treatment were significantly larger, but not smaller in the roof plots, though reduced in number (about 30% less leaves per unit of twig sapwood area), which points to a drought effect on the leaf bud formation while the remaining leaves may have profited from a surplus of water. Mean vessel diameter and axial conductivity in the outermost xylem of the trunk were significantly reduced and wood density increased, while annual stem diameter increment decreased by 26%. In contradiction to our hypotheses, (i) we found no signs of major damage to the C. acuminatissima trees nor to any other drought sensitivity of tall trees, and (ii) the exposed upper canopy was not more drought susceptible than the shade canopy.

Turbulent transports over tundra

NASA Technical Reports Server (NTRS)

Fitzjarrald, David R.; Moore, Kathleen E.

1992-01-01

An extensive period of eddy correlation surface flux measurements was conducted at a site distant from the coast on the western Alaskan tundra. The surface exchange of heat and moisture over tundra during the summer was limited by a strong resistance to transfer from the upper soil layer through the ground cover, with canopy resistances to evaporation observed to be approximately 200 s/m. Though July 1988 was anomalously warm and dry in the region and August was close to normal temperature and rainfall, there was no appreciable difference in the canopy resistance between the periods. During the dry sunny period at the end of July, the observed evaporation rate was 2 mm/d. High canopy resistance led to an approximate equipartition of net radiation between latent and sensible heat, each accounting for 40 percent of the available energy, with heat balance apparently going into soil heat flux.

Determining the vertical carbon dioxide source/sink distribution in a mountain pine beetle attacked forest: A comparison of eddy-covariance and ecophysiological approaches

NASA Astrophysics Data System (ADS)

Emmel, C.; Bowler, R.; Black, T. A.; Christen, A.

2012-12-01

Disturbance of forests caused by insect attacks, such as the mountain pine beetle (Dendroctonus ponderosae, MPB) outbreak in Western North America may lead to a conversion of affected forests from a net carbon dioxide (CO2) sink to a net source. Informed management of forests can help reduce the associated CO2 emissions. The objective of this study is to determine the vertical distribution of sources and sinks of CO2 in an open MPB attacked lodgepole pine (Pinus contorta var. latifolia) canopy (stand height h = 17 m, leaf areas index LAI = 0.55 m2 m-2) in the Interior of British Columbia. The stand has a considerable living secondary structure with a maximum height of 12 m while 99% of the mature pine trees composing the upper canopy are dead. We compared two different methods to accomplish the goal of determining the vertical divergence of the CO2 flux and relate it to the different vegetation layers. Data from a field campaign in July / August 2010 were used. The first method employs eddy-covariance (EC) measurements to determine the vertical source/sink distribution within and above the canopy. The instrumentation included open-path infrared gas analyzers and 3D ultrasonic anemometers. With simultaneous EC measurements at seven heights (z/h = 0.05, 0.15, 0.40, 0.60, 0.85, 1.05 and 1.30) we determined the CO2 uptake or release of the layers between the measurement levels by calculating the flux density divergence and the CO2 storage change in the air of each layer. The second method uses an ecophysiological approach developing a canopy CO2 exchange model. CO2 exchange was directly measured on tree boles and the soil using a portable non-steady-state CO2 chamber system and on leaves using a LI-COR LI-6400 photosynthesis system. Measurements were made during different times of the day and under varying temperature and moisture conditions over the course of the campaign. Airborne light detection and ranging (LIDAR) measurements, and vertical, horizontal and species-specific LAI measurements provided necessary information about the stand structure. We combined this information with measurements of photosynthetically active radiation (PAR) at 6 levels, soil moisture and temperature measurements to model the vertical CO2 source/sink distribution over the course of the campaign. In earlier research, it was found that this stand made the transition from a carbon source to a sink faster than expected (Brown et al., 2010, Agric For Meteorol 150, 254-264). The flux profile showed substantial daytime CO2 uptake below z/h = 0.5, while in the upper canopy there was respiratory CO2 loss. PAR penetrates deep into the canopy with on average almost 60% reaching the ground level (z/h = 0.05). Our study demonstrates that the secondary structure is responsible for significant CO2 uptake, while the understory together with the soil and the dead lodgepole pine trees in the upper canopy are weak CO2 sources, resulting in the stand being a carbon sink. We will discuss the strengths and weaknesses of the two proposed methods with regard to technical challenges and uncertainties, and how the two methods compared overall.

Thermal IR exitance model of a plant canopy

NASA Technical Reports Server (NTRS)

Kimes, D. S.; Smith, J. A.; Link, L. E.

1981-01-01

A thermal IR exitance model of a plant canopy based on a mathematical abstraction of three horizontal layers of vegetation was developed. Canopy geometry within each layer is quantitatively described by the foliage and branch orientation distributions and number density. Given this geometric information for each layer and the driving meteorological variables, a system of energy budget equations was determined and solved for average layer temperatures. These estimated layer temperatures, together with the angular distributions of radiating elements, were used to calculate the emitted thermal IR radiation as a function of view angle above the canopy. The model was applied to a lodgepole pine (Pinus contorta) canopy over a diurnal cycle. Simulated vs measured radiometric average temperatures of the midcanopy layer corresponded with 2 C. Simulation results suggested that canopy geometry can significantly influence the effective radiant temperature recorded at varying sensor view angles.

High-Resolution Three-Dimensional Structural Data Quantify the Impact of Photoinhibition on Long-Term Carbon Gain in Wheat Canopies in the Field1[OPEN

PubMed Central

Burgess, Alexandra J.; Retkute, Renata; Pound, Michael P.; Foulkes, John; Preston, Simon P.; Jensen, Oliver E.; Pridmore, Tony P.; Murchie, Erik H.

2015-01-01

Photoinhibition reduces photosynthetic productivity; however, it is difficult to quantify accurately in complex canopies partly because of a lack of high-resolution structural data on plant canopy architecture, which determines complex fluctuations of light in space and time. Here, we evaluate the effects of photoinhibition on long-term carbon gain (over 1 d) in three different wheat (Triticum aestivum) lines, which are architecturally diverse. We use a unique method for accurate digital three-dimensional reconstruction of canopies growing in the field. The reconstruction method captures unique architectural differences between lines, such as leaf angle, curvature, and leaf density, thus providing a sensitive method of evaluating the productivity of actual canopy structures that previously were difficult or impossible to obtain. We show that complex data on light distribution can be automatically obtained without conventional manual measurements. We use a mathematical model of photosynthesis parameterized by field data consisting of chlorophyll fluorescence, light response curves of carbon dioxide assimilation, and manual confirmation of canopy architecture and light attenuation. Model simulations show that photoinhibition alone can result in substantial reduction in carbon gain, but this is highly dependent on exact canopy architecture and the diurnal dynamics of photoinhibition. The use of such highly realistic canopy reconstructions also allows us to conclude that even a moderate change in leaf angle in upper layers of the wheat canopy led to a large increase in the number of leaves in a severely light-limited state. PMID:26282240

Legacy of Pre-Disturbance Spatial Pattern Determines Early Structural Diversity following Severe Disturbance in Montane Spruce Forests

PubMed Central

Bače, Radek; Svoboda, Miroslav; Janda, Pavel; Morrissey, Robert C.; Wild, Jan; Clear, Jennifer L.; Čada, Vojtěch; Donato, Daniel C.

2015-01-01

Background Severe canopy-removing disturbances are native to many temperate forests and radically alter stand structure, but biotic legacies (surviving elements or patterns) can lend continuity to ecosystem function after such events. Poorly understood is the degree to which the structural complexity of an old-growth forest carries over to the next stand. We asked how pre-disturbance spatial pattern acts as a legacy to influence post-disturbance stand structure, and how this legacy influences the structural diversity within the early-seral stand. Methods Two stem-mapped one-hectare forest plots in the Czech Republic experienced a severe bark beetle outbreak, thus providing before-and-after data on spatial patterns in live and dead trees, crown projections, down logs, and herb cover. Results Post-disturbance stands were dominated by an advanced regeneration layer present before the disturbance. Both major species, Norway spruce (Picea abies) and rowan (Sorbus aucuparia), were strongly self-aggregated and also clustered to former canopy trees, pre-disturbance snags, stumps and logs, suggesting positive overstory to understory neighbourhood effects. Thus, although the disturbance dramatically reduced the stand’s height profile with ~100% mortality of the canopy layer, the spatial structure of post-disturbance stands still closely reflected the pre-disturbance structure. The former upper tree layer influenced advanced regeneration through microsite and light limitation. Under formerly dense canopies, regeneration density was high but relatively homogeneous in height; while in former small gaps with greater herb cover, regeneration density was lower but with greater heterogeneity in heights. Conclusion These findings suggest that pre-disturbance spatial patterns of forests can persist through severe canopy-removing disturbance, and determine the spatial structure of the succeeding stand. Such patterns constitute a subtle but key legacy effect, promoting structural complexity in early-seral forests as well as variable successional pathways and rates. This influence suggests a continuity in spatial ecosystem structure that may well persist through multiple forest generations. PMID:26421726

Passive microwave remote sensing of an anisotropic random-medium layer

NASA Technical Reports Server (NTRS)

Lee, J. K.; Kong, J. A.

1985-01-01

The principle of reciprocity is invoked to calculate the brightness temperatures for passive microwave remote sensing of a two-layer anisotropic random medium. The bistatic scattering coefficients are first computed with the Born approximation and then integrated over the upper hemisphere to be subtracted from unity, in order to obtain the emissivity for the random-medium layer. The theoretical results are illustrated by plotting the emissivities as functions of viewing angles and polarizations. They are used to interpret remote sgnsing data obtained from vegetation canopy where the anisotropic random-medium model applies. Field measurements with corn stalks arranged in various configurations with preferred azimuthal directions are successfully interpreted with this model.

Canopy structure of tropical and sub-tropical rain forests in relation to conifer dominance analysed with a portable LIDAR system

PubMed Central

Aiba, Shin-ichiro; Akutsu, Kosuke; Onoda, Yusuke

2013-01-01

Background and Aims Globally, conifer dominance is restricted to nutient-poor habitats in colder, drier or waterlogged environments, probably due to competition with angiosperms. Analysis of canopy structure is important for understanding the mechanism of plant coexistence in relation to competition for light. Most conifers are shade intolerant, and often have narrow, deep, conical crowns. In this study it is predicted that conifer-admixed forests have less distinct upper canopies and more undulating canopy surfaces than angiosperm-dominated forests. Methods By using a ground-based, portable light detection and ranging (LIDAR) system, canopy structure was quantified for old-growth evergreen rainforests with varying dominance of conifers along altitudinal gradients (200–3100 m a.s.l.) on tropical and sub-tropical mountains (Mount Kinabalu, Malaysian Borneo and Yakushima Island, Japan) that have different conifer floras. Key Results Conifers dominated at higher elevations on both mountains (Podocarpaceae and Araucariaceae on Kinabalu and Cupressaceae and Pinaceae on Yakushima), but conifer dominance also varied with soil/substrate conditions on Kinabalu. Conifer dominance was associated with the existence of large-diameter conifers. Forests with higher conifer dominance showed a canopy height profile (CHP) more skewed towards the understorey on both Kinabalu and Yakushima. In contrast, angiosperm-dominated forests had a CHP skewed towards upper canopy, except for lowland dipterocarp forests and a sub-alpine scrub dominated by small-leaved Leptospermum recurvum (Myrtaceae) on Kinabalu. Forests with a less dense upper canopy had more undulating outer canopy surfaces. Mixed conifer–angiosperm forests on Yakushima and dipterocarp forests on Kinabalu showed similar canopy structures. Conclusions The results generally supported the prediction, suggesting that lower growth of angiosperm trees (except L. recurvum on Kinabalu) in cold and nutrient-poor environments results in a sparser upper canopy, which allows shade-intolerant conifers to co-occur with angiosperm trees either as emergents or as codominants in the open canopy. PMID:24197751

Canopy structure of tropical and sub-tropical rain forests in relation to conifer dominance analysed with a portable LIDAR system.

PubMed

Aiba, Shin-ichiro; Akutsu, Kosuke; Onoda, Yusuke

2013-12-01

Globally, conifer dominance is restricted to nutient-poor habitats in colder, drier or waterlogged environments, probably due to competition with angiosperms. Analysis of canopy structure is important for understanding the mechanism of plant coexistence in relation to competition for light. Most conifers are shade intolerant, and often have narrow, deep, conical crowns. In this study it is predicted that conifer-admixed forests have less distinct upper canopies and more undulating canopy surfaces than angiosperm-dominated forests. By using a ground-based, portable light detection and ranging (LIDAR) system, canopy structure was quantified for old-growth evergreen rainforests with varying dominance of conifers along altitudinal gradients (200-3100 m a.s.l.) on tropical and sub-tropical mountains (Mount Kinabalu, Malaysian Borneo and Yakushima Island, Japan) that have different conifer floras. Conifers dominated at higher elevations on both mountains (Podocarpaceae and Araucariaceae on Kinabalu and Cupressaceae and Pinaceae on Yakushima), but conifer dominance also varied with soil/substrate conditions on Kinabalu. Conifer dominance was associated with the existence of large-diameter conifers. Forests with higher conifer dominance showed a canopy height profile (CHP) more skewed towards the understorey on both Kinabalu and Yakushima. In contrast, angiosperm-dominated forests had a CHP skewed towards upper canopy, except for lowland dipterocarp forests and a sub-alpine scrub dominated by small-leaved Leptospermum recurvum (Myrtaceae) on Kinabalu. Forests with a less dense upper canopy had more undulating outer canopy surfaces. Mixed conifer-angiosperm forests on Yakushima and dipterocarp forests on Kinabalu showed similar canopy structures. The results generally supported the prediction, suggesting that lower growth of angiosperm trees (except L. recurvum on Kinabalu) in cold and nutrient-poor environments results in a sparser upper canopy, which allows shade-intolerant conifers to co-occur with angiosperm trees either as emergents or as codominants in the open canopy.

Discriminating crop and other canopies by overlapping binary image layers

NASA Astrophysics Data System (ADS)

Doi, Ryoichi

2013-02-01

For optimal management of agricultural fields by remote sensing, discrimination of the crop canopy from weeds and other objects is essential. In a digital photograph, a rice canopy was discriminated from a variety of weed and tree canopies and other objects by overlapping binary image layers of red-green-blue and other color components indicating the pixels with target canopy-specific (intensity) values based on the ranges of means ±(3×) standard deviations. By overlapping and merging the binary image layers, the target canopy specificity improved to 0.0015 from 0.027 for the yellow 1× standard deviation binary image layer, which was the best among all combinations of color components and means ±(3×) standard deviations. The most target rice canopy-likely pixels were further identified by limiting the pixels at different luminosity values. The discriminatory power was also visually demonstrated in this manner.

Turbulent mixing and removal of ozone within an Amazon rainforest canopy

NASA Astrophysics Data System (ADS)

Freire, L. S.; Gerken, T.; Ruiz-Plancarte, J.; Wei, D.; Fuentes, J. D.; Katul, G. G.; Dias, N. L.; Acevedo, O. C.; Chamecki, M.

2017-03-01

Simultaneous profiles of turbulence statistics and mean ozone mixing ratio are used to establish a relation between eddy diffusivity and ozone mixing within the Amazon forest. A one-dimensional diffusion model is proposed and used to infer mixing time scales from the eddy diffusivity profiles. Data and model results indicate that during daytime conditions, the upper (lower) half of the canopy is well (partially) mixed most of the time and that most of the vertical extent of the forest can be mixed in less than an hour. During nighttime, most of the canopy is predominantly poorly mixed, except for periods with bursts of intermittent turbulence. Even though turbulence is faster than chemistry during daytime, both processes have comparable time scales in the lower canopy layers during nighttime conditions. Nonchemical loss time scales (associated with stomatal uptake and dry deposition) for the entire forest are comparable to turbulent mixing time scale in the lower canopy during the day and in the entire canopy during the night, indicating a tight coupling between turbulent transport and dry deposition and stomatal uptake processes. Because of the significant time of day and height variability of the turbulent mixing time scale inside the canopy, it is important to take it into account when studying chemical and biophysical processes happening in the forest environment. The method proposed here to estimate turbulent mixing time scales is a reliable alternative to currently used models, especially for situations in which the vertical distribution of the time scale is relevant.

Attributes for MRB_E2RF1 Catchments by Major River Basins in the Conterminous United States: NLCD 2001 Tree Canopy

USGS Publications Warehouse

Wieczorek, Michael; LaMotte, Andrew E.

2010-01-01

This tabular data set represents the mean percent tree canopy from the Canopy Layer of the National Land Cover Dataset 2001 (LaMotte and Wieczorek, 2010), compiled for every MRB_E2RF1 catchment of Major River Basins (MRBs, Crawford and others, 2006). The source data set represents tree canopy percentage for the conterminous United States for 2001. The Canopy Layer of the National Land Cover Data Set for 2001 was produced through a cooperative project conducted by the Multi-Resolution Land Characteristics (MRLC) Consortium. The MRLC Consortium is a partnership of Federal agencies (http://www.mrlc.gov), consisting of the U.S. Geological Survey (USGS), the National Oceanic and Atmospheric Administration (NOAA), the U.S. Environmental Protection Agency (USEPA), the U.S. Department of Agriculture (USDA), the U.S. Forest Service (USFS), the National Park Service (NPS), the U.S. Fish and Wildlife Service (USFWS), the Bureau of Land Management (BLM), and the USDA Natural Resources Conservation Service (NRCS). The MRB_E2RF1 catchments are based on a modified version of the U.S. Environmental Protection Agency's (USEPA) ERF1_2 and include enhancements to support national and regional-scale surface-water quality modeling (Nolan and others, 2002; Brakebill and others, 2011). Data were compiled for every MRB_E2RF1 catchment for the conterminous United States covering New England and Mid-Atlantic (MRB1), South Atlantic-Gulf and Tennessee (MRB2), the Great Lakes, Ohio, Upper Mississippi, and Souris-Red-Rainy (MRB3), the Missouri (MRB4), the Lower Mississippi, Arkansas-White-Red, and Texas-Gulf (MRB5), the Rio Grande, Colorado, and the Great basin (MRB6), the Pacific Northwest (MRB7) river basins, and California (MRB8).

What Does a Multilayer Canopy Model Tell Us About Our Current Understanding of Snow-Canopy Unloading?

NASA Astrophysics Data System (ADS)

McGowan, L. E.; Paw U, K. T.; Dahlke, H. E.

2017-12-01

In the Western U.S., future water resources depend on the forested mountain snowpack. The variations in and estimates of forest mountain snow volume are vital to projecting annual water availability; yet, snow forest processes are not fully known. Most snow models calculate snow-canopy unloading based on time, temperature, Leaf Area Index (LAI), and/or wind speed. While models crudely consider the canopy shape via LAI, current models typically do not consider the vertical canopy structure or varied energetics within multiple canopy layers. Vertical canopy structure influences the spatiotemporal distribution of snow, and therefore ultimately determines the degree and extent by which snow alters both the surface energy balance and water availability. Within the canopy both the snowpack and energetic exposures to the snowpack (wind, shortwave and longwave radiation, turbulent heat fluxes etc.) vary widely in the vertical. The water and energy balance in each layer is dependent on all other layers. For example, increased snow canopy content in the top of the canopy will reduce available shortwave radiation at the bottom and snow unloading in a mid-layer can cascade and remove snow from all the lower layers. We examined vertical interactions and structures of the forest canopy on the impact of unloading utilizing the Advanced Canopy-Atmosphere-Soil-Algorithm (ACASA), a multilayer soil-vegetation-atmosphere numerical model based on higher-order closure of turbulence equations. Our results demonstrate how a multilayer model can be used to elucidate the physical processes of snow unloading, and could help researchers better parameterize unloading in snow-hydrology models.

Four things we don't know about scalar transfer from plant canopies

NASA Astrophysics Data System (ADS)

Finnigan, J. J.

2009-04-01

In terrestrial plant canopies, turbulent exchange of water through evapotranspiration is intimately bound up with exchange of other scalars, heat and carbon dioxide in particular. Turbulent transport is rarely the process limiting exchange of these scalars between the biosphere and the atmosphere. However, in measurement programs like FLUXNET or when we parameterise surface exchange at the canopy scale in climate or weather models we must understand the mechanism of turbulent exchange in detail. In this talk we survey four current obstacles to extending our understanding of canopy turbulence from the idealised case of homogeneous flow in neutral stratification to complex flows in stable and unstable conditions. 1. Canopy eddy structure and the hydrodynamic instability Recent analysis of canopy LES and wind tunnel simulations has revealed the ‘two hairpin' structure of a characteristic canopy eddy. This structure explains a large body of results from a wide range of canopies and redefines the Roughness Sub Layer (RSL) as an asymptotic layer similar to the logarithmic and outer layers of the Planetary Boundary Layer. However, the nature of the non-linear ‘mixing-layer' instability process that gives canopy/RSL eddies their coherence and enhanced transport efficiency (as compared to eddies in the logarithmic layer above) is poorly understood so we do not know how resilient this instability and the eddies that depend upon it are to large scale flow perturbations or to changes in stability. 2. Turbulent Schmidt and Prandtl Numbers The scalar RSL can be defined as the layer across which the turbulent Schmidt (Sc) and Prandtl (Pr) numbers in neutral stratification change from their canopy top values of ~0.5, typical of mixing layers, to their logarithmic layer values of ~1.0, typical of boundary layers. The value of Sc or Pr is a critical parameter when adjusting Monin-Obukhov similarity theory (MOST) for the proximity of the canopy. The need for such adjustments has been recognized for several decades but they are still often ignored with serious consequences for prognostic models. However, at the present time we have only weak experimental evidence for the values of Sc and Pr in neutral conditions. More importantly, our poor understanding of the processes that set Sc and Pr and control their variation with diabatic stability is a barrier to generalizing MOST for use above tall canopies. 3. Diabatic stability and canopy flows As radiative cooling proceeds after sundown, turbulence within dense canopies can collapse suddenly leading to decoupling of the canopy layer from the boundary layer above. Theory suggests that this process should occur because of the different transport mechanisms of scalars and momentum at leaf level. So far no definitive experimental results are available to confirm or refute this theory or to set bounds on its applicability. This has important implications for transport and canopy microclimate. In particular we need to know how the controlling time scales of this process depend upon canopy density and radiative transfer. 4. Gravity currents Deep coherent gravity currents are often observed on long hill slopes covered with tall canopies. The process of turbulent collapse after sundown mentioned in (3) above produces a deep stable layer which is decoupled from the boundary layer above and must come into a new dynamic balance involving the hydrostatic and hydrodynamic pressure gradients and canopy drag. Scale analysis suggests that the strength of such currents depends upon hill length rather than hill slope while wind tunnel experiments reveal that they can penetrate onto flat ground far upwind of the hills on which they originate. Many field sites where flow is well behaved during the day can, therefore, be affected by such gravity flows at night. The parameters controlling the unsteady dynamics of this situation are not known but are of critical importance to measurements of water and other trace gas exchange over the diurnal cycle. The four topics chosen move from the fundamentals of canopy eddy structure to the impact at large scale of microscale processes. Each requires us to consider simultaneously processes from the leaf to the whole canopy scale and each will require effort from the whole community if serious progress is to be made.

Changes in photosynthetic rate and stress volatile emissions through desiccation-rehydration cycles in desiccation-tolerant epiphytic filmy ferns (Hymenophyllaceae).

PubMed

Niinemets, Ülo; Bravo, León A; Copolovici, Lucian

2018-07-01

Exposure to recurrent desiccation cycles carries a risk of accumulation of reactive oxygen species that can impair leaf physiological activity upon rehydration, but changes in filmy fern stress status through desiccation and rewatering cycles have been poorly studied. We studied foliage photosynthetic rate and volatile marker compounds characterizing cell wall modifications (methanol) and stress development (lipoxygenase [LOX] pathway volatiles and methanol) through desiccation-rewatering cycles in lower-canopy species Hymenoglossum cruentum and Hymenophyllum caudiculatum, lower- to upper-canopy species Hymenophyllum plicatum and upper-canopy species Hymenophyllum dentatum sampled from a common environment and hypothesized that lower canopy species respond more strongly to desiccation and rewatering. In all species, rates of photosynthesis and LOX volatile emission decreased with progression of desiccation, but LOX emission decreased with a slower rate than photosynthesis. Rewatering first led to an emission burst of LOX volatiles followed by methanol, indicating that the oxidative burst was elicited in the symplast and further propagated to cell walls. Changes in LOX emissions were more pronounced in the upper-canopy species that had a greater photosynthetic activity and likely a greater rate of production of photooxidants. We conclude that rewatering induces the most severe stress in filmy ferns, especially in the upper canopy species. © 2018 John Wiley & Sons Ltd.

Large-Eddy-Simulation of a flow over a submerged rigid canopy

NASA Astrophysics Data System (ADS)

Monti, Alessandro; Omidyeganeh, Mohammad; Pinelli, Alfredo

2017-11-01

We have performed a wall-resolved Large-Eddy-Simulation of flow over a shallow submerged rigid canopy (H / h = 4 ; H and h are the open channel and the canopy heights respectively) in a transitional/dense regime (Nepf ARFM 44, 2011), at low Reynolds number (Reb =Ubulk H / ν = 6000). An immersed boundary method (Favier et al. JCP 261, 2013) has been adopted to represent filamentous rigid elements of the canopy. The presence of the permeable and porous canopy induces a typical inflection point in the mean velocity profile, depicting two separated and developed layers, outer boundary layer and in-canopy uniform flow. The aim of the work is to explore and unravel the mechanisms of the interaction between the fluid flow and the rigid canopy by identifying the physical parameters that govern the mixing mechanisms within the different flow layers and by exploring the impact of the sweep/ejection events at the canopy edge. The results show that the flow is characterised by large scale stream- and span-wise vortices and regions of different dynamics that affect also the filamentous layer, hence the mixing mechanisms.

A New, Two-layer Canopy Module For The Detailed Snow Model SNOWPACK

NASA Astrophysics Data System (ADS)

Gouttevin, I.; Lehning, M.; Jonas, T.; Gustafsson, D.; Mölder, M.

2014-12-01

A new, two-layer canopy module with thermal inertia for the detailed snow model SNOWPACK is presented. Compared to the old, one-layered canopy formulation with no heat mass, this module now offers a level of physical detail consistent with the detailed snow and soil representation in SNOWPACK. The new canopy model is designed to reproduce the difference in thermal regimes between leafy and woody canopy elements and their impact on the underlying snowpack energy balance. The new model is validated against data from an Alpine and a boreal site. Comparisons of modelled sub-canopy thermal radiations to stand-scale observations at Alptal, Switzerland, demonstrate the improvements induced by our new parameterizations. The main effect is a more realistic simulation of the canopy night-time drop in temperatures. The lower drop is induced by both thermal inertia and the two-layer representation. A specific result is that such a performance cannot be achieved by a single-layered canopy model. The impact of the new parameterizations on the modelled dynamics of the sub-canopy snowpack is analysed and yields consistent results, but the frequent occurrence of mixed-precipitation events at Alptal prevents a conclusive assessment of model performances against snow data.Without specific tuning, the model is also able to reproduce the measured summertime tree trunk temperatures and biomass heat storage at the boreal site of Norunda, Sweden, with an increased accuracy in amplitude and phase. Overall, the SNOWPACK model with its enhanced canopy module constitutes a unique (in its physical process representation) atmosphere-to-soil-through-canopy-and-snow modelling chain.

Evaluating the performance of land surface model ORCHIDEE-CAN v1.0 on water and energy flux estimation with a single- and multi-layer energy budget scheme

NASA Astrophysics Data System (ADS)

Chen, Yiying; Ryder, James; Bastrikov, Vladislav; McGrath, Matthew J.; Naudts, Kim; Otto, Juliane; Ottlé, Catherine; Peylin, Philippe; Polcher, Jan; Valade, Aude; Black, Andrew; Elbers, Jan A.; Moors, Eddy; Foken, Thomas; van Gorsel, Eva; Haverd, Vanessa; Heinesch, Bernard; Tiedemann, Frank; Knohl, Alexander; Launiainen, Samuli; Loustau, Denis; Ogée, Jérôme; Vessala, Timo; Luyssaert, Sebastiaan

2016-09-01

Canopy structure is one of the most important vegetation characteristics for land-atmosphere interactions, as it determines the energy and scalar exchanges between the land surface and the overlying air mass. In this study we evaluated the performance of a newly developed multi-layer energy budget in the ORCHIDEE-CAN v1.0 land surface model (Organising Carbon and Hydrology In Dynamic Ecosystems - CANopy), which simulates canopy structure and can be coupled to an atmospheric model using an implicit coupling procedure. We aim to provide a set of acceptable parameter values for a range of forest types. Top-canopy and sub-canopy flux observations from eight sites were collected in order to conduct this evaluation. The sites crossed climate zones from temperate to boreal and the vegetation types included deciduous, evergreen broad-leaved and evergreen needle-leaved forest with a maximum leaf area index (LAI; all-sided) ranging from 3.5 to 7.0. The parametrization approach proposed in this study was based on three selected physical processes - namely the diffusion, advection, and turbulent mixing within the canopy. Short-term sub-canopy observations and long-term surface fluxes were used to calibrate the parameters in the sub-canopy radiation, turbulence, and resistance modules with an automatic tuning process. The multi-layer model was found to capture the dynamics of sub-canopy turbulence, temperature, and energy fluxes. The performance of the new multi-layer model was further compared against the existing single-layer model. Although the multi-layer model simulation results showed few or no improvements to both the nighttime energy balance and energy partitioning during winter compared with a single-layer model simulation, the increased model complexity does provide a more detailed description of the canopy micrometeorology of various forest types. The multi-layer model links to potential future environmental and ecological studies such as the assessment of in-canopy species vulnerability to climate change, the climate effects of disturbance intensities and frequencies, and the consequences of biogenic volatile organic compound (BVOC) emissions from the terrestrial ecosystem.

Development and applications of the LANDFIRE forest structure layers

Treesearch

Chris Toney; Birgit Peterson; Don Long; Russ Parsons; Greg Cohn

2012-01-01

The LANDFIRE program is developing 2010 maps of vegetation and wildland fuel attributes for the United States at 30-meter resolution. Currently available vegetation layers include ca. 2001 and 2008 forest canopy cover and canopy height derived from Landsat and Forest Inventory and Analysis (FIA) plot measurements. The LANDFIRE canopy cover layer for the conterminous...

Canopy-wake dynamics: the failure of the constant flux layer

NASA Astrophysics Data System (ADS)

Stefan, H. G.; Markfort, C. D.; Porte-Agel, F.

2013-12-01

The atmospheric boundary layer adjustment at the abrupt transition from a canopy (forest) to a flat surface (land or water) was investigated in a wind tunnel experiment. Detailed measurements examining the effect of canopy turbulence on flow separation, reduced surface shear stress and wake recovery are compared to data for the classical case of a solid backward-facing step. Results provide new insights into the data interpretation for flux estimation by eddy-covariance and flux gradient methods and for the assessment of surface boundary conditions in turbulence models of the atmospheric boundary layer in complex landscapes and over water bodies affected by canopy wakes. The wind tunnel results indicate that the wake of a forest canopy strongly affects surface momentum flux within a distance of 35 - 100 times the step or canopy height, and mean turbulence quantities require distances of at least 100 times the canopy height to adjust to the new surface. The near-surface mixing length in the wake exhibits characteristic length scales of canopy flows at the canopy edge, of the flow separation in the near wake and adjusts to surface layer scaling in the far wake. Components of the momentum budget are examined individually to determine the impact of the wake. The results demonstrate why a constant flux layer does not form until far downwind in the wake. An empirical model for surface shear stress distribution from a forest to a clearing or lake is proposed.

A Canopy Density Model for Planar Orchard Target Detection Based on Ultrasonic Sensors

PubMed Central

Li, Hanzhe; Zhai, Changyuan; Weckler, Paul; Wang, Ning; Yang, Shuo; Zhang, Bo

2016-01-01

Orchard target-oriented variable rate spraying is an effective method to reduce pesticide drift and excessive residues. To accomplish this task, the orchard targets’ characteristic information is needed to control liquid flow rate and airflow rate. One of the most important characteristics is the canopy density. In order to establish the canopy density model for a planar orchard target which is indispensable for canopy density calculation, a target density detection testing system was developed based on an ultrasonic sensor. A time-domain energy analysis method was employed to analyze the ultrasonic signal. Orthogonal regression central composite experiments were designed and conducted using man-made canopies of known density with three or four layers of leaves. Two model equations were obtained, of which the model for the canopies with four layers was found to be the most reliable. A verification test was conducted with different layers at the same density values and detecting distances. The test results showed that the relative errors of model density values and actual values of five, four, three and two layers of leaves were acceptable, while the maximum relative errors were 17.68%, 25.64%, 21.33% and 29.92%, respectively. It also suggested the model equation with four layers had a good applicability with different layers which increased with adjacent layers. PMID:28029132

Fruit position within the canopy affects kernel lipid composition of hazelnuts.

PubMed

Pannico, Antonio; Cirillo, Chiara; Giaccone, Matteo; Scognamiglio, Pasquale; Romano, Raffaele; Caporaso, Nicola; Sacchi, Raffaele; Basile, Boris

2017-11-01

The aim of this research was to study the variability in kernel composition within the canopy of hazelnut trees. Kernel fresh and dry weight increased linearly with fruit height above the ground. Fat content decreased, while protein and ash content increased, from the bottom to the top layers of the canopy. The level of unsaturation of fatty acids decreased from the bottom to the top of the canopy. Thus, the kernels located in the bottom layers of the canopy appear to be more interesting from a nutritional point of view, but their lipids may be more exposed to oxidation. The content of different phytosterols increased progressively from bottom to top canopy layers. Most of these effects correlated with the pattern in light distribution inside the canopy. The results of this study indicate that fruit position within the canopy is an important factor in determining hazelnut kernel growth and composition. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Vertical stratification of beetles (Coleoptera) and flies (Diptera) in temperate forest canopies.

PubMed

Maguire, Dorothy Y; Robert, Katleen; Brochu, Kristen; Larrivée, Maxim; Buddle, Christopher M; Wheeler, Terry A

2014-02-01

Forest canopies support high arthropod biodiversity, but in temperate canopies, little is known about the spatial distribution of these arthropods. This is an important first step toward understanding ecological roles of insects in temperate canopies. The objective of this study was to assess differences in the species composition of two dominant and diverse taxa (Diptera and Coleoptera) along a vertical gradient in temperate deciduous forest canopies. Five sugar maple trees from each of three deciduous forest sites in southern Quebec were sampled using a combination of window and trunk traps placed in three vertical strata (understory, mid-canopy, and upper-canopy) for three sampling periods throughout the summer. Coleoptera species richness and abundance did not differ between canopy heights, but more specimens and species of Diptera were collected in the upper-canopy. Community composition of Coleoptera and Diptera varied significantly by trap height. Window traps collected more specimens and species of Coleoptera than trunk traps, although both trap types should be used to maximize representation of the entire Coleoptera community. There were no differences in abundance, diversity, or composition of Diptera collected between trap types. Our data confirm the relevance of sampling all strata in a forest when studying canopy arthropod biodiversity.

Unexpected high diversity of galling insects in the Amazonian upper canopy: the savanna out there.

PubMed

Julião, Genimar R; Venticinque, Eduardo M; Fernandes, G Wilson; Price, Peter W

2014-01-01

A relatively large number of studies reassert the strong relationship between galling insect diversity and extreme hydric and thermal status in some habitats, and an overall pattern of a greater number of galling species in the understory of scleromorphic vegetation. We compared galling insect diversity in the forest canopy and its relationship with tree richness among upland terra firme, várzea, and igapó floodplains in Amazonia, Brazil. The soils of these forest types have highly different hydric and nutritional status. Overall, we examined the upper layer of 1,091 tree crowns. Galling species richness and abundance were higher in terra firme forests compared to várzea and igapó forests. GLM-ANCOVA models revealed that the number of tree species sampled in each forest type was determinant in the gall-forming insect diversity. The ratio between galling insect richness and number of tree species sampled (GIR/TSS ratio) was higher in the terra firme forest and in seasonally flooded igapó, while the várzea presented the lowest GIR/TSS ratio. In this study, we recorded unprecedented values of galling species diversity and abundance per sampling point. The GIR/TSS ratio from várzea was approximately 2.5 times higher than the highest value of this ratio ever reported in the literature. Based on this fact, we ascertained that várzea and igapó floodplain forests (with lower GIA and GIR), together with the speciose terra firme galling community emerge as the gall diversity apex landscape among all biogeographic regions already investigated. Contrary to expectation, our results also support the "harsh environment hypothesis", and unveil the Amazonian upper canopy as similar to Mediterranean vegetation habitats, hygrothermically stressed environments with leaf temperature at lethal limits and high levels of leaf sclerophylly.

Out on a limb: Thermal microenvironments in the tropical forest canopy and their relevance to ants.

PubMed

Stark, Alyssa Y; Adams, Benjamin J; Fredley, Jennifer L; Yanoviak, Stephen P

2017-10-01

Small, cursorial ectotherms like ants often are immersed in the superheated air layers that develop millimeters above exposed, insolated surfaces (i.e., the thermal boundary layer). We quantified the thermal microenvironments around tree branches in the tropical rainforest canopy, and explored the effects of substrate color on the internal body temperature and species composition of arboreal ants. Branch temperatures during the day (09:00-16:00) were hottest (often > 50°C) and most variable on the upper surface, while the lowest and least variable temperatures occurred on the underside. Temperatures on black substrates declined with increasing distance above the surface in both the field and the laboratory. By contrast, a micro-scale temperature inversion occurred above white substrates. Wind events (ca. 2ms -1 ) eliminated these patterns. Internal temperatures of bodies of Cephalotes atratus workers experimentally heated in the laboratory were 6°C warmer on white vs. black substrates, and 6°C cooler than ambient in windy conditions. The composition of ant species foraging at baits differed between black-painted and unpainted tree branches, with a tendency for smaller ants to avoid the significantly hotter black surfaces. Collectively, these outcomes show that ants traversing canopy branches experience very heterogeneous thermal microenvironments that are partly influenced in predictable ways by branch surface coloration and breezy conditions. Copyright © 2017 Elsevier Ltd. All rights reserved.

[Effect of thinning intensities on fruiting regularities of Quercus liaotungensis forests in Huang-long and Qiaoshan mountains.

PubMed

Huang, Cai Zhi; Zhang, Wen Hui; Li, Gang; Yu, Shi Chuan; You, Jian Jian

2016-11-18

In order to clarify the impact of thinning intensities on fruiting regularity of Quercus liaotungensis forests, we took the Q. liaotungensis half-mature forests in Huanglong and Qiaoshan mountains on south of the Loess Plateau as the object of study, which were under close-to-natural management of different thinning intensities (CK, 10%, 20% and 30%). An analysis was made on stand density and percent of seed trees, seed number of sample tree and unit area, seed spatial distributions, seed characteristics of the Q. liaotungensis forests after 5 years of thinning. The results showed that, percent of seed trees, seed number per sample tree and percent of developed seeds of Q. liaotungensis forests increased with the increasing intensity, and showed a pattern of 30%>20%>10%>CK. Seed number per area reached the maximum number under 20% thinning, and showed a pattern of 20%>30%>CK>10%. From the seed spatial distribution in the canopy, the upper accounted for 73.6%, while the lower had 26.4%. The sunny side of canopy layer set relatively the most fruits of 65.8%, shady side only had 34.2%. Under thinning, further improving was geater under lower canopy than under upper canopy and so was on shady side than on sunny side. The seed long diameter, seed short diameter and 1000-seed mass of Q. liaotungensis forests increased with the increasing intensity, which reached the maximum under 30% thinning. 10% thinning did not significantly impact Q. liaotungensis fruiting, the thinning intensity of 20% was most conducive to the seed quantity and quality improvement of Q. liaotungensis, while the thinning intensity of 30% did not improve the fruiting, and lowered the total number of seeds. It was proposed that 20% thinning should be chosen (canopy density of 0.7) to effectively improve fruiting and quality of Q. liaotungensis.

Influence of a forest canopy on velocity and temperature profiles under synoptic conditions

NASA Astrophysics Data System (ADS)

Pattantyus, A.; Hocut, C. M.; Wang, Y.; Creegan, E.; Krishnamurthy, R.; Otarola-Bust, S.; Leo, L. S.; Fernando, H. J. S.

2017-12-01

Numerous field campaigns have found the importance of surface conditions on boundary layer evolution. Specifically, soil properties were found to control surface fluxes of heat, moisture, and momentum that significantly modulated the atmospheric boundary layer (ABL) over flat and sparsely vegetated surfaces. There have been increasing numbers of studies related to canopy impacts on the boundary layer, such as CHATS, however few canopy studies over complex terrain have been performed with limited instrumentation. The recent Perdigão campaign greatly augmented the previous datasets available by instrumenting a unique, parallel ridge mountain in Perdigão, Portugal in unprecedented spatial and temporal resolution using traditional mast mounted sensors, instrumented aerial platforms, and remote sensing instrumentation. To aid the canopy studies, the Army Research Laboratory deployed sonic anemometers within the canopy transecting the ridges perpendicularly and placed five additional heavily instrumented meteorological masts on the northeast facing slope to investigate detailed slope flows. At each of these towers, there was an average of six levels of temperature, relative humidity, and wind sensors located above & below the canopy height which allowed a detailed study of the sub-canopy layer. In addition to the towers, two scanning Doppler LiDARs were oriented such that they performed synchronized dual Doppler virtual tower scans, extending from the canopy interface to several hundred meters above. Synoptically forced periods were analyzed to examine: the ABL structure of temperature, moisture, wind, and turbulent kinetic energy. Of particular interest are the shear layer at the canopy interface, recirculation events, as well as ejection and sweep events within the canopy and how these modify surface fluxes along the slopes.

Investigation of the flow inside an urban canopy immersed into an atmospheric boundary layer using laser Doppler anemometry

NASA Astrophysics Data System (ADS)

Herpin, Sophie; Perret, Laurent; Mathis, Romain; Tanguy, Christian; Lasserre, Jean-Jacques

2018-05-01

Laser Doppler anemometry (LDA) is used to investigate the flow inside an idealized urban canopy consisting of a staggered array of cubes with a 25% density immersed into an atmospheric boundary layer with a Reynolds number of δ ^+=32{,}300. The boundary layer thickness to cube height ratio (δ /h=22.7) is large enough to be representative of atmospheric surface layer in neutral conditions. The LDA measurements give access to pointwise time-resolved data at several positions inside the canopy (z=h/4, h/2, and h). Synchronized hot-wire measurements above the canopy (inertial region and roughness sublayer) are also realized to get access to interactions between the different flow regions. The wall-normal mean velocity profile and Reynolds stresses show a good agreement with available data in the literature, although some differences are observed on the standard deviation of the spanwise component. A detailed spectral and integral time scale analysis inside the canopy is then carried out. No clear footprint of a periodic vortex shedding on the sides of the cubes could be identified on the power spectra, owing to the multiple cube-to-cube interactions occuring within a canopy with a building density in the wake interference regime. Results also suggest that interactions between the most energetics scales of the boundary layer and those related to the cube canopy take place, leading to a broadening of the energy peak in the spectra within the canopy. This is confirmed by the analysis of coherence results between the flow inside and above the canopy. It is shown that linear interactions mechanisms are significant, but reduced compared to smooth-wall boundary-layer flow. To our knowledge, this is the first time such results are shown on the dynamics of the flow inside an urban canopy.

Dry deposition profile of small particles within a model spruce canopy.

PubMed

Ould-Dada, Zitouni

2002-03-08

Data on dry deposition of 0.82 microm MMAD uranium particles to a small scale, 'model' Norway spruce (Picea abies) canopy have been determined by means of wind tunnel experiments. These are presented for both the total canopy and for five horizontal layers within the canopy. The results show a complex pattern of deposition within the canopy. The highest deposition velocity Vg (0.19 cm s(-1)) was recorded for the topmost layer within the canopy (i.e. the layer in direct contact with the boundary layer) whereas the lowest Vg (0.02 cm s(-1)) occurred at the soil surface. Vertical penetration of depositing aerosol through the canopy was influenced by variations in biomass, wind velocity and turbulence within the canopy. A total canopy Vg of 0.5 cm s(-1) was obtained and this is in line with field measurements of Vg reported in literature for both anthropogenic and radionuclide aerosols of similar size ranges. Extrapolation of wind tunnel data to 'real' forest canopies is discussed. The information presented here is of importance in predicting the likely contribution of dry deposition of aerosols to pollutant inputs to forest ecosystems, particularly in the context of radioactive aerosol releases from nuclear installations. The application of the present data may also be appropriate for other pollutant aerosols such as SO4, NO3 and NH4, which are characterised by particle sizes in the range used in this study.

Light-driven growth in Amazon evergreen forests explained by seasonal variations of vertical canopy structure.

PubMed

Tang, Hao; Dubayah, Ralph

2017-03-07

Light-regime variability is an important limiting factor constraining tree growth in tropical forests. However, there is considerable debate about whether radiation-induced green-up during the dry season is real, or an apparent artifact of the remote-sensing techniques used to infer seasonal changes in canopy leaf area. Direct and widespread observations of vertical canopy structures that drive radiation regimes have been largely absent. Here we analyze seasonal dynamic patterns between the canopy and understory layers in Amazon evergreen forests using observations of vertical canopy structure from a spaceborne lidar. We discovered that net leaf flushing of the canopy layer mainly occurs in early dry season, and is followed by net abscission in late dry season that coincides with increasing leaf area of the understory layer. Our observations of understory development from lidar either weakly respond to or are not correlated to seasonal variations in precipitation or insolation, but are strongly related to the seasonal structural dynamics of the canopy layer. We hypothesize that understory growth is driven by increased light gaps caused by seasonal variations of the canopy. This light-regime variability that exists in both spatial and temporal domains can better reveal the drought-induced green-up phenomenon, which appears less obvious when treating the Amazon forests as a whole.

Automated lidar-derived canopy height estimates for the Upper Mississippi River System

USGS Publications Warehouse

Hlavacek, Enrika

2015-01-01

Land cover/land use (LCU) classifications serve as important decision support products for researchers and land managers. The LCU classifications produced by the U.S. Geological Survey’s Upper Midwest Environmental Sciences Center (UMESC) include canopy height estimates that are assigned through manual aerial photography interpretation techniques. In an effort to improve upon these techniques, this project investigated the use of high-density lidar data for the Upper Mississippi River System to determine canopy height. An ArcGIS tool was developed to automatically derive height modifier information based on the extent of land cover features for forest classes. The measurement of canopy height included a calculation of the average height from lidar point cloud data as well as the inclusion of a local maximum filter to identify individual tree canopies. Results were compared to original manually interpreted height modifiers and to field survey data from U.S. Forest Service Forest Inventory and Analysis plots. This project demonstrated the effectiveness of utilizing lidar data to more efficiently assign height modifier attributes to LCU classifications produced by the UMESC.

Application of Lidar remote sensing to the estimation of forest canopy and stand structure

NASA Astrophysics Data System (ADS)

Lefsky, Michael Andrew

A new remote sensing instrument, SLICER (Scanning Lidar Imager of Canopies by Echo Recovery), has been applied to the problem of remote sensing the canopy and stand structure of two groups of deciduous forests, Tulip Poplar-Oak stands in the vicinity of Annapolis, MD. and bottomland hardwood stands near Williamston, NC. The ability of the SLICER instrument to remotely sense the vertical distribution of canopy structure (Canopy Height Profile), bulk canopy transmittance, and several indices of canopy height has been successfully validated using twelve stands with coincident field and SLICER estimates of canopy structure. Principal components analysis has been applied to canopy height profiles from both field sites, and three significant factors were identified, each closely related to the amount of foliage in a recognizable layer of the forest, either understory, midstory, or overstory. The distribution of canopy structure to these layers is significantly correlated with the size and number of stems supporting them. The same layered structure was shown to apply to both field and SLICER remotely sensed canopy height profiles, and to apply to SLICER remotely sensed canopy profiles from both the bottomland hardwood stands in the coastal plain of North Carolina, and to mesic Tulip-Poplars stands in the upland coastal plain of Maryland. Linear regressions have demonstrated that canopy and stand structure are correlated to both a statistically significant and useful degree. Stand age and stem density is more highly correlated to stand height, while stand basal area and aboveground biomass are more closely related to a new measure of canopy structure, the quadratic mean canopy height. A geometric model of canopy structure has been shown to explain the differing relationships between canopy structure and stand basal area for stands of Eastern Deciduous Forest and Douglas Fir Forest.

Diurnal Patterns of Direct Light Extinction in Two Tropical Forest Canopies

NASA Astrophysics Data System (ADS)

Cushman, K.; Silva, C. E.; Kellner, J. R.

2016-12-01

The extent to which net ecosystem production is light-limited in Neotropical forests is poorly understood. This is due in part to our limited knowledge of how light moves through complex canopies to different layers of leaves, and the extent to which structural changes in canopies modify the amount of light absorbed by the landscape to drive photosynthesis. Systematic diurnal changes in solar angle, leaf angle, and wind speed suggest that patterns of light attenuation change over the course of the day in tropical forests. In this study, we characterize the extinction of direct light through the canopies of two forests in Panama using high-resolution, three-dimensional measurements from a small footprint, discrete return airborne laser scanner mounted on the gondola of a canopy crane. We hypothesized that light penetrates deeper into canopies during the middle of the day because changes in leaf angle by light-saturated leaves temporarily reduce effective canopy leaf area, and because greater wind speeds increase sunflecks. Also, we hypothesized that rates of light extinction are greater in the wetter forest that receives less direct sunlight because light saturation in upper leaves is less prevalent. We collected laser measurements with resolution of approximately 5,000 points per square meter of ground every 90 minutes over the course of one day each at Parque Natural Metropolitano (1740 mm annual rainfall) and Parque Nacional San Lorenzo (3300 mm annual rainfall) during the dry season in April, 2016. Using a voxel-based approach, we compared the actual versus potential distance traveled by laser beams through each volume of the canopy. We fit an exponential model to quantify the rate of light extinction. We found that rates of light extinction vary spatially, temporally, and by site. These results indicate that variation in forest structure changes patterns of light attenuation through the canopy over multiple scales.

The influence of current speed and vegetation density on flow structure in two macrotidal eelgrass canopies

USGS Publications Warehouse

Lacy, Jessica R.; Wyllie-Echeverria, Sandy

2011-01-01

The influence of eelgrass (Zostera marina) on near-bed currents, turbulence, and drag was investigated at three sites in two eelgrass canopies of differing density and at one unvegetated site in the San Juan archipelago of Puget Sound, Washington, USA. Eelgrass blade length exceeded 1 m. Velocity profiles up to 1.5 m above the sea floor were collected over a spring-neap tidal cycle with a downward-looking pulse-coherent acoustic Doppler profiler above the canopies and two acoustic Doppler velocimeters within the canopies. The eelgrass attenuated currents by a minimum of 40%, and by more than 70% at the most densely vegetated site. Attenuation decreased with increasing current speed. The data were compared to the shear-layer model of vegetated flows and the displaced logarithmic model. Velocity profiles outside the meadows were logarithmic. Within the canopies, most profiles were consistent with the shear-layer model, with a logarithmic layer above the canopy. However, at the less-dense sites, when currents were strong, shear at the sea floor and above the canopy was significant relative to shear at the top of the canopy, and the velocity profiles more closely resembled those in a rough-wall boundary layer. Turbulence was strong at the canopy top and decreased with height. Friction velocity at the canopy top was 1.5–2 times greater than at the unvegetated, sandy site. The coefficient of drag CD on the overlying flow derived from the logarithmic velocity profile above the canopy, was 3–8 times greater than at the unvegetated site (0.01–0.023 vs. 2.9 × 10−3).

[Carbon density distribution characteristics and influencing factors in aerially seeded Pinus massoniana plantations].

PubMed

Pan, Ping; Han, Tian Yi; OuYang, Xun Zhi; Liu, Yuan Qiu; Zang, Hao; Ning, Jin Kui; Yang, Yang

2017-12-01

The distribution characteristics of carbon density under aerially seeded Pinus massoniana plantations in Ganzhou City of Jiangxi Province were studied. Total 15 factors, including site, stand, understory vegetation, litter and so on were selected to establish a relationship model between stand carbon density and influencing factors, and the main influencing factors were also screened. The results showed that the average carbon density was 98.29 t·hm -2 at stand level with soil layer (49.58 t·hm -2 ) > tree layer (45.25 t·hm -2 ) > understory vegetation layer (2.23 t·hm -2 ) > litter layer (1.23 t·hm -2 ). Significantly positive correlations were found among the tree, litter and soil layers, but not among the other layers. The main factors were tree density, avera-ge diameter at breast height (DBH), soil thickness, slope position, stand age and canopy density to affect carbon density in aerially seeded P. massoniana plantations. The partial correlation coefficients of the six main factors ranged from 0.331 to 0.434 with significance by t test. The multiple correlation coefficient of quantitative model I reached 0.796 with significance by F test (F=9.28). For stand density, the best tree density and canopy density were 1500-2100 plants·hm -2 and 0.4-0.7, respectively. The moderate density was helpful to improve ecosystem carbon sequestration. The carbon density increased with increasing stand age, DBH and soil thickness, and was higher in lower than middle and upper slope positions.

Comparing alternative tree canopy cover estimates derived from digital aerial photography and field-based assessments

Treesearch

Tracey S. Frescino; Gretchen G. Moisen

2012-01-01

A spatially-explicit representation of live tree canopy cover, such as the National Land Cover Dataset (NLCD) percent tree canopy cover layer, is a valuable tool for many applications, such as defining forest land, delineating wildlife habitat, estimating carbon, and modeling fire risk and behavior. These layers are generated by predictive models wherein their accuracy...

Carbon isotope composition of ambient CO2 and recycling: a matrix simulation model

USGS Publications Warehouse

da Silveira Lobo Sternberg, Leonel; DeAngelis, Donald L.

2002-01-01

The relationship between isotopic composition and concentration of ambient CO2 in a canopy and its associated convective boundary layer was modeled. The model divides the canopy and convective boundary layer into several layers. Photosynthesis, respiration, and exchange between each layer can be simulated by matrix equations. This simulation can be used to calculate recycling; defined here as the amount of respired CO2 re-fixed by photosynthesis relative to the total amount of respired CO2. At steady state the matrix equations can be solved for the canopy and convective boundary layer CO2 concentration and isotopic profile, which can be used to calculate a theoretical recycling index according to a previously developed equation. There is complete agreement between simulated and theoretical recycling indices for different exchange scenarios. Recycling indices from a simulation of gas exchange between a heterogeneous vegetation canopy and the troposphere also agreed with a more generalized form of the theoretical recycling equation developed here.

Variation in foliar respiration and wood CO2 efflux rates among species and canopy layers in a wet tropical forest.

PubMed

Asao, Shinichi; Bedoya-Arrieta, Ricardo; Ryan, Michael G

2015-02-01

As tropical forests respond to environmental change, autotrophic respiration may consume a greater proportion of carbon fixed in photosynthesis at the expense of growth, potentially turning the forests into a carbon source. Predicting such a response requires that we measure and place autotrophic respiration in a complete carbon budget, but extrapolating measurements of autotrophic respiration from chambers to ecosystem remains a challenge. High plant species diversity and complex canopy structure may cause respiration rates to vary and measurements that do not account for this complexity may introduce bias in extrapolation more detrimental than uncertainty. Using experimental plantations of four native tree species with two canopy layers, we examined whether species and canopy layers vary in foliar respiration and wood CO2 efflux and whether the variation relates to commonly used scalars of mass, nitrogen (N), photosynthetic capacity and wood size. Foliar respiration rate varied threefold between canopy layers, ∼0.74 μmol m(-2) s(-1) in the overstory and ∼0.25 μmol m(-2) s(-1) in the understory, but little among species. Leaf mass per area, N and photosynthetic capacity explained some of the variation, but height explained more. Chamber measurements of foliar respiration thus can be extrapolated to the canopy with rates and leaf area specific to each canopy layer or height class. If area-based rates are sampled across canopy layers, the area-based rate may be regressed against leaf mass per area to derive the slope (per mass rate) to extrapolate to the canopy using the total leaf mass. Wood CO2 efflux varied 1.0-1.6 μmol m(-2) s(-1) for overstory trees and 0.6-0.9 μmol m(-2) s(-1) for understory species. The variation in wood CO2 efflux rate was mostly related to wood size, and little to species, canopy layer or height. Mean wood CO2 efflux rate per surface area, derived by regressing CO2 efflux per mass against the ratio of surface area to mass, can be extrapolated to the stand using total wood surface area. The temperature response of foliar respiration was similar for three of the four species, and wood CO2 efflux was similar between wet and dry seasons. For these species and this forest, vertical sampling may yield more accurate estimates than would temporal sampling. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Unexpected High Diversity of Galling Insects in the Amazonian Upper Canopy: The Savanna Out There

PubMed Central

Julião, Genimar R.; Venticinque, Eduardo M.; Fernandes, G. Wilson; Price, Peter W.

2014-01-01

A relatively large number of studies reassert the strong relationship between galling insect diversity and extreme hydric and thermal status in some habitats, and an overall pattern of a greater number of galling species in the understory of scleromorphic vegetation. We compared galling insect diversity in the forest canopy and its relationship with tree richness among upland terra firme, várzea, and igapó floodplains in Amazonia, Brazil. The soils of these forest types have highly different hydric and nutritional status. Overall, we examined the upper layer of 1,091 tree crowns. Galling species richness and abundance were higher in terra firme forests compared to várzea and igapó forests. GLM-ANCOVA models revealed that the number of tree species sampled in each forest type was determinant in the gall-forming insect diversity. The ratio between galling insect richness and number of tree species sampled (GIR/TSS ratio) was higher in the terra firme forest and in seasonally flooded igapó, while the várzea presented the lowest GIR/TSS ratio. In this study, we recorded unprecedented values of galling species diversity and abundance per sampling point. The GIR/TSS ratio from várzea was approximately 2.5 times higher than the highest value of this ratio ever reported in the literature. Based on this fact, we ascertained that várzea and igapó floodplain forests (with lower GIA and GIR), together with the speciose terra firme galling community emerge as the gall diversity apex landscape among all biogeographic regions already investigated. Contrary to expectation, our results also support the “harsh environment hypothesis”, and unveil the Amazonian upper canopy as similar to Mediterranean vegetation habitats, hygrothermically stressed environments with leaf temperature at lethal limits and high levels of leaf sclerophylly. PMID:25551769

Numerical Study of the Response of an Atmospheric Surface Layer to a Spatially Nonuniform Plant Canopy

NASA Astrophysics Data System (ADS)

Qiu, J.; Gu, Z. L.; Wang, Z. S.

2008-05-01

High-accuracy large-eddy simulations of neutral atmospheric surface-layer flow over a gapped plant canopy strip have been performed. Subgrid-scale (SGS) motions are parameterized by the Sagaut mixed length SGS model, with a modification to compute the SGS characteristic length self-adaptively. Shaw’s plant canopy model, taking the vertical variation of leaf area density into account, is applied to study the response of the atmospheric surface layer to the gapped dense forest strip. Differences in the region far away from the gap and in the middle of the gap are investigated, according to the instantaneous velocity magnitude, the zero-plane displacement, the potential temperature and the streamlines. The large-scale vortex structure, in the form of a roll vortex, is revealed in the region far away from the gap. The nonuniform spatial distribution of plants appears to cause the formation of the coherent structure. The roll vortex starts in the wake of the canopy, and results in strong fluctuations throughout the entire canopy region. Wind sweeps and ejections in the plant canopy are also attributed to the large vortex structure.

White ash (Fraxinus americana L.) survival and growth in unmanaged upland forests

Treesearch

Jeffery S. Ward

1997-01-01

Crown class and diameter of 704 white ash (Fraxinus americana L.) > 0.5 inches dbh have been monitored at 10-yr intervals since 1927. Nominal stand age was 25 years in 1927. Although the density of white ash in the upper canopy declined from 14/acre to 3/acre between stand ages 25 through 85, the proportion of the upper canopy comprised by white...

Wind shear, sensible heat flux and atmospheric stability within a forest canopy

NASA Astrophysics Data System (ADS)

Piringer, M.; Polreich, E.

2009-09-01

The scientific project "ROSALIA”, carried out in co-operation between ZAMG and the Austrian Federal Research and Training Centre for Forests, Natural Hazards, and Landscape, investigated the meteorological impacts on pollen emission and spread in a typical Central European forest of mixed deciduous and coniferous trees. The study area is the "Lehrforst Rosalia” of BOKU University approx. 60 km south of the city of Vienna in undulating terrain (300 - 750 m altitude). In this area, two meteorological towers of similar construction, one at crest height, the other in the small valley of the river "Ofenbach” near a meteorological ground station, have been equipped with 3D ultrasonic anemometers: one has been placed on top of the upper tower to representatively measure the gradient flow; the tower in the valley has been equipped with 3 instruments, one at the lowermost platform near ground, the second in the middle of the forest canopy, the third on top of the tower situated within the transition zone between the canopy and the "free” boundary layer where the gradient winds dominate. The sonic anemometers measure the three-dimensional wind vector; in addition, the sound velocity is derived, from which the so-called "sonic temperature” is calculated to derive the sensible heat flux. Other quantities are the means, standard deviations, and covariances of the wind components and the momentum flux, the Monin-Obukhov stability parameter, and the friction velocity. In the sloping dense forest canopy surrounding the tower, complex meteorological conditions and frequent decoupling of above-canopy and within-canopy flow has to be expected. The presence of a thick leaf canopy results in a stronger decoupling between the flow above and inside the canopy. As the investigation period covers April and May 2009, this gives the opportunity to discern between leaf-off (at the beginning) and leaf-on periods, with a proposed increase in decoupling with time. The aim of the study is to derive characteristic patterns of wind and atmospheric stability within the forest canopy for leaf-off and leaf-on periods as well as for days of intense versus negligible pollen production.

Turbulent Structures in a Pine Forest with a Deep and Sparse Trunk Space: Stand and Edge Regions

NASA Astrophysics Data System (ADS)

Dupont, Sylvain; Irvine, Mark R.; Bonnefond, Jean-Marc; Lamaud, Eric; Brunet, Yves

2012-05-01

Forested landscapes often exhibit large spatial variability in vertical and horizontal foliage distributions. This variability may affect canopy-atmosphere exchanges through its action on the development of turbulent structures. Here we investigate in neutral stratification the turbulent structures encountered in a maritime pine forest characterized by a high, dense foliated layer associated with a deep and sparse trunk space. Both stand and edge regions are considered. In situ measurements and the results of large-eddy simulations are used and analyzed together. In stand conditions, far from the edge, canopy-top structures appear strongly damped by the dense crown layer. Turbulent wind fluctuations within the trunk space, where the momentum flux vanishes, are closely related to these canopy-top structures through pressure diffusion. Consequently, autocorrelation and spectral analyses are not quite appropriate to characterize the vertical scale of coherent structures in this type of canopy, as pressure diffusion enhances the actual scale of structures. At frequencies higher than those associated with canopy-top structures, wind fluctuations related to wake structures developing behind tree stems are observed within the trunk space. They manifest themselves in wind velocity spectra as secondary peaks in the inertial subrange region, confirming the hypothesis of spectral short-cuts in vegetation canopies. In the edge region specific turbulent structures develop just below the crown layer, in addition to canopy-top structures. They are generated by the wind shear induced by the sub-canopy wind jet that forms at the edge. These structures provide a momentum exchange mechanism similar to that observed at the canopy top but in the opposite direction and with a lower magnitude. They may develop as in plane mixing-layer flows, with some perturbations induced by canopy-top structures. Wake structures are also observed within the trunk space in the edge region.

Estimation of Nitrogen Vertical Distribution by Bi-Directional Canopy Reflectance in Winter Wheat

PubMed Central

Huang, Wenjiang; Yang, Qinying; Pu, Ruiliang; Yang, Shaoyuan

2014-01-01

Timely measurement of vertical foliage nitrogen distribution is critical for increasing crop yield and reducing environmental impact. In this study, a novel method with partial least square regression (PLSR) and vegetation indices was developed to determine optimal models for extracting vertical foliage nitrogen distribution of winter wheat by using bi-directional reflectance distribution function (BRDF) data. The BRDF data were collected from ground-based hyperspectral reflectance measurements recorded at the Xiaotangshan Precision Agriculture Experimental Base in 2003, 2004 and 2007. The view zenith angles (1) at nadir, 40° and 50°; (2) at nadir, 30° and 40°; and (3) at nadir, 20° and 30° were selected as optical view angles to estimate foliage nitrogen density (FND) at an upper, middle and bottom layer, respectively. For each layer, three optimal PLSR analysis models with FND as a dependent variable and two vegetation indices (nitrogen reflectance index (NRI), normalized pigment chlorophyll index (NPCI) or a combination of NRI and NPCI) at corresponding angles as explanatory variables were established. The experimental results from an independent model verification demonstrated that the PLSR analysis models with the combination of NRI and NPCI as the explanatory variables were the most accurate in estimating FND for each layer. The coefficients of determination (R2) of this model between upper layer-, middle layer- and bottom layer-derived and laboratory-measured foliage nitrogen density were 0.7335, 0.7336, 0.6746, respectively. PMID:25353983

Estimation of nitrogen vertical distribution by bi-directional canopy reflectance in winter wheat.

PubMed

Huang, Wenjiang; Yang, Qinying; Pu, Ruiliang; Yang, Shaoyuan

2014-10-28

Timely measurement of vertical foliage nitrogen distribution is critical for increasing crop yield and reducing environmental impact. In this study, a novel method with partial least square regression (PLSR) and vegetation indices was developed to determine optimal models for extracting vertical foliage nitrogen distribution of winter wheat by using bi-directional reflectance distribution function (BRDF) data. The BRDF data were collected from ground-based hyperspectral reflectance measurements recorded at the Xiaotangshan Precision Agriculture Experimental Base in 2003, 2004 and 2007. The view zenith angles (1) at nadir, 40° and 50°; (2) at nadir, 30° and 40°; and (3) at nadir, 20° and 30° were selected as optical view angles to estimate foliage nitrogen density (FND) at an upper, middle and bottom layer, respectively. For each layer, three optimal PLSR analysis models with FND as a dependent variable and two vegetation indices (nitrogen reflectance index (NRI), normalized pigment chlorophyll index (NPCI) or a combination of NRI and NPCI) at corresponding angles as explanatory variables were established. The experimental results from an independent model verification demonstrated that the PLSR analysis models with the combination of NRI and NPCI as the explanatory variables were the most accurate in estimating FND for each layer. The coefficients of determination (R2) of this model between upper layer-, middle layer- and bottom layer-derived and laboratory-measured foliage nitrogen density were 0.7335, 0.7336, 0.6746, respectively.

Forest service contributions to the national land cover database (NLCD): Tree Canopy Cover Production

Treesearch

Bonnie Ruefenacht; Robert Benton; Vicky Johnson; Tanushree Biswas; Craig Baker; Mark Finco; Kevin Megown; John Coulston; Ken Winterberger; Mark Riley

2015-01-01

A tree canopy cover (TCC) layer is one of three elements in the National Land Cover Database (NLCD) 2011 suite of nationwide geospatial data layers. In 2010, the USDA Forest Service (USFS) committed to creating the TCC layer as a member of the Multi-Resolution Land Cover (MRLC) consortium. A general methodology for creating the TCC layer was reported at the 2012 FIA...

Effect of solar radiation on severity of soybean rust.

PubMed

Young, Heather M; George, Sheeja; Narváez, Dario F; Srivastava, Pratibha; Schuerger, Andrew C; Wright, David L; Marois, James J

2012-08-01

Soybean rust (SBR), caused by Phakopsora pachyrhizi, is a damaging fungal disease of soybean (Glycine max). Although solar radiation can reduce SBR urediniospore survival, limited information is available on how solar radiation affects SBR progress within soybean canopies. Such information can aid in developing accurate SBR prediction models. To manipulate light penetration into soybean canopies, structures of shade cloth attenuating 30, 40, and 60% sunlight were constructed over soybean plots. In each plot, weekly evaluations of severity in lower, middle, and upper canopies, and daily temperature and relative humidity were recorded. Final plant height and leaf area index were also recorded for each plot. The correlation between amount of epicuticular wax and susceptibility of leaves in the lower, middle, and upper canopies was assessed with a detached leaf assay. Final disease severity was 46 to 150% greater in the lower canopy of all plots and in the middle canopy of 40 and 60% shaded plots. While daytime temperature within the canopy of nonshaded soybean was greater than shaded soybean by 2 to 3°C, temperatures recorded throughout typical evenings and mornings of the growing season in all treatments were within the range (10 to 28.5°C) for SBR development as was relative humidity. This indicates temperature and relative humidity were not limiting factors in this experiment. Epicuticular wax and disease severity in detached leaf assays from the upper canopy had significant negative correlation (P = 0.009, R = -0.84) regardless of shade treatment. In laboratory experiments, increasing simulated total solar radiation (UVA, UVB, and PAR) from 0.15 to 11.66 MJ m(-2) increased mortality of urediniospores from 2 to 91%. Variability in disease development across canopy heights in early planted soybean may be attributed to the effects of solar radiation not only on urediniospore viability, but also on plant height, leaf area index, and epicuticular wax, which influence disease development of SBR. These results provide an understanding of the effect solar radiation has on the progression of SBR within the soybean canopy.

Sunscreening fungal pigments influence the vertical gradient of pendulous lichens in boreal forest canopies.

PubMed

Färber, Leonie; Sølhaug, Knut Asbjorn; Esseen, Per-Anders; Bilger, Wolfgang; Gauslaa, Yngvar

2014-06-01

Pendulous lichens dominate canopies of boreal forests, with dark Bryoria species in the upper canopy vs. light Alectoria and Usnea species in lower canopy. These genera offer important ecosystem services such as winter forage for reindeer and caribou. The mechanism behind this niche separation is poorly understood. We tested the hypothesis that species-specific sunscreening fungal pigments protect underlying symbiotic algae differently against high light, and thus shape the vertical canopy gradient of epiphytes. Three pale species with the reflecting pigment usnic acid (Alectoria sarmentosa, Usnea dasypoga, U. longissima) and three with dark, absorbing melanins (Bryoria capillaris, B. fremontii, B. fuscescens) were compared. We subjected the lichens to desiccation stress with and without light, and assessed their performance with chlorophyll fluorescence. Desiccation alone only affected U. longissima. By contrast, light in combination with desiccation caused photoinhibitory damage in all species. Usnic lichens were significantly more susceptible to light during desiccation than melanic ones. Thus, melanin is a more efficient light-screening pigment than usnic acid. Thereby, the vertical gradient of pendulous lichens in forest canopies is consistent with a shift in type and functioning of sunscreening pigments, from high-light-tolerant Bryoria in the upper to susceptible Alectoria and Usnea in the lower canopy.

Influence of crown class, diameter, and sprout rank on red maple (Acer rubrum L.) development during forest succession in Connecticut

Treesearch

Jeffery S. Ward; George R. Stephens

1993-01-01

Crown class, stem diameter, and sprout rank of 2067 red maples on medium quality sites were measured at 10-yr intervals between 1927-1987. Nominal stand age was 25 yrs in 1927. There was a progressive increase in the probability of an individual red maple ascending into the upper canopy and persisting in the upper canopy from suppressed through dominant crown classes...

Simulation of Surface Energy Fluxes and Snow Interception Using a Higher Order Closure Multi-Layer Soil-Vegetation-Atmospheric Model: The Effect of Canopy Shape and Structure

NASA Astrophysics Data System (ADS)

McGowan, L. E.; Dahlke, H. E.; Paw U, K. T.

2015-12-01

Snow cover is a critical driver of the Earth's surface energy budget, climate change, and water resources. Variations in snow cover not only affect the energy budget of the land surface but also represent a major water supply source. In California, US estimates of snow depth, extent, and melt in the Sierra Nevada are critical to estimating the amount of water available for both California agriculture and urban users. However, accurate estimates of snow cover and snow melt processes in forested area still remain a challenge. Canopy structure influences the vertical and spatiotemporal distribution of snow, and therefore ultimately determines the degree and extent by which snow alters both the surface energy balance and water availability in forested regions. In this study we use the Advanced Canopy-Atmosphere-Soil algorithm (ACASA), a multi-layer soil-vegetation-atmosphere numerical model, to simulate the effect of different snow-covered canopy structures on the energy budget, and temperature and other scalar profiles within different forest types in the Sierra Nevada, California. ACASA incorporates a higher order turbulence closure scheme which allows the detailed simulation of turbulent fluxes of heat and water vapor as well as the CO2 exchange of several layers within the canopy. As such ACASA can capture the counter gradient fluxes within canopies that may occur frequently, but are typically unaccounted for, in most snow hydrology models. Six different canopy types were modeled ranging from coniferous forests (e.g. most biomass near the ground) to top-heavy (e.g. most biomass near the top of the crown) deciduous forests to multi-layered forest canopies (e.g. mixture of young and mature trees). Preliminary results indicate that the canopy shape and structure associated with different canopy types fundamentally influence the vertical scalar profiles (including those of temperature, moisture, and wind speed) in the canopy and thus alter the interception and snow melt dynamics in forested land surfaces. The turbulent transport dynamics, including counter-gradient fluxes, and radiation features including land surface albedo, are discussed in the context of the snow energy balance.

Canopy gap size influences niche partitioning of the ground-layer plant community in a northern temperate forest

Treesearch

Christel C. Kern; Rebecca A. Montgomery; Peter B. Reich; Terry F. Strong

2013-01-01

The Gap Partitioning Hypothesis (GPH) posits that gaps create heterogeneity in resources crucial for tree regeneration in closed-canopy forests, allowing trees with contrasting strategies to coexist along resource gradients. Few studies have examined gap partitioning of temperate, ground-layer vascular plants. We used a ground-layer plant community of a temperate...

Impacts of differing aerodynamic resistance formulae on modeled energy exchange at the above-canopy/within-canopy/soil interface

USDA-ARS?s Scientific Manuscript database

Application of the Two-Source Energy Balance (TSEB) Model using land surface temperature (LST) requires aerodynamic resistance parameterizations for the flux exchange above the canopy layer, within the canopy air space and at the soil/substrate surface. There are a number of aerodynamic resistance f...

Turbulent Intensities and Velocity Spectra for Bare and Forested Gentle Hills: Flume Experiments

NASA Astrophysics Data System (ADS)

Poggi, Davide; Katul, Gabriel G.

2008-10-01

To investigate how velocity variances and spectra are modified by the simultaneous action of topography and canopy, two flume experiments were carried out on a train of gentle cosine hills differing in surface cover. The first experiment was conducted above a bare surface while the second experiment was conducted within and above a densely arrayed rod canopy. The velocity variances and spectra from these two experiments were compared in the middle, inner, and near-surface layers. In the middle layer, and for the canopy surface, longitudinal and vertical velocity variances ({σ_u^2,σ_w^2}) were in phase with the hill-induced spatial mean velocity perturbation (Δ u) around the so-called background state (taken here as the longitudinal mean at a given height) as predicted by rapid distortion theory (RDT). However, for the bare surface case, {σ_u^2 } and {σ_w^2 } remained out of phase with Δ u by about L/2, where L is the hill half-length. In the canopy layer, wake production was a significant source of turbulent energy for {σ_w^2 } , and its action was to re-align velocity variances with Δ u in those layers, a mechanism completely absent for the bare surface case. Such a lower ‘boundary condition’ resulted in longitudinal variations of {σ_w^2} to be nearly in phase with Δ u above the canopy surface. In the inner and middle layers, the spectral distortions by the hill remained significant for the background state of the bare surface case but not for the canopy surface case. In particular, in the inner and middle layers of the bare surface case, the effective exponents derived from the locally measured power spectra diverged from their expected - 5/3 value for inertial subrange scales. These departures spatially correlated with the hill surface. However, for the canopy surface case, the spectral exponents were near - 5/3 above the canopy though the minor differences from - 5/3 were also correlated with the hill surface. Inside the canopy, wake production and energy short-circuiting resulted in significant departures from - 5/3. These departures from - 5/3 also appeared correlated with the hill surface through the wake production contribution and its alignment with Δ u. Moreover, scales commensurate with Von Karman street vorticies well described wake production scales inside the canopy, confirming the important role of the mean flow in producing wakes. The spectra inside the canopy on the lee side of the hill, where a negative mean flow delineated a recirculation zone, suggested that the wake production scales there were ‘broader’ when compared to their counterpart outside the recirculation zone. Inside the recirculation zone, there was significantly more energy at higher frequencies when compared to regions outside the recirculation zone.

Photosynthesis and canopy characteristics in genetically defined families of silver birch (Betula pendula).

PubMed

Wang, T; Tigerstedt, P M; Viherä-Aarnio, A

1995-10-01

Net photosynthetic rates (A) of leaves in upper and lower crown layers (A(upper) and A(lower)), leaf area index (LAI), mean tilt angle (MTA), several leaf characteristics, and volume growth were observed in fast- and slow-growing families of a 14-year-old full-sib and half-sib family progeny test of Betula pendula Roth. Each measure of net photosynthetic rate was calculated after correcting measured net photosynthesis for the effects of environmental variables. The differences in A(upper) and LAI among families were significant. The proportions of the total variance assigned to family for A(upper), A(lower) and LAI were 33.64, 28.93 and 54.99%, respectively. The mean A(upper) and LAI of the fast-growing families were significantly higher than those of the slow-growing families, whereas the mean A(lower) of the fast-growing families was significantly lower than that of the slow-growing families. There were also significant differences among families in leaf size, leaf shape, and the ratios leaf fresh weight/area and leaf dry weight/area. Between 27.55 and 54.55% of the total variance in these characteristics could be assigned to the family effect. Volume growth was positively correlated with A(upper) and LAI, but it was most strongly correlated with A(upper) x LAI.

Understory and small trees contribute importantly to stemflow of a lower montane cloud forest

NASA Astrophysics Data System (ADS)

González Martínez, T. M.; Wiliams-Linera, G.; Holwerda, F.

2016-12-01

Stemflow (Sf) measurements in rainforests and montane forests dominated by large trees rarely include the understory and small trees. In the present study, contributions of woody understory (> 1 m height and < 5 cm DBH), small trees (5 < DBH < 10 cm) and upper canopy trees (> 10 cm DBH) to overall Sf of a lower montane cloud forest in central Veracruz, Mexico, were quantified. Incident precipitation (P), Sf volume and vegetation structure were measured. Subsequently, stemflow funneling ratios (SFR) were calculated, and allometric relationships between tree basal area and Sf volume were used to scale up measurements from individual trees to the stand level. Additionally, two other common methods to calculate areal Sf were used for comparative purposes. Understory woody plants, small trees and upper canopy trees represented 96, 2 and 2 %, respectively, of the total density. Upper canopy trees had the lowest SFRs (1.6 ± 0.5 on average), while the lower understory (> 1 m and < 2 m height) had the highest (36.1 ± 6.4). Small trees and upper understory (> 2 m) presented similar SFRs (22.9 ± 5.4 and 20.2 ± 3.9, respectively). Different scaling methods yielded very similar results for all but the upper understory. Overall areal Sf during the study period was 19 mm (3.8 % of rainfall), to which the understory contributed 66.3 % (12.6 mm), small trees 12.6 % (2.4 mm) and upper canopy trees 21.1 % (4.0 mm). Our results suggest that woody understory vegetation and small trees can have an important role in Sf generation of tall humid tropical forests, provided that the density of plants in these groups is high enough.

Population dynamics and within-plant distribution of the mite Calacarus flagelliseta (Acari: Eriophyidae) on papaya in Hawaii.

PubMed

Fournier, Valerie; Rosenheim, Jay A; Brodeur, Jacques; Johnson, Marshall W

2004-10-01

An important element in developing a management strategy for a new pest is the study of its seasonal dynamics and within-plant distribution. Here, we studied the mite Calacarus flagelliseta Fletchmann, De Moraes & Barbosa on papaya, Papaya carica L. (Caricaceae), in Hawaii to quantify 1) patterns of seasonal abundance, 2) its distribution across different vertical strata of the papaya canopy, and 3) shifts in its use of the upper versus the lower surfaces of papaya leaves. Nondestructive sampling conducted in two papaya plantings revealed that 1) populations of C. flagelliseta peak during the summer; 2) mites are most abundant in the middle and lower strata of the plant canopy, and least abundant on the youngest leaves found in the upper canopy; and 3) mites are found more predominantly on the upper leaf surfaces when overall population density peaks, suggesting that individuals move from the lower to the upper leaf surfaces when food resources on the lower leaf surface have been exploited by conspecifics. These results have significant implications for the development of sampling plans for C. flagelliseta in papaya.

Within and Between Canopy Variabilit of Foliar Nitrogen Concentration for Loblolly and Slash Pine Stands Planted at Different Densities

Treesearch

Rodney E. Will; Greg Barron-Gafford; Robert O. Teskey; Barry D. Shiver

2004-01-01

Mid-summer foliar nitrogen concentrations (N) were measured at three canopy positions (upper, middle, lower), two foliage ages per canopy position (current-year and 1-year-old), and two flushes per age class (first flush and second flush) in 4-year-old loblolly (Pinus taeda L.) and slash pine (Pinus elliottii Engelm.) stands...

The plume also rises: trajectories of pheromone plumes issuing from point sources in an orchard canopy at night.

PubMed

Girling, Robbie D; Higbee, Bradley S; Cardé, Ring T

2013-09-01

The trajectories of pheromone plumes in canopied habitats, such as orchards, have been little studied. We documented the capture of male navel orangeworm moths, Amyelois transitella, in female-baited traps positioned at 5 levels, from ground level to the canopy top, at approximately 6 m above ground, in almond orchards. Males were captured in similar proportions at all levels, suggesting that they do not favor a particular height during ranging flight. A 3-D sonic anemometer was used to establish patterns of wind flow and temperature at 6 heights from 2.08 to 6.65 m in an almond orchard with a 5 m high canopy, every 3 h over 72 h. The horizontal velocity of wind flow was highest above the canopy, where its directionality also was the most consistent. During the time of A. transitella mating (0300-0600), there was a net vertical displacement upward. Vertical buoyancy combined with only minor reductions in the distance that plumes will travel in the lower compared to the upper canopy suggest that the optimal height for release of pheromone from high-release rate sources, such as aerosol dispensers (“puffers”), that are deployed at low densities (e.g., 3 per ha.) would be at mid or low in the canopy, thereby facilitating dispersion of disruptant throughout the canopy. Optimal placement of aerosol dispensers will vary with the behavioral ecology of the target pest; however, our results suggest that current protocols, which generally propose dispenser placement in the upper third of the canopy, should be reevaluated.

Canopy structure on forest lands in western Oregon: differences among forest types and stand ages

Treesearch

Anne C.S. McIntosh; Andrew N. Gray; Steven L. Garman

2009-01-01

Canopy structure is an important attribute affecting economic and ecological values of forests in the Pacific Northwest. However, canopy cover and vertical layering are rarely measured directly; they are usually inferred from other forest measurements. In this study, we quantified and compared vertical and horizontal patterns of tree canopy structure and understory...

NLCD tree canopy cover (TCC) maps of the contiguous United States and coastal Alaska

Treesearch

Robert Benton; Bonnie Ruefenacht; Vicky Johnson; Tanushree Biswas; Craig Baker; Mark Finco; Kevin Megown; John Coulston; Ken Winterberger; Mark Riley

2015-01-01

A tree canopy cover (TCC) map is one of three elements in the National Land Cover Database (NLCD) 2011 suite of nationwide geospatial data layers. In 2010, the USDA Forest Service (USFS) committed to creating the TCC layer as a member of the Multi-Resolution Land Cover (MRLC) consortium. A general methodology for creating the TCC layer was reported at the 2012 FIA...

On the performance of surface renewal analysis to estimate sensible heat flux over two growing rice fields under the influence of regional advection

NASA Astrophysics Data System (ADS)

Castellví, F.; Snyder, R. L.

2009-09-01

SummaryHigh-frequency temperature data were recorded at one height and they were used in Surface Renewal (SR) analysis to estimate sensible heat flux during the full growing season of two rice fields located north-northeast of Colusa, CA (in the Sacramento Valley). One of the fields was seeded into a flooded paddy and the other was drill seeded before flooding. To minimize fetch requirements, the measurement height was selected to be close to the maximum expected canopy height. The roughness sub-layer depth was estimated to discriminate if the temperature data came from the inertial or roughness sub-layer. The equation to estimate the roughness sub-layer depth was derived by combining simple mixing-length theory, mixing-layer analogy, equations to account for stable atmospheric surface layer conditions, and semi-empirical canopy-architecture relationships. The potential for SR analysis as a method that operates in the full surface boundary layer was tested using data collected over growing vegetation at a site influenced by regional advection of sensible heat flux. The inputs used to estimate the sensible heat fluxes included air temperature sampled at 10 Hz, the mean and variance of the horizontal wind speed, the canopy height, and the plant area index for a given intermediate height of the canopy. Regardless of the stability conditions and measurement height above the canopy, sensible heat flux estimates using SR analysis gave results that were similar to those measured with the eddy covariance method. Under unstable cases, it was shown that the performance was sensitive to estimation of the roughness sub-layer depth. However, an expression was provided to select the crucial scale required for its estimation.

Effect of canopy and topography induced wakes on land-atmosphere fluxes of momentum and scalars

NASA Astrophysics Data System (ADS)

Markfort, C. D.; Zhang, W.; Porté-Agel, F.; Stefan, H. G.

2012-04-01

Wakes shed from natural and anthropogenic landscape features affect land-atmosphere fluxes of momentum and scalars, including water vapor and trace gases (e.g. CO2). Canopies and bluff bodies, such as forests, buildings and topography, cause boundary layer flow separation, and lead to a break down of standard Monin-Obukhov similarity relationships in the atmospheric boundary layer (ABL). Wakes generated by these land surface features persist for significant distances (>100 typical length scales) and affect a large fraction of the Earth's terrestrial surface. This effect is currently not accounted for in land-atmosphere models, and little is known about how heterogeneity of wake-generating features affect land surface fluxes. Additionally flux measurements, made in wake-affected regions, do not satisfy the homogeneous flow requirements for the standard eddy correlation (EC) method. This phenomenon, often referred to as wind sheltering, has been shown to affect momentum and kinetic energy fluxes at the lake-atmosphere interface (Markfort et al. 2010). This presentation will highlight results from controlled wind tunnel experiments of neutral and thermally stratified boundary layers, using particle image velocimetry (PIV) and custom x-wire/cold-wire anemometry, to understand how the physical structure of upstream bluff bodies and porous canopies as well as how thermal stability affect the flow separation zone, boundary layer recovery and surface fluxes. We have found that there is a nonlinear relationship between canopy length/porosity and flow separation downwind of a canopy to clearing transition. Results will provide the basis for new parameterizations to account for wake effects on land-atmosphere fluxes and corrections for the EC measurements over open fields, lakes, and wetlands. Key words: Atmospheric boundary layer; Wakes; Stratification; Land-Atmosphere Parameterization; Canopy

Vertical stratification of forest canopy for segmentation of understory trees within small-footprint airborne LiDAR point clouds

NASA Astrophysics Data System (ADS)

Hamraz, Hamid; Contreras, Marco A.; Zhang, Jun

2017-08-01

Airborne LiDAR point cloud representing a forest contains 3D data, from which vertical stand structure even of understory layers can be derived. This paper presents a tree segmentation approach for multi-story stands that stratifies the point cloud to canopy layers and segments individual tree crowns within each layer using a digital surface model based tree segmentation method. The novelty of the approach is the stratification procedure that separates the point cloud to an overstory and multiple understory tree canopy layers by analyzing vertical distributions of LiDAR points within overlapping locales. The procedure does not make a priori assumptions about the shape and size of the tree crowns and can, independent of the tree segmentation method, be utilized to vertically stratify tree crowns of forest canopies. We applied the proposed approach to the University of Kentucky Robinson Forest - a natural deciduous forest with complex and highly variable terrain and vegetation structure. The segmentation results showed that using the stratification procedure strongly improved detecting understory trees (from 46% to 68%) at the cost of introducing a fair number of over-segmented understory trees (increased from 1% to 16%), while barely affecting the overall segmentation quality of overstory trees. Results of vertical stratification of the canopy showed that the point density of understory canopy layers were suboptimal for performing a reasonable tree segmentation, suggesting that acquiring denser LiDAR point clouds would allow more improvements in segmenting understory trees. As shown by inspecting correlations of the results with forest structure, the segmentation approach is applicable to a variety of forest types.

Improving energy partitioning and the nighttime energy balance by implementation of a multi-layer energy budget in ORCHIDEE-CAN

NASA Astrophysics Data System (ADS)

Chen, Yiying; Ryder, James; Naudts, Kim; McGrath, Matthew J.; Otto, Juliane; Bastriko, Vladislav; Valade, Aude; Launiainen, Samuli; Ogée, Jérôme; Elbers, Jan A.; Foken, Thomas; Tiedemann, Frank; Heinesch, Bernard; Black, Andrew; Haverd, Vanessa; Loustau, Denis; Ottlé, Catherine; Peylin, Philippe; Polcher, Jan; Luyssaert, Sebastiaan

2015-04-01

Canopy structure is one of the most important vegetation characteristics for land-atmosphere interactions as it determines the energy and scalar exchanges between land surface and overlay air mass. In this study we evaluated the performance of a newly developed multi-layer energy budget (Ryder et al., 2014) in a land surface model, ORCHIDEE-CAN (Naudts et al., 2014), which simulates canopy structure and can be coupled to an atmospheric model using an implicit procedure. Furthermore, a vertical discrete drag parametrization scheme was also incorporated into this model, in order to obtain a better description of the sub-canopy wind profile simulation. Site level datasets, including the top-of-the-canopy and sub-canopy observations made available from eight flux observation sites, were collected in order to conduct this evaluation. The geo-location of the collected observation sites crossed climate zones from temperate to boreal and the vegetation types included deciduous, evergreen broad leaved and evergreen needle leaved forest with maximum LAI ranging from 2.1 to 7.0. First, we used long-term top-of-the-canopy measurements to analyze the performance of the current one-layer energy budget in ORCHIDEE-CAN. Three major processes were identified for improvement through the implementation of a multi-layer energy budget: 1) night time radiation balance, 2) energy partitioning during winter and 3) prediction of the ground heat flux. Short-term sub-canopy observations were used to calibrate the parameters in sub-canopy radiation, turbulence and resistances modules with an automatic tuning process following the maximum gradient of the user-defined objective function. The multi-layer model is able to capture the dynamic of sub-canopy turbulence, temperature and energy fluxes with imposed LAI profile and optimized parameter set at a site level calibration. The simulation result shows the improvement both on the nighttime energy balance and energy partitioning during winter and presents a better Taylor skill score, compared to the result from single layer simulation. The importance of using the multi-layer energy budget in a land surface model for coupling to the atmospheric model will also be discussed in this presentation. Reference: Ryder, J., J. Polcher, P. Peylin, C. Ottlé, Y. Chen, E. Van Gorsel, V. Haverd, M. J. McGrath, K.Naudts, J. Otto, A. Valade, and S. Luyssaert, 2014. "A multi-layer land surface energy budget model for implicit coupling with global atmospheric simulations", Geosci. Model Dev. Discuss. 7, 8649-8701 Naudts, K. J. Ryder, M. J. McGrath, J. Otto, Y. Chen, A. Valade, V. Bellasen, G. Berhongaray, G. Bönisch, M. Campioli, J. Ghattas, T. De Groote, V. Haverd, J. Kattge, N. MacBean, F. Maignan, P. Merilä, J. Penuelas, P. Peylin, B. Pinty, H. Pretzsch, E. D. Schulze, D. Solyga, N. Vuichard, Y. Yan, and S. Luyssaert, 2014. "A vertically discretised canopy description for ORCHIDEE (SVN r2290) and the modifications to the energy, water and carbon fluxes", Geosci. Model Dev. Discuss. 7, 8565-8647

Response of rocky invertebrate diversity, structure and function to the vertical layering of vegetation

NASA Astrophysics Data System (ADS)

Bustamante, María; Tajadura, Javier; Gorostiaga, José María; Saiz-Salinas, José Ignacio

2014-06-01

Macroalgae comprise a prominent part of the rocky benthos where many invertebrates develop, and are believed to be undergoing severe declines worldwide. In order to investigate how the vegetation structure (crustose, basal and canopy layers) contributes to the diversity, structure and function of benthic invertebrates, a total of 31 subtidal transects were sampled along the northeast Atlantic coast of Spain. Significant positive relationships were found between the canopy layer and faunal abundance, taxonomic diversity and functional group diversity. Canopy forming algae were also related to epiphytic invertebrates, medium size forms, colonial strategy and suspensivores. By contrast, basal algae showed negative relationships with all variables tested except for detritivores. Multivariate multiple regression analyses (DISTLM) point to crustose as well as canopy layers as the best link between seaweeds and invertebrate assemblage structure. A close relationship was found between taxonomic and functional diversities. In general, low levels of taxonomic redundancy were detected for functional groups correlated with vegetation structure. A conceptual model based on the results is proposed, describing distinct stages of invertebrate assemblages in relation to the vertical structure of vegetation.

Identification of canopy strata in Allegheny hardwood stands

Treesearch

David W. McGill; Stephen B. Jones; Christopher A. Nowak

1995-01-01

Allegheny hardwood stands typically develop vertical canopy layers, or strata, due to differential species-specific growth rates and tolerance to shade. Across the Allegheny Plateau, black cherry dominates the main canopy, while sugar maple, American beech, and red maple are relegated to subcanopy strata.

Oil road effects on the anuran community of a high canopy tank bromeliad (Aechmea zebrina) in the upper Amazon basin, Ecuador.

PubMed

McCracken, Shawn F; Forstner, Michael R J

2014-01-01

Tropical forest canopies are among the most species-rich terrestrial habitats on earth and one of the remaining relatively unexplored biotic frontiers. Epiphytic bromeliads provide microhabitat for a high diversity of organisms in tropical forest canopies and are considered a keystone resource. A number of amphibians inhabit these phytotelmata, yet their ecological role and status in forest canopies remains unknown. For this study, anurans were collected from an upper canopy tank bromeliad (Aechmea zebrina) at ∼20-45 m (x¯ = 33 m) above the forest floor. Bromeliads were sampled from trees located near trails in undisturbed primary rainforest and oil access roads in the Yasuní Biosphere Reserve of Amazonian Ecuador. We collected 95 anurans representing 10 species from 160 bromeliads in 32 trees. We used generalized linear mixed models to assess the effects of disturbance and habitat factors on the occupancy and abundance of anurans collected. Bromeliads in forest along oil roads had a lower occupancy and abundance of anurans than those in undisturbed forest, a somewhat unexpected result due to the intactness and quality of forest adjacent to the roads. Recorded habitat variables had no relationship with occupancy or abundance of anurans, and did not differ significantly between treatments. Our findings reveal that even the minimal footprint of natural resource extraction operations, primarily roads, in rainforest environments can have significant negative impacts on the unique upper canopy anuran community. Based on these results, we recommend that natural resource development treat rainforest habitat as an offshore system where roads are not used, employ industry best practice guidelines, and current access roads be protected from colonization and further deforestation.

Oil Road Effects on the Anuran Community of a High Canopy Tank Bromeliad (Aechmea zebrina) in the Upper Amazon Basin, Ecuador

PubMed Central

McCracken, Shawn F.; Forstner, Michael R. J.

2014-01-01

Tropical forest canopies are among the most species-rich terrestrial habitats on earth and one of the remaining relatively unexplored biotic frontiers. Epiphytic bromeliads provide microhabitat for a high diversity of organisms in tropical forest canopies and are considered a keystone resource. A number of amphibians inhabit these phytotelmata, yet their ecological role and status in forest canopies remains unknown. For this study, anurans were collected from an upper canopy tank bromeliad (Aechmea zebrina) at ∼20–45 m (x¯ = 33 m) above the forest floor. Bromeliads were sampled from trees located near trails in undisturbed primary rainforest and oil access roads in the Yasuní Biosphere Reserve of Amazonian Ecuador. We collected 95 anurans representing 10 species from 160 bromeliads in 32 trees. We used generalized linear mixed models to assess the effects of disturbance and habitat factors on the occupancy and abundance of anurans collected. Bromeliads in forest along oil roads had a lower occupancy and abundance of anurans than those in undisturbed forest, a somewhat unexpected result due to the intactness and quality of forest adjacent to the roads. Recorded habitat variables had no relationship with occupancy or abundance of anurans, and did not differ significantly between treatments. Our findings reveal that even the minimal footprint of natural resource extraction operations, primarily roads, in rainforest environments can have significant negative impacts on the unique upper canopy anuran community. Based on these results, we recommend that natural resource development treat rainforest habitat as an offshore system where roads are not used, employ industry best practice guidelines, and current access roads be protected from colonization and further deforestation. PMID:24416414

Coupled atmosphere/canopy model for remote sensing of plant reflectance features

NASA Technical Reports Server (NTRS)

Gerstl, S. A.; Zardecki, A.

1985-01-01

Solar radiative transfer through a coupled system of atmosphere and plant canopy is modeled as a multiple-scattering problem through a layered medium of random scatterers. The radiative transfer equation is solved by the discrete-ordinates finite-element method. Analytic expressions are derived that allow the calculation of scattering and absorption cross sections for any plant canopy layer form measurable biophysical parameters such as the leaf area index, leaf angle distribution, and individual leaf reflectance and transmittance data. An expression for a canopy scattering phase function is also given. Computational results are in good agreement with spectral reflectance measurements directly above a soybean canopy, and the concept of greenness- and brightness-transforms of Landsat MSS data is reconfirmed with the computed results. A sensitivity analysis with the coupled atmosphere/canopy model quantifies how satellite-sensed spectral radiances are affected by increased atmospheric aerosols, by varying leaf area index, by anisotropic leaf scattering, and by non-Lambertian soil boundary conditions. Possible extensions to a 2-D model are also discussed.

Flow over Canopies with Complex Morphologies

NASA Astrophysics Data System (ADS)

Rubol, S.; Ling, B.; Battiato, I.

2017-12-01

Quantifying and predicting how submerged vegetation affects the velocity profile of riverine systems is crucial in ecohydraulics to properly assess the water quality and ecological functions or rivers. The state of the art includes a plethora of models to study the flow and transport over submerged canopies. However, most of them are validated against data collected in flume experiments with rigid cylinders. With the objective of investigating the capability of a simple analytical solution for vegetated flow to reproduce and predict the velocity profile of complex shaped flexible canopies, we use the flow model proposed by Battiato and Rubol [WRR 2013] as the analytical approximation of the mean velocity profile above and within the canopy layer. This model has the advantages (i) to threat the canopy layer as a porous medium, whose geometrical properties are associated with macroscopic effective permeability and (ii) to use input parameters that can be estimated by remote sensing techniques, such us the heights of the water level and the canopy. The analytical expressions for the average velocity profile and the discharge are tested against data collected across a wide range of canopy morphologies commonly encountered in riverine systems, such as grasses, woody vegetation and bushes. Results indicate good agreement between the analytical expressions and the data for both simple and complex plant geometry shapes. The rescaled low submergence velocities in the canopy layer followed the same scaling found in arrays of rigid cylinders. In addition, for the dataset analyzed, the Darcy friction factor scaled with the inverse of the bulk Reynolds number multiplied by the ratio of the fluid to turbulent viscosity.

[Effects of canopy density on the functional group of soil macro fauna in Pinus massoniana plantations].

PubMed

Zhou, Hong Yang; Zhang, Dan Ju; Zhang, Jie; Zhao, Yan Bo; Zhao, Bo; Wei, Da Ping; Zhang, Jian

2017-06-18

In order to understand the effects of canopy density on the functional group characteristics of soil macrofauna in Pinus massoniana plantations, we divided the captured soil fauna into five types including xylophages, predators, saprophages, omnivores and fungal feeders. The results showed that 1) Saprozoic feeders had the highest percentage of total individuals, and the omnivores and xylophages occupied higher percentages of total taxa. 2) The individual and group number of the predators, and the group number of xylophages did not change significantly under 0.5-0.6 and then decreased significantly under 0.6-0.9 canopy density. 3) With the increasing canopy density, the individual an dgroup number of predators in litter layer decreased significantly, the saprozoic individual number in 5-10 cm soil layer represented irregular trends. The individual number of xylophage increased with the depth of soil, and the group number in litter layer, the individual and group number in 5-10 cm soil layer decreased significantly. 4) Pielou evenness of xylophage had no significant changes with the canopy density, all the other diversity index of xylophage and saprophage were various with the increasing canopy density. The predatory Simpson index was stable under 0.5-0.8, and then decreased significantly under 0.8-0.9 canopy density. 5) The CCA (canonical correlation analysis) indicated that soil bulk density and moisture content were the main environmental factors affecting functional groups of soil macro fauna. Moisture content greatly impacted on the number of saprophagous individuals. But xylophage and predators were mostly affected by soil bulk density, and the predatory Simpson index was mainly affected by soil pH value and total phosphorus. Our research indicated that the structure of soil macro faunal functional group under 0.7 canopy density was comparatively stable, which would facilitate the maintenance of soil fertility and ecological function in Pinus massoniana plantation.

The influence of elevated CO2 on non-structural carbohydrate distribution and fructan accumulation in wheat canopies

NASA Technical Reports Server (NTRS)

Smart, D. R.; Chatterton, N. J.; Bugbee, B.

1994-01-01

We grew 2.4 m2 wheat canopies in a large growth chamber under high photosynthetic photon flux (1000 micromoles m-2 s-1) and using two CO2 concentrations, 360 and 1200 micromoles mol-1. Photosynthetically active radiation (400-700 nm) was attenuated slightly faster through canopies grown in 360 micromoles mol-1 than through canopies grown in 1200 micromoles mol-1, even though high-CO2 canopies attained larger leaf area indices. Tissue fractions were sampled from each 5-cm layer of the canopies. Leaf tissue sampled from the tops of canopies grown in 1200 micromoles mol-1 accumulated significantly more total non-structural carbohydrate, starch, fructan, sucrose, and glucose (p < 0.05) than for canopies grown in 360 micromoles mol-1. Non-structural carbohydrate did not significantly increase in the lower canopy layers of the elevated CO2 treatment. Elevated CO2 induced fructan synthesis in all leaf tissue fractions, but fructan formation was greatest in the uppermost leaf area. A moderate temperature reduction of 10 degrees C over 5 d increased starch, fructan and glucose levels in canopies grown in 1200 micromoles mol-1, but concentrations of sucrose and fructose decreased slightly or remained unchanged. Those results may correspond with the use of fructosyl-residues and release of glucose when sucrose is consumed in fructan synthesis.

Mean and turbulent flow downstream of a low-intensity fire: influence of canopy and background atmospheric conditions

Treesearch

Michael T. Kiefer; Warren E. Heilman; Shiyuan Zhong; Joseph J. Charney; Xindi Bian

2015-01-01

This study examines the sensitivity of mean and turbulent flow in the planetary boundary layer and roughness sublayer to a low-intensity fire and evaluates whether the sensitivity is dependent on canopy and background atmospheric properties. The ARPS-CANOPY model, a modified version of the Advanced Regional Prediction System (ARPS) model with a canopy parameterization...

Experimental evaluation of the significance of the pressure transport term for the Turbulence Kinetic Energy Budget across contrasting forest architectures

NASA Astrophysics Data System (ADS)

Ehrnsperger, Laura; Wunder, Tobias; Thomas, Christoph

2017-04-01

Forests are one of the dominant vegetation types on Earth and are an important sink for carbon on our planet. Forests are special ecosystems due to their great canopy height und complex architecture consisting of a subcanopy and a canopy layer, which changes the mechanisms of turbulent exchange within the plant canopy. To date, the sinks and sources of turbulence in forest canopies are not completely understood, especially the role of the pressure transport remains unclear. The INTRAMIX experiment was conducted in a mountainous Norway spruce (Picea abies) forest at the Fluxnet Waldstein site (DE-Bay) in Bavaria, Germany, for a period of 10 weeks in order to experimentally evaluate the significance of the pressure transport to the TKE budget for the first time. The INTRAMIX data of the dense mountain forest was compared to observations from a sparse Ponderosa pine (Pinus ponderosa) stand in Oregon, USA, to study the influence of forest architecture. We hypothesized that the pressure transport is more important in dense forest canopies as the crown decouples the subcanopy from the buoyancy- and shear-driven flow above the canopy. It is also investigated how atmospheric stability influences the TKE budget. Based upon model results from literature we expect the pressure transport to act as a source for TKE especially under free convective and unstable dynamic stability. Results to date indicate that pressure transport is most important in the subcanopy with decreasing magnitude with increasing height. Nevertheless, pressure transport is a continuous source of TKE above the canopy, while in the canopy and subcanopy layer pressure transport acts both as a sink and source term for TKE. In the tree crown layer pressure transport is a source in the morning and afternoon hours and acts as a sink during the evening, while in the subcanopy pressure transport is a source around noon and during the night and acts as a sink in the early morning and afternoon hours. This complementary pattern suggests that the pressure transport is an important means for exchanging TKE across canopy layers.

Observation of organized structure in turbulent flow within and above a forest canopy

NASA Technical Reports Server (NTRS)

Gao, W.; Shaw, R. H.; Paw u, K. T.

1989-01-01

Data obtained with seven triaxial sonic anemometer/thermometers and three Lyman-alpha hygrometers at an experimental site in Ontario, Canada reveal the coherent occurrence of ramp patterns of temperature and humidity at several levels within and above the deciduous forest considered. The ramps appear most clearly in the middle and upper portion of the forest, and near the top of the forest they are composed of a weak ejecting motion transporting warm and/or moist air out of the forest, followed by strong sweeps of cool and/or dry air penetrating into the canopy. In the middle and upper parts of the canopy, the sweeps are found to conduct a large proportion of the overall transfer between the forest and the lower atmosphere, with a lesser contribution from ejections.

Research on spatial distribution of photosynthetic characteristics of Winter Wheat

NASA Astrophysics Data System (ADS)

Yan, Q. Q.; Zhou, Q. Y.; Zhang, B. Z.; Han, X.; Han, N. N.; Li, S. M.

2018-03-01

In order to explore the spatial distribution of photosynthetic characteristics of winter wheat leaf, the photosynthetic rate on different parts of leaf (leaf base-leaf middle-leaf apex) and that on each canopy (top layer-middle layer-bottom layer) leaf during the whole growth period of winter wheat were measured. The variation of photosynthetic rate with PAR and the spatial distribution of winter wheat leaf during the whole growth periods were analysed. The results showed that the photosynthetic rate of different parts of winter wheat increased with the increase of PAR, which was showed as leaf base>leaf middle>leaf apex. In the same growth period, photosynthetic rate in different parts of the tablet was showed as leaf middle>leaf base>leaf apex. For the different canopy layer of winter wheat, the photosynthetic rate of the top layer leaf was significantly greater than that of the middle layer and lower layer leaf. The photosynthetic rate of the top layer leaf was the largest in the leaf base position. The photosynthetic rate of leaf of the same canopy layer at different growth stages were showed as tasseling stage >grain filling stage > maturation stage.

Estimating canopy bulk density and canopy base height for conifer stands in the interior Western United States using the Forest Vegetation Simulator Fire and Fuels Extension.

Treesearch

Seth Ex; Frederick Smith; Tara Keyser; Stephanie Rebain

2017-01-01

The Forest Vegetation Simulator Fire and Fuels Extension (FFE-FVS) is often used to estimate canopy bulk density (CBD) and canopy base height (CBH), which are key indicators of crown fire hazard for conifer stands in the Western United States. Estimated CBD from FFE-FVS is calculated as the maximum 4 m running mean bulk density of predefined 0.3 m thick canopy layers (...

Difficulties with estimating city-wide urban forest cover change from national, remotely-sensed tree canopy maps

Treesearch

Jeffrey T. Walton

2008-01-01

Two datasets of percent urban tree canopy cover were compared. The first dataset was based on a 1991 AVHRR forest density map. The second was the US Geological Survey's National Land Cover Database (NLCD) 2001 sub-pixel tree canopy. A comparison of these two tree canopy layers was conducted in 36 census designated places of western New York State. Reference data...

Measurements of soil and canopy exchange rates in the Amazon rain forest using Rn-222

NASA Technical Reports Server (NTRS)

Trumbore, S. E.; Keller, M.; Wofsy, S. C.; Da Costa, J. M.

1990-01-01

Measurements were taken of the emission of Rn-222 from Amazon forest rocks and soils and used as a tracer of ventilation of the forest canopy layer at night. It was determined that the greatest resistance to transfer of trace gases from the soil to the atmosphere lies in the soil air space. Profiles of Rn-222 and CO2 showed steepest concentration gradients in the layer between 0 and 3 m above soil surface. Aerodynamic resistances calculated for this layer from Rn-222 and CO2 varied from 1.6 to 18 s/cm, with greater resistance during the afternoon than at night. The resistance to exchange with air from the entire 41 m layer below the canopy averaged 4.8 s/cm during 13 nights of CO2 profiles. The calculated average time to flush the layer below 41 m is 5.5 hr, and it is concluded that this indicates that significant exchange occurs despite nocturnal stratification.

A one- and two-layer model for estimating evapotranspiration with remotely sensed surface temperature and ground-based meteorological data over partial canopy cover

NASA Technical Reports Server (NTRS)

Kustas, William P.; Choudhury, Bhaskar J.; Kunkel, Kenneth E.

1989-01-01

Surface-air temperature differences are commonly used in a bulk resistance equation for estimating sensible heat flux (H), which is inserted in the one-dimensional energy balance equation to solve for the latent heat flux (LE) as a residual. Serious discrepancies between estimated and measured LE have been observed for partial-canopy-cover conditions, which are mainly attributed to inappropriate estimates of H. To improve the estimates of H over sparse canopies, one- and two-layer resistance models that account for some of the factors causing poor agreement are developed. The utility of the two models is tested with remotely sensed and micrometeorological data for a furrowed cotton field with 20 percent cover and a dry soil surface. It is found that the one-layer model performs better than the two-layer model when a theoretical bluff-body correction for heat transfer is used instead of an empirical adjustment; otherwise, the two-layer model is better.

Chemical transport models: the combined non-local diffusion and mixing schemes, and calculation of in-canopy resistance for dry deposition fluxes.

PubMed

Mihailovic, Dragutin T; Alapaty, Kiran; Podrascanin, Zorica

2009-03-01

Improving the parameterization of processes in the atmospheric boundary layer (ABL) and surface layer, in air quality and chemical transport models. To do so, an asymmetrical, convective, non-local scheme, with varying upward mixing rates is combined with the non-local, turbulent, kinetic energy scheme for vertical diffusion (COM). For designing it, a function depending on the dimensionless height to the power four in the ABL is suggested, which is empirically derived. Also, we suggested a new method for calculating the in-canopy resistance for dry deposition over a vegetated surface. The upward mixing rate forming the surface layer is parameterized using the sensible heat flux and the friction and convective velocities. Upward mixing rates varying with height are scaled with an amount of turbulent kinetic energy in layer, while the downward mixing rates are derived from mass conservation. The vertical eddy diffusivity is parameterized using the mean turbulent velocity scale that is obtained by the vertical integration within the ABL. In-canopy resistance is calculated by integration of inverse turbulent transfer coefficient inside the canopy from the effective ground roughness length to the canopy source height and, further, from its the canopy height. This combination of schemes provides a less rapid mass transport out of surface layer into other layers, during convective and non-convective periods, than other local and non-local schemes parameterizing mixing processes in the ABL. The suggested method for calculating the in-canopy resistance for calculating the dry deposition over a vegetated surface differs remarkably from the commonly used one, particularly over forest vegetation. In this paper, we studied the performance of a non-local, turbulent, kinetic energy scheme for vertical diffusion combined with a non-local, convective mixing scheme with varying upward mixing in the atmospheric boundary layer (COM) and its impact on the concentration of pollutants calculated with chemical and air-quality models. In addition, this scheme was also compared with a commonly used, local, eddy-diffusivity scheme. Simulated concentrations of NO2 by the COM scheme and new parameterization of the in-canopy resistance are closer to the observations when compared to those obtained from using the local eddy-diffusivity scheme. Concentrations calculated with the COM scheme and new parameterization of in-canopy resistance, are in general higher and closer to the observations than those obtained by the local, eddy-diffusivity scheme (on the order of 15-22%). To examine the performance of the scheme, simulated and measured concentrations of a pollutant (NO2) were compared for the years 1999 and 2002. The comparison was made for the entire domain used in simulations performed by the chemical European Monitoring and Evaluation Program Unified model (version UNI-ACID, rv2.0) where schemes were incorporated.

Investigating the European beech (Fagus sylvatica L.) leaf characteristics along the vertical canopy profile: leaf structure, photosynthetic capacity, light energy dissipation and photoprotection mechanisms.

PubMed

Scartazza, Andrea; Di Baccio, Daniela; Bertolotto, Pierangelo; Gavrichkova, Olga; Matteucci, Giorgio

2016-09-01

Forest functionality and productivity are directly related to canopy light interception and can be affected by potential damage from high irradiance. However, the mechanisms by which leaves adapt to the variable light environments along the multilayer canopy profile are still poorly known. We explored the leaf morphophysiological and metabolic responses to the natural light gradient in a pure European beech (Fagus sylvatica L.) forest at three different canopy heights (top, middle and bottom). Structural adjustment through light-dependent modifications in leaf mass per area was the reason for most of the variations in photosynthetic capacity. The different leaf morphology along the canopy influenced nitrogen (N) partitioning, water- and photosynthetic N-use efficiency, chlorophyll (Chl) fluorescence and quali-quantitative contents of photosynthetic pigments. The Chl a to Chl b ratio and the pool of xanthophyll-cycle pigments (VAZ) increased at the highest irradiance, as well as lutein and β-carotene. The total pool of ascorbate and phenols was higher in leaves of the top and middle canopy layers when compared with the bottom layer, where the ascorbate peroxidase was relatively more activated. The non-photochemical quenching was strongly and positively related to the VAZ/(Chl a + b) ratio, while Chl a/Chl b was related to the photochemical efficiency of photosystem II. Along the multilayer canopy profile, the high energy dissipation capacity of leaves was correlated to an elevated redox potential of antioxidants. The middle layer gave the most relevant contribution to leaf area index and carboxylation capacity of the canopy. In conclusion, a complex interplay among structural, physiological and biochemical traits drives the dynamic leaf acclimation to the natural gradients of variable light environments along the tree canopy profile. The relevant differences observed in leaf traits within the canopy positions of the beech forest should be considered for improving estimation of carbon fluxes in multilayer canopy models of temperate forests. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

ROLE OF CANOPY-SCALE PHOTOCHEMISTRY IN MODIFYING BIOGENIC-ATMOSPHERE EXCHANGE OF REACTIVE TERPENE SPECIES: RESULTS FROM THE CELTIC FIELD STUDY

EPA Science Inventory

A one-dimensional canopy model was used to quantify the impact of photochemistry in modifying biosphere-atmosphere exchange of trace gases. Canopy escape efficiencies, defined as the fraction of emission that escapes into the well-mixed boundary layer, were calculated for reactiv...

Verification of a One-Dimensional Model of CO2 Atmospheric Transport Inside and Above a Forest Canopy Using Observations at the Norunda Research Station

NASA Astrophysics Data System (ADS)

Kovalets, Ivan; Avila, Rodolfo; Mölder, Meelis; Kovalets, Sophia; Lindroth, Anders

2018-02-01

A model of CO2 atmospheric transport in vegetated canopies is tested against measurements of the flow, as well as CO2 concentrations at the Norunda research station located inside a mixed pine-spruce forest. We present the results of simulations of wind-speed profiles and CO2 concentrations inside and above the forest canopy with a one-dimensional model of profiles of the turbulent diffusion coefficient above the canopy accounting for the influence of the roughness sub-layer on turbulent mixing according to Harman and Finnigan (Boundary-Layer Meteorol 129:323-351, 2008; hereafter HF08). Different modelling approaches are used to define the turbulent exchange coefficients for momentum and concentration inside the canopy: (1) the modified HF08 theory—numerical solution of the momentum and concentration equations with a non-constant distribution of leaf area per unit volume; (2) empirical parametrization of the turbulent diffusion coefficient using empirical data concerning the vertical profiles of the Lagrangian time scale and root-mean-square deviation of the vertical velocity component. For neutral, daytime conditions, the second-order turbulence model is also used. The flexibility of the empirical model enables the best fit of the simulated CO2 concentrations inside the canopy to the observations, with the results of simulations for daytime conditions inside the canopy layer only successful provided the respiration fluxes are properly considered. The application of the developed model for radiocarbon atmospheric transport released in the form of ^{14}CO2 is presented and discussed.

Verification of a One-Dimensional Model of CO2 Atmospheric Transport Inside and Above a Forest Canopy Using Observations at the Norunda Research Station

NASA Astrophysics Data System (ADS)

Kovalets, Ivan; Avila, Rodolfo; Mölder, Meelis; Kovalets, Sophia; Lindroth, Anders

2018-07-01

A model of CO2 atmospheric transport in vegetated canopies is tested against measurements of the flow, as well as CO2 concentrations at the Norunda research station located inside a mixed pine-spruce forest. We present the results of simulations of wind-speed profiles and CO2 concentrations inside and above the forest canopy with a one-dimensional model of profiles of the turbulent diffusion coefficient above the canopy accounting for the influence of the roughness sub-layer on turbulent mixing according to Harman and Finnigan (Boundary-Layer Meteorol 129:323-351, 2008; hereafter HF08). Different modelling approaches are used to define the turbulent exchange coefficients for momentum and concentration inside the canopy: (1) the modified HF08 theory—numerical solution of the momentum and concentration equations with a non-constant distribution of leaf area per unit volume; (2) empirical parametrization of the turbulent diffusion coefficient using empirical data concerning the vertical profiles of the Lagrangian time scale and root-mean-square deviation of the vertical velocity component. For neutral, daytime conditions, the second-order turbulence model is also used. The flexibility of the empirical model enables the best fit of the simulated CO2 concentrations inside the canopy to the observations, with the results of simulations for daytime conditions inside the canopy layer only successful provided the respiration fluxes are properly considered. The application of the developed model for radiocarbon atmospheric transport released in the form of ^{14}CO2 is presented and discussed.

Mathematical Structure of Electromagnetic Terrain Feature Canopy Models.

DTIC Science & Technology

1982-11-01

problems in this formulation is how to introduce canopy abstraction and how to project the foliage area index. Suits -- - "-7 U -16- (1972...extinction coefficient of light through vegetation canopy will determine how the beam will be depleted with depth. The intensity of light reaching the...describe how lations of the canopy reflectance problem are being at- layer i responds to flux incident from below. The flux tempted, most notably by Verhoef

Canopy carbon budget of Siebold's beech (Fagus crenata) sapling under free air ozone exposure.

PubMed

Watanabe, Makoto; Hoshika, Yasutomo; Inada, Naoki; Koike, Takayoshi

2014-01-01

To determine the effects of ozone (O3) on the canopy carbon budget, we investigated photosynthesis and respiration of leaves of Siebold's beech saplings under free air O3 exposure (60 nmol mol(-1), during daytime) in relation to the within-canopy light gradient; we then calculated the canopy-level photosynthetic carbon gain (PCG) and respiratory carbon loss (RCL) using a canopy photosynthesis model. Susceptibilities of photosynthesis and respiration to O3 were greater in leaves of upper canopy than in the lower canopy. The canopy net carbon gain (NCG) was reduced by O3 by 12.4% during one growing season. The increased RCL was the main factor for the O3-induced reduction in NCG in late summer, while contributions of the reduced PCG and the increased RCL to the NCG were almost the same in autumn. These results indicate contributions of changes in PCG and RCL under O3 to NCG were different between seasons. Copyright © 2013 Elsevier Ltd. All rights reserved.

Divergent N Deficiency-Dependent Senescence and Transcriptome Response in Developmentally Old and Young Brassica napus Leaves

PubMed Central

Safavi-Rizi, Vajiheh; Franzaring, Jürgen; Fangmeier, Andreas; Kunze, Reinhard

2018-01-01

In the spring oilseed rape (OSR) cultivar ‘Mozart’ grown under optimal N supply (NO) or mild N deficiency (NL) the transcriptome changes associated with progressing age until early senescence in developmentally old lower canopy leaves (leaf #4) and younger higher canopy leaves (leaf #8) were investigated. Twelve weeks old NO and NL plants appeared phenotypically and transcriptomically identical, but thereafter distinct nutrition-dependent differences in gene expression patterns in lower and upper canopy leaves emerged. In NO leaves #4 of 14-week-old compared to 13-week-old plants, ∼600 genes were up- or downregulated, whereas in NL leaves #4 ∼3000 genes were up- or downregulated. In contrast, in 15-week-old compared to 13-week-old upper canopy leaves #8 more genes were up- or downregulated in optimally N-supplied plants (∼2000 genes) than in N-depleted plants (∼750 genes). This opposing effect of N depletion on gene regulation was even more prominent among photosynthesis-related genes (PSGs). Between week 13 and 14 in leaves #4, 99 of 110 PSGs were downregulated in NL plants, but none in NO plants. In contrast, from weeks 13 to 16 in leaves #8 of NL plants only 11 PSGs were downregulated in comparison to 66 PSGs in NO plants. Different effects of N depletion in lower versus upper canopy leaves were also apparent in upregulation of autophagy genes and NAC transcription factors. More than half of the regulated NAC and WRKY transcription factor, autophagy and protease genes were specifically regulated in NL leaves #4 or NO leaves #8 and thus may contribute to differences in senescence and nutrient mobilization in these leaves. We suggest that in N-deficient plants the upper leaves retain their N resources longer than in amply fertilized plants and remobilize them only after shedding of the lower leaves. PMID:29449851

Influence of regional nighttime atmospheric regimes on canopy turbulence and gradients at a closed and open forest in mountain-valley terrain

DOE PAGES

Wharton, S.; Ma, S.; Baldocchi, D. D.; ...

2017-02-07

Stable stratification of the nocturnal lower boundary layer inhibits convective turbulence, such that turbulent vertical transfer of ecosystem carbon dioxide (CO 2), water vapor (H 2O) and energy is driven by mechanically forced turbulence, either from frictional forces near the ground or top of a plant canopy, or from shear generated aloft. The significance of this last source of turbulence on canopy flow characteristics in a closed and open forest canopy is addressed in this paper. We present micrometeorological observations of the lower boundary layer and canopy air space collected on nearly 200 nights using a combination of atmospheric lasermore » detection and ranging (lidar), eddy covariance (EC), and tower profiling instrumentation. Two AmeriFlux/Fluxnet sites in mountain-valley terrain in the Western U.S. are investigated: Wind River, a tall, dense conifer canopy, and Tonzi Ranch, a short, open oak canopy. On roughly 40% of nights lidar detected down-valley or downslope flows above the canopy at both sites. Nights with intermittent strong bursts of “top-down” forced turbulence were also observed above both canopies. The strongest of these bursts increased sub-canopy turbulence and reduced canopy virtual potential temperature (θv) gradient at Tonzi, but did not appear to change the flow characteristics within the dense Wind River canopy. At Tonzi we observed other times when high turbulence (via friction velocity, u*) was found just above the trees, yet CO2 and θv gradients remained large and suggested flow decoupling. These events were triggered by regional downslope flow. Lastly, a set of turbulence parameters is evaluated for estimating canopy turbulence mixing strength. The relationship between turbulence parameters and canopy θv gradients was found to be complex, although better agreement between the canopy θv gradient and turbulence was found for parameters based on the standard deviation of vertical velocity, or ratios of 3-D turbulence to mean flow, than for u*. These findings add evidence that the relationship between canopy turbulence, static stability, and canopy mixing is far from straightforward even within an open canopy.« less

Influence of regional nighttime atmospheric regimes on canopy turbulence and gradients at a closed and open forest in mountain-valley terrain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wharton, S.; Ma, S.; Baldocchi, D. D.

Stable stratification of the nocturnal lower boundary layer inhibits convective turbulence, such that turbulent vertical transfer of ecosystem carbon dioxide (CO 2), water vapor (H 2O) and energy is driven by mechanically forced turbulence, either from frictional forces near the ground or top of a plant canopy, or from shear generated aloft. The significance of this last source of turbulence on canopy flow characteristics in a closed and open forest canopy is addressed in this paper. We present micrometeorological observations of the lower boundary layer and canopy air space collected on nearly 200 nights using a combination of atmospheric lasermore » detection and ranging (lidar), eddy covariance (EC), and tower profiling instrumentation. Two AmeriFlux/Fluxnet sites in mountain-valley terrain in the Western U.S. are investigated: Wind River, a tall, dense conifer canopy, and Tonzi Ranch, a short, open oak canopy. On roughly 40% of nights lidar detected down-valley or downslope flows above the canopy at both sites. Nights with intermittent strong bursts of “top-down” forced turbulence were also observed above both canopies. The strongest of these bursts increased sub-canopy turbulence and reduced canopy virtual potential temperature (θv) gradient at Tonzi, but did not appear to change the flow characteristics within the dense Wind River canopy. At Tonzi we observed other times when high turbulence (via friction velocity, u*) was found just above the trees, yet CO2 and θv gradients remained large and suggested flow decoupling. These events were triggered by regional downslope flow. Lastly, a set of turbulence parameters is evaluated for estimating canopy turbulence mixing strength. The relationship between turbulence parameters and canopy θv gradients was found to be complex, although better agreement between the canopy θv gradient and turbulence was found for parameters based on the standard deviation of vertical velocity, or ratios of 3-D turbulence to mean flow, than for u*. These findings add evidence that the relationship between canopy turbulence, static stability, and canopy mixing is far from straightforward even within an open canopy.« less

Patterns of Canopy and Surface Layer Consumption in a Boreal Forest Fire from Repeat Airborne Lidar

NASA Technical Reports Server (NTRS)

Alonzo, Michael; Morton, Douglas C.; Cook, Bruce D.; Andersen, Hans-Erik; Babcock, Chad; Pattison, Robert

2017-01-01

Fire in the boreal region is the dominant agent of forest disturbance with direct impacts on ecosystem structure, carbon cycling, and global climate. Global and biome-scale impacts are mediated by burn severity, measured as loss of forest canopy and consumption of the soil organic layer. To date, knowledge of the spatial variability in burn severity has been limited by sparse field sampling and moderate resolution satellite data. Here, we used pre- and post-fire airborne lidar data to directly estimate changes in canopy vertical structure and surface elevation for a 2005 boreal forest fire on Alaskas Kenai Peninsula. We found that both canopy and surface losses were strongly linked to pre-fire species composition and exhibited important fine-scale spatial variability at sub-30m resolution. The fractional reduction in canopy volume ranged from 0.61 in lowland black spruce stands to 0.27 in mixed white spruce and broad leaf forest. Residual structure largely reflects standing dead trees, highlighting the influence of pre-fire forest structure on delayed carbon losses from above ground biomass, post-fire albedo, and variability in understory light environments. Median loss of surface elevation was highest in lowland black spruce stands (0.18 m) but much lower in mixed stands (0.02 m), consistent with differences in pre-fire organic layer accumulation. Spatially continuous depth-of-burn estimates from repeat lidar measurements provide novel information to constrain carbon emissions from the surface organic layer and may inform related research on post-fire successional trajectories. Spectral measures of burn severity from Landsat were correlated with canopy (r = 0.76) and surface (r = -0.71) removal in black spruce stands but captured less of the spatial variability in fire effects for mixed stands (canopy r = 0.56, surface r = -0.26), underscoring the difficulty in capturing fire effects in heterogeneous boreal forest landscapes using proxy measures of burn severity from Landsat.

Patterns of canopy and surface layer consumption in a boreal forest fire from repeat airborne lidar

NASA Astrophysics Data System (ADS)

Alonzo, Michael; Morton, Douglas C.; Cook, Bruce D.; Andersen, Hans-Erik; Babcock, Chad; Pattison, Robert

2017-05-01

Fire in the boreal region is the dominant agent of forest disturbance with direct impacts on ecosystem structure, carbon cycling, and global climate. Global and biome-scale impacts are mediated by burn severity, measured as loss of forest canopy and consumption of the soil organic layer. To date, knowledge of the spatial variability in burn severity has been limited by sparse field sampling and moderate resolution satellite data. Here, we used pre- and post-fire airborne lidar data to directly estimate changes in canopy vertical structure and surface elevation for a 2005 boreal forest fire on Alaska’s Kenai Peninsula. We found that both canopy and surface losses were strongly linked to pre-fire species composition and exhibited important fine-scale spatial variability at sub-30 m resolution. The fractional reduction in canopy volume ranged from 0.61 in lowland black spruce stands to 0.27 in mixed white spruce and broadleaf forest. Residual structure largely reflects standing dead trees, highlighting the influence of pre-fire forest structure on delayed carbon losses from aboveground biomass, post-fire albedo, and variability in understory light environments. Median loss of surface elevation was highest in lowland black spruce stands (0.18 m) but much lower in mixed stands (0.02 m), consistent with differences in pre-fire organic layer accumulation. Spatially continuous depth-of-burn estimates from repeat lidar measurements provide novel information to constrain carbon emissions from the surface organic layer and may inform related research on post-fire successional trajectories. Spectral measures of burn severity from Landsat were correlated with canopy (r = 0.76) and surface (r = -0.71) removal in black spruce stands but captured less of the spatial variability in fire effects for mixed stands (canopy r = 0.56, surface r = -0.26), underscoring the difficulty in capturing fire effects in heterogeneous boreal forest landscapes using proxy measures of burn severity from Landsat.

Parachute Decelerator System Performance During the Low Density Supersonic Decelerator Program's First Supersonic Flight Dynamics Test

NASA Technical Reports Server (NTRS)

Gallon, John C.; Clark, Ian G.; Witkowski, Allen

2015-01-01

During the first Supersonic Flight Dynamics Test (SFDT-1) for NASA's Low Density Supersonic Decelerator (LDSD) Program, the Parachute Decelerator System (PDS) was successfully tested. The main parachute in the PDS was a 30.5-meter supersonic Disksail parachute. The term Disksail is derived from the canopy's constructional geometry, as it combined the aspects of a ringsail and a flat circular round (disk) canopy. The crown area of the canopy contained the disk feature, as a large flat circular disk that extended from the canopy's vent down to the upper gap. From this upper gap to the skirt-band the canopy was constructed with characteristics of sails seen in a ringsail. There was a second lower gap present in this sail region. The canopy maintained a nearly 10x forebody diameter trailing distance with 1.7 Do suspension line lengths. During the test, the parachute was deployed at the targeted Mach and dynamic pressure. Although the supersonic Disksail parachute experienced an anomaly during the inflation process, the system was tested successfully in the environment it was designed to operate within. The nature of the failure seen originated in the disk portion of the canopy. High-speed and high-resolution imagery of the anomaly was captured and has been used to aid in the forensics of the failure cause. In addition to the imagery, an inertial measurement unit (IMU) recorded test vehicle dynamics and loadcells captured the bridle termination forces. In reviewing the imagery and load data a number of hypothesizes have been generated in an attempt to explain the cause of the anomaly.

A Lidar Point Cloud Based Procedure for Vertical Canopy Structure Analysis And 3D Single Tree Modelling in Forest

PubMed Central

Wang, Yunsheng; Weinacker, Holger; Koch, Barbara

2008-01-01

A procedure for both vertical canopy structure analysis and 3D single tree modelling based on Lidar point cloud is presented in this paper. The whole area of research is segmented into small study cells by a raster net. For each cell, a normalized point cloud whose point heights represent the absolute heights of the ground objects is generated from the original Lidar raw point cloud. The main tree canopy layers and the height ranges of the layers are detected according to a statistical analysis of the height distribution probability of the normalized raw points. For the 3D modelling of individual trees, individual trees are detected and delineated not only from the top canopy layer but also from the sub canopy layer. The normalized points are resampled into a local voxel space. A series of horizontal 2D projection images at the different height levels are then generated respect to the voxel space. Tree crown regions are detected from the projection images. Individual trees are then extracted by means of a pre-order forest traversal process through all the tree crown regions at the different height levels. Finally, 3D tree crown models of the extracted individual trees are reconstructed. With further analyses on the 3D models of individual tree crowns, important parameters such as crown height range, crown volume and crown contours at the different height levels can be derived. PMID:27879916

A source of methane from upland forests in the Brazilian Amazon.

Treesearch

Janaina Braga do Carmo; Michael Keller; Jadson Dezincourt Dias; Plinio Barbosa de Camargo; Patrick Crill

2006-01-01

We sampled air in the canopy layer of undisturbed upland forests during wet and dry seasons at three sites in the Brazilian Amazon region and found that both methane(CH4) and carbon dioxide (CO2) mixing ratios increased at night. Such increases were consistent across sites and seasons. A canopy layer budget model based on measured soil-atmosphere fluxes of CO2 was...

Multi-temporal UAV-borne LiDAR point clouds for vegetation analysis - a case study

NASA Astrophysics Data System (ADS)

Mandlburger, Gottfried; Wieser, Martin; Hollaus, Markus; Pfennigbauer, Martin; Riegl, Ursula

2016-04-01

In the recent past the introduction of compact and lightweight LiDAR (Light Detection And Ranging) sensors together with progress in UAV (Unmanned Aerial Vehicle) technology allowed the integration of laser scanners on remotely piloted multicopter, helicopter-type and even fixed-wing platforms. The multi-target capabilities of state-of-the-art time-of-flight full-waveform laser sensors operated from low flying UAV-platforms has enabled capturing of the entire 3D structure of semi-transparent objects like deciduous forests under leaf-off conditions in unprecedented density and completeness. For such environments it has already been demonstrated that UAV-borne laser scanning combines the advantages of terrestrial laser scanning (high point density, short range) and airborne laser scanning (bird's eye perspective, homogeneous point distribution). Especially the oblique looking capabilities of scanners with a large field of view (>180°) enable capturing of vegetation from different sides resulting in a constantly high point density also in the sub canopy domain. Whereas the findings stated above were drawn based on a case study carried out in February 2015 with the Riegl VUX-1UAV laser scanner system mounted on a Riegl RiCopter octocopter UAV-platform over an alluvial forest at the Pielach River (Lower Austria), the site was captured a second time with the same sensor system and mission parameters at the end of the vegetation period on October 28th, 2015. The main goal of this experiment was to assess the impact of the late autumn foliage on the achievable 3D point density. Especially the entire understory vegetation and certain tree species (e.g. willow) were still in full leaf whereas the bigger trees (poplar) where already partly defoliated. The comparison revealed that, although both campaigns featured virtually the same laser shot count, the ground point density dropped from 517 points/m2 in February (leaf-off) to 267 points/m2 end of October (leaf-on). The decrease of ca. 50% is compensated by an increase in the upper canopy area (>20 m a.g.l.; Feb: 348 points/m2, Oct: 757 points/m2, increase rate: 118%). The greater leaf area in October results in more laser echoes from the canopy but the density decrease on the ground is not entirely attributed to shadowing from the upper canopy as the point distribution is nearly constant in the medium (10-20 m) and lower (0-10 m) sub-canopy area. The lower density on the ground is rather caused by a densely foliated shrub layer (0.15-3 m; Feb: 178 points/m2, Oct: 259 points/m2, increase rate: 46%). A sharp ground point density drop could be observed in areas covered by an invasive weed species (Fallopia japonica) which keeps its extremely dense foliage till late in the year. In summary, the preliminary point density study has shown the potential of UAV-borne, multi-temporal LiDAR for characterization of seasonal vegetation changes in deciduous environments. It is remarkable that even under leaf-on conditions a very high terrain point density is achievable. Except for the dense shrub layer, the case study has shown a similar 3D point distribution in the sub-canopy area for leaf-off and leaf-on data acquisition.

Air Parcel Residence Times within Tropical Forest Canopies and Implications for Reactive Gases

NASA Astrophysics Data System (ADS)

Gerken, T.; Chamecki, M.; Fuentes, J. D.

2014-12-01

The Amazon rainforest is the world's largest natural emitter of reactive trace gases. Due to its dense vegetation (leaf area index > 4), turbulence fluctuations are highly attenuated deep inside the canopy. However, strong coherent eddies that penetrate the upper portion of the canopy can be very effective in transporting gases. Sweeps and ejections act in the order of seconds and transport air parcels into or out of the canopy. The effects of coherent structures on the air parcel residence times and associated chemical processing of reactive gases remain largely unquantified in tropical forests. We combine canopy resolving Large-Eddy Simulation (LES) and field observations in the Brazilian Amazon to study residence times of air parcels in the rainforest as a function of canopy structure and height (h). Good agreement is obtained between simulated and observed turbulence statistics within and above the forest. Coherent structure properties obtained from quadrant analysis are also well reproduced. A Lagrangian particle tracking algorithm is used to quantify the distribution of residence times of air parcels "released" at different heights. Canopy residence times were determined from the particle trajectories. The resulting probability density function (PDF) strongly depended on the particle release height (z). For particles released in the upper canopy (at z/h=0.75) the most frequent residence times were in the order of 30s, with 50% of all particles ejected from the canopy after ~2 minutes. The mean residence time was close to 5 minutes, indicating a very skewed PDF. At z/h=0.25 the PDF was more evenly distributed with its median and mean in the order of ~10 minutes. Due to sweeps, both simulations had a non- negligible fraction of particles transported deep into the canopy, thus increasing greatly their residence times. As the reaction timescales of many biogenic volatile organic compounds (BVOC) are in the order of seconds to minutes, significant chemical processing can take place before particles are transported out of the canopy. This result highlights the importance of coherent motions on the capability of BVOC to escape the canopy space. Hence, it is important to consider the real distribution of residence times, highlighting the need for accurate canopy representation in LES models.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jardine, A. B.; Jardine, K. J.; Fuentes, J. D.

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissionsmore » of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazon tree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.« less

Highly reactive light-dependent monoterpenes in the Amazon

NASA Astrophysics Data System (ADS)

Jardine, A. B.; Jardine, K. J.; Fuentes, J. D.; Martin, S. T.; Martins, G.; Durgante, F.; Carneiro, V.; Higuchi, N.; Manzi, A. O.; Chambers, J. Q.

2015-03-01

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissions of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazon tree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.

An analytical model for the distribution of CO2 sources and sinks, fluxes, and mean concentration within the roughness sub-layer

NASA Astrophysics Data System (ADS)

Siqueira, M. B.; Katul, G. G.

2009-12-01

A one-dimensional analytical model that predicts foliage CO2 uptake rates, turbulent fluxes, and mean concentration throughout the roughness sub-layer (RSL), a layer that extends from the ground surface up to 5 times the canopy height (h), is proposed. The model combines the mean continuity equation for CO2 with first-order closure principles for turbulent fluxes and simplified physiological and radiative transfer schemes for foliage uptake. This combination results in a second-order ordinary differential equation in which it is imposed soil respiration (RE) as lower and CO2 concentration well above the RSL as upper boundary conditions. An inverse version of the model was tested against data sets from two contrasting ecosystems: a tropical forest (TF, h=40 m) and a managed irrigated rice canopy (RC, h=0.7 m) - with good agreement noted between modeled and measured mean CO2 concentration profiles within the entire RSL (see figure). Sensitivity analysis on the model parameters revealed a plausible scaling regime between them and a dimensionless parameter defined by the ratio between external (RE) and internal (stomatal conductance) characteristics controlling the CO2 exchange process. The model can be used to infer the thickness of the RSL for CO2 exchange, the inequality in zero-plane displacement between CO2 and momentum, and its consequences on modeled CO2 fluxes. A simplified version of the solution is well suited for being incorporated into large-scale climate models. Furthermore, the model framework here can be used to a priori estimate relative contributions from the soil surface and the atmosphere to canopy-air CO2 concentration thereby making it synergetic to stable isotopes studies. Panels a) and c): Profiles of normalized measured leaf area density distribution (a) for TF and RC, respectively. Continuous lines are the constant a used in the model and dashed lines represent data-derived profiles. Panels b) and d) are modeled and ensemble-averaged measured CO2 profiles reference to the uppermost measured point for TF and RC, respectively.

Stable annual pattern of water use by Acacia tortilis in Sahelian Africa.

PubMed

Do, Frederic C; Rocheteau, Alain; Diagne, Amadou L; Goudiaby, Venceslas; Granier, André; Lhomme, Jean-Paul

2008-01-01

Water use by mature trees of Acacia tortilis (Forsk.) Hayne ssp. raddiana (Savi) Brenan var. raddiana growing in the northern Sahel was continuously recorded over 4 years. Water use was estimated from xylem sap flow measured by transient heat dissipation. Concurrently, cambial growth, canopy phenology, leaf water potential, climatic conditions and soil water availability (SWA) were monitored. In addition to the variation attributable to interannual variation in rainfall, SWA was increased by irrigation during one wet season. The wet season lasted from July to September, and annual rainfall ranged between 146 and 367 mm. The annual amount and pattern of tree water use were stable from year-to-year despite interannual and seasonal variations in SWA in the upper soil layers. Acacia tortilis transpired readily throughout the year, except for one month during the dry season when defoliation was at a maximum. Maximum water use of about 23 l (dm sapwood area)(-2) day(-1) was recorded at the end of the wet season. While trees retained foliage in the dry season, the decline in water use was modest at around 30%. Variation in predawn leaf water potential indicated that the trees were subject to soil water constraint. The rapid depletion of water in the uppermost soil layers after the wet season implies that there was extensive use of water from deep soil layers. The deep soil profile revealed (1) the existence of living roots at 25 m and (2) that the availability of soil water was low (-1.6 MPa) down to the water table at a depth of 31 m. However, transpiration was recorded at a predawn leaf water potential of -2.0 MPa, indicating that the trees used water from both intermediary soil layers and the water table. During the full canopy stage, mean values of whole-tree hydraulic conductance were similar in the wet and dry seasons. We propose that the stability of water use at the seasonal and annual scales resulted from a combination of features, including an extensive rooting habit related to deep water availability and an effective regulation of canopy conductance. Despite a limited effect on tree water use, irrigation during the wet season sharply increased predawn leaf water potential and cambial growth of trunks and branches.

Relationship of attenuation in a vegetation canopy to physical parameters of the canopy

NASA Technical Reports Server (NTRS)

Karam, M. A.; Levine, D. M.

1993-01-01

A discrete scatter model is employed to compute the radiometric response (i.e. emissivity) of a layer of vegetation over a homogeneous ground. This was done to gain insight into empirical formulas for the emissivity which have recently appeared in the literature and which indicate that the attenuation through the canopy is proportional to the water content of the vegetation and inversely proportional to wavelength raised to a power around unity. The analytical result assumes that the vegetation can be modeled by a sparse layer of discrete, randomly oriented particles (leaves, stalks, etc.). The attenuation is given by the effective wave number of the layer obtained from the solution for the mean wave using the effective field approximation. By using the Ulaby-El Rayes formula to relate the dielectric constant of the vegetation to its water content, it can be shown that the attenuation is proportional to water content. The analytical form offers insight into the dependence of the empirical parameters on other variables of the canopy, including plant geometry (i.e. shape and orientation of the leaves and stalks of which the vegetation is comprised), frequency of the measurement and even the physical temperature of the vegetation. Solutions are presented for some special cases including layers consisting of cylinders (stalks) and disks (leaves).

Mapping forest canopy disturbance in the Upper Great Lakes, USA

Treesearch

James D. Garner; Mark D. Nelson; Brian G. Tavernia; Charles H. (Hobie) Perry; Ian W. Housman

2015-01-01

A map of forest canopy disturbance was generated for Michigan, Wisconsin, and most of Minnesota using 42 Landsat time series stacks (LTSS) and a vegetation change tracker (VCTw) algorithm. Corresponding winter imagery was used to reduce commission errors of forest disturbance by identifying areas of persistent snow cover. The resulting disturbance age map was classed...

Variation in morphological and biochemical O3 injury attributes of mature Jeffrey pine within canopies and between microsites

Treesearch

Nancy Grulke; R. Johnson; S. Monschein; P. Nikolova; M. Tausz

2003-01-01

Crown morphology and leaf tissue chemical and biochemical attributes associated with ozone (O3) injury were assessed in the lower, mid- and upper canopy of Jeffrey pine (Pinus jeffreyi Grev. & Balf.) growing in mesic and xeric microsites in Sequoia National Park, California. Microsites were designated mesic or xeric...

Remote estimation of a managed pine forest evapotranspiration with geospatial technology

Treesearch

S. Panda; D.M. Amatya; G Sun; A. Bowman

2016-01-01

Remote sensing has increasingly been used to estimate evapotranspiration (ET) and its supporting parameters in a rapid, accurate, and cost-effective manner. The goal of this study was to develop remote sensing-based models for estimating ET and the biophysical parameters canopy conductance (gc), upper-canopy temperature, and soil moisture for a mature loblolly pine...

The Role of Vegetation Response to Elevated CO2 in Modifying Land-Atmosphere Feedback Across the Central United States Agro-Ecosystem

NASA Astrophysics Data System (ADS)

Drewry, D.; Kumar, P.; Sivapalan, M.; Long, S.; Liang, X.

2009-05-01

Recent local-scale observational studies have demonstrated significant modifications to the partitioning of incident energy by two key mid-west agricultural species, soy and corn, as ambient atmospheric CO2 concentrations are experimentally augmented to projected future levels. The uptake of CO2 by soy, which utilizes the C3 photosynthetic pathway, has likewise been observed to significantly increase under elevated growth CO2 concentrations. Changes to the sensible and latent heat exchanges between the land surface and the atmospheric boundary layer (ABL) across large portions of the mid-western US has the potential to affect ABL growth and composition, and consequently feed-back to the near-surface environment (air temperature and vapor content) experienced by the vegetation. Here we present a simulation analysis that examines the changes in land-atmosphere feedbacks associated with projected increases in ambient CO2 concentrations over extended soy/corn agricultural areas characteristic of the US mid-west. The model canopies are partitioned into several layers, allowing for resolution of the shortwave and longwave radiation regimes that drive photosynthesis, stomatal conductance and leaf energy balance in each layer, along with the canopy microclimate. The canopy component of the model is coupled to a multi-layer soil-root model that computes soil moisture and heat transport and root water uptake. Model skill in capturing the sub-diurnal variability in canopy-atmosphere exchange is evaluated through multi-year records of canopy-top eddy covariance CO2, water vapor and heat fluxes collected at the Bondville (Illinois) FluxNet site. An evaluation of the ability of the model to simulate observed changes in energy balance components (canopy temperature, net radiation and soil heat flux) under elevated CO2 concentrations projected for 2050 (550 ppm) is made using observations collected at the SoyFACE Free Air Carbon Enrichment (FACE) experimental facilities located in central Illinois, by incorporating observed acclimations in leaf biochemsitry and canopy structure. The simulation control volume is then extended by coupling the canopy models to a simple model of daytime mixed-layer (ML) growth and composition, ie. air temperature and vapor content. Through this coupled canopy-ABL model we quantify the impact of elevated CO2 and vegetation acclimation on ML growth, temperature and vapor content and the consequent feedbacks to the land surface by way of the near-surface environment experienced by the vegetation. Particular focus is placed on the role of short-term drought, and possible changes in land cover composition between soy, a C3 crop, and corn, a more water-use efficient C4 crop, on modulating the strength of these CO2-induced feedbacks.

The Photochemical Reflectance Index from Directional Cornfield Reflectances: Observations and Simulations

NASA Technical Reports Server (NTRS)

Cheng, Yen-Ben; Middleton, Elizabeth M.; Zhang, Qingyuan; Corp, Lawrence A.; Dandois, Jonathan; Kustas, William P.

2012-01-01

The two-layer Markov chain Analytical Canopy Reflectance Model (ACRM) was linked with in situ hyperspectral leaf optical properties to simulate the Photochemical Reflectance Index (PRI) for a corn crop canopy at three different growth stages. This is an extended study after a successful demonstration of PRI simulations for a cornfield previously conducted at an early vegetative growth stage. Consistent with previous in situ studies, sunlit leaves exhibited lower PRI values than shaded leaves. Since sunlit (shaded) foliage dominates the canopy in the reflectance hotspot (coldspot), the canopy PRI derived from field hyperspectral observations displayed sensitivity to both view zenith angle and relative azimuth angle at all growth stages. Consequently, sunlit and shaded canopy sectors were most differentiated when viewed along the azimuth matching the solar principal plane. These directional PRI responses associated with sunlit/shaded foliage were successfully reproduced by the ACRM. As before, the simulated PRI values from the current study were closer to in situ values when both sunlit and shaded leaves were utilized as model input data in a two-layer mode, instead of a one-layer mode with sunlit leaves only. Model performance as judged by correlation between in situ and simulated values was strongest for the mature corn crop (r = 0.87, RMSE = 0.0048), followed by the early vegetative stage (r = 0.78; RMSE = 0.0051) and the early senescent stage (r = 0.65; RMSE = 0.0104). Since the benefit of including shaded leaves in the scheme varied across different growth stages, a further analysis was conducted to investigate how variable fractions of sunlit/shaded leaves affect the canopy PRI values expected for a cornfield, with implications for 20 remote sensing monitoring options. Simulations of the sunlit to shaded canopy ratio near 50/50 +/- 10 (e.g., 60/40) matching field observations at all growth stages were examined. Our results suggest in the importance of the sunlit/shaded fraction and canopy structure in understanding and interpreting PRI.

Determining density of maize canopy. 1: Digitized photography

NASA Technical Reports Server (NTRS)

Stoner, E. R.; Baumgardner, M. F.; Swain, P. H.

1972-01-01

The relationship between different densities of maize (Zea mays L.) canopies and the energy reflected by these canopies was studied. Field plots were laid out, representing four growth stages of maize, on a dark soil and on a very light colored surface soil. Spectral and spatial data were obtained from color and color infrared photography taken from a vertical distance of 10 m above the maize canopies. Estimates of ground cover were related to field measurements of leaf area index. Ground cover was predicted from leaf area index measurements by a second order equation. Color infrared photography proved helpful in determining the density of maize canopy on dark soils. Color photography was useful for determining canopy density on light colored soils. The near infrared dye layer is the most valuable in canopy density determinations.

The Impact of Wet Soil and Canopy Temperatures on Daytime Boundary-Layer Growth.

NASA Astrophysics Data System (ADS)

Segal, M.; Garratt, J. R.; Kallos, G.; Pielke, R. A.

1989-12-01

The impact of very wet soil and canopy temperatures on the surface sensible heat flux, and on related daytime boundary-layer properties is evaluated. For very wet soils, two winter situations are considered, related to significant changes in soil surface temperature: (1) due to weather perturbations at a given location, and (2) due to the climatological north-south temperature gradient. Analyses and scaling of the various boundary-layer properties, and soil surface fluxes affecting the sensible beat flux, have been made; related evaluations show that changes in the sensible heat flux at a given location by a factor of 2 to 3 due to temperature changes related to weather perturbations is not uncommon. These changes result in significant alterations in the boundary-layer depth; in the atmospheric boundary-layer warming; and in the break-up time of the nocturnal surface temperature inversion. Investigation of the impact of the winter latitudinal temperature gradient on the above characteristics indicated that the relative increase in very wet soil sensible heat flux, due to the climatological reduction in the surface temperature in northern latitudes, moderates to some extent its reduction due to the corresponding decrease in solar radiation. Numerical model simulations confirmed these analytical evaluations.In addition, the impact of synoptic temperature perturbations during the transition seasons (fall and spring) on canopy sensible heal fluxes, and the related boundary-layer characteristics mentioned above, was evaluated. Analogous features to those found for very wet soil surfaces occurred also for the canopy situations. Likewise, evaluations were also carried out to explore the impact of high midlatitude foreste areas on the boundary-layer characteristics during the winter as compared to those during the summer. Similar impacts were found in both seasons, regardless of the substantial difference in the daily total solar radiation.

Improving photosynthetic efficiency to address food security in the 21st century: Strategies for a more efficient crop canopy

NASA Astrophysics Data System (ADS)

VanLoocke, A. D.; Slattery, R.; Bernacchi, C.; Zhu, X.; Ort, D. R.

2013-12-01

Global food production will need to increase by approximately 70% by mid-century to meet the caloric and nutritional demand of population and economic growth. Achieving this goal will require successfully implementing a wide range of strategies, spanning the social and physical sciences. Here we will present opportunities for improving crop production through increasing photosynthetic rates for a crop canopy that do not require additional agronomic inputs. We will focus on a specific strategy related optimizing the distribution of light within a crop canopy because it is a possible way to improve canopy photosynthesis in crops that form dense canopies, such as soybean, by increasing the transmission of light within a canopy via reduced chlorophyll content. We hypothesized that if decreasing chlorophyll content in soybean leaves will result in greater light penetration into the canopy then this will enhance canopy photosynthesis and improve yields. In addition, if current chlorophyll content in soybean results in excess light absorption, then decreasing chlorophyll content will result in decreased photoprotection that results in the suppression of upper canopy photosynthesis associated with super-optimal light. These hypotheses were tested in 2012 and 2013 in the field on the soybean cultivar 'Clark' (WT) and a nearly isogenic chlorophyll-b deficient mutant (Y11y11). Throughout the season, profiles of light sensors measured incident and reflected light intensity at the canopy surface as well as light levels at ten heights within the canopy. Analyses of these data indicated greater reflectivity, transmissivity and within-canopy light levels for the Y11y11 canopy relative to WT especially in the top half of the canopy. A Gas exchange method was used to determine photosynthetic capacity and suppression high light levels. Daily integrals of leaf-level photosynthesis in sun leaves were greater in Y11y11 compared to WT at several times during the growing season and photoprotection in high light was greater in the WT compared to the chlorophyll mutant. However, despite greater photosynthetic rates and lower levels of photoprotection in the upper canopy of the mutants, seed yields did not increase with reduced chlorophyll content in 2012. The 2013 field season is currently underway with the aim of determining what factors, including possible side effects of the higher chlorophyll a/b ratio, limit the translation of greater photosynthesis at the top of the canopy into increased yield. The presentation will conclude with a discussion of future avenues to be pursued with regards to improving photosynthesis by reducing chlorophyll in a more targeted manner that may outperform the current generation of plants study in this experiment.

Random forests and stochastic gradient boosting for predicting tree canopy cover: Comparing tuning processes and model performance

Treesearch

Elizabeth A. Freeman; Gretchen G. Moisen; John W. Coulston; Barry T. (Ty) Wilson

2015-01-01

As part of the development of the 2011 National Land Cover Database (NLCD) tree canopy cover layer, a pilot project was launched to test the use of high-resolution photography coupled with extensive ancillary data to map the distribution of tree canopy cover over four study regions in the conterminous US. Two stochastic modeling techniques, random forests (RF...

Turbulent transport and chemistry of isoprene and monoterpenes within and above tropical forest canopies

NASA Astrophysics Data System (ADS)

Gerken, T.; Chamecki, M.; Fuentes, J. D.; Stoy, P. C.; Trowbridge, A.; Wei, D.

2016-12-01

The Amazon rainforest and other rainforests emit large quantities of biogenic volatile organic compounds (BVOCs), including isoprene and monoterpenes, which react with and produce atmospheric oxidants such as ozone and the hydroxyl radical. Some of the resulting reaction products condense to form secondary organic aerosols, which due to the typically clean tropical air can make up a large portion of the total atmospheric aerosols and may thus impact cloud development and regional climate. To better understand the role of tropical forests on cloud development and climate, it is necessary to quantify not only BVOC emissions, but also turbulent transport and the resulting atmospheric chemistry within both the forest canopy and atmospheric boundary-layer. To date, most research has ignored within-canopy chemical processes that are typically not resolved in regional models that treat the forest as a lower boundary condition. We use canopy-resolving Large Eddy Simulation (LES) to study the role of turbulence and chemistry in the isoprene lifetime under conditions observed during a 2014 field campaign in central Amazonia. The LES includes a simple chemical mechanism for the oxidation of isoprene and aggregated monoterpenes (34 reactions), which we use to quantify the impact of within-canopy and boundary-layer processes on the transport and air chemistry of isoprene, monoterpenes, and primary reaction products on their export at the top of the boundary layer. LES results show air parcel residence times in the dense Amazon rainforest, which govern the time available for in-canopy reactions, to range from a few seconds near the canopy top to 30 minutes near the ground. Such residence times are comparable to chemical lifetimes of many reactive species and the convective eddy turnover timescale. Additionally, monoterpene oxidation with ambient ozone levels can increase within-canopy hydroxyl radical concentrations from 5 x 104 to 3 x 105 radicals cm-3, thus greatly increasing the oxidative capacity of the near surface air; within-canopy oxidation is significant for isoprene (5%) and monoterpene chemistry (25%). Results demonstrate that monoterpene chemistry - in addition to isoprene chemistry - needs to be considered when investigating the role of BVOCs to surface-atmosphere interactions in tropical rainforests.

Testing the relative contribution of positive and negative interactions in rocky intertidal communities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bertness, M.D.; Leonard, G.H.; Levine, J.M.

In contrast to many other biotic forces, such as competition and predation, the role played by habitat modification by plants and sessile animals in natural communities has not been given the experimental attention it deserves. To test the hypothesis that habitat modification by seaweed canopies can have direct positive effects on rocky intertidal communities, the authors quantified habitat amelioration by Ascophyllum nodosum canopies and its consequences on understory organisms in the Gulf of Maine, USA. At the upper and lower elevational borders of the algal canopy, the authors examined the recruitment, growth, and survivorship of common benthic organisms in canopymore » removal, and shaded canopy removal plots intended to mimic canopy habitat modifications. The algal canopy greatly reduced potential physical stresses, particularly at high tidal heights. Maximum daily rock temperatures were 5--10 C lower and evaporative water loss was in order of magnitude less under the canopy than in canopy removal plots. The response of understory organisms to canopy removal, however, was species specific and somewhat idiosyncratic. Nonetheless, in general, at the high intertidal border of the canopy the recruitment, growth, and survival of understory organisms were enhanced by the canopy, whereas at the low intertidal border canopy effects were negative or neutral. nearly half of the interactions the authors studied were positive in the high zone.« less

Algorithm for retrieving vegetative canopy and leaf parameters from multi- and hyperspectral imagery

NASA Astrophysics Data System (ADS)

Borel, Christoph

2009-05-01

In recent years hyper-spectral data has been used to retrieve information about vegetative canopies such as leaf area index and canopy water content. For the environmental scientist these two parameters are valuable, but there is potentially more information to be gained as high spatial resolution data becomes available. We developed an Amoeba (Nelder-Mead or Simplex) based program to invert a vegetative canopy radiosity model coupled with a leaf (PROSPECT5) reflectance model and modeled for the background reflectance (e.g. soil, water, leaf litter) to a measured reflectance spectrum. The PROSPECT5 leaf model has five parameters: leaf structure parameter Nstru, chlorophyll a+b concentration Cab, carotenoids content Car, equivalent water thickness Cw and dry matter content Cm. The canopy model has two parameters: total leaf area index (LAI) and number of layers. The background reflectance model is either a single reflectance spectrum from a spectral library() derived from a bare area pixel on an image or a linear mixture of soil spectra. We summarize the radiosity model of a layered canopy and give references to the leaf/needle models. The method is then tested on simulated and measured data. We investigate the uniqueness, limitations and accuracy of the retrieved parameters on canopy parameters (low, medium and high leaf area index) spectral resolution (32 to 211 band hyperspectral), sensor noise and initial conditions.

Environment vs. Plant Ontogeny: Arthropod Herbivory Patterns on European Beech Leaves along the Vertical Gradient of Temperate Forests in Central Germany

PubMed Central

Mantilla-Contreras, Jasmin

2018-01-01

Environmental and leaf trait effects on herbivory are supposed to vary among different feeding guilds. Herbivores also show variability in their preferences for plant ontogenetic stages. Along the vertical forest gradient, environmental conditions change, and trees represent juvenile and adult individuals in the understorey and canopy, respectively. This study was conducted in ten forests sites in Central Germany for the enrichment of canopy research in temperate forests. Arthropod herbivory of different feeding traces was surveyed on leaves of Fagus sylvatica Linnaeus (European beech; Fagaceae) in three strata. Effects of microclimate, leaf traits, and plant ontogenetic stage were analyzed as determining parameters for herbivory. The highest herbivory was caused by exophagous feeding traces. Herbivore attack levels varied along the vertical forest gradient for most feeding traces with distinct patterns. If differences of herbivory levels were present, they only occurred between juvenile and adult F. sylvatica individuals, but not between the lower and upper canopy. In contrast, differences of microclimate and important leaf traits were present between the lower and upper canopy. In conclusion, the plant ontogenetic stage had a stronger effect on herbivory than microclimate or leaf traits along the vertical forest gradient. PMID:29373542

Influence of Acacia trees on soil nutrient levels in arid lands

NASA Astrophysics Data System (ADS)

De Boever, Maarten; Gabriels, Donald; Ouessar, Mohamed; Cornelis, Wim

2014-05-01

The potential of scattered trees as keystone structures in restoring degraded environments is gaining importance. Scattered trees have strong influence on their abiotic environment, mainly causing changes in microclimate, water budget and soil properties. They often function as 'nursing trees', facilitating the recruitment of other plants. Acacia raddiana is such a keystone species which persists on the edge of the Sahara desert. The study was conducted in a forest-steppe ecosystem in central Tunisia where several reforestation campaigns with Acacia took place. To indentify the impact of those trees on soil nutrients, changes in nutrient levels under scattered trees of three age stages were examined for the upper soil layer (0-10 cm) at five microsites with increasing distance from the trunk. In addition, changes in soil nutrient levels with depth underneath and outside the canopy were determined for the 0-30 cm soil layer. Higher concentrations of organic matter (OM) were found along the gradient from underneath to outside the canopy for large trees compared to medium and small trees, especially at microsites close to the trunk. Levels of soluble K, electrical conductivity (EC), available P, OM, total C and N decreased whereas pH and levels of soluble Mg increased with increasing distance from tree. Levels of soluble Ca and Na remained unchanged along the gradient. At the microsite closest to the trunk a significant decrease in levels of soluble K, EC, OM, available P, total C and N, while a significant increase in pH was found with increasing depth. The concentration of other nutrients remained unchanged or declined not differently underneath compared to outside the canopy with increasing depth. Differences in nutrient levels were largely driven by greater inputs of organic matter under trees. Hence, Acacia trees can affect the productivity and reproduction of understory species with the latter in term an important source of organic matter. This positive feedback mechanism is of crucial importance for soil nutrient conservation and the restoration of degraded arid environments.

Detection of upward and downward Solar-induced chlorophyll fluorescence emissions at the forest floor in a cool-temperate deciduous broadleaf forest in Japan

NASA Astrophysics Data System (ADS)

Kato, T.; Tsujimoto, K.; Nasahara, K. N.; Akitsu, T.; Murayama, S.; Noda, H.; Muraoka, H.

2016-12-01

Strong representation of Sun-Induced Fluorescence (SIF) for the ecosystem-level photosynthesis activity has been confirmed by satellite studies [Frankenberg et al., 2011; Joiner et al., 2013] and by field studies [Porcar-Castell, 2011, Yang et al., 2015]. However, the lack of taking care of SIF emission below the tree canopy top may underestimate the contribution of sub-canopy and the understory species to total ecosystem CO2dynamics. To examine the potential contribution of SIF emission from lower part of tree ecosystem to total ecosystem SIF emission, the downward SIF from tree canopy and upward SIF from understory were calculated from the spectrum data in a cool temperate forest in in central Japan (36°08'N, 137°25'E, 1420 masl) as well as the upward SIF from canopy top, and the fractional ratios among them are compared on half-hourly and daily bases from 2006 to 2007. The top canopy is dominated by Oak and Birches, and the sub-canopy layer and shrub layers are dominated by Acer, Hydrangea and Viburnum species. The understory is dominated by an evergreen dwarf bamboo Sasa senanensis, and covered partially by the seedlings of oak and maple, and herbaceous species [Muraoka and Koizumi, 2005]. The SIF was estimated from the spectrums of downward and upward irradiances measured at two heights of 18m and 2m above ground by HemiSpherical Spectro-Radiometer, consisting of the spectroradiometer (MS700, Eko inc., Tokyo, Japan) with the FWHM of 10 nm and wavelength interval of 3.3 nm. The SIF around 760nm (O2-A band) was calculated according to the Fraunhofer Line Depth principle with additional arrangements. Our preliminary results show that the SIF emission intensity was kept in the order as canopy upward > canopy downward > understory upward for most of growing season, except for short spring time between snow melt and canopy greening because of the evergreen Sasa bamboo grass at the forest floor. On the other hand, the relative intensities among three SIF emissions seem to change diurnally and seasonally. The temporal changes in these relative SIF emissions would be showed to understand the contributions of ecosystem vertical layers to total SIF emissions, only top layer SIF emission of which is considered by satellites and field observations in previous studies, and to ecosystem photosynthesis (GPP) in this presentation.

Reflectance of a vegetation canopy using the Adding method

NASA Technical Reports Server (NTRS)

Cooper, K.; Smith, J. A.; Pitts, D.

1982-01-01

A modified vegetation reflectance model based on the Adding method is presented as a means to measure the interaction of shortwave radiation within a vegetation canopy. The canopy is conceptualized with reflecting and transmitting leaf facets, with the leaf orientations described by a leaf slope distribution, thereby yielding scattering matrices for canopy layers. The model predictions, when compared with ground-truth measurements, show good agreement except at visible wavelengths, where overestimations are observed. Conditions under which the model satisfies the reciprocity theorem are defined. Extension of the model by including azimuth is indicated.

Hydrology, vegetation, and soils of riverine and tidal floodplain forests of the lower Suwannee River, Florida, and potential impacts of flow reductions

USGS Publications Warehouse

Light, Helen M.; Darst, Melanie R.; Lewis, Lori J.; Howell, David A.

2002-01-01

A study relating hydrologic conditions, soils, and vegetation of floodplain forests to river flow was conducted in the lower Suwannee River, Florida, from 1996 to 2000. The study was done by the U.S. Geological Survey in cooperation with the Suwannee River Water Management District to help determine the minimum flows and levels required for wetlands protection. The study area included forests within the 10-year floodplain of the Suwannee River from its confluence with the Santa Fe River to the tree line (lower limit of forests) near the Gulf of Mexico, and covered 18,600 hectares (ha) of forests, 75 percent of which were wetlands and 25 percent uplands. The floodplain was divided into three reaches, riverine, upper tidal, and lower tidal, based on changes in hydrology, vegetation, and soils with proximity to the coast. The Suwannee River is the second largest river in Florida in terms of average discharge. Median flow at the confluence of the Suwannee and Santa Fe Rivers is approximately 181 cubic meters per second (m3/s) or 6,480 cubic feet per second (ft3/s) (1933-99). At the upper end of the riverine reach, river stages are unaffected by tides and have a typical annual range of 4.1 meters (m). Tides affect river stages at low and medium flows in the upper tidal reach, and at all flows in the lower tidal reach. Median tidal range at the mouth of the Suwannee River is about 1 m. Salinity of river water in the lower tidal reach increases with decreasing flow and proximity to the Gulf of Mexico. Vertically averaged salinity in the river near the tree line is typically about 5 parts per thousand at medium flow. Land-surface elevation and topographic relief in the floodplain decrease with proximity to the coast. Elevations range from 4.1 to 7.3 m above sea level at the most upstream riverine transect and from 0.3 to 1.3 m above sea level on lower tidal transects. Surface soils in the riverine reach are predominantly mineral and dry soon after floods recede except in swamps. Surface soils in upper and lower tidal reaches are predominantly organic, saturated mucks. In the downstream part of the lower tidal reach, conductivities of surface soils are high enough (greater than 4 milli-mhos per centimeter) to exclude many tree species that are intolerant of salinity. Species richness of canopy and subcanopy plants in wetland forests in the lower Suwannee River is high compared to other river floodplains in North America. A total of 77 tree, shrub, and woody vine species were identified in the canopy and subcanopy of floodplain wetland forests (n = 8,376). Fourteen specific forest types were mapped using digitized aerial photographs, defined from vegetative sampling, and described in terms of plant species composition. For discussion purposes, some specific wetland types were combined, resulting in three general wetland forest types for each reach. Riverine high bottomland hardwoods have higher canopy species richness than all other forest types (40-42 species), with Quercus virginiana the most important canopy tree by basal area. The canopy composition of riverine low bottomland hardwoods is dominated by five species with Quercus laurifolia the most important by basal area. Riverine swamps occur in the lowest and wettest areas with Taxodium distichum the most important canopy species by basal area. Upper tidal bottomland hardwoods are differentiated from riverine forests by the presence of Sabal palmetto in the canopy. Upper tidal mixed forests and swamps are differentiated from riverine forests, in part, by the presence of Fraxinus profunda in the canopy. Nyssa aquatica, the most important canopy species by basal area in upper tidal swamps, is absent from most forests in the lower tidal reach where its distribution is probably restricted by salinity. Hydric hammocks, a wetland type that is rare outside of Florida, are found in the lower tidal reach and are flooded every 1-2 years by either storm surge or river floods. Lowe

Observations of the scale-dependent turbulence and evaluation of the flux-gradient relationship for sensible heat for a closed Douglas-Fir canopy in very weak wind conditions

DOE PAGES

Vickers, D.; Thomas, C.

2014-05-13

Observations of the scale-dependent turbulent fluxes and variances above, within and beneath a tall closed Douglas-Fir canopy in very weak winds are examined. The daytime subcanopy vertical velocity spectra exhibit a double-peak structure with peaks at time scales of 0.8 s and 51.2 s. A double-peak structure is also observed in the daytime subcanopy heat flux cospectra. The daytime momentum flux cospectra inside the canopy and in the subcanopy are characterized by a relatively large cross-wind component, likely due to the extremely light and variable winds, such that the definition of a mean wind direction, and subsequent partitioning of themore » momentum flux into along- and cross-wind components, has little physical meaning. Positive values of both momentum flux components in the subcanopy contribute to upward transfer of momentum, consistent with the observed mean wind speed profile. In the canopy at night at the smallest resolved scales, we find relatively large momentum fluxes (compared to at larger scales), and increasing vertical velocity variance with decreasing time scale, consistent with very small eddies likely generated by wake shedding from the canopy elements that transport momentum but not heat. We find unusually large values of the velocity aspect ratio within the canopy, consistent with enhanced suppression of the horizontal wind components compared to the vertical by the canopy. The flux-gradient approach for sensible heat flux is found to be valid for the subcanopy and above-canopy layers when considered separately; however, single source approaches that ignore the canopy fail because they make the heat flux appear to be counter-gradient when in fact it is aligned with the local temperature gradient in both the subcanopy and above-canopy layers. Modeled sensible heat fluxes above dark warm closed canopies are likely underestimated using typical values of the Stanton number.« less

Observations of the scale-dependent turbulence and evaluation of the flux-gradient relationship for sensible heat for a closed Douglas-Fir canopy in very weak wind conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vickers, D.; Thomas, C.

Observations of the scale-dependent turbulent fluxes and variances above, within and beneath a tall closed Douglas-Fir canopy in very weak winds are examined. The daytime subcanopy vertical velocity spectra exhibit a double-peak structure with peaks at time scales of 0.8 s and 51.2 s. A double-peak structure is also observed in the daytime subcanopy heat flux cospectra. The daytime momentum flux cospectra inside the canopy and in the subcanopy are characterized by a relatively large cross-wind component, likely due to the extremely light and variable winds, such that the definition of a mean wind direction, and subsequent partitioning of themore » momentum flux into along- and cross-wind components, has little physical meaning. Positive values of both momentum flux components in the subcanopy contribute to upward transfer of momentum, consistent with the observed mean wind speed profile. In the canopy at night at the smallest resolved scales, we find relatively large momentum fluxes (compared to at larger scales), and increasing vertical velocity variance with decreasing time scale, consistent with very small eddies likely generated by wake shedding from the canopy elements that transport momentum but not heat. We find unusually large values of the velocity aspect ratio within the canopy, consistent with enhanced suppression of the horizontal wind components compared to the vertical by the canopy. The flux-gradient approach for sensible heat flux is found to be valid for the subcanopy and above-canopy layers when considered separately; however, single source approaches that ignore the canopy fail because they make the heat flux appear to be counter-gradient when in fact it is aligned with the local temperature gradient in both the subcanopy and above-canopy layers. Modeled sensible heat fluxes above dark warm closed canopies are likely underestimated using typical values of the Stanton number.« less

Large-Eddy Simulation Comparison of Neutral Flow Over a Canopy: Sensitivities to Physical and Numerical Conditions, and Similarity to Other Representations

NASA Astrophysics Data System (ADS)

Ouwersloot, H. G.; Moene, A. F.; Attema, J. J.; de Arellano, J. Vilà-Guerau

2017-01-01

The representation of a neutral atmospheric flow over roughness elements simulating a vegetation canopy is compared between two large-eddy simulation models, wind-tunnel data and recently updated empirical flux-gradient relationships. Special attention is devoted to the dynamics in the roughness sublayer above the canopy layer, where turbulence is most intense. By demonstrating that the flow properties are consistent across these different approaches, confidence in the individual independent representations is bolstered. Systematic sensitivity analyses with the Dutch Atmospheric Large-Eddy Simulation model show that the transition in the one-sided plant-area density from the canopy layer to unobstructed air potentially alters the flow in the canopy and roughness sublayer. Anomalously induced fluctuations can be fully suppressed by spreading the transition over four steps. Finer vertical resolutions only serve to reduce the magnitude of these fluctuations, but do not prevent them. To capture the general dynamics of the flow, a resolution of 10 % of the canopy height is found to suffice, while a finer resolution still improves the representation of the turbulent kinetic energy. Finally, quadrant analyses indicate that momentum transport is dominated by the mean velocity components within each quadrant. Consequently, a mass-flux approach can be applied to represent the momentum flux.

Characterization of vertical mixing in oscillatory vegetated flows

NASA Astrophysics Data System (ADS)

Abdolahpour, M.; Ghisalberti, M.; Lavery, P.; McMahon, K.

2016-02-01

Seagrass meadows are primary producers that provide important ecosystem services, such as improved water quality, sediment stabilisation and trapping and recycling of nutrients. Most of these ecological services are strongly influenced by the vertical exchange of water across the canopy-water interface. That is, vertical mixing is the main hydrodynamic process governing the large-scale ecological and environmental impact of seagrass meadows. The majority of studies into mixing in vegetated flows have focused on steady flow environments whereas many coastal canopies are subjected to oscillatory flows driven by surface waves. It is known that the rate of mass transfer will vary greatly between unidirectional and oscillatory flows, necessitating a specific investigation of mixing in oscillatory canopy flows. In this study, we conducted an extensive laboratory investigation to characterise the rate of vertical mixing through a vertical turbulent diffusivity (Dt,z). This has been done through gauging the evolution of vertical profiles of concentration (C) of a dye sheet injected into a wave-canopy flow. Instantaneous measurement of the variance of the vertical concentration distribution ( allowed the estimation of a vertical turbulent diffusivity (). Two types of model canopies, rigid and flexible, with identical heights and frontal areas, were subjected to a wide and realistic range of wave height and period. The results showed two important mechanisms that dominate vertical mixing under different conditions: a shear layer that forms at the top of the canopy and wake turbulence generated by the stems. By allowing a coupled contribution of wake and shear layer mixing, we present a relationship that can be used to predict the rate of vertical mixing in coastal canopies. The results further showed that the rate of vertical mixing within flexible vegetation was always lower than the corresponding rigid canopy, confirming the impact of plant flexibility on canopy-flow interactions.

Modeling Water and Nutrient Transport through the Soil-Root-Canopy Continuum: Explicitly Linking the Below- and Above-Ground Processes

NASA Astrophysics Data System (ADS)

Kumar, P.; Quijano, J. C.; Drewry, D.

2010-12-01

Vegetation roots provide a fundamental link between the below ground water and nutrient dynamics and above ground canopy processes such as photosynthesis, evapotranspiration and energy balance. The “hydraulic architecture” of roots, consisting of the structural organization of the root system and the flow properties of the conduits (xylem) as well as interfaces with the soil and the above ground canopy, affect stomatal conductance thereby directly linking them to the transpiration. Roots serve as preferential pathways for the movement of moisture from wet to dry soil layers during the night, both from upper soil layer to deeper layers during the wet season (‘hydraulic descent’) and vice-versa (‘hydraulic lift’) as determined by the moisture gradients. The conductivities of transport through the root system are significantly, often orders of magnitude, larger than that of the surrounding soil resulting in movement of soil-moisture at rates that are substantially larger than that through the soil. This phenomenon is called hydraulic redistribution (HR). The ability of the deep-rooted vegetation to “bank” the water through hydraulic descent during wet periods for utilization during dry periods provides them with a competitive advantage. However, during periods of hydraulic lift these deep-rooted trees may facilitate the growth of understory vegetation where the understory scavenges the hydraulically lifted soil water. In other words, understory vegetation with relatively shallow root systems have access to the banked deep-water reservoir. These inter-dependent root systems have a significant influence on water cycle and ecosystem productivity. HR induced available moisture may support rhizosphere microbial and mycorrhizal fungi activities and enable utilization of heterogeneously distributed water and nutrient resources To capture this complex inter-dependent nutrient and water transport through the soil-root-canopy continuum we present modeling results using coupled partial differential equations of transport in soils and roots along with that for nutrient dynamics. We study the feedbkack of HR on the dynamics of water and nitrogen cycling in the soil and how these dynamics influence root water and nitrogen uptake and consequently carbon assimilation by the canopy. The forcing data is obtained from the Ameriflux Tower located in Blodgett Forest, Sierra Nevada, California. We consider single-species (Ponderosa Pine) and multi-species (overstory Ponderosa Pine and understory shrubs) interaction. When single species is considered, the near surface soil-moisture available from HR during dry summer season is an important source of evaporation and contributes significantly to the total ET flux. However, when multi-species interactions are taken into account, the soil-water from the HR becomes an important source of transpiration from the understory. The results also show that passive plant nitrogen uptake is higher when HR is present and it is critical for sustaining expected rates of carbon assimilation.

Persistent effects of a severe drought on Amazonian forest canopy.

PubMed

Saatchi, Sassan; Asefi-Najafabady, Salvi; Malhi, Yadvinder; Aragão, Luiz E O C; Anderson, Liana O; Myneni, Ranga B; Nemani, Ramakrishna

2013-01-08

Recent Amazonian droughts have drawn attention to the vulnerability of tropical forests to climate perturbations. Satellite and in situ observations have shown an increase in fire occurrence during drought years and tree mortality following severe droughts, but to date there has been no assessment of long-term impacts of these droughts across landscapes in Amazonia. Here, we use satellite microwave observations of rainfall and canopy backscatter to show that more than 70 million hectares of forest in western Amazonia experienced a strong water deficit during the dry season of 2005 and a closely corresponding decline in canopy structure and moisture. Remarkably, and despite the gradual recovery in total rainfall in subsequent years, the decrease in canopy backscatter persisted until the next major drought, in 2010. The decline in backscatter is attributed to changes in structure and water content associated with the forest upper canopy. The persistence of low backscatter supports the slow recovery (>4 y) of forest canopy structure after the severe drought in 2005. The result suggests that the occurrence of droughts in Amazonia at 5-10 y frequency may lead to persistent alteration of the forest canopy.

Large-Eddy Simulation of Coherent Flow Structures within a Cubical Canopy

NASA Astrophysics Data System (ADS)

Inagaki, Atsushi; Castillo, Marieta Cristina L.; Yamashita, Yoshimi; Kanda, Manabu; Takimoto, Hiroshi

2012-02-01

Instantaneous flow structures "within" a cubical canopy are investigated via large-eddy simulation. The main topics of interest are, (1) large-scale coherent flow structures within a cubical canopy, (2) how the structures are coupled with the turbulent organized structures (TOS) above them, and (3) the classification and quantification of representative instantaneous flow patterns within a street canyon in relation to the coherent structures. We use a large numerical domain (2,560 m × 2,560 m × 1,710 m) with a fine spatial resolution (2.5 m), thereby simulating a complete daytime atmospheric boundary layer (ABL), as well as explicitly resolving a regular array of cubes (40 m in height) at the surface. A typical urban ABL is numerically modelled. In this situation, the constant heat supply from roof and floor surfaces sustains a convective mixed layer as a whole, but strong wind shear near the canopy top maintains the surface layer nearly neutral. The results reveal large coherent structures in both the velocity and temperature fields "within" the canopy layer. These structures are much larger than the cubes, and their shapes and locations are shown to be closely related to the TOS above them. We classify the instantaneous flow patterns in a cavity, specifically focusing on two characteristic flow patterns: flushing and cavity-eddy events. Flushing indicates a strong upward motion, while a cavity eddy is characterized by a dominant vortical motion within a single cavity. Flushing is clearly correlated with the TOS above, occurring frequently beneath low-momentum streaks. The instantaneous momentum and heat transport within and above a cavity due to flushing and cavity-eddy events are also quantified.

Ground-recorded sonic boom signatures of F-18 aircraft formation flight

NASA Technical Reports Server (NTRS)

Bahm, Catherine M.; Haering, Edward A., Jr.

1995-01-01

Two F-18 aircraft were flown, one above the other, in two formations, in order for the shock systems of the two aircraft to merge and propagate to the ground. The first formation had the canopy of the lower F-18 in the inlet shock of the upper F-18 (called inlet-canopy). The flight conditions were Mach 1.22 and an altitude of 23,500 ft. An array of five sonic boom recorders was used on the ground to record the sonic boom signatures. This paper describes the flight test technique and the ground level sonic boom signatures. The tail-canopy formation resulted in two, separated, N-wave signatures. Such signatures probably resulted from aircraft positioning error. The inlet-canopy formation yielded a single modified signature; two recorders measured an approximate flattop signature. Loudness calculations indicated that the single inlet-canopy signatures were quieter than the two, separated tail-canopy signatures. Significant loudness occurs after a sonic boom signature. Such loudness probably comes from the aircraft engines.

Mean and Turbulent Flow Statistics in a Trellised Agricultural Canopy

NASA Astrophysics Data System (ADS)

Miller, Nathan E.; Stoll, Rob; Mahaffee, Walter F.; Pardyjak, Eric R.

2017-10-01

Flow physics is investigated in a two-dimensional trellised agricultural canopy to examine that architecture's unique signature on turbulent transport. Analysis of meteorological data from an Oregon vineyard demonstrates that the canopy strongly influences the flow by channelling the mean flow into the vine-row direction regardless of the above-canopy wind direction. Additionally, other flow statistics in the canopy sub-layer show a dependance on the difference between the above-canopy wind direction and the vine-row direction. This includes an increase in the canopy displacement height and a decrease in the canopy-top shear length scale as the above-canopy flow rotates from row-parallel towards row-orthogonal. Distinct wind-direction-based variations are also observed in the components of the stress tensor, turbulent kinetic energy budget, and the energy spectra. Although spectral results suggest that sonic anemometry is insufficient for resolving all of the important scales of motion within the canopy, the energy spectra peaks still exhibit dependencies on the canopy and the wind direction. These variations demonstrate that the trellised-canopy's effect on the flow during periods when the flow is row-aligned is similar to that seen by sparse canopies, and during periods when the flow is row-orthogonal, the effect is similar to that seen by dense canopies.

Effects of soil and canopy characteristics on microwave backscattering of vegetation

NASA Technical Reports Server (NTRS)

Daughtry, C. S. T.; Ranson, K. J.

1991-01-01

A frequency modulated continuous wave C-band (4.8 GHz) scatterometer was mounted on an aerial lift truck and backscatter coefficients of corn were acquired as functions of polarizations, view angles, and row directions. As phytomass and green leaf area index increased, the backscatter also increased. Near anthesis when the canopies were fully developed, the major scattering elements were located in the upper 1 m of the 2.8 m tall canopy and little backscatter was measured below that level. C-band backscatter data could provide information to monitor vegetation at large view zenith angles.

Axial and radial water transport and internal water storage in tropical forest canopy trees.

Treesearch

Shelley A. James; Frederick C. Meinzer; Guillermo Goldstein; David Woodruff; Timothy Jones; Teresa Restom; Monica Mejia; Michael Clearwater; Paula Campanello

2003-01-01

Heat and stable isotope tracers were used to study axial and radial water transport in relation to sapwood anatomical characteristics and internal water storage in four canopy tree species of a seasonally dry tropical forest in Panama. Anatomical characteristics of the wood and radial profiles of sap flow were measured at the base, upper trunk, and crown of a single...

Taxonomy and remote sensing of leaf mass per area (LMA) in humid tropical forests

Treesearch

Gregory P. Asner; Roberta E. Martin; Raul Tupayachi; Ruth Emerson; Paola Martinez; Felipe Sinca; George V.N. Powell; S. Joseph Wright; Ariel E. Lugo

2011-01-01

Leaf mass per area (LMA) is a trait of central importance to plant physiology and ecosystem function, but LMA patterns in the upper canopies of humid tropical forests have proved elusive due to tall species and high diversity. We collected top-of-canopy leaf samples from 2873 individuals in 57 sites spread across the Neotropics, Australasia, and Caribbean and Pacific...

Seasonal bird use of canopy gaps in a bottomland forest

Treesearch

Liessa T. Bowen; Christopher E. Moorman; John C. Kilgo

2007-01-01

Bird use of small canopy gaps within mature forests has not been well studied, particularly across multiple seasons. We investigated seasonal differences in bird use of gap and forest habitat within a bottomland hardwood forest in the Upper Coastal Plain of South Carolina. Gaps were 0.13- to 0.5-ha, 7- to 8- year-old group-selection timber harvest openings. Our study...

Stand dynamics following gap-scale exogenous disturbance in a single cohort mixed species stand in Morgan County, Tennessee

Treesearch

Brian S. Hughett; Wayne K. Clatterbuck

2014-01-01

Differences in composition, structure, and growth under canopy gaps created by the mortality of a single stem were analyzed using analysis of variance under two scenarios, with stem removed or with stem left as a standing snag. There were no significant differences in composition and structure of large diameter residual stems within upper canopy strata. Some...

Highly reactive light-dependent monoterpenes in the Amazon

DOE PAGES

Jardine, A. B.; Jardine, K. J.; Fuentes, J. D.; ...

2015-03-06

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissionsmore » of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazon tree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.« less

Characterization and Modeling of Atmospheric Flow Within and Above Plant Canopies

NASA Astrophysics Data System (ADS)

Souza Freire Grion, Livia

The turbulent flow within and above plant canopies is responsible for the exchange of momentum, heat, gases and particles between vegetation and the atmosphere. Turbulence is also responsible for the mixing of air inside the canopy, playing an important role in chemical and biophysical processes occurring in the plants' environment. In the last fifty years, research has significantly advanced the understanding of and ability to model the flow field within and above the canopy, but important issues remain unsolved. In this work, we focus on (i) the estimation of turbulent mixing timescales within the canopy from field data; and (ii) the development of new computationally efficient modeling approaches for the coupled canopy-atmosphere flow field. The turbulent mixing timescale represents how quickly turbulence creates a well-mixed environment within the canopy. When the mixing timescale is much smaller than the timescale of other relevant processes (e.g. chemical reactions, deposition), the system can be assumed to be well-mixed and detailed modeling of turbulence is not critical to predict the system evolution. Conversely, if the mixing timescale is comparable or larger than the other timescales, turbulence becomes a controlling factor for the concentration of the variables involved; hence, turbulence needs to be taken into account when studying and modeling such processes. In this work, we used a combination of ozone concentration and high-frequency velocity data measured within and above the canopy in the Amazon rainforest to characterize turbulent mixing. The eddy diffusivity parameter (used as a proxy for mixing efficiency) was applied in a simple theoretical model of one-dimensional diffusion, providing an estimate of turbulent mixing timescales as a function of height within the canopy and time-of-day. Results showed that, during the day, the Amazon rainforest is characterized by well-mixed conditions with mixing timescales smaller than thirty minutes in the upper-half of the canopy, and partially mixed conditions in the lower half of the canopy. During the night, most of the canopy (except for the upper 20%) is either partially or poorly mixed, resulting in mixing timescales of up to several hours. For the specific case of ozone, the mixing timescales observed during the day are much lower than the chemical and deposition timescales, whereas chemical processes and turbulence have comparable timescales during the night. In addition, the high day-to-day variability in mixing conditions and the fast increase in mixing during the morning transition period indicate that turbulence within the canopy needs to be properly investigated and modeled in many studies involving plant-atmosphere interactions. Motivated by the findings described above, this work proposes and tests a new approach for modeling canopy flows. Typically, vertical profiles of flow statistics are needed to represent canopy-atmosphere exchanges in chemical and biophysical processes happening within the canopy. Current single-column models provide only steady-state (equilibrium) profiles, and rely on closure assumptions that do not represent the dominant non-local turbulent fluxes present in canopy flows. We overcome these issues by adapting the one-dimensional turbulent (ODT) model to represent atmospheric flows from the ground up to the top of the atmospheric boundary layer (ABL). The ODT model numerically resolves the one-dimensional diffusion equation along a vertical line (representing a horizontally homogeneous ABL column), and the presence of three-dimensional turbulence is added through the effect of stochastic eddies. Simulations of ABL without canopy were performed for different atmospheric stabilities and a diurnal cycle, to test the capabilities of this modeling approach in representing unsteady flows with strong non-local transport. In addition, four different types of canopies were simulated, one of them including the transport of scalar with a point source located inside the canopy. The comparison of all simulations with theory and field data provided satisfactory results. The main advantages of using ODT compared to typical 1D canopy-flow models are the ability to represent the coupled canopy-ABL flow with one single modeling approach, the presence of non-local turbulent fluxes, the ability to simulate transient conditions, the straightforward representation of multiple scalar fields, and the presence of only one adjustable parameter (as opposed to the several adjustable constants and boundary conditions needed for other modeling approaches). The results obtained with ODT as a stand-alone model motivated its use as a surface parameterization for Large-Eddy Simulation (LES). In this two-way coupling between LES and ODT, the former is used to simulate the ABL in a case where a canopy is present but cannot be resolved by the LES (i.e., the LES first vertical grid point is above the canopy). ODT is used to represent the flow field between the ground and the first LES grid point, including the region within and just above the canopy. In this work, we tested the ODT-LES model for three different types of canopies and obtained promising results. Although more work is needed in order to improve first and second-order statistics within the canopy (i.e. in the ODT domain), the results obtained for the flow statistics in the LES domain and for the third order statistics in the ODT domain demonstrate that the ODT-LES model is capable of capturing some important features of the canopy-atmosphere interaction. This new surface superparameterization approach using ODT provides a new alternative for simulations that require complex interactions between the flow field and near-surface processes (e.g. sand and snow drift, waves over water surfaces) and can potentially be extended to other large-scale models, such as mesoscale and global circulation models.

A new stomatal paradigm for earth system models? (Invited)

NASA Astrophysics Data System (ADS)

Bonan, G. B.; Williams, M. D.; Fisher, R. A.; Oleson, K. W.; Lombardozzi, D.

2013-12-01

The land component of climate, and now earth system, models has simulated stomatal conductance since the introduction in the mid-1980s of the so-called second generation models that explicitly represented plant canopies. These second generation models used the Jarvis-style stomatal conductance model, which empirically relates stomatal conductance to photosynthetically active radiation, temperature, vapor pressure deficit, CO2 concentration, and other factors. Subsequent models of stomatal conductance were developed from a more mechanistic understanding of stomatal physiology, particularly that stomata are regulated so as to maximize net CO2 assimilation (An) and minimize water loss during transpiration (E). This concept is embodied in the Ball-Berry stomatal conductance model, which relates stomatal conductance (gs) to net assimilation (An), scaled by the ratio of leaf surface relative humidity to leaf surface CO2 concentration, or the Leuning variant which replaces relative humidity with a vapor pressure deficit term. This coupled gs-An model has been widely used in climate and earth system models since the mid-1990s. An alternative approach models stomatal conductance by directly optimizing water use efficiency, defined as the ratio An/gs or An/E. Conceptual developments over the past several years have shown that the Ball-Berry style model can be derived from optimization theory. However, an explicit optimization model has not been tested in an earth system model. We compare the Ball-Berry model with an explicit optimization model, both implemented in a new plant canopy parameterization developed for the Community Land Model, the land component of the Community Earth System Model. The optimization model is from the Soil-Plant-Atmosphere (SPA) model, which integrates plant and soil hydraulics, carbon assimilation, and gas diffusion. The canopy parameterization is multi-layer and resolves profiles of radiation, temperature, vapor pressure, leaf water stress, stomatal conductance, and photosynthetic capacity within the canopy. Stomatal conductance for each layer is calculated so as to maximize carbon gain, within the limitations of plant water storage and soil-to-canopy water transport. An iterative procedure determines for every model timestep the maximum stomatal conductance for a canopy layer and the associated assimilation rate. We compare the Ball-Berry stomatal model and the SPA stomatal model within the multi-layer canopy parameterization. We use eddy covariance flux tower data for six sites (three deciduous broadleaf forest and three evergreen needleleaf forest) spanning a total of 51 site-years. The multi-layer canopy has improved simulation of gross primary production (GPP), evapotranspiration, and sensible heat flux compared with the most recent version of the Community Land Model (CLM4.5). The Ball-Berry and SPA stomatal models have prominent differences in simulated fluxes and compared with observations. This is most evident during drought.

Vertical heterogeneity in predation pressure in a temperate forest canopy

PubMed Central

Aikens, Kathleen R.; Buddle, Christopher M.

2013-01-01

The forest canopy offers a vertical gradient across which variation in predation pressure implies variation in refuge quality for arthropods. Direct and indirect experimental approaches were combined to assess whether canopy strata differ in ability to offer refuge to various arthropod groups. Vertical heterogeneity in impact of avian predators was quantified using exclosure cages in the understory, lower, mid, and upper canopy of a north-temperate deciduous forest near Montreal, Quebec. Bait trials were completed in the same strata to investigate the effects of invertebrate predators. Exclusion of birds yielded higher arthropod densities across all strata, although treatment effects were small for some taxa. Observed gradients in predation pressure were similar for both birds and invertebrate predators; the highest predation pressure was observed in the understory and decreased with height. Our findings support a view of the forest canopy that is heterogeneous with respect to arthropod refuge from natural enemies. PMID:24010017

Simulating ozone dry deposition at a boreal forest with a multi-layer canopy deposition model

NASA Astrophysics Data System (ADS)

Zhou, Putian; Ganzeveld, Laurens; Rannik, Üllar; Zhou, Luxi; Gierens, Rosa; Taipale, Ditte; Mammarella, Ivan; Boy, Michael

2017-01-01

A multi-layer ozone (O3) dry deposition model has been implemented into SOSAA (a model to Simulate the concentrations of Organic vapours, Sulphuric Acid and Aerosols) to improve the representation of O3 concentration and flux within and above the forest canopy in the planetary boundary layer. We aim to predict the O3 uptake by a boreal forest canopy under varying environmental conditions and analyse the influence of different factors on total O3 uptake by the canopy as well as the vertical distribution of deposition sinks inside the canopy. The newly implemented dry deposition model was validated by an extensive comparison of simulated and observed O3 turbulent fluxes and concentration profiles within and above the boreal forest canopy at SMEAR II (Station to Measure Ecosystem-Atmosphere Relations II) in Hyytiälä, Finland, in August 2010. In this model, the fraction of wet surface on vegetation leaves was parametrised according to the ambient relative humidity (RH). Model results showed that when RH was larger than 70 % the O3 uptake onto wet skin contributed ˜ 51 % to the total deposition during nighttime and ˜ 19 % during daytime. The overall contribution of soil uptake was estimated about 36 %. The contribution of sub-canopy deposition below 4.2 m was modelled to be ˜ 38 % of the total O3 deposition during daytime, which was similar to the contribution reported in previous studies. The chemical contribution to O3 removal was evaluated directly in the model simulations. According to the simulated averaged diurnal cycle the net chemical production of O3 compensated up to ˜ 4 % of dry deposition loss from about 06:00 to 15:00 LT. During nighttime, the net chemical loss of O3 further enhanced removal by dry deposition by a maximum ˜ 9 %. Thus the results indicated an overall relatively small contribution of airborne chemical processes to O3 removal at this site.

Forest Canopy Processes in a Regional Chemical Transport Model

NASA Astrophysics Data System (ADS)

Makar, Paul; Staebler, Ralf; Akingunola, Ayodeji; Zhang, Junhua; McLinden, Chris; Kharol, Shailesh; Moran, Michael; Robichaud, Alain; Zhang, Leiming; Stroud, Craig; Pabla, Balbir; Cheung, Philip

2016-04-01

Forest canopies have typically been absent or highly parameterized in regional chemical transport models. Some forest-related processes are often considered - for example, biogenic emissions from the forests are included as a flux lower boundary condition on vertical diffusion, as is deposition to vegetation. However, real forest canopies comprise a much more complicated set of processes, at scales below the "transport model-resolved scale" of vertical levels usually employed in regional transport models. Advective and diffusive transport within the forest canopy typically scale with the height of the canopy, and the former process tends to dominate over the latter. Emissions of biogenic hydrocarbons arise from the foliage, which may be located tens of metres above the surface, while emissions of biogenic nitric oxide from decaying plant matter are located at the surface - in contrast to the surface flux boundary condition usually employed in chemical transport models. Deposition, similarly, is usually parameterized as a flux boundary condition, but may be differentiated between fluxes to vegetation and fluxes to the surface when the canopy scale is considered. The chemical environment also changes within forest canopies: shading, temperature, and relativity humidity changes with height within the canopy may influence chemical reaction rates. These processes have been observed in a host of measurement studies, and have been simulated using site-specific one-dimensional forest canopy models. Their influence on regional scale chemistry has been unknown, until now. In this work, we describe the results of the first attempt to include complex canopy processes within a regional chemical transport model (GEM-MACH). The original model core was subdivided into "canopy" and "non-canopy" subdomains. In the former, three additional near-surface layers based on spatially and seasonally varying satellite-derived canopy height and leaf area index were added to the original model structure. Process methodology for deposition, biogenic emissions, shading, vertical diffusion, advection, chemical reactive environment and particle microphysics were modified to account for expected conditions within the forest canopy and the additional layers. The revised and original models were compared for a 10km resolution domain covering North America, for a one-month duration simulation. The canopy processes were found to have a very significant impact on model results. We will present a comparison to network observations which suggests that forest canopy processes may account for previously unexplained local and regional biases in model ozone predictions noted in GEM-MACH and other models. The impact of the canopy processes on NO2, PM2.5, and SO2 performance will also be presented and discussed.

A New Canopy Integration Factor

NASA Astrophysics Data System (ADS)

Badgley, G.; Anderegg, L. D. L.; Baker, I. T.; Berry, J. A.

2017-12-01

Ecosystem modelers have long debated how to best represent within-canopy heterogeneity. Can one big leaf represent the full range of canopy physiological responses? Or you need two leaves - sun and shade - to get things right? Is it sufficient to treat the canopy as a diffuse medium? Or would it be better to explicitly represent separate canopy layers? These are open questions that have been subject of an enormous amount of research and scrutiny. Yet regardless of how the canopy is represented, each model must grapple with correctly parameterizing its canopy in a way that properly translates leaf-level processes to the canopy and ecosystem scale. We present a new approach for integrating whole-canopy biochemistry by combining remote sensing with ecological theory. Using the Simple Biosphere model (SiB), we redefined how SiB scales photosynthetic processes from leaf-to-canopy as a function of satellite-derived measurements of solar-induced chlorophyll fluorescence (SIF). Across multiple long-term study sites, our approach improves the accuracy of daily modeled photosynthesis by as much as 25 percent. We share additional insights on how SIF might be more directly integrated into photosynthesis models, as well as present ideas for harnessing SIF to more accurately parameterize canopy biochemical variables.

Lidar observed seasonal variation of vertical canopy structure in the Amazon evergreen forests

NASA Astrophysics Data System (ADS)

Tang, H.; Dubayah, R.

2017-12-01

Both light and water are important environmental factors governing tree growth. Responses of tropical forests to their changes are complicated and can vary substantially across different spatial and temporal scales. Of particular interest is the dry-season greening-up of Amazon forests, a phenomenon undergoing considerable debates whether it is real or a "light illusion" caused by artifacts of passive optical remote sensing techniques. Here we analyze seasonal dynamic patterns of vertical canopy structure in the Amazon forests using lidar observations from NASA's Ice, Cloud, and and land Elevation Satellite (ICESat). We found that the net greening of canopy layer coincides with the wet-to-dry transition period, and its net browning occurs mostly at the late dry season. The understory also shows a seasonal cycle, but with an opposite variation to canopy and minimal correlation to seasonal variations in rainfall or radiation. Our results further suggest a potential interaction between canopy layers in the light regime that can optimize the growth of Amazon forests during the dry season. This light regime variability that exists in both spatial and temporal domains can better reveal the dry-season greening-up phenomenon, which appears less obvious when treating the Amazon forests as a whole.

Canopy volume removal from oil and gas development activity in the upper Susquehanna River basin in Pennsylvania and New York (USA): An assessment using lidar data

USGS Publications Warehouse

Young, John A.; Maloney, Kelly O.; Slonecker, Terry; Milheim, Lesley E.; Siripoonsup, David

2018-01-01

Oil and gas development is changing the landscape in many regions of the United States and globally. However, the nature, extent, and magnitude of landscape change and development, and precisely how this development compares to other ongoing land conversion (e.g. urban/sub-urban development, timber harvest) is not well understood. In this study, we examine land conversion from oil and gas infrastructure development in the upper Susquehanna River basin in Pennsylvania and New York, an area that has experienced much oil and gas development over the past 10 years. We quantified land conversion in terms of forest canopy geometric volume loss in contrast to previous studies that considered only areal impacts. For the first time in a study of this type, we use fine-scale lidar forest canopy geometric models to assess the volumetric change due to forest clearing from oil and gas development and contrast this land change to clear cut forest harvesting, and urban and suburban development. Results show that oil and gas infrastructure development removed a large volume of forest canopy from 2006 to 2013, and this removal spread over a large portion of the study area. Timber operations (clear cutting) on Pennsylvania State Forest lands removed a larger total volume of forest canopy during the same time period, but this canopy removal was concentrated in a smaller area. Results of our study point to the need to consider volumetric impacts of oil and gas development on ecosystems, and to place potential impacts in context with other ongoing land conversions.

ADVANCED URBANIZED METEOROLOGICAL MODELING AND AIR QUALITY SIMULATIONS WITH CMAQ AT NEIGHBORHOOD SCALES

EPA Science Inventory

We present results from a study testing the new boundary layer parameterization method, the canopy drag approach (DA) which is designed to explicitly simulate the effects of buildings, street and tree canopies on the dynamic, thermodynamic structure and dispersion fields in urban...

Air-Parcel Residence Times Within Forest Canopies

NASA Astrophysics Data System (ADS)

Gerken, Tobias; Chamecki, Marcelo; Fuentes, Jose D.

2017-10-01

We present a theoretical model, based on a simple model of turbulent diffusion and first-order chemical kinetics, to determine air-parcel residence times and the out-of-canopy export of reactive gases emitted within forest canopies under neutral conditions. Theoretical predictions of the air-parcel residence time are compared to values derived from large-eddy simulation for a range of canopy architectures and turbulence levels under neutral stratification. Median air-parcel residence times range from a few sec in the upper canopy to approximately 30 min near the ground and the distribution of residence times is skewed towards longer times in the lower canopy. While the predicted probability density functions from the theoretical model and large-eddy simulation are in good agreement with each other, the theoretical model requires only information on canopy height and eddy diffusivities inside the canopy. The eddy-diffusivity model developed additionally requires the friction velocity at canopy top and a parametrized profile of the standard deviation of vertical velocity. The theoretical model of air-parcel residence times is extended to include first-order chemical reactions over a range of of Damköhler numbers ( Da) characteristic of plant-emitted hydrocarbons. The resulting out-of-canopy export fractions range from near 1 for Da =10^{-3} to less than 0.3 at Da = 10. These results highlight the necessity for dense and tall forests to include the impacts of air-parcel residence times when calculating the out-of-canopy export fraction for reactive trace gases.

Response of giant sequoia canopy foliage to elevated concentrations of atmospheric ozone

Treesearch

Nancy Grulke; P.R. Miller; D. Scioli

1996-01-01

We examined the physiological response of foliage in the upper third of the canopy of 125-year-old giant sequoia (Sequoiadendron giganteum Buchholz.) trees to a 61-day exposure to 0.25x, 1x, 2x or 3x ambient ozone concentration. Four branch exposure chambers, one per ozone treatment, were installed on 1-m long secondary branches of each tree at a...

High but not dry: diverse epiphytic bromeliad adaptations to exposure within a seasonally dry tropical forest community.

PubMed

Reyes-García, C; Mejia-Chang, M; Griffiths, H

2012-02-01

• Vascular epiphytes have developed distinct lifeforms to maximize water uptake and storage, particularly when delivered as pulses of precipitation, dewfall or fog. The seasonally dry forest of Chamela, Mexico, has a community of epiphytic bromeliads with Crassulacean acid metabolism showing diverse morphologies and stratification within the canopy. We hypothesize that niche differentiation may be related to the capacity to use fog and dew effectively to perform photosynthesis and to maintain water status. • Four Tillandsia species with either 'tank' or 'atmospheric' lifeforms were studied using seasonal field data and glasshouse experimentation, and compared on the basis of water use, leaf water δ(18) O, photosynthetic and morphological traits. • The atmospheric species, Tillandsia eistetteri, with narrow leaves and the lowest succulence, was restricted to the upper canopy, but displayed the widest range of physiological responses to pulses of precipitation and fog, and was a fog-catching 'nebulophyte'. The other atmospheric species, Tillandsia intermedia, was highly succulent, restricted to the lower canopy and with a narrower range of physiological responses. Both upper canopy tank species relied on tank water and stomatal closure to avoid desiccation. • Niche differentiation was related to capacity for water storage, dependence on fog or dewfall and physiological plasticity. © 2011 The Authors. New Phytologist © 2011 New Phytologist Trust.

Effects of structural complexity on within-canopy light environments and leaf traits in a northern mixed deciduous forest

NASA Astrophysics Data System (ADS)

Fotis, A. T.; Curtis, P.

2016-12-01

Canopy structure influences forest productivity through its effects on the distribution of radiation and the light-induced changes in leaf physiological traits. Due to the difficulty of accessing and measuring forest canopies, few field-based studies have quantitatively linked these divergent scales of canopy functioning. The objective of our study was to investigate how canopy structure affects light profiles within a forest canopy and whether leaves of mature trees adjust morphologically and biochemically to the light environments characteristic of canopies with different structural complexity. We used a combination of light detection and ranging (LiDAR) data and hemispherical photographs to quantify canopy structure and light environments, respectively, and a telescoping pole to sample leaves. Leaf mass per area (LMA), nitrogen on an area basis (Narea) and chlorophyll on a mass basis (Chlmass) were measured in four co-dominant species (Acer rubrum, Fagus grandifolia, Pinus strobus and Quercus rubra) at different heights in plots with similar leaf area index (LAI) but contrasting canopy complexity (rugosity). We found that more complex canopies had greater porosity and reduced light variability in the midcanopy while total light interception was unchanged relative to less complex canopies. Leaves of F. grandifolia, Q. rubra, and P. strobus shifted towards sun-acclimation phenotypes with increasing canopy complexity while leaves of A. rubrum became more shade-acclimated (lower LMA) in the upper canopy of more complex stands, despite no differences in total light interception. Broadleaf species showed further acclimation by increasing Narea and reducing Chlmass as LMA increased, while P. strobus showed no change in Narea and Chlmass with increasing LMA. Our results provide new insight on how light distribution and leaf acclimation in mature trees might be altered when natural and anthropogenic disturbances cause structural changes in the canopy.

Characterizing Olive Grove Canopies by Means of Ground-Based Hemispherical Photography and Spaceborne RADAR Data

PubMed Central

Molina, Iñigo; Morillo, Carmen; García-Meléndez, Eduardo; Guadalupe, Rafael; Roman, Maria Isabel

2011-01-01

One of the main strengths of active microwave remote sensing, in relation to frequency, is its capacity to penetrate vegetation canopies and reach the ground surface, so that information can be drawn about the vegetation and hydrological properties of the soil surface. All this information is gathered in the so called backscattering coefficient (σ0). The subject of this research have been olive groves canopies, where which types of canopy biophysical variables can be derived by a specific optical sensor and then integrated into microwave scattering models has been investigated. This has been undertaken by means of hemispherical photographs and gap fraction procedures. Then, variables such as effective and true Leaf Area Indices have been estimated. Then, in order to characterize this kind of vegetation canopy, two models based on Radiative Transfer theory have been applied and analyzed. First, a generalized two layer geometry model made up of homogeneous layers of soil and vegetation has been considered. Then, a modified version of the Xu and Steven Water Cloud Model has been assessed integrating the canopy biophysical variables derived by the suggested optical procedure. The backscattering coefficients at various polarized channels have been acquired from RADARSAT 2 (C-band), with 38.5° incidence angle at the scene center. For the soil simulation, the best results have been reached using a Dubois scattering model and the VV polarized channel (r2 = 0.88). In turn, when effective LAI (LAIeff) has been taken into account, the parameters of the scattering canopy model are better estimated (r2 = 0.89). Additionally, an inversion procedure of the vegetation microwave model with the adjusted parameters has been undertaken, where the biophysical values of the canopy retrieved by this methodology fit properly with field measured values. PMID:22164028

Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction

PubMed Central

Burgess, Alexandra J.; Retkute, Renata; Herman, Tiara; Murchie, Erik H.

2017-01-01

The arrangement of leaf material is critical in determining the light environment, and subsequently the photosynthetic productivity of complex crop canopies. However, links between specific canopy architectural traits and photosynthetic productivity across a wide genetic background are poorly understood for field grown crops. The architecture of five genetically diverse rice varieties—four parental founders of a multi-parent advanced generation intercross (MAGIC) population plus a high yielding Philippine variety (IR64)—was captured at two different growth stages using a method for digital plant reconstruction based on stereocameras. Ray tracing was employed to explore the effects of canopy architecture on the resulting light environment in high-resolution, whilst gas exchange measurements were combined with an empirical model of photosynthesis to calculate an estimated carbon gain and total light interception. To further test the impact of different dynamic light patterns on photosynthetic properties, an empirical model of photosynthetic acclimation was employed to predict the optimal light-saturated photosynthesis rate (Pmax) throughout canopy depth, hypothesizing that light is the sole determinant of productivity in these conditions. First, we show that a plant type with steeper leaf angles allows more efficient penetration of light into lower canopy layers and this, in turn, leads to a greater photosynthetic potential. Second the predicted optimal Pmax responds in a manner that is consistent with fractional interception and leaf area index across this germplasm. However, measured Pmax, especially in lower layers, was consistently higher than the optimal Pmax indicating factors other than light determine photosynthesis profiles. Lastly, varieties with more upright architecture exhibit higher maximum quantum yield of photosynthesis indicating a canopy-level impact on photosynthetic efficiency. PMID:28567045

The photochemical reflectance index from directional cornfield reflectances: Observations and simulations

USDA-ARS?s Scientific Manuscript database

The two-layer Markov chain Analytical Canopy Reflectance Model (ACRM) was linked with in situ hyperspectral leaf optical properties to simulate the Photochemical Reflectance Index (PRI) for a corn crop canopy at three different growth stages. This is an extended study after a successful demonstratio...

EVALUATION OF FOREST CANOPY MODELS FOR ESTIMATING ISOPRENE EMISSIONS

EPA Science Inventory

During the summer of 1992, isoprene emissions were measured in a mixed deciduous forest near Oak Ridge, Tennessee. Measurements were aimed at the experimental scale-up of emissions from the leaf level to the forest canopy to the mixed layer. Results from the scale-up study are co...

The Effects of Land Surface Heating And Roughness Elements on the Structure and Scaling Laws of Atmospheric Boundary Layer Turbulence

NASA Astrophysics Data System (ADS)

Ghannam, Khaled

The atmospheric boundary-layer is the lowest 500-2000 m of the Earth's atmosphere where much of human life and ecosystem services reside. This layer responds to land surface (e.g. buoyancy and roughness elements) and slowly evolving free tropospheric (e.g. temperature and humidity lapse rates) conditions that arguably mediate and modulate biosphere-atmosphere interactions. Such response often results in spatially- and temporally-rich turbulence scales that continue to be the subject of inquiry given their significance to a plethora of applications in environmental sciences and engineering. The work here addresses key aspects of boundary layer turbulence with a focus on the role of roughness elements (vegetation canopies) and buoyancy (surface heating) in modifying the well-studied picture of shear-dominated wall-bounded turbulence. A combination of laboratory channel experiments, field experiments, and numerical simulations are used to explore three distinct aspects of boundary layer turbulence. These are: • The concept of ergodicity in turbulence statistics within canopies: It has been long-recognized that homogeneous and stationary turbulence is ergodic, but less is known about the effects of inhomogeneity introduced by the presence of canopies on the turbulence statistics. A high resolution (temporal and spatial) flume experiment is used here to test the convergence of the time statistics of turbulent scalar concentrations to their ensemble (spatio-temporal) counterpart. The findings indicate that within-canopy scalar statistics have a tendency to be ergodic, mostly in shallow layers (close to canopy top) where the sweeping flow events appear to randomize the statistics. Deeper layers within the canopy are dominated by low-dimensional (quasi-deterministic) von Karman vortices that tend to break ergodicity. • Scaling laws of turbulent velocity spectra and structure functions in near-surface atmospheric turbulence: the existence of a logarithmic scaling in the structure function of the longitudinal and vertical velocity components is examined using five experimental data sets that span the roughness sub-layer above vegetation canopies, the atmospheric surface-layer above a lake and a grass field, and an open channel experiment. The results indicate that close to the wall/surface, this scaling exists in the longitudinal velocity structure function only, with the vertical velocity counterpart exhibiting a much narrower extent of this range due to smaller separation of scales. Phenomenological aspects of the large-scale eddies show that the length scale formed by the friction velocity and energy dissipation acts as a dominant similarity length scale in collapsing experimental data at different heights, mainly due to the imbalance between local production and dissipation of turbulence kinetic energy. • Nonlocal heat transport in the convective atmospheric boundary-layer: Failure of the mean gradient-diffusion (K-theory) in the convective boundary-layer is explored. Using large eddy simulation runs for the atmospheric boundary layer spanning weakly to strongly convective conditions, a generic diagnostic framework that encodes the role of third-order moments in nonlocal heat transport is developed and tested. The premise is that these nonlocal effects are responsible for the inherent asymmetry in vertical transport, and hence the necessary non-Gaussian nature of the joint probability density function (JPDF) of vertical velocity and potential temperature must account for these effects. Conditional sampling (quadrant analysis) of this function and the imbalance between the flow mechanisms of ejections and sweeps are used to characterize this asymmetry, which is then linked to the third-order moments using a cumulant-discard method for the Gram-Charlier expansion of the JPDF. The connection between the ejection-sweep events and the third-order moments shows that the concepts of bottom-up/top-down diffusion, or updraft/downdraft models, are accounted for by various quadrants of this joint probability density function. To this end, future research directions that build upon this work are also discussed.

Forest-atmosphere BVOC exchange in diverse and structurally complex canopies: 1-D modeling of a mid-successional forest in northern Michigan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bryan, Alexander M.; Cheng, Susan J.; Ashworth, Kirsti

Foliar emissions of biogenic volatile organic compounds (BVOC)dimportant precursors of tropospheric ozone and secondary organic aerosolsdvary widely by vegetation type. Modeling studies to date typi-cally represent the canopy as a single dominant tree type or a blend of tree types, yet many forests are diverse with trees of varying height. To assess the sensitivity of biogenic emissions to tree height vari-ation, we compare two 1-D canopy model simulations in which BVOC emission potentials are homo-geneous or heterogeneous with canopy depth. The heterogeneous canopy emulates the mid-successional forest at the University of Michigan Biological Station (UMBS). In this case, high-isoprene-emitting fo-liagemore » (e.g., aspen and oak) is constrained to the upper canopy, where higher sunlight availability increases the light-dependent isoprene emission, leading to 34% more isoprene and its oxidation products as compared to the homogeneous simulation. Isoprene declines from aspen mortality are 10% larger when heterogeneity is considered. Overall, our results highlight the importance of adequately representing complexities of forest canopy structure when simulating light-dependent BVOC emissions and chemistry.« less

Persistent effects of a severe drought on Amazonian forest canopy

PubMed Central

Saatchi, Sassan; Asefi-Najafabady, Salvi; Malhi, Yadvinder; Aragão, Luiz E. O. C.; Anderson, Liana O.; Myneni, Ranga B.; Nemani, Ramakrishna

2013-01-01

Recent Amazonian droughts have drawn attention to the vulnerability of tropical forests to climate perturbations. Satellite and in situ observations have shown an increase in fire occurrence during drought years and tree mortality following severe droughts, but to date there has been no assessment of long-term impacts of these droughts across landscapes in Amazonia. Here, we use satellite microwave observations of rainfall and canopy backscatter to show that more than 70 million hectares of forest in western Amazonia experienced a strong water deficit during the dry season of 2005 and a closely corresponding decline in canopy structure and moisture. Remarkably, and despite the gradual recovery in total rainfall in subsequent years, the decrease in canopy backscatter persisted until the next major drought, in 2010. The decline in backscatter is attributed to changes in structure and water content associated with the forest upper canopy. The persistence of low backscatter supports the slow recovery (>4 y) of forest canopy structure after the severe drought in 2005. The result suggests that the occurrence of droughts in Amazonia at 5–10 y frequency may lead to persistent alteration of the forest canopy. PMID:23267086

Simple Forest Canopy Thermal Exitance Model

NASA Technical Reports Server (NTRS)

Smith J. A.; Goltz, S. M.

1999-01-01

We describe a model to calculate brightness temperature and surface energy balance for a forest canopy system. The model is an extension of an earlier vegetation only model by inclusion of a simple soil layer. The root mean square error in brightness temperature for a dense forest canopy was 2.5 C. Surface energy balance predictions were also in good agreement. The corresponding root mean square errors for net radiation, latent, and sensible heat were 38.9, 30.7, and 41.4 W/sq m respectively.

Foraging and nesting habitat of breeding male northern goshawks in the laurentian mixed forest province, Minnesota

USGS Publications Warehouse

Boal, C.W.; Andersen, D.E.; Kennedy, P.L.

2005-01-01

We used radiotelemetry to examine foraging habitat preferences of 17 breeding, male northern goshawks (Accipiter gentilis) in Minnesota from 1998-2000. We assessed habitat preference using radio relocation points and 50-m radius buffers of radio relocation points. Our data suggested that foraging male goshawks used early-successional upland conifer stands (???25 yrs old), early-successional upland deciduous stands (???50 yrs old), late-successional upland conifer stands (???50 yrs old), and late-successional upland deciduous stands (???50 yrs old) more frequently than expected based on the abundance of these vegetation types in the landscape. The 2 most available stand types, early-successional upland deciduous (<25 yrs old) and all ages of late-successional lowland conifer stands, were used less than expected by foraging goshawks. Late-successional lowland deciduous stands (???50 yrs old) were used in proportion to availability. Although analysis of relocation points suggested early-successional upland deciduous stands (25-49 yrs old) and late-successional upland conifer stands (???50 yrs old) were used in proportion to availability, analysis of buffers around relocation points indicated that these stand types were also used more than expected by foraging goshawks. Regardless of vegetation community type, stands used by goshawks were structurally similar with high canopy and understory stem densities, high canopy closure, substantial shrub cover, and large amounts of woody debris. Nest stands consisted of taller and larger diameter canopy trees and fewer understory trees than foraging stands, but stands were otherwise similar in structural features, suggesting goshawks used similar stands for nesting and foraging but that they tended to select the most mature stands for nesting. A commonality among nesting and foraging stands was the presence of open spaces between the canopy and understory foliage, and between understory and shrub layer foliage. In our study area, these spaces may have served as relatively unobstructed flight paths where foraging and nesting stands possessed stem densities at the upper end of that reported for goshawk habitat.

Variation in morphological and biochemical O3 injury attributes of mature Jeffrey pine within canopies and between microsites.

PubMed

Grulke, N E; Johnson, R; Monschein, S; Nikolova, P; Tausz, M

2003-09-01

Crown morphology and leaf tissue chemical and biochemical attributes associated with ozone (O3) injury were assessed in the lower, mid- and upper canopy of Jeffrey pine (Pinus jeffreyi Grev. & Balf.) growing in mesic and xeric microsites in Sequoia National Park, California. Microsites were designated mesic or xeric based on topography and bole growth in response to years of above-average precipitation. In mesic microsites, canopy response to O3 was characterized by thinner branches, earlier needle fall, less chlorotic leaf mottling, and lower foliar antioxidant capacity, especially of the aqueous fraction. In xeric microsites, canopy response to O3 was characterized by higher chlorotic leaf mottling, shorter needles, lower needle chlorophyll concentration, and greater foliar antioxidant capacity. Increased leaf chlorotic mottle in xeric microsites was related to drought stress and increased concurrent internal production of highly reactive oxygen species, and not necessarily to stomatal O3 uptake. Within-canopy position also influenced the expression of O3 injury in Jeffrey pine.

Diversity of Bats in Contrasting Habitats of Hulu Terengganu Dipterocarp Forest and Setiu Wetland BRIS Forest with a Note on Preliminary Study of Vertical Stratification of Pteropodid Bats.

PubMed

Pounsin, Grace; Wahab, Nur Syahirah; Roslan, Azuan; Zahidin, Muhamad Aidil; Pesiu, Elizabeth; Tamrin, Nur Aida Md; Abdullah, M T

2018-03-01

A study of the bat diversity was conducted in Hulu Terengganu dipterocarp forest and Setiu Wetland Beach Ridges Interspersed with Swales (BRIS) forest in Terengganu, to study the species diversity, composition and stratification of fruit bats from the understorey to the forest canopy. Mist nets were set up at the understorey, sub-canopy and canopy layer while harp traps were set up at the understorey layer. We recorded 170 individuals from six families' compromised 21 species from Hulu Terengganu dipterocarp forests and four species from Setiu Wetland BRIS forests throughout the sampling period. Megaerops ecaudatus and Cynopterus brachyotis were the most dominant species in Hulu Terengganu dipterocarp forest and Setiu Wetland BRIS forests. Our study also recorded two species with new distributional records for the east coast of Peninsular Malaysia, namely, Rhinolophus chiewkweeae and Chaerephon johorensis in Hulu Terengganu dipterocarp forests. Potential factors that might influence the results were in terms of the canopy covers, the structural complexity of canopy, food availability and spatial characteristics. This study was able to increase the knowledge on the species diversity and composition of bats in Hulu Terengganu dipterocarp forest and Setiu Wetland BRIS forest, thus, further aid in the effort of bat conservation in both areas.

A photosynthesis-based two-leaf canopy stomatal conductance model for meteorology and air quality modeling with WRF/CMAQ PX LSM

EPA Science Inventory

A coupled photosynthesis-stomatal conductance model with single-layer sunlit and shaded leaf canopy scaling is implemented and evaluated in a diagnostic box model with the Pleim-Xiu land surface model (PX LSM) and ozone deposition model components taken directly from the meteorol...

EFFECTS OF LEAF AREA PROFILES AND CANOPY STRATIFICATION ON SIMULATED ENERGY FLUXES: THE PROBLEM OF VERTICAL SPATIAL SCALE. (R827676)

EPA Science Inventory

We investigated the effects of the shape of leaf area profiles and the number of canopy layers on simulated sensible and latent heat fluxes using a gradient diffusion-based biometeorological model. Three research questions were addressed through simulation experiments: (1) Given ...

Canopy tree species determine herb layer biomass and species composition on a reclaimed mine spoil heap.

PubMed

Rawlik, Mateusz; Kasprowicz, Marek; Jagodziński, Andrzej M; Kaźmierowski, Cezary; Łukowiak, Remigiusz; Grzebisz, Witold

2018-09-01

According facilitative models of succession, trees are great forest ecosystem engineers. The strength of tree stand influences on habitat were tested in rather homogenous conditions where heterogeneity of site condition was not an important influence. We hypothesized that canopy composition affects total aboveground vascular herb layer biomass (THB) and species composition of herb layer plant biomass (SCHB) more significantly than primary soil fertility or slope exposure. The study was conducted in 227 randomly selected research plots in seven types of forest stands: pure with Alnus glutinosa, Betula pendula, Pinus sylvestris, Quercus petraea and Robinia pseudoacacia, and mixed with dominance of Acer pseudoplatanus or Betula pendula located on hilltop and northern, eastern, western, and southern slopes on a reclaimed, afforested post-mining spoil heap of the Bełchatów Brown Coal Mine (Poland). Generalized linear models (GLZ) showed that tree stand species were the best predictors of THB. Non-parametric variance tests showed significantly higher (nearly four times) THB under canopies of A. glutinosa, R. pseudoacacia, B. pendula and Q. petraea, compared to the lowest THB found under canopies of P. sylvestris and mixed with A. pseudoplatanus. Redundancy Analysis (RDA) showed that SCHB was significantly differentiated along gradients of light-nutrient herb layer species requirements. RDA and non-parametric variance tests showed that SCHB under canopies of A. glutinosa, R. pseudoacacia and mixed with A. pseudoplatanus had large shares of nitrophilous ruderal species (32%, 31% and 11%, respectively), whereas SCHB under B. pendula, Q. petraea, mixed with B. pendula and P. sylvestris were dominated by light-demanding meadow (49%, 51%, 51% and 36%, respectively) and Poaceae species. The results indicated the dominant role of tree stand composition in habitat-forming processes, and although primary site properties had minor importance, they were also modified by tree stand species. Copyright © 2018. Published by Elsevier B.V.

Effect of wakes on land-atmosphere fluxes

NASA Astrophysics Data System (ADS)

Markfort, C. D.; Zhang, W.; Porte-Agel, F.; Stefan, H. G.

2011-12-01

Wakes affect land-atmosphere fluxes of momentum and scalars, including water vapor and trace gases. Canopies and bluff bodies, including forests, buildings and topography, cause boundary layer flow separation, significantly extend flow recovery, and lead to a break down of standard Monin-Obukhov similarity relationships in the atmospheric boundary layer (ABL). Wakes generated by these land surface features persist for significant distances affecting a large fraction of the Earth's terrestrial surface. This effect is currently not accounted for in land-atmosphere modeling, and little is known about how heterogeneity of wake-generating features effect land surface fluxes. Additionally flux measurements, made in wake-affected regions, do not satisfy the homogeneous requirements for the standard eddy correlation (EC) method. This phenomenon often referred to as sheltering has been shown to affect momentum and kinetic energy fluxes into lakes from the atmosphere (Markfort et al. 2010). This presentation will highlight results from controlled wind tunnel experiments of neutral and thermally stratified boundary layers, using PIV and custom x-wire/cold-wire anemometry, designed to understand how the physical structure of upstream bluff bodies or porous canopies and thermal stability affect the separation zone, boundary layer recovery and surface fluxes. We also compare these results to field measurements taken with a Doppler LiDAR in the wake of a canopy and a building. We have found that there is a nonlinear relationship between porosity and flow separation behind a canopy to clearing transition. Results will provide the basis for new parameterizations to account for wake effects on land-atmosphere fluxes and corrections for EC measurements over open fields, lakes, and wetlands.

Turbulent water vapor exchanges and two source energy balance model estimated fluxes of heterogeneous vineyard canopies

NASA Astrophysics Data System (ADS)

Los, S.; Hipps, L.; Alfieri, J. G.; Prueger, J. H.; Kustas, W. P.

2017-12-01

Agriculture in semi-arid regions is globally facing increasing stress on water resources. Hence, knowledge of water used in irrigated crops is essential for water resource management. However, quantifying spatial and temporal distribution of evapotranspiration (ET) has proven difficult because of the inherent complexities involved. Understanding of the complex biophysical relationships that govern ET is incomplete, particularly for heterogeneous vegetation. The USDA-ARS is developing a remotely-sensed ET modeling system that utilizes a two-source energy balance (TSEB) model capable of simulating turbulent water and energy exchange from measurements of radiometric land surface temperature. The modeling system has been tested over a number of vegetated surfaces and is currently being validated for vineyard sites in the Central Valley of California through the Grape Remote sensing Atmospheric Profiling & Evapotranspiration eXperiment (GRAPEX). The highly variable, elevated canopy structure and semi-arid climatic conditions of these sites give the opportunity to gain knowledge of both turbulent exchange processes and the TSEB model's ability to simulate turbulent fluxes for heterogeneous vegetation. Analyzed are fast-response (20 Hz) 3-D velocity, temperature, and humidity measurements gathered over 4 years at two vineyard sites. These data were collected at a height of 5 m, within the surface layer but above the canopy, and at 1.5 m, below the canopy top. Power spectra and cross-spectra are used to study behavior of turbulent water vapor exchanges and coupling between the canopy layer and surface layer under various atmospheric conditions. Frequent light winds and unstable daytime conditions, combined with the complicated canopy structure, often induce intermittent and episodic turbulence transport. This resulted in a modal behavior alternating between periods of more continuous canopy venting and periods where water vapor fluxes are dominated by transient, low frequency events. Aerodynamic resistances derived by the TSEB model are examined, and modeled fluxes of water and energy are compared to measured values for various conditions. Efforts to characterize periods of intermittent behavior are presented and particular attention to model performance is given to these intermittent periods.

Transport in a Trellised Agricultural Canopy: Turbulence and Particle Dispersion

NASA Astrophysics Data System (ADS)

Miller, Nathan E.

Turbulent transport of momentum, scalars, and heavy particles within plant canopies is strongly impacted by the canopy's effect on the flow field in the canopy sub-layer (CSL). Although considerable research has been conducted on momentum and particle transport in and above dense homogeneous plant canopies, relatively little has been performed in perennial trellised canopies which have repetitive inhomogeneities at the scale of the canopy height. Particle transport in such canopies is of great interest due to the increasing use of training systems of this type by growers and due to the multitude of particle types regularly dispersed in these canopies, e.g., fungal spores and droplets sprayed by growers. The focus of this work is on the transport of momentum and fungal-spore-sized particles in a trellised vineyard canopy. Due to the discrete two-dimensional nature of the vineyard canopy, CSL flow characteristics differ from those seen in homogeneous canopies and change as a function of the above-canopy wind direction. To determine the specifics of how the trellised canopy geometry and local meteorological conditions combine to determine the characteristics of momentum and particle transport under all possible wind directions, multiple field campaigns were conducted in a vineyard in Oregon. During each of these campaigns, extensive meteorological data were collected while particles were released into the canopy and particle concentrations were sampled at downwind locations. The meteorological and plume data showed that the canopy exerted inhomogeneous nonisotropic drag, caused channeling of the flow along the aisles, and led to persistent coherent flow effects. The combination of these effects led to momentum statistics varying with wind direction, particle transport being biased to along the rows, and plume shapes being more complicated than those seen in homogeneous canopies or freestream flows.

Quantifying the influence of deep soil moisture on ecosystem albedo: The role of vegetation

NASA Astrophysics Data System (ADS)

Sanchez-Mejia, Zulia Mayari; Papuga, Shirley Anne; Swetish, Jessica Blaine; van Leeuwen, Willem Jan Dirk; Szutu, Daphne; Hartfield, Kyle

2014-05-01

As changes in precipitation dynamics continue to alter the water availability in dryland ecosystems, understanding the feedbacks between the vegetation and the hydrologic cycle and their influence on the climate system is critically important. We designed a field campaign to examine the influence of two-layer soil moisture control on bare and canopy albedo dynamics in a semiarid shrubland ecosystem. We conducted this campaign during 2011 and 2012 within the tower footprint of the Santa Rita Creosote Ameriflux site. Albedo field measurements fell into one of four Cases within a two-layer soil moisture framework based on permutations of whether the shallow and deep soil layers were wet or dry. Using these Cases, we identified differences in how shallow and deep soil moisture influence canopy and bare albedo. Then, by varying the number of canopy and bare patches within a gridded framework, we explore the influence of vegetation and soil moisture on ecosystem albedo. Our results highlight the importance of deep soil moisture in land surface-atmosphere interactions through its influence on aboveground vegetation characteristics. For instance, we show how green-up of the vegetation is triggered by deep soil moisture, and link deep soil moisture to a decrease in canopy albedo. Understanding relationships between vegetation and deep soil moisture will provide important insights into feedbacks between the hydrologic cycle and the climate system.

Soil Charcoal to Assess the Impacts of Past Human Disturbances on Tropical Forests

PubMed Central

Vleminckx, Jason; Morin-Rivat, Julie; Biwolé, Achille B.; Daïnou, Kasso; Gillet, Jean-François; Doucet, Jean-Louis; Drouet, Thomas; Hardy, Olivier J.

2014-01-01

The canopy of many central African forests is dominated by light-demanding tree species that do not regenerate well under themselves. The prevalence of these species might result from ancient slash-and-burn agricultural activities that created large openings, while a decline of these activities since the colonial period could explain their deficit of regeneration. To verify this hypothesis, we compared soil charcoal abundance, used as a proxy for past slash-and-burn agriculture, and tree species composition assessed on 208 rainforest 0.2 ha plots located in three areas from Southern Cameroon. Species were classified in regeneration guilds (pioneer, non-pioneer light-demanding, shade-bearer) and characterized by their wood-specific gravity, assumed to reflect light requirement. We tested the correlation between soil charcoal abundance and: (i) the relative abundance of each guild, (ii) each species and family abundance and (iii) mean wood-specific gravity. Charcoal was found in 83% of the plots, indicating frequent past forest fires. Radiocarbon dating revealed two periods of fires: “recent” charcoal were on average 300 years old (up to 860 BP, n = 16) and occurred in the uppermost 20 cm soil layer, while “ancient” charcoal were on average 1900 years old (range: 1500 to 2800 BP, n = 43, excluding one sample dated 9400 BP), and found in all soil layers. While we expected a positive correlation between the relative abundance of light-demanding species and charcoal abundance in the upper soil layer, overall there was no evidence that the current heterogeneity in tree species composition can be explained by charcoal abundance in any soil layer. The absence of signal supporting our hypothesis might result from (i) a relatively uniform impact of past slash-and-burn activities, (ii) pedoturbation processes bringing ancient charcoal to the upper soil layer, blurring the signal of centuries-old Human disturbances, or (iii) the prevalence of other environmental factors on species composition. PMID:25391134

Soil charcoal to assess the impacts of past human disturbances on tropical forests.

PubMed

Vleminckx, Jason; Morin-Rivat, Julie; Biwolé, Achille B; Daïnou, Kasso; Gillet, Jean-François; Doucet, Jean-Louis; Drouet, Thomas; Hardy, Olivier J

2014-01-01

The canopy of many central African forests is dominated by light-demanding tree species that do not regenerate well under themselves. The prevalence of these species might result from ancient slash-and-burn agricultural activities that created large openings, while a decline of these activities since the colonial period could explain their deficit of regeneration. To verify this hypothesis, we compared soil charcoal abundance, used as a proxy for past slash-and-burn agriculture, and tree species composition assessed on 208 rainforest 0.2 ha plots located in three areas from Southern Cameroon. Species were classified in regeneration guilds (pioneer, non-pioneer light-demanding, shade-bearer) and characterized by their wood-specific gravity, assumed to reflect light requirement. We tested the correlation between soil charcoal abundance and: (i) the relative abundance of each guild, (ii) each species and family abundance and (iii) mean wood-specific gravity. Charcoal was found in 83% of the plots, indicating frequent past forest fires. Radiocarbon dating revealed two periods of fires: "recent" charcoal were on average 300 years old (up to 860 BP, n = 16) and occurred in the uppermost 20 cm soil layer, while "ancient" charcoal were on average 1900 years old (range: 1500 to 2800 BP, n = 43, excluding one sample dated 9400 BP), and found in all soil layers. While we expected a positive correlation between the relative abundance of light-demanding species and charcoal abundance in the upper soil layer, overall there was no evidence that the current heterogeneity in tree species composition can be explained by charcoal abundance in any soil layer. The absence of signal supporting our hypothesis might result from (i) a relatively uniform impact of past slash-and-burn activities, (ii) pedoturbation processes bringing ancient charcoal to the upper soil layer, blurring the signal of centuries-old Human disturbances, or (iii) the prevalence of other environmental factors on species composition.

A specific PFT and sub-canopy structure for simulating oil palm in the Community Land Model

NASA Astrophysics Data System (ADS)

Fan, Y.; Knohl, A.; Roupsard, O.; Bernoux, M.; LE Maire, G.; Panferov, O.; Kotowska, M.; Meijide, A.

2015-12-01

Towards an effort to quantify the effects of rainforests to oil palm conversion on land-atmosphere carbon, water and energy fluxes, a specific plant functional type (PFT) and sub-canopy structure are developed for simulating oil palm within the Community Land Model (CLM4.5). Current global land surface models only simulate annual crops beside natural vegetation. In this study, a multilayer oil palm subroutine is developed in CLM4.5 for simulating oil palm's phenology and carbon and nitrogen allocation. The oil palm has monopodial morphology and sequential phenology of around 40 stacked phytomers, each carrying a large leaf and a fruit bunch, forming a natural multilayer canopy. A sub-canopy phenological and physiological parameterization is thus introduced, so that multiple phytomer components develop simultaneously but according to their different phenological steps (growth, yield and senescence) at different canopy layers. This specific multilayer structure was proved useful for simulating canopy development in terms of leaf area index (LAI) and fruit yield in terms of carbon and nitrogen outputs in Jambi, Sumatra (Fan et al. 2015). The study supports that species-specific traits, such as palm's monopodial morphology and sequential phenology, are necessary representations in terrestrial biosphere models in order to accurately simulate vegetation dynamics and feedbacks to climate. Further, oil palm's multilayer structure allows adding all canopy-level calculations of radiation, photosynthesis, stomatal conductance and respiration, beside phenology, also to the sub-canopy level, so as to eliminate scale mismatch problem among different processes. A series of adaptations are made to the CLM model. Initial results show that the adapted multilayer radiative transfer scheme and the explicit represention of oil palm's canopy structure improve on simulating photosynthesis-light response curve. The explicit photosynthesis and dynamic leaf nitrogen calculations per canopy layer also enhance simulated CO2 flux when compared to eddy covariance flux data. More investigations on energy and water fluxes and nitrogen balance are being conducted. These new schemes would hopefully promote the understanding of climatic effects of the tropical land use transformation system.

C-band backscattering from corn canopies

NASA Technical Reports Server (NTRS)

Daughtry, C. S. T.; Ranson, K. J.; Biehl, L. L.

1991-01-01

A frequency-modulatad continuous-wave C-band (4.8 GHz) scatterometer was mounted on an aerial lift truck, and backscatter coefficients of corn (Zea mays L.) were acquired as functions of polarizations, view angles, and row directions. As phytomass and green-leaf area index increased, the backscatter also increased. Near anthesis, when the canopies were fully developed, the major scattering elements were located in the upper 1 m of the 2.8 m tall canopy and little backscatter was measured below that level for view angles of 30 deg or greater. C-band backscatter data could provide information to monitor tillage operations at small view zenith angles and vegetation at large view zenith angles.

Leaf Area Influence on Surface Layer in a Deciduous Forest. Part 2; Detecting Leaf Area and Surface Resistance During Transition Seasons

NASA Technical Reports Server (NTRS)

Sakai, Ricardo K.; Fitzjarrald, David R.; Moore, Kathleen E.; Sicker, John W.; Munger, Willian J.; Goulden, Michael L.; Wofsy, Steven C.

1996-01-01

Temperate deciduous forest exhibit dramatic seasonal changes in surface exchange properties following on the seasonal changes in leaf area index. The canopy resistance to water vapor transport r(sub c) decreased abruptly at leaf emergence in each year but then also continued to decrease slowly during the remaining growing season due to slowly increasing LAI. Canopy resistance and PAR-albedo (albedo from photosynthetically active radiation) began to increase about one month before leaf fall with the diminishment of CO2 gradient above the canopy as well. At this time evaporation begun to be controlled as if the canopy were leafless.

Dependence of Photosynthetic Capacity, Photosynthetic Pigment Allocation, and Carbon Storage on Nitrogen Levels in Foliage of Aspen Stands

NASA Technical Reports Server (NTRS)

Middleton, Elizabeth M.; Sullivan, Joseph H.; Papagno, Andrea J.

2000-01-01

The role of foliar nitrogen (N) in the seasonal dynamics and vertical canopy distribution of photosynthetic pigments, photosynthetic capacity, and carbon (C) storage was investigated in boreal broadleaved species. The study was conducted at two different aged stands (60 y and 15 y) in 1994 and 1996 in Saskatchewan, Canada as part of the Boreal Ecosystem-Atmosphere Study (BOREAS). Foliage in upper and lower strata was examined for aspen (Populus tremuloides Michx.) and its associated hazelnut shrub (Corylus americana Walt.). We determined that C accumulation, expressed as dry mass per unit leaf area (mg C cm (exp -2)), was linearly dependent on N content (approximately 0.3- 3.5 mg N cm (exp -2))(r (exp 2) = 0.93, n=383, P less than 0.001) when eleven foliage groups were defined according to species, site, and developmental stage. C assembly was greatest in the upper aspen strata of both sites (seasonal average, 40.1 plus or minus 0.6 mg C cm (exp -2)), intermediate in the lower aspen strata (32.7 plus or minus 0.6), and considerably lower, and similar, in the hazelnut shrub layers (23.7 plus or minus 0.6) and in expanding aspen leaves (23.8 plus or minus 0.5); the lowest C assembly per unit N occurred in the two youngest, emerging leaf groups (17.1 plus or minus 0.6). Other relationships among physiological and biochemical variables were typically non-linear and were confounded by inclusion of the three groups of young (i.e., emerging or expanding) leaves, unless these were separately identified. Net C uptake, measured as photosynthetic capacity (A (sub max), micromole CO2 m (exp -2) s (exp -1)), was greater in aspen throughout the season, and optimal in mid-summer at a C:N ratio of approximately 18 (approximately 2.3 %N). When young leaves were excluded and logarithms of both variables were used, A (sub max) was approximately linearly dependent on N (mg N cm (exp-2) (r (exp 2) = 0.85, n= 193, P less than 0.001), attributed to incorporation of N into photosynthetic complexes and enzymes. In mature leaves, differences in pigment content vs. N among canopy strata were accentuated when N was expressed per unit leaf area (Mg cm (exp -2)) . However, the simplest log-linear relationship between a pigment variable and N was obtained for a ratio describing the relative allocation of photosynthetic pigment to Chl a (Chl a/[Chl b + carotenoids], microgram cm (exp -2)/ microgram cm-2) vs. %N (r (exp 2) = 0.90, n=343, P less than 0.001). Attainment of comparable A (sub max) Chl a content and relative Chl a allocation per unit N (mg cm (exp -2)) was achieved at different foliar N levels per canopy group: the lowest N requirement was for hazelnut leaves in the lowest, shaded stratum at the older, closed canopy site; the highest N requirement was in aspen leaves of the upper-most stratum at the younger, more open canopy site. These results highlight the differences in physiological responses between young and fully expanded leaves and show that sustaining those foliar constituents and processes important to C balance may require higher foliar N levels in leaves of establishing vs. mature aspen stands. There may be implications for remote-sensing assessments made for carbon balance in springtime, or over a landscape mosaic comprised of different aged stands.

A three-dimensional spatial mapping approach to quantify fine-scale heterogeneity among leaves within canopies1

PubMed Central

Wingfield, Jenna L.; Ruane, Lauren G.; Patterson, Joshua D.

2017-01-01

Premise of the study: The three-dimensional structure of tree canopies creates environmental heterogeneity, which can differentially influence the chemistry, morphology, physiology, and/or phenology of leaves. Previous studies that subdivide canopy leaves into broad categories (i.e., “upper/lower”) fail to capture the differences in microenvironments experienced by leaves throughout the three-dimensional space of a canopy. Methods: We use a three-dimensional spatial mapping approach based on spherical polar coordinates to examine the fine-scale spatial distributions of photosynthetically active radiation (PAR) and the concentration of ultraviolet (UV)-absorbing compounds (A300) among leaves within the canopies of black mangroves (Avicennia germinans). Results: Linear regressions revealed that interior leaves received less PAR and produced fewer UV-absorbing compounds than leaves on the exterior of the canopy. By allocating more UV-absorbing compounds to the leaves on the exterior of the canopy, black mangroves may be maximizing UV-protection while minimizing biosynthesis of UV-absorbing compounds. Discussion: Three-dimensional spatial mapping provides an inexpensive and portable method to detect fine-scale differences in environmental and biological traits within canopies. We used it to understand the relationship between PAR and A300, but the same approach can also be used to identify traits associated with the spatial distribution of herbivores, pollinators, and pathogens. PMID:29188145

Effects of structural complexity on within-canopy light environments and leaf traits in a northern mixed deciduous forest.

PubMed

Fotis, Alexander T; Curtis, Peter S

2017-10-01

Canopy structure influences forest productivity through its effects on the distribution of radiation and the light-induced changes in leaf physiological traits. Due to the difficulty of accessing and measuring forest canopies, few field-based studies have quantitatively linked these divergent scales of canopy functioning. The objective of our study was to investigate how canopy structure affects light profiles within a forest canopy and whether leaves of mature trees adjust morphologically and biochemically to the light environments characteristic of canopies with different structural complexity. We used a combination of light detection and ranging (LiDAR) data and hemispherical photographs to quantify canopy structure and light environments, respectively, and a telescoping pole to sample leaves. Leaf mass per area (LMA), nitrogen on an area basis (Narea) and chlorophyll on a mass basis (Chlmass) were measured in red maple (Acer rubrum), american beech (Fagus grandifolia), white pine (Pinus strobus), and northern red oak (Quercus rubra) at different heights in plots with similar leaf area index but contrasting canopy complexity (rugosity). We found that more complex canopies had greater porosity and reduced light variability in the midcanopy while total light interception was unchanged relative to less complex canopies. Leaf phenotypes of F. grandifolia, Q. rubra and P. strobus were more sun-acclimated in the midstory of structurally complex canopies while leaf phenotypes of A. rubrum were more shade-acclimated (lower LMA) in the upper canopy of more complex stands, despite no differences in total light interception. Broadleaf species showed further differences in acclimation with increased Narea and reduced Chlmass in leaves with higher LMA, while P. strobus showed no change in Narea and Chlmass with higher LMA. Our results provide new insight on how light distribution and leaf acclimation in mature trees might be altered when natural and anthropogenic disturbances cause structural changes in the canopy. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Impact of aerodynamic resistance formulations used in two-source modeling of energy exchange from the soil and vegetation using land surface temperature

USDA-ARS?s Scientific Manuscript database

Application of the Two-Source Energy Balance (TSEB) Model using land surface temperature (LST) requires aerodynamic resistance parameterizations for the flux exchange above the canopy layer, within the canopy air space and at the soil/substrate surface. There are a number of aerodynamic resistance f...

MECS-VINE®: A New Proximal Sensor for Segmented Mapping of Vigor and Yield Parameters on Vineyard Rows

PubMed Central

Gatti, Matteo; Dosso, Paolo; Maurino, Marco; Merli, Maria Clara; Bernizzoni, Fabio; José Pirez, Facundo; Platè, Bonfiglio; Bertuzzi, Gian Carlo; Poni, Stefano

2016-01-01

Ground-based proximal sensing of vineyard features is gaining interest due to its ability to serve in even quite small plots with the advantage of being conducted concurrently with normal vineyard practices (i.e., spraying, pruning or soil tilling) with no dependence upon weather conditions, external services or law-imposed limitations. The purpose of the present work was to test performance of the new terrestrial multi-sensor MECS-VINE® in terms of reliability and degree of correlation with several canopy growth and yield parameters in the grapevine. MECS-VINE®, once conveniently positioned in front of the tractor, can provide simultaneous assessment of growth features and microclimate of specific canopy sections of the two adjacent row sides. MECS-VINE® integrates a series of microclimate sensors (air relative humidity, air and surface temperature) with two (left and right) matrix-based optical RGB imaging sensors and a related algorithm, termed Canoyct). MECS-VINE® was run five times along the season in a mature cv. Barbera vineyard and a Canopy Index (CI, pure number varying from 0 to 1000), calculated through its built-in algorithm, validated vs. canopy structure parameters (i.e., leaf layer number, fractions of canopy gaps and interior leaves) derived from point quadrat analysis. Results showed that CI was highly correlated vs. any canopy parameter at any date, although the closest relationships were found for CI vs. fraction of canopy gaps (R2 = 0.97) and leaf layer number (R2 = 0.97) for data pooled over 24 test vines. While correlations against canopy light interception and total lateral leaf area were still unsatisfactory, a good correlation was found vs. cluster and berry weight (R2 = 0.76 and 0.71, respectively) suggesting a good potential also for yield estimates. Besides the quite satisfactory calibration provided, main improvements of MECS-VINE® usage versus other current equipment are: (i) MECS-VINE® delivers a segmented evaluation of the canopy up to 15 different sectors, therefore allowing to differentiate canopy structure and density at specific and crucial canopy segments (i.e., basal part where clusters are located) and (ii) the sensor is optimized to work at any time of the day with any weather condition without the need of any supplemental lighting system. PMID:27898049

Implementation of spaceborne lidar-retrieved canopy height in the WRF model

NASA Astrophysics Data System (ADS)

Lee, Junhong; Hong, Jinkyu

2016-06-01

Canopy height is closely related to biomass and aerodynamic properties, which regulate turbulent transfer of energy and mass at the soil-vegetation-atmosphere continuum. However, this key information has been prescribed as a constant value in a fixed plant functional type in atmospheric models. This paper is the first to report impacts of using realistic forest canopy height, retrieved from spaceborne lidar, on regional climate simulation by using the canopy height data in the Weather Research and Forecasting (WRF) model's land surface model. Numerical simulations were conducted over the Amazon Basin during summer season. Over this region, the lidar-retrieved canopy heights were higher than the default values used in the WRF, which are dependent only on plant functional type. By modifying roughness length and zero-plane displacement height, the change of canopy height resulted in changes in surface energy balance by regulating aerodynamic conductances and vertical temperature gradient, thus modifying the lifting condensation level and equivalent potential temperature in the atmospheric boundary layer. Our analysis also showed that the WRF model better reproduced the observed precipitation when lidar-retrieved canopy height was used over the Amazon Basin.

Spatial fuel data products of the LANDFIRE Project

USGS Publications Warehouse

Reeves, M.C.; Ryan, K.C.; Rollins, M.G.; Thompson, T.G.

2009-01-01

The Landscape Fire and Resource Management Planning Tools (LANDFIRE) Project is mapping wildland fuels, vegetation, and fire regime characteristics across the United States. The LANDFIRE project is unique because of its national scope, creating an integrated product suite at 30-m spatial resolution and complete spatial coverage of all lands within the 50 states. Here we describe development of the LANDFIRE wildland fuels data layers for the conterminous 48 states: surface fire behavior fuel models, canopy bulk density, canopy base height, canopy cover, and canopy height. Surface fire behavior fuel models are mapped by developing crosswalks to vegetation structure and composition created by LANDFIRE. Canopy fuels are mapped using regression trees relating field-referenced estimates of canopy base height and canopy bulk density to satellite imagery, biophysical gradients and vegetation structure and composition data. Here we focus on the methods and data used to create the fuel data products, discuss problems encountered with the data, provide an accuracy assessment, demonstrate recent use of the data during the 2007 fire season, and discuss ideas for updating, maintaining and improving LANDFIRE fuel data products.

The impact of modifying photosystem antenna size on canopy photosynthetic efficiency—Development of a new canopy photosynthesis model scaling from metabolism to canopy level processes

PubMed Central

Song, Qingfeng; Wang, Yu; Qu, Mingnan; Ort, Donald R.

2017-01-01

Abstract Canopy photosynthesis (Ac) describes photosynthesis of an entire crop field and the daily and seasonal integrals of Ac positively correlate with daily and seasonal biomass production. Much effort in crop breeding has focused on improving canopy architecture and hence light distribution inside the canopy. Here, we develop a new integrated canopy photosynthesis model including canopy architecture, a ray tracing algorithm, and C3 photosynthetic metabolism to explore the option of manipulating leaf chlorophyll concentration ([Chl]) for greater Ac and nitrogen use efficiency (NUE). Model simulation results show that (a) efficiency of photosystem II increased when [Chl] was decreased by decreasing antenna size and (b) the light received by leaves at the bottom layers increased when [Chl] throughout the canopy was decreased. Furthermore, the modelling revealed a modest ~3% increase in Ac and an ~14% in NUE was accompanied when [Chl] reduced by 60%. However, if the leaf nitrogen conserved by this decrease in leaf [Chl] were to be optimally allocated to other components of photosynthesis, both Ac and NUE can be increased by over 30%. Optimizing [Chl] coupled with strategic reinvestment of conserved nitrogen is shown to have the potential to support substantial increases in Ac, biomass production, and crop yields. PMID:28755407

Climatic, biological, and land cover controls on the exchange of gas-phase semivolatile chemical pollutants between forest canopies and the atmosphere.

PubMed

Nizzetto, Luca; Perlinger, Judith A

2012-03-06

An ecophysiological model of a structured broadleaved forest canopy was coupled to a chemical fate model of the air-canopy exchange of gaseous semivolatile chemicals to dynamically assess the short-term (hours) and medium term (days to season) air-canopy exchange and the influence of biological, climatic, and land cover drivers on the dynamics of the air-canopy exchange and on the canopy storage for airborne semivolatile pollutants. The chemical fate model accounts for effects of short-term variations in air temperature, wind speed, stomatal opening, and leaf energy balance, all as a function of layer in the canopy. Simulations showed the potential occurrence of intense short/medium term re-emission of pollutants having log K(OA) up to 10.7 from the canopy as a result of environmental forcing. In addition, relatively small interannual variations in seasonally averaged air temperature, canopy biomass, and precipitation can produce relevant changes in the canopy storage capacity for the chemicals. It was estimated that possible climate change related variability in environmental parameters (e.g., an increase of 2 °C in seasonally averaged air temperature in combination with a 10% reduction in canopy biomass due to, e.g., disturbance or acclimatization) may cause a reduction in canopy storage capacity of up to 15-25%, favoring re-emission and potential for long-range atmospheric transport. On the other hand, an increase of 300% in yearly precipitation can increase canopy sequestration by 2-7% for the less hydrophobic compounds.

Diversity of Bats in Contrasting Habitats of Hulu Terengganu Dipterocarp Forest and Setiu Wetland BRIS Forest with a Note on Preliminary Study of Vertical Stratification of Pteropodid Bats

PubMed Central

Pounsin, Grace; Wahab, Nur Syahirah; Roslan, Azuan; Zahidin, Muhamad Aidil; Pesiu, Elizabeth; Tamrin, Nur Aida Md; Abdullah, M T

2018-01-01

A study of the bat diversity was conducted in Hulu Terengganu dipterocarp forest and Setiu Wetland Beach Ridges Interspersed with Swales (BRIS) forest in Terengganu, to study the species diversity, composition and stratification of fruit bats from the understorey to the forest canopy. Mist nets were set up at the understorey, sub-canopy and canopy layer while harp traps were set up at the understorey layer. We recorded 170 individuals from six families’ compromised 21 species from Hulu Terengganu dipterocarp forests and four species from Setiu Wetland BRIS forests throughout the sampling period. Megaerops ecaudatus and Cynopterus brachyotis were the most dominant species in Hulu Terengganu dipterocarp forest and Setiu Wetland BRIS forests. Our study also recorded two species with new distributional records for the east coast of Peninsular Malaysia, namely, Rhinolophus chiewkweeae and Chaerephon johorensis in Hulu Terengganu dipterocarp forests. Potential factors that might influence the results were in terms of the canopy covers, the structural complexity of canopy, food availability and spatial characteristics. This study was able to increase the knowledge on the species diversity and composition of bats in Hulu Terengganu dipterocarp forest and Setiu Wetland BRIS forest, thus, further aid in the effort of bat conservation in both areas. PMID:29644015

Co-optimal distribution of leaf nitrogen and hydraulic conductance in plant canopies.

PubMed

Peltoniemi, Mikko S; Duursma, Remko A; Medlyn, Belinda E

2012-05-01

Leaf properties vary significantly within plant canopies, due to the strong gradient in light availability through the canopy, and the need for plants to use resources efficiently. At high light, photosynthesis is maximized when leaves have a high nitrogen content and water supply, whereas at low light leaves have a lower requirement for both nitrogen and water. Studies of the distribution of leaf nitrogen (N) within canopies have shown that, if water supply is ignored, the optimal distribution is that where N is proportional to light, but that the gradient of N in real canopies is shallower than the optimal distribution. We extend this work by considering the optimal co-allocation of nitrogen and water supply within plant canopies. We developed a simple 'toy' two-leaf canopy model and optimized the distribution of N and hydraulic conductance (K) between the two leaves. We asked whether hydraulic constraints to water supply can explain shallow N gradients in canopies. We found that the optimal N distribution within plant canopies is proportional to the light distribution only if hydraulic conductance, K, is also optimally distributed. The optimal distribution of K is that where K and N are both proportional to incident light, such that optimal K is highest to the upper canopy. If the plant is constrained in its ability to construct higher K to sun-exposed leaves, the optimal N distribution does not follow the gradient in light within canopies, but instead follows a shallower gradient. We therefore hypothesize that measured deviations from the predicted optimal distribution of N could be explained by constraints on the distribution of K within canopies. Further empirical research is required on the extent to which plants can construct optimal K distributions, and whether shallow within-canopy N distributions can be explained by sub-optimal K distributions.

The Eocene Canopy of the Northwestern Gulf of Mexico explained by the Mechanism of Squeezed Diapirs - A Numerical Modeling Study

NASA Astrophysics Data System (ADS)

Gradmann, Sofie; Beaumont, Christopher

2010-05-01

Multiple salt canopies of variable size have developed in the Gulf of Mexico since the Palaeogene, and are now located at several different structural levels. Little is known about their emplacement and early evolution. In some cases, the underlying structures are shielded by salt from seismic imaging. In others, salt has been entirely evacuated from the canopies, and only a salt weld remains. Allochthonous salt structures can have a major influence on the structural evolution of a basin when they act as a detachment layer, and may also affect the sediment deposition patterns and the development of hydrocarbon systems. This study focuses on the evolution of a salt canopy located in the northwestern Gulf of Mexico. This canopy developed during the Eocene in the center of an up to 350 km wide Mid-Jurassic salt basin. In its later stages, it acted as a detachment surface for large-scale Oligo-Miocene gravity spreading. By localizing gravitational instabilities at the allochthonous level, the canopy likely postponed gravity-driven deformation above the distal part of the allochthonous salt basin until the late Oligocene, at which time the Perdido Fold Belt began to form at the distal end of the basin. We investigate the circumstances under which the Eocene canopy could have evolved via the mechanism of squeezed diapirs. During such a process, shortening of a region containing pre-existing diapirs will be absorbed by the salt (the weakest part of the system), which is then expelled upwards to the seafloor. We use 2D finite-element models to study the evolution of an analogous canopy. The models comprise a viscous salt layer overlain by a frictional-plastic passive margin sedimentary sequence from shelf to deep water, thereby incorporating the dynamical interaction of gravity spreading caused by shelf progradation. Model experiments include sediment compaction, flexural isostasy, loading by the overlying water column, and parametric calculations of the effects of pore-fluid pressures in the frictional-plastic sediments. The models integrate two phases of the basin evolution: Phase 1 in which diapirs develop during sediment aggradation, and Phase 2 in which sediment progradation leads to gravity spreading, shortening (squeezing) of the diapirs, expulsion of salt and the development of a canopy. The Phase 1 modeling presents a new mechanism for diapir initiation and evolution, which has remained a poorly understood aspect of salt tectonics. This mechanism is based on the idea that local bathymetric expressions (such as channel-levee systems or turbidite deposits) can be preserved by sedimentation patterns. These structures need to adjust isostatically relative to the salt layer. In an aggradational environment in which the bathymetric profile is maintained, this local balancing can create sufficient pressure differences to drive diapirism. These diapirs can form in a neutral stress regime and can fully develop before they get squeezed by shortening. The evolving model canopies show characteristics similar to the Eocene canopy of the northwestern Gulf of Mexico (such as its lateral extent, the structure of the underlying strata, and the postponing of deformation above the distal salt basin). They also share important characteristics with other canopies, for example, the Eocene canopy of the northern Gulf of Mexico.

Assessing alternative measures of tree canopy cover: Photo-interpreted NAIP and ground-based estimates

Treesearch

Chris Toney; Greg Liknes; Andy Lister; Dacia Meneguzzo

2012-01-01

In preparation for the development of the National Land Cover Database (NLCD) 2011 tree canopy cover layer, a pilot project for research and method development was completed in 2010 by the USDA Forest Service Forest Inventory and Analysis (FIA) program and Remote Sensing Applications Center (RSAC).This paper explores one of several topics investigated during the NLCD...

Harvest-created canopy gaps increase species and functional trait diversity of the forest ground-layer community

Treesearch

Christel C. Kern; Rebecca A. Montgomery; Peter B. Reich; Terry F. Strong

2014-01-01

Biodiversity conservation within managed forests depends, in part, on management practices that restore or maintain plant community diversity and function. Because many plant communities are adapted to natural disturbances, gap-based management has potential to meet this need by using the historical range of variation in canopy disturbances to guide elements of harvest...

Vertical variability and effect of stability on turbulence characteristics down to the floor of a pine forest

NASA Astrophysics Data System (ADS)

Launiainen, Samuli; Vesala, Timo; Mölder, Meelis; Mammarella, Ivan; Smolander, Sampo; Rannik, Üllar; Kolari, Pasi; Hari, Pertti; Lindroth, Anders; Katul, Gabriel G.

2007-11-01

Among the fundamental problems in canopy turbulence, particularly near the forest floor, remain the local diabatic effects and linkages between turbulent length scales and the canopy morphology. To progress on these problems, mean and higher order turbulence statistics are collected in a uniform pine forest across a wide range of atmospheric stability conditions using five 3-D anemometers in the subcanopy. The main novelties from this experiment are: (1) the agreement between second-order closure model results and measurements suggest that diabatic states in the layer above the canopy explain much of the modulations of the key velocity statistics inside the canopy except in the immediate vicinity of the trunk space and for very stable conditions. (2) The dimensionless turbulent kinetic energy in the trunk space is large due to a large longitudinal velocity variance but it is inactive and contributes little to momentum fluxes. (3) Near the floor layer, a logarithmic mean velocity profile is formed and vertical eddies are strongly suppressed modifying all power spectra. (4) A spectral peak in the vertical velocity near the ground commensurate with the trunk diameter emerged at a moderate element Reynolds number consistent with Strouhal instabilities describing wake production.

Simultaneous effects of leaf irradiance and soil moisture on growth and root system architecture of novel wheat genotypes: implications for phenotyping

PubMed Central

Nagel, Kerstin A.; Bonnett, David; Furbank, Robert; Walter, Achim; Schurr, Ulrich; Watt, Michelle

2015-01-01

Plants in the field are exposed to varying light and moisture. Agronomic improvement requires knowledge of whole-plant phenotypes expressed in response to simultaneous variation in these essential resources. Most phenotypes, however, have been described from experiments where resources are varied singularly. To test the importance of varying shoot and root resources for phenotyping studies, sister pre-breeding lines of wheat were phenotyped in response to independent or simultaneous exposure to two light levels and soil moisture profiles. The distribution and architecture of the root systems depended strongly on the moisture of the deeper soil layer. For one genotype, roots, specifically lateral roots, were stimulated to grow into moist soil when the upper zone was well-watered and were inhibited by drier deep zones. In contrast, the other genotype showed much less plasticity and responsiveness to upper moist soil, but maintained deeper penetration of roots into the dry layer. The sum of shoot and root responses was greater when treated simultaneously to low light and low soil water, compared to each treatment alone, suggesting the value of whole plant phenotyping in response to multiple conditions for agronomic improvement. The results suggest that canopy management for increased irradiation of leaves would encourage root growth into deeper drier soil, and that genetic variation within closely related breeding lines may exist to favour surface root growth in response to irrigation or in-season rainfall. PMID:26089535

Light drives vertical gradients of leaf morphology in a sugar maple (Acer saccharum) forest.

PubMed

Coble, Adam P; Cavaleri, Molly A

2014-02-01

Leaf mass per area (LMA, g m(-2)) is an essential trait for modeling canopy function due to its strong association with photosynthesis, respiration and leaf nitrogen. Leaf mass per area, which is influenced by both leaf thickness and density (LMA = thickness × density), generally increases from the bottom to the top of tree canopies, yet the mechanisms behind this universal pattern are not yet resolved. For decades, the light environment was assumed to be the most influential driver of within-canopy variation in LMA, yet recent evidence has shown hydrostatic gradients to be more important in upper canopy positions, especially in tall evergreen trees in temperate and tropical forests. The aim of this study was to disentangle the importance of various environmental drivers on vertical LMA gradients in a mature sugar maple (Acer saccharum Marshall) forest. We compared LMA, leaf density and leaf thickness relationships with height, light and predawn leaf water potential (ΨPre) within a closed and an exposed canopy to assess leaf morphological traits at similar heights but different light conditions. Contrary to our expectations and recent findings in the literature, we found strong evidence that light was the primary driver of vertical gradients in leaf morphology. At similar heights (13-23 m), LMA was greater within the exposed canopy than the closed canopy, and light had a stronger influence over LMA compared with ΨPre. Light also had a stronger influence over both leaf thickness and density compared with ΨPre; however, the increase in LMA within both canopy types was primarily due to increasing leaf thickness with increasing light availability. This study provides strong evidence that canopy structure and crown exposure, in addition to height, should be considered as a parameter for determining vertical patterns in LMA and modeling canopy function.

The Role of Structural, Biochemical and Ecophysiological Plant Acclimation in the Eco-Hydrologic Response of Agro-Ecosystems to Global Change in the Central US

NASA Astrophysics Data System (ADS)

Drewry, D.; Kumar, P.; Long, S.; Sivapalan, M.; Bernacchi, C.; Liang, X.

2009-12-01

The acclimation of terrestrial vegetation to changes in ambient growth environment has significant implications for land-atmosphere exchange of carbon dioxide (CO2) and energy, as well as critical ecosystem services such as food production. Recent field campaigns at the SoyFACE Free Air Carbon Enrichment (FACE) facility in central Illinois have provided clear evidence of the modification of structural, biochemical and ecophysiological properties of key agricultural species at CO2 concentrations projected for the middle of this century. While these acclamatory responses have been linked to changes in leaf-level gas exchange and leaf states (ie. leaf temperature and stomatal conductance), determining the implications for these changes at the canopy-scale has remained a challenge. Here we present a simulation analysis that examines the role of observed plant acclimation in two key mid-west agricultural species, soy (C3 photosynthetic pathway) and corn (C4 photosynthetic pathway), in modifying future carbon uptake and surface energy partitioning, crop water use and resilience to water stress. The model canopies are divided into multiple layers, allowing for resolution of the shortwave and longwave radiation regimes that drive photosynthesis, stomatal conductance and leaf energy balance in each layer, along with the canopy microclimate. The canopy component of the model is coupled to a multi-layer soil-root model that computes soil moisture and root water uptake at each time period, accounting for the effects of moisture stress on canopy functioning. Model skill in capturing the sub-diurnal variability in canopy-atmosphere fluxes is demonstrated using multi-year records of eddy covariance CO2, water vapor and heat fluxes collected at the Bondville (Illinois) AmeriFlux site. An evaluation of the ability of the model to simulate observed changes in energy balance components, leaf-level photosynthetic assimilation, leaf temperature and stomatal conductance under elevated CO2 concentrations projected for 2050 (550 ppm) is conducted through observations collected at SoyFACE over several recent growing seasons. With this validated model we quantify the role of structural, biochemical and ecophysiological acclimation on canopy-atmosphere exchange of CO2, water vapor and heat, and examine the within-canopy variability of flux densities and states to elevated CO2 perturbations. The role of meteorological forcing conditions and soil moisture status on mediating the changes in canopy-atmosphere interactions is examined. The model is then used to investigate the magnitude and direction of changes in fluxes and water use efficiency as ambient CO2 is elevated across a range of concentrations expected through the coming century.

Land fragmentationn and impacts to streams and fish in the central and upper midwest

Treesearch

Elon S. Verry

2000-01-01

Fragmentation of the land means changes in the vegetative cover. This alone has caused significant and wide spread physical and water quality changes to the streams and rivers in the central and upper Midwest. Removal of the forest canopy that changes land use to "open" conditions: agricultural, urban, or rights of way, is sufficient to initiate and prolong...

Nighttime wind and scalar variability within and above an Amazonian canopy

NASA Astrophysics Data System (ADS)

Oliveira, Pablo E. S.; Acevedo, Otávio C.; Sörgel, Matthias; Tsokankunku, Anywhere; Wolff, Stefan; Araújo, Alessandro C.; Souza, Rodrigo A. F.; Sá, Marta O.; Manzi, Antônio O.; Andreae, Meinrat O.

2018-03-01

Nocturnal turbulent kinetic energy (TKE) and fluxes of energy, CO2 and O3 between the Amazon forest and the atmosphere are evaluated for a 20-day campaign at the Amazon Tall Tower Observatory (ATTO) site. The distinction of these quantities between fully turbulent (weakly stable) and intermittent (very stable) nights is discussed. Spectral analysis indicates that low-frequency, nonturbulent fluctuations are responsible for a large portion of the variability observed on intermittent nights. In these conditions, the low-frequency exchange may dominate over the turbulent transfer. In particular, we show that within the canopy most of the exchange of CO2 and H2O happens on temporal scales longer than 100 s. At 80 m, on the other hand, the turbulent fluxes are almost absent in such very stable conditions, suggesting a boundary layer shallower than 80 m. The relationship between TKE and mean winds shows that the stable boundary layer switches from the very stable to the weakly stable regime during intermittent bursts of turbulence. In general, fluxes estimated with long temporal windows that account for low-frequency effects are more dependent on the stability over a deeper layer above the forest than they are on the stability between the top of the canopy and its interior, suggesting that low-frequency processes are controlled over a deeper layer above the forest.

A long-term study of tree seedling recruitment in Southern Appalachian forests: the effects of canopy gaps and shrub understories

Treesearch

Brian Beckage; James S. Clark; Barton D. Clinton; Bruce L. Haines

2000-01-01

We examined the importance of intermediate-sized gaps and a dense shrub layer on tree seedling recruitment in a Southern Appalachian deciduous forest. We created 12 canopy gaps under two contrasting understory conditions: 6 gaps were dominated by the dense, shade-producing shrub, Rhododendron maximum L., while the remaining gaps were relatively open...

Mercury in litterfall and upper soil horizons in forested ecosystems in Vermont, USA.

PubMed

Juillerat, Juliette I; Ross, Donald S; Bank, Michael S

2012-08-01

Mercury (Hg) is an atmospheric pollutant that, in forest ecosystems, accumulates in foliage and upper soil horizons. The authors measured soil and litterfall Hg at 15 forest sites (northern hardwood to mixed hardwood/conifer) throughout Vermont, USA, to examine variation among tree species, forest type, and soils. Differences were found among the 12 tree species sampled from at least two sites, with Acer pensylvanicum having significantly greater litterfall total Hg concentration. Senescent leaves had greater Hg concentrations if they originated lower in the canopy or had higher surface:weight ratios. Annual litterfall Hg flux had a wide range, 12.6 to 28.5 µg/m(2) (mean, 17.9 µg/m(2) ), not related to forest type. Soil and Hg pools in the Oi horizon (litter layer) were not related to the measured Hg deposition flux in litterfall or to total modeled Hg deposition. Despite having lower Hg concentrations, upper mineral soil (A horizons) had greater Hg pools than organic soil horizons (forest floor) due to greater bulk density. Significant differences were found in Hg concentration and Hg/C ratio among soil horizons but not among forest types. Overall, our findings highlight the importance of site history and the benefits of collecting litterfall and soils simultaneously. Observed differences in forest floor Hg pools were strongly correlated with carbon pools, which appeared to be a function of historic land-use patterns. Copyright © 2012 SETAC.

A simple biosphere model (SiB) for use within general circulation models

NASA Technical Reports Server (NTRS)

Sellers, P. J.; Mintz, Y.; Sud, Y. C.; Dalcher, A.

1986-01-01

A simple realistic biosphere model for calculating the transfer of energy, mass and momentum between the atmosphere and the vegetated surface of the earth has been developed for use in atmospheric general circulation models. The vegetation in each terrestrial model grid is represented by an upper level, representing the perennial canopy of trees and shrubs, and a lower level, representing the annual cover of grasses and other heraceous species. The vegetation morphology and the physical and physiological properties of the vegetation layers determine such properties as: the reflection, transmission, absorption and emission of direct and diffuse radiation; the infiltration, drainage, and storage of the residual rainfall in the soil; and the control over the stomatal functioning. The model, with prescribed vegetation parameters and soil interactive soil moisture, can be used for prediction of the atmospheric circulation and precipitaion fields for short periods of up to a few weeks.

Flooding and forest succession in a modified stretch along the Upper Mississippi River

USGS Publications Warehouse

Yin, Yao

1998-01-01

This research examines the effect of a rare flood on floodplain forest regeneration in a 102-km stretch of the Mississippi River beginning 21 km above the mouth of the Ohio River. The river has been restricted by levees and navigation structures and subjected to sediment dredging to maintain a stable navigation channel. Because the bank erosion–accretion process has been slowed or eliminated, cottonwood (Populus spp.) and willow (Salix spp.) communities regenerate poorly in the modified river environment. An unusually large flood in 1993 destroyed the entire ground vegetation layer, killing 77.2% of the saplings and 32.2% of the trees. The flood created an alternative mechanism for cottonwood and willow to regenerate under canopy openings, enabling the community type composition of the present-day forest to be sustained for the next 50 years. Over time, however, the forest will likely exhibit considerable compositional fluctuation. 

Estimating structural attributes of Douglas-fir/western hemlock forest stands from Landsat and SPOT imagery

NASA Technical Reports Server (NTRS)

Cohen, Warren B.; Spies, Thomas A.

1992-01-01

Relationships between spectral and texture variables derived from SPOT HRV 10 m panchromatic and Landsat TM 30 m multispectral data and 16 forest stand structural attributes is evaluated to determine the utility of satellite data for analysis of hemlock forests west of the Cascade Mountains crest in Oregon and Washington, USA. Texture of the HRV data was found to be strongly related to many of the stand attributes evaluated, whereas TM texture was weakly related to all attributes. Data analysis based on regression models indicates that both TM and HRV imagery should yield equally accurate estimates of forest age class and stand structure. It is concluded that the satellite data are a valuable source for estimation of the standard deviation of tree sizes, mean size and density of trees in the upper canopy layers, a structural complexity index, and stand age.

The impact of modifying photosystem antenna size on canopy photosynthetic efficiency-Development of a new canopy photosynthesis model scaling from metabolism to canopy level processes.

PubMed

Song, Qingfeng; Wang, Yu; Qu, Mingnan; Ort, Donald R; Zhu, Xin-Guang

2017-12-01

Canopy photosynthesis (A c ) describes photosynthesis of an entire crop field and the daily and seasonal integrals of A c positively correlate with daily and seasonal biomass production. Much effort in crop breeding has focused on improving canopy architecture and hence light distribution inside the canopy. Here, we develop a new integrated canopy photosynthesis model including canopy architecture, a ray tracing algorithm, and C 3 photosynthetic metabolism to explore the option of manipulating leaf chlorophyll concentration ([Chl]) for greater A c and nitrogen use efficiency (NUE). Model simulation results show that (a) efficiency of photosystem II increased when [Chl] was decreased by decreasing antenna size and (b) the light received by leaves at the bottom layers increased when [Chl] throughout the canopy was decreased. Furthermore, the modelling revealed a modest ~3% increase in A c and an ~14% in NUE was accompanied when [Chl] reduced by 60%. However, if the leaf nitrogen conserved by this decrease in leaf [Chl] were to be optimally allocated to other components of photosynthesis, both A c and NUE can be increased by over 30%. Optimizing [Chl] coupled with strategic reinvestment of conserved nitrogen is shown to have the potential to support substantial increases in A c , biomass production, and crop yields. © 2017 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd.

Modelling the effect of diffuse light on canopy photosynthesis in controlled environments

NASA Technical Reports Server (NTRS)

Cavazzoni, James; Volk, Tyler; Tubiello, Francesco; Monje, Oscar; Janes, H. W. (Principal Investigator)

2002-01-01

A layered canopy model was used to analyze the effects of diffuse light on canopy gross photosynthesis in controlled environment plant growth chambers, where, in contrast to the field, highly diffuse light can occur at high irradiance. The model suggests that high diffuse light fractions (approximately 0.7) and irradiance (1400 micromoles m-2 s-1) may enhance crop life-cycle canopy gross photosynthesis for hydroponic wheat by about 20% compared to direct light at the same irradiance. Our simulations suggest that high accuracy is not needed in specifying diffuse light fractions in chambers between approximately 0.7 and 1, because simulated photosynthesis for closed canopies plateau in this range. We also examined the effect of leaf angle distribution on canopy photosynthesis under growth chamber conditions, as these distributions determine canopy extinction coefficients for direct and diffuse light. We show that the spherical leaf angle distribution is not suitable for modeling photosynthesis of planophile canopies (e.g., soybean and peanut) in growth chambers. Also, the absorption of the light reflected from the surface below the canopy should generally be included in model simulations, as the corresponding albedo values in the photosynthetically active range may be quite high in growth chambers (e.g., approximately 0.5). In addition to the modeling implications, our results suggest that diffuse light conditions should be considered when drawing conclusions from experiments in controlled environments.

An inter-model comparison of urban canopy effects on climate

NASA Astrophysics Data System (ADS)

Halenka, Tomas; Karlicky, Jan; Huszar, Peter; Belda, Michal; Bardachova, Tatsiana

2017-04-01

The role of cities is increasing and will continue to increase in future, as the population within the urban areas is growing faster, with the estimate for Europe of about 84% living in urban areas in about mid of 21st century. To assess the impact of cities and, in general, urban surfaces on climate, using of modeling approach is well appropriate. Moreover, with higher resolution, urban areas becomes to be better resolved in the regional models and their relatively significant impacts should not be neglected. Model descriptions of urban canopy related meteorological effects can, however, differ largely given the odds in the driving models, the underlying surface models and the urban canopy parameterizations, representing a certain uncertainty. In this study we try to contribute to the estimation of this uncertainty by performing numerous experiments to assess the urban canopy meteorological forcing over central Europe on climate for the decade 2001-2010, using two driving models (RegCM4 and WRF) in 10 km resolution driven by ERA-Interim reanalyses, three surface schemes (BATS and CLM4.5 for RegCM4 and Noah for WRF) and five urban canopy parameterizations available: one bulk urban scheme, three single layer and a multilayer urban scheme. Actually, in RegCM4 we used our implementation of the Single Layer Urban Canopy Model (SLUCM) in BATS scheme and CLM4.5 option with urban parameterization based on SLUCM concept as well, in WRF we used all the three options, i.e. bulk, SLUCM and more complex and sophisticated Building Environment Parameterization (BEP) connected with Building Energy Model (BEM). As a reference simulations, runs with no urban areas and with no urban parameterizations were performed. Effects of cities on urban and rural areas were evaluated. Effect of reducing diurnal temperature range in cities (around 2 °C in summer) is noticeable in all simulation, independent to urban parameterization type and model. Also well-known warmer summer city nights appear in all simulations. Further, winter boundary layer increase by 100-200 m, together with wind reduction, is visible in all simulations. The spatial distribution of the night-time temperature response of models to urban canopy forcing is rather similar in each set-up, showing temperature increases up to 3°C in summer. In general, much lower increase are modeled for day-time conditions, which can be even slightly negative due to dominance of shadowing in urban canyons, especially in the morning hours. The winter temperature response, driven mainly by anthropogenic heat (AH) is strong in urban schemes where the building-street energy exchange is more resolved and is smaller, where AH is simply prescribed as additive flux to the sensible heat. Somewhat larger differences between the models are encountered for the response of wind and the height of planetary boundary layer (ZPBL), with dominant increases from a few 10 m up to 250 m depending on the model. The comparison of observation of diurnal temperature amplitude from ECAD data with model results and hourly data from Prague with model hourly values show improvement when urban effects are considered. Larger spread encountered for wind and turbulence (as ZPBL) should be considered when choices of urban canopy schemes are made, especially in connection with modeling transport of pollutants within/from cities. Another conclusion is that choosing more complex urban schemes does not necessary improves model performance and using simpler and computationally less demanding (e.g. single layer) urban schemes, is often sufficient.

Estimation of Boreal Forest Biomass Using Spaceborne SAR Systems

NASA Technical Reports Server (NTRS)

Saatchi, Sassan; Moghaddam, Mahta

1995-01-01

In this paper, we report on the use of a semiempirical algorithm derived from a two layer radar backscatter model for forest canopies. The model stratifies the forest canopy into crown and stem layers, separates the structural and biometric attributes of the canopy. The structural parameters are estimated by training the model with polarimetric SAR (synthetic aperture radar) data acquired over homogeneous stands with known above ground biomass. Given the structural parameters, the semi-empirical algorithm has four remaining parameters, crown biomass, stem biomass, surface soil moisture, and surface rms height that can be estimated by at least four independent SAR measurements. The algorithm has been used to generate biomass maps over the entire images acquired by JPL AIRSAR and SIR-C SAR systems. The semi-empirical algorithms are then modified to be used by single frequency radar systems such as ERS-1, JERS-1, and Radarsat. The accuracy. of biomass estimation from single channel radars is compared with the case when the channels are used together in synergism or in a polarimetric system.

Atmospheric surface and boundary layers of the Amazon Basin

NASA Technical Reports Server (NTRS)

Garstang, Michael

1987-01-01

Three phases of work were performed: design of and preparation for the Amazon Boundary Layer Experiment (ABLE 2-A); execution of the ABLE 2-A field program; and analysis of the ABLE 2-A data. Three areas of experiment design were dealt with: surface based meteorological measurements; aircraft missions; and project meteorological support. The primary goal was to obtain a good description of the structure of the atmosphere immediately above the rain forest canopy (top of canopy to a few thousand meters), to describe this region during the growing daytime phase of the boundary layer; and to examine the nighttime stratified state. A secondary objective was to examine the role that deep convective storms play in the vertical transport of heat, water vapor, and other trace gases. While significant progress was made, much of the analysis remains to be done.

Bio-inspired canopies for the reduction of roughness noise

NASA Astrophysics Data System (ADS)

Clark, Ian A.; Daly, Conor A.; Devenport, William; Alexander, W. Nathan; Peake, Nigel; Jaworski, Justin W.; Glegg, Stewart

2016-12-01

This work takes inspiration from the structure of the down covering the flight feathers of larger species of owls, which contributes to their ability to fly almost silently at frequencies above 1.6 kHz. Microscope photographs of the down show that it consists of hairs that form a structure similar to that of a forest. The hairs initially rise almost perpendicular to the feather surface but then bend over in the flow direction to form a canopy with an open area ratio of about 70 percent. Experiments have been performed to examine the noise radiated by a large open area ratio canopy suspended above a surface. The canopy is found to dramatically reduce pressure fluctuations on the underlying surface. While the canopy can produce its own sound, particularly at high frequencies, the reduction in surface pressure fluctuations can reduce the noise scattered from an underlying rough surface at lower frequencies. A theoretical model is developed which characterizes the mechanism of surface pressure reduction as a result of the mixing layer instability of flow over forest canopies.

Impact of implementation of spaceborne lidar-retrieved canopy height in the WRF model

NASA Astrophysics Data System (ADS)

Lee, Junhong; Hong, Jinkyu

2017-04-01

Canopy height is closely related to biomass and aerodynamic properties, which regulate turbulent transfer of energy and mass at the soil-vegetation-atmosphere continuum. However, this key information has been prescribed as a constant value in a fixed plant functional type in atmospheric models. This presentation reports impacts of using realistic forest canopy height, retrieved from spaceborne LiDAR, on regional climate simulation in the Weather Research and Forecasting (WRF) model's land surface model. Numerical simulations were conducted over the Amazon Basin and East Asia during summer season. Over these regions, the LiDAR-retrieved canopy heights were higher than the default values used in the WRF,which are dependent only on plant functional type. By modifying roughness length and zero-plane displacement height, the change of canopy height resulted in changes in surface energy balance by regulating aerodynamic conductances and vertical temperature gradient, thus modifying the lifting condensation level and equivalent potential temperature in the atmospheric boundary layer. Our analysis also showed that the WRF model better reproduced the observed precipitation when LiDAR-retrieved canopy height was used over the Amazon Basin.

Modeling Coherent Structures in Canopy Flows

NASA Astrophysics Data System (ADS)

Luhar, Mitul

2017-11-01

It is well known that flows over vegetation canopies are characterized by the presence of energetic coherent structures. Since the mean profile over dense canopies exhibits an inflection point, the emergence of such structures is often attributed to a Kelvin-Helmholtz instability. However, though stability analyses provide useful mechanistic insights into canopy flows, they are limited in their ability to generate predictions for spectra and coherent structure. The present effort seeks to address this limitation by extending the resolvent formulation (McKeon and Sharma, 2010, J. Fluid Mech.) to canopy flows. Under the resolvent formulation, the turbulent velocity field is expressed as a superposition of propagating modes, identified via a gain-based (singular value) decomposition of the Navier-Stokes equations. A key advantage of this approach is that it reconciles multiple mechanisms that lead to high amplification in turbulent flows, including modal instability, transient growth, and critical-layer phenomena. Further, individual high-gain modes can be combined to generate more complete models for coherent structure and velocity spectra. Preliminary resolvent-based model predictions for canopy flows agree well with existing experiments and simulations.

Large-eddy simulation of slope flow over and within a vegetation canopy

NASA Astrophysics Data System (ADS)

Li, W.; Katul, G. G.; Parlange, M. B.; Giometto, M. G.

2017-12-01

Large-eddy simulation is used to characterize the turbulent structure of katabatic flows interacting with vegetation canopies in the absence of rotation. Numerical experiments are conducted first considering homogeneous surface forcing over an infinite planar slope, resembling the settings of the classic Prandtl one-dimensional slope flow model. A series of homogeneous plant canopies are accounted for using a spatially-distributed drag and buoyancy-induced forces, both function of the canopy leaf-area density parameter. The current study provides a new perspective on the problem of canopy flows, whose numerical studies have to-date mostly focused on pressure-driven atmospheric boundary-layer flow settings or on complex topography but without buoyancy. The dependence of the solution to the grid stencil, subgrid-scale model, and domain size will be analyzed, to assess the quality and reliability of the proposed results. A sensitivity analysis will then be conducted to test the dependence of mean flow and turbulence to the model parameters. Results will be contrasted with those from corresponding runs with no vegetation canopy.

High within-canopy variation in isoprene emission potentials in temperate trees: Implications for predicting canopy-scale isoprene fluxes

NASA Astrophysics Data System (ADS)

Niinemets, ÜLo; Copolovici, Lucian; Hüve, Katja

2010-12-01

Isoprene emission potential (ES) varies in tree canopies, and such variations have potentially major implications for predicting canopy level emissions. So far, quantitative relationships of ES with irradiance are missing, and interspecific variation in ES plasticity and potential effects on canopy level emissions have not been characterized. ES, foliage structural, chemical, and photosynthetic characteristics were studied relative to integrated within-canopy daily quantum flux density (Qint) in temperate deciduous tree species Quercus robur, Populus tremula, Salix alba, and Salix caprea, and canopy isoprene emissions were calculated considering observed variation in ES and under different simplifying assumptions. Strong positive curvilinear relationships between nitrogen and dry mass per unit area, photosynthetic potentials and ES per area with Qint were observed. Structural, chemical, and photosynthetic traits varied 1.5-fold to 4-fold and ES per area 3-fold to 27-fold within the canopy. ES variation reflected accumulation of mesophyll cell layers and greater emission capacity of average cells. Species with largest structural and photosynthetic plasticity had greatest plasticity in ES. Relative to the simulation considering within-canopy variation in ES, the bias from assuming a constant ES varied between -8% and +68%, and it scaled positively with ES plasticity. The bias of big-leaf simulations varied between -22% and -35%, and it scaled negatively with ES plasticity. A generalized canopy response function of ES developed for all species resulted in the lowest bias between -11% and 6% and can be recommended for practical applications. The results highlight huge within-canopy and interspecific variation in ES and demonstrate that ignoring these variations strongly biases canopy emission predictions.

Vertical Structure of Phyllosphere Fungal Communities in a Tropical Forest in Thailand Uncovered by High-Throughput Sequencing.

PubMed

Izuno, Ayako; Kanzaki, Mamoru; Artchawakom, Taksin; Wachrinrat, Chongrak; Isagi, Yuji

2016-01-01

Phyllosphere fungi harbor a tremendous species diversity and play important ecological roles. However, little is known about their distribution patterns within forest ecosystems. We examined how species diversity and community composition of phyllosphere fungi change along a vertical structure in a tropical forest in Thailand. Fungal communities in 144 leaf samples from 19 vertical layers (1.28-34.4 m above ground) of 73 plant individuals (27 species) were investigated by metabarcoding analysis using Ion Torrent sequencing. In total, 1,524 fungal operational taxonomic units (OTUs) were detected among 890,710 reads obtained from the 144 leaf samples. Taxonomically diverse fungi belonging to as many as 24 orders of Ascomycota and 21 orders of Basidiomycota were detected, most of which inhabited limited parts of the lowest layers closest to the forest floor. Species diversity of phyllosphere fungi was the highest in the lowest layers closest to the forest floor, decreased with increasing height, and lowest in the canopy; 742 and 55 fungal OTUs were detected at the lowest and highest layer, respectively. On the layers close to the forest floor, phyllosphere fungal communities were mainly composed of low frequency OTUs and largely differentiated among plant individuals. Conversely, in the canopy, fungal communities consisted of similar OTUs across plant individuals, and as many as 86.1%-92.7% of the OTUs found in the canopy (≥22 m above ground) were also distributed in the lower layers. Overall, our study showed the variability of phyllosphere fungal communities along the vertical gradient of plant vegetation and environmental conditions, suggesting the significance of biotic and abiotic variation for the species diversity of phyllosphere fungi.

How might Australian rainforest cloud interception respond to climate change?

NASA Astrophysics Data System (ADS)

Wallace, Jim; McJannet, Dave

2013-02-01

SummaryThe lower and upper montane rainforests in northern Queensland receive significant amounts of cloud interception that affect both in situ canopy wetness and downstream runoff. Cloud interception contributes 5-30% of the annual water input to the canopy and this increases to 40-70% of the monthly water input during the dry season. This occult water is therefore an important input to the canopy, sustaining the epiphytes, mosses and other species that depend on wet canopy conditions. The potential effect of climate change on cloud interception was examined using the relationship between cloud interception and cloud frequency derived from measurements made at four different rainforest locations. Any given change in cloud frequency produces a greater change in cloud interception and this 'amplification' increases from 1.1 to 1.7 as cloud frequency increases from 5% to 70%. This means that any changes in cloud frequency will have the greatest relative effects at the higher altitude sites where cloud interception is greatest. As cloud frequency is also a major factor affecting canopy wetness, any given change in cloud frequency will therefore have a greater impact on canopy wetness at the higher altitude sites. These changes in wetness duration will augment those due to changes in rainfall and may have important implications for the fauna and flora that depend on wet canopy conditions. We also found that the Australian rainforests may be more efficient (by ˜50% on average) in intercepting cloud water than American coniferous forests, which may be due to differences in canopy structure and exposure at the different sites.

Relationship Between Remotely-sensed Vegetation Indices, Canopy Attributes and Plant Physiological Processes: What Vegetation Indices Can and Cannot Tell Us About the Landscape.

PubMed

Glenn, Edward P; Huete, Alfredo R; Nagler, Pamela L; Nelson, Stephen G

2008-03-28

Vegetation indices (VIs) are among the oldest tools in remote sensing studies. Although many variations exist, most of them ratio the reflection of light in the red and NIR sections of the spectrum to separate the landscape into water, soil, and vegetation. Theoretical analyses and field studies have shown that VIs are near-linearly related to photosynthetically active radiation absorbed by a plant canopy, and therefore to light-dependent physiological processes, such as photosynthesis, occurring in the upper canopy. Practical studies have used time-series VIs to measure primary production and evapotranspiration, but these are limited in accuracy to that of the data used in ground truthing or calibrating the models used. VIs are also used to estimate a wide variety of other canopy attributes that are used in Soil-Vegetation-Atmosphere Transfer (SVAT), Surface Energy Balance (SEB), and Global Climate Models (GCM). These attributes include fractional vegetation cover, leaf area index, roughness lengths for turbulent transfer, emissivity and albedo. However, VIs often exhibit only moderate, non-linear relationships to these canopy attributes, compromising the accuracy of the models. We use case studies to illustrate the use and misuse of VIs, and argue for using VIs most simply as a measurement of canopy light absorption rather than as a surrogate for detailed features of canopy architecture. Used this way, VIs are compatible with "Big Leaf" SVAT and GCMs that assume that canopy carbon and moisture fluxes have the same relative response to the environment as any single leaf, simplifying the task of modeling complex landscapes.

The impact of in-canopy wind profile formulations on heat flux estimation in an open orchard using the remote sensing-based two-source model

NASA Astrophysics Data System (ADS)

Cammalleri, C.; Anderson, M. C.; Ciraolo, G.; Durso, G.; Kustas, W. P.; La Loggia, G.; Minacapilli, M.

2010-12-01

For open orchard and vineyard canopies containing significant fractions of exposed soil (>50%), typical of Mediterranean agricultural regions, the energy balance of the vegetation elements is strongly influenced by heat exchange with the bare soil/substrate. For these agricultural systems a "two-source" approach, where radiation and turbulent exchange between the soil and canopy elements are explicitly modelled, appears to be the only suitable methodology for reliably assessing energy fluxes. In strongly clumped canopies, the effective wind speed profile inside and below the canopy layer can strongly influence the partitioning of energy fluxes between the soil and vegetation components. To assess the impact of in-canopy wind profile on model flux estimates, an analysis of three different formulations is presented, including algorithms from Goudriaan (1977), Massman (1987) and Lalic et al. (2003). The in-canopy wind profile formulations are applied to the thermal-based two-source energy balance (TSEB) model developed by Norman et al. (1995) and modified by Kustas and Norman (1999). High resolution airborne remote sensing images, collected over an agricultural area located in the western part of Sicily (Italy) comprised primarily of vineyards, olive and citrus orchards, are used to derive all the input parameters needed to apply the TSEB. The images were acquired from June to October 2008 and include a relatively wide range of meteorological and soil moisture conditions. A preliminary sensitivity analysis of the three wind profile algorithms highlights the dependence of wind speed just above the soil/substrate to leaf area index and canopy height over the typical range of canopy properties encountered in these agricultural areas. It is found that differences among the models in wind just above the soil surface are most significant under sparse and medium fractional cover conditions (15-50%). The TSEB model heat flux estimates are compared with micro-meteorological measurements from a small aperture scintillometer and an eddy covariance tower collected over an olive orchard characterized by moderate fractional vegetation cover (≍35%) and relatively tall crop (≍3.5 m). TSEB fluxes for the 7 image acquisition dates generated using both the Massman and Goudriaan in-canopy wind profile formulations give close agreement with measured fluxes, while the Lalic et al. equations yield poor results. The Massman wind profile scheme slightly outperforms that of Goudriaan, but it requires an additional parameter accounting for the roughness sub-layer of the underlying vegetative surface. The analysis also suggests that within-canopy wind profile model discrepancies become important, in terms of impact on modelled sensible heat flux, only for sparse canopies with moderate vegetation coverage.

Mapping the understorey of deciduous woodland from leaf-on and leaf-off airborne LiDAR data: A case study in lowland Britain

NASA Astrophysics Data System (ADS)

Hill, R. A.; Broughton, R. K.

This study examines the understorey information present in discrete-return LiDAR (Light Detection And Ranging) data acquired for temperate deciduous woodland in mid summer (leaf-on) and in early spring when the understorey had mostly leafed out, but the overstorey had only just begun budburst (referred to here as leaf-off). The woodland is ancient, semi-natural broadleaf and has a heterogeneous structure with a mostly closed canopy overstorey and a patchy understorey layer. In this study, the understorey was defined as suppressed trees and shrubs growing beneath an overstorey canopy. Forest mensuration data for the study site were examined to identify thresholds (taking the 95th percentile) for crown depth as a percentage of crown top height for the six overstorey tree species present. These data were used in association with a digital tree species map and leaf-on first return LiDAR data, to identify the possible depth of space available below the overstorey canopy in which an understorey layer could exist. The leaf-off last return LiDAR data were then examined to identify whether they contained information on where this space was occupied by suppressed trees or shrubs forming an understorey. Thus, understorey was mapped from the leaf-off last return data where the height was below the predicted crown depth. A height threshold of 1 m was applied to separate the ground vegetation layer from the understorey. The derived understorey model formed a discontinuous layer covering 46.4 ha (or 31% of the study site), with an average height of 2.64 m and a 77% correspondence with field data on the presence/absence of suppressed trees and shrubs (kappa 0.53). Because the first return data in leaf-on and leaf-off conditions were very similar (differing by an average of just 0.87 m), it was also possible to map the understorey layer using leaf-off data alone. The resultant understorey model covered 39.4 ha (or 26% of the study site), and had a 72% correspondence with field data on the presence/absence of suppressed trees and shrubs (kappa 0.45). This moderate reduction in the area of understorey mapped and associated accuracy came with a saving of half of all data acquisition and pre-processing costs. Whilst the understorey modelling presented here undoubtedly benefited from the specific timing of LiDAR data acquisition and from ancillary data available for the study site, the conclusions have resonance beyond this case study. Given that the understorey and overstorey canopies in lowland broadleaf woodland can merge into one another, the modelling of understorey information from discrete-return LiDAR data must consider overstorey canopy characteristics and laser penetration through the overstorey. It is not adequate in such circumstances to apply simple height thresholds to LiDAR height frequency distributions, as this is unlikely to distinguish whether a return has backscattered from the lower parts of the overstorey canopy or from near the surface of the understorey canopy.

Height is more important than light in determining leaf morphology in a tropical forest.

PubMed

Cavaleri, Molly A; Oberbauer, Steven F; Clark, David B; Clark, Deborah A; Ryan, Michael G

2010-06-01

Both within and between species, leaf physiological parameters are strongly related to leaf dry mass per area (LMA, g/m2), which has been found to increase from forest floor to canopy top in every forest where it has been measured. Although vertical LMA gradients in forests have historically been attributed to a direct phenotypic response to light, an increasing number of recent studies have provided evidence that water limitation in the upper canopy can constrain foliar morphological adaptations to higher light levels. We measured height, light, and LMA of all species encountered along 45 vertical canopy transects across a Costa Rican tropical rain forest. LMA was correlated with light levels in the lower canopy until approximately 18 m sample height and 22% diffuse transmittance. Height showed a remarkably linear relationship with LMA throughout the entire vertical canopy profile for all species pooled and for each functional group individually (except epiphytes), possibly through the influence of gravity on leaf water potential and turgor pressure. Models of forest function may be greatly simplified by estimating LMA-correlated leaf physiological parameters solely from foliage height profiles, which in turn can be assessed with satellite- and aircraft-based remote sensing.

Wood properties and trunk allometry of co-occurring rainforest canopy trees in a cyclone-prone environment.

PubMed

Read, Jennifer; Evans, Robert; Sanson, Gordon D; Kerr, Stuart; Jaffré, Tanguy

2011-11-01

New Caledonia commonly experiences cyclones, so trees there are expected to have enhanced wood traits and trunk allometry that confer resistance to wind damage. We ask whether there is evidence of a trade-off between these traits and growth rate among species. Wood traits, including density, microfibril angle (MFA), and modulus of elasticity (MOE), ratio of tree height to stem diameter, and growth rate were investigated in mature trees of 15 co-occurring canopy species in a New Caledonian rainforest. In contrast to some studies, wood density did not correlate negatively with growth increment. Among angiosperms, wood density and MOE correlated positively with diameter-adjusted tree height, and MOE correlated positively with stem-diameter growth increment. Tall slender trees achieved high stiffness with high efficiency with respect to wood density, in part by low MFA, and with a higher diameter growth increment but a lower buckling safety factor. However, some tree species of a similar niche differed in whole-tree resistance to wind damage and achieved wood stiffness in different ways. There was no evidence of a growth-safety trade-off in these trees. In forests that regularly experience cyclones, there may be stronger selection for high wood density and/or stiffness in fast-growing trees of the upper canopy, with the potential growth trade-off amortized by access to the upper canopy and by other plant traits. Furthermore, decreasing wood density does not necessarily decrease resistance to wind damage, resistance being influenced by other characteristics including cell-level traits (e.g., MFA) and whole-plant architecture.

Effects of branch height on leaf gas exchange, branch hydraulic conductance and branch sap flux in open-grown ponderosa pine.

PubMed

Hubbard, Robert M; Bond, Barbara J; Senock, Randy S; Ryan, Michael G

2002-06-01

Recent studies have shown that stomata respond to changes in hydraulic conductance of the flow path from soil to leaf. In open-grown tall trees, branches of different heights may have different hydraulic conductances because of differences in path length and growth. We determined if leaf gas exchange, branch sap flux, leaf specific hydraulic conductance, foliar carbon isotope composition (delta13C) and ratios of leaf area to sapwood area within branches were dependent on branch height (10 and 25 m) within the crowns of four open-grown ponderosa pine (Pinus ponderosa Laws.) trees. We found no difference in leaf gas exchange or leaf specific hydraulic conductance from soil to leaf between the upper and lower canopy of our study trees. Branch sap flux per unit leaf area and per unit sapwood area did not differ between the 10- and 25-m canopy positions; however, branch sap flux per unit sapwood area at the 25-m position had consistently lower values. Branches at the 25-m canopy position had lower leaf to sapwood area ratios (0.17 m2 cm-2) compared with branches at the 10-m position (0.27 m2 cm-2) (P = 0.03). Leaf specific conductance of branches in the upper crown did not differ from that in the lower crown. Other studies at our site indicate lower hydraulic conductance, sap flux, whole-tree canopy conductance and photosynthesis in old trees compared with young trees. This study suggests that height alone may not explain these differences.

Experimental Study of Aligned and Staggered Wind Farms in a Convective Boundary Layer

NASA Astrophysics Data System (ADS)

Markfort, Corey; Zhang, Wei; Porte-Agel, Fernando

2011-11-01

Wind farm-atmosphere interaction is complicated by turbine configuration and thermal effects on momentum and kinetic energy fluxes. Wind farms of finite length have been modeled as increased surface roughness or as a sparse canopy; however it is not clear which approach is more appropriate. Experiments were conducted in a thermally controlled boundary layer wind tunnel, using a custom x-wire/cold wire and surface heat flux sensors, to understand the effect of aligned versus staggered turbine configurations on momentum absorption and flow adjustment in a convective boundary layer (CBL). Results for experiments of a large farm show the span-wise averaged flow statistics exhibit similar turbulent transport properties to that of canopy flows. The wake adjusts within and grows over the farm more quickly for a staggered compared to an aligned farm. Using canopy flow scaling, we show that the flow equilibrates faster and the overall momentum absorption is higher in a staggered compared to an aligned farm. Wake recovery behind a single turbine is facilitated by buoyancy in a CBL (Zhang et al. under review). We find a similar effect in wind farms resulting in reduced effective roughness and momentum absorption. We also find a reduction of surface heat flux for both wind farms, but greater for the staggered farm.

Coupled carbon-water exchange of the Amazon rain forest, II. Comparison of predicted and observed seasonal exchange of energy, CO2, isoprene and ozone at a remote site in Rondônia

NASA Astrophysics Data System (ADS)

Simon, E.; Meixner, F. X.; Rummel, U.; Ganzeveld, L.; Ammann, C.; Kesselmeier, J.

2005-10-01

A one-dimensional multi-layer scheme describing the coupled exchange of energy and CO2, the emission of isoprene and the dry deposition of ozone is applied to a rain forest canopy in southwest Amazonia. The model was constrained using mean diel cycles of micrometeorological quantities observed during two periods in the wet and dry season 1999. Calculated net fluxes and concentration profiles for both seasonal periods are compared to observations made at two nearby towers.

The modeled day- and nighttime thermal stratification of the canopy layer is consistent with observations in dense canopies. The observed and modeled net fluxes above and H2O and CO2 concentration profiles within the canopy show a good agreement. The predicted net carbon sink decreases from 2.5 t C ha-1 yr-1 for wet season conditions to 1 t C ha-1 yr-1 for dry season conditions, whereas observed and modeled midday Bowen ratio increases from 0.5 to 0.8. The evaluation results confirmed a seasonal variability of leaf physiological parameters, as already suggested in a companion study. The calculated midday canopy net flux of isoprene increased from 7.1 mg C m-2 h-1 during the wet season to 11.4 mg C m-2 h-1 during the late dry season. Applying a constant emission capacity in all canopy layers, resulted in a disagreement between observed and simulated profiles of isoprene concentrations, suggesting a smaller emission capacity of shade adapted leaves and deposition to the soil or leaf surfaces. Assuming a strong light acclimation of emission capacity, equivalent to a 66% reduction of the standard emission factor for leaves in the lower canopy, resulted in a better agreement of observed and modeled concentration profiles and a 30% reduction of the canopy net flux compared to model calculations with a constant emission factor. The mean calculated ozone flux for dry season conditions at noontime was ≍12 n mol m-2 s-1, agreeing well with observed values. The corresponding deposition velocity increased from 0.8 cm s-1 to >1.6 cm s-1 in the wet season, which can not be explained by increased stomatal uptake. Considering reasonable physiological changes in stomatal regulation, the modeled value was not larger than 1.05 cm s-1. Instead, the observed fluxes could be explained with the model by decreasing the cuticular resistance to ozone deposition from 5000 to 1000 s m-1.

Aerosol fluxes and dynamics within and above a tropical rainforest in South-East Asia

NASA Astrophysics Data System (ADS)

Whitehead, J. D.; Gallagher, M. W.; Dorsey, J. R.; Robinson, N.; Gabey, A. M.; Coe, H.; McFiggans, G.; Flynn, M. J.; Ryder, J.; Nemitz, E.; Davies, F.

2010-10-01

Atmospheric aerosol measurements were conducted near Danum Valley, in the Malaysian state of Sabah, North-East Borneo, as part of the OP3 and ACES projects, in April and June/July 2008. Here, aerosol fluxes and diurnal variability in and above the rainforest canopy were examined in order to gain an understanding of their behaviour in the surface layer of the South-East Asian rainforest. Aerosol fluxes were calculated by eddy covariance from measurements above the rainforest canopy on the Global Atmosphere Watch (GAW) tower. Upward fluxes were seen on most mornings between 09:00 and 11:00 local time and this could be attributed to venting of the nocturnal boundary layer as it broke up in the morning. Measurements were also conducted within the canopy and trunk space at a nearby site. Profiles in aerosol number concentrations were investigated using GRIMM Optical Particle Counters (OPCs) at various levels within the rainforest canopy and trunk space, as well as a single OPC on a vertically moving platform. These showed an overnight increase in larger particles (1-20 μm) at all levels, but much more prominently near the top of the canopy, which could be attributed to fog formation. At ground level, number concentrations in this size range correlated with enhancements in biological aerosol concentrations, measured using a Wide Issue Bioaerosol Spectrometer (WIBS) located near the forest floor, suggesting that coarse particle number concentrations were dominated by biological aerosols. A comparison of particle number concentrations (in the size range 0.5-1.0 μm) between above canopy and the trunk space showed correlations, despite turbulence data suggesting persistent decoupling between the two measurement sites. These correlations often relied on a shift of the particle time-series against each other, implying a time delay in observations between the sites, which varied according to time of day. This lag time was shortest during the middle of the day by a significant margin. This was not observed for aerosols larger than 1.0 μm. Further evidence of daytime coupling between above canopy and the trunk space in terms of aerosol measurements is implied by comparison of measurements from an Aerosol Mass Spectrometer (AMS) at the GAW tower and simultaneous bag sampling at the in-canopy site, subsequently analysed with the AMS. Transport of particles through the canopy seems to occur through large-scale, sporadic turbulent events, suggesting that the coupling between the canopy space and the air above is due to these ventilation events.

A New Scheme for the Simulation of Microscale Flow and Dispersion in Urban Areas by Coupling Large-Eddy Simulation with Mesoscale Models

NASA Astrophysics Data System (ADS)

Li, Haifeng; Cui, Guixiang; Zhang, Zhaoshun

2018-04-01

A coupling scheme is proposed for the simulation of microscale flow and dispersion in which both the mesoscale field and small-scale turbulence are specified at the boundary of a microscale model. The small-scale turbulence is obtained individually in the inner and outer layers by the transformation of pre-computed databases, and then combined in a weighted sum. Validation of the results of a flow over a cluster of model buildings shows that the inner- and outer-layer transition height should be located in the roughness sublayer. Both the new scheme and the previous scheme are applied in the simulation of the flow over the central business district of Oklahoma City (a point source during intensive observation period 3 of the Joint Urban 2003 experimental campaign), with results showing that the wind speed is well predicted in the canopy layer. Compared with the previous scheme, the new scheme improves the prediction of the wind direction and turbulent kinetic energy (TKE) in the canopy layer. The flow field influences the scalar plume in two ways, i.e. the averaged flow field determines the advective flux and the TKE field determines the turbulent flux. Thus, the mean, root-mean-square and maximum of the concentration agree better with the observations with the new scheme. These results indicate that the new scheme is an effective means of simulating the complex flow and dispersion in urban canopies.

Vertical leaf mass per area gradient of mature sugar maple reflects both height-driven increases in vascular tissue and light-driven increases in palisade layer thickness.

PubMed

Coble, Adam P; Cavaleri, Molly A

2017-10-01

A key trait used in canopy and ecosystem function modeling, leaf mass per area (LMA), is influenced by changes in both leaf thickness and leaf density (LMA = Thickness × Density). In tall trees, LMA is understood to increase with height through two primary mechanisms: (i) increasing palisade layer thickness (and thus leaf thickness) in response to light and/or (ii) reduced cell expansion and intercellular air space in response to hydrostatic constraints, leading to increased leaf density. Our objective was to investigate within-canopy gradients in leaf anatomical traits in order to understand environmental factors that influence leaf morphology in a sugar maple (Acer saccharum Marshall) forest canopy. We teased apart the effects of light and height on anatomical traits by sampling at exposed and closed canopies that had different light conditions at similar heights. As expected, palisade layer thickness responded strongly to cumulative light exposure. Mesophyll porosity, however, was weakly and negatively correlated with light and height (i.e., hydrostatic gradients). Reduced mesophyll porosity was not likely caused by limitations on cell expansion; in fact, epidermal cell width increased with height. Palisade layer thickness was better related to LMA, leaf density and leaf thickness than was mesophyll porosity. Vein diameter and fraction of vascular tissue also increased with height and LMA, density and thickness, revealing that greater investment in vascular and support tissue may be a third mechanism for increased LMA with height. Overall, decreasing mesophyll porosity with height was likely due to palisade cells expanding into the available air space and also greater investments in vascular and support tissue, rather than a reduction of cell expansion due to hydrostatic constraints. Our results provide evidence that light influences both palisade layer thickness and mesophyll porosity and indicate that hydrostatic gradients influence leaf vascular and support tissues in mature Acer saccharum trees. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Opposing effects of fire severity on climate feedbacks in Siberian larch forests

NASA Astrophysics Data System (ADS)

Loranty, M. M.; Alexander, H. D.; Natali, S.; Kropp, H.; Mack, M. C.; Bunn, A. G.; Davydov, S. P.; Erb, A.; Kholodov, A. L.; Schaaf, C.; Wang, Z.; Zimov, N.; Zimov, S. A.

2017-12-01

Boreal larch forests in northeastern Siberia comprise nearly 25% of the continuous permafrost zone. Structural and functional changes in these ecosystems will have important climate feedbacks at regional and global scales. Like boreal ecosystems in North America, fire is an important determinant of landscape scale forest distribution, and fire regimes are intensifying as climate warms. In Siberian larch forests are dominated by a single tree species, and there is evidence that fire severity influences post-fire forest density via impacts on seedling establishment. The extent to which these effects occur, or persist, and the associated climate feedbacks are not well quantified. In this study we use forest stand inventories, in situ observations, and satellite remote sensing to examine: 1) variation in forest density within and between fire scars, and 2) changes in land surface albedo and active layer dynamics associated with forest density variation. At the landscape scale we observed declines in Landsat derived albedo as forests recovered in the first several decades after fire, though canopy cover varied widely within and between individual fire scars. Within an individual mid-successional fire scar ( 75 years) we observed canopy cover ranging from 15-90% with correspondingly large ranges of albedo during periods of snow cover, and relatively small differences in albedo during the growing season. We found an inverse relationship between canopy density and soil temperature within this fire scar; high-density low-albedo stands had cooler soils and shallower active layers, while low-density stands had warmer soils and deeper active layers. Intensive energy balance measurements at a high- and low- density site show that canopy cover alters the magnitude and timing of ground heat fluxes that affect active layer properties. Our results show that fire impacts on stand structure in Siberian larch forests affect land surface albedo and active layer dynamics in ways that may lead to opposing climate feedbacks. At effectively large scales these changes constitute positive and negative climate feedbacks, respectively. Accurate predictive understanding of terrestrial Arctic climate feedbacks requires improved knowledge regarding the ecological consequences of changing fire regimes in Siberian boreal forests.

Control methods for merging ALSM and ground-based laser point clouds acquired under forest canopies

NASA Astrophysics Data System (ADS)

Slatton, Kenneth C.; Coleman, Matt; Carter, William E.; Shrestha, Ramesh L.; Sartori, Michael

2004-12-01

Merging of point data acquired from ground-based and airborne scanning laser rangers has been demonstrated for cases in which a common set of targets can be readily located in both data sets. However, direct merging of point data was not generally possible if the two data sets did not share common targets. This is often the case for ranging measurements acquired in forest canopies, where airborne systems image the canopy crowns well, but receive a relatively sparse set of points from the ground and understory. Conversely, ground-based scans of the understory do not generally sample the upper canopy. An experiment was conducted to establish a viable procedure for acquiring and georeferencing laser ranging data underneath a forest canopy. Once georeferenced, the ground-based data points can be merged with airborne points even in cases where no natural targets are common to both data sets. Two ground-based laser scans are merged and georeferenced with a final absolute error in the target locations of less than 10cm. This is comparable to the accuracy of the georeferenced airborne data. Thus, merging of the georeferenced ground-based and airborne data should be feasible. The motivation for this investigation is to facilitate a thorough characterization of airborne laser ranging phenomenology over forested terrain as a function of vertical location in the canopy.

Behavioral activities of male Cerulean Warblers in relation to habitat characteristics

USGS Publications Warehouse

Wood, Petra Bohall; Perkins, Kelly A.

2012-01-01

Activities of 29 male Cerulean Warblers (Setophaga cerulea) were quantified on two sites in West Virginia during May–June 2005. Singing and foraging were the most common of 11 observed behavioral activities (81.6%), while maintenance and mating behaviors were uncommonly observed. Male activity differed among vegetative strata (P  =  0.02) with lower- and mid-canopy strata used most often (70% of observations), especially for foraging, perching, and preening. The upper-canopy was used primarily for singing, particularly within core areas of territories and in association with canopy gaps. Foraging occurred more than expected outside of core areas. Males were associated with canopy gaps during 30% of observations, but the distribution of behavioral activities was not significantly related (P  =  0.06) to gap presence. Males used 23 different tree species for a variety of activities with oaks (Quercus spp.) used most often on the xeric site and black cherry (Prunus serotina) and black locust (Robinia pseudoacacia) on the mesic site. Tree species used for singing differed between core and non-core areas (P < 0.0001) but distribution of singing and foraging activity did not differ among tree species (P  =  0.13). Cerulean Warblers appear to be flexible in use of tree species. Their use of different canopy strata for different behavioral activities provides an explanation for the affinity this species exhibits for a vertically stratified forest canopy.

Classification of Snowfall Events and Their Effect on Canopy Interception Efficiency in a Temperate Montane Forest.

NASA Astrophysics Data System (ADS)

Roth, T. R.; Nolin, A. W.

2015-12-01

Forest canopies intercept as much as 60% of snowfall in maritime environments, while processes of sublimation and melt can reduce the amount of snow transferred from the canopy to the ground. This research examines canopy interception efficiency (CIE) as a function of forest and event-scale snowfall characteristics. We use a 4-year dataset of continuous meteorological measurements and monthly snow surveys from the Forest Elevation Snow Transect (ForEST) network that has forested and open sites at three elevations spanning the rain-snow transition zone to the upper seasonal snow zone. Over 150 individual storms were classified by forest and storm type characteristics (e.g. forest density, vegetation type, air temperature, snowfall amount, storm duration, wind speed, and storm direction). The between-site comparisons showed that, as expected, CIE was highest for the lower elevation (warmer) sites with higher forest density compared with the higher elevation sites where storm temperatures were colder, trees were smaller and forests were less dense. Within-site comparisons based on storm type show that this classification system can be used to predict CIE.Our results suggest that the coupling of forest type and storm type information can improve estimates of canopy interception. Understanding the effects of temperature and storm type in temperate montane forests is also valuable for future estimates of canopy interception under a warming climate.

Effects of overstory retention, herbicides, and fertilization on sub-canopy vegetation structure and functional group composition in loblolly pine forests restored to longleaf pine

Treesearch

Benjamin O. Knapp; Joan L. Walker; G. Geoff Wang; Huifeng Hu; Robert N.  Addington

2014-01-01

The desirable structure of longleaf pine forests, which generally includes a relatively open canopy of pines, very few woody stems in the mid-story, and a well-developed, herbaceous ground layer, provides critical habitat for flora and fauna and contributes to ecosystem function. Current efforts to restore longleaf pine to upland sites dominated by second-growth...

On the Pollutant Plume Dispersion in the Urban Canopy Layer over 2D Idealized Street Canyons: A Large-Eddy Simulation Approach

NASA Astrophysics Data System (ADS)

Wong, Colman C. C.; Liu, Chun-Ho

2010-05-01

Anthropogenic emissions are the major sources of air pollutants in urban areas. To improve the air quality in dense and mega cities, a simple but reliable prediction method is necessary. In the last five decades, the Gaussian pollutant plume model has been widely used for the estimation of air pollutant distribution in the atmospheric boundary layer (ABL) in an operational manner. Whereas, it was originally designed for rural areas with rather open and flat terrain. The recirculating flows below the urban canopy layer substantially modify the near-ground urban wind environment and so does the pollutant distribution. Though the plume height and dispersion are often adjusted empirically, the accuracy of applying the Gaussian pollutant plume model in urban areas, of which the bottom of the flow domain consists of numerous inhomogeneous buildings, is unclear. To elucidate the flow and pollutant transport, as well as to demystify the uncertainty of employing the Gaussian pollutant plume model over urban roughness, this study was performed to examine how the Gaussian-shape pollutant plume in the urban canopy layer is modified by the idealized two-dimensional (2D) street canyons at the bottom of the ABL. The specific objective is to develop a parameterization so that the geometric effects of urban morphology on the operational pollutant plume dispersion models could be taken into account. Because atmospheric turbulence is the major means of pollutant removal from street canyons to the ABL, the large-eddy simulation (LES) was adopted to calculate explicitly the flows and pollutant transport in the urban canopy layer. The subgrid-scale (SGS) turbulent kinetic energy (TKE) conservation was used to model the SGS processes in the incompressible, isothermal conditions. The computational domain consists of 12 identical idealized street canyons of unity aspect ratio which were placed evenly in the streamwise direction. Periodic boundary conditions (BCs) for the flow were applied in the horizontal and the spanwise directions. The prevalent wind was driven by a background pressure gradient in the roughness sublayer only, no background force was prescribed inside the street canyons. While the periodic BC of pollutant was used in the spanwise direction, zero pollutant and an open BC were applied, respectively, at the inflow and outflow of the streamwise extent to avoid pollutant being reflected back into the computational domain. The ground of the first street canyon was assigned as the pollutant source on which a BC of constant pollutant concentration was prescribed. The LES results showed that, in the neutrally stratified ABL, the pollutant distribution in the urban canopy layer resembled the Gaussian plume shape in general even recirculating flows were observed in the street canyons. The roof-level horizontal profile of pollutant concentration in the streamwise direction showed that the sharp drop on the leeward side of each street canyon was likely caused by the air and pollutant entrainments. On the windward side of each street canyon, a mild increase in pollutant concentration was observed that did not follow the Gaussian plume closely. Those deviations extended to a certain height over the roof level of the street canyons. It in turn suggests that the Gaussian pollutant plume model should be applied with caution in the urban canopy layer in the vicinity over urban roughness. To further analyze the effects of urban roughness on the plume dispersion in detail, a few LES calculations with different aspect ratios are currently being undertaken so as to compare with the current LES results.

Simultaneous effects of leaf irradiance and soil moisture on growth and root system architecture of novel wheat genotypes: implications for phenotyping.

PubMed

Nagel, Kerstin A; Bonnett, David; Furbank, Robert; Walter, Achim; Schurr, Ulrich; Watt, Michelle

2015-09-01

Plants in the field are exposed to varying light and moisture. Agronomic improvement requires knowledge of whole-plant phenotypes expressed in response to simultaneous variation in these essential resources. Most phenotypes, however, have been described from experiments where resources are varied singularly. To test the importance of varying shoot and root resources for phenotyping studies, sister pre-breeding lines of wheat were phenotyped in response to independent or simultaneous exposure to two light levels and soil moisture profiles. The distribution and architecture of the root systems depended strongly on the moisture of the deeper soil layer. For one genotype, roots, specifically lateral roots, were stimulated to grow into moist soil when the upper zone was well-watered and were inhibited by drier deep zones. In contrast, the other genotype showed much less plasticity and responsiveness to upper moist soil, but maintained deeper penetration of roots into the dry layer. The sum of shoot and root responses was greater when treated simultaneously to low light and low soil water, compared to each treatment alone, suggesting the value of whole plant phenotyping in response to multiple conditions for agronomic improvement. The results suggest that canopy management for increased irradiation of leaves would encourage root growth into deeper drier soil, and that genetic variation within closely related breeding lines may exist to favour surface root growth in response to irrigation or in-season rainfall. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

INTRODUCTION OF URBAN CANOPY PARAMETERIZATION INTO MM5 TO SIMULATE URBAN METEOROLOGY AT NEIGHBORHOOD SCALE

EPA Science Inventory

Since most of the primary atmospheric pollutants are emitted inside the roughness sub-layer (RSL) and consequently the first chemical reactions and dispersion occur in this layer, it is necessary to generate detailed meteorological fields inside the RSL to perform air quality m...

Relationship Between Remotely-sensed Vegetation Indices, Canopy Attributes and Plant Physiological Processes: What Vegetation Indices Can and Cannot Tell Us About the Landscape

PubMed Central

Glenn, Edward P.; Huete, Alfredo R.; Nagler, Pamela L.; Nelson, Stephen G.

2008-01-01

Vegetation indices (VIs) are among the oldest tools in remote sensing studies. Although many variations exist, most of them ratio the reflection of light in the red and NIR sections of the spectrum to separate the landscape into water, soil, and vegetation. Theoretical analyses and field studies have shown that VIs are near-linearly related to photosynthetically active radiation absorbed by a plant canopy, and therefore to light-dependent physiological processes, such as photosynthesis, occurring in the upper canopy. Practical studies have used time-series VIs to measure primary production and evapotranspiration, but these are limited in accuracy to that of the data used in ground truthing or calibrating the models used. VIs are also used to estimate a wide variety of other canopy attributes that are used in Soil-Vegetation-Atmosphere Transfer (SVAT), Surface Energy Balance (SEB), and Global Climate Models (GCM). These attributes include fractional vegetation cover, leaf area index, roughness lengths for turbulent transfer, emissivity and albedo. However, VIs often exhibit only moderate, non-linear relationships to these canopy attributes, compromising the accuracy of the models. We use case studies to illustrate the use and misuse of VIs, and argue for using VIs most simply as a measurement of canopy light absorption rather than as a surrogate for detailed features of canopy architecture. Used this way, VIs are compatible with “Big Leaf” SVAT and GCMs that assume that canopy carbon and moisture fluxes have the same relative response to the environment as any single leaf, simplifying the task of modeling complex landscapes. PMID:27879814

Influence of Zostera marina canopies on unidirectional flow, hydraulic roughness and sediment movement

NASA Astrophysics Data System (ADS)

Lefebvre, A.; Thompson, C. E. L.; Amos, C. L.

2010-09-01

Seagrasses develop extensive or patchy underwater meadows in coastal areas around the world, forming complex, highly productive ecosystems. Seagrass canopies exert strong effects on water flow inside and around them, thereby affecting flow structure, sediment transport and benthic ecology. The influence of Zostera marina canopies on flow velocity, turbulence, hydraulic roughness and sediment movement was evaluated through laboratory experiments in 2 flumes and using live Z. marina and a mobile sand bed. Profiles of instantaneous velocities were measured and sediment movement was identified upstream, within and downstream of patches of different sizes and shoot density and at different free-stream velocities. Flow structure was characterised by time-averaged velocity, turbulence intensity and Turbulent Kinetic Energy (TKE). When velocity data were available above the canopy, they were fitted to the Law of the Wall and shear velocities and roughness lengths were calculated. When a seagrass canopy was present, three layers were distinguishable in the water column: (1) within canopy represented by low velocities and high turbulence; (2) transition zone around the height of the canopy, where velocities increased, turbulence decreased and TKE was high; and (3) above canopy where velocities were equal or higher than free-stream velocities and turbulence and TKE were lower than below. Shoot density and patch-width influenced this partitioning of the flow when the canopy was long enough (based on flume experiments, at least more than 1 m-long). The enhanced TKE observed at the canopy/water interface suggests that large-scale turbulence is generated at the canopy surface. These oscillations, likely to be related to the canopy undulations, are then broken down within the canopy and high-frequency turbulence takes place near the bed. This turbulence 'cascade' through the canopy may have an important impact on biogeochemical processes. The velocity above the canopy generally followed a logarithmic profile. Roughness lengths were higher above the canopy than over bare sand and increased with increasing distance from the leading edge of the canopy; however, they were still small (<1 cm) compared to other studies in the literature. Within and downstream of the canopy, sediment movement was observed at velocities below the threshold of motion. It was likely caused by the increased turbulence at those positions. This has large implications for sediment transport in coastal zones where seagrass beds develop.

Parameterizing Urban Canopy Layer transport in an Lagrangian Particle Dispersion Model

NASA Astrophysics Data System (ADS)

Stöckl, Stefan; Rotach, Mathias W.

2016-04-01

The percentage of people living in urban areas is rising worldwide, crossed 50% in 2007 and is even higher in developed countries. High population density and numerous sources of air pollution in close proximity can lead to health issues. Therefore it is important to understand the nature of urban pollutant dispersion. In the last decades this field has experienced considerable progress, however the influence of large roughness elements is complex and has as of yet not been completely described. Hence, this work studied urban particle dispersion close to source and ground. It used an existing, steady state, three-dimensional Lagrangian particle dispersion model, which includes Roughness Sublayer parameterizations of turbulence and flow. The model is valid for convective and neutral to stable conditions and uses the kernel method for concentration calculation. As most Lagrangian models, its lower boundary is the zero-plane displacement, which means that roughly the lower two-thirds of the mean building height are not included in the model. This missing layer roughly coincides with the Urban Canopy Layer. An earlier work "traps" particles hitting the lower model boundary for a recirculation period, which is calculated under the assumption of a vortex in skimming flow, before "releasing" them again. The authors hypothesize that improving the lower boundary condition by including Urban Canopy Layer transport could improve model predictions. This was tested herein by not only trapping the particles, but also advecting them with a mean, parameterized flow in the Urban Canopy Layer. Now the model calculates the trapping period based on either recirculation due to vortex motion in skimming flow regimes or vertical velocity if no vortex forms, depending on incidence angle of the wind on a randomly chosen street canyon. The influence of this modification, as well as the model's sensitivity to parameterization constants, was investigated. To reach this goal, the model was initialized and compared with meteorological and SF6 tracer measurements from the Basel UrBan Boundary Layer Experiment (BUBBLE). The proposed modification does not improve the model's agreement with concentration observations, even though the trapping time shows promising agreement with measurements. Additionally, the modification's influence is smaller than those of different turbulence profiles, zero-plane displacement height and Roughness Sublayer height.

A soil-canopy scheme for use in a numerical model of the atmosphere: 1D stand-alone model

NASA Astrophysics Data System (ADS)

Kowalczyk, E. A.; Garratt, J. R.; Krummel, P. B.

We provide a detailed description of a soil-canopy scheme for use in the CSIRO general circulation models (GCMs) (CSIRO-4 and CSIRO-9), in the form of a one-dimensional stand-alone model. In addition, the paper documents the model's ability to simulate realistic surface fluxes by comparison with mesoscale model simulations (involving more sophisticated soil and boundary-layer treatments) and observations, and the diurnal range in surface quantities, including extreme maximum surface temperatures. The sensitivity of the model to values of the surface resistance is also quantified. The model represents phase 1 of a longer-term plan to improve the atmospheric boundary layer (ABL) and surface schemes in the CSIRO GCMs.

Polarimetric signatures of a coniferous forest canopy based on vector radiative transfer theory

NASA Technical Reports Server (NTRS)

Karam, M. A.; Fung, A. K.; Amar, F.; Mougin, E.; Lopes, A.; Beaudoin, A.

1992-01-01

Complete polarization signatures of a coniferous forest canopy are studied by the iterative solution of the vector radiative transfer equations up to the second order. The forest canopy constituents (leaves, branches, stems, and trunk) are embedded in a multi-layered medium over a rough interface. The branches, stems and trunk scatterers are modeled as finite randomly oriented cylinders. The leaves are modeled as randomly oriented needles. For a plane wave exciting the canopy, the average Mueller matrix is formulated in terms of the iterative solution of the radiative transfer solution and used to determine the linearly polarized backscattering coefficients, the co-polarized and cross-polarized power returns, and the phase difference statistics. Numerical results are presented to investigate the effect of transmitting and receiving antenna configurations on the polarimetric signature of a pine forest. Comparison is made with measurements.

Forward-Looking Infrared Cameras for Micrometeorological Applications within Vineyards

PubMed Central

Katurji, Marwan; Zawar-Reza, Peyman

2016-01-01

We apply the principles of atmospheric surface layer dynamics within a vineyard canopy to demonstrate the use of forward-looking infrared cameras measuring surface brightness temperature (spectrum bandwidth of 7.5 to 14 μm) at a relatively high temporal rate of 10 s. The temporal surface brightness signal over a few hours of the stable nighttime boundary layer, intermittently interrupted by periods of turbulent heat flux surges, was shown to be related to the observed meteorological measurements by an in situ eddy-covariance system, and reflected the above-canopy wind variability. The infrared raster images were collected and the resultant self-organized spatial cluster provided the meteorological context when compared to in situ data. The spatial brightness temperature pattern was explained in terms of the presence or absence of nighttime cloud cover and down-welling of long-wave radiation and the canopy turbulent heat flux. Time sequential thermography as demonstrated in this research provides positive evidence behind the application of thermal infrared cameras in the domain of micrometeorology, and to enhance our spatial understanding of turbulent eddy interactions with the surface. PMID:27649208

Studying urban land-atmospheric interactions by coupling an urban canopy model with a single column atmospheric models

NASA Astrophysics Data System (ADS)

Song, J.; Wang, Z.

2013-12-01

Studying urban land-atmospheric interactions by coupling an urban canopy model with a single column atmospheric models Jiyun Song and Zhi-Hua Wang School of Sustainable Engineering and the Built Environment, Arizona State University, PO Box 875306, Tempe, AZ 85287-5306 Landuse landcover changes in urban area will modify surface energy budgets, turbulent fluxes as well as dynamic and thermodynamic structures of the overlying atmospheric boundary layer (ABL). In order to study urban land-atmospheric interactions, we coupled a single column atmospheric model (SCM) to a cutting-edge single layer urban canopy model (SLUCM). Modification of surface parameters such as the fraction of vegetation and engineered pavements, thermal properties of building and pavement materials, and geometrical features of street canyon, etc. in SLUCM dictates the evolution of surface balance of energy, water and momentum. The land surface states then provide lower boundary conditions to the overlying atmosphere, which in turn modulates the modification of ABL structure as well as vertical profiles of temperature, humidity, wind speed and tracer gases. The coupled SLUCM-SCM model is tested against field measurements of surface layer fluxes as well as profiles of temperature and humidity in the mixed layer under convective conditions. After model test, SLUCM-SCM is used to simulate the effect of changing urban land surface conditions on the evolution of ABL structure and dynamics. Simulation results show that despite the prescribed atmospheric forcing, land surface states impose significant impact on the physics of the overlying vertical atmospheric layer. Overall, this numerical framework provides a useful standalone modeling tool to assess the impacts of urban land surface conditions on the local hydrometeorology through land-atmospheric interactions. It also has potentially far-reaching implications to urban ecohydrological services for cities under future expansion and climate challenges.

Stable Stratification Effects on Flow and Pollutant Dispersion in Boundary Layers Entering a Generic Urban Environment

NASA Astrophysics Data System (ADS)

Tomas, J. M.; Pourquie, M. J. B. M.; Jonker, H. J. J.

2016-05-01

Large-eddy simulations (LES) are used to investigate the effect of stable stratification on rural-to-urban roughness transitions. Smooth-wall turbulent boundary layers are subjected to a generic urban roughness consisting of cubes in an in-line arrangement. Two line sources of pollutant are added to investigate the effect on pollutant dispersion. Firstly, the LES method is validated with data from wind-tunnel experiments on fully-developed flow over cubical roughness. Good agreement is found for the vertical profiles of the mean streamwise velocity component and mean Reynolds stress. Subsequently, roughness transition simulations are done for both neutral and stable conditions. Results are compared with fully-developed simulations with conventional double-periodic boundary conditions. In stable conditions, at the end of the domain the streamwise velocity component has not yet reached the fully-developed state even though the surface forces are nearly constant. Moreover, the internal boundary layer is shallower than in the neutral case. Furthermore, an investigation of the turbulence kinetic energy budget shows that the buoyancy destruction term is reduced in the internal boundary layer, above which it is equal to the undisturbed (smooth wall) value. In addition, in stable conditions pollutants emitted above the urban canopy enter the canopy farther downstream due to decreased vertical mixing. Pollutants emitted below the top of the urban canopy are 85 % higher in concentration in stable conditions mostly due to decreased advection. If this is taken into account concentrations remain 17 % greater in stable conditions due to less rapid internal boundary-layer growth. Finally, it is concluded that in the first seven streets the vertical advective pollutant flux is significant, in contrast to the fully-developed case.

Nematode management in pecans

USDA-ARS?s Scientific Manuscript database

In 2002, the pecan root-knot nematode (Meloidogyne partityla = PRKN) was found on pecan in the southeastern U.S. and was associated with stressed trees exhibiting dead branches in the upper canopy and (or) typical mouse ear (ME) associated foliar symptoms. This research evaluates the host susceptib...

Phylogenetic Structure of Tree Species across Different Life Stages from Seedlings to Canopy Trees in a Subtropical Evergreen Broad-Leaved Forest.

PubMed

Jin, Yi; Qian, Hong; Yu, Mingjian

2015-01-01

Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is necessary for understanding forest community assembly. Here, we examine the phylogenetic structure of tree species across life stages from seedlings to canopy trees, as well as forest gap influence on the phylogenetic structure of forest regeneration in a forest of the subtropical region in China. We investigate changes in phylogenetic relatedness (measured as NRI) of tree species from seedlings, saplings, treelets to canopy trees; we compare the phylogenetic turnover (measured as βNRI) between canopy trees and seedlings in forest understory with that between canopy trees and seedlings in forest gaps. We found that phylogenetic relatedness generally increases from seedlings through saplings and treelets up to canopy trees, and that phylogenetic relatedness does not differ between seedlings in forest understory and those in forest gaps, but phylogenetic turnover between canopy trees and seedlings in forest understory is lower than that between canopy trees and seedlings in forest gaps. We conclude that tree species tend to be more closely related from seedling to canopy layers, and that forest gaps alter the seedling phylogenetic turnover of the studied forest. It is likely that the increasing trend of phylogenetic clustering as tree stem size increases observed in this subtropical forest is primarily driven by abiotic filtering processes, which select a set of closely related evergreen broad-leaved tree species whose regeneration has adapted to the closed canopy environments of the subtropical forest developed under the regional monsoon climate.

Smartphone based hemispherical photography for canopy structure measurement

NASA Astrophysics Data System (ADS)

Wan, Xuefen; Cui, Jian; Jiang, Xueqin; Zhang, Jingwen; Yang, Yi; Zheng, Tao

2018-01-01

The canopy is the most direct and active interface layer of the interaction between plant and environment, and has important influence on energy exchange, biodiversity, ecosystem matter and climate change. The measurement about canopy structure of plant is an important foundation to analyze the pattern, process and operation mechanism of forest ecosystem. Through the study of canopy structure of plant, solar radiation, ambient wind speed, air temperature and humidity, soil evaporation, soil temperature and other forest environmental climate characteristics can be evaluated. Because of its accuracy and effectiveness, canopy structure measurement based on hemispherical photography has been widely studied. However, the traditional method of canopy structure hemispherical photogrammetry based on SLR camera and fisheye lens. This method is expensive and difficult to be used in some low-cost occasions. In recent years, smartphone technology has been developing rapidly. The smartphone not only has excellent image acquisition ability, but also has the considerable computational processing ability. In addition, the gyroscope and positioning function on the smartphone will also help to measure the structure of the canopy. In this paper, we present a smartphone based hemispherical photography system. The system consists of smart phones, low-cost fisheye lenses and PMMA adapters. We designed an Android based App to obtain the canopy hemisphere images through low-cost fisheye lenses and provide horizontal collimation information. In addition, the App will add the acquisition location tag obtained by GPS and auxiliary positioning method in hemisphere image information after the canopy structure hemisphere image acquisition. The system was tested in the urban forest after it was completed. The test results show that the smartphone based hemispherical photography system can effectively collect the high-resolution canopy structure image of the plant.

Phylogenetic Structure of Tree Species across Different Life Stages from Seedlings to Canopy Trees in a Subtropical Evergreen Broad-Leaved Forest

PubMed Central

Jin, Yi; Qian, Hong; Yu, Mingjian

2015-01-01

Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is necessary for understanding forest community assembly. Here, we examine the phylogenetic structure of tree species across life stages from seedlings to canopy trees, as well as forest gap influence on the phylogenetic structure of forest regeneration in a forest of the subtropical region in China. We investigate changes in phylogenetic relatedness (measured as NRI) of tree species from seedlings, saplings, treelets to canopy trees; we compare the phylogenetic turnover (measured as βNRI) between canopy trees and seedlings in forest understory with that between canopy trees and seedlings in forest gaps. We found that phylogenetic relatedness generally increases from seedlings through saplings and treelets up to canopy trees, and that phylogenetic relatedness does not differ between seedlings in forest understory and those in forest gaps, but phylogenetic turnover between canopy trees and seedlings in forest understory is lower than that between canopy trees and seedlings in forest gaps. We conclude that tree species tend to be more closely related from seedling to canopy layers, and that forest gaps alter the seedling phylogenetic turnover of the studied forest. It is likely that the increasing trend of phylogenetic clustering as tree stem size increases observed in this subtropical forest is primarily driven by abiotic filtering processes, which select a set of closely related evergreen broad-leaved tree species whose regeneration has adapted to the closed canopy environments of the subtropical forest developed under the regional monsoon climate. PMID:26098916

Turbulent mixing and fluid transport within Florida Bay seagrass meadows

NASA Astrophysics Data System (ADS)

Hansen, Jennifer C. R.; Reidenbach, Matthew A.

2017-10-01

Seagrasses serve an important function in the ecology of Florida Bay, providing critical nursery habitat and a food source for a variety of organisms. They also create significant benthic structure that induces drag, altering local hydrodynamics that can influence mixing and nutrient dynamics. Thalassia testudinum seagrass meadows were investigated to determine how shoot density and morphometrics alter local wave conditions, the generation of turbulence, and fluid exchange above and within the canopy. Sparsely vegetated and densely vegetated meadows were monitored, with shoot densities of 259 ± 26 and 484 ± 78 shoots m-2, respectively. The temporal and spatial structure of velocity and turbulence were measured using acoustic Doppler velocimeters and an in situ particle image velocimetry (PIV) system positioned both above and within the seagrass canopy. The retention of fluid within the canopy was determined by examining e-folding times calculated from the concentration curves of dye plumes released within the seagrass canopy. Results show that a shear layer with an inflection point develops at the top of the seagrass canopy, which generates instabilities that impart turbulence into the seagrass meadow. Compared to the overlying water column, turbulence was enhanced within the sparse canopy due to flow interaction with the seagrass blades, but reduced within the dense canopy. Wave generated oscillatory motion penetrated deeper into the canopy than unidirectional currents, enhancing fluid exchange. Both shoot density and the relative magnitude of wave- versus current-driven flow conditions were found to be important controls on turbulent exchange of water masses across the canopy-water interface.

Methodology Investigation Characterization of Test Environment.

DTIC Science & Technology

1979-08-01

canopy trees may be briefly deciduous, especially when flowering . Number of tree species is very large. Canopy: Trees 145 to 180 feet (45 to 55 m) tall...rooted palms are abundant. Shrub layer: Dwarf palms 5 to 8 feet (1.5 to 2.5 m) tall with undi- vided leaves usually abundant. Giant herbs with banana ...forest cover for agricultural purposes, corn and banana culture. These sites are now either abandoned or poorly maintained; in either case, tree

Modeling canopy-level productivity: is the "big-leaf" simplification acceptable?

NASA Astrophysics Data System (ADS)

Sprintsin, M.; Chen, J. M.

2009-05-01

The "big-leaf" approach to calculating the carbon balance of plant canopies assumes that canopy carbon fluxes have the same relative responses to the environment as any single unshaded leaf in the upper canopy. Widely used light use efficiency models are essentially simplified versions of the big-leaf model. Despite its wide acceptance, subsequent developments in the modeling of leaf photosynthesis and measurements of canopy physiology have brought into question the assumptions behind this approach showing that big leaf approximation is inadequate for simulating canopy photosynthesis because of the additional leaf internal control on carbon assimilation and because of the non-linear response of photosynthesis on leaf nitrogen and absorbed light, and changes in leaf microenvironment with canopy depth. To avoid this problem a sunlit/shaded leaf separation approach, within which the vegetation is treated as two big leaves under different illumination conditions, is gradually replacing the "big-leaf" strategy, for applications at local and regional scales. Such separation is now widely accepted as a more accurate and physiologically based approach for modeling canopy photosynthesis. Here we compare both strategies for Gross Primary Production (GPP) modeling using the Boreal Ecosystem Productivity Simulator (BEPS) at local (tower footprint) scale for different land cover types spread over North America: two broadleaf forests (Harvard, Massachusetts and Missouri Ozark, Missouri); two coniferous forests (Howland, Maine and Old Black Spruce, Saskatchewan); Lost Creek shrubland site (Wisconsin) and Mer Bleue petland (Ontario). BEPS calculates carbon fixation by scaling Farquhar's leaf biochemical model up to canopy level with stomatal conductance estimated by a modified version of the Ball-Woodrow-Berry model. The "big-leaf" approach was parameterized using derived leaf level parameters scaled up to canopy level by means of Leaf Area Index. The influence of sunlit/shaded leaf separation on GPP prediction was evaluated accounting for the degree of the deviation of 3-dimensional leaf spatial distribution from the random case. More specifically, we compared and evaluated the behavior of both models showing the advantages of sunlit/shaded leaf separation strategy over a simplified big-leaf approach. Keywords: canopy photosynthesis, leaf area index, clumping index, remote sensing.

Examining the canopy interception at a forest field site using cosmic-ray neutron detection

NASA Astrophysics Data System (ADS)

Andreasen, M.; Looms, M.; Christiansen, J. R.; Sonnenborg, T. O.; Stisen, S.; Jensen, K. H.

2017-12-01

Canopy interception, the amount of precipitation captured by the surface of plants and trees, is a key component of the water cycle as it constrains the water flux to the ground below vegetation. Forests have especially high interception capacities and therefore the interception loss often forms a considerable part of the total evapotranspiration. The canopy interception capacity is dependent on the size and structure of the vegetation, and the interception loss can vary substantial in time and space. Measuring the canopy interception loss directly is challenging and current methodologies only represent small areas and rely on indirect approaches. Improving methods to estimate canopy interception loss directly will forward the basic understanding of how vegetation structure interacts with the water cycle and hence prediction of evapotranspiration. The intensity of low-energy neutrons produced by cosmic-rays, measured above the ground surface, is sensitive to the hydrogen content in the upper decimeters of the ground and hence the soil moisture content from a radius of hundreds of meters in the horizontal direction. In order to advance the cosmic-ray neutron (CRN) soil moisture method and extend the application of the CRN method more research has recently focused on the signal of other hydrogen pools on the neutron intensity (e.g., vegetation and canopy interception). A recent study, based on neutron transport modeling, found that the ground level thermal neutron intensity (energy < 1 eV), and as a consequence also the thermal-to-epithermal neutron (T/E) ratio (epithermal energy > 1 eV), increased with increasing canopy interception. In this study, we test whether CRN measurements can be used to provide a direct measure of the canopy interception. Four sets of CR2000/B systems were installed below the canopy in an oak forest stand in Denmark. Each system holds a bare (primarily measuring thermal neutrons) and a moderated detector (primarily measuring epithermal neutrons). The measured T/E ratios are compared to independent canopy interception measurements, obtained from throughfall and precipitation measurements. Furthermore, T/E ratios are related to measurements from leaf wetness sensors, CRN soil moisture estimates, and the biomass density in the canopy derived from a mobile terrestrial laser scanner.

Integrated pest management of two-spotted mite Tetranychus urticae on greenhouse roses using petroleum spray oil and the predatory mite Phytoseiulus persimilis.

PubMed

Nicetic; Watson, D M; Beattie, G A; Meats, A; Zheng, J

2001-01-01

From 1995 to 1999, four experiments were conducted on greenhouse roses to assess the effectiveness of the nC24 petroleum spray oil (PSO), D-C-Tron Plus, against two-spotted mite, Tetranychus urticae Koch (Acarina: Tetranychidae), and to determine how the oil could be most efficiently and effectively used in combination with the predatory mite Phytoseiulus persimilis Athias-Henriot (Acarina: Phytoseiidae) in an integrated pest management program. The results showed that 0.5% PSO applied fortnightly to roses gave excellent protection from T urticae infestation when the mite population was not already established. However, PSO applied after roses were infested with T. urticae above the economic threshold only stabilised populations without reducing them below that threshold. Populations of P. persimilis in the upper and lower canopies were unchanged after two sprays of PSO at 7-day intervals, and application of PSO to the upper canopy was as effective in controlling T. urticae in the presence of P persimilis as spraying the entire plant. Combining PSO with P. persimilis gave better control of T. urticae than using P. persimilis alone. The most cost-effective use of PSO in the presence of P. persimilis is, therefore, to apply spray only to the upper canopy. This will not affect control of powdery mildew with PSO. Comparison of a control program for T urticae based on the monitored use of synthetic miticides with that based on calendar application of PSO revealed that both gave equally effective control. The benefits of combining PSO and P. persimilis in an integrated pest management program for T. urticae on roses over a program based on synthetic fungicides are discussed.

A radiosity model for heterogeneous canopies in remote sensing

NASA Astrophysics Data System (ADS)

GarcíA-Haro, F. J.; Gilabert, M. A.; Meliá, J.

1999-05-01

A radiosity model has been developed to compute bidirectional reflectance from a heterogeneous canopy approximated by an arbitrary configuration of plants or clumps of vegetation, placed on the ground surface in a prescribed manner. Plants are treated as porous cylinders formed by aggregations of layers of leaves. This model explicitly computes solar radiation leaving each individual surface, taking into account multiple scattering processes between leaves and soil, and occlusion of neighboring plants. Canopy structural parameters adopted in this study have served to simplify the computation of the geometric factors of the radiosity equation, and thus this model has enabled us to simulate multispectral images of vegetation scenes. Simulated images have shown to be valuable approximations of satellite data, and then a sensitivity analysis to the dominant parameters of discontinuous canopies (plant density, leaf area index (LAI), leaf angle distribution (LAD), plant dimensions, soil optical properties, etc.) and scene (sun/ view angles and atmospheric conditions) has been undertaken. The radiosity model has let us gain a deep insight into the radiative regime inside the canopy, showing it to be governed by occlusion of incoming irradiance, multiple scattering of radiation between canopy elements and interception of upward radiance by leaves. Results have indicated that unlike leaf distribution, other structural parameters such as LAI, LAD, and plant dimensions have a strong influence on canopy reflectance. In addition, concepts have been developed that are useful to understand the reflectance behavior of the canopy, such as an effective LAI related to leaf inclination.

Taxonomy, Traits, and Environment Determine Isoprenoid Emission from an Evergreen Tropical forest.

NASA Astrophysics Data System (ADS)

Taylor, T.; Alves, E. G.; Tota, J.; Oliveira Junior, R. C.; Camargo, P. B. D.; Saleska, S. R.

2016-12-01

Volatile isoprenoid emissions from the leaves of tropical forest trees significantly affects atmospheric chemistry, aerosols, and cloud dynamics, as well as the physiology of the emitting leaves. Emission is associated with plant tolerance to heat and drought stress. Despite a potentially central role of isoprenoid emissions in tropical forest-climate interactions, we have a poor understanding of the relationship between emissions and ecological axes of forest function. We used a custom instrument to quantify leaf isoprenoid emission rates from over 200 leaves and 80 trees at a site in the eastern Brazilian Amazon. We related standardized leaf emission capacity (EC: leaf emission rate at 1000 PAR) to tree taxonomy, height, light environment, wood traits, and leaf traits. Taxonomy was the strongest predictor of EC, and non-emitters could be found throughout the canopy. But we found that environment and leaf carbon economics constrained the upper bound of EC. For example, the relationship between EC and specific leaf area (SLA; fresh leaf area / dry mass) is described by an envelope with a decreasing upper bound on EC as SLA increases (quantile regression: 85th quantile, p<0.01). That result suggests a limitation on emissions related to leaf carbon investment strategies. EC was highest in the mid-canopy, and in leaves growing under less direct light. While inferences of ecosystem emissions focus on environmental conditions in the canopy, our results suggest that sub-canopy leaves are more responsive. This work is allowing us to develop an ecological understanding of isoprenoid emissions from forests, the basis for a predictive model of emissions that depends on both environmental factors and biological emission capacity that is grounded in plant traits and phylogeny.

Projecting avian response to linked changes in groundwater and riparian floodplain vegetation along a dryland river: A scenario analysis

USGS Publications Warehouse

Arriana, Brand L.; Stromberg, J.C.; Goodrich, D.C.; Dixon, M.D.; Lansey, K.; Kang, D.; Brookshire, D.S.; Cerasale, D.J.

2011-01-01

Groundwater is a key driver of riparian condition on dryland rivers but is in high demand for municipal, industrial, and agricultural uses. Approaches are needed to guide decisions that balance human water needs while conserving riparian ecosystems. We developed a space-for-time substitution model that links groundwater change scenarios implemented within a Decision Support System (DSS) with proportions of floodplain vegetation types and abundances of breeding and migratory birds along the upper San Pedro River, AZ, USA. We investigated nine scenarios ranging from groundwater depletion to recharge. In groundwater decline scenarios, relative proportions of tall-canopied obligate phreatophytes (Populus/Salix, cottonwood/willow) on the floodplain progressively decline, and shrubbier species less dependent on permanent water sources (e.g. Tamarix spp., saltcedar) increase. These scenarios result in broad shifts in the composition of the breeding bird community, with canopy-nesting and water-obligate birds declining but midstory nesting birds increasing in abundance as groundwater declines. For the most extreme draw-down scenario where all reaches undergo groundwater declines, models project that only 10% of the upper San Pedro floodplain would be comprised of cottonwood/willow (73% saltcedar and 18% mesquite), and abundances of canopy-nesting, water-obligate, and spring migrant birds would decline 48%, 72%, and 40%, respectively. Groundwater recharge scenarios were associated with increases in canopy-nesting birds particularly given the extreme recharge scenario (all reaches regain shallow water tables and perennial streamflow). Model outputs serve to assess the sensitivity of biotic groups to potential changes in groundwater and thus to rank scenarios based on their expected ecological impacts. ?? 2010 John Wiley & Sons, Ltd.

Influence of Dynamics and Chemistry on the Diurnal Variation of VOCs in the Planetary Boundary Layer above a Mixed Forest Canopy in the Southeastern United States

NASA Astrophysics Data System (ADS)

Guenther, A. B.; Su, L.; Patton, E. G.; Vila-Guerau Arellano, J.; Mak, J. E.

2014-12-01

The planetary boundary layer (PBL) is a region of inherent interest because reactive VOCs emitted from the forest canopy are mixed with the residual and free tropospheric air masses, oxidized, and/or otherwise removed in this region. The characterization of diurnal variation of VOCs in the PBL is limited due to the lack of appropriate sampling platforms that are able to probe all the regions of interest: from the surface to the entrainment zone. Here we present the application of the Whole Air Sample Profiler (WASP) system during the 2013 Southeast Atmosphere Study (SAS) campaign. A total of 41 research flights (RFs) were carried out during the 2013 SAS campaign between June 1 and June 14 over the Alabama Aquatic Biodiversity Center (AABC) site and the SEARCH site. During each RF, ambient air sampling started from 50-100 m above the canopy top and stopped at ~1200 m above the mean sea level (a.m.s.l). The air samples were subsequently analyzed by using a proton-transfer-reaction time-of-flight mass spectrometry (PTR-TOF-MS). Here we analyze the vertical profiles and averaged diurnal variation of the mixing ratios of several reactive VOC species, including isoprene, the sum of monoterpenes, and first generation oxidation products of isoprene: methyl vinyl ketone and methacrolein (MVK+MACR). A MiXed Layer Chemistry (MXLCH) model, guided by the meteorological and chemical observations during the SAS campaign, is used to study the influence of boundary layer dynamics and new isoprene oxidation mechanism on the diurnal variation of major biogenic VOCs emitted from the forest canopy. The new scheme includes OH recycling through two pathways under low-NOx regime: (1) hydroxyl peroxy radicals (HOC5H8OO•; ISOPO2) unimolecular isomerization, and (2) ISOPO2+HO2. The model is able to reproduce the evolution of the boundary layer dynamics (including potential temperature, and boundary layer height) during the selected simulation dates. Based on the model results, budget analyses are performed to study the roles that the boundary layer dynamics and chemistry play in controlling the evolution of VOCs in the PBL. Chemical tendencies of important species, including organic peroxy radicals (RO2), HO2, and OH are calculated to evaluate the capacity of the new isoprene scheme in explaining the photooxidation processes in the PBL.

Evaluation of wind regimes and their impact on vertical mixing and coupling in a moderately dense forest

NASA Astrophysics Data System (ADS)

Wunder, Tobias; Ehrnsperger, Laura; Thomas, Christoph

2017-04-01

In the last decades much attention has been devoted to improving our understanding of organized motions in plant canopies. Particularly the impact of coherent structures on turbulent flows and vertical mixing in near-neutral conditions has been the focus of many experimental and modeling studies. Despite this progress, the weak-wind subcanopy airflow in concert with stable or weak-wind above-canopy conditions remains poorly understood. In these conditions, evidence is mounting that larger-scale motions, so called sub-meso motions which occupy time scales from minutes to hours and spatial scales from tens of meters to kilometers, dominate transport and turbulent mixing particularly in the subcanopy, because of generally weaker background flow as a result of the enhanced friction due to the plant material. We collected observations from a network of fast-response sensor across the vertical and horizontal dimensions during the INTRAMIX experiment at the Fluxnet site Waldstein/ Weidenbrunnen (DE-Bay) in a moderately dense Norway spruce (Picea Abies) forest over a period of ten weeks. Its main goal was to investigate the role of the submeso-structures on the turbulent wind field and the mixing mechanisms including coherent structures. In a first step, coupling regimes differentiating between weak and strong flows and day- and nighttime-conditions are determined. Subsequently, each of the regimes is analyzed for its dominant flow dynamics identified by wavelet analysis. It is hypothesized that strong vertical wind directional shear does not necessarily indicate a decoupling of vertical layers, but on the contrary may create situations of significant coupling of the sub-canopy with the canopy layers above. Moreover, rapid changes of wind direction or even reversals may generate substantial turbulence and induce intermittent coupling on a variety of time scales. The overarching goal is to improve diagnostics for vertical mixing in plant canopies incorporating turbulence and submeso-motions and to develop a classification of flow modes capable of representing the main driving mechanisms of mixing in forest canopies.

Evapotranspiration modelled from stands of three broad-leaved tropical trees in Costa Rica

NASA Astrophysics Data System (ADS)

Bigelow, Seth

2001-10-01

To examine the impact of tree species on the water cycle in a wet tropical region, annual evapotranspiration (ET) was estimated in Costa Rican plantations of three native, broad-leaved tree species that contrasted strongly in leaf size, leaf area and phenology. Evapotranspiration was estimated using the Penman-Monteith equation for transpiration from the dry canopy, the equilibrium equation for evaporation from the understory and a modified Rutter model of interception for evaporation of water from the canopy when wetted by rainfall. Canopy conductance was estimated from stomatal conductance, leaf area and leaf boundary-layer conductance; canopy storage capacity and filling rate were estimated from throughfall measurements. Micrometeorological instruments were mounted on a scaffolding tower.Mean stomatal conductance, which ranged from 0·1 to 0·7 mol m-2 s-1, was similar to boundary-layer conductance, 0·1 to 0·5 mol m-2 s-1, indicating decoupling of stomata from atmospheric conditions. Mean canopy conductance varied from 0·6 to 0·7 mol m-2 s-1 in the 1994 wet season then dropped to 0·3-0·4 mol m-2 s-1 in stands of the two deciduous species, Cordia and Cedrela, as a result of reduced leaf area during the dry season. Despite increased understory evaporation, dry-season ET from these stands was only 78-81% of ET in stands of the evergreen species, Hyeronima. Maximum canopy water depth varied from 0·2 to 2·2 mm, causing modelled interception to vary from 6% to 25% of annual ET. Higher dry-season transpiration rates along with high rates of evaporation of intercepted rainfall in all seasons led to 14% higher annual ET in Hyeronima stands (1509 mm) than in stands of the species with lowest ET,

Estimation of canopy water interception of a near-tropical montane cloud forest in Taiwan

NASA Astrophysics Data System (ADS)

Apurva, B.; Huang, C. Y.; Zhang, J.

2017-12-01

Tropical and subtropical montane cloud forests are some of the rarest and least studied ecosystems. Due to the frequent immersion of fog water with high humidity, these zones are major water sources for lowland environments and habitats for many fauna and flora. Their dependence on cloud water leaves them highly susceptible to the effects of climate change. Studies have been conducted to quantify the characteristics of the low altitude clouds such as spatial dynamics, cloud top and base heights, occurrence frequency or immersion duration. In this study, we carried out a field measurement to estimate canopy water interception (CWI), which is directly utilized by the ecosystems. The study site was a 61 ha near-tropical hinoki cypress montane cloud forest plantation in northern Taiwan at 1705 m asl. Leaves of CHOB were clipped, air-dried and attached to trees at three different canopy depths from the top to the base of canopies along a high tower. The samples were weighed before and after the occurrence of a fog event. In addition, a cylinder shaped fog gauge was installed at the ground level next to the tower to assess amount of fog water penetrating the canopy layer. After afternoon fog events with the duration of 60 minutes, we found that there was an apparent trend of decline of CWI from top (mean ± standard deviation = 0.023 g ± 0.0015 g), middle (0.021 g ± 0.0015 g) to the bottom (0.013 g ± 0.0015 g) of the canopies. Since the study site is a coniferous evergreen forest plantation with a relatively homogenous surface through seasons, with the background knowledge of the average leaf area index of 4.4, we estimated that this 61 ha site harvested 28.2 Mg of CWI for a daily fog event. We also found that no clear evidence of CWI was observed below the canopies by referring to bi-weekly records from the cylinder shaded fog gauge. Therefore, we can assume that the majority fog water was intercepted by the hinoki cypress canopy layer. This study demonstrates that a substantial amount of fog water can be harvested by the montane cloud forest, and this horizontal precipitation is not negligible and should be taken into account for ecological research.

Parametrization of Drag and Turbulence for Urban Neighbourhoods with Trees

NASA Astrophysics Data System (ADS)

Krayenhoff, E. S.; Santiago, J.-L.; Martilli, A.; Christen, A.; Oke, T. R.

2015-08-01

Urban canopy parametrizations designed to be coupled with mesoscale models must predict the integrated effect of urban obstacles on the flow at each height in the canopy. To assess these neighbourhood-scale effects, results of microscale simulations may be horizontally-averaged. Obstacle-resolving computational fluid dynamics (CFD) simulations of neutrally-stratified flow through canopies of blocks (buildings) with varying distributions and densities of porous media (tree foliage) are conducted, and the spatially-averaged impacts on the flow of these building-tree combinations are assessed. The accuracy with which a one-dimensional (column) model with a one-equation (-) turbulence scheme represents spatially-averaged CFD results is evaluated. Individual physical mechanisms by which trees and buildings affect flow in the column model are evaluated in terms of relative importance. For the treed urban configurations considered, effects of buildings and trees may be considered independently. Building drag coefficients and length scale effects need not be altered due to the presence of tree foliage; therefore, parametrization of spatially-averaged flow through urban neighbourhoods with trees is greatly simplified. The new parametrization includes only source and sink terms significant for the prediction of spatially-averaged flow profiles: momentum drag due to buildings and trees (and the associated wake production of turbulent kinetic energy), modification of length scales by buildings, and enhanced dissipation of turbulent kinetic energy due to the small scale of tree foliage elements. Coefficients for the Santiago and Martilli (Boundary-Layer Meteorol 137: 417-439, 2010) parametrization of building drag coefficients and length scales are revised. Inclusion of foliage terms from the new parametrization in addition to the Santiago and Martilli building terms reduces root-mean-square difference (RMSD) of the column model streamwise velocity component and turbulent kinetic energy relative to the CFD model by 89 % in the canopy and 71 % above the canopy on average for the highest leaf area density scenarios tested: . RMSD values with the new parametrization are less than 20 % of mean layer magnitude for the streamwise velocity component within and above the canopy, and for above-canopy turbulent kinetic energy; RMSD values for within-canopy turbulent kinetic energy are negligible for most scenarios. The foliage-related portion of the new parametrization is required for scenarios with tree foliage of equal or greater height than the buildings, and for scenarios with foliage below roof height for building plan area densities less than approximately 0.25.

Apple production and quality when cultivated under anti-hail cover in Southern Brazil

NASA Astrophysics Data System (ADS)

Bosco, Leosane Cristina; Bergamaschi, Homero; Cardoso, Loana Silveira; de Paula, Viviane Aires; Marodin, Gilmar Arduino Bettio; Nachtigall, Gilmar Ribeiro

2015-07-01

Anti-hail nets may change the microclimate of orchards and hence modify the physicochemical and sensory characteristics of fruits. The present study aimed to evaluate the effects of anti-hail nets on the physical, chemical, and sensory attributes of apples grown in southern Brazil. The study was conducted in commercial orchards, with apples grown under a black anti-hail net under an open sky during the 2008/2009, 2009/2010, and 2010/2011 cycles. Measurements of photosynthetically active radiation were collected at both sites. Physical, chemical, and sensory analyses of fruits were performed in the laboratory. The anti-hail net reduced incident photosynthetically active radiation by 32 %. The light spectrum in the canopy changed the corresponding R/FR (red/far-red) ratio in the lower and upper canopy layers from 0.27 to 1.55, respectively. In contrast to the majority of microclimate studies carried out in the temperate zones of the northern hemisphere, this study in the southern hemisphere showed that although it reduced the incident solar radiation, the cover did not change the color or organoleptic characteristics of "Royal Gala" and "Fuji Suprema" apples. The net cover prolonged the subperiod between fruit setting and harvesting, thus slowing fruit ripening. Therefore, the use of anti-hail nets on apple orchards is a suitable alternative for the protection of apple trees against hail because it causes only small changes in the microclimate and in the maturation period, ensuring fruit production without affecting its quality.

Apple production and quality when cultivated under anti-hail cover in Southern Brazil.

PubMed

Bosco, Leosane Cristina; Bergamaschi, Homero; Cardoso, Loana Silveira; de Paula, Viviane Aires; Marodin, Gilmar Arduino Bettio; Nachtigall, Gilmar Ribeiro

2015-07-01

Anti-hail nets may change the microclimate of orchards and hence modify the physicochemical and sensory characteristics of fruits. The present study aimed to evaluate the effects of anti-hail nets on the physical, chemical, and sensory attributes of apples grown in southern Brazil. The study was conducted in commercial orchards, with apples grown under a black anti-hail net under an open sky during the 2008/2009, 2009/2010, and 2010/2011 cycles. Measurements of photosynthetically active radiation were collected at both sites. Physical, chemical, and sensory analyses of fruits were performed in the laboratory. The anti-hail net reduced incident photosynthetically active radiation by 32%. The light spectrum in the canopy changed the corresponding R/FR (red/far-red) ratio in the lower and upper canopy layers from 0.27 to 1.55, respectively. In contrast to the majority of microclimate studies carried out in the temperate zones of the northern hemisphere, this study in the southern hemisphere showed that although it reduced the incident solar radiation, the cover did not change the color or organoleptic characteristics of "Royal Gala" and "Fuji Suprema" apples. The net cover prolonged the subperiod between fruit setting and harvesting, thus slowing fruit ripening. Therefore, the use of anti-hail nets on apple orchards is a suitable alternative for the protection of apple trees against hail because it causes only small changes in the microclimate and in the maturation period, ensuring fruit production without affecting its quality.

Predicting lettuce canopy photosynthesis with statistical and neural network models

NASA Technical Reports Server (NTRS)

Frick, J.; Precetti, C.; Mitchell, C. A.

1998-01-01

An artificial neural network (NN) and a statistical regression model were developed to predict canopy photosynthetic rates (Pn) for 'Waldman's Green' leaf lettuce (Latuca sativa L.). All data used to develop and test the models were collected for crop stands grown hydroponically and under controlled-environment conditions. In the NN and regression models, canopy Pn was predicted as a function of three independent variables: shootzone CO2 concentration (600 to 1500 micromoles mol-1), photosynthetic photon flux (PPF) (600 to 1100 micromoles m-2 s-1), and canopy age (10 to 20 days after planting). The models were used to determine the combinations of CO2 and PPF setpoints required each day to maintain maximum canopy Pn. The statistical model (a third-order polynomial) predicted Pn more accurately than the simple NN (a three-layer, fully connected net). Over an 11-day validation period, average percent difference between predicted and actual Pn was 12.3% and 24.6% for the statistical and NN models, respectively. Both models lost considerable accuracy when used to determine relatively long-range Pn predictions (> or = 6 days into the future).

Monitoring Forest and Rangeland Change in the United States Using Landsat Time Series Data

NASA Astrophysics Data System (ADS)

Vogelmann, J.; Tolk, B.; Xian, G. Z.; Homer, C.

2011-12-01

The LANDFIRE project produces spatial data layers for fire management applications. As part of the project, 2000 vintage Landsat Thematic Mapper and Enhanced Thematic Mapper plus data sets were used to generate detailed vegetation type data sets for the entire United States. We are currently using several approaches to update this information, including incorporation of (1) Landsat-derived historic fire burn information, (2) forest harvest information from Landsat time series data using the Vegetation Change Tracker, and (3) data sets that capture subtle and gradual intra-state disturbances, such as those related to insects and disease as well as succession. The primary focus of this presentation will be on of the detection and characterization of gradual change occurring in forest and rangeland ecosystems, and how to incorporate this information in the LANDFIRE updating process. Landsat data acquired over the previous 25+ years are being used to assess status and trends of forest and rangeland condition. Current study areas are located in the southwestern US, western Nebraska, western Wyoming, western South Dakota, northeastern US and the central Appalachian Mountains. Trends of changing vegetation index values derived from Landsat time series data stacks are the foundation for the gradual change information being developed. Thus far we have found evidence of gradual systematic change in all areas that we have examined. Many of the conifer forests in the southwestern US are showing declining conditions related to insects and drought, and very few of the examined areas are showing evidence of increased canopy cover or greenness. While sagebrush communities are showing decreases in greenness related to fire, mining, and drought, few of these communities are showing evidence of increased greenness or "improving" conditions. However, there is evidence that some forest communities are expanding and that canopy cover density is increasing at some locations. In Nebraska, increases in canopy cover appear to be mostly related to expansion of eastern red cedar. In the White Mountains of New Hampshire, observed increases in forest canopy appear to be related to understory balsam fir expansion, most likely related to release of forest suppression resulting from the thinning of the upper forest canopy. Continued analyses of time series data using multi-spatial scenes and covering multiple years are required in order to develop accurate impressions and representations of the changing ecosystem patterns and trends that are occurring. The approach demonstrates that Landsat time series data can be used operationally for assessing gradual ecosystem change across large areas. This information complements the information derived from other time-series change detection used for LANDFIRE.

Estimation of In-canopy Flux Distributions of Reactive Nitrogen and Sulfur within a Mixed Hardwood Forest in Southern Appalachia

NASA Astrophysics Data System (ADS)

Wu, Z.; Walker, J. T.; Chen, X.; Oishi, A. C.; Duman, T.

2017-12-01

Estimating the source/sink distribution and vertical fluxes of air pollutants within and above forested canopies is critical for understanding biological, physical, and chemical processes influencing the soil-vegetation-atmosphere exchange. The vertical source-sink profiles of reactive nitrogen and sulfur were examined using multiple inverse modeling methods in a mixed hardwood forest in the southern Appalachian Mountains where the ecosystem is highly sensitive to loads of pollutant from atmospheric depositions. Measurements of the vertical concentration profiles of ammonia (NH3), nitric acid (HNO3), sulfur dioxide (SO2), and ammonium (NH4+), nitrate (NO3-), and sulfate (SO42-) in PM2.5 were measured during five study periods between May 2015 and August 2016. The mean concentration of NH3 decreased with height in the upper canopy and increased below the understory toward the forest floor, indicating that the canopy was a sink for NH3 but the forest floor was a source. All other species exhibited patterns of monotonically decreasing concentration from above the canopy to the forest floor. Using the measured concentration profiles, we simulated the within-canopy flow fields and estimated the vertical source-sink flux profiles using three inverse approaches: a Eulerian high-order closure model (EUL), a Lagrangian localized near-field (LNF) model, and a new full Lagrangian stochastic model (LSM). The models were evaluated using the within- and above-canopy eddy covariance flux measurements of heat, CO2 and H2O. Differences between models were analyzed and the flux profiles were used to investigate the origin and fate of reactive nitrogen and sulfur compounds within the canopy. The knowledge gained in this study will benefit the development of soil-vegetation-atmosphere models capable of partitioning canopy-scale deposition of nitrogen and sulfur to specific ecosystem compartments.

A multilayer model for inferring dry deposition using standard meteorological measurements

NASA Astrophysics Data System (ADS)

Meyers, Tilden P.; Finkelstein, Peter; Clarke, John; Ellestad, Thomas G.; Sims, Pamela F.

1998-09-01

In this paper, we describe the latest version of the dry deposition inferential model, which is used to estimate the deposition velocities (Vd) for SO2, O3, HNO3, and particles with diameters less than 2 μm. The dry deposition networks operated by the National Oceanic and Atmospheric Administration (NOAA) and the Environmental Protection Agency (EPA) use this model to estimate dry deposition on a weekly basis. This model uses a multilayer approach, discretizing the vegetated canopy into 20 layers. The use of canopy radiative transfer and simple wind profile models allows for estimates of stomatal (rs) and leaf boundary layer (rb) resistances to be determined at each layer in the plant canopy for both sunlit and shaded leaves. The effect of temperature, water stress, and vapor pressure deficits on the stomatal resistance (rs) have been included. Comparisons of modeled deposition velocities are made with extensive direct measurements performed at three different locations with different crops. The field experiment is discussed in some detail. Overall, modeled O3 deposition velocities are in good agreement with measured values with the average mean bias for all surfaces of the order of 0.01 cm/s or less. For SO2, mean biases range from -0.05 for corn to 0.15 cm/s for soybeans, while for HNO3, they range from 0.09 for corn to 0.47 cm/s for pasture.

Investigating the vertical dimension of Singapore's urban heat island through quadcopter platforms: an pilot study

NASA Astrophysics Data System (ADS)

Chow, Winston; Ho, Dawn

2016-04-01

In numerous cities, measurements of urban warmth in most urban heat island (UHI) studies are generally constrained towards surface or near-surface (<2 m above surface level) levels across horizontal variations in land use and land cover. However, there has been hitherto limited attention towards the measurement of vertical temperature profiles extending from the urban surface, urban canopy layer through to the urban boundary layer. Knowledge of these profiles, through (a.) how they vary over different local urban morphologies, and (b.) develop with respect to synoptic meteorological conditions, are important towards several aspects of UHI research; these include validating modelling urban canopy lapse rate profiles or estimating the growth of urban plumes. In this novel study, we utilised temperature sensor-loggers attached onto remote controlled aerial quadcopter platforms to measure urban temperature profiles up to 100 m above ground level in Singapore, which is a rapidly urbanizing major tropical metropolis. Three different land use/land cover categories were sampled; a high-rise residential estate, a university campus, and an urban park/green-space. Sorties were flown repeatedly at four different times - sunrise, noon, sunset and midnight. Initial results indicate significant variations in intra-site stability and inversion development between the urban canopy and boundary layers. These profiles are also temporally dynamic, depending on the time of day and larger-scale weather conditions.

Effects of 45 Years of Heavy Road Traffic and Infrastructure on Permafrost and Tundra at Prudhoe Bay, Alaska

NASA Astrophysics Data System (ADS)

Walker, D. A.; Buchhorn, M.; Raynolds, M. K.; Kanevskiy, M. Z.; Matyshak, G. V.; Shur, Y.; Peirce, J.

2015-12-01

The upper permafrost of the Prudhoe Bay Oilfield, the largest oil field in both the United States and in North America, contains significant amounts of excess ground ice, mainly in ice wedges. An increase in infrastructure development and road traffic since the initial development of the Prudhoe Bay Oilfield in 1968 has resulted in extensive flooding, accumulation of road dust, and roadside snowbanks, all of which affect the vegetation and alter the thermal properties of the ground surface. As part of the NSF's Arctic Science, Engineering, and Education for Sustainability (ArcSEES) project, we established four transects in 2014 and 2015 to document the effects of infrastructure and heavy road traffic on adjacent tundra. Two transects were established perpendicular to the Prudhoe Bay Spine Road north of Lake Colleen and two perpendicular to the Dalton Highway next to the Deadhorse airstrip. Prior to infrastructure development in 1949, rather homogeneous networks of low-centered polygons with less than 30 cm of trough-rim elevation contrast covered both locations. We present the detailed results of vegetation analysis, ice-core drilling, and extensive topographic surveys along the transects. A time series of aerial photographs from 1949 to 2014 (yearly since 1969) documents the changing landscapes in relationship to the record of air-temperature, active layer depths, and permafrost temperatures at Deadhorse. Flooding, road dust, and snow drifts have all contributed to creating warmer soil temperatures and deeper active layers near the road. These factors have all contributed in different ways to alteration of the plant canopy. The altered plant canopies in turn further altered the surface albedo and the ground temperatures. Historical photos indicate that between 1989 and 2012 a regional thawing of the ice-wedges occurred, increasing the extent of thermokarst. Our analysis demonstrates the cumulative effects of infrastructure-related and climate-related factors to these ice-rich permafrost landscapes.

Coupled carbon-water exchange of the Amazon rain forest, II. Comparison of predicted and observed seasonal exchange of energy, CO2, isoprene and ozone at a remote site in Rondônia

NASA Astrophysics Data System (ADS)

Simon, E.; Meixner, F. X.; Rummel, U.; Ganzeveld, L.; Ammann, C.; Kesselmeier, J.

2005-04-01

A one-dimensional multi-layer scheme describing the coupled exchange of energy and CO2, the emission of isoprene and the dry deposition of ozone is applied to a rain forest canopy in southwest Amazonia. The model was constrained using mean diel cycles of micrometeorological quantities observed during two periods in the wet and dry season 1999. Predicted net fluxes and concentration profiles for both seasonal periods are compared to observations made at two nearby towers.

The predicted day- and nighttime thermal stratification of the canopy layer is consistent with observations in dense canopies. The observed and calculated net fluxes above and H2O and CO2 concentration profiles within the canopy show a good agreement. The predicted net carbon sink decreases from 2.5 t C ha-1yr-1 for wet season conditions to 1 t C ha-1yr-1 for dry season conditions, whereas observed and predicted midday Bowen ratio increases from 0.5 to 0.8. The evaluation results confirmed a seasonal variability of leaf physiological parameters, as already suggested in the companion study. The predicted midday canopy net flux of isoprene increased from 7.1 mg C m-2h-1 during the wet season to 11.4 mg C m-2h-1 during the late dry season. Applying a constant emission capacity in all canopy layers, resulted in a disagreement between observed and simulated profiles of isoprene concentrations, suggesting a smaller emission capacity of shade adapted leaves and deposition to the soil or leaf surfaces. Assuming a strong light acclimation of emission capacity, equivalent to a 66% reduction of the standard emission factor for leaves in the lower canopy, resulted in a better agreement of observed and calculated concentration profiles and a 30% reduction of the canopy net flux. The mean calculated ozone flux for dry season condition at noontime was ≍12 nmol m-2s-1, agreeing well with observed values. The corresponding deposition velocity increased from 0.8 cm s-1 to >1.6 cm s-1 in the wet season, which can not be explained by increased stomatal uptake. Considering reasonable physiological changes in stomatal regulation, the predicted value was not larger than 1.05 cm s-1. Instead, the observed fluxes could be explained with the model by decreasing the cuticular resistance to ozone deposition from 5000 to 1000 s m-1. For doubled atmospheric CO2 concentrations the model predicts a strong increase of surface temperatures (0.1-1°C) and net assimilation (22%), a considerable shift in the energy budget (≍25% decreasing transpiration and increasing sensible heat), a slight increase of isoprene emissions (10%) and a strong decrease of ozone deposition (35%).

Exploring the spatial distribution of light interception and photosynthesis of canopies by means of a functional-structural plant model.

PubMed

Sarlikioti, V; de Visser, P H B; Marcelis, L F M

2011-04-01

At present most process-based models and the majority of three-dimensional models include simplifications of plant architecture that can compromise the accuracy of light interception simulations and, accordingly, canopy photosynthesis. The aim of this paper is to analyse canopy heterogeneity of an explicitly described tomato canopy in relation to temporal dynamics of horizontal and vertical light distribution and photosynthesis under direct- and diffuse-light conditions. Detailed measurements of canopy architecture, light interception and leaf photosynthesis were carried out on a tomato crop. These data were used for the development and calibration of a functional-structural tomato model. The model consisted of an architectural static virtual plant coupled with a nested radiosity model for light calculations and a leaf photosynthesis module. Different scenarios of horizontal and vertical distribution of light interception, incident light and photosynthesis were investigated under diffuse and direct light conditions. Simulated light interception showed a good correspondence to the measured values. Explicitly described leaf angles resulted in higher light interception in the middle of the plant canopy compared with fixed and ellipsoidal leaf-angle distribution models, although the total light interception remained the same. The fraction of light intercepted at a north-south orientation of rows differed from east-west orientation by 10 % on winter and 23 % on summer days. The horizontal distribution of photosynthesis differed significantly between the top, middle and lower canopy layer. Taking into account the vertical variation of leaf photosynthetic parameters in the canopy, led to approx. 8 % increase on simulated canopy photosynthesis. Leaf angles of heterogeneous canopies should be explicitly described as they have a big impact both on light distribution and photosynthesis. Especially, the vertical variation of photosynthesis in canopy is such that the experimental approach of photosynthesis measurements for model parameterization should be revised.

Exploring the spatial distribution of light interception and photosynthesis of canopies by means of a functional–structural plant model

PubMed Central

Sarlikioti, V.; de Visser, P. H. B.; Marcelis, L. F. M.

2011-01-01

Background and Aims At present most process-based models and the majority of three-dimensional models include simplifications of plant architecture that can compromise the accuracy of light interception simulations and, accordingly, canopy photosynthesis. The aim of this paper is to analyse canopy heterogeneity of an explicitly described tomato canopy in relation to temporal dynamics of horizontal and vertical light distribution and photosynthesis under direct- and diffuse-light conditions. Methods Detailed measurements of canopy architecture, light interception and leaf photosynthesis were carried out on a tomato crop. These data were used for the development and calibration of a functional–structural tomato model. The model consisted of an architectural static virtual plant coupled with a nested radiosity model for light calculations and a leaf photosynthesis module. Different scenarios of horizontal and vertical distribution of light interception, incident light and photosynthesis were investigated under diffuse and direct light conditions. Key Results Simulated light interception showed a good correspondence to the measured values. Explicitly described leaf angles resulted in higher light interception in the middle of the plant canopy compared with fixed and ellipsoidal leaf-angle distribution models, although the total light interception remained the same. The fraction of light intercepted at a north–south orientation of rows differed from east–west orientation by 10 % on winter and 23 % on summer days. The horizontal distribution of photosynthesis differed significantly between the top, middle and lower canopy layer. Taking into account the vertical variation of leaf photosynthetic parameters in the canopy, led to approx. 8 % increase on simulated canopy photosynthesis. Conclusions Leaf angles of heterogeneous canopies should be explicitly described as they have a big impact both on light distribution and photosynthesis. Especially, the vertical variation of photosynthesis in canopy is such that the experimental approach of photosynthesis measurements for model parameterization should be revised. PMID:21355008

Azinphos-methyl residues in apples and spatial distribution of fluorescein in vase-shaped apple trees.

PubMed

Bélanger, A; Bostanian, N J; Boivin, G; Boudreau, F

1991-06-01

Vase-shaped standard apple trees cv. McIntosh were sprayed with azinphos-methyl at pink, pink and 1st cover and 1st cover only. Residue analyses by gas chromatography revealed detectable residues on foliage until mid summer. At harvest, negligible residue levels were found on the peel and the whole apple. On four trees, fluorescein was sprayed in the same manner as the insecticide and maximum levels of the dye were detected on the outside lower canopy along the row. Minimal concentration of fluorescein was detected on the inner upper canopy away from the direction of the row.

How deep does disturbance go? The long-term effects of canopy disturbance on tropical forest soil biogeochemistry

NASA Astrophysics Data System (ADS)

Gutiérrez del Arroyo, O.; Silver, W. L.

2015-12-01

We used the Canopy Trimming Experiment (CTE), an ongoing ecosystem manipulation study in the Luquillo Experimental Forest (LEF), Puerto Rico to determine the decadal-scale effects of canopy disturbance and debris deposition on biogeochemistry throughout the soil profile of a wet tropical forest. These manipulations represent the most significant effects of hurricanes, which may increase in frequency or intensity with warming, strengthening their ecosystem-level effects on carbon (C) and nutrient cycling. Four replicated treatments were applied in 2005 using a complete randomized block design: canopy trimming + debris deposition, canopy trimming only, debris deposition only, and untreated control. In 2015, we sampled soils at 10 cm intervals to 1 m depth in each of 12 plots (3 per treatment). We measured gravimetric moisture content, pH, HCl and citrate-ascorbate (CA) extractable iron (Fe) species, organic (Po) and inorganic fractions of NaHCO3 and NaOH phosphorus (P), as well as total C and nitrogen (N). Soil moisture decreased markedly with depth up to ~60-70 cm, and then stabilized at ~33% down to 1 m. Across all treatments, pH increased significantly with depth, ranging from 4.6 in surface soils (0-10 cm) of trimmed plots to 5.2 in deep soils (80-90 cm) of control plots. Canopy trimming decreased pH significantly, possibly due to increased root activity in surface soils as vegetation recovered. Both HCl and CA extractable Fe showed strong depth dependance, decreasing linearly to 50 cm, and stabilizing at very low concentrations (<0.2 mg/g) down to 1 m. Inorganic P concentrations were low and did not vary significantly with depth. The majority of P was associated with organic matter, with significantly higher values in the upper soil profile (<50 cm). Debris deposition significantly increased Po, revealing the role of hurricanes in subsidizing the available soil P pool in these highly productive, low-P wet tropical forests. Debris deposition also increased soil C and N concentrations in surface soils (<20 cm). Our results suggest that the dominant effects of disturbance are limited to the upper soil profile in this wet tropical forest. However, effects were persistent and detectable after ten years of the CTE, suggesting that hurricanes result in long-term changes in tropical forest biogeochemistry.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Song, P.

A model of the solar chromosphere that consists of two fundamentally different regions, a lower region and an upper region, is proposed. The lower region is covered mostly by weak locally closed magnetic field and small network areas of extremely strong, locally open field. The field in the upper region is relatively uniform and locally open, connecting to the corona. The chromosphere is heated by strong collisional damping of Alfvén waves, which are driven by turbulent motions below the photosphere. The heating rate depends on the field strength, wave power from the photosphere, and altitude in the chromosphere. The wavesmore » in the internetwork area are mostly damped in the lower region, supporting radiation in the lower chromosphere. The waves in the network area, carrying more Poynting flux, are only weakly damped in the lower region. They propagate into the upper region. As the thermal pressure decreases with height, the network field expands to form the magnetic canopy where the damping of the waves from the network area supports radiation in the whole upper region. Because of the vertical stratification and horizontally nonuniform distribution of the magnetic field and heating, one circulation cell is formed in each of the upper and lower regions. The two circulation cells distort the magnetic field and reinforce the funnel-canopy-shaped magnetic geometry. The model is based on classical processes and is semi-quantitative. The estimates are constrained according to observational knowledge. No anomalous process is invoked or needed. Overall, the heating mechanism is able to damp 50% of the total wave energy.« less

30. View of main deck at bow (looking aft from ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

30. View of main deck at bow (looking aft from samson post, upper deck removed), showing anchor windlass (left foreground), head (right foregound), and forward deckhouse; weather canopy overhead not an original or permanent feature - Schooner WAWONA, 1018 Valley Street, Seattle, King County, WA

Hurricane disturbance and recovery of energy balance, CO2 fluxes and canopy structure in a mangrove forest of the Florida Everglades

USGS Publications Warehouse

Barr, Jordan G.; Engel, Vic; Smith, Thomas J.; Fuentes, Jose D.

2012-01-01

Eddy covariance (EC) estimates of carbon dioxide (CO2) fluxes and energy balance are examined to investigate the functional responses of a mature mangrove forest to a disturbance generated by Hurricane Wilma on October 24, 2005 in the Florida Everglades. At the EC site, high winds from the hurricane caused nearly 100% defoliation in the upper canopy and widespread tree mortality. Soil temperatures down to -50 cm increased, and air temperature lapse rates within the forest canopy switched from statically stable to statically unstable conditions following the disturbance. Unstable conditions allowed more efficient transport of water vapor and CO2 from the surface up to the upper canopy layer. Significant increases in latent heat fluxes (LE) and nighttime net ecosystem exchange (NEE) were also observed and sensible heat fluxes (H) as a proportion of net radiation decreased significantly in response to the disturbance. Many of these impacts persisted through much of the study period through 2009. However, local albedo and MODIS (Moderate Resolution Imaging Spectro-radiometer) data (the Enhanced Vegetation Index) indicated a substantial proportion of active leaf area recovered before the EC measurements began 1 year after the storm. Observed changes in the vertical distribution and the degree of clumping in newly emerged leaves may have affected the energy balance. Direct comparisons of daytime NEE values from before the storm and after our measurements resumed did not show substantial or consistent differences that could be attributed to the disturbance. Regression analyses on seasonal time scales were required to differentiate the storm's impact on monthly average daytime NEE from the changes caused by interannual variability in other environmental drivers. The effects of the storm were apparent on annual time scales, and CO2 uptake remained approximately 250 g C m-2 yr-1 lower in 2009 compared to the average annual values measured in 2004–2005. Dry season CO2 uptake was relatively more affected by the disturbance than wet season values. Complex leaf regeneration dynamics on damaged trees during ecosystem recovery are hypothesized to lead to the variable dry versus wet season impacts on daytime NEE. In contrast, nighttime CO2 release (i.e., nighttime respiration) was consistently and significantly greater, possibly as a result of the enhanced decomposition of litter and coarse woody debris generated by the storm, and this effect was most apparent in the wet seasons compared to the dry seasons. The largest pre- and post-storm differences in NEE coincided roughly with the delayed peak in cumulative mortality of stems in 2007–2008. Across the hurricane-impacted region, cumulative tree mortality rates were also closely correlated with declines in peat surface elevation. Mangrove forest–atmosphere interactions are interpreted with respect to the damage and recovery of stand dynamics and soil accretion processes following the hurricane.

Water-Channel Estimation of Eulerian and Lagrangian Time Scales of the Turbulence in Idealized Two-Dimensional Urban Canopies

NASA Astrophysics Data System (ADS)

Di Bernardino, Annalisa; Monti, Paolo; Leuzzi, Giovanni; Querzoli, Giorgio

2017-11-01

Lagrangian and Eulerian statistics are obtained from a water-channel experiment of an idealized two-dimensional urban canopy flow in neutral conditions. The objective is to quantify the Eulerian (TE) and Lagrangian (TL) time scales of the turbulence above the canopy layer as well as to investigate their dependence on the aspect ratio of the canopy, AR, as the latter is the ratio of the width ( W) to the height ( H) of the canyon. Experiments are also conducted for the case of flat terrain, which can be thought of as equivalent to a classical one-directional shear flow. The values found for the Eulerian time scales on flat terrain are in agreement with previous numerical results found in the literature. It is found that both the streamwise and vertical components of the Lagrangian time scale, T_u^L and T_w^L , follow Raupach's linear law within the constant-flux layer. The same holds true for T_w^L in both the canopies analyzed (AR= 1 and AR= 2) and also for T_u^L when AR = 1. In contrast, for AR = 2, T_u^L follows Raupach's law only above z=2H. Below that level, T_u^L is nearly constant with height, showing at z=H a value approximately one order of magnitude greater than that found for AR = 1. It is shown that the assumption usually adopted for flat terrain, that β =TL/TE is proportional to the inverse of the turbulence intensity, also holds true even for the canopy flow in the constant-flux layer. In particular, γ /i_u fits well β _u =T_u^L /T_u^E in both the configurations by choosing γ to be 0.35 (here, i_u =σ _u / \\bar{u} , where \\bar{u} and σ _u are the mean and the root-mean-square of the streamwise velocity component, respectively). On the other hand, β _w =T_w^L /T_w^E follows approximately γ /i_w =0.65/( {σ _w /\\bar{u} } ) for z > 2H, irrespective of the AR value. The second main objective is to estimate other parameters of interest in dispersion studies, such as the eddy diffusivity of momentum (KT) and the Kolmogorov constant (C_0). It is found that C_0 depends appreciably on the velocity component both for the flat terrain and canopy flow, even though for the latter case it is insensitive to AR values. In all the three experimental configurations analyzed here, KT shows an overall linear growth with height in agreement with the linear trend predicted by Prandtl's theory.

Soil base saturation combines with Beech Bark Disease to influence composition and structure of Sugar Maple-Beech forests in an acid rain-impacted region

USGS Publications Warehouse

Lawrence, Gregory B.; McDonnell, Todd C.; Sullivan, Timothy J.; Dovciak, Martin; Bailey, Scott W.; Antidormi, Michael; Zarfos, Michael R.

2018-01-01

Sugar maple, an abundant and highly valued tree species in eastern North America, has experienced decline from soil calcium (Ca) depletion by acidic deposition, while beech, which often coexists with sugar maple, has been afflicted with beech bark disease (BBD) over the same period. To investigate how variations in soil base saturation combine with effects of BBD in influencing stand composition and structure, measurements of soils, canopy, subcanopy, and seedlings were taken in 21 watersheds in the Adirondack region of NY (USA), where sugar maple and beech were the predominant canopy species and base saturation of the upper B horizon ranged from 4.4 to 67%. The base saturation value corresponding to the threshold for Al mobilization (16.8%) helped to define the species composition of canopy trees and seedlings. Canopy vigor and diameter at breast height (DBH) were positively correlated (P < 0.05) with base saturation for sugar maple, but unrelated for beech. However, beech occupied lower canopy positions than sugar maple, and as base saturation increased, the average canopy position of beech decreased relative to sugar maple (P < 0.10). In low-base saturation soils, soil-Ca depletion and BBD may have created opportunities for gap-exploiting species such as red maple and black cherry, whereas in high-base saturation soils, sugar maple dominated the canopy. Where soils were beginning to recover from acidic deposition effects, sugar maple DBH and basal area increased progressively from 2000 to 2015, whereas for beech, average DBH did not change and basal area did not increase after 2010.

Long-Life Self-Renewing Solar Reflector Stack

DOEpatents

Butler, Barry Lynn

1997-07-08

A long-life solar reflector includes a solar collector substrate and a base layer bonded to a solar collector substrate. The first layer includes a first reflective layer and a first acrylic or transparent polymer layer covering the first reflective layer to prevent exposure of the first reflective layer. The reflector also includes at least one upper layer removably bonded to the first acrylic or transparent polymer layer of the base layer. The upper layer includes a second reflective layer and a second acrylic or transparent polymer layer covering the second reflective layer to prevent exposure of the second reflective layer. The upper layer may be removed from the base reflective layer to expose the base layer, thereby lengthening the useful life of the solar reflector. A method of manufacturing a solar reflector includes the steps of bonding a base layer to a solar collector substrate, wherein the base reflective layer includes a first reflective layer and a first transparent polymer or acrylic layer covering the first reflective layer; and removably bonding a first upper layer to the first transparent polymer or acrylic layer of the base layer. The first upper layer includes a second reflective layer and a second transparent polymer or acrylic layer covering the second reflective layer to prevent exposure of the second reflective layer.

The Canopy Horizontal Array Turbulence Study (CHATS)

Treesearch

Edward G. Patton; Thomas W. Horst; Donald H. Lenschow; Peter P. Sullivan; Steven Oncley; Sean Burns; Alex Guenther; Andreas Held; Thomas Karl; Shane Mayor; Luciana Rizzo; Scott Spuler; Jielun Sun; Andrew Turnipseed; Eugene Allwine; Steven Edburg; Brian Lamb; Roni Avissar; Heidi E. Holder; Ron Calhoun; Jan Kleissl; William Massman; Kyaw Tha Paw U; Jeffrey C. Weil

2008-01-01

Turbulence in the planetary boundary layer (PBL) well above the surface has been shown to be independent of the details of the surface roughness. In this region well-quantified similarity relationships work well when characterizing turbulent fluxes (e.g., Raupach, 1979). However, in the near-surface layer which is directly influenced by roughness elements, i.e., the...

Altitudinal gradients of bryophyte diversity and community assemblage in southern Appalachian spruce-fir forests

Treesearch

Sarah E. Stehn; Christopher R. Webster; Janice M. Glime; Michael A. Jenkins

2010-01-01

Ground-layer plant communities in spruce-fir forests of the southern Appalachians have likely undergone significant change since the widespread death of canopy Fraser fir (Abies fraseri) caused by the exotic balsam woolly adelgid (Adelges piceae). Bryophytes comprise an important part of the ground-layer flora in the spruce-fir...

Travelling waves above the canopy of aquatic vegetation

NASA Astrophysics Data System (ADS)

Lyubimov, D.; Lyubimova, T.; Baidina, D.

2012-04-01

When fluid moves over a saturated porous medium with high permeability and porosity, the flow partially involves the fluid in porous medium, however, because of the great resistance force there arises sharp drop of tangential velocity. This leads to the development of instability similar to the Kelvin-Helmholtz instability on discontinuity surface of the tangential velocities of homogeneous fluids. Analogy becomes even more complete if we take into account the deformability of porous medium under the influence of pressure changes. Intensive vortices above the canopy of aquatic vegetation can lead to the coherent oscillations of vegetation, such traveling waves are called monami [1]. In the present paper we investigate stability of steady flow over a saturated porous medium. The importance of this problem is related to the applications to the dynamics of pollutants in the bottom layer of vegetation: the accumulation at low flow and salvo emissions with increasing velocity. We consider a two-layer system consisting of a layer of a viscous incompressible fluid and porous layer saturated with the same fluid located underneath. The lower boundary of the system is assumed to be rigid, the upper boundary - free and non-deformable. Weak slope of the river is taken into account. The problem is solved within the framework of single approach in which a two-layer system is described by a single system of equations for saturated porous medium and the presence of two layers is modeled by introducing variable permeability and porosity, depending on vertical coordinate. The flow in a saturated porous medium is described by the Brinkman model. Solution of the problem for steady flow shows that the velocity profile has two inflection points, which leads to the instability. The neutral curves are obtained for different values of the ratio d of porous layer thickness to full thickness. It is found that the dependence of critical Reynolds number on d is non-monotonic and the wave number of most dangerous perturbations increases monotonically with d. The effect of the deformability of porous medium on linear stability conditions is also investigated. Non-linear flow regimes are studied numerically by finite difference method. The calculations are performed for the rectangular domains whose length is taken to be equal to the wavelength of most dangerous perturbations according to linear stability theory. The calculations show that for low values of Reynolds number the stationary uni-directional flow is realized. Starting from a certain Reynolds number, the stationary oscillations are established with amplitude and frequency depending on the parameters. Analysis of the velocity fields corresponding to different phases of the oscillation period, shows that the observed waves travel in the direction of the basic flow. The work was made under financial support of Russian Foundation for Basic Research. 1. Ghisalberti, M., Nepf, H.M., 2002, Mixing layers and coherent structures in vegetated aquatic flows, J. of Geophysical Research. 107, C2.

Modeling and measuring the nocturnal drainage flow in a high-elevation, subalpine forest with complex terrain

USGS Publications Warehouse

Yi, C.; Monson, Russell K.; Zhai, Z.; Anderson, D.E.; Lamb, B.; Allwine, G.; Turnipseed, A.A.; Burns, Sean P.

2005-01-01

The nocturnal drainage flow of air causes significant uncertainty in ecosystem CO2, H2O, and energy budgets determined with the eddy covariance measurement approach. In this study, we examined the magnitude, nature, and dynamics of the nocturnal drainage flow in a subalpine forest ecosystem with complex terrain. We used an experimental approach involving four towers, each with vertical profiling of wind speed to measure the magnitude of drainage flows and dynamics in their occurrence. We developed an analytical drainage flow model, constrained with measurements of canopy structure and SF6 diffusion, to help us interpret the tower profile results. Model predictions were in good agreement with observed profiles of wind speed, leaf area density, and wind drag coefficient. Using theory, we showed that this one-dimensional model is reduced to the widely used exponential wind profile model under conditions where vertical leaf area density and drag coefficient are uniformly distributed. We used the model for stability analysis, which predicted the presence of a very stable layer near the height of maximum leaf area density. This stable layer acts as a flow impediment, minimizing vertical dispersion between the subcanopy air space and the atmosphere above the canopy. The prediction is consistent with the results of SF6 diffusion observations that showed minimal vertical dispersion of nighttime, subcanopy drainage flows. The stable within-canopy air layer coincided with the height of maximum wake-to-shear production ratio. We concluded that nighttime drainage flows are restricted to a relatively shallow layer of air beneath the canopy, with little vertical mixing across a relatively long horizontal fetch. Insight into the horizontal and vertical structure of the drainage flow is crucial for understanding the magnitude and dynamics of the mean advective CO2 flux that becomes significant during stable nighttime conditions and are typically missed during measurement of the turbulent CO2 flux. The model and interpretation provided in this study should lead to research strategies for the measurement of these advective fluxes and their inclusion in the overall mass balance for CO2 at this site with complex terrain. Copyright 2005 by the American Geophysical Union.

Modeling and measuring the nocturnal drainage flow in a high-elevation, subalpine forest with complex terrain

NASA Astrophysics Data System (ADS)

Yi, Chuixiang; Monson, Russell K.; Zhai, Zhiqiang; Anderson, Dean E.; Lamb, Brian; Allwine, Gene; Turnipseed, Andrew A.; Burns, Sean P.

2005-11-01

The nocturnal drainage flow of air causes significant uncertainty in ecosystem CO2, H2O, and energy budgets determined with the eddy covariance measurement approach. In this study, we examined the magnitude, nature, and dynamics of the nocturnal drainage flow in a subalpine forest ecosystem with complex terrain. We used an experimental approach involving four towers, each with vertical profiling of wind speed to measure the magnitude of drainage flows and dynamics in their occurrence. We developed an analytical drainage flow model, constrained with measurements of canopy structure and SF6 diffusion, to help us interpret the tower profile results. Model predictions were in good agreement with observed profiles of wind speed, leaf area density, and wind drag coefficient. Using theory, we showed that this one-dimensional model is reduced to the widely used exponential wind profile model under conditions where vertical leaf area density and drag coefficient are uniformly distributed. We used the model for stability analysis, which predicted the presence of a very stable layer near the height of maximum leaf area density. This stable layer acts as a flow impediment, minimizing vertical dispersion between the subcanopy air space and the atmosphere above the canopy. The prediction is consistent with the results of SF6 diffusion observations that showed minimal vertical dispersion of nighttime, subcanopy drainage flows. The stable within-canopy air layer coincided with the height of maximum wake-to-shear production ratio. We concluded that nighttime drainage flows are restricted to a relatively shallow layer of air beneath the canopy, with little vertical mixing across a relatively long horizontal fetch. Insight into the horizontal and vertical structure of the drainage flow is crucial for understanding the magnitude and dynamics of the mean advective CO2 flux that becomes significant during stable nighttime conditions and are typically missed during measurement of the turbulent CO2 flux. The model and interpretation provided in this study should lead to research strategies for the measurement of these advective fluxes and their inclusion in the overall mass balance for CO2 at this site with complex terrain.

Aspects of Boreal Forest Hydrology: From Stand to Watershed

NASA Technical Reports Server (NTRS)

Nijssen, B.

2000-01-01

This report evaluates land surface hydrologic processes in the boreal forest using observations collected during the Boreal Ecosystem Atmospheric Study (BOREAS), carried out in the boreal forest of central Canada from 1994 to 1996. Three separate studies, each of which constitutes a journal publication, are included. The first study describes the application of a spatially-distributed hydrologic model, originally developed for mid-latitude forested environments, to selected BOREAS flux measurement sites. Compared to point observations at the flux towers, the model represented energy and moisture fluxes reasonably well, but shortcomings were identified in the soil thermal submodel and the partitioning of evapotranspiration into canopy and subcanopy components. As a first step towards improving this partitioning, the second study develops a new parameterization for transmission of shortwave radiation through boreal forest canopies. The new model accounts for the transmission of diffuse and direct shortwave radiation and accounts for multiple scattering in the canopy and multiple reflections between the canopy layers.

Effects of corn stalk orientation and water content on passive microwave sensing of soil moisture

NASA Technical Reports Server (NTRS)

Oneill, P. E.; Blanchard, B. J.; Wang, J. R.; Gould, W. I.; Jackson, T. J.

1984-01-01

A field experiment was conducted utilizing artificial arrangements of plant components during the summer of 1982 to examine the effects of corn canopy structure and plant water content on microwave emission. Truck-mounted microwave radiometers at C (5 GHz) and L (1.4 GHz) band sensed vertically and horizontally polarized radiation concurrent with ground observations of soil moisture and vegetation parameters. Results indicate that the orientation of cut stalks and the distribution of their dielectric properties through the canopy layer can influence the microwave emission measured from a vegetation/soil scene. The magnitude of this effect varies with polarization and frequency and with the amount of water in the plant, disappearing at low levels of vegetation water content. Although many of the canopy structures and orientations studied in this experiment are somewhat artificial, they serve to improve understanding of microwave energy interactions within a vegetation canopy and to aid in the development of appropriate physically based vegetation models.

Atmospheric stability effects on wind fields and scalar mixing within and just above a subalpine forest in sloping terrain

USGS Publications Warehouse

Burns, Sean P.; Sun, Jielun; Lenschow, D.H.; Oncley, S.P.; Stephens, B.B.; Yi, C.; Anderson, D.E.; Hu, Jiawen; Monson, Russell K.

2011-01-01

Air temperature Ta, specific humidity q, CO2 mole fraction ??c, and three-dimensional winds were measured in mountainous terrain from five tall towers within a 1 km region encompassing a wide range of canopy densities. The measurements were sorted by a bulk Richardson number Rib. For stable conditions, we found vertical scalar differences developed over a "transition" region between 0.05 < Rib < 0.5. For strongly stable conditions (Rib > 1), the vertical scalar differences reached a maximum and remained fairly constant with increasing stability. The relationships q and ??c have with Rib are explained by considering their sources and sinks. For winds, the strong momentum absorption in the upper canopy allows the canopy sublayer to be influenced by pressure gradient forces and terrain effects that lead to complex subcanopy flow patterns. At the dense-canopy sites, soil respiration coupled with wind-sheltering resulted in CO2 near the ground being 5-7 ??mol mol-1 larger than aloft, even with strong above-canopy winds (near-neutral conditions). We found Rib-binning to be a useful tool for evaluating vertical scalar mixing; however, additional information (e.g., pressure gradients, detailed vegetation/topography, etc.) is needed to fully explain the subcanopy wind patterns. Implications of our results for CO2 advection over heterogenous, complex terrain are discussed. ?? 2010 Springer Science+Business Media B.V.

Automation of an RCS (Radar Cross Section) measurement system and its application to investigate the electromagnetic scattering from scale model aircraft canopies

NASA Astrophysics Data System (ADS)

Owens, Scott A.

1989-12-01

The purpose of this study was twofold, the first objective was to complete the development of AFIT's Far-Field Radar Range with a fully automated measurement process. The second objective was to use the facility to investigate the scattering of metallic versus transparent aircraft canopies relative to the scattering of the total aircraft. The approach for the investigation was: (1) to measure scale model aircraft to determine the effect of the RCS of the canopy/cockpit area on the RCS of the total aircraft; and (2) to design and measure a test body which would isolate the canopy/cockpit area from the rest of the aircraft. The result of the work on the first task is a software package called AFIT RCS Measurement Software (ARMS). The successful performance of the far-field range was validated by very favorable comparisons with the Wright Research and Development Center's anechoic chamber. The scale model measurements suggest at most a 5 dB difference between the scattering from the two extreme cases. The test body, however, clearly demonstrated differences up to 20 dB at certain frequencies. This study documents the upper and lower bounds of the subject measurements in an indoor measurement range. The Air Force has expressed interest in steering the investigation to examine materials and/or canopy construction.

The Implement of a Multi-layer Frozen Soil Scheme into SSiB3 and its Evaluation over Cold Regions

NASA Astrophysics Data System (ADS)

Li, Q.

2016-12-01

The SSiB3 is a biophysics-based model of land-atmosphere interactions and is designed for global and regional studies. It has three soil layers, three snow layers, as well as one vegetation layer. Soil moisture of the three soil layers, interception water store for the canopy, subsurface soil temperature, ground temperature, canopy temperature and snow water equivalent are all predicted based on the water and energy balance at canopy, soil and snow. SSiB3 substantially enhances the model's capability for cold season studies and produces reasonable results compared with observations. However, frozen soil processes are ignored in the SSiB3 and may have effects on the interannual variability of soil temperature and deep soil memory. A multi-layer comprehensive frozen soil scheme (FSM), which is developed for climate study has been implemented into the SSiB3 to describe soil heat transfer and water flow affected by frozen processed in soil. In the coupled SSiB3-FSM, both liquid water and ice content have been taken into account in the frozen soil hydrologic and thermal property parameterization. The maximum soil layer depth could reach 10 meters thick depending on land conditions. To better evaluate the models' performance, the coupled offline SSiB3-FSM and SSiB3 have been driven from 1948 to 1958 by the Princeton global meteorological data set, respectively. For the 10yrs run, the coupled SSiB3-FSM almost captures the features over different regions, especially cold regions. In order to analysis and compare the differences of SSIB3-FSM and SSIB3 in detail, monthly mean surface temperature for different regions are compared with CAMS data. The statistical results of surface skin temperature show that high latitude regions, Africa, Eastern Australia, and North American monsoon regions have been greatly improved in SSIB3-FSM. For the global statistics, the RMSE of the surface temperature simulated by SSiB3-FSM can be improved about 0.6K compared to SSiB3. In this study, the improvements in the coupled SSiB3-FSM have also been analyzed.

Incorporating Plant Phenology Dynamics in a Biophysical Canopy Model

NASA Technical Reports Server (NTRS)

Barata, Raquel A.; Drewry, Darren

2012-01-01

The Multi-Layer Canopy Model (MLCan) is a vegetation model created to capture plant responses to environmental change. Themodel vertically resolves carbon uptake, water vapor and energy exchange at each canopy level by coupling photosynthesis, stomatal conductance and leaf energy balance. The model is forced by incoming shortwave and longwave radiation, as well as near-surface meteorological conditions. The original formulation of MLCan utilized canopy structural traits derived from observations. This project aims to incorporate a plant phenology scheme within MLCan allowing these structural traits to vary dynamically. In the plant phenology scheme implemented here, plant growth is dependent on environmental conditions such as air temperature and soil moisture. The scheme includes functionality that models plant germination, growth, and senescence. These growth stages dictate the variation in six different vegetative carbon pools: storage, leaves, stem, coarse roots, fine roots, and reproductive. The magnitudes of these carbon pools determine land surface parameters such as leaf area index, canopy height, rooting depth and root water uptake capacity. Coupling this phenology scheme with MLCan allows for a more flexible representation of the structure and function of vegetation as it responds to changing environmental conditions.

Simulating spatial and temporal variation of corn canopy temperature during an irrigation cycle

NASA Technical Reports Server (NTRS)

Choudhury, B. J.; Federer, C. A.

1983-01-01

The canopy air temperature difference (delta T) which provides an index for scheduling irrigation was examined. The Monteith transpiration equation was combined with both uptake from a single layered root zone and change in internal storage of the plant and the continuity equation for water flux in the soil plant atmosphere system was solved. The model indicates that both daily total transpiration and soil induced depression of plant water potential may be inferred from mid-day delta T. It is suggested that for the soil plant weather data used in the simulation, either a mid day spatial variability of about 0.8K in canopy temperatures or a field averaged delta T of 2 to 4K may be a suitable criterion for irrigation scheduling.

Laser-induced breakdown spectroscopy study of silversmith pieces: the case of a Spanish canopy of the nineteenth century

NASA Astrophysics Data System (ADS)

Gómez-Morón, M. A.; Ortiz, P.; Ortiz, R.; Martín, J. M.; Mateo, M. P.; Nicolás, G.

2016-05-01

Canopies of needlework velvet or silversmith pieces placed on twelve or more battens are widely employed in Spanish catholic ceremonies to cover the image of the virgin. In this paper, we focus our interest on those pieces made of silver. These silver crafts suffered a revolution in the nineteenth century with the development of an electrolyte system that can be applied over carved metal pieces, in order to obtain a silver layer by electrodeposition similar in appearance to the original sterling silver and cheaper. The aim of this research was the application of laser-induced breakdown spectroscopy (LIBS) to the study of a canopy of the nineteenth century in order to assess the techniques used for its manufacturing and the identification of replacement and restoration of original pieces. The LIBS depth profiles show the presence of a micron silver layer over an alloy of copper and zinc in most of the surfaces. Corrosion products, alloy missing, and the restoration with copper layers were detected. These results are consistent with those obtained by scanning electron microscopy with energy-dispersive of X-ray with the advantage that LIBS is a methodology that allows analysing metal pieces without sampling or preparation. In summary, LIBS is a technique that allows the study of silversmith pieces with electrochemical preparation according to the Ruolz technique, and it is also possible to detect subsequent restoration or corrosion zones.

Modeling the interaction between plant canopies and the planetary boundary layer using a new 1D multi-layer soil- vegetation-atmosphere transfer (SVAT) scheme combined with a non-local turbulence closure model

NASA Astrophysics Data System (ADS)

Yetzer, Kenneth H.

A new one-dimensional (1D) soil-vegetation-atmospheric transport (SVAT) scheme is coupled to a nonlocal turbulence closure model in order to simulate the interactions between a forested canopy and the planetary boundary layer. The SVAT consists of mechanistic models for both physiological (photosynthesis, stomatal conductance and soil/root and bole respiration) and micrometeorological (radiative transfer and surface energy exchanges) processes. The turbulence closure model is a first-order, nonlocal turbulence closure called transilient turbulence theory (Stull, 1993; Inclan et al., 1995) which includes the effects of form drag, wake turbulence, and interference to vertical mixing by the plant elements. The submodel that accounts for radiative transfer inside the forest has been taken from Norman (1979) and Baldocchi (1989). It includes the effect of varying mean leaf inclination angle with height and it also accounts for leaf clumping The photosynthesis submodel is taken from Nikolov and others (1995). It accounts for both differences between shaded and sunlit leaves and the variation of photosynthetic capacity with height. The model was tested with data obtained from a deciduous forest in Pennsylvania. The results show reasonable agreement with the observations. They also demonstrate the model's ability to simulate phenomena that is characteristic of tall canopies like forests, including counter gradient-fluxes and local wind speed maxima in the trunk space.

A Study of the Physical Processes of an Advection Fog BoundaryLayer

NASA Astrophysics Data System (ADS)

Liu, D.; Yan, W.; Kang, Z.; Dai, Z.; Liu, D.; Liu, M.; Cao, L.; Chen, H.

2016-12-01

Using the fog boundary layer observation collected by a moored balloon between December 1 and 2, 2009, the processes of advection fog formation and dissipation under cold and warm double-advection conditions was studied. the conclusions are as follows: 1. The advection fog process was generated by the interaction between the near-surface northeast cold advection and the upper layer's southeast warm, humid advection. The ground fog formed in an advection cooling process, and the thick fog disappeared in two hours when the wind shifted from the northeast to the northwest. The top of the fog layer remained over 600 m for most of the time. 2. This advection fog featured a double-inversion structure. The interaction between the southeast warm, humid advection of the upper layer and the descending current generated the upper inversion layer. The northeast cold advection near the ground and the warm, humid advection in the high-altitude layer formed the lower layer clouds and lower inversion layer. The upper inversion layer was composed of southeast warm, humid advection and a descending current with increasing temperature. The double inversion provided good thermal conditions for maintaining the thick fog layer. 3. The southeast wind of the upper layer not only created the upper inversion layer but also brought vapour-rich air to the fog region. The steady southeast vapour transportation by the southeast wind was the main condition that maintained the fog thickness, homogeneous density, and long duration. The low-altitude low-level jet beneath the lower inversion layer helped maintain the thickness and uniform density of the fog layer by enhancing the exchange of heat, momentum and vapour within the lower inversion layer. 4. There were three transportation mechanisms associated with this advection fog: 1) The surface layer vapour was delivered to the lower fog layer. 2) The low-altitude southeast low-level jet transported the vapour to the upper layer. 3) The vapour was exchanged between the upper and lower layers via the turbulent exchange and vertical air motion, which mixed the fog density and maintained the thickness of the fog. These mechanisms explain why the fog top was higher than the lower inversion layer and reached the upper inversion layer, as well as why this advection fog was so thick.

Tree Death Leading To Ecosystem Renewal? Forecasting Carbon Storage As Eastern Forests Age

NASA Astrophysics Data System (ADS)

Curtis, P.; Gough, C. M.; Bohrer, G.; Nadelhoffer, K. J.; Ivanov, V. Y.

2013-12-01

The future trajectory of North American carbon (C) stocks remains uncertain as a subset of maturing trees die in mixed deciduous forests of the U.S. Midwest and East transitioning from early to middle and late succession. We are studying disturbance-structure-function relationships of aging forests in northern Michigan using long-term ecological and meteorological C cycling studies, a large-scale disturbance experiment, a 200-year forest chronosequence, and flux comparisons across three tower sites. We find that ecosystem responses to mortality are characterized by several processes that affect structure-function relationships and alter the way ecosystem functioning interacts with meteorological forcing. We subjected 39 ha of forest to moderate experimental disturbance, similar to that of age-related or climatically induced tree mortality. We found that the mortality of a third of all canopy trees minimally altered the balance between forest C uptake and release, as growth-limiting light and nitrogen resources were rapidly reallocated from dead and dying trees to undisturbed trees. Although disturbance-induced mortality increased soil N mineralization rates, nitrification, and denitrification, N exports from soils remained low. Upper canopy gap formation and a rise in structural complexity allowed increased photosynthetic contribution of sub-canopy vegetation to compensate for the death of canopy dominant trees. However, we found large differences between the transpirational response of maples and oaks to VPD and soil moisture, which led to relative declines in maple transpiration post-disturbance. These hydrologic differences may affect a species' ability to compete for resources following such a disturbance. Changes to canopy structure had a relatively small effect on roughness length and the turbulence forcing of fluxes from the canopy. We currently are studying how tree mortality driven changes in canopy structure affects within-canopy resource distribution and subsequent changes in leaf morphological, physiological and biochemical traits, how disturbance severity relates to the magnitude of C storage resilience, the impacts of clouds and aerosols on surface diffuse light and how they interact with canopy structure to modify C uptake, and how these processes change overall C assimilation given different forest age and disturbance histories. Along a conceptual continuum from structural to functional attributes, our results show that leaf area distribution and its heterogeneity, canopy light, water and nutrient use efficiency, canopy roughness length and turbulent mixing of canopy air, and the coupling between soil moisture and canopy density, all change with successional and disturbance processes and affect ecosystem C fluxes. Patchy mortality and related increases in structural complexity could, against expectations, enhance the C storage of some forests. Our finding that increases in canopy structural complexity improve resource-use efficiency provides a mechanism for maintaining high rates of C storage in aging forests.

Effects of air current speed on gas exchange in plant leaves and plant canopies.

PubMed

Kitaya, Y; Tsuruyama, J; Shibuya, T; Yoshida, M; Kiyota, M

2003-01-01

To obtain basic data on adequate air circulation to enhance plant growth in a closed plant culture system in a controlled ecological life support system (CELSS), an investigation was made of the effects of the air current speed ranging from 0.01 to 1.0 m s-1 on photosynthesis and transpiration in sweetpotato leaves and photosynthesis in tomato seedlings canopies. The gas exchange rates in leaves and canopies were determined by using a chamber method with an infrared gas analyzer. The net photosynthetic rate and the transpiration rate increased significantly as the air current speeds increased from 0.01 to 0.2 m s-1. The transpiration rate increased gradually at air current speeds ranging from 0.2 to 1.0 m s-1 while the net photosynthetic rate was almost constant at air current speeds ranging from 0.5 to 1.0 m s-1. The increase in the net photosynthetic and transpiration rates were strongly dependent on decreased boundary-layer resistances against gas diffusion. The net photosynthetic rate of the plant canopy was doubled by an increased air current speed from 0.1 to 1.0 m s-1 above the plant canopy. The results demonstrate the importance of air movement around plants for enhancing the gas exchange in the leaf, especially in plant canopies in the CELSS. c2002 COSPAR. Published by Elsevier Science Ltd. All rights reserved.

Impact of 3D Canopy Structure on Remote Sensing Vegetation Index and Solar Induced Chlorophyll Fluorescence

NASA Astrophysics Data System (ADS)

Zeng, Y.; Berry, J. A.; Jing, L.; Qinhuo, L.

2017-12-01

Terrestrial ecosystem plays a critical role in removing CO2 from atmosphere by photosynthesis. Remote sensing provides a possible way to monitor the Gross Primary Production (GPP) at the global scale. Vegetation Indices (VI), e.g., NDVI and NIRv, and Solar Induced Fluorescence (SIF) have been widely used as a proxy for GPP, while the impact of 3D canopy structure on VI and SIF has not be comprehensively studied yet. In this research, firstly, a unified radiative transfer model for visible/near-infrared reflectance and solar induced chlorophyll fluorescence has been developed based on recollision probability and directional escape probability. Then, the impact of view angles, solar angles, weather conditions, leaf area index, and multi-layer leaf angle distribution (LAD) on VI and SIF has been studied. Results suggest that canopy structure plays a critical role in distorting pixel-scale remote sensing signal from leaf-scale scattering. In thin canopy, LAD affects both of the remote sensing estimated GPP and real GPP, while in dense canopy, SIF variations are mainly due to canopy structure, instead of just due to physiology. At the microscale, leaf angle reflects the plant strategy to light on the photosynthesis efficiency, and at the macroscale, a priori knowledge of leaf angle distribution for specific species can improve the global GPP estimation by remote sensing.

The atmospheric boundary layer — advances in knowledge and application

NASA Astrophysics Data System (ADS)

Garratt, J. R.; Hess, G. D.; Physick, W. L.; Bougeault, P.

1996-02-01

We summarise major activities and advances in boundary-layer knowledge in the 25 years since 1970, with emphasis on the application of this knowledge to surface and boundary-layer parametrisation schemes in numerical models of the atmosphere. Progress in three areas is discussed: (i) the mesoscale modelling of selected phenomena; (ii) numerical weather prediction; and (iii) climate simulations. Future trends are identified, including the incorporation into models of advanced cloud schemes and interactive canopy schemes, and the nesting of high resolution boundary-layer schemes in global climate models.

An Investigation of Flow over High Roughness. Task I: Study of Airflow in Simulated Temperature and Tropical Forest Canopies, Fort Huachuca.

DTIC Science & Technology

ATMOSPHERIC MOTION, TREES), (*AEROSOLS, DIFFUSION ), TROPICAL REGIONS, SIMULATION, ATMOSPHERIC TEMPERATURE, TURBULENT BOUNDARY LAYER, ROUGHNESS, FORESTRY, ATMOSPHERE MODELS, WIND TUNNELS, COLORADO, MILITARY FACILITIES

Leaf photosynthetic traits scale with hydraulic conductivity and wood density in Panamanian forest canopy trees.

Treesearch

L.S. Santiago; G. Goldstein; F.C. Meinzer; J.B. Fisher; K. Maehado; D. Woodruff; T. Jones

2004-01-01

We investigated how water transport capacity, wood density and wood anatomy were related to leaf photosynthetic traits in two lowland forests in Panama. Leaf-specific hydraulic conductivity (kL) of upper branches was positively correlated with maximum rates of net CO2, assimilation per unit leaf area (Aarea...

The forest carnivores: marten and fisher

Treesearch

William J. Zielinski

2014-01-01

Martens and fishers, as predators, perform important functions that help sustain the integrity of ecosystems. Both species occur primarily in mature forest environments that are characterized by dense canopy, large-diameter trees, a diverse understory community, and abundant standing and downed dead trees. Martens occur in the upper montane forests, where the threat of...

Using Distributed Temperature Sensing for measuring vertical temperature profiles and air temperature variance in the roughness sublayer above a forest canopy

NASA Astrophysics Data System (ADS)

Schilperoort, B.; Coenders, M.; Savenije, H. H. G.

2017-12-01

In recent years, the accuracy and resolution of Distributed Temperature Sensing (DTS) machines has increased enough to expand its use in atmospheric sciences. With DTS the temperature of a fiber optic (FO) cable can be measured with a high frequency (1 Hz) and high resolution (0.30 m), for cable lengths up to kilometers. At our measurement site, a patch of 26 to 30 m tall Douglas Fir in mixed forest, we placed FO cables vertically along a 48 m tall flux tower. This gives a high resolution vertical temperature profile above, through, and below the canopy. By using a `bare' FO cable, with a diameter of 0.25 mm, we are able to measure variations in air temperature at a very small timescale, and are able to measure a vertical profile of the air temperature variance. The vertical temperature profiles can be used to study the formation of the stable boundary layer above and in the canopy at a high resolution. It also shows that a stable layer can develop below the canopy, which is not limited to night time conditions but also occurs during daytime. The high frequency measurements can be used to study the gradient of the variance of air temperature over the height. To study how the flux tower itself affects temperature variance measurements, the `bare' FO cable can be placed horizontally under a support structure away from the flux tower. Lastly, by using the hot-wire anemometer principle with DTS, the measurements can be expanded to also include vertical wind profile.

The responses of light interception, photosynthesis and fruit yield of cucumber to LED-lighting within the canopy.

PubMed

Trouwborst, Govert; Oosterkamp, Joke; Hogewoning, Sander W; Harbinson, Jeremy; van Ieperen, Wim

2010-03-01

Mathematical models of light attenuation and canopy photosynthesis suggest that crop photosynthesis increases by more uniform vertical irradiance within crops. This would result when a larger proportion of total irradiance is applied within canopies (interlighting) instead of from above (top lighting). These irradiance profiles can be generated by Light Emitting Diodes (LEDs). We investigated the effects of interlighting with LEDs on light interception, on vertical gradients of leaf photosynthetic characteristics and on crop production and development of a greenhouse-grown Cucumis sativus'Samona' crop and analysed the interaction between them. Plants were grown in a greenhouse under low natural irradiance (winter) with supplemental irradiance of 221 micromol photosynthetic photon flux m(-2) s(-1) (20 h per day). In the interlighting treatment, LEDs (80% Red, 20% Blue) supplied 38% of the supplemental irradiance within the canopy with 62% as top lighting by High-Pressure Sodium (HPS)-lamps. The control was 100% top lighting (HPS lamps). We measured horizontal and vertical light extinction as well as leaf photosynthetic characteristics at different leaf layers, and determined total plant production. Leaf mass per area and dry mass allocation to leaves were significantly greater but leaf appearance rate and plant length were smaller in the interlighting treatment. Although leaf photosynthetic characteristics were significantly increased in the lower leaf layers, interlighting did not increase total biomass or fruit production, partly because of a significantly reduced vertical and horizontal light interception caused by extreme leaf curling, likely because of the LED-light spectrum used, and partly because of the relatively low irradiances from above.

How vertical patterns in leaf traits shift seasonally and the implications for modeling canopy photosynthesis in a temperate deciduous forest.

PubMed

Coble, Adam P; VanderWall, Brittany; Mau, Alida; Cavaleri, Molly A

2016-09-01

Leaf functional traits are used in modeling forest canopy photosynthesis (Ac) due to strong correlations between photosynthetic capacity, leaf mass per area (LMA) and leaf nitrogen per area (Narea). Vertical distributions of these traits may change over time in temperate deciduous forests as a result of acclimation to light, which may result in seasonal changes in Ac To assess both spatial and temporal variations in key traits, we measured vertical profiles of Narea and LMA from leaf expansion through leaf senescence in a sugar maple (Acer saccharum Marshall) forest. To investigate mechanisms behind coordinated changes in leaf morphology and function, we also measured vertical variation in leaf carbon isotope composition (δ(13)C), predawn turgor pressure, leaf water potential and osmotic potential. Finally, we assessed potential biases in Ac estimations by parameterizing models with and without vertical and seasonal Narea variations following leaf expansion. Our data are consistent with the hypothesis that hydrostatic constraints on leaf morphology drive the vertical increase in LMA with height early in the growing season; however, LMA in the upper canopy continued to increase over time during light acclimation, indicating that light is primarily driving gradients in LMA later in the growing season. Models with no seasonal variation in Narea overestimated Ac by up to 11% early in the growing season, while models with no vertical variation in Narea overestimated Ac by up to 60% throughout the season. According to the multilayer model, the upper 25% of leaf area contributed to over 50% of Ac, but when gradients of intercellular CO2, as estimated from δ(13)C, were accounted for, the upper 25% of leaf area contributed to 26% of total Ac Our results suggest that ignoring vertical variation of key traits can lead to considerable overestimation of Ac. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Comparison of modeled backscatter with SAR data at P-band

NASA Technical Reports Server (NTRS)

Wang, Yong; Davis, Frank W.; Melack, John M.

1992-01-01

In recent years several analytical models were developed to predict microwave scattering by trees and forest canopies. These models contribute to the understanding of radar backscatter over forested regions to the extent that they capture the basic interactions between microwave radiation and tree canopies, understories, and ground layers as functions of incidence angle, wavelength, and polarization. The Santa Barbara microwave model backscatter model for woodland (i.e. with discontinuous tree canopies) combines a single-tree backscatter model and a gap probability model. Comparison of model predictions with synthetic aperture radar (SAR) data and L-band (lambda = 0.235 m) is promising, but much work is still needed to test the validity of model predictions at other wavelengths. The validity of the model predictions at P-band (lambda = 0.68 m) for woodland stands at our Mt. Shasta test site was tested.

Aerial dispersal of particles emitted inside plant canopies: Application to the spread of plant diseases

NASA Astrophysics Data System (ADS)

Pan, Ying

This work combines numerical, experimental, and theoretical methods to investigate the dispersion of particles inside and above plant canopies. The large-eddy simulation (LES) approach is used to reproduce turbulence statistics and three-dimensional particle dispersion within the canopy roughness sublayer. The Eulerian description of conservation laws of fluid momentum and particle concentration implies that the continuous concentration field is advected by the continuous flow field. Within the canopy, modifications are required for the filtered momentum and concentration equations, because spatial filtering of flow variables and concentration field is inapplicable to a control volume consisting of both fluid and solid elements. In this work, the canopy region is viewed as a space occupied by air only. The sink of airflow momentum induced by forces acting on the surfaces of canopy elements is parameterized as a non-conservative virtual body force that dissipates the kinetic energy of the air. This virtual body force must reflect the characteristic of the surface forces exerted by canopy elements within the control volume, and is parameterized as a "drag force" following standard practice in LES studies. Specifically, the "drag force" is calculated as a product of a drag coefficient, the projected leaf area density, and the square of velocity. Using a constant drag coefficient, this model allows first-order accuracy in reproducing the vertically integrated sink of momentum within the canopy layer for airflows of high Reynolds number. The corresponding LES results of first- and second-order turbulence statistics are in good agreement with experimental data obtained in the field interior, within and just above mature maize canopies. However, the distribution of momentum sink among weak and strong events has not been well reproduced, inferred from the significant underestition of streamwise and vertical velocity skewness as well as the fractions of vertical momentum flux transported by strong events. Using a velocity-dependent drag coefficient that accounts for the effect of plant reconfiguration, the "drag force" model leads to LES results of streamwise and vertical velocity skewness as well as the fractions of vertical momentum flux transported by strong events in better agreement with field experimental data. The link between plant reconfiguration and turbulence dynamics within the canopy roughness sublayer is further investigated. The "reconfiguration drag model" using velocity-dependent drag coefficient is revised to incorporate a theoretical model of the force balance on individual crosswind blades. In the LES, the dimension and degree of the reconfiguration of canopy elements affect the magnitude and position of peak streamwise velocity skewness within the canopy as well as the fractions of vertical momentum flux transported by strong events. The streamwise velocity skewness is shown to be related to the penetration of strong events into the canopy, which is associated with the passage of canopy-scale coherent eddies. With the profile of mean vertical momentum flux constrained by field experimental data, changing the model of drag coefficient induces negligible changes in the vertically integrated "drag force" within the canopy layer. Consequently, first- and second-order turbulence statistics remain approximately the same. However, enhancing the rate of decrease of drag coefficient with increasing velocity increases the streamwise and vertical velocity skewness, the fractions of vertical momentum flux transported by strong events, as well as the ratio between vertical momentum flux transported by relatively strong head-down "sweeps" and relatively weak head-up "ejections." These results confirmed the inadequacy of describing the effects of canopy-scale coherent structures using just first- and second-order turbulence statistics. The filtered concentration equation is applied to the dispersion of particles within the canopy roughness sublayer, assuming that a virtual continuous concentration field is advected by a virtual continuous velocity field. A canopy deposition model is used to model the sink of particle concentration associated with the impaction, sedimentation, retention, and re-entrainment of particles on the surfaces of canopy elements. LES results of mean particle concentration field and mean ground deposition rate were evaluated against data obtained during an artificial continuous point-source release experiment. Accounting for the effect of reconfiguration by using a velocity dependent drag coefficient leads to better agreement between LES results and field experimental data of the mean particle concentration field, suggesting the importance of reproducing the distribution of momentum sink among weak and strong events for reproducing the dispersion of particles. LES results obtained using a velocity-dependent drag coefficient are analyzed to estimate essential properties for the occurrence of plant disease epidemics. The most interesting finding is that an existing analytical function can be used to model the crosswind-integrated mean concentration field above the canopy normalized by the escape fraction for particles released from the field interior. (Abstract shortened by ProQuest.).

Simulation of ICESat-2 canopy height retrievals for different ecosystems

NASA Astrophysics Data System (ADS)

Neuenschwander, A. L.

2016-12-01

Slated for launch in late 2017 (or early 2018), the ICESat-2 satellite will provide a global distribution of geodetic measurements from a space-based laser altimeter of both the terrain surface and relative canopy heights which will provide a significant benefit to society through a variety of applications ranging from improved global digital terrain models to producing distribution of above ground vegetation structure. The ATLAS instrument designed for ICESat-2, will utilize a different technology than what is found on most laser mapping systems. The photon counting technology of the ATLAS instrument onboard ICESat-2 will record the arrival time associated with a single photon detection. That detection can occur anywhere within the vertical distribution of the reflected signal, that is, anywhere within the vertical distribution of the canopy. This uncertainty of where the photon will be returned from within the vegetation layer is referred to as the vertical sampling error. Preliminary simulation studies to estimate vertical sampling error have been conducted for several ecosystems including woodland savanna, montane conifers, temperate hardwoods, tropical forest, and boreal forest. The results from these simulations indicate that the canopy heights reported on the ATL08 data product will underestimate the top canopy height in the range of 1 - 4 m. Although simulation results indicate the ICESat-2 will underestimate top canopy height, there is, however, a strong correlation between ICESat-2 heights and relative canopy height metrics (e.g. RH75, RH90). In tropical forest, simulation results indicate the ICESat-2 height correlates strongly with RH90. Similarly, in temperate broadleaf forest, the simulated ICESat-2 heights were also strongly correlated with RH90. In boreal forest, the simulated ICESat-2 heights are strongly correlated with RH75 heights. It is hypothesized that the correlations between simulated ICESat-2 heights and canopy height metrics are a function of both canopy cover and vegetation physiology (e.g. leaf size/shape) which contributes to the horizontal and vertical structure of the vegetation.

Ground level air convection produces frost damage patterns in turfgrass

NASA Astrophysics Data System (ADS)

Ackerson, Bruce J.; Beier, Richard A.; Martin, Dennis L.

2015-11-01

Frost injury patterns are commonly observed on the warm-season turfgrass species bermudagrass ( Cynodon species Rich.), zoysiagrass ( Zoysia species Willd.), and buffalograss [ Bouteloua dactyloides (Nutt.) J.T. Columbus] in cool-temperate and subtropical zones. Qualitative observations of these injury patterns are presented and discussed. A model for the formation of such patterns based on thermal instability and convection of air is presented. The characteristic length scale of the observed frost pattern injury requires a temperature profile that decreases with height from the soil to the turfgrass canopy surface followed by an increase in temperature with height above the turfgrass canopy. This is justified by extending the earth temperature theory to include a turf layer with atmosphere above it. Then the theory for a thermally unstable layer beneath a stable region by Ogura and Kondo is adapted to a turf layer to include different parameter values for pure air, as well as for turf, which is treated as a porous medium. The earlier porous medium model of Thompson and Daniels proposed to explain frost injury patterns is modified to give reasonable agreement with observed patterns.

Ground level air convection produces frost damage patterns in turfgrass.

PubMed

Ackerson, Bruce J; Beier, Richard A; Martin, Dennis L

2015-11-01

Frost injury patterns are commonly observed on the warm-season turfgrass species bermudagrass (Cynodon species Rich.), zoysiagrass (Zoysia species Willd.), and buffalograss [Bouteloua dactyloides (Nutt.) J.T. Columbus] in cool-temperate and subtropical zones. Qualitative observations of these injury patterns are presented and discussed. A model for the formation of such patterns based on thermal instability and convection of air is presented. The characteristic length scale of the observed frost pattern injury requires a temperature profile that decreases with height from the soil to the turfgrass canopy surface followed by an increase in temperature with height above the turfgrass canopy. This is justified by extending the earth temperature theory to include a turf layer with atmosphere above it. Then the theory for a thermally unstable layer beneath a stable region by Ogura and Kondo is adapted to a turf layer to include different parameter values for pure air, as well as for turf, which is treated as a porous medium. The earlier porous medium model of Thompson and Daniels proposed to explain frost injury patterns is modified to give reasonable agreement with observed patterns.

Humus layer is the main locus of secondary SO4 production in boreal forests

NASA Astrophysics Data System (ADS)

Houle, Daniel; Marty, Charles; Duchesne, Louis; Gagnon, Christian

2014-02-01

Identifying the sources of S exported from catchments and the reactivity of the large soil organic S pool is crucial to understand the mid- or long-term response of forested catchments to decreasing atmospheric S deposition and global warming. Sulfur fluxes as well as S and O isotopes of SO4 were measured in precipitation, throughfall, soil solutions and streams at two boreal forest catchments respectively dominated by black spruce (BS) and balsam fir (BF) in Quebec, Canada. Overall, δ34S-SO4 signature showed relatively small variations among various solution types. However, at both sites, δ18O-SO4 in precipitation (averages of 10.5-11.1‰) was decreased by 3.5-3.6‰ in throughfall because of the production of secondary SO4 through oxidation of SO2 deposited on the canopy. Throughfall δ18O-SO4 was decreased by a further 5.4-6.6‰ in the solution leaving the humus layer which was attributed to the production of secondary SO4 under the action of soil microorganisms through the oxidation of organic S during which the S atom acquired O from water and gaseous O2 present in the soil. A mixing equation based on known isotopic signature of each source suggested that ˜67-81% of the S-SO4 leaving the catchments had interacted with the canopy and the humus layer. The stability of δ18O-SO4 in the mineral soil solution and in the stream of both sites, suggests that SO4 does not undergo reduction-oxidation cycles after its passage through the humus layer. Despite its huge size, the organic S reservoir within the mineral soil would be largely inert. Given the chemical nature of SO4 transformation in the canopy, the humus layer would be responsible for nearly 100% of the biological production of secondary SO4 in the whole watershed at both sites. Taking into account the substantial production of dissolved organic S in the humus layer further emphasizes the crucial importance of the latter in the S cycling of boreal forests.

A canopy radiative transfer scheme with explicit FAPAR for the ISBA-A-gs land surface model: impact on carbon fluxes

NASA Astrophysics Data System (ADS)

Calvet, Jean-Christophe; Carrer, Dominique; Roujean, Jean-Louis; Lafont, Sébastien

2013-04-01

The ISBA-A-gs land surface model is a component of the SURFEX modeling platform developed by Meteo-France, used for research and operational applications in meteorology, hydrology, and climate modeling. ISBA-A-gs simulates hourly water and CO2 fluxes together with soil moisture. An option of the model permits the simulation of the vegetation biomass and of the leaf area index (LAI). The simulated photosynthesis depends on atmospheric CO2 concentration, air temperature and humidity, soil moisture, radiant solar energy, the photosynthetic capacity of the leaves and on factors that condition the distribution of solar radiation over the leaves. In the original version of the model (Jacobs et al. (Agr. Forest Meteorol., 1996), Calvet et al. (Agr. Forest Meteorol., 1998)), the radiative transfer scheme within the canopy was implemented according to a self shading approach. The incident fluxes at the top of the canopy go through a multi-layer vegetation cover. Then, the attenuated flux in the PAR wavelength domain of each layer is used by the photosynthesis model to calculate the leaf net assimilation of CO2 (An). The leaf-level An values are then integrated at the canopy level. In this study, an upgraded version of the radiative transfer model is implemented. An assessment of the vegetation transmittance functions and of various canopy light-response curves is made. The fluxes produced by the new version of ISBA-A-gs are evaluated using data from a number of FLUXNET forest sites. The new model presents systematically better scores than the previous version. Moreover, ISBA-A-gs is now able to simulate prognostic values of the fraction of absorbed PAR (FAPAR). As FAPAR can be observed from space, this new capability permits the validation of the model simulations at a global scale, and the integration of measured FAPAR values in the model through data assimilation techniques.

Species-specific Mechanisms Contributing to the Mesophication of Upland Oak Stands in the Absence of Fire

NASA Astrophysics Data System (ADS)

Babl, E. K.; Alexander, H. D.; Siegert, C. M.; Willis, J. L.; Berry, A. I.

2017-12-01

Upland oak forests of the eastern United States are shifting dominance towards shade-tolerant, fire-intolerant species. This shift is hypothesized to be driven by anthropogenic fire suppression and lead to mesophication, a positive feedback loop where shade-tolerant, fire-sensitive species (i.e. mesophytes) create a cool, moist understory, reducing forest flammability and promoting their own proliferation at the expense of pyrophytic, shade-intolerant species such as oaks. There have been few empirical studies identifying mechanisms of mesophication, and these studies have yet to extensively explore potential mesophytes other than red maple (Acer rubrum). To address this issue, we sampled four hypothesized mesophytes (A. rubrum, A. saccharum, Carya glabra, and Fagus grandifolia) and two upland oak species (Quercus alba and Q. montana) across a gradient of sizes (20-60 cm DBH) in western Kentucky. We quantified canopy, bark, and leaf litter traits among upland oaks and mesophytes that may lead to differences in forest flammability. Preliminary results show that mesophytes had thinner and smoother bark than upland oaks and an increased canopy volume (normalized to stem volume), traits known to influence water movement through the canopy and understory microclimate. Maple leaf litter also decomposed faster, which could decrease fuel loads; after 6 months, red and sugar maple leaf litter lost 37% of original mass compared to 32%, 22%, and 14% mass loss in hickory, oak, and American beech litter, respectively. Furthermore, volumetric soil moisture of the soil organic layer beneath the canopies of mesophytes was 62% moister two days following a rainfall event compared to oaks. These differences in soil organic layer water retention after rainfall could lead to fuel discontinuity. These findings suggest that mesophytes may alter future forest flammability through their bark, canopy, and leaf litter traits which may modify fuel moisture, loads, and continuity and that a mesophication tipping point may eventually occur that prevents restoration efforts using prescribed fire.

Modeling the Urban Boundary and Canopy Layers

EPA Science Inventory

Today, we are confronted with increasingly more sophisticated application requirements for urban modeling. These include those that address emergency response to acute exposures from toxic releases, health exposure assessments from adverse air quality, energy usage, and character...

Queensland Seasons

Atmospheric Science Data Center

2016-05-27

... are in turn influenced by vegetation structure, terrain and soil type, and by the different solar illumination conditions on the two dates. ... wavelenths is strongly scattered between the leaf layers of the dense canopies, and the influence of shadows between the tree ...

Multispectral determination of vegetative cover in corn crop canopy

NASA Technical Reports Server (NTRS)

Stoner, E. R.; Baumgardner, M. F.

1972-01-01

The relationship between different amounts of vegetative ground cover and the energy reflected by corn canopies was investigated. Low altitude photography and an airborne multispectral scanner were used to measure this reflected energy. Field plots were laid out, representing four growth stages of corn. Two plot locations were chosen-on a very dark and a very light surface soil. Color and color infrared photographs were taken from a vertical distance of 10 m. Estimates of ground cover were made from these photographs and were related to field measurements of leaf area index. Ground cover could be predicted from leaf area index measurements by a second order equation. Microdensitometry and digitzation of the three separated dye layers of color infrared film showed that the near infrared dye layer is most valuable in ground cover determinations. Computer analysis of the digitized photography provided an accurate method of determining precent ground cover.

Time series data of a broadleaved secondary forest in Japan as affected by deer and mass mortality of oak trees.

PubMed

Itô, Hiroki

2017-01-01

Abandonment of broadleaved secondary forests that have been used for various purposes may cause the loss of biodiversity. Some of these forests suffer from diseases such as Japanese oak wilt. An increasing number of deer also impact some of them. Monitoring and recording the status of such forests is important for their proper management. This data set provides a concrete example of temporal changes in a temperate broadleaved secondary forest. The forest has been damaged by mass mortality of oak trees caused by Japanese oak wilt disease. In addition, the forest has been under foraging pressure by sika deer ( Cervus nippon Temminck). The data set can provide information on how such a forest has changed in species composition of the canopy and sub-canopy layers and in species occurrence in the understory layer.

A Novel Surface Structure Consisting of Contact-active Antibacterial Upper-layer and Antifouling Sub-layer Derived from Gemini Quaternary Ammonium Salt Polyurethanes.

PubMed

He, Wei; Zhang, Yi; Li, Jiehua; Gao, Yunlong; Luo, Feng; Tan, Hong; Wang, Kunjie; Fu, Qiang

2016-08-26

Contact-active antibacterial surfaces play a vital role in preventing bacterial contamination of artificial surfaces. In the past, numerous researches have been focused on antibacterial surfaces comprising of antifouling upper-layer and antibacterial sub-layer. In this work, we demonstrate a reversed surface structure which integrate antibacterial upper-layer and antifouling sub-layer. These surfaces are prepared by simply casting gemini quaternary ammonium salt waterborne polyurethanes (GWPU) and their blends. Due to the high interfacial energy of gemini quaternary ammonium salt (GQAS), chain segments containing GQAS can accumulate at polymer/air interface to form an antibacterial upper-layer spontaneously during the film formation. Meanwhile, the soft segments composed of polyethylene glycol (PEG) formed the antifouling sub-layer. Our findings indicate that the combination of antibacterial upper-layer and antifouling sub-layer endow these surfaces strong, long-lasting antifouling and contact-active antibacterial properties, with a more than 99.99% killing efficiency against both gram-positive and gram-negative bacteria attached to them.

A Novel Surface Structure Consisting of Contact-active Antibacterial Upper-layer and Antifouling Sub-layer Derived from Gemini Quaternary Ammonium Salt Polyurethanes

PubMed Central

He, Wei; Zhang, Yi; Li, Jiehua; Gao, Yunlong; Luo, Feng; Tan, Hong; Wang, Kunjie; Fu, Qiang

2016-01-01

Contact-active antibacterial surfaces play a vital role in preventing bacterial contamination of artificial surfaces. In the past, numerous researches have been focused on antibacterial surfaces comprising of antifouling upper-layer and antibacterial sub-layer. In this work, we demonstrate a reversed surface structure which integrate antibacterial upper-layer and antifouling sub-layer. These surfaces are prepared by simply casting gemini quaternary ammonium salt waterborne polyurethanes (GWPU) and their blends. Due to the high interfacial energy of gemini quaternary ammonium salt (GQAS), chain segments containing GQAS can accumulate at polymer/air interface to form an antibacterial upper-layer spontaneously during the film formation. Meanwhile, the soft segments composed of polyethylene glycol (PEG) formed the antifouling sub-layer. Our findings indicate that the combination of antibacterial upper-layer and antifouling sub-layer endow these surfaces strong, long-lasting antifouling and contact-active antibacterial properties, with a more than 99.99% killing efficiency against both gram-positive and gram-negative bacteria attached to them. PMID:27561546

Transpiration in response to variation in microclimate and soil moisture in southeastern deciduous forests.

PubMed

Oren, Ram; Pataki, Diane E

2001-05-01

Responses of forests to changes in environmental conditions reflect the integrated behavior of their constituent species. We investigated sap flux-scaled transpiration responses of two species prevalent in upland eastern hardwood forests, Quercus alba in the upper canopy and Acer rubrum in the low to mid canopy, to changes in photosynthetically active radiation above the canopy (Q o ), vapor pressure deficit within the canopy (D), and soil moisture depletion during an entire growing season. Water loss before bud break (presumably through the bark) increased linearly with D, reaching 8% of daily stand transpiration (E C ) as measured when leaf area index was at maximum, and accounting for 5% of annual water loss. After leaves were completely expanded and when soil moisture was high, sap flux-scaled daily E C increased linearly with the daily sum of Q o . Species differences in this response were observed. Q. alba reached a maximum transpiration at low Q o , while A. rubrum showed increasing transpiration with Q o at all light levels. Daily E C increased in response to daily average D, with an asymptotic response due to the behavior of Q. alba. Transpiration of A. rubrum showed a greater response to soil moisture depletion than did that of Q. alba. When evaluated at a half-hourly scale under high Q o , mean canopy stomatal conductance (G S ) of individuals decreased with D. The sensitivity of G S to D was greater in species with higher intrinsic G S . Regardless of position in the canopy, diffuse-porous species in this and an additional, more mesic stand showed higher G S and greater stomatal sensitivity to environmental variation than do ring-porous species.

Linking canopy phenology to the seasonality of biosphere-atmosphere interactions in a temperate deciduous forest (Invited)

NASA Astrophysics Data System (ADS)

Richardson, A. D.; Toomey, M. P.; Aubrecht, D.; Sonnentag, O.; Ryu, Y.; Hilker, T.

2013-12-01

Phenology - the annual rhythm of canopy development and senescence - is a key control on the seasonality of surface-atmosphere fluxes of CO2, water, and energy. Phenology is also a highly sensitive indicator of the biological impacts of climate change. In many biomes, there is strong evidence of trends towards earlier spring onset, and later autumn senescence, over the last four decades. These shifts in phenology may play an imprortant role in mitigating - or amplifying - feedbacks between terrestrial ecosystems and the climate system. To better understand relationships between canopy structure and function in a temperate deciduous forest, we installed a wide array of radiometric instruments and imaging sensors near the top of a 40-m high tower at Harvard Forest beginning in 2011. Our data set includes: - incoming and outgoing visible (including incoming direct and diffuse components), shortwave, and longwave radiation; - narrowband (five visible and three near-infrared channels) canopy reflectance; - leaf area index (LAI, from continuous below-canopy digital cover photography), fraction of absorbed photosynthetically active radiation (fAPAR, from above- and below-canopy quantum sensors), normalized difference vegetation index (NDVI, from broad- and narrow-band radiometric sensors), and photochemical reflectance index (PRI, from narrow-band radiometric sensors); - visible and near-infrared PhenoCam (http://phenocam.sr.unh.edu) canopy imagery; - multi-angular narrowband hyperspectral canopy reflectance (AMSPEC, in 2012); and - beginning in 2013, hyperspectral and thermal canopy imagery. Together with eddy covariance measurements of CO2 and water fluxes from the Harvard Forest AmeriFlux site, located in similar forest about 1 km to the east, on-the-ground visual observations of phenology, and continuous stem diameter measurements with automated band dendrometers, these data provide an unusually detailed view of phenological processes at scales from leaves to trees to the forest canopy. In this presentation I will discuss our efforts to use these data for model-based analyses that link phenology to biosphere-atmosphere interactions through the cycling of CO2, water and energy. As an example, I will describe how we are using a two-layer canopy model, in conjunction with both LAI data and narrowband reflectance indices, to improve model representation of the seasonal cycle of canopy photosynthesis and hence understanding of surface-atmosphere fluxes of CO2.

Underwater Flow Visualization Methods in the Upper Layer of the Ocean.

DTIC Science & Technology

1981-05-22

AD-A107 919 NAVAL RESEARCH LAB WASHINGTON DC F/G 8/3 UNDERWATER FLOW VISUALIZATION METHODS IN T1E UPPER LAYER OF THE-ETC(U) AMAY 81 J R MCGRATH, C M...S.bOti1.) S. TYPE OF REPORT I PERIOD COVERED UNDERWATER FLOW VISUALIZATION METHODS Interim report on a continuingNRL problem. IN THE UPPER LAYER OF THE...56 UNDERWATER FLOW VISUALIZATION METHODS IN THE UPPER LAYER OF THE OCEAN 1. INTRODUCTION a) Purpose This report documents the

Influence of an urban canopy model and PBL schemes on vertical mixing for air quality modeling over Greater Paris

NASA Astrophysics Data System (ADS)

Kim, Youngseob; Sartelet, Karine; Raut, Jean-Christophe; Chazette, Patrick

2015-04-01

Impacts of meteorological modeling in the planetary boundary layer (PBL) and urban canopy model (UCM) on the vertical mixing of pollutants are studied. Concentrations of gaseous chemical species, including ozone (O3) and nitrogen dioxide (NO2), and particulate matter over Paris and the near suburbs are simulated using the 3-dimensional chemistry-transport model Polair3D of the Polyphemus platform. Simulated concentrations of O3, NO2 and PM10/PM2.5 (particulate matter of aerodynamic diameter lower than 10 μm/2.5 μm, respectively) are first evaluated using ground measurements. Higher surface concentrations are obtained for PM10, PM2.5 and NO2 with the MYNN PBL scheme than the YSU PBL scheme because of lower PBL heights in the MYNN scheme. Differences between simulations using different PBL schemes are lower than differences between simulations with and without the UCM and the Corine land-use over urban areas. Regarding the root mean square error, the simulations using the UCM and the Corine land-use tend to perform better than the simulations without it. At urban stations, the PM10 and PM2.5 concentrations are over-estimated and the over-estimation is reduced using the UCM and the Corine land-use. The ability of the model to reproduce vertical mixing is evaluated using NO2 measurement data at the upper air observation station of the Eiffel Tower, and measurement data at a ground station near the Eiffel Tower. Although NO2 is under-estimated in all simulations, vertical mixing is greatly improved when using the UCM and the Corine land-use. Comparisons of the modeled PM10 vertical distributions to distributions deduced from surface and mobile lidar measurements are performed. The use of the UCM and the Corine land-use is crucial to accurately model PM10 concentrations during nighttime in the center of Paris. In the nocturnal stable boundary layer, PM10 is relatively well modeled, although it is over-estimated on 24 May and under-estimated on 25 May. However, PM10 is under-estimated on both days in the residual layer, and over-estimated on both days over the residual layer. The under-estimations in the residual layer are partly due to difficulties to estimate the PBL height, to an over-estimation of vertical mixing during nighttime at high altitudes and to uncertainties in PM10 emissions. The PBL schemes and the UCM influence the PM vertical distributions not only because they influence vertical mixing (PBL height and eddy-diffusion coefficient), but also horizontal wind fields and humidity. However, for the UCM, it is the influence on vertical mixing that impacts the most the PM10 vertical distribution below 1.5 km.

Increased Spatial Variability and Intensification of Extreme Monsoon Rainfall due to Urbanization.

PubMed

Paul, Supantha; Ghosh, Subimal; Mathew, Micky; Devanand, Anjana; Karmakar, Subhankar; Niyogi, Dev

2018-03-02

While satellite data provides a strong robust signature of urban feedback on extreme precipitation; urbanization signal is often not so prominent with station level data. To investigate this, we select the case study of Mumbai, India and perform a high resolution (1 km) numerical study with Weather Research and Forecasting (WRF) model for eight extreme rainfall days during 2014-2015. The WRF model is coupled with two different urban schemes, the Single Layer Urban Canopy Model (WRF-SUCM), Multi-Layer Urban Canopy Model (WRF-MUCM). The differences between the WRF-MUCM and WRF-SUCM indicate the importance of the structure and characteristics of urban canopy on modifications in precipitation. The WRF-MUCM simulations resemble the observed distributed rainfall. WRF-MUCM also produces intensified rainfall as compared to the WRF-SUCM and WRF-NoUCM (without UCM). The intensification in rainfall is however prominent at few pockets of urban regions, that is seen in increased spatial variability. We find that the correlation of precipitation across stations within the city falls below statistical significance at a distance greater than 10 km. Urban signature on extreme precipitation will be reflected on station rainfall only when the stations are located inside the urban pockets having intensified precipitation, which needs to be considered in future analysis.

Myeloma cell-induced disruption of bone remodelling compartments leads to osteolytic lesions and generation of osteoclast-myeloma hybrid cells.

PubMed

Andersen, Thomas L; Søe, Kent; Sondergaard, Teis E; Plesner, Torben; Delaisse, Jean-Marie

2010-02-01

Osteolytic lesions are a hallmark of multiple myeloma. They are due to the hyperactivity of bone resorbing osteoclasts and hypoactivity of bone forming osteoblasts, in response to neighbouring myeloma cells. This study identified a structure that deeply affects this response, because of its impact on the physical organisation of the myeloma cell microenvironment. The proximity between myeloma cells and osteoclasts or osteoblasts was shown to be conditioned by the recently discovered layer of flat cells that separates the osteoclasts and osteoblasts from the bone marrow, by forming a canopy over bone remodelling compartment (BRC). These canopies are frequently disrupted in myeloma, and this disruption correlates with increased proximity and density of myeloma cells. In vitro evidence indicates that this disruption may be due to direct contact between myeloma and BRC canopy cells. Importantly, this disruption and increased proximity and density of myeloma cells coincides with key myeloma-induced bone events, such as osteolytic lesions, impaired bone formation despite increased bone resorption, and fusion of myeloma cells with osteoclasts thereby forming myeloma-osteoclast hybrid cells. These findings strongly support a critical role of BRC canopies in myeloma-induced bone disease. BRC canopies could therefore be considered as a new therapeutic target.

Optimizing the Determination of Roughness Parameters for Model Urban Canopies

NASA Astrophysics Data System (ADS)

Huq, Pablo; Rahman, Auvi

2018-05-01

We present an objective optimization procedure to determine the roughness parameters for very rough boundary-layer flow over model urban canopies. For neutral stratification the mean velocity profile above a model urban canopy is described by the logarithmic law together with the set of roughness parameters of displacement height d, roughness length z_0 , and friction velocity u_* . Traditionally, values of these roughness parameters are obtained by fitting the logarithmic law through (all) the data points comprising the velocity profile. The new procedure generates unique velocity profiles from subsets or combinations of the data points of the original velocity profile, after which all possible profiles are examined. Each of the generated profiles is fitted to the logarithmic law for a sequence of values of d, with the representative value of d obtained from the minima of the summed least-squares errors for all the generated profiles. The representative values of z_0 and u_* are identified by the peak in the bivariate histogram of z_0 and u_* . The methodology has been verified against laboratory datasets of flow above model urban canopies.

Application of transilient turbulent theory to study interactions between the atmospheric boundary layer and forest canopies

NASA Astrophysics Data System (ADS)

Inclán, M. G.; Forkel, R.; Dlugi, R.; Stull, R. B.

1996-06-01

The new Forest-Land-Atmosphere ModEl called FLAME is presented. The first-order, nonlocal turbulence closure called transilient turbulence theory (Stull, 1993) is applied to study the interactions between a forested land-surface and the atmospheric boundary layer (ABL). The transilient scheme is used for unequal vertical grid spacing and includes the effects of drag, wake turbulence, and interference to vertical mixing by plant elements. Radiation transfer within the vegetation and the equations for the energy balance at the leaf surface have been taken from Norman (1979). Among others, the model predicts profiles of air temperature, humidity and wind velocity within the ABL, sensible and latent heat fluxes from the soil and the vegetation, the stomata and aerodynamic resistances, as well as profiles of temperature and water content in the soil. Preliminary studies carried out for a cloud free day and idealized initial conditions are presented. The canopy height is 30 m within a vertical domain of 3 km. The model is able to capture some of the effects usually observed within and above forested areas, including the relative wind speed maximum in the trunk space and the counter gradient-fluxes in the lower part of the plant stand. Of special interest is the determination of the location and magnitude of the turbulent mixing between model layers, which permits one to identify the effects of large eddies transporting momentum and scalar quantities into the canopy. A comparison between model simulations and field measurements will be presented in a future paper.

Modeling Energy and Mass Fluxes Over a Vineyard Using the Acasa Model

NASA Astrophysics Data System (ADS)

Marras, S.; Bellucco, V.; Pyles, D.; Falk, M.; Sirca, C.; Duce, P.; Snyder, R. L.; Paw U, K.; Spano, D.

2012-12-01

Energy and mass fluxes are widely monitored over natural ecosystems by the Eddy Covariance (EC) towers within the FLUXNET monitoring network. Only a few studies focused on EC measurements over tree crops and vines, and there is a lack of information useful to parameterize crop and flux models over such systems. The aim of this study was to improve our knowledge about the performance of the land surface model ACASA (Advanced Canopy-Atmosphere-Soil Algorithm) in estimating energy, water, and carbon fluxes over a typical Mediterranean vineyard located in Southern Sardinia (Italy). ACASA estimates turbulent fluxes per 20 canopy layers (10 layers within and 10 above the canopy) and 15 soil layers, using third-order closure equations. CO2 fluxes are estimated using a combination of Ball-Berry and Farquhar equations. The model parameters derived from literature, from a previous work conducted in Tuscany (Italy) and from direct measurements collected in the experimental site of this study. An Eddy Covariance measurement tower was installed to continuously monitor sensible and latent heat, and CO2 fluxes, in conjunction with a net radiometer, and soil heat flux plates from June 2009. A meteorological station was also set up for ancillary measurements. Model performance was evaluated by RMSE and linear regression statistics. Results for the energy balance components and CO2 exchanges will be presented. Detailed analysis was devoted to evaluate the model ability in estimating the vineyard evapotranspiration. This term of the energy balance is, in fact, important for farmers since they are mainly interested in quantify crop water requirements for a better irrigation management.

Vertical divergence of fogwater fluxes above a spruce forest

NASA Astrophysics Data System (ADS)

Burkard, R.; Eugster, W.; Wrzesinsky, T.; Klemm, O.

Two almost identical eddy covariance measurement setups were used to measure the fogwater fluxes to a forest ecosystem in the "Fichtelgebirge" mountains (Waldstein research site, 786 m a.s.l.) in Germany. During the first experiment, an intercomparison was carried out with both setups running simultaneously at the same measuring height on a meteorological tower, 12.5 m above the forest canopy. The results confirmed a close agreement of the turbulent fluxes between the two setups, and allowed to intercalibrate liquid water content (LWC) and gravitational fluxes. During the second experiment, the setups were mounted at a height of 12.5 and 3 m above the canopy, respectively. For the 22 fog events, a persistent negative flux divergence was observed with a greater downward flux at the upper level. To extrapolate the turbulent liquid water fluxes measured at height z to the canopy of height hc, a conversion factor 1/[1+0.116( z- hc)] was determined. For the fluxes of nonvolatile ions, no such correction is necessary since the net evaporation of the fog droplets appears to be the primary cause of the vertical flux divergence. Although the net evaporation reduces the liquid water flux reaching the canopy, it is not expected to change the absolute amount of ions dissolved in fogwater.

Multiresolution quantification of deciduousness in West-Central African forests

NASA Astrophysics Data System (ADS)

Viennois, G.; Barbier, N.; Fabre, I.; Couteron, P.

2013-11-01

The characterization of leaf phenology in tropical forests is of major importance for forest typology as well as to improve our understanding of earth-atmosphere-climate interactions or biogeochemical cycles. The availability of satellite optical data with a high temporal resolution has permitted the identification of unexpected phenological cycles, particularly over the Amazon region. A primary issue in these studies is the relationship between the optical reflectance of pixels of 1 km or more in size and ground information of limited spatial extent. In this paper, we demonstrate that optical data with high to very-high spatial resolution can help bridge this scale gap by providing snapshots of the canopy that allow discernment of the leaf-phenological stage of trees and the proportions of leaved crowns within the canopy. We also propose applications for broad-scale forest characterization and mapping in West-Central Africa over an area of 141 000 km2. Eleven years of the Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) data were averaged over the wet and dry seasons to provide a data set of optimal radiometric quality at a spatial resolution of 250 m. Sample areas covered at a very-high (GeoEye) and high (SPOT-5) spatial resolution were used to identify forest types and to quantify the proportion of leaved trees in the canopy. The dry-season EVI was positively correlated with the proportion of leaved trees in the canopy. This relationship allowed the conversion of EVI into canopy deciduousness at the regional level. On this basis, ecologically important forest types could be mapped, including young secondary, open Marantaceae, Gilbertiodendron dewevrei and swamp forests. We show that in West-Central African forests, a large share of the variability in canopy reflectance, as captured by the EVI, is due to variation in the proportion of leaved trees in the upper canopy, thereby opening new perspectives for biodiversity and carbon-cycle applications.

Multiresolution quantification of deciduousness in West Central African forests

NASA Astrophysics Data System (ADS)

Viennois, G.; Barbier, N.; Fabre, I.; Couteron, P.

2013-04-01

The characterization of leaf phenology in tropical forests is of major importance and improves our understanding of earth-atmosphere-climate interactions. The availability of satellite optical data with a high temporal resolution has permitted the identification of unexpected phenological cycles, particularly over the Amazon region. A primary issue in these studies is the relationship between the optical reflectance of pixels of 1 km or more in size and ground information of limited spatial extent. In this paper, we demonstrate that optical data with high to very-high spatial resolution can help bridge this scale gap by providing snapshots of the canopy that allow discernment of the leaf-phenological stage of trees and the proportions of leaved crowns within the canopy. We also propose applications for broad-scale forest characterization and mapping in West Central Africa over an area of 141 000 km2. Eleven years of the Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) data were averaged over the wet and dry seasons to provide a dataset of optimal radiometric quality at a spatial resolution of 250 m. Sample areas covered at a very-high (GeoEye) and high (SPOT-5) spatial resolution were used to identify forest types and to quantify the proportion of leaved trees in the canopy. The dry season EVI was positively correlated with the proportion of leaved trees in the canopy. This relationship allowed the conversion of EVI into canopy deciduousness at the regional level. On this basis, ecologically important forest types could be mapped, including young secondary, open Marantaceae, Gilbertiodendron dewevrei and swamp forests. We show that in west central African forests, a large share of the variability in canopy reflectance, as captured by the EVI, is due to variation in the proportion of leaved trees in the upper canopy, thereby opening new perspectives for biodiversity and carbon-cycle applications.

Towards a more detailed representation of the energy balance in a coupled land surface model

NASA Astrophysics Data System (ADS)

Ryder, J.; Polcher, J.; Luyssaert, S.

2012-04-01

Currently, the land-surface region sequesters 25% of global CO2 emissions. In addition to climate change, increasing atmospheric CO2 concentrations, fertilisation and nitrogen deposition, this sink is thought to be largely due to land management. When applied deliberately to enhance the terrestrial carbon sink strength, this land management may have unintended effects on the energy budget, potentially offsetting the radiative effect of carbon sequestration. As with other land surface models, the present release of ORCHIDEE (the land surface model of the IPSL Earth system model) has difficulties in reproducing consistently observed energy balances (Pitman et al., 2009; Jimenez et al., 2011; de Noblet-Ducoudré et al., 2011). Hence, the model must be improved to be better able to study the radiative effect of forest management and land use change. This observation serves as a starting point in this research - improving the level of detail in energy balance simulations of the surface layer. We here outline the structure of a new detailed and practical simulation of the energy budget that is currently under development within the surface model ORCHIDEE, and will be coupled to the atmospheric model LMDZ. The most detailed simulations of the surface layer energy budget are detailed iterative multi-layer canopy models, such as Ogeé et al. (2003), which are linked to specific measurement sites and do not interact with the atmosphere. In this current project, we aim to create a model that will implement the insights obtained in those previous studies and improve upon the present ORCHIDEE parameterisation, but will run stably and efficiently when coupled to an atmospheric model. This work involves a replacement of the existing allocation of 14 different types of vegetation within each surface tile (the 'Plant Functional Types') by a more granular scheme that can be modified to reflect changes in attributes such as vegetation density, leaf type, distribution (clumping factors), age and height of vegetation within the surface tile. There will be the implementation of more than one canopy vegetation layer to simulate the effects of scalar gradients within the canopy for determining, more accurately, the net sensible and latent heat fluxes that are passed to the atmosphere. The model will include representation of characteristics such as in-canopy transport, coupling with sensible heat flux from the soil, a multilayer radiation budget and stomatal resistance, and interaction with the bare soil flux within the canopy space (and also with snow pack). We present how the implicit coupling approach of Polcher et al. (1998) and Best et al. (2004) is to be extended to a multilayer scenario, present initial sensitivity studies and outline future testing scenarios and validation plans.

Vegetation canopy cover effects on sediment erosion processes in the upper Colorado River Basin mancos shale formation, Price, Utah

USDA-ARS?s Scientific Manuscript database

This study provides new parameterizations for applying the Rangeland Hydrology and Erosion Model (RHEM) on the highly erosive, rangeland saline soils of the Mancos Shale formation in the Price-San Rafael River Basin in east central Utah. Calibrated hydrologic parameters (Kss and K') values are gener...

Scab severity in relation to hedge pruning pecan trees in the Southeastern USA

USDA-ARS?s Scientific Manuscript database

Scab is the most damaging disease of pecan in the Southeastern USA. Pecan trees are tall (up to 30+ m), and managing disease in the upper canopy is problematic. Hedge pruning trees to ~12 m is being explored to facilitate efficacy of ground-based fungicide sprays, but resulting vigorous shoot growth...

Arthropod abundance and seasonal bird use of bottomland forest harvest gaps

Treesearch

Christopher E. Moorman; Liessa T. Woen; John C. Kilgo; James L. Hanula; Scott Horn; Michael D. Ulyshen

2012-01-01

We investigated the influence of arthropod abundance and vegetation structure on shifts in avian use of canopy gap, gap edge, and surrounding forest understory in a bottomland hardwood forest in the Upper Coastal Plain of South Carolina. We compared captures of foliage-gleaning birds among locations during four periods (spring migration, breeding, post-breeding, and...

Seeing the trees for the forest: mapping vegetation biodiversity in coastal Oregon forests.

Treesearch

Sally. Duncan

2003-01-01

In order to address policy issues relating to biodiversity, productivity, and sustainability, we need detailed understanding of forest vegetation at broad geographic and time scales. Most existing maps developed from satellite imagery describe only general characteristics of the upper canopy. Detailed vegetation data are available from regional grids of field plots,...

Vegetation responses to simulated emerald ash borer infestation in Fraxinus nigra dominated wetlands of Upper Michigan, USA

Treesearch

Joshua C. Davis; Joseph P. Shannon; Nicholas W. Bolton; Randall K. Kolka; Thomas G. Pypker

2017-01-01

The invasive emerald ash borer (EAB) (Agrilus planipennis Fairmaire (Coleoptera: Buprestidae)) is a significant threat to biodiversity and ecosystem processes in North American forests. Of particular concern is the fate of Fraxinus nigra (black ash), which is frequently a dominant canopy species across much of its range. To...

Wood CO2 efflux in a primary tropical rain forest

Treesearch

Molly A. Cavaleri; Steven F. Oberbauer; Michael G. Ryan

2006-01-01

The balance between photosynthesis and plant respiration in tropical forests may substantially affect the global carbon cycle. Woody tissue CO2 efflux is a major component of total plant respiration, but estimates of ecosystem-scale rates are uncertain because of poor sampling in the upper canopy and across landscapes. To overcome these problems, we used a portable...

Estimating Leaf Nitrogen of Eastern Cottonwood Trees with a Chlorophyll Meter

Treesearch

Benoit Moreau; Emile S. Gardiner; John A. Stanturf; Ronald K. Fisher

2004-01-01

The utility of the SPAD-502 chlorophyll meter for nondestructive and rapid field determination of leaf nitrogen (N) has been demonstrated in agricultural crops, but this technology has not yet been extended to woody crop applications. Upper canopy leaves from a 5-year-old plantation of two eastern cottonwood (Populus deltoides Bartr. ex Marsh.)...

A Corrected Formulation of the Multilayer Model (MLM) for Inferring Gaseous Dry Deposition to Vegetated Surfaces

NASA Technical Reports Server (NTRS)

Saylor, Rick D.; Wolfe, Glenn M.; Meyers, Tilden P.; Hicks, Bruce B.

2014-01-01

The Multilayer Model (MLM) has been used for many years to infer dry deposition fluxes from measured trace species concentrations and standard meteorological measurements for national networks in the U.S., including the U.S. Environmental Protection Agency's Clean Air Status and Trends Network (CASTNet). MLM utilizes a resistance analogy to calculate deposition velocities appropriate for whole vegetative canopies, while employing a multilayer integration to account for vertically varying meteorology, canopy morphology and radiative transfer within the canopy. However, the MLM formulation, as it was originally presented and as it has been subsequently employed, contains a non-physical representation related to the leaf-level quasi-laminar boundary layer resistance that affects the calculation of the total canopy resistance. In this note, the non-physical representation of the canopy resistance as originally formulated in MLM is discussed and a revised, physically consistent, formulation is suggested as a replacement. The revised canopy resistance formulation reduces estimates of HNO3 deposition velocities by as much as 38% during mid-day as compared to values generated by the original formulation. Inferred deposition velocities for SO2 and O3 are not significantly altered by the change in formulation (less than 3%). Inferred deposition loadings of oxidized and total nitrogen from CASTNet data may be reduced by 10-20% and 5-10%, respectively, for the Eastern U. S. when employing the revised formulation of MLM as compared to the original formulation.

Assessment of Planetary-Boundary-Layer Schemes in the Weather Research and Forecasting Model Within and Above an Urban Canopy Layer

NASA Astrophysics Data System (ADS)

Ferrero, Enrico; Alessandrini, Stefano; Vandenberghe, Francois

2018-03-01

We tested several planetary-boundary-layer (PBL) schemes available in the Weather Research and Forecasting (WRF) model against measured wind speed and direction, temperature and turbulent kinetic energy (TKE) at three levels (5, 9, 25 m). The Urban Turbulence Project dataset, gathered from the outskirts of Turin, Italy and used for the comparison, provides measurements made by sonic anemometers for more than 1 year. In contrast to other similar studies, which have mainly focused on short-time periods, we considered 2 months of measurements (January and July) representing both the seasonal and the daily variabilities. To understand how the WRF-model PBL schemes perform in an urban environment, often characterized by low wind-speed conditions, we first compared six PBL schemes against observations taken by the highest anemometer located in the inertial sub-layer. The availability of the TKE measurements allows us to directly evaluate the performances of the model; results of the model evaluation are presented in terms of quantile versus quantile plots and statistical indices. Secondly, we considered WRF-model PBL schemes that can be coupled to the urban-surface exchange parametrizations and compared the simulation results with measurements from the two lower anemometers located inside the canopy layer. We find that the PBL schemes accounting for TKE are more accurate and the model representation of the roughness sub-layer improves when the urban model is coupled to each PBL scheme.

Attribution and Characterisation of Sclerophyll Forested Landscapes Over Large Areas

NASA Astrophysics Data System (ADS)

Jones, Simon; Soto-Berelov, Mariela; Suarez, Lola; Wilkes, Phil; Woodgate, Will; Haywood, Andrew

2016-06-01

This paper presents a methodology for the attribution and characterisation of Sclerophyll forested landscapes over large areas. First we define a set of woody vegetation data primitives (e.g. canopy cover, leaf area index (LAI), bole density, canopy height), which are then scaled-up using multiple remote sensing data sources to characterise and extract landscape woody vegetation features. The advantage of this approach is that vegetation landscape features can be described from composites of these data primitives. The proposed data primitives act as building blocks for the re-creation of past woody characterisation schemes as well as allowing for re-compilation to support present and future policy and management and decision making needs. Three main research sites were attributed; representative of different sclerophyll woody vegetated systems (Box Iron-bark forest; Mountain Ash forest; Mixed Species foothills forest). High resolution hyperspectral and full waveform LiDAR data was acquired over the three research sites. At the same time, land management agencies (Victorian Department of Environment, Land Water and Planning) and researchers (RMIT, CRC for Spatial Information and CSIRO) conducted fieldwork to collect structural and functional measurements of vegetation, using traditional forest mensuration transects and plots, terrestrial lidar scanning and high temporal resolution in-situ autonomous laser (VegNet) scanners. Results are presented of: 1) inter-comparisons of LAI estimations made using ground based hemispherical photography, LAI 2200 PCA, CI-110 and terrestrial and airborne laser scanners; 2) canopy height and vertical canopy complexity derived from airborne LiDAR validated using ground observations; and, 3) time-series characterisation of land cover features. 1. Accuracy targets for remotely sensed LAI products to match within ground based estimates are ± 0.5 LAI or a 20% maximum (CEOS/GCOS) with new aspirational targets of 5%). In this research we conducted a total of 67 ground-based method-to-method pairwise comparisons across 11 plots in five sites, incorporating the previously mentioned LAI methods. Out of the 67 comparisons, 29 had an RMSE ≥ 0.5 LAIe. This has important implications for the validation of remotely sensed products since ground based techniques themselves exhibit LAI variations greater than internationally recommended guidelines for satellite product accuracies. 2. Two methods of canopy height derivation are proposed and tested over a large area (4 Million Ha). 99th percentile maximum height achieved a RMSE of 6.6%, whilst 95th percentile dominant height a RMSE = 10.3%. Vertical canopy complexity (i.e. the number of forest layers of strata) was calculated as the local maxima of vegetation density within the LiDAR canopy profile and determined using a cubic spline smoothing of Pgap. This was then validated against in-situ and LiDAR observations of canopy strata with an RMSE 0.39 canopy layers. 3. Preliminary results are presented of landcover characterisation using LandTrendr analysis of Landsat LEDAPS data. kNN is then used to link these features to a dense network of 800 field plots sites.

Trade-offs between water transport capacity and drought resistance in neotropical canopy liana and tree species.

PubMed

De Guzman, Mark E; Santiago, Louis S; Schnitzer, Stefan A; Álvarez-Cansino, Leonor

2017-10-01

In tropical forest canopies, it is critical for upper shoots to efficiently provide water to leaves for physiological function while safely preventing loss of hydraulic conductivity due to cavitation during periods of soil water deficit or high evaporative demand. We compared hydraulic physiology of upper canopy trees and lianas in a seasonally dry tropical forest to test whether trade-offs between safety and efficiency of water transport shape differences in hydraulic function between these two major tropical woody growth forms. We found that lianas showed greater maximum stem-specific hydraulic conductivity than trees, but lost hydraulic conductivity at less negative water potentials than trees, resulting in a negative correlation and trade-off between safety and efficiency of water transport. Lianas also exhibited greater diurnal changes in leaf water potential than trees. The magnitude of diurnal water potential change was negatively correlated with sapwood capacitance, indicating that lianas are highly reliant on conducting capability to maintain leaf water status, whereas trees relied more on stored water in stems to maintain leaf water status. Leaf nitrogen concentration was related to maximum leaf-specific hydraulic conductivity only for lianas suggesting that greater water transport capacity is more tied to leaf processes in lianas compared to trees. Our results are consistent with a trade-off between safety and efficiency of water transport and may have implications for increasing liana abundance in neotropical forests. © The Author 2016. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Numerical Simulation of Parachute Inflation Process by IB Method

NASA Astrophysics Data System (ADS)

Miyoshi, Masaya; Mori, Koichi; Nakamura, Yoshiaki

In the present study the deformation and motion of a parachute in the process of inflation are simulated by applying the immersed boundary technique in a fluid-structure coupling solver. It was found from simulated results that the canopy is first inflated in the normal direction to the uniform flow (in the lateral direction), and then its apex is pulled by a vortex ring generated near the canopy's outer surface due to its negative pressure. After the end of this inflation process, the canopy moves in the tangential direction to the spherical surface, the center of which is located at the payload location. This motion is caused by the breakup of an initial axisymmetric vortex, where many vortices are generated from the shear layer. The predicted maximum parachute opening force is twice as large as the payload force in the steady state, which is in good agreement with experiment.

Remote sensing of Earth terrain

NASA Technical Reports Server (NTRS)

Kong, J. A.

1993-01-01

Progress report on remote sensing of Earth terrain covering the period from Jan. to June 1993 is presented. Areas of research include: radiative transfer model for active and passive remote sensing of vegetation canopy; polarimetric thermal emission from rough ocean surfaces; polarimetric passive remote sensing of ocean wind vectors; polarimetric thermal emission from periodic water surfaces; layer model with tandom spheriodal scatterers for remote sensing of vegetation canopy; application of theoretical models to active and passive remote sensing of saline ice; radiative transfer theory for polarimetric remote sensing of pine forest; scattering of electromagnetic waves from a dense medium consisting of correlated mie scatterers with size distributions and applications to dry snow; variance of phase fluctuations of waves propagating through a random medium; polarimetric signatures of a canopy of dielectric cylinders based on first and second order vector radiative transfer theory; branching model for vegetation; polarimetric passive remote sensing of periodic surfaces; composite volume and surface scattering model; and radar image classification.

A First-Order Radiative Transfer Model for Microwave Radiometry of Forest Canopies at L-Band

NASA Technical Reports Server (NTRS)

Kurum, Mehmet; Lang, Roger H.; O'Neill, Peggy E.; Joseph, Alicia T.; Jackson, Thomas J.; Cosh, Michael H.

2011-01-01

In this study, a first-order radiative transfer (RT) model is developed to more accurately account for vegetation canopy scattering by modifying the basic Tau-Omega model (the zero-order RT solution). In order to optimally utilize microwave radiometric data in soil moisture (SM) retrievals over vegetated landscapes, a quantitative understanding of the relationship between scattering mechanisms within vegetation canopies and the microwave brightness temperature is desirable. The first-order RT model is used to investigate this relationship and to perform a physical analysis of the scattered and emitted radiation from vegetated terrain. This model is based on an iterative solution (successive orders of scattering) of the RT equations up to the first order. This formulation adds a new scattering term to the . model. The additional term represents emission by particles (vegetation components) in the vegetation layer and emission by the ground that is scattered once by particles in the layer. The model is tested against 1.4-GHz brightness temperature measurements acquired over deciduous trees by a truck-mounted microwave instrument system called ComRAD in 2007. The model predictions are in good agreement with the data, and they give quantitative understanding for the influence of first-order scattering within the canopy on the brightness temperature. The model results show that the scattering term is significant for trees and modifications are necessary to the . model when applied to dense vegetation. Numerical simulations also indicate that the scattering term has a negligible dependence on SM and is mainly a function of the incidence angle and polarization of the microwave observation. Index Terms Emission,microwave radiometry, scattering, soil, vegetation.

A First-Order Radiative Transfer Model for Microwave Radiometry of Forest Canopies at L-Band

NASA Technical Reports Server (NTRS)

Kurum, Mehmet; Lang, Roger H.; O'Neill, Peggy E.; Joseph, Alicia T.; Jackson, Thomas J.; Cosh, Michael H.

2010-01-01

In this study, a new first-order radiative transfer (RT) model is developed to more accurately account for vegetation canopy scattering by modifying the basic r-co model (the zero-order RT solution). In order to optimally utilize microwave radiometric data in soil moisture (SM) retrievals over moderately to densely vegetated landscapes, a quantitative understanding of the relationship between scattering mechanisms within vegetation canopies and the microwave brightness temperature is desirable. A first-order RT model is used to investigate this relationship and to perform a physical analysis of the scattered and emitted radiation from vegetated terrain. The new model is based on an iterative solution (successive orders of scattering) of the RT equations up to the first order. This formulation adds a new scattering term to the i-w model. The additional term represents emission by particles (vegetation components) in the vegetation layer and emission by the ground that is scattered once by particles in the layer. The new model is tested against 1.4 GHz brightness temperature measurements acquired over deciduous trees by a truck-mounted microwave instrument system called ComRAD in 2007. The model predictions are in good agreement with the data and they give quantitative understanding for the influence of first-order scattering within the canopy on the brightness temperature. The model results show that the scattering term is significant for trees and modifications are necessary to the T-w model when applied to dense vegetation. Numerical simulations also indicate that the scattering term has a negligible dependence on SM and is mainly a function of the angle and polarization of the microwave observation.

Seasonal and interannual variability of canopy transpiration of a hedgerow in southern England.

PubMed

Herbst, Mathias; Roberts, John M; Rosier, Paul T W; Gowing, David J

2007-03-01

Transpiration from a hawthorn (Crataegus monogyna L.) dominated hedgerow in southern England was measured continuously over two growing seasons by the sap flow technique. Accompanying measurements of structural parameters, microclimate and leaf stomatal and boundary layer conductances were used to establish the driving factors of hedgerow transpiration. Observed transpiration rates, reaching peak values of around 8 mm day(-1) and a seasonal mean of about 3.5 mm day(-1), were higher than those reported for most other temperate deciduous woodlands, except short-rotation coppice and wet woodlands. The high rates were caused by the structural and physiological characteristics of hawthorn leaves, which exhibited much higher stomatal and boundary-layer conductances than those of the second-most abundant woody species in the hedgerow, field maple (Acer campestre L.). Only in the hot summer of 2003 did stomatal conductance, and thus transpiration, decrease substantially. The hedgerow canopy was always closely coupled to the atmosphere. Hedgerow transpiration equaled potential evaporation (calculated by the Priestley-Taylor formula) in 2003 and exceeded it in 2004, which meant that a substantial fraction of the energy (21% in 2003 and more than 37% in 2004) came from advection. Hedgerow canopy conductance (g(c)), as inferred from the sap flow data by inverting the Penman-Monteith equation, responded to solar radiation (R(G)) and vapor pressure deficit (D). Although the response to R(G) showed no systematic temporal variation, the response to D, described as g(c)(D) = g(cref) - mln(D), changed seasonally. The reference g(c) depended on leaf area index and the ratio of -m/g(cref) on long-term mean daytime D. A model is proposed based on these observations that predicts canopy conductance for the hawthorn hedge from standard weather data.

Physics of Canopy Boundary Layer Resistance for Better Quantification of Sensitivity of Deforestation Scenarios

NASA Astrophysics Data System (ADS)

Ragi, K. B.; Patel, R.

2015-12-01

A great deal of studies focused on deforestation scenarios in the tropical rainforests. Though all these efforts are useful in the understanding of its response to climate, the systematic understanding of uncertainties in representation of physical processes related to vegetation through sensitivity studies is imperative antecedently to understand the real role of vegetation in changing the climate. It is understood that the dense vegetation fluxes energy and moisture to the atmosphere. But, how much a specific process/a group of processes in the surface conditions of a specific area helps flux energy, moisture and tracers is unknown due to lack of process sensitivity studies and uncertain due to malfunctioning of processes. In this presentation, we have found a faulty parameterization, through process sensitivity studies, that would abet in energy and moisture fluxes to the atmosphere. The model we have employed is the Common Land Model2014. The area we have chosen is the Congolese rainforest. We have discovered the flaw in the leaf boundary layer resistance (LBLR), through sensitivity studies in the LSMs, especially in the dense forest regions. This LBLR is over-parameterized with constant heat transfer coefficient and characteristic dimension of leaves; and friction velocity. However, it is too scant because of overlooking of significant complex physics of turbulence and canopy roughness boundary layer to function it realistically. Our sensitivity results show the deficiency of this process and we have formulated canopy boundary layer resistance, instead of LBLR, with depending variables such as LAI, roughness length, vegetation temperature using appropriate thermo-fluid dynamical principles. We are running the sensitivity experiments with new formulations for setting the parameter values for the data not available so far. This effort would lead to better physics for the land-use change studies and demand for the retrieval of new parameters from satellite/field experiments such as leaf mass per area and specific heat capacity of vegetation.

Predicting snowpack stratigraphy in forested environments

NASA Astrophysics Data System (ADS)

Andreadis, K. M.; Lettenmaier, D. P.

2009-04-01

The interaction of forest canopies with snow accumulation and ablation processes is critical to the hydrology of many mid- and high-latitude areas. The layered character of snowpacks increases the complexity of representing these processes and deconvolving the return signal from remote sensors. However, it offers the opportunity to infer the metamorphic signature of the snowpack and to extract additional information by combining multiple frequencies (visible and passive/active microwave). Implementation of this approach requires knowledge of the stratigraphy of snowpack microphysical properties (temperature, density, and grain size), which as a practical matter can only be produced by predictive models. A mass and energy balance model for snow accumulation and ablation processes in forested environments was developed utilizing extensive measurements of snow interception and release in a maritime mountainous site in Oregon. A multiple layer component was added to the model that also takes into account snowpack stratigraphy resulting from snow densification, vapor transport and grain growth. The model, was evaluated using two years of weighing lysimeter data and was able to reproduce the SWE evolution throughout both winters beneath the canopy as well as the nearby clearing. The model was also evaluated using measurements from a BOReal Ecosystem-Atmosphere Study (BOREAS) field site in Canada to test the robustness of the canopy snow interception algorithm in a much different climate. Simulated SWE was relatively close to the observations for the forested sites, with discrepancies evident in some cases. Although the model formulation appeared robust for both types of climates, sensitivity to parameters such as snow roughness length, maximum interception capacity and number of layers suggested the magnitude of improvements of SWE simulations that might be achieved by calibration. Finally, the model's ability to replicate large-scale snowpack layer features and their effect on passive microwave emissivity was evaluated using observations from the Cold Land Processes Experiment (CLPX).

Evaluation of the photochemical reflectance index in AVIRIS imagery

NASA Technical Reports Server (NTRS)

Gamon, John A.; Roberts, Dar A.; Green, Robert O.

1995-01-01

In this paper, we evaluate the potential for extracting the 'photochemical reflectance index' (PRI; previously called the 'physiological reflectance index') from AVIRIS data. This index, which is derived from narrow-band reflectance at 531 and 570 nm, has proven to be a useful indicator of photosynthetic function at the leaf and canopy scales. At the leaf level, PRI varies with photosynthetic capacity, radiation-use efficiency, and vegetation type (unpublished data). This finding is consistent with the hypothesis that vegetation types exhibiting chronically reduced photosynthesis during periods of stress (e.g. drought-tolerant evergreens) invest proportionally more in photoprotective processes than vegetation with high photosynthetic capacity (e.g. crops or deciduous perennials). Vertical transects in tropical and boreal forest canopies have indicated declines in PRI associated with downregulation of photosynthesis at the canopy tops under sunny, dry midday conditions (unpublished data). This reduced PRI in upper canopy levels provides a further basis for examining this signal with the 'view from above' afforded by aircraft overflights. Although many factors could confound interpretation of a subtle physiological signal at the landscape scale, we conducted a preliminary examination of PRI extracted from existing, AVIRIS imagery of Stanford University's Jasper Ridge Biological Preserve obtained on the June 2nd, 1992, overflight. The goal was to use the hyperspectral capabilities of AVIRIS to evaluate the potential of this index for obtaining useful physiological data at the landscape scale. The expectation based on leaf- and canopy-level studies was that regions containing vegetation of reduced photosynthetic capacity (e.g. chaparral or evergreen woodland) would exhibit lower PRI values than regions of high capacity (e.g. deciduous woodland).

Coordinated changes in photosynthesis, water relations and leaf nutritional traits of canopy trees along a precipitation gradient in lowland tropical forest.

PubMed

Santiago, Louis S; Kitajima, Kaoru; Wright, S Joseph; Mulkey, Stephen S

2004-05-01

We investigated leaf physiological traits of dominant canopy trees in four lowland Panamanian forests with contrasting mean annual precipitation (1,800, 2,300, 3,100 and 3,500 mm). There was near complete turn-over of dominant canopy tree species among sites, resulting in greater dominance of evergreen species with long-lived leaves as precipitation increased. Mean structural and physiological traits changed along this gradient as predicted by cost-benefit theories of leaf life span. Nitrogen content per unit mass (Nmass) and light- and CO2-saturated photosynthetic rates per unit mass (Pmass) of upper canopy leaves decreased with annual precipitation, and these changes were partially explained by increasing leaf thickness and decreasing specific leaf area (SLA). Comparison of 1,800 mm and 3,100 mm sites, where canopy access was available through the use of construction cranes, revealed an association among extended leaf longevity, greater structural defense, higher midday leaf water potential, and lower Pmass, Nmass, and SLA at wetter sites. Shorter leaf life spans and more enriched foliar delta15N values in drier sites suggest greater resorption and re-metabolism of leaf N in drier forest. Greater dominance of short-lived leaves with relatively high Pmass in drier sites reflects a strategy to maximize photosynthesis when water is available and to minimize water loss and respiration costs during rainless periods. Overall, our study links coordinated change in leaf functional traits that affect productivity and nutrient cycling to seasonality in lowland tropical forests. Copyright 2004 Springer-Verlag

A grass-fire cycle eliminates an obligate-seeding tree in a tropical savanna.

PubMed

Bowman, David M J S; MacDermott, Harry J; Nichols, Scott C; Murphy, Brett P

2014-11-01

A grass-fire cycle in Australian tropical savannas has been postulated as driving the regional decline of the obligate-seeding conifer Callitris intratropica and other fire-sensitive components of the regional flora and fauna, due to proliferation of flammable native grasses. We tested the hypothesis that a high-biomass invasive savanna grass drives a positive feedback process where intense fires destroy fire-sensitive trees, and the reduction in canopy cover facilitates further invasion by grass. We undertook an observational and experimental study using, as a model system, a plantation of C. intratropica that has been invaded by an African grass, gamba (Andropogon gayanus) in the Northern Territory, Australia. We found that high grass biomass was associated with reduced canopy cover and restriction of foliage to the upper canopy of surviving stems, and mortality of adult trees was very high (>50%) even in areas with low fuel loads (1 t·ha(-1)). Experimental fires, with fuel loads >10 t·ha(-1), typical of the grass-invasion front, caused significant mortality due to complete crown scorch. Lower fuel loads cause reduced canopy cover through defoliation of the lower canopy. These results help explain how increases in grass biomass are coupled with the decline of C. intratropica throughout northern Australia by causing a switch from litter and sparse perennial grass fuels, and hence low-intensity surface fires, to heavy annual grass fuel loads that sustain fires that burn into the midstorey. This study demonstrates that changes in fuel type can alter fire regimes with substantial knock-on effects on the biota.

A grass–fire cycle eliminates an obligate-seeding tree in a tropical savanna

PubMed Central

Bowman, David M J S; MacDermott, Harry J; Nichols, Scott C; Murphy, Brett P

2014-01-01

A grass–fire cycle in Australian tropical savannas has been postulated as driving the regional decline of the obligate-seeding conifer Callitris intratropica and other fire-sensitive components of the regional flora and fauna, due to proliferation of flammable native grasses. We tested the hypothesis that a high-biomass invasive savanna grass drives a positive feedback process where intense fires destroy fire-sensitive trees, and the reduction in canopy cover facilitates further invasion by grass. We undertook an observational and experimental study using, as a model system, a plantation of C. intratropica that has been invaded by an African grass, gamba (Andropogon gayanus) in the Northern Territory, Australia. We found that high grass biomass was associated with reduced canopy cover and restriction of foliage to the upper canopy of surviving stems, and mortality of adult trees was very high (>50%) even in areas with low fuel loads (1 t·ha−1). Experimental fires, with fuel loads >10 t·ha−1, typical of the grass-invasion front, caused significant mortality due to complete crown scorch. Lower fuel loads cause reduced canopy cover through defoliation of the lower canopy. These results help explain how increases in grass biomass are coupled with the decline of C. intratropica throughout northern Australia by causing a switch from litter and sparse perennial grass fuels, and hence low-intensity surface fires, to heavy annual grass fuel loads that sustain fires that burn into the midstorey. This study demonstrates that changes in fuel type can alter fire regimes with substantial knock-on effects on the biota. PMID:25505543

Internal and external control of net photosynthesis and stomatal conductance of mature eastern white pine (Pinus strobus)

Treesearch

Chris A. Maier; R.O. Teskey

1992-01-01

Leaf gas exchange and water relations were monitored in the upper canopy of two 25 m tall eastern white pine (Pinus strobus L.) trees over two consecutive growing seasons (1986 and 1987). Examination of the seasonal and diurnal patterns of net photosynthesis and leaf conductance showed that both internal and external (environmental) factors were...

Severity of scab and its effects on fruit weight in mechanically hedge-pruned and topped pecan trees

USDA-ARS?s Scientific Manuscript database

Scab is the most damaging disease of pecan in the southeastern USA. Pecan trees can attain 44 m in height, so managing disease in the upper canopy is a problem. Fungicide is ordinarily applied using ground-based air-blast sprayers. Although mechanical hedge-pruning and topping of pecan is done for s...

Crown characteristics of juvenile loblolly pine 6 years after application of thinning and fertilization

Treesearch

Shufang Yu; Jim L. Chambers; Zhenmin Tang; James P. Barnett

2003-01-01

Total foliage dry mass and leaf area at the canopy hierarchical level of needle, shoot, branch and crown were measured in 48 trees harvested from a 14-year-old loblolly pine (Pinus taeda L.) plantation, six growing seasons after thinning and fertilization treatments. In the unthinned treatment, upper crown needles were heavier and had more leaf area...

Evaluation of Self-Propelled High-Energy Ultrasonic Atomizer on Azoxystrobin and Tebuconazole Application in Sunlit Greenhouse Tomatoes.

PubMed

Li, Yan-Jie; Li, Yi-Fan; Chen, Rong-Hua; Li, Xue-Sheng; Pan, Can-Ping; Song, Jian-Li

2018-05-28

In this study, a self-propelled high-energy ultrasonic atomizer was evaluated in terms of deposition on the canopy, the loss to the ground, and fungicide residues in cherry tomato and tomato. Artificial collectors fixed to the upper side and underside of the leaves at different depths and heights were used to collect the depositions. A reliable analytical method for determination of azoxystrobin and tebuconazole in artificial collectors and residue samples was developed by using liquid chromatography triple-quadrupole mass spectrometry. The results showed that the atomizer distributed the droplets evenly throughout the greenhouse with good uniformity (CVs below 39%). The ratio of depositions on the internal and external sides was 66⁻83%, and the ratio of depositions on the underside and upper side was 39⁻50%. There were no significant differences in depositions between two different height crops. The residues of azoxystrobin and tebuconazole in tomato and cherry tomato fruits were far below the maximum residue limits at harvest time. In general, self-propelled high-energy ultrasonic atomizer used in a greenhouse could increase the depositions, especially on the underside and internal side of the canopies, and lead to a reduction of operator exposure risk.

MEASURING INVERTEBRATE GRAZING ON SEAGRASSES AND EPIPHYTES

EPA Science Inventory

The chapter describes methods to assess grazing rates, grazer preferences, and grazer impacts, by mobile organisms living in the canopy or in the rhizome layer in any seagrass system. One set of methods quantifies grazing activity in small to medium sized, mobile organisms livin...

Hearing Protection - Needs, Technologies and Performance (Protection de l’ouie - besoins, technologies et resultats)

DTIC Science & Technology

2010-11-01

Human (AHAAH) which takes into account the whole signal transmission from the free sound field to the cochlear structures. Auditory Hazard Units...airflow around the aircraft canopy and the front structure of the aircraft (boundary layer flow noise), and the other is from internally generated noise...from the pressurisation and cockpit conditioning systems. The boundary layer flow noise is dependent upon the dynamic pressures on the aircraft and

Widespread decline of Congo rainforest greenness in the past decade.

PubMed

Zhou, Liming; Tian, Yuhong; Myneni, Ranga B; Ciais, Philippe; Saatchi, Sassan; Liu, Yi Y; Piao, Shilong; Chen, Haishan; Vermote, Eric F; Song, Conghe; Hwang, Taehee

2014-05-01

Tropical forests are global epicentres of biodiversity and important modulators of climate change, and are mainly constrained by rainfall patterns. The severe short-term droughts that occurred recently in Amazonia have drawn attention to the vulnerability of tropical forests to climatic disturbances. The central African rainforests, the second-largest on Earth, have experienced a long-term drying trend whose impacts on vegetation dynamics remain mostly unknown because in situ observations are very limited. The Congolese forest, with its drier conditions and higher percentage of semi-evergreen trees, may be more tolerant to short-term rainfall reduction than are wetter tropical forests, but for a long-term drought there may be critical thresholds of water availability below which higher-biomass, closed-canopy forests transition to more open, lower-biomass forests. Here we present observational evidence for a widespread decline in forest greenness over the past decade based on analyses of satellite data (optical, thermal, microwave and gravity) from several independent sensors over the Congo basin. This decline in vegetation greenness, particularly in the northern Congolese forest, is generally consistent with decreases in rainfall, terrestrial water storage, water content in aboveground woody and leaf biomass, and the canopy backscatter anomaly caused by changes in structure and moisture in upper forest layers. It is also consistent with increases in photosynthetically active radiation and land surface temperature. These multiple lines of evidence indicate that this large-scale vegetation browning, or loss of photosynthetic capacity, may be partially attributable to the long-term drying trend. Our results suggest that a continued gradual decline of photosynthetic capacity and moisture content driven by the persistent drying trend could alter the composition and structure of the Congolese forest to favour the spread of drought-tolerant species.

Sensitivity of stomatal conductance to soil moisture: implications for tropospheric ozone

NASA Astrophysics Data System (ADS)

Anav, Alessandro; Proietti, Chiara; Menut, Laurent; Carnicelli, Stefano; De Marco, Alessandra; Paoletti, Elena

2018-04-01

Soil moisture and water stress play a pivotal role in regulating stomatal behaviour of plants; however, in the last decade, the role of water availability has often been neglected in atmospheric chemistry modelling studies as well as in integrated risk assessments, despite the fact that plants remove a large amount of atmospheric compounds from the lower troposphere through stomata. The main aim of this study is to evaluate, within the chemistry transport model CHIMERE, the effect of soil water limitation on stomatal conductance and assess the resulting changes in atmospheric chemistry testing various hypotheses of water uptake by plants in the rooting zone. Results highlight how dry deposition significantly declines when soil moisture is used to regulate the stomatal opening, mainly in the semi-arid environments: in particular, over Europe the amount of ozone removed by dry deposition in one year without considering any soil water limitation to stomatal conductance is about 8.5 TgO3, while using a dynamic layer that ensures that plants maximize the water uptake from soil, we found a reduction of about 10 % in the amount of ozone removed by dry deposition ( ˜ 7.7 TgO3). Although dry deposition occurs from the top of canopy to ground level, it affects the concentration of gases remaining in the lower atmosphere, with a significant impact on ozone concentration (up to 4 ppb) extending from the surface to the upper troposphere (up to 650 hPa). Our results shed light on the importance of improving the parameterizations of processes occurring at plant level (i.e. from the soil to the canopy) as they have significant implications for concentration of gases in the lower troposphere and resulting risk assessments for vegetation or human health.

Wettability of soybean (Glycine max L.) leaves by foliar sprays with respect to developmental changes.

PubMed

Puente, Diana W Moran; Baur, Peter

2011-07-01

Leaf wettability considerably defines the degree of retention of water and agrochemical sprays on crop and non-target plant surfaces. Plant surface structure varies with development therefore the goal was to characterise the wettability of soybean leaf surfaces as a function of growth stage (GS). Adaxial surfaces of leaves developed at GS 16 (BBCH) were 10 times more wettable with water than leaves at the lower canopy (GS 13). By measuring contact angles of a liquid having an intermediate surface tension on different leaf patches, an illustrative wetting profile was elucidated, showing to what degree wetting varies (from > 120° to < 20°) depending on leaf patch and GS. While the critical surface tension of leaf surfaces at different GSs did not correlate with the observed changes, the slope of the Zisman plot accurately represented the increase in wettability of leaves at the upper canopy and lateral shoots (GSs 17 to 19, 21 and 24). The discrimination given by the slopes was even better than that by water contact angles. SEM observations revealed that the low wettability observed at early GSs is mainly due to a dense layer of epicuticular wax crystals. The Zisman plot slope does not represent the changes in leaf roughness (i.e. epicuticular wax deposition), but provides an insight into chemical and compositional surface characteristics at the droplet-leaf interface. The results with different wettability measurement methods demonstrated that wetting is a feature that characterises each developmental stage of soybean leaves. Positional wettability differences among leaves at the same plant and within the same leaf are relevant for performance, selectivity and plant compatibility of agrochemicals. Implications are discussed. Copyright © 2011 Society of Chemical Industry.

Quantifying small-scale spatio-temporal variability of snow stratigraphy in forests based on high-resolution snow penetrometry

NASA Astrophysics Data System (ADS)

Teich, M.; Hagenmuller, P.; Bebi, P.; Jenkins, M. J.; Giunta, A. D.; Schneebeli, M.

2017-12-01

Snow stratigraphy, the characteristic layering within a seasonal snowpack, has important implications for snow remote sensing, hydrology and avalanches. Forests modify snowpack properties through interception, wind speed reduction, and changes to the energy balance. The lack of snowpack observations in forests limits our ability to understand the evolution of snow stratigraphy and its spatio-temporal variability as a function of forest structure and to observe snowpack response to changes in forest cover. We examined the snowpack under canopies of a spruce forest in the central Rocky Mountains, USA, using the SnowMicroPen (SMP), a high resolution digital penetrometer. Weekly-repeated penetration force measurements were recorded along 10 m transects every 0.3 m in winter 2015 and bi-weekly along 20 m transects every 0.5 m in 2016 in three study plots beneath canopies of undisturbed, bark beetle-disturbed and harvested forest stands, and an open meadow. To disentangle information about layer hardness and depth variabilities, and to quantitatively compare the different SMP profiles, we applied a matching algorithm to our dataset, which combines several profiles by automatically adjusting their layer thicknesses. We linked spatial and temporal variabilities of penetration force and depth, and thus snow stratigraphy to forest and meteorological conditions. Throughout the season, snow stratigraphy was more heterogeneous in undisturbed but also beneath bark beetle-disturbed forests. In contrast, and despite remaining small diameter trees and woody debris, snow stratigraphy was rather homogenous at the harvested plot. As expected, layering at the non-forested plot varied only slightly over the small spatial extent sampled. At the open and harvested plots, persistent crusts and ice lenses were clearly present in the snowpack, while such hard layers barely occurred beneath undisturbed and disturbed canopies. Due to settling, hardness significantly increased with depth at open and harvested plots, which was less distinctive at the other two plots. Our results contribute to the general understanding of forest-snowpack interactions and, if combined with density and specific surface area estimates, can be used to validate snowpack and microwave models for avalanche formation and SWE retrieval in forests.

Boundary layer ozone - An airborne survey above the Amazon Basin

NASA Technical Reports Server (NTRS)

Gregory, Gerald L.; Browell, Edward V.; Warren, Linda S.

1988-01-01

Ozone data obtained over the forest canopy of the Amazon Basin during July and August 1985 in the course of NASA's Amazon Boundary Layer Experiment 2A are discussed, and ozone profiles obtained during flights from Belem to Tabatinga, Brazil, are analyzed to determine any cross-basin effects. The analyses of ozone data indicate that the mixed layer of the Amazon Basin, for the conditions of undisturbed meteorology and in the absence of biomass burning, is a significant sink for tropospheric ozone. As the coast is approached, marine influences are noted at about 300 km inland, and a transition from a forest-controlled mixed layer to a marine-controlled mixed layer is noted.

Leaf variations in Elaeagnus angustifolia related to environmental heterogeneity.

PubMed

Klich

2000-11-01

Elaeagnus angustifolia (Russian olive) is a Eurasian tree that has become naturalized and has invaded zones along watercourses in many arid and semiarid regions of the world. These habitats are characterized by vertical environmental gradients, thus trees must develop some plasticity to adapt to the wide range of site conditions. This study was undertaken to test the hypothesis that variations in leaf anatomy and morphology of E. angustifolia reflect their adaptability to the differences in the microclimate that occur within the canopy of single trees. Foliar architecture, blade and petiole epidermal and internal anatomy were examined in leaves at different canopy positions and related to environmental conditions. Upper sun-leaves are exposed to higher solar irradiance and lower air humidity and are smaller, more slender and thicker than the lower, half-exposed and shade-leaves. Color varies between the leaves at different levels, from silvery grey-green in the upper strata, to dark green in the lower one. Bicolor is more evident in half-exposed and shaded leaves. When compared with the lower half-exposed and shade-leaves, the upper leaves of E. angustifolia have a greater areole density, a higher mesophyll proportion and stomatal density. Trichomes are multicellular, pedestalled, stellate-branched or peltate and their form and density can be associated with leaf color and appearance. The slender petioles of the upper leaves have proportionally more epidermis, collenchyma and phloem and less parenchyma and xylem than those of lower leaves, when observed in transverse sections. Foliar morphological and anatomical variability in E. angustifolia may be considered an adaptive advantage that enables leaves to develop and function in habitats marked by strong variations of solar radiation, air temperature and humidity.

The impact of forest structure and light utilization on carbon cycling in tropical forests

NASA Astrophysics Data System (ADS)

Morton, D. C.; Longo, M.; Leitold, V.; Keller, M. M.

2015-12-01

Light competition is a fundamental organizing principle of forest ecosystems, and interactions between forest structure and light availability provide an important constraint on forest productivity. Tropical forests maintain a dense, multi-layered canopy, based in part on abundant diffuse light reaching the forest understory. Climate-driven changes in light availability, such as more direct illumination during drought conditions, therefore alter the potential productivity of forest ecosystems during such events. Here, we used multi-temporal airborne lidar data over a range of Amazon forest conditions to explore the influence of forest structure on gross primary productivity (GPP). Our analysis combined lidar-based observations of canopy illumination and turnover in the Ecosystem Demography model (ED, version 2.2). The ED model was updated to specifically account for regional differences in canopy and understory illumination using lidar-derived measures of canopy light environments. Model simulations considered the influence of forest structure on GPP over seasonal to decadal time scales, including feedbacks from differential productivity between illuminated and shaded canopy trees on mortality rates and forest composition. Finally, we constructed simple scenarios with varying diffuse and direct illumination to evaluate the potential for novel plant-climate interactions under scenarios of climate change. Collectively, the lidar observations and model simulations underscore the need to account for spatial heterogeneity in the vertical structure of tropical forests to constrain estimates of tropical forest productivity under current and future climate conditions.

[Canopy rainfall storage capacity of tropical seasonal rainforest and rubber plantation in Xishuangbanna].

PubMed

Wang, Xin; Zhang, Yiping

2006-10-01

Based on the 2003-2004 laboratory and field observation data, and with scaling-up method, this paper studied the canopy rainfall storage capacity of tropical seasonal rainforest and rubber plantation in Xishuangbanna. The results showed that the canopy rainfall storage capacity was 0.45-0.79 mm for tropical seasonal rainforest and 0.48-0.71 mm for rubber plantation, and that of the branch and bark accounted for >50 % of the total. For these two forests, the canopy rainfall storage capacity was much higher in foggy season (from November to February) and dry-hot season (from March to April) than in rainy season (from May to October), and the duration needed to reach water saturation was about 5 min for leaf, 2-3 h for bark, and 2. 5-4 h for branch. During the processes of wetting and air-drying, leaf was easier while branch and bark were somewhat difficult to hold water and then be air-dried, suggesting that leaf played an important role in intercepting rainfall in short-duration rainfall events, while branch and bark could work much better in doing this in long-duration or high-intensity rainfall events. Compared with rubber plantation, tropical seasonal rainforest had a stronger rainfall-storage capacity due to its multi-layer structure of canopy and excellent water-holding performance.

Canopy structure and atmospheric flows in relation to the δ13C of respired CO2 in a subalpine coniferous forest

USGS Publications Warehouse

Schaeffer, Sean M.; Anderson, Dean E.; Burns, Sean P.; Monson, Russell K.; Sun, Jielun; Bowling, David R.

2008-01-01

Stable isotopes provide insight into ecosystem carbon cycling, plant physiological processes, atmospheric boundary-layer dynamics, and are useful for the integration of processes over multiple scales. Of particular interest is the carbon isotope content (δ13C) of nocturnal ecosystem-respired CO2 (δR). Recent advances in technology have made it possible to continuously examine the variation in δR within a forest canopy over relatively long time-scales (months–years). We used tunable diode laser spectroscopy to examine δR at within- and below-canopy spatial locations in a Colorado subalpine forest (the Niwot Ridge AmeriFlux site). We found a systematic pattern of increased δR within the forest canopy (δR-c) compared to that near the ground (δR-g). Values of δR-c were weakly correlated with the previous day's mean maximum daytime vapor pressure deficit (VPD). Conversely, there was a negative but still weak correlation between δR-g and time-lagged (0–5 days) daily mean soil moisture. The topography and presence of sustained nightly drainage flows at the Niwot Ridge forest site suggests that, on nights with stable atmospheric conditions, there is little mixing of air near the ground with that in the canopy. Atmospheric stability was assessed using thresholds of friction velocity, stability above the canopy, and bulk Richardson number within the canopy. When we selectively calculated δR-g and δR-c by removing time periods when ground and canopy air were well mixed, we found stronger correlations between δR-c and VPD, and δR-g and soil moisture. This suggests that there may be fundamental differences in the environmental controls on δR at sub-canopy spatial scales. These results may help explain the wide variance observed in the correlation of δR with different environmental parameters in other studies.

Dynamics of Plant Flow Interactions for the Seagrass Amphibolis antarctica: Field Observations and Model Simulations

NASA Astrophysics Data System (ADS)

Verduin, J. J.; Backhaus, J. O.

2000-02-01

Seagrass canopies influence water flow partly as a consequence of their morphology. Amphibolis antarctica (Labill.) Sonder et Aschers. ex Aschers, an Australian endemic, is different morphologically from more-commonly studied blade-like seagrasses such as Zostera and Thalassia. Field measurements and model predictions were used to characterize water flow within and above an A. antarctica meadow. A series of high resolution three-dimensional velocity measurements were obtained within, above and adjacent to A. antarctica meadows at different heights above the seabed. Field observations on the effect of seagrass canopy on flow show an overall damping effect. Power spectra of the velocity data revealed a reduction in energy from 500 (cm s -1) 2s -1to 10 (cm s -1) 2s -1within the canopy. Profiles of kinetic energy were calculated from in situ velocity measurements at 5 cm increments from 10 cm to 80 cm above the seabed, within and above the seagrass canopy. There was an intensification of flow where the canopy structure was densest (approximately 40 cm above the seabed) and slightly above it. The baffling effect of the canopy was most effective 25 cm above the seabed: here the flow was reduced from 50 cm s -1at free surface to 2-5 cm s -1. A slight increase in flow within the canopy was seen 10 cm above the sediment due to reduced friction exerted by the lower leafless stems of the plants. A high resolution three-dimensional hydrodynamic model was coupled to a ten-layer canopy model for shallow coastal site dimensions. By applying different friction factors to various parts of the plant, mimicking its architecture, water flow was shown to be altered by the plant canopy according to its morphology. The derived computational results were in good agreement with the observed in situ velocity and kinetic energy changes. As a result of this study it is now possible to accurately predict plant-flow interactions determining pollen and particles distribution and dispersal.

Hydrodynamic behavior in the outer shear layer of partly obstructed open channels

NASA Astrophysics Data System (ADS)

Ben Meftah, Mouldi; De Serio, Francesca; Mossa, Michele

2014-06-01

Despite the many studies on flow in partly obstructed open channels, this issue remains of fundamental importance in order to better understand the interaction between flow behavior and the canopy structure. In the first part of this study we suggest a new theoretical approach able to model the flow pattern within the shear layer in the unobstructed domain, adjacent to the canopy area. Differently from previous studies, the new analytical solution of flow momentum equations takes into account the transversal velocity component of the flow, which is modelled as a linear function of the streamwise velocity. The proposed theoretical model is validated by different experiments carried out on a physical model of a very large rectangular channel by the research group of the Department of Civil, Environmental, Building Engineering and Chemistry of the Technical University of Bari. An array of vertical, rigid, and circular steel cylinders was partially mounted on the bottom in the central part of the flume, leaving two lateral areas of free flow circulation near the walls. The three-dimensional flow velocity components were measured using a 3D Acoustic Doppler Velocimeter. A comparison of the measured and predicted data of the present study with those obtained in other previous studies, carried out with different canopy density, show a non-dependence of this analytical solution on the array density and the Reynolds number. In the second part of the paper, detailed observations of turbulent intensities and spanwise Reynolds stresses in the unobstructed flow are analyzed and discussed. Differently from some earlier studies, it was observed that the peak of the turbulence intensity and that of the spanwise Reynolds stress are significantly shifted toward the center of the shear layer.

Increasing of Urban Radiation due to Climate Change and Reduction Strategy using Vegetation

NASA Astrophysics Data System (ADS)

Park, C.; Lee, D.; Heo, H. K.; Ahn, S.

2017-12-01

Urban Heat Island (UHI) which means urban air temperature is higher than suburban area is one of the most important environmental issues in Urban. High density of buildings and high ratio of impervious surfaces increases the radiation fluxes in urban canopy. Furthermore, climate change is expected to make UHI even more seriously in the future. Increased irradiation and air temperature cause high amount of short wave and long wave radiation, respectively. This increases net radiation negatively affects heat condition of pedestrian. UHI threatens citizen's health by increasing violence and heat related diseases. For this reason, understanding how much urban radiation will increase in the future, and exploring radiation reduction strategies is important for reducing UHI. In this research, we aim to reveal how the radiation flux in the urban canyon will change as the climate change and determine how much of urban vegetation will be needed to cover this degradation. The study area is a commercial district in Seoul where highly populated area. Due to the high density of buildings and lack of urban vegetation, this area has a poor thermal condition in summer. In this research, we simulate the radiation flux on the ground using multi-layer urban canopy model. Unlike conventionally used urban canopy model to simulate radiation transfer using vertically single layer, the multi-layer model we used here, enables to consider the vertical heterogeneous of buildings and urban vegetation. As a result, net radiation of urban ground will be increase 2.1 W/m² in the 2050s and 2.7 W/m² in the 2100s. And to prevent the increase of radiation, it is revealed that the urban vegetation should by increased by 10%. This research will be valuable in establishing greening planning as a strategy to reduce UHI effect.

Xylem vulnerability curves of canopy branches of mature trees from Caxiuana and Tapajos National Forests, Para, Brazil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Powell, Thomas; Moorcroft, Paul

Raw data for xylem vulnerability curves measured on upper canopy branches of mature trees from the Caxiuana and Tapajos National Forests, Para, Brazil. Tapajos samples were harvested from km67 transects, which is nearby the decommissioned throughfall-exclusion, drought-experiment plots. Caxiuana samples were harvested from trees growing in the throughfall-exclusion, drought-experiment plots. Data were collected in 2011 and 2012. Dataset includes: date of measurement, site ID, plot ID, tree ID (species, tree tag #), xylem pressure, percent loss of conductivity. Air injection method was used. Data reference: Powell et al. (2017) Differences in xylem cavitation resistance and leaf hydraulic traits explain differencesmore » in drought tolerance among mature Amazon rainforest trees. Global Change Biology.« less

An Investigation into the Mechanics of Windblown Dust Entrainment from Nickel Slag Surfaces Resembling Armoured Desert Pavements

NASA Astrophysics Data System (ADS)

Sanderson, Robert Steven

The purpose of this thesis is to investigate the dynamics of PM 10 emission from a nickel slag stockpile that closely resembles a desert pavement in physical characteristics. In the field, it was observed that slag surfaces develop by natural processes into a well-armoured surface over some period of time. The surface then consists of two distinct layers; a surficial armour layer containing only non-erodible gravel and cobble-sized clasts, and an underlying dust-laden layer, which contains a wide size range of slag particles, from clay-sized to cobble-sized. This surficial armour layer protects the underlying fines from wind entrainment, at least under typical wind conditions; however, particle emissions still do occur under high wind speeds. The dynamics of particle entrainment from within these surfaces are investigated herein. It is shown that the dynamics of the boundary layer flow over these lag surfaces are influenced by the inherent roughness and permeability of the surficial armour layer, such that the flow resembles those observed over and within vegetation canopies, and those associated with permeable gravel-bed river channels. Restriction of air flow within the permeable surface produces a high-pressure zone within the pore spaces, resulting in a Kelvin-Helmholtz shear instability, which triggers coherent motions in the form of repeating burst-sweep cycles. Using Laser Doppler Anemometry (LDA), it is demonstrated that the lower boundary layer is characterized by both Q4 sweeping motions and Q2 bursting motions, while the upper boundary layer is dominated by Q2 bursts. Pore air motions within the slag material were measured using buried pressure ports. It is shown that the mean pressure gradient which forms within the slag material results in net upward displacement of air, or wind pumping. However, this net upward motion is a result of rapid oscillatory motions which are directly driven by coherent boundary layer motions. It is also demonstrated that these coherent motions are able to penetrate at least 4 cm through the surficial armour layer, thereby transporting turbulent kinetic energy (TKE) downward to the dust-laden sub-surface layer. This represents a mechanism of momentum transfer that is able to reach the erodible material, while the wind pumping effect represents a mechanism for particle exhaustion.

Ceramic substrate including thin film multilayer surface conductor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wolf, Joseph Ambrose; Peterson, Kenneth A.

2017-05-09

A ceramic substrate comprises a plurality of ceramic sheets, a plurality of inner conductive layers, a plurality of vias, and an upper conductive layer. The ceramic sheets are stacked one on top of another and include a top ceramic sheet. The inner conductive layers include electrically conductive material that forms electrically conductive features on an upper surface of each ceramic sheet excluding the top ceramic sheet. The vias are formed in each of the ceramic sheets with each via being filled with electrically conductive material. The upper conductive layer includes electrically conductive material that forms electrically conductive features on anmore » upper surface of the top ceramic sheet. The upper conductive layer is constructed from a stack of four sublayers. A first sublayer is formed from titanium. A second sublayer is formed from copper. A third sublayer is formed from platinum. A fourth sublayer is formed from gold.« less

Process analysis of characteristics of the boundary layer during a heavy haze pollution episode in an inland megacity, China.

PubMed

Wang, Shan; Liao, Tingting; Wang, Lili; Sun, Yang

2016-02-01

Ground observation data from 8 meteorological stations in Xi'an, air mass concentration data from 13 environmental quality monitoring sites in Xi'an, as well as radiosonde observation and wind profile radar data, were used in this study. Thereby, the process, causes and boundary layer meteorological characteristics of a heavy haze episode occurring from 16 to 25 December 2013 in Xi'an were analyzed. Principal component analysis showed that this haze pollution was mainly caused by the high-intensity emission and formation of gaseous pollutants (NO2, CO and SO2) and atmospheric particles (PM2.5 (fine particles) and PM10 (respirable suspended particle). The second cause was the relative humidity and continuous low temperature. The third cause was the allocation of the surface pressure field. The presence of a near-surface temperature inversion at the boundary layer formed favorable stratification conditions for the formation and maintenance of heavy haze pollution. The persistent thick haze layer weakened the solar radiation. Meanwhile, a warming effect in the urban canopy layer and in the transition zone from the urban friction sublayer to the urban canopy was indicated. All these conditions facilitated the maintenance and reinforcement of temperature inversion. The stable atmospheric stratification finally acted on the wind field in the boundary layer, and further weakened the exchange capacity of vertical turbulence. The superposition of a wind field with the horizontal gentle wind induced the typical air stagnation and finally caused the deterioration of air quality during this haze event. Copyright © 2015. Published by Elsevier B.V.

Hydrological and biogeochemical variation of stemflow from live, stressed, and dead codominant deciduous canopy trees

NASA Astrophysics Data System (ADS)

Frost, E. E.; Levia, D. F.

2011-12-01

Stemflow, a critical localized point source of both water and nutrients in forested ecosystems, was examined as a function of species and mortality in a mid-Atlantic deciduous forest. Thirty trees across two species, Fagus grandifolia [American beech] and Liriodendron tulipifera [yellow poplar], and three mortality classes, live, stressed, and dead, were sampled and analyzed on an event basis for one year. Significant interspecific differences in volume and nutrient content of stemflow were found that were attributable to differences in canopy structure between the species. Funneling ratios across all three mortality classes were significantly different for F. grandifolia and between dead and live/stressed classes for L. tulipifera. Stemflow volumes from the dead trees of both species were a fraction of that from live and stressed trees. This was attributable to increased relative water storage capacities, canopy crown position, and the lack of surface area contributing to stemflow generation in upper canopy. Concentrations of nutrients in stemflow from dead trees were significantly higher than those found in both live and stressed stems for most nutrients analyzed. Enrichment ratios from dead stems were generally lower given the reduced volumes observed. Given the multi-decadal impact of standing dead trees in forest ecosystems and the uncertainty of changes in morality patterns in forests, additional research is warranted to further quantify the hydrobiochemical impact of stemflow from dying stems over their entire lifecycle.

Model Urbanization Strategy: Summaries, Recommendations and Requirements

EPA Science Inventory

The urban canopy (UC), the layer of the atmosphere between the ground and the top of the highest buildings, is the region where people live and human activities take place. Because of this importance (e.g., human health, preservation of buildings) significant efforts have been de...

Summer Roost Tree Selection by Eastern Red, Seminole, and Evening Bats in the Upper Coastal Plain of South Carolina

DOE Office of Scientific and Technical Information (OSTI.GOV)

Menzel, M.A.; Carter, T.C.; Ford, W.M.

Radiotraction of six eastern red bats, six seminole bats and twenty-four evening bats to 55, 61, and 65 day roosts during 1996 to 1997 in the Upper Coastal Plain of South Carolina. For each species, testing was done for differences between used roost trees and randomly located trees. Also tested for differences between habitat characteristics surrounding roost trees and randomly located trees. Eastern Red and Seminole bats generally roosted in canopies of hardwood and pine while clinging to foilage and small branches. Evening bats roosted in cavities or under exfoliating bark in pines and dead snags. Forest management strategies namedmore » within the study should be beneficial for providing roosts in the Upper Coastal Plain of South Carolina.« less

Modeling the Interaction of Radiation Between Vegetation and the Seasonal Snowcover

NASA Astrophysics Data System (ADS)

Tribbeck, M. J.; Gurney, R. J.; Morris, E. M.; Pearson, D.

2001-12-01

Prediction of meltwater runoff is crucial to communities where the seasonal snowpack is the major water supply. Water is itself a vital resource and it carries nutrients both in solution and in suspension. Simulation of snowpack depletion at a point in open areas has previously been shown to produce accurate results using physically based models such as SNTHERM. However, the radiation balance is more complex under a forest canopy as radiation is scattered and absorbed by canopy elements. This can alter the timing and magnitude of snowpack runoff substantially. The interaction of radiation between a forest canopy and its underlying snowcover is modeled by the coupling of a physically based snow model and an optical and thermal radiation canopy model. The snow model, which is based on SNTHERM (Jordan, 1991), is a discrete, multi-layer, one-dimensional mass and energy budget model for snow and is formulated with an adaptive grid system that compresses with the compacting snowpack and allows retention of snowpack stratigraphy. The vegetation canopy model approximates the canopy as a series of discrete, randomly orientated elements that scatter and absorb optical and thermal radiation. Multiple scattering of radiation between canopy and snow surface is modeled to conserve energy. The coupled model SNOWCAN differs from other vegetation-snow models such as GORT or SNOBAL as it models the albedo feedback mechanism. This is important as the albedo both affects and is affected by (through grain growth) the radiation balance. SNOWCAN is driven by standard atmospheric variables (including incident solar and thermal radiation) measured outside of the canopy and simulates snowpack properties such as temperature and density profiles as well as the sub-canopy radiation balance. The coupled snow and vegetation energy budget model was used to simulate snow depth at an old jack pine site during the 1994 BOREAS campaign. Measured and simulated snow depth showed good agreement throughout the accumulation and ablation periods, yielding an r2 correlation coefficient of 0.94. The snowpack development was also simulated at a point site within a fir stand in Reynolds Creek Experimental Watershed, Idaho, USA for the water year 2000-2001. A sensitivity analysis was carried out and comparisons were made with field observations of snowpack properties and sub-canopy radiation data for model validation.

Soil properties determine the elevational patterns of base cations and micronutrients in the plant-soil system up to the upper limits of trees and shrubs

NASA Astrophysics Data System (ADS)

Wang, Ruzhen; Wang, Xue; Jiang, Yong; Cerdà, Artemi; Yin, Jinfei; Liu, Heyong; Feng, Xue; Shi, Zhan; Dijkstra, Feike A.; Li, Mai-He

2018-03-01

To understand whether base cations and micronutrients in the plant-soil system change with elevation, we investigated the patterns of base cations and micronutrients in both soils and plant tissues along three elevational gradients in three climate zones in China. Base cations (Ca, Mg, and K) and micronutrients (Fe, Mn, and Zn) were determined in soils, trees, and shrubs growing at lower and middle elevations as well as at their upper limits on Balang (subtropical, SW China), Qilian (dry temperate, NW China), and Changbai (wet temperate, NE China) mountains. No consistent elevational patterns were found for base cation and micronutrient concentrations in both soils and plant tissues (leaves, roots, shoots, and stem sapwood). Soil pH, soil organic carbon (SOC), total soil nitrogen (TN), the SOC to TN ratio (C : N), and soil extractable nitrogen (NO3- and NH4+) determined the elevational patterns of soil exchangeable Ca and Mg and available Fe, Mn, and Zn. However, the controlling role of soil pH and SOC was not universal as revealed by their weak correlations with soil base cations under tree canopies at the wet temperate mountain and with micronutrients under both tree and shrub canopies at the dry temperate mountain. In most cases, soil base cation and micronutrient availabilities played fundamental roles in determining the base cation and micronutrient concentrations in plant tissues. An exception existed for the decoupling of leaf K and Fe with their availabilities in the soil. Our results highlight the importance of soil physicochemical properties (mainly SOC, C : N, and pH) rather than elevation (i.e., canopy cover and environmental factors, especially temperature), in determining base cation and micronutrient availabilities in soils and subsequently their concentrations in plant tissues.

Arthropod Distribution in a Tropical Rainforest: Tackling a Four Dimensional Puzzle.

PubMed

Basset, Yves; Cizek, Lukas; Cuénoud, Philippe; Didham, Raphael K; Novotny, Vojtech; Ødegaard, Frode; Roslin, Tomas; Tishechkin, Alexey K; Schmidl, Jürgen; Winchester, Neville N; Roubik, David W; Aberlenc, Henri-Pierre; Bail, Johannes; Barrios, Héctor; Bridle, Jonathan R; Castaño-Meneses, Gabriela; Corbara, Bruno; Curletti, Gianfranco; Duarte da Rocha, Wesley; De Bakker, Domir; Delabie, Jacques H C; Dejean, Alain; Fagan, Laura L; Floren, Andreas; Kitching, Roger L; Medianero, Enrique; Gama de Oliveira, Evandro; Orivel, Jérôme; Pollet, Marc; Rapp, Mathieu; Ribeiro, Sérvio P; Roisin, Yves; Schmidt, Jesper B; Sørensen, Line; Lewinsohn, Thomas M; Leponce, Maurice

2015-01-01

Quantifying the spatio-temporal distribution of arthropods in tropical rainforests represents a first step towards scrutinizing the global distribution of biodiversity on Earth. To date most studies have focused on narrow taxonomic groups or lack a design that allows partitioning of the components of diversity. Here, we consider an exceptionally large dataset (113,952 individuals representing 5,858 species), obtained from the San Lorenzo forest in Panama, where the phylogenetic breadth of arthropod taxa was surveyed using 14 protocols targeting the soil, litter, understory, lower and upper canopy habitats, replicated across seasons in 2003 and 2004. This dataset is used to explore the relative influence of horizontal, vertical and seasonal drivers of arthropod distribution in this forest. We considered arthropod abundance, observed and estimated species richness, additive decomposition of species richness, multiplicative partitioning of species diversity, variation in species composition, species turnover and guild structure as components of diversity. At the scale of our study (2 km of distance, 40 m in height and 400 days), the effects related to the vertical and seasonal dimensions were most important. Most adult arthropods were collected from the soil/litter or the upper canopy and species richness was highest in the canopy. We compared the distribution of arthropods and trees within our study system. Effects related to the seasonal dimension were stronger for arthropods than for trees. We conclude that: (1) models of beta diversity developed for tropical trees are unlikely to be applicable to tropical arthropods; (2) it is imperative that estimates of global biodiversity derived from mass collecting of arthropods in tropical rainforests embrace the strong vertical and seasonal partitioning observed here; and (3) given the high species turnover observed between seasons, global climate change may have severe consequences for rainforest arthropods.

Arthropod Distribution in a Tropical Rainforest: Tackling a Four Dimensional Puzzle

PubMed Central

Basset, Yves; Cizek, Lukas; Cuénoud, Philippe; Didham, Raphael K.; Novotny, Vojtech; Ødegaard, Frode; Roslin, Tomas; Tishechkin, Alexey K.; Schmidl, Jürgen; Winchester, Neville N.; Roubik, David W.; Aberlenc, Henri-Pierre; Bail, Johannes; Barrios, Héctor; Bridle, Jonathan R.; Castaño-Meneses, Gabriela; Corbara, Bruno; Curletti, Gianfranco; Duarte da Rocha, Wesley; De Bakker, Domir; Delabie, Jacques H. C.; Dejean, Alain; Fagan, Laura L.; Floren, Andreas; Kitching, Roger L.; Medianero, Enrique; Gama de Oliveira, Evandro; Orivel, Jérôme; Pollet, Marc; Rapp, Mathieu; Ribeiro, Sérvio P.; Roisin, Yves; Schmidt, Jesper B.; Sørensen, Line; Lewinsohn, Thomas M.; Leponce, Maurice

2015-01-01

Quantifying the spatio-temporal distribution of arthropods in tropical rainforests represents a first step towards scrutinizing the global distribution of biodiversity on Earth. To date most studies have focused on narrow taxonomic groups or lack a design that allows partitioning of the components of diversity. Here, we consider an exceptionally large dataset (113,952 individuals representing 5,858 species), obtained from the San Lorenzo forest in Panama, where the phylogenetic breadth of arthropod taxa was surveyed using 14 protocols targeting the soil, litter, understory, lower and upper canopy habitats, replicated across seasons in 2003 and 2004. This dataset is used to explore the relative influence of horizontal, vertical and seasonal drivers of arthropod distribution in this forest. We considered arthropod abundance, observed and estimated species richness, additive decomposition of species richness, multiplicative partitioning of species diversity, variation in species composition, species turnover and guild structure as components of diversity. At the scale of our study (2km of distance, 40m in height and 400 days), the effects related to the vertical and seasonal dimensions were most important. Most adult arthropods were collected from the soil/litter or the upper canopy and species richness was highest in the canopy. We compared the distribution of arthropods and trees within our study system. Effects related to the seasonal dimension were stronger for arthropods than for trees. We conclude that: (1) models of beta diversity developed for tropical trees are unlikely to be applicable to tropical arthropods; (2) it is imperative that estimates of global biodiversity derived from mass collecting of arthropods in tropical rainforests embrace the strong vertical and seasonal partitioning observed here; and (3) given the high species turnover observed between seasons, global climate change may have severe consequences for rainforest arthropods. PMID:26633187

Historical harvests reduce neighboring old-growth basal area across a forest landscape.

PubMed

Bell, David M; Spies, Thomas A; Pabst, Robert

2017-07-01

While advances in remote sensing have made stand, landscape, and regional assessments of the direct impacts of disturbance on forests quite common, the edge influence of timber harvesting on the structure of neighboring unharvested forests has not been examined extensively. In this study, we examine the impact of historical timber harvests on basal area patterns of neighboring old-growth forests to assess the magnitude and scale of harvest edge influence in a forest landscape of western Oregon, USA. We used lidar data and forest plot measurements to construct 30-m resolution live tree basal area maps in lower and middle elevation mature and old-growth forests. We assessed how edge influence on total, upper canopy, and lower canopy basal area varied across this forest landscape as a function of harvest characteristics (i.e., harvest size and age) and topographic conditions in the unharvested area. Upper canopy, lower canopy, and total basal area increased with distance from harvest edge and elevation. Forests within 75 m of harvest edges (20% of unharvested forests) had 4% to 6% less live tree basal area compared with forest interiors. An interaction between distance from harvest edge and elevation indicated that elevation altered edge influence in this landscape. We observed a positive edge influence at low elevations (<800 m) and a negative edge influence at moderate to high elevations (>800 m). Surprisingly, we found no or weak effects of harvest age (13-60 yr) and harvest area (0.2-110 ha) on surrounding unharvested forest basal area, implying that edge influence was relatively insensitive to the scale of disturbance and multi-decadal recovery processes. Our study indicates that the edge influence of past clearcutting on the structure of neighboring uncut old-growth forests is widespread and persistent. These indirect and diffuse legacies of historical timber harvests complicate forest management decision-making in old-growth forest landscapes by broadening the traditional view of stand boundaries. Furthermore, the consequences of forest harvesting may reach across ownership boundaries, highlighting complex governance issues surrounding landscape management of old-growth forests. © 2017 by the Ecological Society of America.

Flood Control Root River Basin, Minnesota.

DTIC Science & Technology

1977-03-01

occurs in drier sites principally due to the dense canopy of mature trees. Woody shrubs and some degree of tree reproduction occur more commonly among...plant species tolerant to alternate inundation and flood- water recession thrive while less tolerant species are absent. Woody species of vines ...animals of the Upper Mississippi River basin i) Comnon nwne Scientific name Status Present distribution Indiana bat Endangered, estimated Midwest and

Fish introductions and light modulate food web fluxes in tropical streams: a whole-ecosystem experimental approach.

PubMed

Collins, Sarah M; Thomas, Steven A; Heatherly, Thomas; MacNeill, Keeley L; Leduc, Antoine O H C; López-Sepulcre, Andrés; Lamphere, Bradley A; El-Sabaawi, Rana W; Reznick, David N; Pringle, Catherine M; Flecker, Alexander S

2016-11-01

Decades of ecological study have demonstrated the importance of top-down and bottom-up controls on food webs, yet few studies within this context have quantified the magnitude of energy and material fluxes at the whole-ecosystem scale. We examined top-down and bottom-up effects on food web fluxes using a field experiment that manipulated the presence of a consumer, the Trinidadian guppy Poecilia reticulata, and the production of basal resources by thinning the riparian forest canopy to increase incident light. To gauge the effects of these reach-scale manipulations on food web fluxes, we used a nitrogen ( 15 N) stable isotope tracer to compare basal resource treatments (thinned canopy vs. control) and consumer treatments (guppy introduction vs. control). The thinned canopy stream had higher primary production than the natural canopy control, leading to increased N fluxes to invertebrates that feed on benthic biofilms (grazers), fine benthic organic matter (collector-gatherers), and organic particles suspended in the water column (filter feeders). Stream reaches with guppies also had higher primary productivity and higher N fluxes to grazers and filter feeders. In contrast, N fluxes to collector-gatherers were reduced in guppy introduction reaches relative to upstream controls. N fluxes to leaf-shredding invertebrates, predatory invertebrates, and the other fish species present (Hart's killifish, Anablepsoides hartii) did not differ across light or guppy treatments, suggesting that effects on detritus-based linkages and upper trophic levels were not as strong. Effect sizes of guppy and canopy treatments on N flux rates were similar for most taxa, though guppy effects were the strongest for filter feeding invertebrates while canopy effects were the strongest for collector-gatherer invertebrates. Combined, these results extend previous knowledge about top-down and bottom-up controls on ecosystems by providing experimental, reach-scale evidence that both pathways can act simultaneously and have equally strong influence on nutrient fluxes from inorganic pools through primary consumers. © 2016 by the Ecological Society of America.

Water stress index for alkaline fen habitat based on UAV and continuous tower measurements of canopy infrared temperature

NASA Astrophysics Data System (ADS)

Ciężkowski, Wojciech; Jóźwiak, Jacek; Chormański, Jarosław; Szporak-Wasilewska, Sylwia; Kleniewska, Małgorzata

2017-04-01

This study is focused on developing water stress index for alkaline fen, to evaluate water stress impact on habitat protected within Natura 2000 network: alkaline fens (habitat code:7230). It is calculated based on continuous measurements of air temperature, relative humidity and canopy temperature from meteorological tower and several UAV flights for canopy temperature registration. Measurements were taken during the growing season in 2016 in the Upper Biebrza Basin in north-east Poland. Firstly methodology of the crop water stress index (CWSI) determination was used to obtained non-water stress base line based on continuous measurements (NWSBtower). Parameters of NWSBtower were directly used to calculate spatial variability of CWSI for UAV thermal infrared (TIR) images. Then for each UAV flight day at least 3 acquisition were performed to define NWSBUAV. NWSBUAV was used to calculate canopy waters stress for whole image relative to the less stressed areas. The spatial distribution of developed index was verified using remotely sensed indices of vegetation health. Results showed that in analysed area covered by sedge-moss vegetation NWSB cannot be used directly. The proposed modification of CWSI allows identifying water stress in alkaline fen habitats and was called as Sedge-Moss Water Stress Index (SMWSI). The study shows possibility of usage remotely sensed canopy temperature data to detect areas exposed to the water stress on wetlands. This research has been carried out under the Biostrateg Programme of the Polish National Centre for Research and Development (NCBiR), project No.: DZP/BIOSTRATEG-II/390/2015: The innovative approach supporting monitoring of non-forest Natura 2000 habitats, using remote sensing methods (HabitARS).

Arctic Ocean Model Intercomparison Using Sound Speed

NASA Astrophysics Data System (ADS)

Dukhovskoy, D. S.; Johnson, M. A.

2002-05-01

The monthly and annual means from three Arctic ocean - sea ice climate model simulations are compared for the period 1979-1997. Sound speed is used to integrate model outputs of temperature and salinity along a section between Barrow and Franz Josef Land. A statistical approach is used to test for differences among the three models for two basic data subsets. We integrated and then analyzed an upper layer between 2 m - 50 m, and also a deep layer from 500 m to the bottom. The deep layer is characterized by low time-variability. No high-frequency signals appear in the deep layer having been filtered out in the upper layer. There is no seasonal signal in the deep layer and the monthly means insignificantly oscillate about the long-period mean. For the deep ocean the long-period mean can be considered quasi-constant, at least within the 19 year period of our analysis. Thus we assumed that the deep ocean would be the best choice for comparing the means of the model outputs. The upper (mixed) layer was chosen to contrast the deep layer dynamics. There are distinct seasonal and interannual signals in the sound speed time series in this layer. The mixed layer is a major link in the ocean - air interaction mechanism. Thus, different mean states of the upper layer in the models might cause different responses in other components of the Arctic climate system. The upper layer also strongly reflects any differences in atmosphere forcing. To compare data from the three models we have used a one-way t-test for the population mean, the Wilcoxon one-sample signed-rank test (when the requirement of normality of tested data is violated), and one-way ANOVA method and F-test to verify our hypothesis that the model outputs have the same mean sound speed. The different statistical approaches have shown that all models have different mean characteristics of the deep and upper layers of the Arctic Ocean.

Influence of mid-crustal rheology on the deformation behavior of continental crust in the continental subduction zone

NASA Astrophysics Data System (ADS)

Li, Fucheng; Sun, Zhen; Zhang, Jiangyang

2018-06-01

Although the presence of low-viscosity middle crustal layer in the continental crust has been detected by both geophysical and geochemical studies, its influence on the deformation behavior of continental crust during subduction remains poorly investigated. To illustrate the crustal deformation associated with layered crust during continental subduction, we conducted a suite of 2-D thermo-mechanical numerical studies with visco-brittle/plastic rheology based on finite-differences and marker-in-cell techniques. In the experiments, we established a three-layer crustal model with a quartz-rich middle crustal layer embedded between the upper and lower continental crust. Results show that the middle crustal layer determines the amount of the accreted upper crust, maximum subduction depth, and exhumation path of the subducted upper crust. By varying the initial effective viscosity and thickness of the middle crustal layer, the further effects can be summarized as: (1) a rheologically weaker and/or thicker middle crustal layer results in a larger percentage of the upper crust detaching from the underlying slab and accreting at the trench zone, thereby leading to more serious crustal deformation. The rest of the upper crust only subducts into the depths of high pressure (HP) conditions, causing the absence of ultra-high pressure (UHP) metamorphic rocks; (2) a rheologically stronger and/or thinner middle crustal layer favors the stable subduction of the continental crust, dragging the upper crust to a maximum depth of ∼100 km and forming UHP rocks; (3) the middle crustal layer flows in a ductile way and acts as an exhumation channel for the HP-UHP rocks in both situations. In addition, the higher convergence velocity decreases the amount of subducted upper crust. A detailed comparison of our modeling results with the Himalayan collisional belt are conducted. Our work suggests that the presence of low-viscosity middle crustal layer may be another possible mechanism for absence of UHP rocks in the southern Tibet.

Making direct use of canopy profiles in vegetation - atmosphere coupling

NASA Astrophysics Data System (ADS)

Ryder, James; Polcher, Jan; Peylin, Philippe; Ottlé, Catherine; Chen, Yiying; van Gorsel, Eva; Haverd, Vanessa; McGrath, Matthew; Naudts, Kim; Otto, Juliane; Valade, Aude; Luyssaert, Sebastiaan

2015-04-01

Most coupled land-surface regional models use the 'big-leaf' approach for simulating the sensible and latent heat fluxes of different vegetation types. However, there has been a progression in the types of questions being asked of these models, such as the consequences of land-use change or the behaviour of BVOCs and aerosol. In addition, recent years has seen growth in the availability of in-canopy datasets across a broaded range of species, with which to calibrate these simulations. Hence, there is now an argument for transferring some of the techniques and processes previously used in local, site-based land surface models to the land surface components of models which operate on a regional or even global scale. We describe here the development and evaluation of a vertical canopy energy budget model (Ryder, J et al., 2014) that can be coupled to an atmospheric model such as LMDz. Significantly, the model preserves the implicit coupling of the land-surface to atmosphere interface, which means that run-time efficiences are preserved. This is acheived by means of an interface based on the approach of Polcher et al. (1998) and Best et al. (2004), but newly developed for a canopy column. The model makes use of techniques from site-based models, such as the calculation of vertical turbulence statistics using a second-order closure model (Massman & Weil, 1999), and the distribution of long-wave and short-wave radiation over the profile, the latter using an innovate multilayer albedo scheme (McGrath et al., in prep.). Complete profiles of atmospheric temperature and specific humidity are now calculated, in order to simulate sensible and latent heat fluxes, as well as the leaf temperature at each level in the model. The model is shown to perform stably, and reproduces well flux measurements at an initial test site, across a time period of several days, or over the course of a year. Further applications of the model might be to simulate mixed canopies, the light-stimulated emission of chemical species, or the ecological consequences of changes to temperature profile as a results of changes to stand structure. References: Best, M. J., Beljaars, A. C. M., Polcher, J., & Viterbo, P. (2004). A proposed structure for coupling tiled surfaces with the planetary boundary layer. Journal of Hydrometeorology, 5, 1271-1278. Massman, W. J., & Weil, J. C., 1999. 'An analytical one-dimensional second-order closure model of turbulence statistics and the lagrangian time scale within and above plant canopies of arbitrary structure', Boundary-Layer Meteorology, 91, 81-107. Mcgrath, M. J., Pinty, B., Ryder, J., Otto, J., & Luyssaert, S., in prep. A multilevel canopy radiative transfer scheme based on a domain-averaged structure factor Polcher, J., McAvaney, B., Viterbo, P., Gaertner, M., Hahmann, A., Mahfouf, J.-F., Noilhan, J., Phillips, T.J., Pitman, A. J., Schlosser, C. A., Schulz, J-P, Timbal, B., Verseghy, D. L., Xue, Y. (1998). A proposal for a general interface between land surface schemes and general circulation models. Global and Planetary Change, 19, 261-276. Ryder, J., J. Polcher, P. Peylin, C. Ottlé, Y. Chen, E. Van Gorsel, V. Haverd, M. J. McGrath, K.Naudts, J. Otto, A. Valade, and S. Luyssaert, 2014. 'A multi-layer land surface energy budget model for implicit coupling with global atmospheric simulations', Geosci. Model Dev. Discuss. 7, 8649-8701

Photovoltaic module and laminate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bunea, Gabriela E.; Kim, Sung Dug; Kavulak, David F.J.

A photovoltaic module is disclosed. The photovoltaic module has a first side directed toward the sun during normal operation and a second, lower side. The photovoltaic module comprises a perimeter frame and a photovoltaic laminate at least partially enclosed by and supported by the perimeter frame. The photovoltaic laminate comprises a transparent cover layer positioned toward the first side of the photovoltaic module, an upper encapsulant layer beneath and adhering to the cover layer, a plurality of photovoltaic solar cells beneath the upper encapsulant layer, the photovoltaic solar cells electrically interconnected, a lower encapsulant layer beneath the plurality of photovoltaicmore » solar cells, the upper and lower encapsulant layers enclosing the plurality of photovoltaic solar cells, and a homogenous rear environmental protection layer, the rear environmental protection layer adhering to the lower encapsulant layer, the rear environmental protection layer exposed to the ambient environment on the second side of the photovoltaic module.« less

Remote sensing of Earth terrain

NASA Technical Reports Server (NTRS)

Kong, Jin AU; Yueh, Herng-Aung

1990-01-01

The layered random medium model is used to investigate the fully polarimetric scattering of electromagnetic waves from vegetation. The vegetation canopy is modeled as an anisotropic random medium containing nonspherical scatterers with preferred alignment. The underlying medium is considered as a homogeneous half space. The scattering effect of the vegetation canopy are characterized by 3-D correlation functions with variances and correlation lengths respectively corresponding to the fluctuation strengths and the physical geometries of the scatterers. The strong fluctuation theory is used to calculate the anisotropic effective permittivity tensor of the random medium and the distorted Born approximation is then applied to obtain the covariance matrix which describes the fully polarimetric scattering properties of the vegetation field. This model accounts for all the interaction processes between the boundaries and the scatterers and includes all the coherent effects due to wave propagation in different directions such as the constructive and destructive interferences. For a vegetation canopy with low attenuation, the boundary between the vegetation and the underlying medium can give rise to significant coherent effects.

Performance enhancement in Sb doped Cu(InGa)Se2 thin film solar cell by e-beam evaporation

NASA Astrophysics Data System (ADS)

Chen, Jieyi; Shen, Honglie; Zhai, Zihao; Li, Yufang; Yi, Yunge

2018-03-01

To investigate the effects of Sb doping on the structural and electrical properties of Cu(InGa)Se2 (CIGS) thin films and solar cells, CIGS thin films, prepared by e-beam evaporation on soda-lime glass, were doped with lower and upper Sb layers in the precursor stacks respectively. Change of structure and introduction of stress were observed in the CIGS thin films with upper Sb layer in stack through XRD and Raman measurement. Both crystalline quality and compactness of CIGS thin films were improved by the doping of upper Sb layer in stack and the CIGS thin film showed an optimal structural property with 20 nm Sb layer. Movement of Fermi level of the surface of CIGS thin film after doping of upper Sb layer in stack and electrons transfer between Cu/Cu+ redox couple and CIGS thin films, which provided probability for the substitution of Sb for Cu sites at the surface of CIGS thin films, were proposed to explain the migration of Cu from the surface to the bulk of CIGS thin films. The larger barrier at the CIGS/CdS interface after doping of upper Sb layer in stack made contribution to the increase of VOC of CIGS solar cells. The efficiency of CIGS solar cell was improved from 3.3% to 7.2% after doping with 20 nm upper Sb. Compared to the CIGS solar cell with lower Sb layer in stack, in which an additional Cu2-xSe phase was found, the CIGS solar cell with upper Sb layer in stack possessed a higher efficiency.

Modeling the influence of leaf demography on remotely sensed data using DART and PROSPECT-D

NASA Astrophysics Data System (ADS)

Feret, J. B.; Grau, E.; Barbier, N.; Berveiller, D.; Chave, J.; Durrieu, S.; Gastellu-Etchegorry, J. P.; Hmimina, G.; Lefèvre-Fonollosa, M. J.; Proisy, C.; Soudani, K.; Vincent, G.

2016-12-01

The seasonality of Amazon forest productivity and photosynthetic activity has recently been investigated under a new perspective by a series of publications. The debate about possible factors explaining this seasonality is vivid, and the possibility of several hypotheses has been tested, including canopy phenology and leaf demography, and changes in illumination geometry combined with the complex 3D structure of the canopy. A manifold of measurements and techniques have been used to test these hypotheses, including field observations of leaf demography from ground measured litterfall and phenocam, airborne and satellite remote sensing and 3 dimensional radiative transfer modeling. Our study explores the relative influence of leaf demography and illumination geometry on remotely sensed data. To achieve this, we take advantage of the latest advances in the domain of physical modeling at both leaf and canopy scale. The leaf optical properties model PROSPECT-D was used to model leaf optical properties at various growth stages based on field observations and theoretical leaf biochemical composition during its development and senescence. The 3-dimensional radiative transfer model DART was used to simulate various levels of complexity of canopy covers, from a turbid layer to complex canopy derived from airborne LiDAR acquisitions. Data for leaf demography and ontogeny taken from recent publications was used and integrated into canopy simulations corresponding to year-long observations. Data acquisitions were performed in the frame of the HyperTropik project, funded by CNES, Our results focus on analyzing the influence of separated and combined factors such as illumination geometry, leaf biochemistry and leaf demography on various spectral attributes, including Enhanced vegetation index and hyperspectral metrics.

Identification of the Centrifuged Lipoaspirate Fractions Suitable for Postgrafting Survival.

PubMed

Qiu, Lihong; Su, Yingjun; Zhang, Dongliang; Song, Yajuan; Liu, Bei; Yu, Zhou; Guo, Shuzhong; Yi, Chenggang

2016-01-01

The Coleman centrifugation procedure generates fractions with different adipocyte and progenitor cell densities. This study aimed to identify all fractions that are feasible for implantation. Human lipoaspirates were processed by Coleman centrifugation. The centrifugates were divided arbitrarily into upper, middle, and lower layers. Adipocyte viability, morphology, numbers of stromal vascular fraction cells, and adipose-derived mesenchymal stem cells of each layer were determined. The 12-week volume retention of subcutaneously implanted 0.3-ml lipoasperate of each layer was investigated in an athymic mice model. Most damaged adipocytes were located in the upper layers, whereas the intact adipocytes were distributed in the middle and lower layers. A gradient of stromal vascular fraction cell density was formed in the centrifugates. The implant volume retentions of samples from the upper, middle, and lower layers were 33.44 ± 5.9, 55.11 ± 4.4, and 71.2 ± 5.8 percent, respectively. Furthermore, the middle and lower layers contained significantly more adipose-derived stem cells than did the upper layer. The lower layer contains more viable adipocytes and stromal vascular fraction cells leading to the highest implant volume retention, whereas the most impaired cells are distributed in the upper layer, leading to the least volume retention. Although with a lower stromal vascular fraction content, the middle layer has a substantial number of intact adipocytes that are capable of retaining partial adipose tissue volume after implantation, suggesting that the middle layer may be an alternative fat source when large volumes of fat grafts are needed for transplantation.

The impact of in-canopy wind profile formulations on heat flux estimation using the remote sensing-based two-source model for an open orchard canopy in southern Italy

NASA Astrophysics Data System (ADS)

Cammalleri, C.; Anderson, M. C.; Ciraolo, G.; D'Urso, G.; Kustas, W. P.; La Loggia, G.; Minacapilli, M.

2010-07-01

For open orchard and vineyard canopies containing significant fractions of exposed soil (>50%), typical of Mediterranean agricultural regions, the energy balance of the vegetation elements is strongly influenced by heat exchange with the bare soil/substrate. For these agricultural systems a "two-source" approach, where radiation and turbulent exchange between the soil and canopy elements are explicitly modelled, appears to be the only suitable methodology for reliably assessing energy fluxes. In strongly clumped canopies, the effective wind speed profile inside and below the canopy layer can highly influence the partitioning of energy fluxes between the soil and vegetation components. To assess the impact of in-canopy wind profile on model flux estimates, an analysis of three different formulations is presented, including algorithms from Goudriaan (1977), Massman (1987) and Lalic et al. (2003). The in-canopy wind profile formulations are applied to the thermal-based Two-Source Energy Balance (TSEB) model developed by Norman et al. (1995) and modified by Kustas and Norman (1999). High resolution airborne remote sensing images, collected over an agricultural area located in the western part of Sicily (Italy) comprised primarily of vineyards, olive and citrus orchards, are used to derive all the input parameters need to apply the TSEB. The images were acquired from June to October 2008 and include a relatively wide range of meteorological and soil moisture conditions. A preliminary sensitivity analysis of the three wind profile algorithms highlight the dependence of wind speed just above the soil/substrate to leaf area index and canopy height over the typical canopy properties range of these agricultural area. It is found that differences in wind just above surface among the models is most significant under sparse and medium fractional cover conditions (20-60%). The TSEB model heat flux estimates are compared with micrometeorological measurements from a small aperture scintillometer and an eddy covariance tower collected over an olive orchard characterized by moderate fractional vegetation cover (≈35%) and relatively tall crop height (≈3.5 m). TSEB fluxes for the 7 image acquisition dates generated using both the Massman and Goudriaan in-canopy wind profile formulations give close agreement with measured fluxes, while the Lalic et al. equations yield poor results. The Massman wind profile scheme slightly outperforms that of Goudriaan, but it requires an additional parameter describing the roughness of the underlying vegetative surface. This parameter is not directly obtainable using remote sensing, hence this study suggests that the Goudriaan formulation for landscape applications is most suitable when detailed site-specific information regarding canopy architecture is unavailable.

Assessing the performance of aerial image point cloud and spectral metrics in predicting boreal forest canopy cover

NASA Astrophysics Data System (ADS)

Melin, M.; Korhonen, L.; Kukkonen, M.; Packalen, P.

2017-07-01

Canopy cover (CC) is a variable used to describe the status of forests and forested habitats, but also the variable used primarily to define what counts as a forest. The estimation of CC has relied heavily on remote sensing with past studies focusing on satellite imagery as well as Airborne Laser Scanning (ALS) using light detection and ranging (lidar). Of these, ALS has been proven highly accurate, because the fraction of pulses penetrating the canopy represents a direct measurement of canopy gap percentage. However, the methods of photogrammetry can be applied to produce point clouds fairly similar to airborne lidar data from aerial images. Currently there is little information about how well such point clouds measure canopy density and gaps. The aim of this study was to assess the suitability of aerial image point clouds for CC estimation and compare the results with those obtained using spectral data from aerial images and Landsat 5. First, we modeled CC for n = 1149 lidar plots using field-measured CCs and lidar data. Next, this data was split into five subsets in north-south direction (y-coordinate). Finally, four CC models (AerialSpectral, AerialPointcloud, AerialCombi (spectral + pointcloud) and Landsat) were created and they were used to predict new CC values to the lidar plots, subset by subset, using five-fold cross validation. The Landsat and AerialSpectral models performed with RMSEs of 13.8% and 12.4%, respectively. AerialPointcloud model reached an RMSE of 10.3%, which was further improved by the inclusion of spectral data; RMSE of the AerialCombi model was 9.3%. We noticed that the aerial image point clouds managed to describe only the outermost layer of the canopy and missed the details in lower canopy, which was resulted in weak characterization of the total CC variation, especially in the tails of the data.

How good is the turbid medium-based approach for accounting for light partitioning in contrasted grass--legume intercropping systems?

PubMed

Barillot, Romain; Louarn, Gaëtan; Escobar-Gutiérrez, Abraham J; Huynh, Pierre; Combes, Didier

2011-10-01

Most studies dealing with light partitioning in intercropping systems have used statistical models based on the turbid medium approach, thus assuming homogeneous canopies. However, these models could not be directly validated although spatial heterogeneities could arise in such canopies. The aim of the present study was to assess the ability of the turbid medium approach to accurately estimate light partitioning within grass-legume mixed canopies. Three contrasted mixtures of wheat-pea, tall fescue-alfalfa and tall fescue-clover were sown according to various patterns and densities. Three-dimensional plant mock-ups were derived from magnetic digitizations carried out at different stages of development. The benchmarks for light interception efficiency (LIE) estimates were provided by the combination of a light projective model and plant mock-ups, which also provided the inputs of a turbid medium model (SIRASCA), i.e. leaf area index and inclination. SIRASCA was set to gradually account for vertical heterogeneity of the foliage, i.e. the canopy was described as one, two or ten horizontal layers of leaves. Mixtures exhibited various and heterogeneous profiles of foliar distribution, leaf inclination and component species height. Nevertheless, most of the LIE was satisfactorily predicted by SIRASCA. Biased estimations were, however, observed for (1) grass species and (2) tall fescue-alfalfa mixtures grown at high density. Most of the discrepancies were due to vertical heterogeneities and were corrected by increasing the vertical description of canopies although, in practice, this would require time-consuming measurements. The turbid medium analogy could be successfully used in a wide range of canopies. However, a more detailed description of the canopy is required for mixtures exhibiting vertical stratifications and inter-/intra-species foliage overlapping. Architectural models remain a relevant tool for studying light partitioning in intercropping systems that exhibit strong vertical heterogeneities. Moreover, these models offer the possibility to integrate the effects of microclimate variations on plant growth.

A modified micrometeorological gradient method for estimating O3 dry depositions over a forest canopy

NASA Astrophysics Data System (ADS)

Wu, Z. Y.; Zhang, L.; Wang, X. M.; Munger, J. W.

2015-07-01

Small pollutant concentration gradients between levels above a plant canopy result in large uncertainties in estimated air-surface exchange fluxes when using existing micrometeorological gradient methods, including the aerodynamic gradient method (AGM) and the modified Bowen ratio method (MBR). A modified micrometeorological gradient method (MGM) is proposed in this study for estimating O3 dry deposition fluxes over a forest canopy using concentration gradients between a level above and a level below the canopy top, taking advantage of relatively large gradients between these levels due to significant pollutant uptake in the top layers of the canopy. The new method is compared with the AGM and MBR methods and is also evaluated using eddy-covariance (EC) flux measurements collected at the Harvard Forest Environmental Measurement Site, Massachusetts, during 1993-2000. All three gradient methods (AGM, MBR, and MGM) produced similar diurnal cycles of O3 dry deposition velocity (Vd(O3)) to the EC measurements, with the MGM method being the closest in magnitude to the EC measurements. The multi-year average Vd(O3) differed significantly between these methods, with the AGM, MBR, and MGM method being 2.28, 1.45, and 1.18 times that of the EC, respectively. Sensitivity experiments identified several input parameters for the MGM method as first-order parameters that affect the estimated Vd(O3). A 10% uncertainty in the wind speed attenuation coefficient or canopy displacement height can cause about 10% uncertainty in the estimated Vd(O3). An unrealistic leaf area density vertical profile can cause an uncertainty of a factor of 2.0 in the estimated Vd(O3). Other input parameters or formulas for stability functions only caused an uncertainly of a few percent. The new method provides an alternative approach to monitoring/estimating long-term deposition fluxes of similar pollutants over tall canopies.

Effect of canopy architectural variation on transpiration and thermoregulation

NASA Astrophysics Data System (ADS)

Linn, R.; Banerjee, T.

2017-12-01

One of the major scientific questions identified by the NGEE - Tropics campaign is the effect of disturbances such as forest fires, vegetation thinning and land use change on carbon, water and energy fluxes. Answers to such questions can help develop effective forest management strategies and shape policies to mitigate damages under natural and anthropogenic climate change. The absence of horizontal and vertical variation of forest canopy structure in current models is a major source of uncertainty in answering these questions. The current work addresses this issue through a bottom up process based modeling approach to systematically investigate the effect of forest canopy architectural variation on plant physiological response as well as canopy level fluxes. A plant biophysics formulation is used which is based on the following principles: (1) a model for the biochemical demand for CO2 as prescribed by photosynthesis models. This model can differentiate between photosynthesis under light-limited and nutrient-limited scenarios. (2) A Fickian mass transfer model including transfer through the laminar boundary layer on leaves that may be subjected to forced or free convection depending upon the mean velocity and the radiation load; (3) an optimal leaf water use strategy that maximizes net carbon gain for a given transpiration rate to describe the stomatal aperture variation; (4) a leaf-level energy balance to accommodate evaporative cooling. Such leaf level processes are coupled to solutions of atmospheric flow through vegetation canopies. In the first test case, different scenarios of top heavy and bottom heavy (vertical) foliage distributions are investigated within a one-dimensional framework where no horizontal heterogeneity of canopy structure is considered. In another test case, different spatial distributions (both horizontal and vertical) of canopy geometry (land use) are considered, where flow solutions using large eddy simulations (LES) are coupled to the aforementioned leaf level physiological model. The systematic differences observed across these simulated scenarios provide a clear insight of disturbance effects of forest-atmosphere interaction.

Micrometeorological measurements and vapour pressure deficit relations under in-field rainwater harvesting

NASA Astrophysics Data System (ADS)

Tesfuhuney, Weldemichael A.; Walker, Sue; Van Rensburg, Leon D.; Steyn, A. Stephan

2016-08-01

In a cropped field, microclimate and thermal stability conditions depend on the canopy structures and the prevailing weather. The main aim of the study therefore was to characterize the vertical profiles of weather variables within and above a maize (Zea mays L.) canopy and to describe the water vapour pressure deficit (VPD) under different atmospheric and soil surface conditions for both wide and narrow runoff strips with the in-field rainwater harvesting (IRWH) system. Micrometeorological measurements of wind, temperature and relative humidity were performed at eight levels, within canopy (1.8 and 2.1 m), and just above the canopy (2.4, 2.7, 3.0, and 3.3 m) up to reference levels (3.9 and 4.5 m) when the maize reached a maximum height of 2.2 m. Under incomplete canopy cover of the IRWH system, two important factors complicated evapotranspiration estimation, namely the local advection and high temperatures of the bare soil between adjacent plant rows. Diurnal variations of water vapour related to turbulence at each locality and its position in the thermal internal boundary layers. Generally, advection was more pronounced in wide runoff strips than narrow strips. On wide runoff strips the wind was more effective in replacing the air between the rows and maintained a higher driving force for evaporation. The maximum VPD over the narrow strips was observed at reference level during a dry day, at about 2.2 kPa in the afternoon, while wet day VPD reached a maximum of 1.8 kPa. The VPD of the wide runoff strips correlated negatively with wind speed, but showed a fairly positive correlation with some scattered values on wet days after rain. Therefore, profile characteristics within and above plant canopies played a key role in determining the VPD and consequently, could help to explain transpiration rates of crops. Hence, VPD relations enhanced the understanding of the heat energy exchange processes under the heterogeneous nature of maize canopy of the IRWH tillage system.

Leaf-level to Canopy Exchange of NOx and Ozone in a Forest at the University of Michigan Biological Station

NASA Astrophysics Data System (ADS)

Wang, W.; Ganzeveld, L.; Helmig, D.; Hueber, J.; Rossabi, S.; Vogel, C. S.

2017-12-01

During the month-long PROPHET-AMOS campaign in July, 2016 we investigated NOx and ozone dynamics at the University of Michigan AmeriFlux Tower (US-UMB tower) and the PROPHET Tower research sites at the University of Michigan Biological Station (UMBS), using a multi-pronged experimental approach. The two sites are within 100 m of each other, located in a mixed forest on the northern lower peninsula of Michigan, USA. In a previous study, it was found that invoking a leaf-level compensation point for NOx uptake and emission provided better agreement between observed and model-simulated in- and above-canopy NOx concentrations in this forest. To further examine the role of foliar exchange relative to other in-canopy sources and sinks of NOx, we conducted detailed vertical gradient measurements of NOx and ozone at ten heights from the forest floor to above the canopy, along with micrometeorological conditions at the AmeriFlux Tower. In parallel, to investigate the leaf-level exchanges of NOx and ozone, we carried out branch enclosure experiments near the PROPHET tower on the dominant tree species of this forest. We combine these observations with micrometeorological data from the AmeriFlux Tower to constrain simulations with the Multi-Layer Canopy Chemical Exchange Model (MLC-CHEM) for investigation of sources, sinks, and dynamics that determine NOx concentrations, vertical gradients, and fluxes in this forest. We will compare our results with previous studies and other observations during the PHOPHET-AMOS campaign.

Field testing of thermal canopy models in a spruce-fir forest

NASA Technical Reports Server (NTRS)

1990-01-01

Recent advances in remote sensing technology allow the use of the thermal infrared region to gain information about vegetative surfaces. Extending existing models to account for thermal radiance transfers within rough forest canopies is of paramount importance. This is so since all processes of interest in the physical climate system and biogeochemical cycles are thermally mediated. Model validation experiments were conducted at a well established boreal forest; northern hardwood forest ecotone research site located in central Maine. Data was collected to allow spatial and temporal validation of thermal models. Emphasis was placed primarily upon enhancing submodels of stomatal behavior, and secondarily upon enhancing boundary layer resistance submodels and accounting for thermal storage in soil and vegetation.

Vertical variations in the turbulent structure of the surface boundary layer over vineyards under unstable atmospheric conditions

USDA-ARS?s Scientific Manuscript database

Due to their highly-structured canopy, turbulent characteristics within and above vineyards, may not conform to those typically exhibited by other agricultural and natural ecosystems. Using data collected as a part of the Grape Remote sensing and Atmospheric Profiling and Evapotranspiration Experime...

Intercropped watermelon for weed suppression in a low-input organic system.

USDA-ARS?s Scientific Manuscript database

A multi-layered canopy provided by intercropping species with different growth forms can provide barriers for the germination of weed seeds and can allow for a more efficient utilization of resources that reduce competition to target crops from weeds. Intercropping can thus be an effective cultural ...

Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-A model based on free-air CO2 enrichment.

PubMed

Ikawa, Hiroki; Chen, Charles P; Sikma, Martin; Yoshimoto, Mayumi; Sakai, Hidemitsu; Tokida, Takeshi; Usui, Yasuhiro; Nakamura, Hirofumi; Ono, Keisuke; Maruyama, Atsushi; Watanabe, Tsutomu; Kuwagata, Tsuneo; Hasegawa, Toshihiro

2018-03-01

Achieving higher canopy photosynthesis rates is one of the keys to increasing future crop production; however, this typically requires additional water inputs because of increased water loss through the stomata. Lowland rice canopies presently consume a large amount of water, and any further increase in water usage may significantly impact local water resources. This situation is further complicated by changing the environmental conditions such as rising atmospheric CO 2 concentration ([CO 2 ]). Here, we modeled and compared evapotranspiration of fully developed rice canopies of a high-yielding rice cultivar (Oryza sativa L. cv. Takanari) with a common cultivar (cv. Koshihikari) under ambient and elevated [CO 2 ] (A-CO 2 and E-CO 2 , respectively) via leaf ecophysiological parameters derived from a free-air CO 2 enrichment (FACE) experiment. Takanari had 4%-5% higher evapotranspiration than Koshihikari under both A-CO 2 and E-CO 2 , and E-CO 2 decreased evapotranspiration of both varieties by 4%-6%. Therefore, if Takanari was cultivated under future [CO 2 ] conditions, the cost for water could be maintained at the same level as for cultivating Koshihikari at current [CO 2 ] with an increase in canopy photosynthesis by 36%. Sensitivity analyses determined that stomatal conductance was a significant physiological factor responsible for the greater canopy photosynthesis in Takanari over Koshihikari. Takanari had 30%-40% higher stomatal conductance than Koshihikari; however, the presence of high aerodynamic resistance in the natural field and lower canopy temperature of Takanari than Koshihikari resulted in the small difference in evapotranspiration. Despite the small difference in evapotranspiration between varieties, the model simulations showed that Takanari clearly decreased canopy and air temperatures within the planetary boundary layer compared to Koshihikari. Our results indicate that lowland rice varieties characterized by high-stomatal conductance can play a key role in enhancing productivity and moderating heat-induced damage to grain quality in the coming decades, without significantly increasing crop water use. © 2017 John Wiley & Sons Ltd.

FluorMODgui V3.0: A graphic user interface for the spectral simulation of leaf and canopy chlorophyll fluorescence

NASA Astrophysics Data System (ADS)

Zarco-Tejada, P. J.; Miller, J. R.; Pedrós, R.; Verhoef, W.; Berger, M.

2006-06-01

The FluorMODgui Graphic User Interface (GUI) software package developed within the frame of the FluorMOD project Development of a Vegetation Fluorescence Canopy Model is presented in this manuscript. The FluorMOD project was launched in 2002 by the European Space Agency (ESA) to advance the science of vegetation fluorescence simulation through the development and integration of leaf and canopy fluorescence models based on physical methods. The design of airborne or space missions dedicated to the measurement of solar-induced chlorophyll fluorescence using remote-sensing instruments require physical methods for quantitative feasibility analysis and sensor specification studies. The FluorMODgui model developed as part of this project is designed to simulate the effects of chlorophyll fluorescence at leaf and canopy levels using atmospheric inputs, running the leaf model, FluorMODleaf, and the canopy model, FluorSAIL, independently, through a coupling scheme, and by a multiple iteration protocol to simulate changes in the viewing geometry and atmospheric characteristics. Inputs for the FluorMODleaf model are the number of leaf layers, chlorophyll a+ b content, water equivalent thickness, dry matter content, fluorescence quantum efficiency, temperature, species type, and stoichiometry. Inputs for the FluorSAIL canopy model are a MODTRAN-4 6-parameter spectra or measured direct horizontal irradiance and diffuse irradiance spectra, a soil reflectance spectrum, leaf reflectance & transmittance spectra and a excitation-fluorescence response matrix in upward and downward directions (all from FluorMODleaf), 2 PAR-dependent coefficients for the fluorescence response to light level, relative azimuth angle and viewing zenith angle, canopy leaf area index, leaf inclination distribution function, and a hot spot parameter. Outputs available in the 400-1000 nm spectral range from the graphical user interface, FluorMODgui, are the leaf spectral reflectance and transmittance, and the canopy reflectance, with and without fluorescence effects. In addition, solar and sky irradiance on the ground, radiance with and without fluorescence on the ground, and top-of-atmosphere (TOA) radiances for bare soil and surroundings same as target are also produced. The models and documentation regarding the FluorMOD project can be downloaded at http://www.ias.csic.es/fluormod.

Analytical framework for reconstructing heterogeneous environmental variables from mammal community structure.

PubMed

Louys, Julien; Meloro, Carlo; Elton, Sarah; Ditchfield, Peter; Bishop, Laura C

2015-01-01

We test the performance of two models that use mammalian communities to reconstruct multivariate palaeoenvironments. While both models exploit the correlation between mammal communities (defined in terms of functional groups) and arboreal heterogeneity, the first uses a multiple multivariate regression of community structure and arboreal heterogeneity, while the second uses a linear regression of the principal components of each ecospace. The success of these methods means the palaeoenvironment of a particular locality can be reconstructed in terms of the proportions of heavy, moderate, light, and absent tree canopy cover. The linear regression is less biased, and more precisely and accurately reconstructs heavy tree canopy cover than the multiple multivariate model. However, the multiple multivariate model performs better than the linear regression for all other canopy cover categories. Both models consistently perform better than randomly generated reconstructions. We apply both models to the palaeocommunity of the Upper Laetolil Beds, Tanzania. Our reconstructions indicate that there was very little heavy tree cover at this site (likely less than 10%), with the palaeo-landscape instead comprising a mixture of light and absent tree cover. These reconstructions help resolve the previous conflicting palaeoecological reconstructions made for this site. Copyright © 2014 Elsevier Ltd. All rights reserved.

[Acumen function in leaves and its vertical distribution in a tropical rain forest of Costa Rica].

PubMed

Farji-Brener, Alejandro G; Valverde, Oscar; Paolini, Leonardo; de los Angeles La Torre, María; Quintero, Estela; Bonaccorso, Elisa; Arnedo, Luisa; Villalobos, Richard

2002-06-01

Water retention on the leaf surface can be maladaptive to the plant because it increases the colonization of epiphylls and interferes with the physiologic processes of the leaf, diminishing the photosynthetic capacity. To test if leaf driptips facilitate leaf drying after rainfall in a tropical rain forest of Costa Rica, we (1) experimentally measured the capacity to retain water on leaf surfaces of 30 plant species before and after driptip removal, and (2) analyzed the development of driptips along forest strata. We expected leaf driptips to be less developed in the upper strata due to the environmental conditions of the canopy (i.e., high solar radiation, strong winds and low relative humidity), which favor the natural drying of leaves. The presence of driptips increased 100% the water run off capacity of leaves in all the analyzed species. Also, the development of leaf driptips was smaller in canopy species than in understory species. Additionally, they became less developed in canopy species as trees increased in height. These results support the hypothesis that the adaptive role of driptips is to facilitate the drying of leaf surfaces.

Freshwater and Saline Loads of Dissolved Inorganic Nitrogen to Hood Canal and Lynch Cove, Western Washington

USGS Publications Warehouse

Paulson, Anthony J.; Konrad, Christopher P.; Frans, Lonna M.; Noble, Marlene; Kendall, Carol; Josberger, Edward G.; Huffman, Raegan L.; Olsen, Theresa D.

2006-01-01

Hood Canal is a long (110 kilometers), deep (175 meters) and narrow (2 to 4 kilometers wide) fjord of Puget Sound in western Washington. The stratification of a less dense, fresh upper layer of the water column causes the cold, saltier lower layer of the water column to be isolated from the atmosphere in the late summer and autumn, which limits reaeration of the lower layer. In the upper layer of Hood Canal, the production of organic matter that settles and consumes dissolved oxygen in the lower layer appears to be limited by the load of dissolved inorganic nitrogen (DIN): nitrate, nitrite, and ammonia. Freshwater and saline loads of DIN to Hood Canal were estimated from available historical data. The freshwater load of DIN to the upper layer of Hood Canal, which could be taken up by phytoplankton, came mostly from surface and ground water from subbasins, which accounts for 92 percent of total load of DIN to the upper layer of Hood Canal. Although DIN in rain falling on land surfaces amounts to about one-half of the DIN entering Hood Canal from subbasins, rain falling directly on the surface of marine waters contributed only 4 percent of the load to the upper layer. Point-source discharges and subsurface flow from shallow shoreline septic systems contributed less than 4 percent of the DIN load to the upper layer. DIN in saline water flowing over the sill into Hood Canal from Admiralty Inlet was at least 17 times the total load to the upper layer of Hood Canal. In September and October 2004, field data were collected to estimate DIN loads to Lynch Cove - the most inland marine waters of Hood Canal that routinely contain low dissolved-oxygen waters. Based on measured streamflow and DIN concentrations, surface discharge was estimated to have contributed about one-fourth of DIN loads to the upper layer of Lynch Cove. Ground-water flow from subbasins was estimated to have contributed about one-half of total DIN loads to the upper layer. In autumn 2004, the relative contribution of DIN from shallow shoreline septic systems to the upper layer was higher in Lynch Cove (23 percent) than in the entire Hood Canal. Net transport of DIN into Lynch Cove by marine currents was measured during August and October 2004-a time of high biological productivity. The net transport of lower-layer water into Lynch Cove was significantly diminished relative to the flow entering Hood Canal at its entrance. Even though the net transport of saline water into the lower layer of Lynch Cove was only 119 cubic meters per second, estuarine currents between 33 and 47 m were estimated to have carried more than 35 times the total freshwater load of DIN to the upper layer from surface and ground water, shallow shoreline septic systems, and direct atmospheric rainfall. The subsurface maximums in measured turbidity, chlorophyll a, particulate organic carbon, and particulate organic nitrogen strongly suggest that the upward mixing of nitrate-rich deeper water is a limiting factor in supplying DIN to the upper layer that enhances marine productivity in Lynch Cove. The presence of phosphate in the upper layer in the absence of dissolved inorganic nitrogen also suggests that the biological productivity that leads to low dissolved-oxygen concentrations in the lower layer of Lynch Cove is limited by the supply of nitrogen rather than by phosphate loads. Although the near-shore zones of the shallow parts of Lynch Cove were sampled, a biogeochemical signal from terrestrial nitrogen was not found. Reversals in the normal estuarine circulation suggest that if the relative importance of the DIN load of freshwater terrestrial and atmospheric sources and the DIN load from transport of saline water by the estuarine circulation in controlling dissolved-oxygen concentrations in Lynch Cove is to be better understood, then the physical forces driving Hood Canal circulation must be better defined.

Micro-spatial variation of soil metal pollution and plant recruitment near a copper smelter in Central Chile.

PubMed

Ginocchio, Rosanna; Carvallo, Gastón; Toro, Ignacia; Bustamante, Elena; Silva, Yasna; Sepúlveda, Nancy

2004-01-01

Soil chemical changes produced by metal smelters have mainly been studied on a large scale. In terms of plant survival, determination of small scale variability may be more important because less toxic microhabitats may represent safe sites for successful recruitment and thus for plant survival. Three dominant microhabitats (open spaces and areas below the canopy of Sphaeralcea obtusiloba and Baccharis linearis shrubs) were defined in a heavily polluted area near a copper smelter and characterised in terms of microclimate, general soil chemistry, total and extractable metal concentrations in the soil profile (A0 horizon, 0-5 and 15-20 cm depth), and seedling densities. Results indicated a strong variability in microclimate and soil chemistry not only in the soil profile but also among microhabitats. Air/soil temperatures, radiation and wind speed were much lower under the canopy of shrubs, particularly during the plant growth season. Soil acidification was detected on top layers (0-5 cm depth) of all microhabitats while higher concentrations of N, Cu and Cd were detected on litter and top soil layers below shrubs when compared to open spaces; however, high organic matter content below shrubs decreased bioavailability of metals. Plant recruitment was concentrated under shrub canopies; this may be explained as a result of the nursery effect exerted by shrubs in terms of providing a more favourable microclimate, along with better soil conditions in terms of macronutrients and metal bioavailability.

Are temperate mature forests buffered from invasive lianas?

USGS Publications Warehouse

Pavlovic, Noel B.; Leicht-Young, Stacey A.

2011-01-01

Mature and old-growth forests are often thought to be buffered against invasive species due to low levels of light and infrequent disturbance. Lianas (woody vines) and other climbing plants are also known to exhibit lower densities in older forests. As part of a larger survey of the lianas of the southern Lake Michigan region in mature and old-growth forests, the level of infestation by invasive lianas was evaluated. The only invasive liana detected in these surveys was Celastrus orbiculatus Thunb. (Celastraceae). Although this species had only attached to trees and reached the canopy in a few instances, it was present in 30% of transects surveyed, mostly as a component of the ground layer. Transects with C. orbiculatus had higher levels of soil potassium and higher liana richness than transects without. In contrast, transects with the native C. scandens had higher pH, sand content, and soil magnesium and lower organic matter compared to transects where it was absent. Celastrus orbiculatus appears to be a generalist liana since it often occurs with native lianas. Celastrus orbiculatus poses a substantial threat to mature forests as it will persist in the understory until a canopy gap or other disturbance provides the light and supports necessary for it to ascend to the canopy and damage tree species. As a result, these forests should be monitored by land managers so that C. orbiculatus eradication can occur while invasions are at low densities and restricted to the ground layer.

Native plant propagation and habitat restoration at Hakalau Forest National Wildlie Refuge, Hawaii

Treesearch

Baron Horiuchi; Jack Jeffrey

2002-01-01

Hakalau Forest NWR was established in 1985 under the authority of the Endangered Species Act to preserve and protect five species of endangered forest birds and their rain forest habitat. While most of the 32,730 acre refuge is closed canopy forest, over one hundred years of cattle grazing, logging and burning have convened about 5,000 acres (2,023 ha) of upper...

Short-term effects of fertilization on photosynthesis and leaf morphology of field-grown loblolly pine following long-term exposure to elevated CO2 concentration

Treesearch

Chris A. Maier; Sari Palmroth; Eric Ward

2008-01-01

We examined effects of a first nitrogen (N) fertilizer application on upper-canopy needle morphology and gas exchange in ~20-m-tall loblolly pine (Pinus taeda L.) exposed to elevated carbon dioxide concentration ([CO2]) for 9 years. Duke Forest free-air CO2 enrichment (FACE) plots were split and half of...

Concentrations and fluxes of isoprene and oxygenated VOCs at a French Mediterranean oak forest

NASA Astrophysics Data System (ADS)

Kalogridis, C.; Gros, V.; Sarda-Esteve, R.; Langford, B.; Loubet, B.; Bonsang, B.; Bonnaire, N.; Nemitz, E.; Genard, A.-C.; Boissard, C.; Fernandez, C.; Ormeño, E.; Baisnée, D.; Reiter, I.; Lathière, J.

2014-01-01

The CANOPEE project aims to better understand the biosphere-atmosphere exchanges of biogenic volatile organic compounds (BVOC) in the case of Mediterranean ecosystems and the impact of in-canopy processes on the atmospheric chemical composition above the canopy. Based on an intensive field campaign, the objective of our work was to determine the chemical composition of the air inside a canopy as well as the net fluxes of reactive species between the canopy and the boundary layer. Measurements were carried out during spring 2012 at the Oak Observatory of the Observatoire de Haute Provence (O3HP) located in the southeast of France. The field site presents one dominant tree species, Quercus pubescens L., a typical Mediterranean species which features large isoprene emission rates. Mixing ratios of isoprene, its degradation products methylvinylketone (MVK) and methacrolein (MACR) and several other oxygenated VOC (OxVOC) were measured above the canopy using an online proton transfer reaction mass spectrometer (PTR-MS), and fluxes were calculated by the disjunct eddy covariance approach. The O3HP site was found to be a very significant source of isoprene emissions, with daily maximum ambient concentrations ranging between 2-16 ppbv inside and 2-5 ppbv just above the top of the forest canopy. Significant isoprene fluxes were observed only during daytime, following diurnal cycles with midday net emission fluxes from the canopy ranging between 2-8 mg m-2 h1. Net isoprene normalised flux (at 30 °C, 1000 μmol m-2 s-1) was estimated at 6.6 mg m-2 h-1. The (MVK+MACR)-to-isoprene ratio was used to assess the degree of isoprene oxidation. In-canopy chemical oxidation of isoprene was found to be weak, as indicated by the low (MVK+MACR)-to-isoprene ratio (~ 0.13) and low MVK+MACR fluxes, and did not seem to have a significant impact on isoprene concentrations and fluxes above the canopy. Evidence of direct emission of methanol was also found exhibiting maximum daytime fluxes ranging between 0.2-0.4 mg m-2 h-1, whereas flux values for monoterpenes and others OxVOC such as acetone and acetaldehyde were below the detection limit.

Analysis of Terrestrial Carbon Stocks in a Small Catchment of Northeastern Siberia

NASA Astrophysics Data System (ADS)

Heard, K.; Natali, S.; Bunn, A. G.; Loranty, M. M.; Kholodov, A. L.; Schade, J. D.; Berner, L. T.; Spektor, V.; Zimov, N.; Alexander, H. D.

2015-12-01

As arctic terrestrial ecosystems comprise about one-third of the global terrestrial ecosystem carbon total, understanding arctic carbon cycling and the feedback of terrestrial carbon pools to accelerated warming is an issue of global concern. For this research, we examined above- and belowground carbon stocks in a larch-dominated catchment underlain by yedoma and located within the Kolyma River watershed in northeastern Siberia. We quantified carbon stocks in vegetation, active layer, and permafrost, and we assessed the correlation between plant and active layer carbon pools and four environmental correlates — slope, solar insolation, canopy density, and leaf area index ­— at 20 sites. Carbon in the active layer was approximately four times greater than aboveground carbon pools (972 g C m-2), and belowground carbon to 1 m depth was approximately 18 times greater than aboveground carbon pools. Canopy density and slope had a robust positive association with aboveground carbon pools, and soil moisture was positively related to %C in organic, thawed mineral and permafrost soil. Thaw depth was negatively correlated with moss cover and larch biomass, highlighting the importance of vegetation and surface characteristics on permafrost carbon vulnerability. These data suggest that landscape and ecosystem characteristics affect carbon accumulation and storage, but they also play an important role in stabilizing permafrost carbon pools.

Spectral Short-circuiting and Wake Production within the Canopy Trunk Space of an Alpine Hardwood Forest

NASA Astrophysics Data System (ADS)

Cava, Daniela; Katul, Gabriel G.

2008-03-01

Using synchronous multi-level high frequency velocity measurements, the turbulence spectra within the trunk space of an alpine hardwood forest were analysed. The spectral short-circuiting of the energy cascade for each velocity component was well reproduced by a simplified spectral model that retained return-to-isotropy and component-wise work done by turbulence against the drag and wake production. However, the use of an anisotropic drag coefficient was necessary to reproduce these measured component-wise spectra. The degree of anisotropy in the vertical drag was shown to vary with the element Reynolds number. The wake production frequency in the measured spectra was shown to be consistent with the vortex shedding frequency at constant Strouhal number given by f vs = 0.21 ū/d, where d can be related to the stem diameter at breast height ( dbh) and ū is the local mean velocity. The energetic scales, determined from the inflection point instability at the canopy atmosphere interface, appear to persist into the trunk space when {C_{du} a_{cr} h_c /β ≫ 1}, where C du is the longitudinal drag coefficient, a cr is the crown-layer leaf area density, h c is the canopy height, and β is the dimensionless momentum absorption at the canopy top.

Topographic Distributions of Emergent Trees in Tropical Forests of the Osa Peninsula, Costa Rica

NASA Astrophysics Data System (ADS)

Balzotti, C.; Asner, G. P.; Taylor, P.; Cole, R. J.; Osborne, B. B.; Cleveland, C. C.; Porder, S.; Townsend, A. R.

2015-12-01

Tropical rainforests are reservoirs of terrestrial carbon and biodiversity. Large and often emergent trees store disproportionately large amounts of aboveground carbon and greatly influence the structure and functioning of tropical rainforests. Despite their importance, controls on the abundance and distribution of emergent trees are largely unknown across tropical landscapes. Conventional field approaches are limited in their ability to characterize patterns in emergent trees across vast landscapes with varying environmental conditions and floristic composition. Here we used a high-resolution light detection and ranging (LiDAR) sensor, aboard the Carnegie Airborne Observatory Airborne Taxonomic Mapping System (CAO-AToMS), to examine the abundance and distribution of tall emergent tree canopies (ETC) relative to surrounding tree canopies (STC), across the Osa Peninsula, a geologically and topographically diverse region of Costa Rica. The abundance of ETC was clearly influenced by fine-scale topographic variation, with distribution patterns that held across a variety of geologic substrates. Specifically, the density of ETC was much greater on lower slopes and in valleys, compared to upper slopes and ridges. Furthermore, using the CAO high-fidelity imaging spectrometer, ETC had a different spectral signature than that of the STC. Most notably, ETC had lower foliar N than STC, which was verified with an independent field survey of canopy leaf chemistry. The underlying mechanisms to explain the topographic-dependence of ETCs and linkages to canopy N are unknown, and remain an important area of research.

[Research on output and quality of Panax notoginseng and annual change characteristics of N, P and K nutrients of planting soil under stereo-cultivation].

PubMed

Huang, Chun-mei; Cui, Xiu-ming; Lan, Lei; Chen, Wei-dong; Wang, Cheng-xiao; Yang, Xiao-yan; Lu, Da-hui; Yang, Ye

2015-08-01

The output and agronomic characters of 3-year-old Panax notoginseng cultured under stereo structure (upper, middle and down layers) were investigated, and the annual change of N, P and K of its planting soil were also studied. Results showed that, compared with field cultured Panax notoginseng, growth vigour and output of stereo-cultivation were significantly lower. But the total production of the 3 layers was 1.6 times of field. The growth vigor and production of P. notoginseng was in the order of upper layer > middle layer > down layer. The content of ginsenoside in rhizome, root tuber and hair root of P. notoginseng was in the order of upper layer > field > middle layer > down layer. Organic matter content and pH of stereo-cultivation soil decreased with the prolonging of planting time, which with the same trend of yield. Organic matter content of stereo-cultivation soil was significantly higher than field, but the pH was significantly lower. Contents of total and available N, P and K in stereo-cultivation soil and field decreased with the prolonging of planting time. The content of N and P were in the order of upper layer > middle layer > yield > down layer, the content of K was in the order of upper layer > middle layer > down layer > yield. Compared with field, the proportion of N and P in the organ of underground (rhizome, root tuber and hair root) of upper layer were increased, while decreased in middle and down layers. Proportion of K in underground decreased significantly of the 3 layers. In conclusion, the agronomic characters and production of stereo-cultivation were significantly lower than that of yield. But the total production of the 3 layers were significantly higher than field of unit area. And the aim of improving land utilization efficiency was achieved. Nutritions in the soil of stereo-cultivation were enough to support the development of P. notoginseng, which was not the cause of weak growth and low production. The absorbing ability of P. notoginseng to N, P and K nutrients was decreased by stereo-cultivation mode. So, improve the growth vigour of P. notoginseng from the perspective of adjusting the stereo-cultivation mode so as to improve the nutrient absorption capacity is the future direction.

Isotopic characteristics of canopies in simulated leaf assemblages

NASA Astrophysics Data System (ADS)

Graham, Heather V.; Patzkowsky, Mark E.; Wing, Scott L.; Parker, Geoffrey G.; Fogel, Marilyn L.; Freeman, Katherine H.

2014-11-01

The geologic history of closed-canopy forests is of great interest to paleoecologists and paleoclimatologists alike. Closed canopies have pronounced effects on local, continental and global rainfall and temperature patterns. Although evidence for canopy closure is difficult to reconstruct from the fossil record, the characteristic isotope gradients of the ;canopy effect; could be preserved in leaves and proxy biomarkers. To assess this, we employed new carbon isotopic data for leaves collected in diverse light environments within a deciduous, temperate forest (Maryland, USA) and for leaves from a perennially closed canopy, moist tropical forest (Bosque Protector San Lorenzo, Panamá). In the tropical forest, leaf carbon isotope values range 10‰, with higher δ13Cleaf values occurring both in upper reaches of the canopy, and with higher light exposure and lower humidity. Leaf fractionation (Δleaf) varied negatively with height and light and positively with humidity. Vertical 13C enrichment in leaves largely reflects changes in Δleaf, and does not trend with δ13C of CO2 within the canopy. At the site in Maryland, leaves express a more modest δ13C range (∼6‰), with a clear trend that follows both light and leaf height. Using a model we simulate leaf assemblage isotope patterns from canopy data binned by elevation. The re-sampling (bootstrap) model determined both the mean and range of carbon isotope values for simulated leaf assemblages ranging in size from 10 to over 1000 leaves. For the tropical forest data, the canopy's isotope range is captured with 50 or more randomly sampled leaves. Thus, with a sufficient number of fossil leaves it is possible to distinguish isotopic gradients in an ancient closed canopy forest from those in an open forest. For very large leaf assemblages, mean isotopic values approximate the δ13C of carbon contributed by leaves to soil and are similar to observed δ13Clitter values at forested sites within Panamá, including the site where leaves were sampled. The model predicts a persistent ∼1‰ difference in δ13Clitter for the two sites which is consistent with higher water availability in the tropical forests. This work provides a new framework for linking contemporary ecological observations to the geochemical record using flux-weighted isotope data and lends insights to the effect of forest architecture on organic and isotopic records of ancient terrestrial ecosystems. How many leaves from a litter assemblage are necessary to distinguish the isotopic gradient characteristics of canopy closure? Are mean δ13Cleaf values for a litter assemblage diagnostic of a forest biome? Can we predict the δ13C values of cumulative litter, soil organic matter, and organic carbon in sedimentary archives using litter flux and isotope patterns in canopies? We determined the δ13C range and mean for different sized assemblages of leaves sampled from data for each forest. We re-sampled very high numbers of leaves in order to estimate the isotopic composition of cumulative carbon delivered to soils as litter, and compared these results to available data from forest soils. Modeled leaf and soil organic carbon isotope patterns in this study offer insights to how forest structure can be derived from carbon isotope measurements of fossil leaves, as well as secondary material - such as teeth, hair, paleosol carbonates, or organic soil carbon (van der Merwe and Medina, 1989; Koch, 1998; Secord et al., 2008; Levin et al., 2011).Distinct climate and seasonal difference in the Panamá and Maryland, USA forests are reflected in their canopy isotope gradients. In the tropical forest of Panamá, leaves are produced throughout the year within a canopy that is both extensively and persistently closed (Leigh, 1975; Lowman and Wittman, 1996). In the temperate forest of Maryland leaves are produced during the spring when canopy conditions are relatively open (Korner and Basler, 2010).

Kinetic energy of throughfall in a highly diverse forest ecosystem in the humid subtropics

NASA Astrophysics Data System (ADS)

Geißler, Christian; Kühn, Peter; Scholten, Thomas

2010-05-01

After decades of research it is generally accepted that vegetation is a key factor in controlling soil erosion. Therefore, in ecosystems where erosion is a serious problem, afforestation is a common measure against erosion. Most of the studies in the last decades focused on agricultural systems and less attention was paid to natural systems. To understand the mechanisms preventing soil erosion in natural systems the processes have to be studied in detail and gradually. The first step and central research question is on how the canopies of the tree layer alter the properties of rainfall and generate throughfall. Kinetic energy is a widely used parameter to estimate the erosion potential of open field rainfall and throughfall. In the past, numerous studies have shown that vegetation of a certain height enhances the kinetic energy under the canopy (Chapman 1948, Mosley 1982, Vis 1986, Hall & Calder 1993, Nanko et al. 2006, Nanko et al. 2008) in relation to open field rainfall. This is mainly due to a shift in the drop size distribution to less but larger drops possessing a higher amount of kinetic energy. In vital forest ecosystems lower vegetation (shrubs, herbs) as well as a continuous litter layer protects the forest soil from the impact of large drops. The influence of biodiversity, specific forest stands or single species in this process system is still in discussion. In the present study calibrated splash cups (after Ellison 1947, Geißler et al. under review) have been used to detect differences in kinetic energy on the scale of specific species and on the scale of forest stands of contrasting age and biodiversity in a natural forest ecosystem. The splash cups have been calibrated experimentally using a laser disdrometer. The results show that the kinetic energy of throughfall produced by the tree layer increases with the age of the specific forest stand. The average throughfall kinetic energy (J m-2) is about 2.6 times higher in forests than under open field conditions. Most of the energy is supposed to be absorbed by shrubs, herbs and the litter layer. For some species in the shrub and herb layer throughfall drops are crucial for seed dispersal (Nakanishi 2002). A higher kinetic energy of throughfall should be advantageous for seed dispersal and probably support biodiversity. Further, it is shown that the variability of kinetic energy in forests varies among the age of the forest stand which can be related to the forest structure. In our case there is a high variability in young forests (< 30 years) due to selective logging (some older trees were left out) and gaps in the tree layer. Old forests (> 80 years) also have a high variability in kinetic energy. There, external influences like snow and wind break result in a fragmentary tree layer which allows less erosive rainfall to reach the forest floor. Medium aged forests are more homogenous regarding canopy closure or tree heights. Generally, the variability of kinetic energy in forests is increasing with the amount of rainfall. Moreover, it is shown that the kinetic energy of throughfall is species specific. For the investigated tree species the values range between 24.41 J m-2 mm-1 (Daphniphyllum oldhamii) and 33.24 J m-2 mm-1 (Schima superba) while the concurrent rainfall in the open field has an average kinetic energy of 6.75 J m-2 mm-1. Leaf size and canopy architecture are supposed to be two of the controlling variables for specific species. These results give implications for afforestation measures and are important input variables for modeling of erosion processes. Chapman, G., 1948. Size of raindrops and their striking force at the soil surface in a Red Pine plantation. Transactions - American Geophysical Union, 29: 664-670. Ellison, W.D., 1947. Soil Erosion Studies - Part II. Agricultural Engineering, 28: 197-201. Geißler, C., Kühn, P., Böhnke, M., Bruelheide, H., Shi, X., Scholten, T., under review: Measuring splash erosion potential under vegetation using sand-filled splash cups. Hall, R.L., Calder, I.R., 1993. Drop size modification by forest canopies: measurements using a disdrometer. Journal of Geophysical Research (D10), 98: 18465-18470. Mosley, M.P., 1982. The effect of a New Zealand beech forest canopy on the kinetic energy of water drops and on surface erosion. Earth Surface Processes and Landforms, 7: 103-107. Nakanishi, H., 2002. Splash dispersal by raindrops. Ecological research, 17: 663-671. Nanko, K., Hotta, N., Suzuki, M., 2006. Evaluating the influence of canopy species and meteorological factors on throughfall drop size distribution. Journal of Hydrology, 329: 422-431. Nanko, K., Mizugaki, S., Onda, Y., 2008. Estimation of soil splash detachment rates on the forest floor of an unmanaged Japanese cypress plantation based on field measurements of throughfall drop sizes and velocities. Catena, 72: 348-361. Vis, M., 1986. Interception, drop size distribution and rainfall kinetic energy in four Columbian forest ecosystems. Earth Surface Processes and Landforms, 11: 591-603.

Adjustment of Turbulent Boundary-Layer Flow to Idealized Urban Surfaces: A Large-Eddy Simulation Study

NASA Astrophysics Data System (ADS)

Cheng, Wai-Chi; Porté-Agel, Fernando

2015-05-01

Large-eddy simulations (LES) are performed to simulate the atmospheric boundary-layer (ABL) flow through idealized urban canopies represented by uniform arrays of cubes in order to better understand atmospheric flow over rural-to-urban surface transitions. The LES framework is first validated with wind-tunnel experimental data. Good agreement between the simulation results and the experimental data are found for the vertical and spanwise profiles of the mean velocities and velocity standard deviations at different streamwise locations. Next, the model is used to simulate ABL flows over surface transitions from a flat homogeneous terrain to aligned and staggered arrays of cubes with height . For both configurations, five different frontal area densities , equal to 0.028, 0.063, 0.111, 0.174 and 0.250, are considered. Within the arrays, the flow is found to adjust quickly and shows similar structure to the wake of the cubes after the second row of cubes. An internal boundary layer is identified above the cube arrays and found to have a similar depth in all different cases. At a downstream location where the flow immediately above the cube array is already adjusted to the surface, the spatially-averaged velocity is found to have a logarithmic profile in the vertical. The values of the displacement height are found to be quite insensitive to the canopy layout (aligned vs. staggered) and increase roughly from to as increases from 0.028 to 0.25. Relatively larger values of the aerodynamic roughness length are obtained for the staggered arrays, compared with the aligned cases, and a maximum value of is found at for both configurations. By explicitly calculating the drag exerted by the cubes on the flow and the drag coefficients of the cubes using our LES results, and comparing the results with existing theoretical expressions, we show that the larger values of for the staggered arrays are related to the relatively larger drag coefficients of the cubes for that configuration compared with the aligned one. The effective mixing length within and above different cube arrays is also calculated and a local maximum of within the canopy is found in all the cases, with values ranging from to . These patterns of are different from those used in existing urban canopy models.

Root growth dynamics linked to above-ground growth in walnut (Juglans regia).

PubMed

Contador, Maria Loreto; Comas, Louise H; Metcalf, Samuel G; Stewart, William L; Porris Gomez, Ignacio; Negron, Claudia; Lampinen, Bruce D

2015-07-01

Examination of plant growth below ground is relatively scant compared with that above ground, and is needed to understand whole-plant responses to the environment. This study examines whether the seasonal timing of fine root growth and the spatial distribution of this growth through the soil profile varies in response to canopy manipulation and soil temperature. Plasticity in the seasonal timing and vertical distribution of root production in response to canopy and soil water manipulation was analysed in field-grown walnut (Juglans regia 'Chandler') using minirhizotron techniques. Root production in walnuts followed a unimodal curve, with one marked flush of root growth starting in mid-May, with a peak in mid-June. Root production declined later in the season, corresponding to increased soil temperature, as well as to the period of major carbohydrate allocation to reproduction. Canopy and soil moisture manipulation did not influence the timing of root production, but did influence the vertical distribution of roots through the soil profile. Water deficit appeared to promote root production in deeper soil layers for mining soil water. Canopy removal appeared to promote shallow root production. The findings of this study add to growing evidence that root growth in many ecosystems follows a unimodal curve with one marked flush of root growth in coordination with the initial leaf flush of the season. Root vertical distribution appeared to have greater plasticity than timing of root production in this system, with temperature and/or carbohydrate competition constraining the timing of root growth. Effects on root distribution can have serious impacts on trees, with shallow rooting having negative impacts in years with limited soil water or positive impacts in years with wet springs, and deep rooting having positive impacts on soil water mining from deeper soil layers but negative impacts in years with wet springs. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Estimating the influence of different urban canopy cover types on atmospheric particulate matter (PM10) pollution abatement in London UK.

NASA Astrophysics Data System (ADS)

Tallis, Matthew; Freer-Smith, Peter; Sinnett, Danielle; Aylott, Matthew; Taylor, Gail

2010-05-01

In the urban environment atmospheric pollution by PM10 (particulate matter with a diameter less than 10 x 10-6 m) is a problem that can have adverse effects on human health, particularly increasing rates of respiratory disease. The main contributors to atmospheric PM10 in the urban environment are road traffic, industry and power production. The urban tree canopy is a receptor for removing PM10s from the atmosphere due to the large surface areas generated by leaves and air turbulence created by the structure of the urban forest. In this context urban greening has long been known as a mechanism to contribute towards PM10 removal from the air, furthermore, tree canopy cover has a role in contributing towards a more sustainable urban environment. The work reported here has been carried out within the BRIDGE project (SustainaBle uRban plannIng Decision support accountinG for urban mEtabolism). The aim of this project is to assess the fluxes of energy, water, carbon dioxide and particulates within the urban environment and develope a DSS (Decision Support System) to aid urban planners in sustainable development. A combination of published urban canopy cover data from ground, airborne and satellite based surveys was used. For each of the 33 London boroughs the urban canopy was classified to three groups, urban woodland, street trees and garden trees and each group quantified in terms of ground cover. The total [PM10] for each borough was taken from the LAEI (London Atmospheric Emissions Inventory 2006) and the contribution to reducing [PM10] was assessed for each canopy type. Deposition to the urban canopy was assessed using the UFORE (Urban Forest Effects Model) approach. Deposition to the canopy, boundary layer height and percentage reduction of the [PM10] in the atmosphere was assessed using both hourly meterological data and [PM10] and seasonal data derived from annual models. Results from hourly and annual data were compared with measured values. The model was then applied to future predictions of annual [PM10] and future canopy cover scenarios for London. The contribution of each canopy type subjected to the different atmospheric [PM10] of the 33 London boroughs now and in the future will be discussed. Implementing these findings into a decision support system (DSS) for sustainable urban planning will also be discussed.

Seasonal variation of volatile organic compounds exchange above a periurban Holm oak forest on the Mediterranean coast

NASA Astrophysics Data System (ADS)

Savi, Flavia; Juráň, Stanislav; Fares, Silvano

2015-04-01

Bi-directional exchanges of Volatile Organic Compounds (VOCs) were investigated on a Mediterranean Holm oak forest in Castelporziano presidential estate, a peri-urban forest near the coast of Tyrrhenian sea, 20 Km from Rome downtown, Italy. Two field campaigns were carried out in January and August 2014 to explore VOCs fluxes in two seasons with different climate conditions and physiological activity of plants. Concentration of 23 compounds was measured using a proton transfer reaction - mass spectrometer (PTR-MS). These included biogenic products (BVOC - isoprene, monoterpenes), oxygenated BVOC (OVOC - methanol, acetaldehyde acetone) and VOC of anthropogenic origin (AVOC - acetonitrile, benzene, hexenal, toluene, xylenes). Each half-hour, we switched between measurement at high frequency above the canopy and sampling through a 5-levels gradient from soil to above the canopy. We used the eddy covariance technique to calculate fluxes above the canopy, while gradient measurements were used to estimate in-canopy source and sink distribution by applying an Inverse Lagrangian Transport Model (Karl et al., 2004, J.Geophys.Res). Ozone and NOx concentrations were also measured to better correlate VOCs exchanges with this important secondary pollutant. Low temperatures lead to almost negligible BVOC fluxes during Winter. Summer fluxes were largely represented by BVOC (mainly monoterpenes). The highest fluxes (up to 2.4 nmol m-2 s-1) were recorded in the central hour of the day in response to high light and temperature. Oxygenated compounds (methanol and acetone) showed different behaviour during the two seasons: in Winter a net release of these compounds was observed, while in Summer the canopy acted as a sink for OVOC except for the hottest hours when we observed significant emissions. OVOC source-sink distribution analysis helped identifying the canopy layers which mostly contributed to VOCs exchanges, thus underlining the importance of forest canopies in VOCs exchanges in the soil-plant-atmosphere continuum. AVOC (xylene, toluene and benzene) concentration in Winter was double than in Summer, despite the intense vehicular traffic towards the beach nearby the forest stand in August. Both in Winter and Summer, emission of AVOC from the forest were measured, although we excluded a biogenic source but rather a resuspension of compounds previously accumulated at night under shallow atmospheric boundary layer. Photochemically produced ozone was high during the central hours of the day (up to 40 and 70 ppb in Winter and Summer, respectively), while nocturnal concentration went down to less than 20 ppb. Stomata explained almost the totality of ozone fluxes during day (Fares et al., 2014, Agr.Forest.Meteorol), while other non-stomatal sinks including chemical reactions with VOcs were responsible for nocturnal ozone removal. We discuss here the importance of forest canopies in the interaction between VOC and secondary pollutants, such as ozone and NOx in a peculiar Mediterranean site where the sea-land breeze circulation allows a strong mixing between contaminated air from the city and cleaner air from the sea under high UV radiations and air temperatures.

Maglev performance of a double-layer bulk high temperature superconductor above a permanent magnet guideway

NASA Astrophysics Data System (ADS)

Deng, Z.; Wang, J.; Zheng, J.; Lin, Q.; Zhang, Y.; Wang, S.

2009-05-01

In order to improve the performance of the present high temperature superconducting (HTS) maglev vehicle system, the maglev performance of single- and double-layer bulk high temperature superconductors (HTSC) was investigated above a permanent magnet guideway (PMG). It is found that the maglev performance of a double-layer bulk HTSC is not a simple addition of each layer's levitation and guidance force. Moreover, the applied magnetic field at the position of the upper layer bulk HTSC is not completely shielded by the lower layer bulk HTSC either. 53.5% of the levitation force and 27.5% of the guidance force of the upper layer bulk HTSC are excited in the double-layer bulk HTSC arrangement in the applied field-cooling condition and working gap, bringing a corresponding improvement of 16.9% and 8.8% to the conventional single-layer bulk HTSC. The present research implies that the cost performance of upper layer bulk HTSC is a little low for the whole HTS maglev system.

Are cicadas (Diceroprocta apache) both a "keystone" and a "critical-link" species in lower Colorado River riparian communities?

USGS Publications Warehouse

Andersen, Douglas C.

1994-01-01

Apache cicada (Homoptera: Cicadidae: Diceroprocta apache Davis) densities were estimated to be 10 individuals/m2 within a closed-canopy stand of Fremont cottonwood (Populus fremontii) and Goodding willow (Salix gooddingii) in a revegetated site adjacent to the Colorado River near Parker, Arizona. Coupled with data drawn from the literature, I estimate that up to 1.3 cm (13 1/m2) of water may be added to the upper soil layers annually through the feeding activities of cicada nymphs. This is equivalent to 12% of the annual precipitation received in the study area. Apache cicadas may have significant effects on ecosystem functioning via effects on water transport and thus act as a critical-link species in this southwest desert riverine ecosystem. Cicadas emerged later within the cottonwood-willow stand than in relatively open saltcedar-mesquite stands; this difference in temporal dynamics would affect their availability to several insectivorous bird species and may help explain the birds' recent declines. Resource managers in this region should be sensitive to the multiple and strong effects that Apache cicadas may have on ecosystem structure and functioning.

Assessing measurement uncertainty in meteorology in urban environments

NASA Astrophysics Data System (ADS)

Curci, S.; Lavecchia, C.; Frustaci, G.; Paolini, R.; Pilati, S.; Paganelli, C.

2017-10-01

Measurement uncertainty in meteorology has been addressed in a number of recent projects. In urban environments, uncertainty is also affected by local effects which are more difficult to deal with than for synoptic stations. In Italy, beginning in 2010, an urban meteorological network (Climate Network®) was designed, set up and managed at national level according to high metrological standards and homogeneity criteria to support energy applications. The availability of such a high-quality operative automatic weather station network represents an opportunity to investigate the effects of station siting and sensor exposure and to estimate the related measurement uncertainty. An extended metadata set was established for the stations in Milan, including siting and exposure details. Statistical analysis on an almost 3-year-long operational period assessed network homogeneity, quality and reliability. Deviations from reference mean values were then evaluated in selected low-gradient local weather situations in order to investigate siting and exposure effects. In this paper the methodology is depicted and preliminary results of its application to air temperature discussed; this allowed the setting of an upper limit of 1 °C for the added measurement uncertainty at the top of the urban canopy layer.

The urban boundary-layer field campaign in marseille (ubl/clu-escompte): set-up and first results

NASA Astrophysics Data System (ADS)

Mestayer, P.G.; Durand, P.; Augustin, P.; Bastin, S.; Bonnefond, J.-M.; Benech, B.; Campistron, B.; Coppalle, A.; Delbarre, H.; Dousset, B.; Drobinski, P.; Druilhet, A.; Frejafon, E.; Grimmond, C.S.B.; Groleau, D.; Irvine, M.; Kergomard, C.; Kermadi, S.; Lagouarde, J.-P.; Lemonsu, A.; Lohou, F.; Long, N.; Masson, V.; Moppert, C.; Noilhan, J.; Offerle, B.; Oke, T.R.; Pigeon, G.; Puygrenier, V.; Roberts, S.; Rosant, J.-M.; Sanid, F.; Salmond, J.; Talbaut, M.; Voogt, J.

The UBL/CLU (urban boundary layer/couche limite urbaine) observation and modelling campaign is a side-project of the regional photochemistry campaign ESCOMPTE. UBL/CLU focuses on the dynamics and thermodynamics of the urban boundary layer of Marseille, on the Mediterranean coast of France. The objective of UBL/CLU is to document the four-dimensional structure of the urban boundary layer and its relation to the heat and moisture exchanges between the urban canopy and the atmosphere during periods of low wind conditions, from June 4 to July 16, 2001. The project took advantage of the comprehensive observational set-up of the ESCOMPTE campaign over the Berre-Marseille area, especially the ground-based remote sensing, airborne measurements, and the intensive documentation of the regional meteorology. Additional instrumentation was installed as part of UBL/CLU. Analysis objectives focus on (i) validation of several energy balance computational schemes such as LUMPS, TEB and SM2-U, (ii) ground truth and urban canopy signatures suitable for the estimation of urban albedos and aerodynamic surface temperatures from satellite data, (iii) high resolution mapping of urban land cover, land-use and aerodynamic parameters used in UBL models, and (iv) testing the ability of high resolution atmospheric models to simulate the structure of the UBL during land and sea breezes, and the related transport and diffusion of pollutants over different districts of the city. This paper presents initial results from such analyses and details of the overall experimental set-up.

Conserving pollinators in North American forests: A review

Treesearch

James L. Hanula; Michael D. Ulyshen; Scott Horn

2016-01-01

Bees and butterflies generally favor open forest habitats regardless of forest type, geographic region, or methods used to create these habitats. Dense shrub layers of native or nonnative species beneath forest canopies negatively impact herbaceous plant cover and diversity, and pollinators. The presence of nonnative flowers as a source of nectar, pollen, or larval...

Structure and composition of historical longleaf pine ccosystems in Mississippi, USA

Treesearch

Brice B. Hanberry; Keith Coursey; John S. Kush

2018-01-01

Longleaf pine (Pinus palustris) historically was a widespread ecosystem composed of a simple tree canopy and grasslands ground layer. After widespread loss of this ecosystem due to logging and fire exclusion, little quantitative information exists about historical structure for restoration goals. We identified composition in De Soto National Forest and Pearl River...

Tests of wildlife habitat models to evaluate oak-mast production

USGS Publications Warehouse

Schroeder, R.L.; Vangilder, L.D.

1997-01-01

We measured oak-mast production and forest structure and composition in the Ozark Mountains of Missouri and tested the accuracy of oak-mast prediction variables from 5 Habitat Suitability Index (HSI) species models. Acorn production was positively associated with several measures of abundance and canopy cover of oak trees, and with an index of mast production for all 5 HSI models. We developed 2 modified oak-mast models, based on inputs related to either oak tree density or oak canopy cover and diversity of oak tree species. The revised models accounted for 22-32% of the variance associated with acorn abundance. Future tests of HSI models should consider: (1) the concept of upper limits imposed by habitat and the effects of nonhabitat factors; (2) the benefits of a top-down approach to model development; and (3) testing models across broad geographic regions.

Spatial variability of throughfall in a stand of Scots pine (Pinus sylvestris L.) with deciduous admixture as influenced by canopy cover and stem distance

NASA Astrophysics Data System (ADS)

Kowalska, Anna; Boczoń, Andrzej; Hildebrand, Robert; Polkowska, Żaneta

2016-07-01

Vegetation cover affects the amount of precipitation, its chemical composition and its spatial distribution, and this may have implications for the distribution of water, nutrients and contaminants in the subsurface soil layer. The aim of this study was a detailed diagnosis of the spatio-temporal variability in the amount of throughfall (TF) and its chemical components in a 72-year-old pine stand with an admixture of oak and birch. The spatio-temporal variability in the amount of TF water and the concentrations and deposition of the TF components were studied. The components that are exchanged in canopy (H+, K, Mg, Mn, DOC, NH4+) were more variable than the components whose TF deposition is the sum of wet and dry (including gas) deposition and which undergo little exchange in the canopy (Na, Cl, NO3-, SO42-). The spatial distribution was temporally stable, especially during the leafed period. This study also investigated the effect of the selected pine stand characteristics on the spatial distribution of throughfall and its chemical components; the characteristics included leaf area index (LAI), the proportion of the canopy covered by deciduous species and pine crowns, and the distance from the nearest tree trunk. The LAI measured during the leafed and leafless periods had the greatest effect on the spatial distribution of TF deposition. No relationship was found between the spatial distribution of the amount of TF water and (i) the LAI; (ii) the canopy cover of broadleaf species or pines; or (iii) the distance from the trunks.

Crop tree release increases growth of red oak sawtimber in southern New England: 12-year results

Treesearch

Jeffrey S. Ward

2008-01-01

In winter 1995, five crop tree thinning plots were established in central Connecticut. Stands were mature red oak sawtimber (74-94 years old) with no history of prior management. Crop trees were upper canopy red oaks (northern red, black, and scarlet) with a potential grade 1 or 2 butt log. Growth of crop trees was monitored for the next 12 years. Diameter, cubic-foot...

[Effects of land use changes on soil water conservation in Hainan Island, China].

PubMed

Wen, Zhi; Zhao, He; Liu, Lei; OuYang, Zhi Yun; Zheng, Hua; Mi, Hong Xu; Li, Yan Min

2017-12-01

In tropical areas, a large number of natural forests have been transformed into other plantations, which affected the water conservation function of terrestrial ecosystems. In order to clari-fy the effects of land use changes on soil water conservation function, we selected four typical land use types in the central mountainous region of Hainan Island, i.e., natural forests with stand age greater than 100 years (VF), secondary forests with stand age of 10 years (SF), areca plantations with stand age of 12 years (AF) and rubber plantations with stand age of 35 years (RF). The effects of land use change on soil water holding capacity and water conservation (presented by soil water index, SWI) were assessed. The results showed that, compared with VF, the soil water holding capacity index of other land types decreased in the top soil layer (0-10 cm). AF had the lowest soil water holding capacity in all soil layers. Soil water content and maximum water holding capacity were significantly related to canopy density, soil organic matter and soil bulk density, which indicated that canopy density, soil organic matter and compactness were important factors influencing soil water holding capacity. Compared to VF, soil water conservation of SF, AF and RF were reduced by 27.7%, 54.3% and 11.5%, respectively. The change of soil water conservation was inconsistent in different soil layers. Vegetation canopy density, soil organic matter and soil bulk density explained 83.3% of the variance of soil water conservation. It was suggested that land use conversion had significantly altered soil water holding capacity and water conservation function. RF could keep the soil water better than AF in the research area. Increasing soil organic matter and reducing soil compaction would be helpful to improve soil water holding capacity and water conservation function in land management.

Estimation of nocturnal CO2 and N2O soil emissions from changes in surface boundary layer mass storage

NASA Astrophysics Data System (ADS)

Grant, Richard H.; Omonode, Rex A.

2018-04-01

Annual budgets of greenhouse and other trace gases require knowledge of the emissions throughout the year. Unfortunately, emissions into the surface boundary layer during stable, calm nocturnal periods are not measurable using most micrometeorological methods due to non-stationarity and uncoupled flow. However, during nocturnal periods with very light winds, carbon dioxide (CO2) and nitrous oxide (N2O) frequently accumulate near the surface and this mass accumulation can be used to determine emissions. Gas concentrations were measured at four heights (one within and three above canopy) and turbulence was measured at three heights above a mature 2.5 m maize canopy from 23 July to 10 September 2015. Nocturnal CO2 and N2O fluxes from the canopy were determined using the accumulation of mass within a 6.3 m control volume and out the top of the control volume within the nocturnal surface boundary layer. Diffusive fluxes were estimated by flux gradient method. The total accumulative and diffusive fluxes during near-calm nights (friction velocities < 0.05 ms-1) averaged 1.16 µmol m-2 s-1 CO2 and 0.53 nmol m-2 s-1 N2O. Fluxes were also measured using chambers. Daily mean CO2 fluxes determined by the accumulation method were 90 to 130 % of those determined using soil chambers. Daily mean N2O fluxes determined by the accumulation method were 60 to 80 % of that determined using soil chambers. The better signal-to-noise ratios of the chamber method for CO2 over N2O, non-stationary flow, assumed Schmidt numbers, and anemometer tilt were likely contributing reasons for the differences in chambers versus accumulated nocturnal mass flux estimates. Near-surface N2O accumulative flux measurements in more homogeneous regions and with greater depth are needed to confirm the conclusion that mass accumulation can be effectively used to estimate soil emissions during nearly calm nights.

Scaling up carbonyl sulfide (COS) fluxes from leaf and soil to the canopy

NASA Astrophysics Data System (ADS)

Yang, Fulin; Yakir, Dan

2016-04-01

Carbonyl sulfide (COS) with atmospheric concentrations around 500 ppt is an analog of CO2 which can potentially serve as powerful and much needed tracer of photosynthetic CO2 uptake, and global gross primary production (GPP). However, questions remain regarding the application of this approach due to uncertainties in the contributions of different ecosystem components to the canopy scale fluxes of COS. We used laser quantum cascade spectroscopy in combination with soil and branch chambers, and eddy covariance measurements of net ecosystem exchange fluxes of COS and CO2 (NEE) in citrus orchard during the driest summer month to test our ability to integrate the chamber measurements into the ecosystem fluxes. The results indicated that: 1) Soil fluxes showed clear gradient from continuous uptake under the trees in wet soil of up to -4 pmol m-2s-1 (CO2 emission of ~0.5 umol m-2s-1) to emission in dry hot and exposed soil between rows of trees of up to +3 pmol m-2s-1 (CO2 emission of ~11 umol m-2s-1). In all cases a clear correlation between fluxes and soil temperature was observed. 2) At the leaf scale, midday uptake was ~5.5 pmol m-2s-1 (CO2 uptake of ~1.8 umol m-2s-1). Some nighttime COS uptake was observed in the citrus leaves consistent with nocturnal leaf stomatal conductance. Leaf relative uptake (LRU) of COS vs. CO2 was not constant over the diurnal cycle, but showed exponential correlation with photosynthetically active radiation (PAR) during the daytime. 3) At the canopy scale mid-day summer flux reached -12.0 pmol m-2s-1 (NEE ~6 umol m-2s-1) with the diurnal patterns of COS fluxes following those of CO2 fluxes during the daytime, but with small COS uptake fluxes maintained also during the night when significant CO2 emission fluxes were observed. The canopy-scale fluxes always indicated COS uptake, irrespective of the soil emission effects. GPP estimates were consistent with conventional indirect estimates based on NEE and nocturnal measurements. Scaling up from soil and leaf chamber to canopy scale was possible by estimating LAI, and differential consideration of soil surface components (shaded vs. exposed fractions). 4) Diurnal changes in the atmospheric concentrations of COS and CO2 above the canopy showed complex patterns with opposite trends after sunrise that could be explain by the development of the planetary boundary layer 5) COS-based estimate of GPP can be improved by adopting light dependent LRU, around the mean value of ~1.6, and correcting for soil COS fluxes based on soil temperature and canopy cover estimates, and coupled COS/CO2 concentration measurements provide useful information on boundary layer dynamics.

Simulating Carbon cycle and phenology in complex forests using a multi-layer process based ecosystem model; evaluation and use of 3D-CMCC-Forest Ecosystem Model in a deciduous and an evergreen neighboring forests, within the area of Brasschaat (Be)

NASA Astrophysics Data System (ADS)

Marconi, S.; Collalti, A.; Santini, M.; Valentini, R.

2013-12-01

3D-CMCC-Forest Ecosystem Model is a process based model formerly developed for complex forest ecosystems to estimate growth, water and carbon cycles, phenology and competition processes on a daily/monthly time scale. The Model integrates some characteristics of the functional-structural tree models with the robustness of the light use efficiency approach. It treats different heights, ages and species as discrete classes, in competition for light (vertical structure) and space (horizontal structure). The present work evaluates the results of the recently developed daily version of 3D-CMCC-FEM for two neighboring different even aged and mono specific study cases. The former is a heterogeneous Pedunculate oak forest (Quercus robur L. ), the latter a more homogeneous Scot pine forest (Pinus sylvestris L.). The multi-layer approach has been evaluated against a series of simplified versions to determine whether the improved model complexity in canopy structure definition increases its predictive ability. Results show that a more complex structure (three height layers) should be preferable to simulate heterogeneous scenarios (Pedunculate oak stand), where heights distribution within the canopy justify the distinction in dominant, dominated and sub-dominated layers. On the contrary, it seems that using a multi-layer approach for more homogeneous stands (Scot pine stand) may be disadvantageous. Forcing the structure of an homogeneous stand to a multi-layer approach may in fact increase sources of uncertainty. On the other hand forcing complex forests to a mono layer simplified model, may cause an increase in mortality and a reduction in average DBH and Height. Compared with measured CO2 flux data, model results show good ability in estimating carbon sequestration trends, on both a monthly/seasonal and daily time scales. Moreover the model simulates quite well leaf phenology and the combined effects of the two different forest stands on CO2 fluxes.

Flood quantiles scaling with upper soil hydraulic properties for different land uses at catchment scale

NASA Astrophysics Data System (ADS)

Peña, Luis E.; Barrios, Miguel; Francés, Félix

2016-10-01

Changes in land use within a catchment are among the causes of non-stationarity in the flood regime, as they modify the upper soil physical structure and its runoff production capacity. This paper analyzes the relation between the variation of the upper soil hydraulic properties due to changes in land use and its effect on the magnitude of peak flows: (1) incorporating fractal scaling properties to relate the effect of the static storage capacity (the sum of capillary water storage capacity in the root zone, canopy interception and surface puddles) and the upper soil vertical saturated hydraulic conductivity on the flood regime; (2) describing the effect of the spatial organization of the upper soil hydraulic properties at catchment scale; (3) examining the scale properties in the parameters of the Generalized Extreme Value (GEV) probability distribution function, in relation to the upper soil hydraulic properties. This study considered the historical changes of land use in the Combeima River catchment in South America, between 1991 and 2007, using distributed hydrological modeling of daily discharges to describe the hydrological response. Through simulation of land cover scenarios, it was demonstrated that it is possible to quantify the magnitude of peak flows in scenarios of land cover changes through its Wide-Sense Simple Scaling with the upper soil hydraulic properties.

Using Remote Sensing Technologies to Quantify the Effects of Beech Bark Disease on the Structure, Composition, and Function of a Late-Successional Forest

NASA Astrophysics Data System (ADS)

Stuart-Haëntjens, E. J.; Ricart, R. D.; Fahey, R. T.; Fotis, A. T.; Gough, C. M.

2016-12-01

Ecological theory maintains that as forests age, the rate at which carbon (C) is stored declines because C released through organic matter decomposition offsets declining C sequestration in new vegetative growth. Recent observational studies are challenging this long-held hypothesis, with limited evidence suggesting higher-than-expected rates in late-successional forests could be, counterintuitively, tied to canopy structural changes associated with low intensity tree mortality. As forests age, canopy structural complexity may increase when old trees die and form upper canopy gaps that release subcanopy vegetation. This provides one explanation for observations of sustained high production in old forests. Recent studies have found that this increased structural complexity and resource-use efficiency maintain C storage in mid-successional deciduous forests; whether a similar mechanism extends to late-successional forests is unknown. We will present how a slow, moderate disturbance affects the structure and C sequestration of late-successional forests. Our study site is a forest recently infected by Beech Bark Disease (BBD), which will result in the eventual mortality of American beech trees in this late successional forest in Northern Michigan, at the University of Michigan Biological Station. American Beech, Hemlock, Sugar Maple, and White Pine dominate the landscape, with American Beech making up 30% of the canopy trees on average. At the plot scale American Beech is distributed heterogeneously, comprising 1% to 60% of total plot basal area, making it possible to examine the interplay between disturbance severity, canopy structural change, and primary production resilience in this forest. Within each of the 13 plots, species and stem diameter were collected in 1992, 1994, 2014, and 2016, with future remeasurements planned. We will discuss how ground-based lidar coupled with airborne spectral (IR and RGB) imagery are being used to track canopy BBD-related structural changes over time and space, and to link structural changes with late-successional primary production. Our hypothesis is that, up to a presently unknown disturbance threshold, moderate disturbance from BBD sustains primary production in this late successional forest by partially, but not fully, rewinding ecological succession.

Measurement of heat and moisture fluxes at the top of the rain forest during ABLE

NASA Technical Reports Server (NTRS)

Fitzjarrald, David R.

1987-01-01

Observations are presented of turbulent heat, moisture, and momentum transport made at two levels, approximately 5 and 10 m above the Amazon rain forest canopy. Data acquired at 10 Hz included variances and some mixed third moments of vertical velocity, temperature, and humidity. Two features of the data appear to question the displacement height hypothesis: (1) The characteristic dissipation length scale in the near-canopy layer varied between 20 m in stable conditions to approximately 150 m during afternoon convective conditions, generally larger scales than would be expected; and (2) No appreciable difference in dissipation scales was seen at the two observed levels. Observed peaks in vertical velocity-temperature cospectra lead to similar length scale estimates for dominant eddies. Heat budgets on selected days show that frequent periods with negative heat flux concurrent with continuing positive moisture flux occur in early afternoon, and this is believed to indicate the patchy nature of canopy-atmosphere coupling. Vertical velocity skewness was observed to be negative on three successive days and exhibited a sharp positive gradient.

Lower layers in the motor cortex are more effective targets for penetrating microelectrodes in cortical prostheses

NASA Astrophysics Data System (ADS)

Parikh, Hirak; Marzullo, Timothy C.; Kipke, Daryl R.

2009-04-01

Improving cortical prostheses requires the development of recording neural interfaces that are efficient in terms of providing maximal control information with minimal interface complexity. While the typical approaches have targeted neurons in the motor cortex with multiple penetrating shanks, an alternative approach is to determine an efficient distribution of electrode sites within the layers of the cortex with fewer penetrating shanks. The objective of this study was to compare unit activity in the upper and lower layers of the cortex with respect to movement and direction in order to inform the design of penetrating microelectrodes. Four rats were implanted bilaterally with multi-site single-shank silicon microelectrode arrays in the neck/shoulder region of the motor cortex. We simultaneously recorded unit activity across all layers of the motor cortex while the animal was engaged in a movement direction task. Localization of the electrode array within the different layers of the cortex was determined by histology. We denoted units from layers 2 and 3 and units as upper layer units, and units from layers 5 and 6 as lower layer units. Analysis of unit spiking activity demonstrated that both the upper and lower layers encode movement and direction information. Unit responses in either cortical layer of the cortex were not preferentially associated with contralateral or ipsilateral movement. Aggregate analysis (633 neurons) and best session analysis (75 neurons) indicated that units in the lower layers (layers 5, 6) are more likely to encode direction information when compared to units in the upper layers (layers 2, 3) (p< 0.05). These results suggest that electrode sites clustered in the lower layers provide access to more salient control information for cortical neuroprostheses.

Nitrogen Oxides in the Nocturnal Boundary Layer: Chemistry of Nitrous Acid (HONO) and the Nitrate Radical (N03)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jochen Stutz

Summary Chemical processes occurring at night in the lowest part of the urban atmosphere, the so called nocturnal boundary layer (NBL), can influence the composition of the atmosphere during the night as well as the following day. They may impact the budgets of some of the most important pollutants, such as ozone and nitrogen oxides, as well as influence size and composition of particular matter. Few studies have thus far concentrated on the nocturnal chemistry of the urban NBL, most likely due to the strong influence of vertical transport and mixing, which requires the measurement of trace gas profiles insteadmore » of simple point observations. Motivated by our lack of observations and understanding of nocturnal chemistry, the focus of this project was the study of the vertical distribution of trace gases and the altitude dependence of nocturnal chemistry under polluted conditions through field observations and modeling studies. The analysis of three field experiments (TEXAQS, Houston, 2000; Phoenix Sunrise Ozone Experiment, 2001; NAPOX, Boston, 2002), two of which were performed in this project, showed that ozone concentrations typically increase with height in the lowest 150m, while NO2 typically decreases. NO3, the dominant nocturnal radical species, showed much higher concentrations in the upper part of the NBL, and was often not present at the ground. With the help of a one-dimensional chemical transport model, developed in this project, we found that the interaction of ground emissions of NOx and hydrocarbons, together with their vertical transport, is responsible for the vertical profiles. The dominant chemical reactions influencing ozone, NO2 and NO3 are the reaction of ozone and NO3 with freshly emitted NO. Sensitivity studies with our model showed that the magnitude of the trace gas gradients depend both on the emission rates and the vertical stability of the NBL. Observations and model analysis clearly show that nocturnal chemistry in urban areas is altitude dependent. Measurements at one altitude, for example at the ground, where most air quality monitoring stations are located, are not representative for the rest of the NBL. Our model also revealed that radical chemistry is, in general, altitude dependent at night. We distinguish three regions: an unreactive, NO rich, ground layer; an upper, O3 and NO3 dominated layer, and a reactive mixing layer, where RO2 radicals are mixed from aloft with NO from the ground. In this reactive layer an active radical chemistry and elevated OH radical levels can be found. The downward transport of N2O5 and HO2NO2, followed by their thermal decay, was also identified as a radical source in this layer. Our observations also gave insight into the formation of HONO in the NBL. Based on our field experiments we were able to show that the NO2 to HONO conversion was relative humidity dependent. While this fact was well known, we found that it is most likely the uptake of HONO onto surfaces which is R.H. dependent, rather than the NO2 to HONO conversion. This finding led to the proposal of a new NO2 to HONO conversion mechanism, which is based on solid physical chemical principles. Noteworthy is also the observation of enhanced NO2 to HONO conversion during a dust storm event in Phoenix. The final activity in our project investigated the influence of the urban canopy, i.e. building walls and surfaces, on nocturnal chemistry. For the first time the surface area of a city was determined based on a Geographical Information System database of the city of Santa Monica. The surface to volume areas found in this study showed that, in the 2 lower part of the NBL, buildings provide a much larger surface area than the aerosol. In addition, buildings take up a considerable amount of the volume near the ground. The expansion of our model and sensitivity studies based on the Santa Monica data revealed that the surface area of buildings considerably influences HONO levels in urban areas. The volume reduction leads to a decrease of O3 and an increase of NO2 near the ground due to the stronger impact of NO emissions. Our project shows that the urban canopy should be included in future air quality models to better represent nocturnal chemistry. This project has considerably advanced our understanding of the chemistry of the urban nocturnal boundary layer. The results of this project have implications for air quality studies in the urban nocturnal boundary layer. The study has also identified new questions on nocturnal processes, which we will continue to address through other projects.« less

Interface roughness induced asymmetric magnetic property in sputter-deposited Co/CoO/Co exchange coupled trilayers

NASA Astrophysics Data System (ADS)

Wang, J.; Sannomiya, T.; Shi, J.; Nakamura, Y.

2012-04-01

The effect of interface roughness on magnetic properties of exchange coupled polycrystalline Co/CoO(tAF)/Co trilayers has been investigated by varying antiferromagnetic layer (CoO) thickness. It has been found that the upper CoO/Co interface becomes rougher with increasing CoO layer thickness, resulting in stronger exchange bias of the upper interface than the lower one. The interfacial exchange coupling is strengthened by the increase of defect-generated uncompensated antiferromagnetic spins; such spins form coupling with spins in the Co layer at the interface. As a result, the CoO layer thickness dependence of exchange bias is much enhanced for the upper Co layer. The transition from anisotropic magnetoresistance to isotropic magnetoresistance for the top Co layer has also been found. This could be attributed to the defects, probably partial thin oxide layers, between Co grains in the top Co layer that leads a switch from spin-orbit scattering related magnetoresistance to spin-dependent electron scattering dominated magnetoresistance.

Do Reductions in Dry Season Transpiration Allow Shallow Soil Water Uptake to Persist in a Tropical Lower Montane Cloud Forest?

NASA Astrophysics Data System (ADS)

Munoz Villers, L. E.; Holwerda, F.; Alvarado-Barrientos, M. S.; Goldsmith, G. R.; Geissert Kientz, D. R.; González Martínez, T. M.; Dawson, T. E.

2016-12-01

Tropical montane cloud forests (TMCF) are ecosystems particularly sensitive to climate change; however, the effects of warmer and drier conditions on TMCF water cycling remain poorly understood. To investigate the plant functional response to reduced water availability, we conducted a study during the mid to late dry season (2014) in the lower limit (1,325 m asl) of the TMCF belt (1200-2500 m asl) in central Veracruz, Mexico. The temporal variation of transpiration rates of dominant upper canopy and mid-story tree species, depth of water uptake, as well as tree water sources were examined using micrometeorological, sapflow and soil moisture measurements, in combination with data on stable isotope (δ18O and δ2H) composition of rain, tree xylem, soil (bulk and low suction-lysimeter) and stream water. The sapflow data suggest that crown conductances decreased as temperature and vapor pressure deficit increased, and soil moisture decreased from the mid to late dry season. Across all samplings (January 21, April 12 and 26), upper canopy species (Quercus spp.) showed more depleted (negative) isotope values compared to mid-story trees (Carpinus tropicalis). Overall, we found that the evaporated soil water pool was the main source for the trees. Furthermore, our MixSIAR Bayesian mixing model results showed that the depth of tree water uptake changed over the course of the dry season. Unexpectedly, a shift in water uptake from deeper (60-120 cm depth) to shallower soil water (0-30 cm) sources was observed, coinciding with the decreases in transpiration rates towards the end of the dry season. A larger reduction in deep soil water contributions was observed for upper canopy trees (from 70±14 to 22±15%) than for mid-story species (from 10±13 to 7±10%). The use of shallow soil water by trees during the dry season seems consistent with the greater root biomass and higher macronutrient concentrations found in the first 10 cm of the soil profiles. These findings are an important step towards enhancing our understanding about the water movement through this TMCF ecosystem, providing information that may be used for forest protection and management under the increasing climate change pressures.

The role of mesophyll conductance in the economics of nitrogen and water use in photosynthesis.

PubMed

Buckley, Thomas N; Warren, Charles R

2014-02-01

A recent resurgence of interest in formal optimisation theory has begun to improve our understanding of how variations in stomatal conductance and photosynthetic capacity control the response of whole plant photosynthesis and growth to the environment. However, mesophyll conductance exhibits similar variation and has similar impact on photosynthesis as stomatal conductance; yet, the role of mesophyll conductance in the economics of photosynthetic resource use has not been thoroughly explored. In this article, we first briefly summarise the knowledge of how mesophyll conductance varies in relation to environmental factors that also affect stomatal conductance and photosynthetic capacity, and then we use a simple analytical approach to begin to explore how these important controls on photosynthesis should mutually co-vary in a plant canopy in the optimum. Our analysis predicts that when either stomatal or mesophyll conductance is limited by fundamental biophysical constraints in some areas of a canopy, e.g. reduced stomatal conductance in upper canopy leaves due to reduced water potential, the other of the two conductances should increase in those leaves, while photosynthetic capacity should decrease. Our analysis also predicts that if mesophyll conductance depends on nitrogen investment in one or more proteins, then nitrogen investment should shift away from Rubisco and towards mesophyll conductance if hydraulic or other constraints cause chloroplastic CO2 concentration to decline. Thorough exploration of these issues awaits better knowledge of whether and how mesophyll conductance is itself limited by nitrogen investment, and about how these determinants of photosynthetic CO2 supply and demand co-vary among leaves in real plant canopies.

Simultaneous improvement in productivity, water use, and albedo through crop structural modification.

PubMed

Drewry, Darren T; Kumar, Praveen; Long, Stephen P

2014-06-01

Spanning 15% of the global ice-free terrestrial surface, agricultural lands provide an immense and near-term opportunity to address climate change, food, and water security challenges. Through the computationally informed breeding of canopy structural traits away from those of modern cultivars, we show that solutions exist that increase productivity and water use efficiency, while increasing land-surface reflectivity to offset greenhouse gas warming. Plants have evolved to maximize capture of radiation in the upper leaves, thus shading competitors. While important for survival in the wild, this is suboptimal in monoculture crop fields for maximizing productivity and other biogeophysical services. Crop progenitors evolved over the last 25 million years in an atmosphere with less than half the [CO2] projected for 2050. By altering leaf photosynthetic rates, rising [CO2] and temperature may also alter the optimal canopy form. Here using soybean, the world's most important protein crop, as an example we show by applying optimization routines to a micrometeorological leaf canopy model linked to a steady-state model of photosynthesis, that significant gains in production, water use, and reflectivity are possible with no additional demand on resources. By modifying total canopy leaf area, its vertical profile and angular distribution, and shortwave radiation reflectivity, all traits available in most major crop germplasm collections, increases in productivity (7%) are possible with no change in water use or albedo. Alternatively, improvements in water use (13%) or albedo (34%) can likewise be made with no loss of productivity, under Corn Belt climate conditions. © 2014 California Institute of Technology. Government sponsorship acknowledged.

3D Surface Temperature Measurement of Plant Canopies Using Photogrammetry Techniques From A UAV.

NASA Astrophysics Data System (ADS)

Irvine, M.; Lagouarde, J. P.

2017-12-01

Surface temperature of plant canopies and within canopies results from the coupling of radiative and energy exchanges processes which govern the fluxes at the interface soil-plant-atmosphere. As a key parameter, surface temperature permits the estimation of canopy exchanges using processes based modeling methods. However detailed 3D surface temperature measurements or even profile surface temperature measurements are rarely made as they have inherent difficulties. Such measurements would greatly improve multi-level canopy models such as NOAH (Chen and Dudhia 2001) or MuSICA (Ogée and Brunet 2002, Ogée et al 2003) where key surface temperature estimations, at present, are not tested. Additionally, at larger scales, canopy structure greatly influences satellite based surface temperature measurements as the structure impacts the observations which are intrinsically made at varying satellite viewing angles and solar heights. In order to account for these differences, again accurate modeling is required such as through the above mentioned multi-layer models or with several source type models such as SCOPE (Van der Tol 2009) in order to standardize observations. As before, in order to validate these models, detailed field observations are required. With the need for detailed surface temperature observations in mind we have planned a series of experiments over non-dense plant canopies to investigate the use of photogrammetry techniques. Photogrammetry is normally used for visible wavelengths to produce 3D images using cloud point reconstruction of aerial images (for example Dandois and Ellis, 2010, 2013 over a forest). From these cloud point models it should be possible to establish 3D plant surface temperature images when using thermal infrared array sensors. In order to do this our experiments are based on the use of a thermal Infrared camera embarked on a UAV. We adapt standard photogrammetry to account for limits imposed by thermal imaginary, especially the low image resolution compared with standard RGB sensors. At the session B081, we intend to present first results of our thermal photogrammetric experiments with 3D surface temperature plots in order to discuss and adapt our methods to the modelling community's needs.

Four years of ozone measurements in the Central Amazon - Absorption mechanisms and reactions within the rainforest

NASA Astrophysics Data System (ADS)

Wolff, Stefan; Ganzeveld, Laurens; Tsokankunku, Anywhere; Saturno, Jorge; Souza, Rodrigo; Trebs, Ivonne; Sörgel, Matthias

2017-04-01

The ATTO (Amazon Tall Tower Observatory) site (02°08'38.8''S, 58°59'59.5''W) is located in the remote Amazon rainforest, allowing atmospheric and forest studies away from nearby anthropogenic emission sources. Starting with continuous measurements of vertical mixing ratio profiles of H2O, CO2 and O3 in April 2012 at 8 heights between 0.05 m and 80 m above ground, the longest continuous record of near surface O3 in the Amazon rainforest was established. Black carbon (BC), CO and micrometeorological measurements are available for the same period. During intensive campaigns, NOx was measured as well using the same profile system, and therefore several month of parallel NOx measurements are available. This data allows the analyses of diverse patterns regarding emission, deposition, turbulence and chemical reactions of trace gases within and above the rainforest for several rainy and dry seasons. The remote Amazon generally serves as a sink for O3 which is mainly deposited to the canopy. The deposition depends to a large extent on the aperture of the leaf stomata, which is correlated to temperature, humidity, solar radiation and water availability. Comparing these parameters with the in-canopy and above canopy gradients of O3, considering the turbulent conditions and further chemical reactions of O3 with NOx and VOC molecules, we estimated the role of the forest for the removal of ozone from the atmosphere under different meteorological conditions. We applied the Multi-Layer Canopy Chemical Exchange Model - MLC-CHEM to support the analysis of the observed profiles of NOx and O3. Under pristine conditions, the forest soil is the major source for NO emissions, which are directly reacting with O3 molecules, affecting the O3 gradient within the sub-canopy. We have analyzed differences between model and measurements in sub-canopy NO and O3 mixing ratios by the application of different NO soil emission scenarios and by the performance of several sensitivity analyses to investigate the deposition of O3 and NO2 in the canopy.

Organised Motion in a Tall Spruce Canopy: Temporal Scales, Structure Spacing and Terrain Effects

NASA Astrophysics Data System (ADS)

Thomas, Christoph; Foken, Thomas

2007-01-01

This study investigates the organised motion near the canopy-atmosphere interface of a moderately dense spruce forest in heterogeneous, complex terrain. Wind direction is used to assess differences in topography and surface properties. Observations were obtained at several heights above and within the canopy using sonic anemometers and fast-response gas analysers over the course of several weeks. Analysed variables include the three-dimensional wind vector, the sonic temperature, and the concentration of carbon dioxide. Wavelet analysis was used to extract the organised motion from time series and to derive its temporal scales. Spectral Fourier analysis was deployed to compute power spectra and phase spectra. Profiles of temporal scales of ramp-like coherent structures in the vertical and longitudinal wind components showed a reversed variation with height and were of similar size within the canopy. Temporal scales of scalar fields were comparable to those of the longitudinal wind component suggesting that the lateral scalar transport dominates. The existence of a 1 power law in the longitudinal power spectra was confirmed for a few cases only, with a majority showing a clear 5/3 decay. The variation of effective scales of organised motion in the longitudinal velocity and temperature were found to vary with atmospheric stability, suggesting that both Kelvin-Helmholtz instabilities and attached eddies dominate the flow with increasing convectional forcing. The canopy mixing-layer analogy was observed to be applicable for ramp-like coherent structures in the vertical wind component for selected wind directions only. Departures from the prediction of m = Λ w L {/s -1} = 8 10 (where Λ w is the streamwise spacing of coherent structures in the vertical wind w and L s is a canopy shear length scale) were caused by smaller shear length scales associated with large-scale changes in the terrain as well as the vertical structure of the canopy. The occurrence of linear gravity waves was related to a rise in local topography and can therefore be referred to as mountain-type gravity waves. Temporal scales of wave motion and ramp-like coherent structures were observed to be comparable.

Primary and Secondary Controls on Measurements of Forest Height Using Large-Footprint Lidar at the Hubbard Brook LTER

NASA Technical Reports Server (NTRS)

Knox, Robert G.; Blair, J. Bryan; Schwarz, Paul A.; Hofton, Michelle A.; Dubayah, Ralph; Smith, David E. (Technical Monitor)

2000-01-01

On September 26, 1999, we mapped canopy structure over 90% of the Hubbard Brook Experimental Forest in White Mountain National Forest, New Hampshire, using the Laser Vegetation Imaging Sensor (LVIS). This airborne instrument was configured to emulate data expected from the Vegetation Canopy Lidar (VCL) space mission. We compared above ground heights of the tallest surfaces detected by lidar with average forest canopy heights estimated from tree-based measurements in or near 346 0.05 ha plots (made in autumn of 1997 and 1998). Vegetation heights had by far the predominant influence on lidar top heights, but with this large data set we were able to measure two significant secondary effects: those of steepness or slope of the underlying terrain and of tree crown form. The size of the slope effect was intermediate between that expected from models of homogeneous canopy layers and for solitary tree crowns. The first detected surfaces were also proportionately taller for plots with more basal area in broad leaved northern hardwoods than for mostly coniferous plots. We expected this because of the contrast between the shapes of cumulative distributions of surface area for elliptical or hemi-elliptical tree crowns and those for conical crowns. Correcting for these secondary effects, when appropriate data are available for calibration, may improve vegetation structure estimates in regional studies using VCL or similar lidar data sources.

On the contribution of atmospheric moisture to dew formation

NASA Astrophysics Data System (ADS)

Garratt, J. R.; Segal, M.

1988-09-01

The relative contributions of dewfall (a flux of water vapour from air to surface) and distillation (a flux of water vapour from soil to canopy) to dew formation on closed canopy and bare soil surfaces are assessed, and the dependence of dew amount upon wind speed, absolute temperature, atmospheric stability, relative humidity, soil characteristics and cloudiness, all of which are significant factors, is evaluated. Some of these evaluations provide refinements to similar ones given in Monteith (1961). High dewfall rates are usually ≲0.06 mm hr-1 over canopy or bare soil, though upon a canopy under soil-saturated and air-saturated conditions, rates of dew formation may reach 0.07 0.09 mm hr-1 with contributions from distillation. Various sets of observations are reanalyzed to illustrate the importance of the horizontal advection of moisture in the nocturnal boundary layer (NBL) to observed high rates of dew formation arising from the atmospheric contribution of water vapour (dewfall). These locally observed high dewfall rates must be the result of small-scale or mesoscale horizontal advection of moisture in the NBL, since the humidity changes within the typically shallow NBL required to balance the loss of water at the surface are not observed. Over extensive areas of uniform surface (horizontal scales ≫10 km), such continuously high dewfall rates could only be balanced by a local supply of atmospheric moisture since advection of moisture would necessarily be small.

Wintertime ozone fluxes and profiles above a subalpine spruce-fir forest

Treesearch

Karl Zeller

2000-01-01

High rural concentrations of ozone (O3) are thought to be stratospheric in origin, advected from upwind urban sources, or photochemically generated locally by natural trace gas emissions. Ozone is known to be transported vertically downward from the above-canopy atmospheric surface layer and destroyed within stomata or on other biological and mineral surfaces. However...

Suppression of ectomycorrhizae on canopy tree seedlings in Rhododendron maximum (Eriqceae) thickets in the southern Appalachians

Treesearch

John F. Walker; Orson K. Miller; Tom Lei; Shawn Semones; Erik Nilsen; B.D. Clinton

1999-01-01

Thickets of Rhododendron maximum (Ericaceae) (Rm) is the southern Appalachians severely limit regeneration of hardwood and coniferous seedlings. Experimental blocks were established in and out of Rm thickets in a mature, mixed hardwood/conifer forest in Macon County, N.C. Litter and organic layer substrates were removed, cornposited and...

A Crown Cover Chart for Oak Savannas

Treesearch

Jay Law; Paul Johnson; Gary Houf

1994-01-01

Although oak savannas have been defined in many ways, they are characterized by scattered trees, largely comprised of oaks, and a sparse ground layer rich in grasses and forbs (Haney and Apfelbaum 1990). Nuzzo (1986, p. 11) more specifically defined oak savannas as plant communities "...dominated by oaks having between 10 and 80 percent canopy, with or without a...

COST 728 Project Report: Urbanization of Meteorological and Air Quality Models - Chapter 5 - Model Urbanization Strategy: Summaries, Recommendations and Requirements

EPA Science Inventory

The urban canopy (UC), the layer of the atmosphere between the ground and the top of the highest buildings, is the region where people live and human activities take place. Because of this importance (e.g., human health, preservation of buildings) significant efforts have been d...

Terrain Classification Using Multi-Wavelength Lidar Data

DTIC Science & Technology

2015-09-01

Figure 9. Pseudo- NDVI of three layers within the vertical structure of the forest. (Top) First return from the LiDAR instrument, including the ground...in NDVI throughout the vertical canopy. ........................................................17 Figure 10. Optech Titan operating wavelengths...and Ranging LMS LiDAR Mapping Suite ML Maximum Likelihood NIR Near Infrared N-D VIS n-Dimensional Visualizer NDVI Normalized Difference

The Effects of Fine-scale Soil Moisture and Canopy Heterogeneities on Energy and Soil Water Fluxes in a Temperate Mixed Deciduous Forest

NASA Astrophysics Data System (ADS)

He, L.; Ivanov, V. Y.; Bohrer, G.; Maurer, K.; Vogel, C. S.; Moghaddam, M.

2011-12-01

Vegetation is heterogeneous at different scales, influencing spatially variable energy and water exchanges between land-surface and atmosphere. Current land surface parameterizations of large-scale models consider spatial variability at a scale of a few kilometers and treat vegetation cover as aggregated patches with uniform properties. However, the coupling mechanisms between fine-scale soil moisture, vegetation, and energy fluxes such as evapotranspiration are strongly nonlinear; the aggregation of surface variations may produce biased energy fluxes. This study aims to improve the understanding of the scale impact in atmosphere-biosphere-hydrosphere interactions, which affects predictive capabilities of land surface models. The study uses a high-resolution, physically-based ecohydrological model tRIBS + VEGGIE as a data integration tool to upscale the heterogeneity of canopy distribution resolved at a few meters to the watershed scale. The study was carried out for a spatially heterogeneous, temperate mixed forest environment of Northern Michigan located near the University of Michigan Biological Station (UMBS). Energy and soil water dynamics were simulated at the tree-canopy resolution in the horizontal plane for a small domain (~2 sq. km) located within a footprint of the AmeriFlux tower. A variety of observational data were used to constrain and confirm the model, including a 3-m profile continuous soil moisture dataset and energy flux data (measured at the AmeriFlux tower footprint). A scenario with a spatially uniform canopy, corresponding to the commonly used 'big-leaf' scheme in land surface parameterizations was used to infer the effects of coarse-scale averaging. To gain insights on how heterogeneous canopy and soil moisture interact and contribute to the domain-averaged transpiration, several scenarios of tree-scale leaf area and soil moisture spatial variability were designed. Specifically, for the same mean states, the scenarios of variability of canopy biomass account for the spatial distribution of photosynthesis (and thus the stomatal resistance), the aerodynamic and leaf boundary layer resistances as well as the differential radiation forcing due to tall tree exposure and lateral shading of short trees. The numerical experiments show that by transpiring spatially varying amounts of water, heterogeneous canopies adjust the spatial soil water state to the scaled inverse of the canopy biomass regardless of the initial moisture state. Such a spatial distribution can be further wiped out because of the differential water stress. The aggregation of canopy-scale atmosphere-biosphere-hydrosphere interactions demonstrates non-linear relationship between soil moisture and evapotranspiration, influencing domain-averaged energy fluxes.

Seagrass Parameter Affect the Fish Assemblages in Karimunjawa Archipelago

NASA Astrophysics Data System (ADS)

Sri Susilo, Endang; Nugroho Sugianto, Denny; Munasik; Nirwani; Adhi Suryono, Chrisna

2018-02-01

Seagrass beds promote high species diversity, abundance and biomass, and become important habitats for some economically important fishes. Plants of seagrasses result in structurally highly complex habitats and offering feeding grounds, shelter from predation as well as nursery areas for diverse fish assemblages. However, research on fish communities in Southeast Asian seagrass bed is rarely conducted. In the present study fish assemblages in seagrass beds with different parameters (cover, diversity and similarity indices, domination) was investigated in the Karimunjawa Islands, Indonesia. The purpose of this study were to assess whether fish assemblages differ concerning on the abundance and the species number. This study was conducted on the seagrass bed on Karimunjawa Islands in Java Sea, particularly in the water of Menjangan Besar and Menjangan Kecil Island. Line-quadrant transect was used to assess seagrass data, while the occurrence and individual number of fish harboured in the selected seagrass bed was counted by using underwater visual census in the stationary point count transects. Seagrass cover in Menjangan Kecil Island (41%) with various canopy included both upper and lower canopy was considerable higher than those in Menjangan Besar Island (5%). Fish diversity, species composition and abundance are considerably different between the two study sites. This study revealed that seagrass density or cover and canopy structure affected the fish abundance and species number harboured.

Effects of acidic deposition and soil acidification on sugar maple trees in the Adirondack Mountains, New York.

PubMed

Sullivan, T J; Lawrence, G B; Bailey, S W; McDonnell, T C; Beier, C M; Weathers, K C; McPherson, G T; Bishop, D A

2013-11-19

We documented the effects of acidic atmospheric deposition and soil acidification on the canopy health, basal area increment, and regeneration of sugar maple (SM) trees across the Adirondack region of New York State, in the northeastern United States, where SM are plentiful but not well studied and where widespread depletion of soil calcium (Ca) has been documented. Sugar maple is a dominant canopy species in the Adirondack Mountain ecoregion, and it has a high demand for Ca. Trees in this region growing on soils with poor acid-base chemistry (low exchangeable Ca and % base saturation [BS]) that receive relatively high levels of atmospheric sulfur and nitrogen deposition exhibited a near absence of SM seedling regeneration and lower crown vigor compared with study plots with relatively high exchangeable Ca and BS and lower levels of acidic deposition. Basal area increment averaged over the 20th century was correlated (p < 0.1) with acid-base chemistry of the Oa, A, and upper B soil horizons. A lack of Adirondack SM regeneration, reduced canopy condition, and possibly decreased basal area growth over recent decades are associated with low concentrations of nutrient base cations in this region that has undergone soil Ca depletion from acidic deposition.

Effects of acidic deposition and soil acidification on sugar maple trees in the Adirondack Mountains, New York

USGS Publications Warehouse

Sullivan, Timothy J.; Lawrence, Gregory B.; Bailey, Scott W.; McDonnell, Todd C.; Beier, Colin M.; Weathers, K.C.; McPherson, G.T.; Bishop, Daniel A.

2013-01-01

We documented the effects of acidic atmospheric deposition and soil acidification on the canopy health, basal area increment, and regeneration of sugar maple (SM) trees across the Adirondack region of New York State, in the northeastern United States, where SM are plentiful but not well studied and where widespread depletion of soil calcium (Ca) has been documented. Sugar maple is a dominant canopy species in the Adirondack Mountain ecoregion, and it has a high demand for Ca. Trees in this region growing on soils with poor acid–base chemistry (low exchangeable Ca and % base saturation [BS]) that receive relatively high levels of atmospheric sulfur and nitrogen deposition exhibited a near absence of SM seedling regeneration and lower crown vigor compared with study plots with relatively high exchangeable Ca and BS and lower levels of acidic deposition. Basal area increment averaged over the 20th century was correlated (p < 0.1) with acid–base chemistry of the Oa, A, and upper B soil horizons. A lack of Adirondack SM regeneration, reduced canopy condition, and possibly decreased basal area growth over recent decades are associated with low concentrations of nutrient base cations in this region that has undergone soil Ca depletion from acidic deposition.

Validation of Simplified Urban-Canopy Aerodynamic Parametrizations Using a Numerical Simulation of an Actual Downtown Area

NASA Astrophysics Data System (ADS)

Ramirez, N.; Afshari, Afshin; Norford, L.

2018-07-01

A steady-state Reynolds-averaged Navier-Stoke computational fluid dynamics (CFD) investigation of boundary-layer flow over a major portion of downtown Abu Dhabi is conducted. The results are used to derive the shear stress and characterize the logarithmic region for eight sub-domains, where the sub-domains overlap and are overlaid in the streamwise direction. They are characterized by a high frontal area index initially, which decreases significantly beyond the fifth sub-domain. The plan area index is relatively stable throughout the domain. For each sub-domain, the estimated local roughness length and displacement height derived from CFD results are compared to prevalent empirical formulations. We further validate and tune a mixing-length model proposed by Coceal and Belcher (Q J R Meteorol Soc 130:1349-1372, 2004). Finally, the in-canopy wind-speed attenuation is analysed as a function of fetch. It is shown that, while there is some room for improvement in Macdonald's empirical formulations (Boundary-Layer Meteorol 97:25-45, 2000), Coceal and Belcher's mixing model in combination with the resolution method of Di Sabatino et al. (Boundary-Layer Meteorol 127:131-151, 2008) can provide a robust estimation of the average wind speed in the logarithmic region. Within the roughness sublayer, a properly parametrized Cionco exponential model is shown to be quite accurate.

On the spatial coherence of temperature within and above a vineyard under drainage conditions

NASA Astrophysics Data System (ADS)

Everard, K.; Giometto, M. G.; Christen, A.; Oldroyd, H. J.; Parlange, M. B.

2017-12-01

We show that turbulent exchange within vineyards under nighttime drainage conditions is controlled by large-scale coherent structures arising from a mixing-layer type instability at the canopy top, h. A combination of measurements and large-eddy simulations (LESs) are here used to characterize the onset and development of such structures as a function of the approaching wind angle over an organized canopy during drainage flows. Measurements were carried out over a west-facing 7° vineyard slope near Oliver, BC, Canada in the Okanagan Valley between July 5 and July 22, 2016. The vineyard canopy had an average height of h = 2.3 m, with parallel rows oriented in the local downslope direction (i.e. east-west). The set-up consisted of an array of five vertically arranged ultrasonic anemometers at z/h = 0.19, 0.39, 0.65, 1.02, and 2.06, and a 2-D grid of 40 fine-wire thermocouples arranged at the same heights as the ultrasonic anemometer array on 8 separate masts extending in the upslope direction at locations up to x/h = 13.91 from the flux tower. To complement observations, pressure-driven open-channel flow LESs are performed over a regular domain where vegetation is accounted for via a space dependent drag force. The drainage flow regime is emulated via a tuned pressure-gradient forcing, and different approaching wind angles are considered. Linear stability analyses show that the most unstable mode at the canopy top strongly depends on the approaching wind angle. Space-lagged correlations from measurements show that the lifetime of such eddies within the canopy also depends on the approaching wind direction, with longer lifetimes observed when wind angles are directed along the vine-rows. LESs are compared with measured quantities to ensure matching, and then used to investigate in detail the influence of the above-canopy wind vectors on eddy lifetimes. The impact of the observed coherent structures on momentum and heat exchange coefficients are also discussed.

Influence of Land Cover Heterogeneity, Land-Use Change and Management on the Regional Carbon Cycle in the Upper Midwest USA as Evaluated by High-Density Observations and a Dynamic Ecosystem Model

NASA Astrophysics Data System (ADS)

Desai, A. R.; Bolstad, P. V.; Moorcroft, P. R.; Davis, K. J.

2005-12-01

The interplay between land use change, forest management and land cover variability complicates the ability to characterize regional scale (10-1000 km) exchange of carbon dioxide between the land surface and atmosphere in heterogeneous landscapes. An attempt was made to observe and model these factors and their influence on the regional carbon cycle across the upper Midwest USA. A high density of eddy-covariance carbon flux, micrometeorology, carbon dioxide mixing ratio, stand-scale biometry and canopy component flux observations have been occurring in this area as part of the Chequamegon Ecosystem-Atmosphere Study. Observations limited to sampling only dominant stands and coarse-resolution biogeochemical models limited to biome-scale parameterization neither accurately capture the variability of carbon fluxes measured by the network of eddy covariance towers nor match the regional-scale carbon flux inferred from very tall tower eddy covariance measurements and multi-site upscaling. Analysis of plot level biometric data, U.S. Forest Service Forest Inventory Analysis data and high-resolution land cover data around the tall tower revealed significant variations in vegetation type, stand age, canopy stocking and structure. Wetlands, clearcuts and recent natural disturbances occur in characteristic small non-uniformly distributed patches that aggregate to form more than 30% of the landscape. The Ecosystem Demography model, a dynamic ecosystem model that incorporates vegetation heterogeneity, canopy structure, stand age, disturbance, land use change and forest management, was parameterized with regional biometric data and meteorology, historical records of land management and high-resolution satellite land cover maps. The model will be used to examine the significance of past land use change, natural disturbance history and current forest management in explaining landscape structure and regional carbon fluxes observed in the region today.

Hydraulic redistribution in a Mediterranean wild olive-pasture ecosystem: A key to tree survival and a limit to tree-patch size.

NASA Astrophysics Data System (ADS)

Curreli, Matteo; Montaldo, Nicola; Oren, Ram

2017-04-01

In water-limited environments, such as certain Mediterranean ecosystems, trees may survive prolonged droughts by uptake of water by dimorphic root system: deep roots, growing vertically, and shallower lateral roots, extending beyond the crown projection of tree clumps into zones of seasonal vegetative cover. In such ecosystems, therefore, the balance between soil water under tree canopy versus that in treeless patches plays a crucial role on sustaining tree physiological performance and surface water fluxes during drought periods. The study has been performed at the Orroli site, Sardinia (Italy). The landscape is covered by patchy vegetation: wild olives trees in clumps, herbaceous species, drying to bare soil in late spring. The climate is Mediterranean maritime with long droughts from May to October, and an historical mean yearly rain of about 670 mm concentrated in the autumn and winter months. Soil depth varies from 10 to 50 cm, with underlying fractured rocky layer of basalt. From 2003, a 10 meters micrometeorological tower equipped with eddy-covariance system has been used for measuring water and energy surface fluxes, as well as key state variables (e.g. leaf and soil skin temperature, radiations, air humidity and wind velocity). Soil moisture was measured with five soil water reflectometers (two below the olive canopy and three in patches with pasture vegetation alternating with bare soil in the dry season). Early analyses show that wild olive continue to transpire even as the soil dries and the pasture desiccates. In 2015, to estimate plant water use and in the context of soil water dynamic, 33 Granier-type thermal dissipation probes were installed for estimating sap flow in stems of wild olives trees, 40 cm aboveground, in representative trees over the eddy-covariance foot-print. The combined data of sap flow, soil water content, and eddy covariance, revealed hydraulic redistribution system through the plant and the soil at different layers, allowing to quantify the reliance of the system on different horizontally and vertically differentiated soil compartments. Results shows that during light hours, until transpiration decreases in midday, shallow roots uptake deplete the water content in the upper layer. As transpiration decreases, hydraulically redistributed water provides for both transpiration of wild olives and recharge of shallow soil layers. This buffering, attained by long recharge time of shallow soil, allow woody vegetation to remain physiologically active during very dry conditions. The hydraulically redistributed water is the main source of water for evapotranspiration in the dry summer, and its relevance increases with decreasing water availability. Thus, the spatial coverage and distribution of tree clumps is regulated by the soil water available in the inter-tree clump areas, suggesting that, if Mediterranean areas dry as predicted by IPCC, the proportion of an area occupied by tree clumps will shrink in the future, with predictable consequences to ecosystem services.

Stand and individual tree growth of mature red oak after crop tree management in southern New England: 5-year results

Treesearch

Jeffrey S. Ward

2011-01-01

In winter 2003-04, four oak management study areas were established in Connecticut. Each study area had three 0.62-acre treatment plots: B-level thinning, crop tree, and unmanaged. Each plot was located within a 3- to 5-acre area with similar treatment. The mature red oak sawtimber stands had no prior management and were 80 to 112 years old; upper canopy oaks averaged...

Morphological evolution in dewetting polystyrene/polyhedral oligomeric silsesquioxane thin film bilayers.

PubMed

Paul, Rituparna; Karabiyik, Ufuk; Swift, Michael C; Hottle, John R; Esker, Alan R

2008-05-06

Morphological evolution in dewetting thin film bilayers of polystyrene (PS) and a polyhedral oligomeric silsesquioxane (POSS), trisilanolphenyl-POSS (TPP), was studied as a function of annealing temperature and annealing time. The results demonstrate unique dewetting morphologies in PS/TPP bilayers at elevated temperatures that are significantly different from those typically observed in dewetting polymer/polymer bilayers. During temperature ramp studies by optical microscopy (OM) in the reflection mode, PS/TPP bilayers form cracks with a weak optical contrast at approximately 130 degrees C. The crack formation is attributed to tensile stresses within the upper TPP layer. The weak optical contrast of the cracks observed in the bilayers for annealing temperatures below approximately 160 degrees C is consistent with the cracking and dewetting of only the upper TPP layer from the underlying PS layer. The optical contrast of the morphological features is significantly enhanced at annealing temperatures of >160 degrees C. This observation suggests dewetting of both the upper TPP and the lower PS layers that results in the exposure of the silicon substrate. Upon annealing the PS/TPP bilayers at 200 degrees C in a temperature jump experiment, the upper TPP layer undergoes instantaneous cracking as observed by OM. These cracks in the upper TPP layer serve as nucleation sites for rapid dewetting and aggregation of the TPP layer, as revealed by OM and atomic force microscopy (AFM). X-ray photoelectron spectroscopy (XPS) results indicated that dewetting of the lower PS layer ensued for annealing times >5 min and progressed up to 90 min. For annealing times >90 min, OM, AFM, and XPS results revealed complete dewetting of both the layers with the formation of TPP encapsulated PS droplets.

Cultivar architecture modulates spore dispersal by rain splash: A new perspective to reduce disease progression in cultivar mixtures.

PubMed

Vidal, Tiphaine; Lusley, Pauline; Leconte, Marc; de Vallavieille-Pope, Claude; Huber, Laurent; Saint-Jean, Sébastien

2017-01-01

Cultivar mixtures can be used to improve the sustainability of disease management within farming systems by growing cultivars that differ in their disease resistance level in the same field. The impact of canopy aerial architecture on rain-splash dispersal could amplify disease reduction within mixtures. We designed a controlled conditions experiment to study single splash-dispersal events and their consequences for disease. We quantified this impact through the spore interception capacities of the component cultivars of a mixture. Two wheat cultivars, differing in their aerial architecture (mainly leaf area density) and resistance to Septoria tritici blotch, were used to constitute pure stands and mixtures with 75% of resistant plants that accounted for 80% of the canopy leaf area. Canopies composed of 3 rows of plants were exposed to standardized spore fluxes produced by splashing calibrated rain drops on a linear source of inoculum. Disease propagation was measured through spore fluxes and several disease indicators. Leaf susceptibility was higher for upper than for lower leaves. Dense canopies intercepted more spores and mainly limited horizontal spore transfer to the first two rows. The presence of the resistant and dense cultivar made the mixed canopy denser than the susceptible pure stand. No disease symptoms were observed on susceptible plants of the second and third rows in the cultivar mixture, suggesting that the number of spores intercepted by these plants was too low to cause disease symptoms. Both lesion area and disease conditional severity were significantly reduced on susceptible plants within mixtures on the first row beside the inoculum source. Those reductions on one single-splash dispersal event, should be amplified after several cycle over the full epidemic season. Control of splash-dispersed diseases within mixtures could therefore be improved by a careful choice of cultivars taking into consideration both resistance and architecture.

Cultivar architecture modulates spore dispersal by rain splash: A new perspective to reduce disease progression in cultivar mixtures

PubMed Central

Vidal, Tiphaine; Lusley, Pauline; Leconte, Marc; de Vallavieille-Pope, Claude; Huber, Laurent

2017-01-01

Cultivar mixtures can be used to improve the sustainability of disease management within farming systems by growing cultivars that differ in their disease resistance level in the same field. The impact of canopy aerial architecture on rain-splash dispersal could amplify disease reduction within mixtures. We designed a controlled conditions experiment to study single splash-dispersal events and their consequences for disease. We quantified this impact through the spore interception capacities of the component cultivars of a mixture. Two wheat cultivars, differing in their aerial architecture (mainly leaf area density) and resistance to Septoria tritici blotch, were used to constitute pure stands and mixtures with 75% of resistant plants that accounted for 80% of the canopy leaf area. Canopies composed of 3 rows of plants were exposed to standardized spore fluxes produced by splashing calibrated rain drops on a linear source of inoculum. Disease propagation was measured through spore fluxes and several disease indicators. Leaf susceptibility was higher for upper than for lower leaves. Dense canopies intercepted more spores and mainly limited horizontal spore transfer to the first two rows. The presence of the resistant and dense cultivar made the mixed canopy denser than the susceptible pure stand. No disease symptoms were observed on susceptible plants of the second and third rows in the cultivar mixture, suggesting that the number of spores intercepted by these plants was too low to cause disease symptoms. Both lesion area and disease conditional severity were significantly reduced on susceptible plants within mixtures on the first row beside the inoculum source. Those reductions on one single-splash dispersal event, should be amplified after several cycle over the full epidemic season. Control of splash-dispersed diseases within mixtures could therefore be improved by a careful choice of cultivars taking into consideration both resistance and architecture. PMID:29140990

Study on Light Interception and Biomass Production of Different Cotton Cultivars

PubMed Central

Mao, Shuchun; Han, Yingchun; Feng, Lu; Wang, Guoping; Yang, Beifang; Zhi, Xiaoyu; Fan, Zhengyi; Lei, Yaping; Du, Wenli; Li, Yabing

2016-01-01

Identifying the characteristics of light interception and utilization is of great significance for improving the potential photosynthetic activity of plants. The present research investigates the differences in absorbing and converting photosynthetically active radiation (PAR) among various cotton cultivars. Field experiments were conducted in 2012, 2013 and 2014 in Anyang, Henan, China. Ten cultivars with different maturity and plant architectures were planted at a density of 60,000 plants ha-1 in randomized blocks, with three replicates. The spatial distribution of light in canopy was measured and quantified with a geo-statistical method, according to which the cumulative amount of intercepted radiation was calculated by Simpson 3/8 rules. Finally, light interception was analyzed in association with the biomass accumulation of different cultivars. The key results were: (1) late-maturing varieties with an incompact plant architecture captured more solar radiation throughout the whole growth period than middle varieties with columnar architecture and even more than early varieties with compact architecture, and they produced more biomass; (2) the highest PAR interception ratio and the maximum biomass accumulation rate occurred during the blossoming and boll-forming stage, when leaf area index (LAI) reached its peak; (3) the distribution within the canopy presented a significant spatial heterogeneity, and at late growing stage, the PAR was mainly intercepted by upper canopies in incompact-type plant communities, but was more homogeneous in columnar-type plants; however, the majority of radiation was transmitted through the canopy in compact-type colonies; (4) there was not a consistent variation relationship between the cumulative intercepted PAR (iPAR) and biomass among these cultivars over the three years of the study. Based on these results, we attempted to clarify the distinction in light spatial distribution within different canopies and the patterns of PAR interception in diverse cotton cultivars with different hereditary characters, thereby providing a significant basis for researchers to select cultivars with appropriate growth period and optimal plant architecture for improvement of light interception and utilization. PMID:27227675

Impact of climate warming on upper layer of the Bering Sea

NASA Astrophysics Data System (ADS)

Lee, Hyun-Chul; Delworth, Thomas L.; Rosati, Anthony; Zhang, Rong; Anderson, Whit G.; Zeng, Fanrong; Stock, Charles A.; Gnanadesikan, Anand; Dixon, Keith W.; Griffies, Stephen M.

2013-01-01

The impact of climate warming on the upper layer of the Bering Sea is investigated by using a high-resolution coupled global climate model. The model is forced by increasing atmospheric CO2 at a rate of 1% per year until CO2 reaches double its initial value (after 70 years), after which it is held constant. In response to this forcing, the upper layer of the Bering Sea warms by about 2°C in the southeastern shelf and by a little more than 1°C in the western basin. The wintertime ventilation to the permanent thermocline weakens in the western Bering Sea. After CO2 doubling, the southeastern shelf of the Bering Sea becomes almost ice-free in March, and the stratification of the upper layer strengthens in May and June. Changes of physical condition due to the climate warming would impact the pre-condition of spring bio-productivity in the southeastern shelf.

Citizen's dosimeter

DOEpatents

Klemic, Gladys [Naperville, IL; Bailey, Paul [Chicago, IL; Breheny, Cecilia [Yonkers, NY

2008-09-02

The present invention relates to a citizen's dosimeter. More specifically, the invention relates to a small, portable, personal dosimetry device designed to be used in the wake of a event involving a Radiological Dispersal Device (RDD), Improvised Nuclear Device (IND), or other event resulting in the contamination of large area with radioactive material or where on site personal dosimetry is required. The card sized dosimeter generally comprises: a lower card layer, the lower card body having an inner and outer side; a upper card layer, the layer card having an inner and outer side; an optically stimulated luminescent material (OSLM), wherein the OSLM is sandwiched between the inner side of the lower card layer and the inner side of the upper card layer during dosimeter radiation recording, a shutter means for exposing at least one side of the OSLM for dosimeter readout; and an energy compensation filter attached to the outer sides of the lower and upper card layers.

Dementia of frontal lobe type and motor neuron disease. A Golgi study of the frontal cortex.

PubMed Central

Ferrer, I; Roig, C; Espino, A; Peiro, G; Matias Guiu, X

1991-01-01

Neuropathological findings in a 38 year old patient with dementia of frontal lobe type and motor neuron disease included pyramidal tracts, myelin pallor and neuron loss, gliosis and chromatolysis in the hypoglossal nucleus, together with frontal atrophy, neuron loss, gliosis and spongiosis in the upper cortical layers of the frontal (and temporal) lobes. Most remaining pyramidal and non-pyramidal neurons (multipolar, bitufted and bipolar cells) in the upper layers (layers II and III) of the frontal cortex (area B) had reduced dendritic arbors, proximal dendritic varicosities and amputation of dendrites as revealed in optimally stained rapid Golgi sections. Pyramidal cells in these layers also showed depletion of dendritic spines. Neurons in the inner layers were preserved. Loss of receptive surfaces in neurons of the upper cortical layers in the frontal cortex are indicative of neuronal disconnection, and are "hidden" contributory morphological substrates for the development of dementia. Images PMID:1744652