Photon transitions in Upsilon(2S) and Upsilon(3S) decays.

PubMed

Artuso, M; Boulahouache, C; Blusk, S; Butt, J; Dambasuren, E; Dorjkhaidav, O; Li, J; Menaa, N; Mountain, R; Muramatsu, H; Nandakumar, R; Redjimi, R; Sia, R; Skwarnicki, T; Stone, S; Wang, J C; Zhang, K; Csorna, S E; Bonvicini, G; Cinabro, D; Dubrovin, M; Bornheim, A; Pappas, S P; Weinstein, A J; Rosner, J L; Briere, R A; Chen, G P; Ferguson, T; Tatishvili, G; Vogel, H; Watkins, M E; Adam, N E; Alexander, J P; Berkelman, K; Cassel, D G; Crede, V; Duboscq, J E; Ecklund, K M; Ehrlich, R; Fields, L; Galik, R S; Gibbons, L; Gittelman, B; Gray, R; Gray, S W; Hartill, D L; Heltsley, B K; Hertz, D; Hsu, L; Jones, C D; Kandaswamy, J; Kreinick, D L; Kuznetsov, V E; Mahlke-Krüger, H; Meyer, T O; Onyisi, P U E; Patterson, J R; Peterson, D; Pivarski, J; Riley, D; Ryd, A; Sadoff, A J; Schwarthoff, H; Shepherd, M R; Stroiney, S; Sun, W M; Thayer, J G; Urner, D; Wilksen, T; Weinberger, M; Athar, S B; Avery, P; Breva-Newell, L; Patel, R; Potlia, V; Stoeck, H; Yelton, J; Rubin, P; Cawlfield, C; Eisenstein, B I; Gollin, G D; Karliner, I; Kim, D; Lowrey, N; Naik, P; Sedlack, C; Selen, M; Thaler, J J; Williams, J; Wiss, J; Edwards, K W; Besson, D; Pedlar, T K; Cronin-Hennessy, D; Gao, K Y; Gong, D T; Kubota, Y; Lang, B W; Li, S Z; Poling, R; Scott, A W; Smith, A; Stepaniak, C J; Dobbs, S; Metreveli, Z; Seth, K K; Tomaradze, A; Zweber, P; Ernst, J; Mahmood, A H; Arms, K; Gan, K K; Severini, H; Asner, D M; Dytman, S A; Love, W; Mehrabyan, S; Mueller, J A; Savinov, V; Li, Z; Lopez, A; Mendez, H; Ramirez, J; Huang, G S; Miller, D H; Pavlunin, V; Sanghi, B; Shibata, E I; Shipsey, I P J; Adams, G S; Chasse, M; Cravey, M; Cummings, J P; Danko, I; Napolitano, J; Park, C S; Park, W; Thayer, J B; Thorndike, E H; Coan, T E; Gao, Y S; Liu, F; Stroynowski, R

2005-01-28

We have studied the inclusive photon spectra in Upsilon(2S) and Upsilon(3S) decays using a large statistics data sample obtained with the CLEO III detector. We present the most precise measurements of electric dipole (E1) photon transition rates and photon energies for Upsilon(2S) --> gammachi(bJ)(1P) and Upsilon(3S) --> gammachi(bJ)(2P) (J = 0, 1, 2). We measure the rate for a rare E1 transition Upsilon(3S) --> gammachi(b0)(1P) for the first time. We also set upper limits on the rates for the hindered magnetic dipole (M1) transitions to the eta(b)(1S) and eta(b)(2S) states.

Measurements of the exclusive decays of the upsilon(5S) to meson final states and improved B(s)* mass measurement.

PubMed

Aquines, O; Li, Z; Lopez, A; Mendez, H; Ramirez, J; Huang, G S; Miller, D H; Pavlunin, V; Sanghi, B; Shipsey, I P J; Xin, B; Adams, G S; Anderson, M; Cummings, J P; Danko, I; Napolitano, J; He, Q; Insler, J; Muramatsu, H; Park, C S; Thorndike, E H; Coan, T E; Gao, Y S; Liu, F; Stroynowski, R; Artuso, M; Blusk, S; Butt, J; Li, J; Menaa, N; Mountain, R; Nisar, S; Randrianarivony, K; Redjimi, R; Sia, R; Skwarnicki, T; Stone, S; Wang, J C; Zhang, K; Csorna, S E; Bonvicini, G; Cinabro, D; Dubrovin, M; Lincoln, A; Asner, D M; Edwards, K W; Briere, R A; Brock, I; Chen, J; Ferguson, T; Tatishvili, G; Vogel, H; Watkins, M E; Rosner, J L; Adam, N E; Alexander, J P; Berkelman, K; Cassel, D G; Duboscq, J E; Ecklund, K M; Ehrlich, R; Fields, L; Galik, R S; Gibbons, L; Gray, R; Gray, S W; Hartill, D L; Heltsley, B K; Hertz, D; Jones, C D; Kandaswamy, J; Kreinick, D L; Kuznetsov, V E; Mahlke-Krüger, H; Meyer, T O; Onyisi, P U E; Patterson, J R; Peterson, D; Phillips, E A; Pivarski, J; Riley, D; Ryd, A; Sadoff, A J; Schwarthoff, H; Shi, X; Stroiney, S; Sun, W M; Wilksen, T; Weinberger, M; Athar, S B; Avery, P; Breva-Newell, L; Patel, R; Potlia, V; Stoeck, H; Yelton, J; Rubin, P; Cawlfield, C; Eisenstein, B I; Karliner, I; Kim, D; Lowrey, N; Naik, P; Sedlack, C; Selen, M; White, E J; Wiss, J; Shepherd, M R; Besson, D; Pedlar, T K; Cronin-Hennessy, D; Gao, K Y; Gong, D T; Hietala, J; Kubota, Y; Klein, T; Lang, B W; Poling, R; Scott, A W; Smith, A; Dobbs, S; Metreveli, Z; Seth, K K; Tomaradze, A; Zweber, P; Ernst, J; Arms, K; Severini, H; Dytman, S A; Love, W; Mehrabyan, S; Savinov, V

2006-04-21

Using 420 pb(-1) of data collected on the upsilon(5S) resonance with the CLEO III detector, we reconstruct B mesons in 25 exclusive decay channels to measure or set upper limits on the decay rate of upsilon(5S) into B meson final states. We measure the inclusive B cross section to be sigma(upsilon(5S) --> BB(X)) = (0.177 +/- 0.030 +/- 0.016) nb and make the first measurements of the production rates of sigma(upsilon(5S) --> B*B*) = (0.131 +/- 0.025 +/- 0.014) nb and sigma(upsilon(5S) --> BB*) = (0.043 +/- 0.016 +/- 0.006) nb, respectively. We set 90% confidence level limits of sigma(upsilon(5S) -->BB) < 0.038 nb, sigma(upsilon(5S) --> B(*)B(*)pi) < 0.055 nb and sigma(upsilon(5S) --> BBpipi) < 0.024 nb. We also extract the most precise value of the B(s)* mass to date, M(B(s)*) = (5411.7 +/- 1.6 +/- 0.6) MeV/c2.

Search for charmonium and charmoniumlike states in {Upsilon}(1S) radiative decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shen, C. P.; University of Hawaii, Honolulu, Hawaii 96822; Wang, X. L.

2010-09-01

Using a sample of 102x10{sup 6} {Upsilon}(1S) events collected with the Belle detector, we report on the first search for charge-parity-even charmonium and charmoniumlike states in {Upsilon}(1S) radiative decays. No significant {chi}{sub cJ} or {eta}{sub c} signal is observed and 90% C.L. limits on B({Upsilon}(1S){yields}{gamma}{chi}{sub c0})<6.5x10{sup -4}, B({Upsilon}(1S){yields}{gamma}{chi}{sub c1})<2.3x10{sup -5}, B({Upsilon}(1S){yields}{gamma}{chi}{sub c2})<7.6x10{sup -6}, and B({Upsilon}(1S){yields}{gamma}{eta}{sub c})<5.7x10{sup -5} are obtained. The product branching fraction limits B({Upsilon}(1S){yields}{gamma}X(3872))B(X(3872){yields}{pi}{sup +}{pi}{sup -}{pi}{sup +}{pi}{sup -}J/{psi})<1.6x10{sup -6}, B({Upsilon}(1S){yields}{gamma}X(3872))B(X(3872){yields}{pi}{sup +}{pi}{sup -}{pi}{sup 0}J/{psi})<2.8x10{sup -6}, B({Upsilon}(1S){yields}{gamma}X(3915)) B(X(3915){yields}{omega}J/{psi})<3.0x10{sup -6}, and B({Upsilon}(1S){yields}{gamma}Y(4140))B(Y(4140){yields}{phi}J/{psi})<2.2x10{sup -6} are obtained at the 90% C.L. Furthermore, no evidence is found for excited charmonium states below 4.8 GeV/c{sup 2}.

Dipion invariant mass distribution of the anomalous {Upsilon}(1S){pi}{sup +}{pi}{sup -} and {Upsilon}(2S){pi}{sup +}{pi}{sup -} production near the peak of {Upsilon}(10860)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen Dianyong; He Jun; Nuclear Theory Group, Institute of Modern Physics of CAS, Lanzhou 730000

2011-10-01

Considering the defects of the previous work for estimating the anomalous production rates of e{sup +}e{sup -}{yields}{Upsilon}(1S){pi}{sup +}{pi}{sup -}, {Upsilon}(2S){pi}{sup +}{pi}{sup -} near the peak of the {Upsilon}(5S) resonance at {radical}(s)=10.87 GeV [K. F. Chen et al. (Belle Collaboration), Phys. Rev. Lett. 100, 112001 (2008)], we suggest a new scenario where the contributions from the direct dipion transition and the final-state interactions interfere to result in not only the anomalously large production rates, but also line shapes of the differential widths consistent with experimental measurement when assuming the reactions are due to the dipion emission of {Upsilon}(5S). At the end,more » we raise a new puzzle that the predicted differential width d{Gamma}({Upsilon}(5S){yields}{Upsilon}(2S){pi}{sup +}{pi}{sup -})/dcos{theta} has a discrepant trend from the data while other predictions are well in accord with the data. It should be further clarified by more accurate measurements carried by future experiments.« less

An Isoperimetric Inequality for Fundamental Tones of Free Plates

ERIC Educational Resources Information Center

Chasman, Laura

2009-01-01

We establish an isoperimetric inequality for the fundamental tone (first nonzero eigenvalue) of the free plate of a given area, proving the ball is maximal. Given tau greater than 0, the free plate eigenvalues omega and eigenfunctions upsilon are determined by the equation Delta Delta upsilon - tau Delta upsilon = omega upsilon together with…

Observation of Upsilon(3S)-->tau+tau- and tests of lepton universality in Upsilon decays.

PubMed

Besson, D; Pedlar, T K; Cronin-Hennessy, D; Gao, K Y; Gong, D T; Hietala, J; Kubota, Y; Klein, T; Lang, B W; Poling, R; Scott, A W; Smith, A; Zweber, P; Dobbs, S; Metreveli, Z; Seth, K K; Tomaradze, A; Ernst, J; Severini, H; Dytman, S A; Love, W; Savinov, V; Aquines, O; Li, Z; Lopez, A; Mehrabyan, S; Mendez, H; Ramirez, J; Huang, G S; Miller, D H; Pavlunin, V; Sanghi, B; Shipsey, I P J; Xin, B; Adams, G S; Anderson, M; Cummings, J P; Danko, I; Napolitano, J; He, Q; Insler, J; Muramatsu, H; Park, C S; Thorndike, E H; Yang, F; Coan, T E; Gao, Y S; Liu, F; Artuso, M; Blusk, S; Butt, J; Horwitz, N; Li, J; Menaa, N; Mountain, R; Nisar, S; Randrianarivony, K; Redjimi, R; Sia, R; Skwarnicki, T; Stone, S; Wang, J C; Zhang, K; Csorna, S E; Bonvicini, G; Cinabro, D; Dubrovin, M; Lincoln, A; Asner, D M; Edwards, K W; Briere, R A; Brock, I; Chen, J; Ferguson, T; Tatishvili, G; Vogel, H; Watkins, M E; Rosner, J L; Adam, N E; Alexander, J P; Berkelman, K; Cassel, D G; Duboscq, J E; Ecklund, K M; Ehrlich, R; Fields, L; Galik, R S; Gibbons, L; Gray, R; Gray, S W; Hartill, D L; Heltsley, B K; Hertz, D; Jones, C D; Kandaswamy, J; Kreinick, D L; Kuznetsov, V E; Mahlke-Krüger, H; Meyer, T O; Onyisi, P U E; Patterson, J R; Peterson, D; Pivarski, J; Riley, D; Ryd, A; Sadoff, A J; Schwarthoff, H; Shi, X; Stroiney, S; Sun, W M; Wilksen, T; Weinberger, M; Athar, S B; Patel, R; Potlia, V; Yelton, J; Rubin, P; Cawlfield, C; Eisenstein, B I; Karliner, I; Kim, D; Lowrey, N; Naik, P; Sedlack, C; Selen, M; White, E J; Wiss, J; Shepherd, M R

2007-02-02

Using data collected with the CLEO III detector at the CESR e+e- collider, we report on a first observation of the decay Upsilon(3S)-->tau+tau-, and precisely measure the ratio of branching fractions of Upsilon(nS), n=1, 2, 3, to tau+tau- and mu+mu- final states, finding agreement with expectations from lepton universality. We derive absolute branching fractions for these decays, and also set a limit on the influence of a low mass CP-odd Higgs boson in the decay of the Upsilon(1S).

Observation of $$\\Upsilon(\\mathrm{1S})$$ pair production in proton-proton collisions at $$\\sqrt{s} = $$ 8 TeV

DOE PAGES

Khachatryan, Vardan

2017-05-03

Here, pair production ofmore » $$\\Upsilon(\\mathrm{1S})$$ mesons is observed at the LHC in proton-proton collisions at $$ \\sqrt{s} = $$ 8 TeV by the CMS experiment in a data sample corresponding to an integrated luminosity of 20.7 fb$$^{-1}$$. Both $$\\Upsilon(\\mathrm{1S})$$ candidates are fully reconstructed via their decays to $$\\mu^{+}\\mu^{- } $$. The fiducial acceptance region is defined by an absolute $$\\Upsilon(\\mathrm{1S})$$ rapidity smaller than 2.0. The fiducial cross section for the production of $$\\Upsilon(\\mathrm{1S})$$ pairs, assuming that both mesons decay isotropically, is measured to be 68.8 $$\\pm$$ 12.7 (stat) $$\\pm$$ 7.4 (syst) $$\\pm$$ 2.8 ($$\\mathcal{B}$$) pb, where the third uncertainty comes from the uncertainty in the branching fraction of $$\\Upsilon(\\mathrm{1S})$$ decays to $$\\mu^{+}\\mu^{-}$$. Assuming instead that the $$\\Upsilon(\\mathrm{1S})$$ mesons are produced with different polarizations leads to variations in the measured cross section in the range from $$-38\\%$$ to $$+36\\%$$.« less

Observation of an enhancement in e{sup +}e{sup -}{yields}{Upsilon}(1S){pi}{sup +}{pi}{sup -}, {Upsilon}(2S){pi}{sup +}{pi}{sup -}, and {Upsilon}(3S){pi}{sup +}{pi}{sup -} production near {radical}(s)=10.89 GeV

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, K.-F.; Hou, W.-S.; Chang, P.

2010-11-01

We measure the production cross sections for e{sup +}e{sup -}{yields}{Upsilon}(1S){pi}{sup +}{pi}{sup -}, {Upsilon}(2S){pi}{sup +}{pi}{sup -}, and {Upsilon}(3S){pi}{sup +}{pi}{sup -} as a function of {radical}(s) between 10.83 GeV and 11.02 GeV. The data consist of 8.1 fb{sup -1} collected with the Belle detector at the KEKB e{sup +}e{sup -} collider. We observe enhanced production in all three final states that does not agree well with the conventional {Upsilon}(10860) line shape. A fit using a Breit-Wigner resonance shape yields a peak mass of [10 888.4{sub -2.6}{sup +2.7}(stat){+-}1.2(syst)] MeV/c{sup 2} and a width of [30.7{sub -7.0}{sup +8.3}(stat){+-}3.1(syst)] MeV/c{sup 2}.

Review of results from CESR (Cornell Electron Storage Ring) and DORIS (DOpple RIng Spiecher)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shibata, E.I.

1989-01-01

Selected results from e/sup +/e/sup /minus// colliding beam experiments operating in the ..sqrt..s approx. 10 GeV region are reviewed. Photon and ..pi pi.. transitions from the UPSILON(1S), UPSILON(2S), and UPSILON(3S) bound states have been used to study the spectroscopy of the b/bar b/ system. The UPSILON(4S), which decays almost exclusively to B/bar B/, has been used to search for rare exclusive decay modes of B mesons and to measure B/sup 0//bar B//sup 0/ mixing. Searches for the Higgs particle have been made in UPSILON and B decays. 43 refs., 13 figs., 2 tabs.

Fourfold Clusters of Rovibrational Energies in H2Te Studied With an Ab Initio Potential Energy Function

NASA Technical Reports Server (NTRS)

Jensen, Per; Li, Yan; Hirsch, Gerhard; Buenker, Robert J.; Lee, Timothy J.; Arnold, James O. (Technical Monitor)

1994-01-01

We report an ab initio investigation of the cluster effect (i.e., the formation of nearly degenerate, four member groups of rotation-vibration energy levels at higher J and K(sub a). values) in the H2Te molecule. The potential energy function has been calculated ab initio at a total of 334 molecular geometries by means of the CCSD(T) method where the (1s-4f) core electrons of Te were described by an effective core potential. The values of the potential energy function obtained cover the region up to around 10,000/cm above the equilibrium energy. On the basis of the ab initio potential, the rotation-vibration energy spectra of H2Te-130 and its deuterated isotopomers have been calculated with the MORBID (Morse Oscillator Rigid Bender Internal Dynamics) Hamiltonian and computer program. In particular, we have calculated the rotational energy manifolds for J less than or = 40 in the vibrational ground state, the upsilon(sub 2) state, the "first triad" (the upsilon(sub l)/upsilon(sub 3)/2upsilon(sub 2) interacting vibrational states), and the "second triad" (the upsilon(sub 1) + upsilon(sub 2/upsilon(sub 2) + upsilon(sub 3)/3upsilon(sub 2) states) of H2Te-130. We find that the cluster formation in H2Te is very similar to those of of H2Se and H2S, which we have studied previously. However, contrary to semiclassical predictions, we do not determine any significant displacement of the clusters towards lower J values relative to H2Se. Hence the experimental observation of the cluster states in H2Te will be at least as difficult as in H2Se.

Pulsar Candidate in Andromeda

NASA Image and Video Library

2017-03-23

NASA's Nuclear Spectroscope Telescope Array, or NuSTAR, has identified a candidate pulsar in Andromeda -- the nearest large galaxy to the Milky Way. This likely pulsar is brighter at high energies than the Andromeda galaxy's entire black hole population. The inset image shows the pulsar candidate in blue, as seen in X-ray light by NuSTAR. The background image of Andromeda was taken by NASA's Galaxy Evolution Explorer in ultraviolet light. Andromeda is a spiral galaxy like our Milky Way but larger in size. It lies 2.5 million light-years away in the Andromeda constellation. http://photojournal.jpl.nasa.gov/catalog/PIA20970

Terrestrial and Celestial Cartography,

DTIC Science & Technology

1979-05-01

39 ANDROMEDA GALAXY.................................................. 39 DISCUSSION...boundary of the most visible region in each photograph. ANDROMEDA GALAXY The nearest spiral galaxy is in the Andromeda constellation. It is designated...Astrophysical Journal, 131, 265 (1960) 51 167. Photoelectmc Photometry of the Andromeda Nebula in the U, B, V System. G. de Vaucouleurs

Distinct effect of actin cytoskeleton disassembly on exo- and endocytic events in a membrane patch of rat melanotrophs.

PubMed

Chowdhury, Helena H; Kreft, Marko; Zorec, Robert

2002-12-15

We used the cell-attached mode of patch-clamp technique to measure discrete attofarad steps in membrane capacitance (C(m)), reporting area changes in the plasma membrane due to unitary exocytic and endocytic events. To investigate the role of the actin cytoskeleton in elementary exocytic and endocytic events, neuroendocrine rat melanotrophs were treated with Clostridium spiroforme toxin (CST), which specifically depolymerises F-actin. The average amplitude of exocytic events was not significantly different in control and in CST-treated cells. However, the amplitude of endocytic events was significantly smaller in CST-treated cells as compared to controls. The frequency of exocytic events increased by 2-fold in CST-treated cells relative to controls. In control cells the average frequency of exocytic events (upsilon;(exo)) was lower than the frequency of endocytic events (upsilon;(endo)) with a ratio upsilon;(exo)/upsilon;(endo) < 1. In the toxin treated cells, the predominant process was exocytosis with a ratio (upsilon;(exo)/upsilon;(endo) > 1). To study the coupling between the two processes, the slopes of regression lines relating upsilon;(exo) and upsilon;(endo) in a given patch of membrane were studied. The slopes of regression lines were similar, whereas the line intercepts with the y-axis were significantly different. The increased frequency of unitary exocytic events in CST-treated cells is consistent with the view, that the actin cytoskeleton acts as a barrier for exocytosis. While the disassembly of the actin cytoskeleton diminishes the size of unitary endocytic events, suggesting an important role of the actin cytoskeleton in determining the size of endocytic vesicles, the coupling between exocytosis and endocytosis in a given patch of membrane was independent of the state of the actin cytoskeleton.

Interaction between alpha and upsilon-crystallin, common to the eye of the Australian platypus, by radical probe mass spectrometry.

PubMed

Issa, Samah; Downard, Kevin M

2006-10-01

The interaction between alpha-crystallin and upsilon-crystallin, a class recently discovered in the eye of the Australian platypus, has been shown by native shift gel assay and examined by radical probe mass spectrometry in the context of the ability of alpha-crystallin to protect upsilon-crystallin from oxidation and oxidative damage through radical-based oxidative stress mechanisms. Residues 22-41, 132-148, 212-227 and 245-264 of upsilon-crystallin display the greatest protection when interacted with alpha-crystallin at a ratio of 2 : 1 observed for the complex, which is commensurate with their levels measured in the eye of the platypus. Across each domain, a delay in the onset of oxidative damage is observed as the time of exposure to radicals is increased. The results are discussed in the context of the structure of the porcine homologue of upsilon-crystallin. Copyright 2006 John Wiley & Sons, Ltd.

A New Giant Stellar Structure in the Outer Halo of M31

NASA Astrophysics Data System (ADS)

Zucker, Daniel B.; Kniazev, Alexei Y.; Bell, Eric F.; Martínez-Delgado, David; Grebel, Eva K.; Rix, Hans-Walter; Rockosi, Constance M.; Holtzman, Jon A.; Walterbos, Rene A. M.; Ivezić, Željko; Brinkmann, J.; Brewington, Howard; Harvanek, Michael; Kleinman, S. J.; Krzesinski, Jurek; Lamb, Don Q.; Long, Dan; Newman, Peter R.; Nitta, Atsuko; Snedden, Stephanie A.

2004-09-01

The Sloan Digital Sky Survey has revealed an overdensity of luminous red giant stars ~3° (40 projected kpc) to the northeast of M31, which we have called Andromeda NE. The line-of-sight distance to Andromeda NE is within ~50 kpc of M31; Andromeda NE is not a physically unrelated projection. Andromeda NE has a g-band absolute magnitude of ~-11.6 and a central surface brightness of ~29 mag arcsec-2, making it nearly 2 orders of magnitude more diffuse than any known Local Group dwarf galaxy at that luminosity. Based on its distance and morphology, Andromeda NE is likely undergoing tidal disruption. Andromeda NE's red giant branch color is unlike that of M31's present-day outer disk or the stellar stream reported by Ibata et al., arguing against a direct link between Andromeda NE and these structures. However, Andromeda NE has a red giant branch color similar to that of the G1 clump; it is possible that these structures are both material torn off of M31's disk in the distant past or that these are both part of one ancient stellar stream.

Andromeda Galaxy

NASA Image and Video Library

2003-12-10

This image is from NASA Galaxy Evolution Explorer is an observation of the large galaxy in Andromeda, Messier 31. The Andromeda galaxy is the most massive in the local group of galaxies that includes our Milky Way.

Establishment of uracil auxotrophic dikaryotic strains of Lentinula edodes by crossbreeding.

PubMed

Zhou, Chenli; Xi, Liping; Mao, Wenjun; Wan, Jianing; Li, Yan; Wang, Ying; Bao, Dapeng

2017-03-01

The uracil auxotrophic monokaryotic strain 423-9 of Lentinula edodes was crossed with nine monokaryons (cro2-2-9, W66-1, xd2-3-2, QingKe 20A, 241-1-1, 9015-1, L66-2, 241-1-2, and Qing 23A) derived from wild type strains of L. edodes . Nine dikaryotic hybrids were established from these crosses. These hybrids were fruited and 496 single spore isolates were obtained. Among these single spore isolates, 166 were identified as monokaryons under a microscope. We screened these monokaryons on selective medium and obtained 19 uracil auxotrophic monokaryons. By using the Monkaryon-monkaryon crossing method among the uracil auxotrophic monokaryons, 56 uracil auxotrophic dikaryotic strains were established on selective medium. These dikaryotic strains were unable to grow on minimal medium without uracil and exhibited slow growth rates on PDA plates compared to the wild type strain. The uracil auxotrophic dikaryotic strains also showed more vigorous growth on sawdust cultivation medium containing uracil than that without uracil. The fruiting tests showed that they formed normal fruiting bodies on the sawdust medium containing uracil. The results show that the uracil auxotrophic dikaryotic strain of L. edodes could be produced by mating, and will provide a valuable resource for future genetic studies and for spawn protection and identification.

The LSS 4300: A hot counterpart of Upsilon Sgr and KS Per?

NASA Technical Reports Server (NTRS)

Drilling, J. S.; Schoenberner, D.

1983-01-01

A number of observations indicate that the star LSS 4300 is a high temperature analog of the hydrogen-deficient binaries upsilon Sgr and KS Per. A preliminary model-atmosphere analysis based on high-dispersion spectra obtained at Kitt Peak and Cerro Tololo yields T(eff) = 14,400 K, log(g) = 1.4, n(H)/n(He) = 0.003, and n(N)/n(C) = 20 (the corresponding values for upsilon Sgr are T(eff) = 10,000 K, log(g) = 1, n(H)/n(He) = 0.0005, and n(N)/n(C) = 20). The optical emission-line spectrum of LSS 4300 is nearly identical to that of upsilon Sgr, including strong, broad H alpha, FeII and Ca II emission. The ultraviolet spectrum of LSS 4300 was observed with IUE, and can be attributed almost entirely to the visible star. The JHKL photometry of LSS 4300 obtained at Cerro Tololo reveals an infrared excess nearly identical to that of upsilon Sgr. It is suggested that LSS 4300, like upsilon Sgr and KS Per, is a close binary system consisting of a helium supergiant of about one solar mass, and a secondary which is overluminous for its mass due to the accretion of matter from the primary, which is undergoing its second mass exchange.

The Impact of Star Formation Histories on Stellar Mass Estimation: Implications from the Local Group Dwarf Galaxies

NASA Astrophysics Data System (ADS)

Zhang, Hong-Xin; Puzia, Thomas H.; Weisz, Daniel R.

2017-11-01

Building on the relatively accurate star formation histories (SFHs) and metallicity evolution of 40 Local Group (LG) dwarf galaxies derived from resolved color-magnitude diagram modeling, we carried out a comprehensive study of the influence of SFHs, metallicity evolution, and dust extinction on the UV-to-near-IR color-mass-to-light ratio (color-{log}{{{\\Upsilon }}}\\star (λ)) distributions and M ⋆ estimation of local universe galaxies. We find that (1) the LG galaxies follow color-{log}{{{\\Upsilon }}}\\star (λ) relations that fall in between the ones calibrated by previous studies; (2) optical color-{log}{{{\\Upsilon }}}\\star (λ) relations at higher [M/H] are generally broader and steeper; (3) the SFH “concentration” does not significantly affect the color-{log}{{{\\Upsilon }}}\\star (λ) relations; (4) light-weighted ages < {age}{> }λ and metallicities < [{{M}}/{{H}}]{> }λ together constrain {log}{{{\\Upsilon }}}\\star (λ) with uncertainties ranging from ≲0.1 dex for the near-IR up to 0.2 dex for the optical passbands; (5) metallicity evolution induces significant uncertainties to the optical but not near-IR {{{\\Upsilon }}}\\star (λ) at a given < {age}{> }λ and < [{{M}}/{{H}}]{> }λ ; (6) the V band is the ideal luminance passband for estimating {{{\\Upsilon }}}\\star (λ) from single colors, because the combinations of {{{\\Upsilon }}}\\star (V) and optical colors such as B - V and g - r exhibit the weakest systematic dependences on SFHs, metallicities, and dust extinction; and (7) without any prior assumption on SFHs, M ⋆ is constrained with biases ≲0.3 dex by the optical-to-near-IR SED fitting. Optical passbands alone constrain M ⋆ with biases ≲0.4 dex (or ≲0.6 dex) when dust extinction is fixed (or variable) in SED fitting. SED fitting with monometallic SFH models tends to underestimate M ⋆ of real galaxies. M ⋆ tends to be overestimated (or underestimated) at the youngest (or oldest) < {age}{> }{mass}.

Planetary system formation: Effects of planet-disk tidal interaction

NASA Astrophysics Data System (ADS)

Bryden, Geoffrey

The standard theory of planet formation begins with the coagulation of solid planetesimals (Safronov 1969, Wetherill & Stewart 1989) followed by the accretion of disk gas once the solid core reaches a critical mass >~10M⊕ (Perri & Cameron 1974, Mizuno 1980, Bodenheimer & Pollack 1986). The classic picture of planet formation, in which each planet's position in the nebula remain fixed, is challenged by the observed distribution of extra-solar planets (e.g. Mayor & Queloz 1995, Butler et al. 1999). The majority of these planets are on short-period orbits ( P<~10 days) very close to their central stars ( ap<~0.1 AU), suggesting that orbital migration plays an important role in the formation of planetary systems. The intent of this thesis is to explore the inclusion of protoplanetary tidal forces into the classical theory of planetary system formation. Protoplanetary interaction with the surrounding gaseous nebulae directly determines giant planets' semi-major axes, masses, gas/solid ratio, and relative spacing. In essence, the process of gap formation determines the primary observational characteristics of both individual planets and their composite systems. Detailed simulations of gap formation produce a range of planetary masses consistent with the observed distribution. Fully self-interacting models of planetary system formation can be used to create a wide variety of planetary systems, ranging from the solar system to Upsilon Andromeda (Butler et al. 1999).

A structural determinant in the uracil DNA glycosylase superfamily for the removal of uracil from adenine/uracil base pairs

PubMed Central

Lee, Dong-Hoon; Liu, Yinling; Lee, Hyun-Wook; Xia, Bo; Brice, Allyn R.; Park, Sung-Hyun; Balduf, Hunter; Dominy, Brian N.; Cao, Weiguo

2015-01-01

The uracil DNA glycosylase superfamily consists of several distinct families. Family 2 mismatch-specific uracil DNA glycosylase (MUG) from Escherichia coli is known to exhibit glycosylase activity on three mismatched base pairs, T/U, G/U and C/U. Family 1 uracil N-glycosylase (UNG) from E. coli is an extremely efficient enzyme that can remove uracil from any uracil-containing base pairs including the A/U base pair. Here, we report the identification of an important structural determinant that underlies the functional difference between MUG and UNG. Substitution of a Lys residue at position 68 with Asn in MUG not only accelerates the removal of uracil from mismatched base pairs but also enables the enzyme to gain catalytic activity on A/U base pairs. Binding and kinetic analysis demonstrate that the MUG-K68N substitution results in enhanced ground state binding and transition state interactions. Molecular modeling reveals that MUG-K68N, UNG-N123 and family 5 Thermus thermophiles UDGb-A111N can form bidentate hydrogen bonds with the N3 and O4 moieties of the uracil base. Genetic analysis indicates the gain of function for A/U base pairs allows the MUG-K68N mutant to remove uracil incorporated into the genome during DNA replication. The implications of this study in the origin of life are discussed. PMID:25550433

Space Science

NASA Image and Video Library

1978-12-01

The Andromeda Galaxy, also known as M31 since it is the 31st object on Messier's list of diffuse sky objects, is the nearest large galaxy to our own Milky Way galaxy. Our galaxy is thought to look much like Andromeda, but it is about four times as massive as the Milky Way. Together these two galaxies dominate the Local Group of galaxies. The diffused light from Andromeda is caused by hundreds of billions of stars that compose it. The several distinct stars that surround Andromeda's image are actually stars in our galaxy that are well in front of the background object. Andromeda is so distant that it takes approximately two millions years for light to reach us from there.

Our Neighbor Andromeda

NASA Image and Video Library

2010-02-17

The immense Andromeda galaxy, also known as Messier 31, is captured in full in this image from NASA Wide-field Infrared Survey Explorer. Andromeda is the closest large galaxy to our Milky Way galaxy, and is located 2.5 million light-years from our sun.

Growth inhibition of Saccharomyces cerevisiae by the immunosuppressant leflunomide is due to the inhibition of uracil uptake via Fur4p.

PubMed

Fujimura, H

1998-10-01

The immunosuppressant leflunomide inhibits cytokine-stimulated proliferation of lymphoid cells in vitro and also inhibits the growth of the eukaryotic microorganism Saccharomyces cerevisiae. To elucidate the molecular mechanism of action of the drug, two yeast genes which suppress the anti-proliferative effect when present in multiple copies were cloned and designated MLF1 and MLF2 for multicopy suppressor of leflunomide sensitivity. DNA sequencing analysis revealed that the MLF1 gene is identical to the FUR4 gene, which encodes a uracil permease and functions to import uracil efficiently. The MLF2 was found to be identical to the URA3 gene. Excess exogenous uracil also overcomes the anti-proliferative effect of leflunomide on yeast cells. Uracil prototrophy also conferred resistance to leflunomide. Uracil uptake was inhibited by leflunomide. Thus, the growth inhibition by leflunomide seen in a S. cerevisiae ura3 auxotroph is due to the inhibition of the entry of exogenous uracil via the Fur4 uracil permease.

High-resolution Fourier transform spectroscopy of the Meinel system of OH

NASA Technical Reports Server (NTRS)

Abrams, Mark C.; Davis, Sumner P.; Rao, M. L. P.; Engleman, Rolf, Jr.; Brault, James W.

1994-01-01

The infrared spectrum of the hydroxyl radical OH, between 1850 and 9000/cm has been measured with a Fourier transform spectrometer. The source, a hydrogen-ozone diffusion flame, was designed to study the excitation of rotation-vibration levels of the OH Meinel bands under conditions similar to those in the upper atmosphere which produce the nighttime OH airglow emission. Twenty-three bands were observed: nine bands in the Delta upsilon = 1 sequence, nine bands in the Delta upsilon = 2 sequence, and five bands in the Delta upsilon = 3 sequence. A global nonlinear least-squares fit of 1696 lines yielded molecular parameters with a standard deviation of 0.003/cm. Term values are computed, and transition frequencies in the Delta upsilon = 3, 4, 5, 6 sequences in the near-infrared are predicted.

Uracil-DNA Glycosylase in Base Excision Repair and Adaptive Immunity

PubMed Central

Doseth, Berit; Visnes, Torkild; Wallenius, Anders; Ericsson, Ida; Sarno, Antonio; Pettersen, Henrik Sahlin; Flatberg, Arnar; Catterall, Tara; Slupphaug, Geir; Krokan, Hans E.; Kavli, Bodil

2011-01-01

Genomic uracil is a DNA lesion but also an essential key intermediate in adaptive immunity. In B cells, activation-induced cytidine deaminase deaminates cytosine to uracil (U:G mispairs) in Ig genes to initiate antibody maturation. Uracil-DNA glycosylases (UDGs) such as uracil N-glycosylase (UNG), single strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), and thymine-DNA glycosylase remove uracil from DNA. Gene-targeted mouse models are extensively used to investigate the role of these enzymes in DNA repair and Ig diversification. However, possible species differences in uracil processing in humans and mice are yet not established. To address this, we analyzed UDG activities and quantities in human and mouse cell lines and in splenic B cells from Ung+/+ and Ung−/− backcrossed mice. Interestingly, human cells displayed ∼15-fold higher total uracil excision capacity due to higher levels of UNG. In contrast, SMUG1 activity was ∼8-fold higher in mouse cells, constituting ∼50% of the total U:G excision activity compared with less than 1% in human cells. In activated B cells, both UNG and SMUG1 activities were at levels comparable with those measured for mouse cell lines. Moreover, SMUG1 activity per cell was not down-regulated after activation. We therefore suggest that SMUG1 may work as a weak backup activity for UNG2 during class switch recombination in Ung−/− mice. Our results reveal significant species differences in genomic uracil processing. These findings should be taken into account when mouse models are used in studies of uracil DNA repair and adaptive immunity. PMID:21454529

Andromeda and its Satellites: A Kinematic Perspective

NASA Astrophysics Data System (ADS)

Collins, M. L. M.; Rich, R. M.; Chapman, S. C.

2012-08-01

Using spectroscopic data taken with Keck II DEIMOS by the Z-PAndAS team in the Andromeda-Triangulum region, I present a comparison of the disc and satellite systems of Andromeda with those of our own Galaxy. I discuss the observed discrepancies between the masses and scale radii of Andromeda dwarf spheroidal galaxies of a given luminosity with those of the Milky Way. I also present an analysis of the newly discovered M31 thick disc, which is measured to be hotter, more extended and thicker than that seen in the Milky Way.

Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1

DOE PAGES

Alsøe, Lene; Sarno, Antonio; Carracedo, Sergio; ...

2017-08-03

Both a DNA lesion and an intermediate for antibody maturation, uracil is primarily processed by base excision repair (BER), either initiated by uracil-DNA glycosylase (UNG) or by single-strand selective monofunctional uracil DNA glycosylase (SMUG1). The relative in vivo contributions of each glycosylase remain elusive. To assess the impact of SMUG1 deficiency, we measured uracil and 5-hydroxymethyluracil, another SMUG1 substrate, in Smug1 -/ - mice. Here, we found that 5-hydroxymethyluracil accumulated in Smug1 -/ - tissues and correlated with 5-hydroxymethylcytosine levels. The highest increase was found in brain, which contained about 26-fold higher genomic 5-hydroxymethyluracil levels than the wild type. Smug1more » -/ - mice did not accumulate uracil in their genome and Ung -/ - mice showed slightly elevated uracil levels. Contrastingly, Ung -/ -Smug1 -/ - mice showed a synergistic increase in uracil levels with up to 25-fold higher uracil levels than wild type. Whole genome sequencing of UNG/SMUG1-deficient tumours revealed that combined UNG and SMUG1 deficiency leads to the accumulation of mutations, primarily C to T transitions within CpG sequences. This unexpected sequence bias suggests that CpG dinucleotides are intrinsically more mutation prone. In conclusion, we showed that SMUG1 efficiently prevent genomic uracil accumulation, even in the presence of UNG, and identified mutational signatures associated with combined UNG and SMUG1 deficiency.« less

Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alsøe, Lene; Sarno, Antonio; Carracedo, Sergio

Both a DNA lesion and an intermediate for antibody maturation, uracil is primarily processed by base excision repair (BER), either initiated by uracil-DNA glycosylase (UNG) or by single-strand selective monofunctional uracil DNA glycosylase (SMUG1). The relative in vivo contributions of each glycosylase remain elusive. To assess the impact of SMUG1 deficiency, we measured uracil and 5-hydroxymethyluracil, another SMUG1 substrate, in Smug1 -/ - mice. Here, we found that 5-hydroxymethyluracil accumulated in Smug1 -/ - tissues and correlated with 5-hydroxymethylcytosine levels. The highest increase was found in brain, which contained about 26-fold higher genomic 5-hydroxymethyluracil levels than the wild type. Smug1more » -/ - mice did not accumulate uracil in their genome and Ung -/ - mice showed slightly elevated uracil levels. Contrastingly, Ung -/ -Smug1 -/ - mice showed a synergistic increase in uracil levels with up to 25-fold higher uracil levels than wild type. Whole genome sequencing of UNG/SMUG1-deficient tumours revealed that combined UNG and SMUG1 deficiency leads to the accumulation of mutations, primarily C to T transitions within CpG sequences. This unexpected sequence bias suggests that CpG dinucleotides are intrinsically more mutation prone. In conclusion, we showed that SMUG1 efficiently prevent genomic uracil accumulation, even in the presence of UNG, and identified mutational signatures associated with combined UNG and SMUG1 deficiency.« less

Primary fragmentation pathways of gas phase [M(uracil-H)(uracil)]+ complexes (M=Zn, Cu, Ni, Co, Fe, Mn, Cd, Pd , Mg, Ca, Sr, Ba, and Pb): loss of uracil versus HNCO.

PubMed

Ali, Osama Y; Randell, Nicholas M; Fridgen, Travis D

2012-04-23

Complexes formed between metal dications, the conjugate base of uracil, and uracil are investigated by sustained off-resonance irradiation collision-induced dissociation (SORI-CID) in a Fourier transform ion cyclotron resonance (FTICR) mass spectrometer. Positive-ion electrospray spectra show that [M(Ura-H)(Ura)](+) (M=Zn, Cu, Ni, Co, Fe, Mn, Cd, Pd, Mg, Ca, Sr, Ba, or Pb) is the most abundant ion even at low concentrations of uracil. SORI-CID experiments show that the main primary decomposition pathway for all [M(Ura-H)(Ura)](+) , except where M=Ca, Sr, Ba, or Pb, is the loss of HNCO. Under the same SORI-CID conditions, when M is Ca, Sr, Ba, or Pb, [M(Ura-H)(Ura)](+) are shown to lose a molecule of uracil. Similar results were observed under infrared multiple-photon dissociation excitation conditions, except that [Ca(Ura-H)(Ura)](+) was found to lose HNCO as the primary fragmentation product. The binding energies between neutral uracil and [M(Ura-H)](+) (M=Zn, Cu, Ni, Fe, Cd, Pd ,Mg, Ca, Sr Ba, or Pb) are calculated by means of electronic-structure calculations. The differences in the uracil binding energies between complexes which lose uracil and those which lose HNCO are consistent with the experimentally observed differences in fragmentation pathways. A size dependence in the binding energies suggests that the interaction between uracil and [M(Ura-H)](+) is ion-dipole complexation and the experimental evidence presented supports this. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Measurement of the Upsilon (1S) Production Cross Section in Proton-Proton Collisions at Center of Mass Energy 7 TeV

NASA Astrophysics Data System (ADS)

Scherzer, Maxwell Ian

A measurement of the cross section for Upsilon(1S) production in proton-proton collisions at center of mass energy 7 TeV is presented. The measurement uses the Upsilon(1S) → mu+mu - decay mode and covers up to a transverse momentum of 26 GeV in two bins of rapidity; |yUpsilon(1 S)| < 1.2 and 1.2 < |y Upsilon(1S)| < 2.4. The results are based on an integrated luminosity of 1.13 pb-1 , collected with the ATLAS detector at the Large Hadron Collider. Templates derived from data are used to model the continuum background. In order to eliminate theoretical uncertainties due to the unknown polarization, the measurement is restricted to the case where both muons have a transverse momentum of pmu T > 4 GeV and a pseudorapidity |etamu| < 2.5. The results are compared to two theoretical predictions: they agree to within a factor of two with the PYTHIA implementation of NRQCD while disagreeing by up to a factor of ten with the color singlet model at next-to-leading order.

Complementarity and path distinguishability: Some recent results concerning photon pairs

NASA Technical Reports Server (NTRS)

Shimony, Abner; Jaeger, Gregg

1994-01-01

Two results concerning photon pairs, one previously reported and one new, are summarized. It was previously shown that if the two photons are prepared in a quantum state formed from bar-A and bar-A' for photon 1 and bar-B and bar-B' for photon 2, then both one- and two-particle interferometry can be studied. If upsilon(sub i) is the visibility of one-photon interference fringes (i = 1,2) and upsilon(sub 12) is the visibility of two-photon fringes (a concept which we explicitly define), then upsilon(sub i) squared + upsilon(sub 12) squared is less than or equal to 1. The second result concerns the distinguishability of the paths of photon 2, using the known 2-photon state. A proposed measure E for path distinguishability is based upon finding an optimum strategy for betting on the outcome of a path measurement. Mandel has also proposed a measure of distinguishability P(sub D), defined in terms of the density operator rho of photon 2. We show that E is greater than or equal to P(sub D) and that upsilon(sub 2) = (1 - E(exp 2))exp 1/2.

Polarization in Quarkonium Production

DOE Office of Scientific and Technical Information (OSTI.GOV)

Russ, James S.

Production mechanisms for quarkonium states in hadronic collisions remain difficult to understand. The decay angular distributions of J/more » $$\\psi$$ or $$\\Upsilon(nS)$$ states into $$\\mu^+ \\mu^-$$ final states are sensitive to the matrix elements in the production process and provide a unique tool to evaluate different models. This talk will focus on new results for the spin alignment of $$\\Upsilon(nS)$$ states produced in $$p\\bar{p}$$ collisions at $$\\sqrt{s}$$ = 1.96 TeV using the CDF II detector at the Fermilab Tevatron. The data sample corresponds to an integrated luminosity of 6.7 fb$$^{-1}$$. The angular distributions are analyzed as functions of the transverse momentum of the dimuon final state in both the Collins-Soper and the s-channel helicity frames using a unique data-driven background determination method. Consistency of the analysis is checked by comparing frame-invariant quantities derived from parametrizations of the angular distributions measured in each choice of reference frame. This analysis is the first to quantify the complete three-dimensional angular distribution of $$\\Upsilon(1S), \\Upsilon(2S)$$ and $$\\Upsilon(3S)$$ decays. The decays are nearly isotropic in all frames, even when produced with large transverse momentum.« less

Andromeda: a peptide search engine integrated into the MaxQuant environment.

PubMed

Cox, Jürgen; Neuhauser, Nadin; Michalski, Annette; Scheltema, Richard A; Olsen, Jesper V; Mann, Matthias

2011-04-01

A key step in mass spectrometry (MS)-based proteomics is the identification of peptides in sequence databases by their fragmentation spectra. Here we describe Andromeda, a novel peptide search engine using a probabilistic scoring model. On proteome data, Andromeda performs as well as Mascot, a widely used commercial search engine, as judged by sensitivity and specificity analysis based on target decoy searches. Furthermore, it can handle data with arbitrarily high fragment mass accuracy, is able to assign and score complex patterns of post-translational modifications, such as highly phosphorylated peptides, and accommodates extremely large databases. The algorithms of Andromeda are provided. Andromeda can function independently or as an integrated search engine of the widely used MaxQuant computational proteomics platform and both are freely available at www.maxquant.org. The combination enables analysis of large data sets in a simple analysis workflow on a desktop computer. For searching individual spectra Andromeda is also accessible via a web server. We demonstrate the flexibility of the system by implementing the capability to identify cofragmented peptides, significantly improving the total number of identified peptides.

Collision Tomography: Physical Properties of Possible Progenitors of the Andromeda Stellar Stream

NASA Astrophysics Data System (ADS)

Miki, Yohei; Mori, Masao; Rich, R. Michael

2016-08-01

To unveil a progenitor of the Andromeda Giant Stellar Stream, we investigate the interaction between an accreting satellite galaxy and the Andromeda Galaxy using an N-body simulation. We perform a comprehensive exploration of the properties of the progenitor dwarf galaxy, using 247 models of varying mass, mass distribution, and size. We show that the binding energy of the progenitor is the crucial parameter in reproducing the Andromeda Giant Stellar Stream and the shell-like structures surrounding the Andromeda Galaxy. As a result of the simulations, the progenitor must satisfy a simple scaling relation between the core radius, the total mass and the tidal radius. Using this relation, we successfully constrain the physical properties of the progenitors to have masses ranging from 5× {10}8{M}⊙ to 5× {10}9{M}⊙ and central surface densities around {10}3 {M}⊙ {{pc}}-2. A detailed comparison between our result and the nearby observed galaxies indicates that possible progenitors of the Andromeda Giant Stellar Stream include a dwarf elliptical galaxy, a dwarf irregular galaxy, and a small spiral galaxy.

Unfolding the prompt gamma ray spectra measured in a Lanthanum Bromide detector using GRAVEL method

NASA Astrophysics Data System (ADS)

De, S.; Thomas, R. G.; Rout, P. C.; Suryanarayana, S. V.; Nayak, B. K.; Saxena, A.

2018-02-01

Prompt fission Upsilon -ray energy spectra in spontaneous fission of 252Cf has been measured using a 6'' LaBr3(Ce) detector. Unfolding of the measured Upsilon -ray energy spectra has been carried out using GRAVEL method. The response matrix of the detector has been simulated using GEANT4 and the unfolding of Upsilon -ray energy spectra for 60Co and 137Cs sources have been validated. This unfolding technique has then been applied to the prompt gamma spectra obtained from the spontaneous fission of 252Cf.

PAndAS' CUBS: DISCOVERY OF TWO NEW DWARF GALAXIES IN THE SURROUNDINGS OF THE ANDROMEDA AND TRIANGULUM GALAXIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, Nicolas F.; McConnachie, Alan W.; Irwin, Mike

We present the discovery of two new dwarf galaxies, Andromeda XXI and Andromeda XXII, located in the surroundings of the Andromeda and Triangulum galaxies (M31 and M33). These discoveries stem from the first year data of the Pan-Andromeda Archaeological Survey, a photometric survey of the M31/M33 group conducted with the Megaprime/MegaCam Wide-Field Camera mounted on the Canada-France-Hawaii Telescope. Both satellites appear as spatial overdensities of stars which, when plotted in a color-magnitude diagram, follow metal-poor, [Fe/H] = -1.8, red giant branches at the distance of M31/M33. Andromeda XXI is a moderately bright dwarf galaxy (M{sub V} = -9.9 +- 0.6),more » albeit with low surface brightness, emphasizing again that many relatively luminous M31 satellites still remain to be discovered. It is also a large satellite, with a half-light radius close to 1 kpc, making it the fourth largest Local Group dwarf spheroidal galaxy after the recently discovered Andromeda XIX, Andromeda II, and Sagittarius around the Milky Way, and supports the trend that M31 satellites are larger than their Milky Way counterparts. Andromeda XXII is much fainter (M{sub V} = -6.5 +- 0.8) and lies a lot closer in projection to M33 than it does to M31 (42 versus 224 kpc), suggesting that it could be the first Triangulum satellite to be discovered. Although this is a very exciting possibility in the context of a past interaction of M33 with M31 and the fate of its satellite system, a confirmation will have to await a good distance estimate to confirm its physical proximity to M33. Along with the dwarf galaxies found in previous surveys of the M31 surroundings, these two new satellites bring the number of dwarf spheroidal galaxies in this region to 20.« less

Compartmentalized self-replication (CSR) selection of Thermococcus litoralis Sh1B DNA polymerase for diminished uracil binding.

PubMed

Tubeleviciute, Agne; Skirgaila, Remigijus

2010-08-01

The thermostable archaeal DNA polymerase Sh1B from Thermococcus litoralis has a typical uracil-binding pocket, which in nature plays an essential role in preventing the accumulation of mutations caused by cytosine deamination to uracil and subsequent G-C base pair transition to A-T during the genomic DNA replication. The uracil-binding pocket recognizes and binds uracil base in a template strand trapping the polymerase. Since DNA replication stops, the repair systems have a chance to correct the promutagenic event. Archaeal family B DNA polymerases are employed in various PCR applications. Contrary to nature, in PCR the uracil-binding property of archaeal polymerases is disadvantageous and results in decreased DNA amplification yields and lowered sensitivity. Furthermore, in diagnostics qPCR, RT-qPCR and end-point PCR are performed using dNTP mixtures, where dTTP is partially or fully replaced by dUTP. Uracil-DNA glycosylase treatment and subsequent heating of the samples is used to degrade the DNA containing uracil and prevent carryover contamination, which is the main concern in diagnostic laboratories. A thermostable archaeal DNA polymerase with the abolished uracil binding would be a highly desirable and commercially interesting product. An attempt to disable uracil binding in DNA polymerase Sh1B from T. litoralis by generating site-specific mutants did not yield satisfactory results. However, a combination of random mutagenesis of the whole polymerase gene and compartmentalized self-replication was successfully used to select variants of thermostable Sh1B polymerase capable of performing PCR with dUTP instead of dTTP.

Recognition of the pro-mutagenic base uracil by family B DNA polymerases from archaea.

PubMed

Shuttleworth, Gillian; Fogg, Mark J; Kurpiewski, Michael R; Jen-Jacobson, Linda; Connolly, Bernard A

2004-03-26

Archaeal family B DNA polymerases contain a specialised pocket that binds tightly to template-strand uracil, causing the stalling of DNA replication. The mechanism of this unique "template-strand proof-reading" has been studied using equilibrium binding measurements, DNA footprinting, van't Hoff analysis and calorimetry. Binding assays have shown that the polymerase preferentially binds to uracil in single as opposed to double-stranded DNA. Tightest binding is observed using primer-templates that contain uracil four bases in front of the primer-template junction, corresponding to the observed stalling position. Ethylation interference analysis of primer-templates shows that the two phosphates, immediately flanking the uracil (NpUpN), are important for binding; contacts are also made to phosphates in the primer-strand. Microcalorimetry and van't Hoff analysis have given a fuller understanding of the thermodynamic parameters involved in uracil recognition. All the results are consistent with a "read-ahead" mechanism, in which the replicating polymerase scans the template, ahead of the replication fork, for the presence of uracil and halts polymerisation on detecting this base. Post-stalling events, serving to eliminate uracil, await full elucidation.

Uracil recognition by replicative DNA polymerases is limited to the archaea, not occurring with bacteria and eukarya.

PubMed

Wardle, Josephine; Burgers, Peter M J; Cann, Isaac K O; Darley, Kate; Heslop, Pauline; Johansson, Erik; Lin, Li-Jung; McGlynn, Peter; Sanvoisin, Jonathan; Stith, Carrie M; Connolly, Bernard A

2008-02-01

Family B DNA polymerases from archaea such as Pyrococcus furiosus, which live at temperatures approximately 100 degrees C, specifically recognize uracil in DNA templates and stall replication in response to this base. Here it is demonstrated that interaction with uracil is not restricted to hyperthermophilic archaea and that the polymerase from mesophilic Methanosarcina acetivorans shows identical behaviour. The family B DNA polymerases replicate the genomes of archaea, one of the three fundamental domains of life. This publication further shows that the DNA replicating polymerases from the other two domains, bacteria (polymerase III) and eukaryotes (polymerases delta and epsilon for nuclear DNA and polymerase gamma for mitochondrial) are also unable to recognize uracil. Uracil occurs in DNA as a result of deamination of cytosine, either in G:C base-pairs or, more rapidly, in single stranded regions produced, for example, during replication. The resulting G:U mis-pairs/single stranded uracils are promutagenic and, unless repaired, give rise to G:C to A:T transitions in 50% of the progeny. The confinement of uracil recognition to polymerases of the archaeal domain is discussed in terms of the DNA repair pathways necessary for the elimination of uracil.

Effects of microsolvation on uracil and its radical anion: uracil(H2O)n (n = 1-5).

PubMed

Kim, Sunghwan; Schaefer, Henry F

2006-10-14

Microsolvation effects on the stabilities of uracil and its anion have been investigated by explicitly considering the structures of complexes of uracil with up to five water molecules at the B3LYPDZP++ level of theory. For all five systems, the global minimum of the neutral cluster has a different equilibrium geometry from that of the radical anion. Both the vertical detachment energy (VDE) and adiabatic electron affinity (AEA) of uracil are predicted to increase gradually with the number of hydrating molecules, qualitatively consistent with experimental results from a photodetachment-photoelectron spectroscopy study [J. Schiedt et al., Chem. Phys. 239, 511 (1998)]. The trend in the AEAs implies that while the conventional valence radical anion of uracil is only marginally bound in the gas phase, it will form a stable anion in aqueous solution. The gas-phase AEA of uracil (0.24 eV) was higher than that of thymine by 0.04 eV and this gap was not significantly affected by microsolvation. The largest AEA is that predicted for uracil(H2O)5, namely, 0.96 eV. The VDEs range from 0.76 to 1.78 eV.

Flowing Waters or Teeming Crowds: Mental Models of Electricity.

DTIC Science & Technology

1982-05-01

Andromeda nebula that’s like our solar system. The literal similarity statement (2) conveys that the target object (The Andromeda system) is composed of a... Andromeda system isn’t yellow and hot." if the star happened to be a white dwarf. To argue with the analogical statement ( t) by saying But the nucleus of

A Literature Survey on the Wetland Vegetation of Alaska.

DTIC Science & Technology

1982-08-01

and Rhynchospora and Eriophorum in the hollows. Ledum groenlandicum, Kalmia glauca, and Andromeda - polifolia are dominant heaths. Small shallow pools...forested conditions. Species found are: Vaccinium .!ljiinosum Eriohorum angustifolium V. vltis-idaea Coptis trifolia Andromeda polifolia Drosera...camschatcensis Sanquisorba sitchensis In later stages as moss peat accumulates, heath ( Andromeda polifolia, Ledum groenlandicum and Vaccinium vitis idaea

Hydrogen abstraction from deoxyribose by a neighboring 3'-uracil peroxyl radical.

PubMed

Schyman, Patric; Eriksson, Leif A; Laaksonen, Aatto

2009-05-07

Theoretical examination of the reactivity of the uracil-5-peroxyl radical when abstracting a hydrogen atom from a neighboring 5'-deoxyribose in 5'-ApU-5-peroxyl-3' has been performed using density functional theory with the MPWB1K functional. Halogenated uracils are often used as radiosensitizers in DNA since the reactive uracil-5-yl radical is formed upon radiation and is known to create strand break and alkali-labile sites. Under aerobic conditions, such as in the cell, it has been proposed that the uracil-5-peroxyl radical is formed and would be the damaging agent. Our results show low reactivity for the uracil-5-peroxyl radical, determined by calculating the activation and reaction energies for the plausible hydrogen abstraction sites C1', C2', and C3' of the neighboring 5'-deoxyribose. These findings support the hypothesis that hydrogen abstraction primarily occurs by the uracil-5-yl radical, also under aerobic conditions, prior to formation of the peroxyl radical.

Diverse fates of uracilated HIV-1 DNA during infection of myeloid lineage cells.

PubMed

Hansen, Erik C; Ransom, Monica; Hesselberth, Jay R; Hosmane, Nina N; Capoferri, Adam A; Bruner, Katherine M; Pollack, Ross A; Zhang, Hao; Drummond, Michael Bradley; Siliciano, Janet M; Siliciano, Robert; Stivers, James T

2016-09-20

We report that a major subpopulation of monocyte-derived macrophages (MDMs) contains high levels of dUTP, which is incorporated into HIV-1 DNA during reverse transcription (U/A pairs), resulting in pre-integration restriction and post-integration mutagenesis. After entering the nucleus, uracilated viral DNA products are degraded by the uracil base excision repair (UBER) machinery with less than 1% of the uracilated DNA successfully integrating. Although uracilated proviral DNA showed few mutations, the viral genomic RNA was highly mutated, suggesting that errors occur during transcription. Viral DNA isolated from blood monocytes and alveolar macrophages (but not T cells) of drug-suppressed HIV-infected individuals also contained abundant uracils. The presence of viral uracils in short-lived monocytes suggests their recent infection through contact with virus producing cells in a tissue reservoir. These findings reveal new elements of a viral defense mechanism involving host UBER that may be relevant to the establishment and persistence of HIV-1 infection.

Bacterial-derived uracil as a modulator of mucosal immunity and gut-microbe homeostasis in Drosophila.

PubMed

Lee, Kyung-Ah; Kim, Sung-Hee; Kim, Eun-Kyoung; Ha, Eun-Mi; You, Hyejin; Kim, Boram; Kim, Min-Ji; Kwon, Youngjoo; Ryu, Ji-Hwan; Lee, Won-Jae

2013-05-09

All metazoan guts are subjected to immunologically unique conditions in which an efficient antimicrobial system operates to eliminate pathogens while tolerating symbiotic commensal microbiota. However, the molecular mechanisms controlling this process are only partially understood. Here, we show that bacterial-derived uracil acts as a ligand for dual oxidase (DUOX)-dependent reactive oxygen species generation in Drosophila gut and that the uracil production in bacteria causes inflammation in the gut. The acute and controlled uracil-induced immune response is required for efficient elimination of bacteria, intestinal cell repair, and host survival during infection of nonresident species. Among resident gut microbiota, uracil production is absent in symbionts, allowing harmonious colonization without DUOX activation, whereas uracil release from opportunistic pathobionts provokes chronic inflammation. These results reveal that bacteria with distinct abilities to activate uracil-induced gut inflammation, in terms of intensity and duration, act as critical factors that determine homeostasis or pathogenesis in gut-microbe interactions. Copyright © 2013 Elsevier Inc. All rights reserved.

ANDROMEDA XXVIII: A DWARF GALAXY MORE THAN 350 kpc FROM ANDROMEDA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Slater, Colin T.; Bell, Eric F.; Martin, Nicolas F.

We report the discovery of a new dwarf galaxy, Andromeda XXVIII, using data from the recently released Sloan Digital Sky Survey Data Release 8. The galaxy is a likely satellite of Andromeda, and, at a separation of 365{sup +17}{sub -1} kpc, would be one of the most distant of Andromeda's satellites. Its heliocentric distance is 650{sup +150}{sub -80} kpc, and analysis of its structure and luminosity shows that it has an absolute magnitude of M{sub V} = -8.5{sup +0.4}{sub -1.0} and half-light radius of r{sub h} = 210{sup +60}{sub -50} pc, similar to many other faint Local Group dwarfs. Withmore » presently available imaging we are unable to determine whether there is ongoing or recent star formation, which prevents us from classifying it as a dwarf spheroidal or a dwarf irregular.« less

Preliminary Study on Nematocyst Types and Venom Isolation of Cassiopea andromeda Forskål, 1775 (Scyphozoa, Cnidaria) from Turkey.

PubMed

Gülşahin, Nurçin

2016-01-01

Nematocyst types of Cassiopea andromeda were investigated. Medusae samples were taken from Güllük Bay, Muğla, Turkey. Nematocyst samples from oral arms of C. andromeda were observed on light microscope and photographed. Birhopaloid and a-isorhiza nematocyst types were found in C. andromeda. Moreover, it was seen that nematocyst sizes increased with increasing the bell diameters of the individuals. Also, the venom of the species was isolated and injected intramuscularly to Cyprinus carpio juveniles. Signs of partial paralysis, raking, and immobilized fins were observed in the juveniles consequently. Death was observed for the fishes which were 3-4 g in the range of weight. This study is a preliminary work on nematocysts and venom of C. andromeda. Further studies on neurotoxic effects of nematocyst venoms of this species should follow.

Recent results from DORIS II

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bloom, E.D.

1985-01-01

This report contains a brief review of recent results from the ARGUS and Crystal Ball experiments at DORIS II, concentrating on UPSILON(1S) and UPSILON(2S) spectroscopy with a short foray into ..gamma gamma.. physics. 18 refs., 10 figs.

Error-free versus mutagenic processing of genomic uracil--relevance to cancer.

PubMed

Krokan, Hans E; Sætrom, Pål; Aas, Per Arne; Pettersen, Henrik Sahlin; Kavli, Bodil; Slupphaug, Geir

2014-07-01

Genomic uracil is normally processed essentially error-free by base excision repair (BER), with mismatch repair (MMR) as an apparent backup for U:G mismatches. Nuclear uracil-DNA glycosylase UNG2 is the major enzyme initiating BER of uracil of U:A pairs as well as U:G mismatches. Deficiency in UNG2 results in several-fold increases in genomic uracil in mammalian cells. Thus, the alternative uracil-removing glycosylases, SMUG1, TDG and MBD4 cannot efficiently complement UNG2-deficiency. A major function of SMUG1 is probably to remove 5-hydroxymethyluracil from DNA with general back-up for UNG2 as a minor function. TDG and MBD4 remove deamination products U or T mismatched to G in CpG/mCpG contexts, but may have equally or more important functions in development, epigenetics and gene regulation. Genomic uracil was previously thought to arise only from spontaneous cytosine deamination and incorporation of dUMP, generating U:G mismatches and U:A pairs, respectively. However, the identification of activation-induced cytidine deaminase (AID) and other APOBEC family members as DNA-cytosine deaminases has spurred renewed interest in the processing of genomic uracil. Importantly, AID triggers the adaptive immune response involving error-prone processing of U:G mismatches, but also contributes to B-cell lymphomagenesis. Furthermore, mutational signatures in a substantial fraction of other human cancers are consistent with APOBEC-induced mutagenesis, with U:G mismatches as prime suspects. Mutations can be caused by replicative polymerases copying uracil in U:G mismatches, or by translesion polymerases that insert incorrect bases opposite abasic sites after uracil-removal. In addition, kataegis, localized hypermutations in one strand in the vicinity of genomic rearrangements, requires APOBEC protein, UNG2 and translesion polymerase REV1. What mechanisms govern error-free versus error prone processing of uracil in DNA remains unclear. In conclusion, genomic uracil is an essential intermediate in adaptive immunity and innate antiviral responses, but may also be a fundamental cause of a wide range of malignancies. Copyright © 2014 The Authors. Published by Elsevier B.V. All rights reserved.

The search for radio emission from exoplanets using LOFAR low-frequency beam-formed observations

NASA Astrophysics Data System (ADS)

Turner, Jake D.; Griessmeier, Jean-Mathias; Zarka, Philippe

2018-01-01

Detection of radio emission from exoplanets can provide information on the star-planet system that is very difficult or impossible to study otherwise, such as the planet’s magnetic field, magnetosphere, rotation period, orbit inclination, and star-planet interactions. Such a detection in the radio domain would open up a whole new field in the study of exoplanets, however, currently there are no confirmed detections of an exoplanet at radio frequencies. In this study, we discuss our ongoing observational campaign searching for exoplanetary radio emissions using beam-formed observations within the Low Band of the Low-Frequency Array (LOFAR). To date we have observed three exoplanets: 55 Cnc, Upsilon Andromedae, and Tau Boötis. These planets were selected according to theoretical predictions, which indicated them as among the best candidates for an observation. During the observations we usually recorded three beams simultaneously, one on the exoplanet and two on patches of nearby “empty” sky. An automatic pipeline was created to automatically find RFI, calibrate the data due to instrumental effects, and to search for emission in the exoplanet beam. Additionally, we observed Jupiter with LOFAR with the same exact observational setup as the exoplanet observations. The main goals of the Jupiter observations are to train the detection algorithm and to calculate upper limits in the case of a non-detection. Data analysis is currently ongoing. Conclusions reached at the time of the meeting, about detection of or upper limit to the planetary signal, will be presented.

LOFAR Searches for Radio Exoplanets

NASA Astrophysics Data System (ADS)

Turner, Jake; Griessmeier, Jean-Mathias; Zarka, Philippe; Vasylieva, Iaroslavna

2018-06-01

Detection of radio emission from exoplanets can provide information on the star-planet system that is very difficult or impossible to study otherwise, such as the planet’s magnetic field, magnetosphere, rotation period, orbit inclination, and star-planet interactions. Such a detection in the radio domain would open up a whole new field in the study of exoplanets, however, currently there are no confirmed detections of an exoplanet at radio frequencies. In this study, we discuss our ongoing observational campaign searching for exoplanetary radio emissions using beam-formed observations within the Low Band of the Low-Frequency Array (LOFAR). To date we have observed three exoplanets: 55 Cnc, Upsilon Andromedae, and Tau Boötis. These planets were selected according to theoretical predictions, which indicated them as among the best candidates for an observation. During the observations we usually recorded three beams simultaneously, one on the exoplanet and two on patches of nearby “empty” sky. An automatic pipeline was created to automatically find RFI, calibrate the data due to instrumental effects, and to search for emission in the exoplanet beam. Additionally, we observed Jupiter with LOFAR with the same exact observational setup as the exoplanet observations. The main goals of the Jupiter observations are to train the detection algorithm and to calculate upper limits in the case of a non-detection. Data analysis is currently ongoing. Conclusions reached at the time of the meeting, about detection of or upper limit to the planetary signal, will be presented.

Physiologically based pharmacokinetic modelling of the three-step metabolism of pyrimidine using C-uracil as an in vivo probe.

PubMed

Ito, Suminobu; Kawamura, Takeshi; Inada, Makoto; Inoue, Yoshiharu; Hirao, Yukihiro; Koga, Toshihisa; Kunizaki, Jun-ichi; Shimizu, Takefumi; Sato, Hitoshi

2005-12-01

Approximately 80% of uracil is excreted as beta-alanine, ammonia and CO2 via three sequential reactions. The activity of the first enzyme in this scheme, dihydropyrimidine dehydrogenase (DPD), is reported to be the key determinant of the cytotoxicity and side-effects of 5-fluorouracil. The aim of the present study was to re-evaluate the pharmacokinetics of uracil and its metabolites using a sensitive assay and based on a newly developed, physiologically based pharmacokinetic (PBPK) model. [2-(13)C]Uracil was orally administrated to 12 healthy males at escalating doses of 50, 100 and 200 mg, and the concentrations of [2-(13)C]uracil, [2-(13)C]5,6-dihydrouracil and beta-ureidopropionic acid (ureido-(13)C) in plasma and urine and (13)CO2 in breath were measured by liquid chromatography-tandem mass spectrometry and gas chromatograph-isotope ratio mass spectrometry, respectively. The pharmacokinetics of [2-(13)C]uracil were nonlinear. The elimination half-life of [2-(13)C]5,6-dihydrouracil was 0.9-1.4 h, whereas that of [2-(13)C]uracil was 0.2-0.3 h. The AUC of [2-(13)C]5,6-dihydrouracil was 1.9-3.1 times greater than that of [2-(13)C]uracil, whereas that of ureido-(13)C was 0.13-0.23 times smaller. The pharmacokinetics of (13)CO2 in expired air were linear and the recovery of (13)CO2 was approximately 80% of the dose. The renal clearance of [2-(13)C]uracil was negligible. A PBPK model to describe (13)CO2 exhalation after orally administered [2-(13)C]uracil was successfully developed. Using [2-(13)C]uracil as a probe, this model could be useful in identifying DPD-deficient patients at risk of 5-fluorouracil toxicity.

DNA translocation by human uracil DNA glycosylase: the case of single-stranded DNA and clustered uracils.

PubMed

Schonhoft, Joseph D; Stivers, James T

2013-04-16

Human uracil DNA glycosylase (hUNG) plays a central role in DNA repair and programmed mutagenesis of Ig genes, requiring it to act on sparsely or densely spaced uracil bases located in a variety of contexts, including U/A and U/G base pairs, and potentially uracils within single-stranded DNA (ssDNA). An interesting question is whether the facilitated search mode of hUNG, which includes both DNA sliding and hopping, changes in these different contexts. Here we find that hUNG uses an enhanced local search mode when it acts on uracils in ssDNA, and also, in a context where uracils are densely clustered in duplex DNA. In the context of ssDNA, hUNG performs an enhanced local search by sliding with a mean sliding length larger than that of double-stranded DNA (dsDNA). In the context of duplex DNA, insertion of high-affinity abasic product sites between two uracil lesions serves to significantly extend the apparent sliding length on dsDNA from 4 to 20 bp and, in some cases, leads to directionally biased 3' → 5' sliding. The presence of intervening abasic product sites mimics the situation where hUNG acts iteratively on densely spaced uracils. The findings suggest that intervening product sites serve to increase the amount of time the enzyme remains associated with DNA as compared to nonspecific DNA, which in turn increases the likelihood of sliding as opposed to falling off the DNA. These findings illustrate how the search mechanism of hUNG is not predetermined but, instead, depends on the context in which the uracils are located.

Imaging the Oxygen-Rich Disk Toward the Silicate Carbon Star EU Andromedae

DTIC Science & Technology

2007-12-01

star EU Andromedae K. Ohnaka1 and D. A. Boboltz2 1 Max-Planck-Institut für Radioastronomie, Auf dem Hügel 69, 53121 Bonn, Germany e-mail: kohnaka...Imaging the Oxygen-Rich Disk Toward the Silicate Carbon Star EU Andromedae 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR

The wind of EG Andromedae is not dust driven

NASA Technical Reports Server (NTRS)

Van Buren, Dave; Dgani, Ruth; Noriega-Crespo, Alberto

1994-01-01

The symbiotic star EG Andromedae has recently been the subject of several studies investigating its wind properties. Late-type giants are usually considered to have winds driven by radiation pressure on dust. Indeed, the derived wind velocity for EG Andromedae is consistent with this model. We point out here that there is no appreciable dust opacity in the wind of EG Andromedae using constraints on extinction limits from International Ultraviolet Explorer (IUE) and far infrared fluxes from Infrared Astronomy Satellite (IRAS). An alternate mechanism must operate in this star. We suggest that the wind can be driven by radiation pressure on molecular lines.

Separated Fringe Packet Observations with the CHARA Array. II. Omega Andromeda, HD 178911, and Xi Cephei

DTIC Science & Technology

2014-07-31

Printed in the U.S.A. SEPARATED FRINGE PACKET OBSERVATIONS WITH THE CHARA ARRAY. II. ω ANDROMEDA , HD 178911, AND ξ CEPHEI C. D. Farrington1, T. A...calibration star is not needed, and the SFPs can provide an accurate vector separation. In this paper, we apply the SFP approach to ω Andromeda , HD 178911...and 0.860 ± 0.051M and 39.54 ± 1.85 mas for ω Andromeda , for HD 178911 of 0.802 ± 0.055M and 0.622 ± 0.053M with 28.26 ± 1.70 mas, and masses of

The Prolate Dark Matter Halo of the Andromeda Galaxy

NASA Astrophysics Data System (ADS)

Hayashi, Kohei; Chiba, Masashi

2014-07-01

We present new limits on the global shape of the dark matter halo in the Andromeda galaxy using and generalizing non-spherical mass models developed by Hayashi & Chiba and compare our results with theoretical predictions of cold dark matter (CDM) models. This is motivated by the fact that CDM models predict non-spherical virialized dark halos, which reflect the process of mass assembly in the galactic scale. Applying our models to the latest kinematic data of globular clusters and dwarf spheroidal galaxies in the Andromeda halo, we find that the most plausible cases for Andromeda yield a prolate shape for its dark halo, irrespective of assumed density profiles. We also find that this prolate dark halo in Andromeda is consistent with theoretical predictions in which the satellites are distributed anisotropically and preferentially located along major axes of their host halos. It is a reflection of the intimate connection between galactic dark matter halos and the cosmic web. Therefore, our result is profound in understanding internal dynamics of halo tracers in Andromeda, such as orbital evolutions of tidal stellar streams, which play important roles in extracting the abundance of CDM subhalos through their dynamical effects on stream structures.

The prolate dark matter halo of the Andromeda galaxy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hayashi, Kohei; Chiba, Masashi, E-mail: k.hayasi@astr.tohoku.ac.jp, E-mail: chiba@astr.tohoku.ac.jp

We present new limits on the global shape of the dark matter halo in the Andromeda galaxy using and generalizing non-spherical mass models developed by Hayashi and Chiba and compare our results with theoretical predictions of cold dark matter (CDM) models. This is motivated by the fact that CDM models predict non-spherical virialized dark halos, which reflect the process of mass assembly in the galactic scale. Applying our models to the latest kinematic data of globular clusters and dwarf spheroidal galaxies in the Andromeda halo, we find that the most plausible cases for Andromeda yield a prolate shape for itsmore » dark halo, irrespective of assumed density profiles. We also find that this prolate dark halo in Andromeda is consistent with theoretical predictions in which the satellites are distributed anisotropically and preferentially located along major axes of their host halos. It is a reflection of the intimate connection between galactic dark matter halos and the cosmic web. Therefore, our result is profound in understanding internal dynamics of halo tracers in Andromeda, such as orbital evolutions of tidal stellar streams, which play important roles in extracting the abundance of CDM subhalos through their dynamical effects on stream structures.« less

Electronic transition moment for the B(2)II-X(2)II system of NO

NASA Technical Reports Server (NTRS)

Luque, Jorge; Crosley, David R.

1995-01-01

The upsilon' = 0-3 and 7 vibrational levels of the NO B(2)II state have been selectively excited by laser radiation. The fluorescence spectra together with calculated Franck-Condon factors and r-centroids have been used to evaluate the electronic transition moment. The results for upsilon' = 0-3 are in very good agreement with recent chemiluminescence measurements and ab initio calculations. Furthermore, the data from upsilon' = 7 have been used to extend the empirically determined moment to limits 1.23 and 1.78 A, improving agreement with experimentally determined lifetimes.

Realization of Cohen-Glashow very special relativity on noncommutative space-time.

PubMed

Sheikh-Jabbari, M M; Tureanu, A

2008-12-31

We show that the Cohen-Glashow very special relativity (VSR) theory [A. G. Cohen and S. L. Glashow, Phys. Rev. Lett. 97, 021601 (2006)] can be realized as the part of the Poincaré symmetry preserved on a noncommutative Moyal plane with lightlike noncommutativity. Moreover, we show that the three subgroups relevant to VSR can also be realized in the noncommutative space-time setting. For all of these three cases, the noncommutativity parameter theta(mu upsilon) should be lightlike (theta(mu upsilon) theta mu upsilon = 0). We discuss some physical implications of this realization of the Cohen-Glashow VSR.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grossman, L.

Two uracil photoproducts are formed when polyuridylic acid (poly U) is irradiated with ultraviolet light. A molecule of water may add at the 4,-5 double bond of the uracil moieties as a result of irradiation and these may be reconverted to uracil by base-catalyzed dehydration. The other photoproduct formed is a uracil-uracil dimer, which reverts to uracil by reirradiation at lower wavelengths of ultraviolet light. The effects of irradiated poly U were studied iu the amino acid incorporating system in which dehydration and photoreversal of the irradiated poly U separated some of the ultraviolet effects. It was concluded that themore » water adduct is responsible for the coding transition of C 14-phenylalanine to C 14-serine, and the formation of dimer results in the loss of the incorporation of C 14-phenylalanine, which is not replaced by any other amino acid.« less

Studies of molecular physics in sodium-potassium: An analysis of the 4(3)Sigma+ state and interactions between the 2(A)(1)Sigma+ and 1(b)(3)Pi states

NASA Astrophysics Data System (ADS)

Burns, Patrick

2004-12-01

In this dissertation we report the results of three experiments designed to provide new information on the structure and interactions of the NaK molecule. Specifically these experiments investigate 2(A)1Sigma +(upsilonA, J) + M → 1(b)3 pi0(upsilonb, J) + M collisional excitation transfers (where M is a collision partner), hyperfine structure of the NaK 1(b)3pi and 1(b)3pi0 ˜ 2(A)1Sigma+ spin-orbit interactions, and the structure and spectra of the NaK 43Sigma+ state, respectively. In this first experiment, populations of collisionally populated levels were recorded near the NaK 1(b)3pi0(upsilon =18, J = 44) ˜ 2(A)1Sigma+ (upsilon = 20, J = 44) center of spin-orbit perturbation. Our data indicate that population is transferred from the pumped level, 2(A) 1Sigma+(upsilon = 20, J = 49), directly to the surrounding "daughter" levels [1(b)3Sigma 0(upsilon =18, J = 45--48) and 2(A)1Sigma +(upsilon = 20, J = 45--48)]. The relative populations of the daughter levels appear anomalous, as their populations do not monotonically decrease for levels further away in energy from the pumped level. We have measured the hyperfine structure of mutually perturbing ro-vibrational levels of the 1(b)3pi0 and 2(A)1Sigma + states of the NaK molecule, using the PFOODR method with co-propagating lasers. Unperturbed 1(b)3pi0 levels are split into four hyperfine components by the Fermi contact interaction b FI·S. Mixing between the 1(b)3pi0 and 2(A)1Sigma + levels imparts hyperfine structure to the nominally singlet component, and reduces the hyperfine splitting of the nominally triplet component, of the perturbed levels. We determined a value for the Fermi constant, bF= (0.00989 +/- 0.00027) cm-1, and the magnitude of the electronic part of the 1(b)3pi 0 ˜ 2(A)1Sigma+ spin-orbit coupling, |Hel| = (15.65 +/- 0.14) cm-1 , from an analysis of the measured hyperfine splittings of the mixed singlet-triplet levels. High-resolution spectra have been observed for numerous vibrational-rotational levels (upsilon, N) of the 43Sigma + state of NaK. A potential curve was obtained from the data using the inverse perturbation approximation method. Measured bound-free emission, 43Sigma+ → 1(a)3Sigma +, was used to determine both the absolute vibrational numbering and the transition dipole moment function M(R). Each (upsilon, N) level is typically split into three sets of sublevels by the Fermi contact interaction bFI·S. Further splitting (of order 0.004 cm-1) has been attributed to the spin-rotation interaction gammaN·S. The values of bF that fit the data best are ˜(0.99 +/- 0.04) x 10-2 cm-1, with weak dependence on upsilon. The best fit values of gamma are in the range 1--6 x 10-4 cm-1 and depend strongly on upsilon.

Sorption of organic molecules on surfaces of a microporous polymer adsorbent modified with different quantities of uracil

NASA Astrophysics Data System (ADS)

Gus'kov, V. Yu.; Ganieva, A. G.; Kudasheva, F. Kh.

2016-11-01

The sorption of organic molecules on the surfaces of a number of adsorbents based on a microporous copolymer of styrene and divinylbenzene modified with different quantities of uracil is studied by means of inverse gas chromatography at infinite dilution. Samples containing 10-6, 10-5, 10-4, 10-3, 10-2, and 0.5 × 10‒1 weight parts of uracil (the pC of uracil ranges from 1.3 to 6) are studied. The contributions from different intermolecular interactions to the Helmholtz energy of sorption are calculated via the linear free energy relationship. It is found that as the concentration of uracil on the surface of the polymer adsorbent grows, the contributions from different intermolecular interactions and the conventional polarity of the surface have a bend at pC = 3, due probably to the formation of a supramolecular structure of uracil. Based on the obtained results, it is concluded that the formation of the supramolecular structure of uracil on the surface of the polymer adsorbent starts when pC < 3.

Diverse fates of uracilated HIV-1 DNA during infection of myeloid lineage cells

PubMed Central

Hansen, Erik C; Ransom, Monica; Hesselberth, Jay R; Hosmane, Nina N; Capoferri, Adam A; Bruner, Katherine M; Pollack, Ross A; Zhang, Hao; Drummond, Michael Bradley; Siliciano, Janet M; Siliciano, Robert; Stivers, James T

2016-01-01

We report that a major subpopulation of monocyte-derived macrophages (MDMs) contains high levels of dUTP, which is incorporated into HIV-1 DNA during reverse transcription (U/A pairs), resulting in pre-integration restriction and post-integration mutagenesis. After entering the nucleus, uracilated viral DNA products are degraded by the uracil base excision repair (UBER) machinery with less than 1% of the uracilated DNA successfully integrating. Although uracilated proviral DNA showed few mutations, the viral genomic RNA was highly mutated, suggesting that errors occur during transcription. Viral DNA isolated from blood monocytes and alveolar macrophages (but not T cells) of drug-suppressed HIV-infected individuals also contained abundant uracils. The presence of viral uracils in short-lived monocytes suggests their recent infection through contact with virus producing cells in a tissue reservoir. These findings reveal new elements of a viral defense mechanism involving host UBER that may be relevant to the establishment and persistence of HIV-1 infection. DOI: http://dx.doi.org/10.7554/eLife.18447.001 PMID:27644592

Geophysical searches for three-neutrino oscillations

NASA Technical Reports Server (NTRS)

Cudell, J. R.; Gaisser, T. K.

1985-01-01

The possibilities of using cosmic ray induced neutrinos to detect oscillations in deep underground experiments were considered. The matter effects are nonnegligible in the two neutrino case, they reduce a mixing angle of 45 deg to 7.5 deg for 1 GeV neutrinos of squared mass difference 10/4 eV59 going through the Earth making the oscillation totally unobservable. They produce a natural oscillation length of about 6000 km in the case of massless neutrinos. Adding a third neutrino flavor considerably modifies the oscillation pattern and suggests that scales down to 5 x 10/5 eV could be observed even when we take into account matter effects and the electron contribution to the incoming flux. The effect of matter on the probability curves for different cases are shown by varying the masses and the mixing matrix. The ratio upward upsilon + upsilon/downward upsilon + upsilon as a function of the zenith angle at Cleveland, neglecting angular smearing and energy threshold effects is predicted.

1H-1,2,3-triazole-tethered uracil-ferrocene and uracil-ferrocenylchalcone conjugates: Synthesis and antitubercular evaluation.

PubMed

Singh, Amandeep; Biot, Christophe; Viljoen, Albertus; Dupont, Christian; Kremer, Laurent; Kumar, Kewal; Kumar, Vipan

2017-06-01

Copper-catalyzed azide-alkyne [3 + 2] cycloaddition has been utilized for preparing a series of 1H-1,2,3-triazoles with the purpose of probing structure-activity relationships among a uracil-ferrocene-triazole conjugate family. The antitubercular evaluation studies revealed an improvement in activity with the introduction of a ferrocene nucleus among N-alkylazido-uracil precursors, with a preference for a bromo-substituent along with moderate chain lengths of n = 2-6. The reported protocol is a successful approach for integrating uracil-ferrocene-chalcone functionalities tethered via 1H-1,2,3-triazole rings with apparent physicochemical stability. © 2016 John Wiley & Sons A/S.

VizieR Online Data Catalog: Disk of {upsilon} Sgr (Netolicky+, 2009)

NASA Astrophysics Data System (ADS)

Netolicky, M.; Bonneau, D.; Chesneau, O.; Harmanec, P.; Koubsky, P.; Mourard, D.; Stee, P.

2010-01-01

The aim of this paper is to determine the properties of the dusty environment of the hydrogen-deficient binary system upsilon Sgr, whose binary properties and other characteristics are poorly known. We obtained the first mid-IR interferometric observations of upsilon Sgr using the instrument MIDI of the VLTI used with different pairs of 1.8m and 8m telescopes. The calibrated visibilities, the N band spectrum, and the SED were compared with disk models computed with the MC3D code to determine the geometry and chemical composition of the envelope. ************************************************************************** * * * Sorry, but the author(s) never supplied the tabular material * * announced in the paper * * * **************************************************************************

Nucleon decay and atmospheric neutrinos in the Mont Blanc experiment

NASA Technical Reports Server (NTRS)

Battistoni, G.; Bellotti, E.; Bologne, G.; Campana, P.; Castagnoli, C.; Chiarella, V.; Ciocio, A.; Cundy, D. C.; Dettorepiazzoli, B.; Fiorini, E.

1985-01-01

In the NUSEX experiment, during 2.8 years of operation, 31 fully contained events have been collected; 3 among them are nucleon decay candidates, while the others have been attributed to upsilon interactions. Limits on nucleon lifetime and determinations of upsilon interaction rates are presented.

Effects of microsolvation on uracil and its radical anion: Uracil.(H2O)n (n=1-5)

NASA Astrophysics Data System (ADS)

Kim, Sunghwan; Schaefer, Henry F.

2006-10-01

Microsolvation effects on the stabilities of uracil and its anion have been investigated by explicitly considering the structures of complexes of uracil with up to five water molecules at the B3LYP /DZP++ level of theory. For all five systems, the global minimum of the neutral cluster has a different equilibrium geometry from that of the radical anion. Both the vertical detachment energy (VDE) and adiabatic electron affinity (AEA) of uracil are predicted to increase gradually with the number of hydrating molecules, qualitatively consistent with experimental results from a photodetachment-photoelectron spectroscopy study [J. Schiedt et al., Chem. Phys. 239, 511 (1998)]. The trend in the AEAs implies that while the conventional valence radical anion of uracil is only marginally bound in the gas phase, it will form a stable anion in aqueous solution. The gas-phase AEA of uracil (0.24eV) was higher than that of thymine by 0.04eV and this gap was not significantly affected by microsolvation. The largest AEA is that predicted for uracil•(H2O)5, namely, 0.96eV. The VDEs range from 0.76to1.78eV.

Prebiotic synthesis of 5-substituted uracils: a bridge between the RNA world and the DNA-protein world.

PubMed

Robertson, M P; Miller, S L

1995-05-05

Under prebiotic conditions, formaldehyde adds to uracil at the C-5 position to produce 5-hydroxymethyluracil with favorable rates and equilibria. Hydroxymethyluracil adds a variety of nucleophiles, such as ammonia, glycine, guanidine, hydrogen sulfide, hydrogen cyanide, imidazole, indole, and phenol, to give 5-substituted uracils with the side chains of most of the 20 amino acids in proteins. These reactions are sufficiently robust that, if uracil had been present on the primitive Earth, then these substituted uracils would also have been present. The ribozymes of the RNA world would have included many of the functional groups found in proteins today, and their catalytic activities may have been considerably greater than presently assumed.

Uracil in formic acid hydrolysates of deoxyribonucleic acid

PubMed Central

Schein, Arnold H.

1966-01-01

1. When DNA is hydrolysed with formic acid for 30min. at 175° and the hydrolysate is chromatographed on paper with propan-2-ol–2n-hydrochloric acid, in addition to expected ultraviolet-absorbing spots corresponding to guanine, adenine, cytosine and thymine, an ultraviolet-absorbing region with RF similar to that of uracil can be detected. Uracil was separated from this region and identified by its spectra in acid and alkali, and by its RF in several solvent systems. 2. Cytosine, deoxyribocytidine and deoxyribocytidylic acid similarly treated with formic acid all yielded uracil, as did a mixture of deoxyribonucleotides. 3. Approx. 4% of deoxyribonucleotide cytosine was converted into uracil by the formic acid treatment. ImagesFig. 1. PMID:5949371

Prebiotic synthesis of 5-substituted uracils: a bridge between the RNA world and the DNA-protein world

NASA Technical Reports Server (NTRS)

Robertson, M. P.; Miller, S. L.

1995-01-01

Under prebiotic conditions, formaldehyde adds to uracil at the C-5 position to produce 5-hydroxymethyluracil with favorable rates and equilibria. Hydroxymethyluracil adds a variety of nucleophiles, such as ammonia, glycine, guanidine, hydrogen sulfide, hydrogen cyanide, imidazole, indole, and phenol, to give 5-substituted uracils with the side chains of most of the 20 amino acids in proteins. These reactions are sufficiently robust that, if uracil had been present on the primitive Earth, then these substituted uracils would also have been present. The ribozymes of the RNA world would have included many of the functional groups found in proteins today, and their catalytic activities may have been considerably greater than presently assumed.

DIFFERENTIAL ROLE OF BASE EXCISION REPAIR PROTEINS IN MEDIATING CISPLATIN CYTOTOXICITY

PubMed Central

Sawant, Akshada; Floyd, Ashley M.; Dangeti, Mohan; Lei, Wen; Sobol, Robert W.; Patrick, Steve M.

2017-01-01

Interstrand crosslinks (ICLs) are covalent lesions formed by cisplatin. The mechanism for the processing and removal of ICLs by DNA repair proteins involves nucleotide excision repair (NER), homologous recombination (HR) and fanconi anemia (FA) pathways. In this report, we monitored the processing of a flanking uracil adjacent to a cisplatin ICL by the proteins involved in the base excision repair (BER) pathway. Using a combination of extracts, purified proteins, inhibitors, functional assays and cell culture studies, we determined the specific BER proteins required for processing a DNA substrate with a uracil adjacent to a cisplatin ICL. Uracil DNA glycosylase (UNG) is the primary glycosylase responsible for the removal of uracils adjacent to cisplatin ICLs, whereas other uracil glycosylases can process uracils in the context of undamaged DNA. Repair of the uracil adjacent to cisplatin ICLs proceeds through the classical BER pathway, highlighting the importance of specific proteins in this redundant pathway. Removal of uracil is followed by the generation of an abasic site and subsequent cleavage by AP endonuclease 1 (APE1). Inhibition of either the repair or redox domain of APE1 gives rise to cisplatin resistance. Inhibition of the lyase domain of Polymerase β (Polβ) does not influence cisplatin cytotoxicity. In addition, lack of XRCC1 leads to increased DNA damage and results in increased cisplatin cytotoxicity. Our results indicate that BER activation at cisplatin ICLs influences crosslink repair and modulates cisplatin cytotoxicity via specific UNG, APE1 and Polβ polymerase functions. PMID:28110804

PAndAS' CUBS: Discovery of Two New Dwarf Galaxies in the Surroundings of the Andromeda and Triangulum Galaxies

NASA Astrophysics Data System (ADS)

Martin, Nicolas F.; McConnachie, Alan W.; Irwin, Mike; Widrow, Lawrence M.; Ferguson, Annette M. N.; Ibata, Rodrigo A.; Dubinski, John; Babul, Arif; Chapman, Scott; Fardal, Mark; Lewis, Geraint F.; Navarro, Julio; Rich, R. Michael

2009-11-01

We present the discovery of two new dwarf galaxies, Andromeda XXI and Andromeda XXII, located in the surroundings of the Andromeda and Triangulum galaxies (M31 and M33). These discoveries stem from the first year data of the Pan-Andromeda Archaeological Survey, a photometric survey of the M31/M33 group conducted with the Megaprime/MegaCam Wide-Field Camera mounted on the Canada-France-Hawaii Telescope. Both satellites appear as spatial overdensities of stars which, when plotted in a color-magnitude diagram, follow metal-poor, [Fe/H] = -1.8, red giant branches at the distance of M31/M33. Andromeda XXI is a moderately bright dwarf galaxy (MV = -9.9 ± 0.6), albeit with low surface brightness, emphasizing again that many relatively luminous M31 satellites still remain to be discovered. It is also a large satellite, with a half-light radius close to 1 kpc, making it the fourth largest Local Group dwarf spheroidal galaxy after the recently discovered Andromeda XIX, Andromeda II, and Sagittarius around the Milky Way, and supports the trend that M31 satellites are larger than their Milky Way counterparts. Andromeda XXII is much fainter (MV = -6.5 ± 0.8) and lies a lot closer in projection to M33 than it does to M31 (42 versus 224 kpc), suggesting that it could be the first Triangulum satellite to be discovered. Although this is a very exciting possibility in the context of a past interaction of M33 with M31 and the fate of its satellite system, a confirmation will have to await a good distance estimate to confirm its physical proximity to M33. Along with the dwarf galaxies found in previous surveys of the M31 surroundings, these two new satellites bring the number of dwarf spheroidal galaxies in this region to 20. Based on observations obtained with MegaPrime/MegaCam, a joint project of CFHT and CEA/DAPNIA, at the Canada-France-Hawaii Telescope (CFHT) which is operated by the National Research Council (NRC) of Canada, the Institute National des Sciences de l'Univers of the Centre National de la Recherche Scientifique of France, and the University of Hawaii.

Search for lepton flavor violation in upsilon decays.

PubMed

Love, W; Savinov, V; Lopez, A; Mehrabyan, S; Mendez, H; Ramirez, J; Huang, G S; Miller, D H; Pavlunin, V; Sanghi, B; Shipsey, I P J; Xin, B; Adams, G S; Anderson, M; Cummings, J P; Danko, I; Hu, D; Moziak, B; Napolitano, J; He, Q; Insler, J; Muramatsu, H; Park, C S; Thorndike, E H; Yang, F; Artuso, M; Blusk, S; Horwitz, N; Khalil, S; Li, J; Menaa, N; Mountain, R; Nisar, S; Randrianarivony, K; Sia, R; Skwarnicki, T; Stone, S; Wang, J C; Bonvicini, G; Cinabro, D; Dubrovin, M; Lincoln, A; Asner, D M; Edwards, K W; Naik, P; Briere, R A; Ferguson, T; Tatishvili, G; Vogel, H; Watkins, M E; Rosner, J L; Adam, N E; Alexander, J P; Berkelman, K; Cassel, D G; Duboscq, J E; Ehrlich, R; Fields, L; Galik, R S; Gibbons, L; Gray, R; Gray, S W; Hartill, D L; Heltsley, B K; Hertz, D; Jones, C D; Kandaswamy, J; Kreinick, D L; Kuznetsov, V E; Mahlke-Krüger, H; Mohapatra, D; Onyisi, P U E; Patterson, J R; Peterson, D; Pivarski, J; Riley, D; Ryd, A; Sadoff, A J; Schwarthoff, H; Shi, X; Stroiney, S; Sun, W M; Wilksen, T; Athar, S B; Patel, R; Yelton, J; Rubin, P; Cawlfield, C; Eisenstein, B I; Karliner, I; Kim, D; Lowrey, N; Selen, M; White, E J; Wiss, J; Mitchell, R E; Shepherd, M R; Besson, D; Pedlar, T K; Cronin-Hennessy, D; Gao, K Y; Hietala, J; Kubota, Y; Klein, T; Lang, B W; Poling, R; Scott, A W; Smith, A; Zweber, P; Dobbs, S; Metreveli, Z; Seth, K K; Tomaradze, A; Ecklund, K M

2008-11-14

In this Letter, we describe a search for lepton flavor violation (LFV) in the bottomonium system. We search for leptonic decays Upsilon(nS)-->mutau (n=1, 2, and 3) using the data collected with the CLEO III detector. We identify the tau lepton using its leptonic decay nu_{tau}nu[over ]_{e}e and utilize multidimensional likelihood fitting with probability density function shapes measured from independent data samples. We report our estimates of 95% C.L. upper limits on LFV branching fractions of Upsilon mesons. We interpret our results in terms of the exclusion plot for the energy scale of a hypothetical new interaction versus its effective LFV coupling in the framework of effective field theory.

The star formation history in the Andromeda halo

NASA Astrophysics Data System (ADS)

Brown, Thomas M.

I present the preliminary results of a program to measure the star formation history in the halo of the Andromeda galaxy. Using the Advanced Camera for Surveys (ACS) on the Hubble Space Telescope, we obtained the deepest optical images of the sky to date, in a field on the southeast minor axis of Andromeda, 51' (11 kpc) from the nucleus. The resulting color-magnitude diagram (CMD) contains approximately 300,000 stars and extends more than 1.5 mag below the main sequence turnoff, with 50% completeness at V = 30.7 mag. We interpret this CMD using comparisons to ACS observations of five Galactic globular clusters through the same filters, and through χ2-fitting to a finely-spaced grid of calibrated stellar population models. We find evidence for a major (~30%) intermediate-age (6-8 Gyr) metal-rich ([Fe/H])>-0.5) population in the Andromeda halo, along with a significant old metal-poor population akin to that in the Milky Way halo. The large spread in ages suggests that the Andromeda halo formed as a result of a more violent merging history than that in our own Milky Way.

Detecting Reddening by Dust for Star Clusters in the Andromeda Galaxy

NASA Astrophysics Data System (ADS)

Cohn, Amy; Dorman, C.; Guhathakurta, P.; PHAT Collaboration

2014-01-01

We have developed a technique to detect reddening by interstellar dust of star clusters in the Andromeda Galaxy, using Hubble Space Telescope ACS/WFC imaging in B and I and spectroscopic data from Keck II DEIMOS spectrograph. These data are from the Panchromatic Hubble Andromeda Treasury (PHAT) and Spectroscopic and Panchromatic Landscape of Andromeda's Stellar Halo (SPLASH) surveys. We compared the observed color indices from the PHAT data to the intrinsic color indices quantitatively inferred from a chi-squared goodness of fit comparison between the SPLASH data and a library of template spectra, to detect reddening. The spectral comparison utilizes the strength of the titanium oxide bands. This technique will be applied to an additional 150 star clusters, in Andromeda, to determine the amount of reddening they have experienced. It will also be used as part of the process of correcting for the reddening, developing a reddening law, and learning more about the physical properties of the dust. This research was carried out under the auspices of UCSC's Science Internship Program. We thank the National Aeronautics and Space Administration and the National Science Foundation for funding support.

Purification, crystallization and preliminary X-ray analysis of uracil-DNA glycosylase from Sulfolobus tokodaii strain 7

PubMed Central

Kawai, Akito; Higuchi, Shigesada; Tsunoda, Masaru; Nakamura, Kazuo T.; Miyamoto, Shuichi

2012-01-01

Uracil-DNA glycosylase (UDG) specifically removes uracil from DNA by catalyzing hydrolysis of the N-glycosidic bond, thereby initiating the base-excision repair pathway. Although a number of UDG structures have been determined, the structure of archaeal UDG remains unknown. In this study, a deletion mutant of UDG isolated from Sulfolobus tokodaii strain 7 (stoUDGΔ) and stoUDGΔ complexed with uracil were crystallized and analyzed by X-ray crystallography. The crystals were found to belong to the orthorhombic space group P212121, with unit-cell parameters a = 52.2, b = 52.3, c = 74.7 Å and a = 52.1, b = 52.2, c = 74.1 Å for apo stoUDGΔ and stoUDGΔ complexed with uracil, respectively. PMID:22949205

Improved Limits on Gamma-Ray Burst Repetition from BATSE

NASA Technical Reports Server (NTRS)

Tegmark, Max; Hartmann, Dieter H.; Briggs, Michael S.; Hakkila, Jon; Meegan, Charles A.

1996-01-01

We tighten previous upper limits on gamma-ray burst repetition by analyzing the angular power spectrum of the BATSE 3B catalog of 1122 bursts. At 95% confidence, we find that no more than 2% of all observed bursts can be labeled as repeaters, even if no sources are observed to repeat more than once. If a fraction f of all observed bursts can be labeled as repeaters that are observed to burst upsilon times each, then all models with (upsilon - 1)f greater than or equal to 0.05 are ruled out at 99% confidence, as compared to the best previous 99% limit (upsilon - 1)f greater than or equal to 0.27. At 95% confidence, our new limit is (upsilon - 1)f greater than or equal to 0.02. Thus, even a cluster of six events from a single source would have caused excess power above that present in the 3B catalog. We conclude that the current BATSE data are consistent with no repetition of classical gamma-ray bursts and that any repeater model is severely constrained by the near-perfect isotropy of their angular distribution.

Observational constraints on disc galaxy formation

NASA Astrophysics Data System (ADS)

Syer, D.; Mao, Shude; Mo, H. J.

1999-04-01

We use data from the literature to constrain theoretical models of galaxy formation. We show how to calculate the dimensionless spin parameter lambda of the haloes of disc galaxies, and we compare the distribution of lambda with that observed in cosmological N-body simulations. The agreement is excellent, which provides strong support for the hierarchical picture of galaxy formation. Assuming only that the radial surface density distribution of discs is exponential, we estimate crudely the maximum-disc mass-to-light ratio in the I band, and obtain < Upsilon_I> <~ 3.56 h, for a Hubble constant of 100 h km s^-1 Mpc^-1. We discuss this result and its limitations in relation to other independent determinations of Upsilon_I. We also define a dimensionless form of the Tully-Fisher relation, and use it to derive a value of the baryon fraction in disc galaxies; the median value is m_d = 0.084 (Upsilon_I3.56 h). Assuming that the gas fraction in galactic haloes is at most as large as that in clusters, we also conclude that < Upsilon_I> <~ 2.56 h^-1/2.

Analysis of the IRAS Low Resolution Spectra

DTIC Science & Technology

1988-04-01

WITH EU ANDROMEDAE : A CARBON 33 STAR NEAR AN OXYGEN-RICH CIRCUMSTELLAR SHELL (AP J COPYRIGHT - BENSON WORKED AT WELLESLEY COLL., WHILE LITTLE-MARENIN...OR AFGL MONEY) G. MASERS ASSOCIATED WITH TWO CARBON STARS: V778 CYGNI 71 AND EU ANDROMEDAE (ACCEPTED BY AP J FOR PUBLICATION 15 JUL 88; TWO NON...I.R. 1987, "A Water Maser Associated with EU Andromedae . A Carbon Star Near an Oxygen-Rich Circumstcllar Shell," Ap. J. (Letterc), 316, L37-L40. l

A General Field Theory for Vortex Structure and Interaction,

DTIC Science & Technology

1983-10-03

up,* * from the far reaches of space we examine the behavior of the spiral galaxy in the Andromeda Nebula, M31. *in a spiral sort of way, naturally...lines were determined with accuracy of 10 km/sec in the spiral galaxy in Andromeda , M31. The gas in the galaxy is assumed to move with the speed of...the spiral galaxy in the Andromeda Nebula there is no "bottom" boundary layer. Needless to say this data collection has been taken from a variety of

An Ecological Land Survey for Fort Greely, Alaska

DTIC Science & Technology

2001-02-01

microcarpus, and Andromeda polifolia. Uncommon and not mapped. Lowland Fen Low-lying swales on retransported deposits, lowland loess, and abandoned...saxatilis 3 Eriophorum scheuchzeri 3 Carex canescens 2 Poa lanata 0 0 1 Andromeda polifolia 0 1 1 Dactylina spp. 0 0 0 1 Oxycoccus microcarpus 0 0 1...0 0 2 6 0 0 Sphagnum spp. 1 15 10 23 79 10 4 Andromeda polifolia 0 1 2 0 Drosera rotundifolia 0 0 1 0 0 Aulacomnium turgidum 1 2 0 1 2 0 Chamaedaphne

Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA glycosylase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schormann, Norbert; Banerjee, Surajit; Ricciardi, Robert

Background: Uracil-DNA glycosylases are evolutionarily conserved DNA repair enzymes. However, vaccinia virus uracil-DNA glycosylase (known as D4), also serves as an intrinsic and essential component of the processive DNA polymerase complex during DNA replication. In this complex D4 binds to a unique poxvirus specific protein A20 which tethers it to the DNA polymerase. At the replication fork the DNA scanning and repair function of D4 is coupled with DNA replication. So far, DNA-binding to D4 has not been structurally characterized. Results: This manuscript describes the first structure of a DNA-complex of a uracil-DNA glycosylase from the poxvirus family. This alsomore » represents the first structure of a uracil DNA glycosylase in complex with an undamaged DNA. In the asymmetric unit two D4 subunits bind simultaneously to complementary strands of the DNA double helix. Each D4 subunit interacts mainly with the central region of one strand. DNA binds to the opposite side of the A20-binding surface on D4. In comparison of the present structure with the structure of uracil-containing DNA-bound human uracil-DNA glycosylase suggests that for DNA binding and uracil removal D4 employs a unique set of residues and motifs that are highly conserved within the poxvirus family but different in other organisms. Conclusion: The first structure of D4 bound to a truly non-specific undamaged double-stranded DNA suggests that initial binding of DNA may involve multiple non-specific interactions between the protein and the phosphate backbone.« less

Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA glycosylase

DOE PAGES

Schormann, Norbert; Banerjee, Surajit; Ricciardi, Robert; ...

2015-06-02

Background: Uracil-DNA glycosylases are evolutionarily conserved DNA repair enzymes. However, vaccinia virus uracil-DNA glycosylase (known as D4), also serves as an intrinsic and essential component of the processive DNA polymerase complex during DNA replication. In this complex D4 binds to a unique poxvirus specific protein A20 which tethers it to the DNA polymerase. At the replication fork the DNA scanning and repair function of D4 is coupled with DNA replication. So far, DNA-binding to D4 has not been structurally characterized. Results: This manuscript describes the first structure of a DNA-complex of a uracil-DNA glycosylase from the poxvirus family. This alsomore » represents the first structure of a uracil DNA glycosylase in complex with an undamaged DNA. In the asymmetric unit two D4 subunits bind simultaneously to complementary strands of the DNA double helix. Each D4 subunit interacts mainly with the central region of one strand. DNA binds to the opposite side of the A20-binding surface on D4. In comparison of the present structure with the structure of uracil-containing DNA-bound human uracil-DNA glycosylase suggests that for DNA binding and uracil removal D4 employs a unique set of residues and motifs that are highly conserved within the poxvirus family but different in other organisms. Conclusion: The first structure of D4 bound to a truly non-specific undamaged double-stranded DNA suggests that initial binding of DNA may involve multiple non-specific interactions between the protein and the phosphate backbone.« less

Differential role of base excision repair proteins in mediating cisplatin cytotoxicity.

PubMed

Sawant, Akshada; Floyd, Ashley M; Dangeti, Mohan; Lei, Wen; Sobol, Robert W; Patrick, Steve M

2017-03-01

Interstrand crosslinks (ICLs) are covalent lesions formed by cisplatin. The mechanism for the processing and removal of ICLs by DNA repair proteins involves nucleotide excision repair (NER), homologous recombination (HR) and fanconi anemia (FA) pathways. In this report, we monitored the processing of a flanking uracil adjacent to a cisplatin ICL by the proteins involved in the base excision repair (BER) pathway. Using a combination of extracts, purified proteins, inhibitors, functional assays and cell culture studies, we determined the specific BER proteins required for processing a DNA substrate with a uracil adjacent to a cisplatin ICL. Uracil DNA glycosylase (UNG) is the primary glycosylase responsible for the removal of uracils adjacent to cisplatin ICLs, whereas other uracil glycosylases can process uracils in the context of undamaged DNA. Repair of the uracil adjacent to cisplatin ICLs proceeds through the classical BER pathway, highlighting the importance of specific proteins in this redundant pathway. Removal of uracil is followed by the generation of an abasic site and subsequent cleavage by AP endonuclease 1 (APE1). Inhibition of either the repair or redox domain of APE1 gives rise to cisplatin resistance. Inhibition of the lyase domain of Polymerase β (Polβ) does not influence cisplatin cytotoxicity. In addition, lack of XRCC1 leads to increased DNA damage and results in increased cisplatin cytotoxicity. Our results indicate that BER activation at cisplatin ICLs influences crosslink repair and modulates cisplatin cytotoxicity via specific UNG, APE1 and Polβ polymerase functions. Copyright © 2017 Elsevier B.V. All rights reserved.

Efficacy of tegafur-uracil in advanced urothelial cancer patients after the treatment failure of platinum-based chemotherapy.

PubMed

Maolake, Aerken; Izumi, Kouji; Takahashi, Rie; Itai, Shingo; Machioka, Kazuaki; Yaegashi, Hiroshi; Nohara, Takahiro; Kitagawa, Yasuhide; Kadono, Yoshifumi; Konaka, Hiroyuki; Mizokami, Atsushi; Namiki, Mikio

2015-03-01

Platinum-based chemotherapy is the first-line treatment for advanced urinary tract urothelial cancers. However, the optimal second-line treatment is unclear. Although tegafur-uracil is sometimes used for advanced urothelial cancer patients after the treatment failure of platinum-based chemotherapy, there is little evidence regarding its use as a second-line treatment. Advanced urothelial cancer patients previously treated with platinum-based chemotherapy were retrospectively analyzed. Overall survival (OS) was compared between patients with and without tegafur-uracil treatment. Thirty-one patients (27 and 4 patients with and without tegafur-uracil treatment, respectively) were analyzed. OS from the last day of the final chemotherapy course was better in patients with tegafur-uracil treatment than in those without (p<0.001, 358 and 66.5 days of the median survival time, respectively). Tegafur-uracil may be a candidate for the secondary treatment of advanced urothelial cancer patients after the treatment failure of platinum-based chemotherapy. Copyright© 2015 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

The Relationship between the Perception and Production of Coarticulation during a Sound Change in Progress

ERIC Educational Resources Information Center

Kleber, Felicitas; Harrington, Jonathan; Reubold, Ulrich

2012-01-01

The present study is concerned with lax /[upsilon]/-fronting in Standard British English and in particular with whether this sound change in progress can be attributed to a waning of the perceptual compensation for the coarticulatory effects of context. Younger and older speakers produced various monosyllables in which /[upsilon]/ occurred in…

The dynamics of Andromeda's dwarf galaxies and stellar streams

NASA Astrophysics Data System (ADS)

Collins, Michelle L. M.; Rich, R. Michael; Ibata, Rodrigo; Martin, Nicolas; Preston, Janet; PAndAS Collaboration

2017-03-01

As part of the Z-PAndAS Keck II DEIMOS survey of resolved stars in our neighboring galaxy, Andromeda (M31), we have built up a unique data set of measured velocities and chemistries for thousands of stars in the Andromeda stellar halo, particularly probing its rich and complex substructure. In this contribution, we will discuss the structural, dynamical and chemical properties of Andromeda's dwarf spheroidal galaxies, and how there is no observational evidence for a difference in the evolutionary histories of those found on and off M31's vast plane of satellites. We will also discuss a possible extension to the most significant merger event in M31 - the Giant Southern Stream - and how we can use this feature to refine our understanding of M31's mass profile, and its complex evolution.

Comparative absorption spectroscopy involving 4f-4f transitions to explore the kinetics of simultaneous coordination of uracil with Nd(III) and Zn(II) and its associated thermodynamics

NASA Astrophysics Data System (ADS)

Victory Devi, Ch.; Rajmuhon Singh, N.

2011-10-01

The interaction of uracil with Nd(III) has been explored in presence and absence of Zn(II) using the comparative absorption spectroscopy involving the 4f-4f transitions in different solvents. The complexation of uracil with Nd(III) is indicated by the change in intensity of 4f-4f bands expressing in terms of significant change in oscillator strength and Judd-Ofelt parameters. Intensification of this bands became more prominent in presence of Zn(II) suggesting the stimulative effect of Zn(II) towards the complexation of Nd(III) with uracil. Other spectral parameters namely Slator-Condon ( Fk's), nephelauxetic effect ( β), bonding ( b1/2) and percent covalency ( δ) parameters are computed to correlate their simultaneous binding of metal ions with uracil. The sensitivities of the observed 4f-4f transitions towards the minor coordination changes around Nd(III) has been used to monitor the simultaneous coordination of uracil with Nd(III) and Zn(II). The variation of intensities (oscillator strengths and Judd-Ofelt parameters) of 4f-4f bands during the complexation has helped in following the heterobimetallic complexation of uracil. Rate of complexation with respect to hypersensitive transition was evaluated. Energy of activation and thermodynamic parameters for the complexation reaction were also determined.

The Photochemistry of Pyrimidine in Pure H2O Ice Subjected to Different Radiation Environments and the Formation of Uracil

NASA Technical Reports Server (NTRS)

Nuevo, M.; Chen, Y.-J.; Materese. C. K..; Hu, W.-J.; Qiu, J.-M.; Wu, S.-R.; Fung, H.-S.; Sandford, S. A.; Chu, C.-C.; Yih, T.-S.;

Single nucleotide polymorphisms in uracil-processing genes, intake of one-carbon nutrients and breast cancer risk

USDA-ARS?s Scientific Manuscript database

Background/Objectives: The misincorporation of uracil into DNA leads to genomic instability. In a previous study, some of us identified four common single nucleotide polymorphisms (SNPs) in uracil-processing genes (rs2029166 and rs7296239 in SMUG1, rs34259 in UNG and rs4775748 in DUT) that were asso...

Generation of a Uracil Auxotroph Strain of the Probiotic Yeast Saccharomyces boulardii as a Host for the Recombinant Protein Production

PubMed Central

Hamedi, Hassan; Misaghi, Ali; Modarressi, Mohammad Hossein; Salehi, Taghi Zahraei; Khorasanizadeh, Dorsa; Khalaj, Vahid

2013-01-01

Background Saccharomyces boulardii (S. boulardii) is the best known probiotic yeast. The genetic engineering of this probiotic strain requires the availability of appropriate mutants to accept various gene constructs carrying different selection markers. As the auxotrophy selection markers are under focus, we have generated a ura3 auxotroph mutant of S. boulardii for use in further genetic manipulations. Methods Classical UV mutagenesis was used for the generation of auxotroph mutants. The mutants were selected in the presence of 5-FOA (5-Fluoroorotic acid), uracil and uridine. Uracil auxotrophy phenotype was confirmed by the ability of mutants to grow in the presence of uracil and the lack of growth in the absence of this compound. To test whether the uracil auxotrophy phenotype is due to the inactivation of URA3, the mutants were transformed with a plasmid carrying the gene. An in vitro assay was used for the analysis of acid and bile resistance capacity of these mutants. Results Three mutants were found to be ura3 auxotroph as they were able to grow only in the presence of uracil. When the URA3 gene was added, these mutants were able to grow normally in the absence of uracil. Further in vitro analysis showed that the acid and bile resistance capacity of one of these mutants is intact and similar to the wild type. Conclusion A uracil auxotroph mutant of the probiotic yeast, S. boulardii, was generated and characterized. This auxotroph strain may have potential applications in the production and delivery of the recombinant pharmacuetics into the intestinal lumen. PMID:23626874

Andromeda

NASA Image and Video Library

2012-05-16

Hot stars burn brightly in this new image from NASA Galaxy Evolution Explorer, showing the ultraviolet side of a familiar face. Approximately 2.5 million light-years away, the Andromeda galaxy, or M31, is our Milky Way largest galactic neighbor.

Mitochondrial inhibition of uracil-DNA glycosylase is not mutagenic

PubMed Central

Kachhap, Sushant; Singh, Keshav K

2004-01-01

Background Uracil DNA glycosylase (UDG) plays a major role in repair of uracil formed due to deamination of cytosine. UDG in human cells is present in both the nucleus and mitochondrial compartments. Although, UDG's role in the nucleus is well established its role in mitochondria is less clear. Results In order to identify UDG's role in the mitochondria we expressed UGI (uracil glycosylase inhibitor) a natural inhibitor of UDG in the mitochondria. Our studies suggest that inhibition of UDG by UGI in the mitochondria does not lead to either spontaneous or induced mutations in mtDNA. Our studies also suggest that UGI expression has no affect on cellular growth or cytochrome c-oxidase activity. Conclusions These results suggest that human cell mitochondria contain alternatives glycosylase (s) that may function as back up DNA repair protein (s) that repair uracil in the mitochondria. PMID:15574194

Detection of the YORP effect in asteroid (1620) Geographos

NASA Astrophysics Data System (ADS)

Durech, J.; Vokrouhlický, D.; Kaasalainen, M.; Higgins, D.; Krugly, Yu. N.; Gaftonyuk, N. M.; Shevchenko, V. G.; Chiorny, V. G.; Hamanowa, H.; Hamanowa, H.; Reddy, V.; Dyvig, R. R.

2008-10-01

Aims: The rotation state of small asteroids is affected by the Yarkovsky-O'Keefe-Radzievskii-Paddack (YORP) torque. The directly observable consequence of the YORP effect is the secular change of the asteroid's rotation period. We carried out new photometric observations of asteroid (1620) Geographos in 2008 to extend the time line that, if long enough, would enable us to see possible deviations from a constant period rotation. Methods: We used the lightcurve inversion method to model the shape and spin state of Geographos. We assumed that the rotation rate evolves in time as ω(t) = ω0 + \\upsilon t, where both the constant term of the rotation rate ω0 and the linear term \\upsilon are parameters to be optimized. In total, we used 94 lightcurves observed in 1969-2008. Results: We show that for \\upsilon = 0, a constant-period model, the whole dataset of lightcurves cannot be satisfactorily fitted. However, when relaxing \\upsilon in the optimization process we obtain an excellent agreement between the model and observations. The best-fit value \\upsilon = (1.15 ± 0.15) × 10-8 rad d-2 implies that Geographos' rotation rate accelerates by ≃2.7 ms yr-1. This is in agreement with the theoretically predicted value 1.4 × 10-8 rad d-2 obtained from numerical integration of YORP torques acting on our convex shape model. Geographos is only the third asteroid (after (1862) Apollo and (54509) YORP) for which the YORP effect has been detected. It is also the largest object for which effects of thermal torques were revealed.

Uncovering the Detailed Structure and Dynamics of Andromeda's Complex Stellar Disk

NASA Astrophysics Data System (ADS)

Dorman, Claire; Guhathakurta, Puragra; Seth, Anil; Dalcanton, Julianne; Widrow, Larry; Splash Team, Phat Team

2015-01-01

Lambda cold dark matter (LCDM) cosmology predicts that the disks of Milky Way-mass galaxies should have undergone at least one merger with a large (mass ratio 1:10) satellite in the last several Gyr. However, the stellar disk in the solar neighborhood of the Milky Way is too thin and dynamically cold to have experienced such an impact. The dynamics of the nearby Andromeda galaxy can serve as a second data point, and help us understand whether the Milky Way may simply have had an unusually quiescent merger history, or whether LCDM theory needs to be revisited. Over the last few years, we have carried out a detailed study of the resolved stellar populations in the disk of the Andromeda galaxy using data from two surveys: six-filter Hubble Space Telescope photometry from the recently-completed Panchromatic Hubble Andromeda Treasury (PHAT) survey, and radial velocities derived from Keck/DEIMOS optical spectra obtained as part of the Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo (SPLASH) program. These detailed, multidimensional data sets allow us to decouple the structural subcomponents and characterize them individually. We find that an old, dynamically hot (velocity dispersion ~150 km/s) RGB population extends out to 20 kpc (the edge of the visible disk) but has a disk-like surface brightness profile and luminosity function. This population may have originated in the disk but been kicked out subsequently in impacts with satellite galaxies. We also study the kinematics of the disk as a function of the age of stellar tracers, and find a direct correlation between age and velocity dispersion, indicating that Andromeda has undergone a continuous heating or disk settling process throughout its lifetime. Overall, both the velocity dispersion of Andromeda's disk and the slope of the velocity dispersion vs. stellar age curve are several times those of the Milky Way's, suggesting a more active merger history more in line with LCDM cosmological predictions.This research was funded by grants from the NSF and NASA/STScI.

Structure and dynamics of Andromeda's stellar disk

NASA Astrophysics Data System (ADS)

Dorman, Claire Elise

2015-10-01

Lambda cold dark matter (LambdaCDM) cosmology predicts that the disks of Milky Way-mass galaxies should have undergone at least one merger with a large (mass ratio 1:10) satellite in the last several Gyr. However, the stellar disk in the solar neighborhood of the Milky Way is too thin and dynamically cold to have experienced such an impact. The dynamics of the nearby Andromeda galaxy can serve as a second data point, and help us understand whether the Milky Way may simply have had an unusually quiescent merger history, or whether LambdaCDM theory needs to be revisited. Over the last few years, we have carried out a detailed study of the resolved stellar populations in the disk of the Andromeda galaxy using data from two surveys: six-filter Hubble Space Telescope photometry from the recently-completed Panchromatic Hubble Andromeda Treasury (PHAT) survey, and radial velocities derived from Keck/DEIMOS optical spectra obtained as part of the Spectroscopic and Photometric Landscape of Andromeda's Stellar 0Halo (SPLASH) program. These detailed, multidimensional data sets allow us to decouple the structural subcomponents and characterize them individually. We find that an old, dynamically hot (velocity dispersion 150 km/s) RGB population extends out to 20 kpc (the edge of the visible disk) but has a disk-like surface brightness profile and luminosity function. This population may have originated in the disk but been kicked out subsequently in impacts with satellite galaxies. We also study the kinematics of the disk as a function of the age of stellar tracers, and find a direct correlation between age and velocity dispersion, indicating that Andromeda has undergone a continuous heating or disk settling process throughout its lifetime. Overall, both the velocity dispersion of Andromeda's disk and the slope of the velocity dispersion vs. stellar age curve are several times those of the Milky Way's, suggesting a more active merger history more in line with LambdaCDM cosmological predictions.

Electron-impact excitation of gas-phase uracil

NASA Astrophysics Data System (ADS)

Chernyshova, I. V.; Kontros, J. E.; Markush, P. P.; Borovik, A. A.; Shpenik, O. B.

2012-11-01

The low lying excited states of uracil have been studied using electron energy-loss spectroscopy. In addition to the dipole allowed transitions to the singlet states, the two lowest triplet states are also observed. In the uracil molecule, the singlet electronic states have been found, being blue-shifted by about 0.5 eV as compared to the UV-absorption results.

Galactic Building Blocks Seen Swarming Around Andromeda

NASA Astrophysics Data System (ADS)

2004-02-01

Green Bank, WV - A team of astronomers using the National Science Foundation's Robert C. Byrd Green Bank Telescope (GBT) has made the first conclusive detection of what appear to be the leftover building blocks of galaxy formation -- neutral hydrogen clouds -- swarming around the Andromeda Galaxy, the nearest large spiral galaxy to the Milky Way. This discovery may help scientists understand the structure and evolution of the Milky Way and all spiral galaxies. It also may help explain why certain young stars in mature galaxies are surprisingly bereft of the heavy elements that their contemporaries contain. Andromeda Galaxy This image depicts several long-sought galactic "building blocks" in orbit of the Andromeda Galaxy (M31). The newfound hydrogen clouds are depicted in a shade of orange (GBT), while gas that comprises the massive hydrogen disk of Andromeda is shown at high-resolution in blue (Westerbork Sythesis Radio Telescope). CREDIT: NRAO/AUI/NSF, WSRT (Click on Image for Larger Version) "Giant galaxies, like Andromeda and our own Milky Way, are thought to form through repeated mergers with smaller galaxies and through the accretion of vast numbers of even lower mass 'clouds' -- dark objects that lack stars and even are too small to call galaxies," said David A. Thilker of the Johns Hopkins University in Baltimore, Maryland. "Theoretical studies predict that this process of galactic growth continues today, but astronomers have been unable to detect the expected low mass 'building blocks' falling into nearby galaxies, until now." Thilker's research is published in the Astrophysical Journal Letters. Other contributors include: Robert Braun of the Netherlands Foundation for Research in Astronomy; Rene A.M. Walterbos of New Mexico State University; Edvige Corbelli of the Osservatorio Astrofisico di Arcetri in Italy; Felix J. Lockman and Ronald Maddalena of the National Radio Astronomy Observatory (NRAO) in Green Bank, West Virginia; and Edward Murphy of the University of Virginia. The Milky Way and Andromeda were formed many billions of years ago in a cosmic neighborhood brimming with galactic raw materials -- among which hydrogen, helium, and cold dark matter were primary constituents. By now, most of this raw material has probably been gobbled up by the two galaxies, but astronomers suspect that some primitive clouds are still floating free. Previous studies have revealed a number of clouds of neutral atomic hydrogen that are near the Milky Way but not part of its disk. These were initially referred to as high-velocity clouds (HVCs) when they were first discovered because they appeared to move at velocities difficult to reconcile with Galactic rotation. Scientists were uncertain if HVCs comprised building blocks of the Milky Way that had so far escaped capture, or if they traced gas accelerated to unexpected velocities by energetic processes (multiple supernovae) within the Milky Way. The discovery of similar clouds bound to the Andromeda Galaxy strengthens the case that at least some of these HVCs are indeed galactic building blocks. Astronomers are able to use radio telescopes to detect the characteristic 21-centimeter radiation emitted naturally by neutral atomic hydrogen. The great difficulty in analyzing these low-mass galactic building blocks has been that their natural radio emission is extremely faint. Even those nearest to us, clouds orbiting our Galaxy, are hard to study because of serious distance uncertainties. "We know the Milky Way HVCs are relatively nearby, but precisely how close is maddeningly tough to determine," said Thilker. Past attempts to find missing satellites around external galaxies at well-known distances have been unsuccessful because of the need for a very sensitive instrument capable of producing high-fidelity images, even in the vicinity of a bright source such as the Andromeda Galaxy. One might consider this task similar to visually distinguishing a candle placed adjacent to a spotlight. The novel design of the recently commissioned GBT met these challenges brilliantly, and gave astronomers their first look at the cluttered neighborhood around Andromeda. The Andromeda Galaxy was targeted because it is the nearest massive spiral galaxy. "In some sense, the rich get richer, even in space," said Thilker. "All else being equal, one would expect to find more primordial clouds in the vicinity of a large spiral galaxy than near a small dwarf galaxy, for instance. This makes Andromeda a good place to look, especially considering its relative proximity -- a mere 2.5 million light-years from Earth." What the GBT was able to pin down was a population of 20 discrete neutral hydrogen clouds, together with an extended filamentary component, which, the astronomers believe, are both associated with Andromeda. These objects, seemingly under the gravitational influence of Andromeda's halo, are thought to be the gaseous clouds of the "missing" (perhaps dark-matter dominated) satellites and their merger remnants. They were found within 163,000 light-years of Andromeda. Favored cosmological models have predicted the existence of these satellites, and their discovery could account for some of the missing "cold dark matter" in the Universe. Also, confirmation that these low-mass objects are ubiquitous around larger galaxies could help solve the mystery of why certain young stars, known as G-dwarf stars, are chemically similar to ones that evolved billions of years ago. As galaxies age, they develop greater concentrations of heavy elements formed by the nuclear reactions in the cores of stars and in the cataclysmic explosions of supernovae. These explosions spew heavy elements out into the galaxy, which then become planets and get taken up in the next generation of stars. Spectral and photometric analysis of young stars in the Milky Way and other galaxies, however, show that there are a certain number of young stars that are surprisingly bereft of heavy elements, making them resemble stars that should have formed in the early stages of galactic evolution. "One way to account for this strange anomaly is to have a fresh source of raw galactic material from which to form new stars," said Murphy. "Since high-velocity clouds may be the leftover building blocks of galaxy formation, they contain nearly pristine concentrations of hydrogen, mostly free from the heavy metals that seed older galaxies." Their merger into large galaxies, therefore, could explain how fresh material is available for the formation of G-dwarf stars. The Andromeda Galaxy, also known as M31, is one of only a few galaxies that are visible from Earth with the unaided eye, and is seen as a faint smudge in the constellation Andromeda. When viewed through a modest telescope, Andromeda also reveals that it has two prominent satellite dwarf galaxies, known as M32 and M110. These dwarfs, along with the clouds studied by Thilker and collaborators, are doomed to eventually merge with Andromeda. The Milky Way, M33, and the Andromeda Galaxy plus about 40 dwarf companions, comprise what is known as the "Local Group." Today, Andromeda is perhaps the most studied galaxy other than the Milky Way. In fact, many of the things we know about the nature of galaxies like the Milky Way were learned by studying Andromeda, since the overall features of our own galaxy are disguised by our internal vantage point. "In this case, Andromeda is a good analogue for the Milky Way," said Murphy. "It clarifies the picture. Living inside the Milky Way is like trying to determine what your house looks like from the inside, without stepping outdoors. However, if you look at neighbors' houses, you can get a feeling for what your own home might look like." The GBT is the world's largest fully steerable radio telescope. The National Radio Astronomy Observatory is a facility of the National Science Foundation, operated under cooperative agreement by Associated Universities, Inc.

Correlated Mutation in the Evolution of Catalysis in Uracil DNA Glycosylase Superfamily

NASA Astrophysics Data System (ADS)

Xia, Bo; Liu, Yinling; Guevara, Jose; Li, Jing; Jilich, Celeste; Yang, Ye; Wang, Liangjiang; Dominy, Brian N.; Cao, Weiguo

2017-04-01

Enzymes in Uracil DNA glycosylase (UDG) superfamily are essential for the removal of uracil. Family 4 UDGa is a robust uracil DNA glycosylase that only acts on double-stranded and single-stranded uracil-containing DNA. Based on mutational, kinetic and modeling analyses, a catalytic mechanism involving leaving group stabilization by H155 in motif 2 and water coordination by N89 in motif 3 is proposed. Mutual Information analysis identifies a complexed correlated mutation network including a strong correlation in the EG doublet in motif 1 of family 4 UDGa and in the QD doublet in motif 1 of family 1 UNG. Conversion of EG doublet in family 4 Thermus thermophilus UDGa to QD doublet increases the catalytic efficiency by over one hundred-fold and seventeen-fold over the E41Q and G42D single mutation, respectively, rectifying the strong correlation in the doublet. Molecular dynamics simulations suggest that the correlated mutations in the doublet in motif 1 position the catalytic H155 in motif 2 to stabilize the leaving uracilate anion. The integrated approach has important implications in studying enzyme evolution and protein structure and function.

Andromeda is So Hot n Cold

NASA Image and Video Library

2011-01-05

This mosaic of the Andromeda spiral galaxy highlights explosive stars in its interior, and cooler, dusty stars forming in its many rings. This is a combination of observations from the Herschel Space Observatory and the XMM-Newton telescope.

Warped Andromeda

NASA Image and Video Library

2010-02-17

This image from NASA Wide-field Infrared Survey Explorer highlights the Andromeda galaxy older stellar population in blue. A pronounced warp in the disk of the galaxy, the aftermath of a collision with another galaxy, can be seen in the spiral arm.

The global dark halo structure of the Andromeda galaxy

NASA Astrophysics Data System (ADS)

Hayashi, Kohei; Chiba, Masashi

2014-01-01

We set new limits on the global shape of the dark halo in the Andromeda galaxy based on axisymmetric mass models constructed by Hayashi & Chiba (2012). This is motivated by the fact that CDM models predict non-spherical virialized dark halos, which reflect the process of mass assembly in the galactic scale. Based on the application of our models to latest kinematical data of globular clusters and dwarf spheroidal galaxies in the Andromeda halo, we find that the most plausible cases for Andromeda yield not a spherical but a prolate shape for its dark halo. We also find that the prolate dark halo is consistent with theoretical predictions in which the satellites are distributed anisotropically and preferentially located along major axes of their galactic host halos. It is a reflection of the intimate connection between galactic dark matter halos and the cosmic web.

Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases: Poxvirus Uracil-DNA Glycosylase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schormann, Norbert; Zhukovskaya, Natalia; Bedwell, Gregory

We report that uracil-DNA glycosylases are ubiquitous enzymes, which play a key role repairing damages in DNA and in maintaining genomic integrity by catalyzing the first step in the base excision repair pathway. Within the superfamily of uracil-DNA glycosylases family I enzymes or UNGs are specific for recognizing and removing uracil from DNA. These enzymes feature conserved structural folds, active site residues and use common motifs for DNA binding, uracil recognition and catalysis. Within this family the enzymes of poxviruses are unique and most remarkable in terms of amino acid sequences, characteristic motifs and more importantly for their novel non-enzymaticmore » function in DNA replication. UNG of vaccinia virus, also known as D4, is the most extensively characterized UNG of the poxvirus family. D4 forms an unusual heterodimeric processivity factor by attaching to a poxvirus-specific protein A20, which also binds to the DNA polymerase E9 and recruits other proteins necessary for replication. D4 is thus integrated in the DNA polymerase complex, and its DNA-binding and DNA scanning abilities couple DNA processivity and DNA base excision repair at the replication fork. In conclusion, the adaptations necessary for taking on the new function are reflected in the amino acid sequence and the three-dimensional structure of D4. We provide an overview of the current state of the knowledge on the structure-function relationship of D4.« less

Pms2 and uracil-DNA glycosylases act jointly in the mismatch repair pathway to generate Ig gene mutations at A-T base pairs.

PubMed

Girelli Zubani, Giulia; Zivojnovic, Marija; De Smet, Annie; Albagli-Curiel, Olivier; Huetz, François; Weill, Jean-Claude; Reynaud, Claude-Agnès; Storck, Sébastien

2017-04-03

During somatic hypermutation (SHM) of immunoglobulin genes, uracils introduced by activation-induced cytidine deaminase are processed by uracil-DNA glycosylase (UNG) and mismatch repair (MMR) pathways to generate mutations at G-C and A-T base pairs, respectively. Paradoxically, the MMR-nicking complex Pms2/Mlh1 is apparently dispensable for A-T mutagenesis. Thus, how detection of U:G mismatches is translated into the single-strand nick required for error-prone synthesis is an open question. One model proposed that UNG could cooperate with MMR by excising a second uracil in the vicinity of the U:G mismatch, but it failed to explain the low impact of UNG inactivation on A-T mutagenesis. In this study, we show that uracils generated in the G1 phase in B cells can generate equal proportions of A-T and G-C mutations, which suggests that UNG and MMR can operate within the same time frame during SHM. Furthermore, we show that Ung -/- Pms2 -/- mice display a 50% reduction in mutations at A-T base pairs and that most remaining mutations at A-T bases depend on two additional uracil glycosylases, thymine-DNA glycosylase and SMUG1. These results demonstrate that Pms2/Mlh1 and multiple uracil glycosylases act jointly, each one with a distinct strand bias, to enlarge the immunoglobulin gene mutation spectrum from G-C to A-T bases. © 2017 Girelli Zubani et al.

Pms2 and uracil-DNA glycosylases act jointly in the mismatch repair pathway to generate Ig gene mutations at A-T base pairs

PubMed Central

De Smet, Annie; Albagli-Curiel, Olivier; Huetz, François; Weill, Jean-Claude

2017-01-01

During somatic hypermutation (SHM) of immunoglobulin genes, uracils introduced by activation-induced cytidine deaminase are processed by uracil-DNA glycosylase (UNG) and mismatch repair (MMR) pathways to generate mutations at G-C and A-T base pairs, respectively. Paradoxically, the MMR-nicking complex Pms2/Mlh1 is apparently dispensable for A-T mutagenesis. Thus, how detection of U:G mismatches is translated into the single-strand nick required for error-prone synthesis is an open question. One model proposed that UNG could cooperate with MMR by excising a second uracil in the vicinity of the U:G mismatch, but it failed to explain the low impact of UNG inactivation on A-T mutagenesis. In this study, we show that uracils generated in the G1 phase in B cells can generate equal proportions of A-T and G-C mutations, which suggests that UNG and MMR can operate within the same time frame during SHM. Furthermore, we show that Ung−/−Pms2−/− mice display a 50% reduction in mutations at A-T base pairs and that most remaining mutations at A-T bases depend on two additional uracil glycosylases, thymine-DNA glycosylase and SMUG1. These results demonstrate that Pms2/Mlh1 and multiple uracil glycosylases act jointly, each one with a distinct strand bias, to enlarge the immunoglobulin gene mutation spectrum from G-C to A-T bases. PMID:28283534

The Dirt on Andromeda

NASA Image and Video Library

2010-02-17

This image from NASA Wide-field Infrared Survey Explorer highlights the dust that speckles the Andromeda galaxy spiral arms. The hot dust, which is being heated by newborn stars, traces the spidery arms all the way to the center of the galaxy.

Associated {Upsilon}+{gamma} production at the LHC in the k{sub t}-factorization approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baranov, S. P.

In the framework of the k{sub t}-factorization approach, the photon-associated production of {Upsilon} mesons at the present-day LHC conditions is studied. The differential cross sections and polarization parameters are calculated in the ''helicity'' and Collins-Soper systems. Special attention is paid to the effect of experimental cuts that can dramatically change the visible lepton angular distributions.

ScienceCast 64: Andromeda vs. the Milky Way: Astronomers Predict a Titanic Collision

NASA Image and Video Library

2012-06-08

Astronomers no longer have any doubt: Our Milky Way Galaxy will have a head-on collision with Andromeda. Fortunately, they say, Earth will survive when the two great star systems meet 4 billions years from now.

Constituents of Andromeda polifolia.

PubMed

Pachaly, P; Klein, M

1987-10-01

A reinvestigation of the aerial parts of ANDROMEDA POLIFOLIA afforded in addition to the known compounds gardenoside ( 1), guaijaverine ( 2) and avicularine ( 3), a new flavonol-dipentoside named polifolioside ( 4). the compounds were isolated employing DCCC and their structures were elucidated by spectroscopic methods.

Production of uracil from methane by a newly isolated Methylomonas sp. SW1.

PubMed

Kim, Sangwoo; Lee, Wangjun; Song, Insu; Kwon, Yuhyun; Yun, Seokhun; Park, Soohyun; Cho, Sukhyeong; Oh, Byung-Keun; Oh, Han Bin; Lee, Jinwon

2016-12-20

Methane is an abundant, inexpensive one-carbon feedstock and one of the most powerful greenhouse gases. Because it does not compete with food demand, it is considered a promising carbon feedstock for the production of valuable products using methanotrophic bacteria. Here, we isolated a novel methanotrophic bacterium, Methylomonas sp. SW1, from a sewage sample obtained from Wonju City Water Supply Drainage Center, Republic of Korea. The conditions for uracil production by Methylomonas sp. SW1, such as Cu 2+ concentration and temperature were investigated and optimized. As a result, Methylomonas sp. SW1 produced uracil from methane as a sole carbon source with a titer of 2.1mg/L in 84h without genetic engineering under the optimized condition. The results in this study demonstrate the feasibility of using Methylomonas sp. SW1 for the production of uracil from methane. This is the first report of uracil production from gas feedstock by methanotrophic bacteria. Copyright © 2016 Elsevier B.V. All rights reserved.

6-[(Dimethyl­amino)methyl­ene­amino]-1,3-dimethyl­pyrimidine-2,4(1H,3H)-dione dihydrate

PubMed Central

Das, Subrata; Saikia, Binoy K.; Sridhar, B.; Thakur, Ashim J.

2008-01-01

Uracil, the pyrimidine nucleobase, which combined with adenine forms one of the major motifs present in the biopolymer RNA, is also involved in the self-assembly of RNA. In the title compound, C9H14N4O2·2H2O, the asymmetric unit contains one dimethyl­amino­uracil group and two water mol­ecules. The plane of the N=C—NMe2 side chain is inclined at 27.6 (5)° to the plane of the uracil ring. Both water mol­ecules form O—H⋯O hydrogen bonds with the carbonyl O atoms of the uracil group. Additional water–water hydrogen-bond inter­actions are also observed in the crystal structure. The O—H⋯O hydrogen bonds lead to the formation of a two-dimensional hydrogen-bonded network cage consisting of two dimethyl­amino­uracil groups and six water mol­ecules. PMID:21201655

RXTE Observations of Anomalous X-ray Pulsar 1E 1547.0-5408 During and After its 2008 and 2009 Outbursts

NASA Technical Reports Server (NTRS)

Dib, Rim; Kaspi, Victoria M.; Scholz, Paul; Gavriil, Fotis P.

2012-01-01

We present the results of Rossi X-ray Timing Explorer (RXTE) and Swift monitoring observations of the magnetar 1E 1547.0-5408 following the pulsar's radiative outbursts in 2008 October and 2009 January. We report on a study of the evolution of the timing properties and the pulsed flux from 2008 October 4 through 2009 December 26. In our timing study, a phase-coherent analysis shows that for the first 29 days following the 2008 outburst, there was a very fast increase in the magnitude of the rotational frequency derivative upsilon-dot, such that upsilon-dot-dot was a factor of 60 larger than that reported in data from 2007. This upsilon-dot magnitude increase occurred in concert with the decay of the pulsed flux following the start of the 2008 event. Following the 2009 outburst, for the first 23 days, upsilon-dot-dot was consistent with zero, and upsilon-dot had returned to close to its 2007 value. In contrast to the 2008 event, the 2009 outburst showed a major increase in persistent flux, relatively little change in the pulsed flux, and sudden significant spectral hardening approx 15 days after the outburst. We show that, excluding the month following each of the outbursts, and because of the noise and the sparsity in the data, multiple plausible timing solutions fit the pulsar's frequency behavior. We note similarities in the behavior of 1E 1547.0-5408 following the 2008 outburst to that seen in the AXP 1E 1048.1-5937 following its 2001-2002 outburst and discuss this in terms of the magnetar model.

Exhaustion: The African Way of War

DTIC Science & Technology

2014-04-23

Agony of a Nation (Freetown, Sierra Leone: Andromeda Publications, 1996), 144. 150Dorman, Blair’s Successful War, 119. 151Keen, Conflict and...Cases. Westport, CT: Praeger, 2002. Koroma, Abdul K. Sierra Leone: The Agony of a Nation. Freetown. Sierra Leone: Andromeda Publications, 1996

JPRS Report, Science & Technology, USSR: Space

DTIC Science & Technology

1988-02-26

data on short-wave length radiation of galaxies. Areas in the constellations Puppis and Andromeda have been selected as objects of observations...the days just past, and photographing of individual sections of the constellation Triangulum and the Andromeda Nebula is planned for today. Both

Amazing Andromeda Galaxy

NASA Technical Reports Server (NTRS)

2006-01-01

The many 'personalities' of our great galactic neighbor, the Andromeda galaxy, are exposed in this new composite image from NASA's Galaxy Evolution Explorer and the Spitzer Space Telescope.

The wide, ultraviolet eyes of Galaxy Evolution Explorer reveal Andromeda's 'fiery' nature -- hotter regions brimming with young and old stars. In contrast, Spitzer's super-sensitive infrared eyes show Andromeda's relatively 'cool' side, which includes embryonic stars hidden in their dusty cocoons.

Galaxy Evolution Explorer detected young, hot, high-mass stars, which are represented in blue, while populations of relatively older stars are shown as green dots. The bright yellow spot at the galaxy's center depicts a particularly dense population of old stars.

Swaths of red in the galaxy's disk indicate areas where Spitzer found cool, dusty regions where stars are forming. These stars are still shrouded by the cosmic clouds of dust and gas that collapsed to form them.

Together, Galaxy Evolution Explorer and Spitzer complete the picture of Andromeda's swirling spiral arms. Hints of pinkish purple depict regions where the galaxy's populations of hot, high-mass stars and cooler, dust-enshrouded stars co-exist.

Located 2.5 million light-years away, the Andromeda is our largest nearby galactic neighbor. The galaxy's entire disk spans about 260,000 light-years, which means that a light beam would take 260,000 years to travel from one end of the galaxy to the other. By comparison, our Milky Way galaxy's disk is about 100,000 light-years across.

This image is a false color composite comprised of data from Galaxy Evolution Explorer's far-ultraviolet detector (blue), near-ultraviolet detector (green), and Spitzer's multiband imaging photometer at 24 microns (red).

Changes in the ultraviolet spectrum of EG Andromedae

NASA Technical Reports Server (NTRS)

Stencel, R. E.

1984-01-01

Ultraviolet observations of EG Andromedae, a symbiotic star, are reported which clearly show pronounced eclipse-like effects on the high-temperature far-UV continuum. Continuum and emission-line variations with phase are reported and related to synoptic hydrogen alpha data. System parameters are characterized.

Andromeda and the Milky Way: Twin sisters, distant relations, or strangers in the night?

NASA Astrophysics Data System (ADS)

McConnachie, A.; Richardson, J.; Mackey, D.

2012-02-01

I summarize some recent key results from the Pan-Andromeda Archaeological Survey (PAndAS), in particular showing how recent discoveries in and around M31 compare to the known structure of the Milky Way and its satellite population.

Cool Andromeda

NASA Image and Video Library

2013-01-28

In this new view of the Andromeda, also known as M31, galaxy from the Herschel space observatory, cool lanes of forming stars are revealed in the finest detail yet. M31 is the nearest major galaxy to our own Milky Way at a distance of 2.5 million light-ye

Iran’s Nuclear Program: An Assessment of the Threat to the United States

DTIC Science & Technology

2009-12-01

Mohammad Reza Pahlavi. Peter Haggett, Encyclopedia of World Geography, Volume 15 (Oxfordshire: Andromeda Oxford, 2002), 2,044. 16...Peter. Encyclopedia of World Geography, Volume 15. Oxfordshire: Andromeda Oxford, 2002. Hersh, Seymour. The Samson Option: Israel’s Nuclear Arsenal

United States Air Force High School Apprenticeship Program. 1990 Program Management Report. Volume 1

DTIC Science & Technology

1991-04-18

12.59498 50 0750 B AURIGA COLURE 2.1 88.96491 44.94464 51 3765 A ANDROMEDA SIRRAH*** 2.1 1.44934 28.81448 52 0878 C VELA 2.2 136.53879 - 43.22989 53...251.73003 - 14.2043273 4471 B ANDROMEDA MIRACH 2.4 16.73107 .j.3560474 5093 A PHOENIX ----- 2.4 5.95429 - 42,5773775 7876 B URSA MAJOR MERAK 2.4...158 0734 N ANDROMEDA 3.1 340.16360 29.95928 159 9696 C SAGITTARIUS 3.1 270.64865 - 30.42661 160 4538 Z CENTAURUS 3.1 208.10213 - 47.04302 161 3629 W

Lacerta I and Cassiopeia III. Two Luminous and Distant Andromeda Satellite Dwarf Galaxies Found in the 3π Pan-STARRS1 Survey

NASA Astrophysics Data System (ADS)

Martin, Nicolas F.; Slater, Colin T.; Schlafly, Edward F.; Morganson, Eric; Rix, Hans-Walter; Bell, Eric F.; Laevens, Benjamin P. M.; Bernard, Edouard J.; Ferguson, Annette M. N.; Finkbeiner, Douglas P.; Burgett, William S.; Chambers, Kenneth C.; Hodapp, Klaus W.; Kaiser, Nicholas; Kudritzki, Rolf-Peter; Magnier, Eugene A.; Morgan, Jeffrey S.; Price, Paul A.; Tonry, John L.; Wainscoat, Richard J.

2013-07-01

We report the discovery of two new dwarf galaxies, Lacerta I/Andromeda XXXI (Lac I/And XXXI) and Cassiopeia III/Andromeda XXXII (Cas III/And XXXII), in stacked Pan-STARRS1 r P1- and i P1-band imaging data. Both are luminous systems (MV ~ -12) located at projected distances of 20.°3 and 10.°5 from M31. Lac I and Cas III are likely satellites of the Andromeda galaxy with heliocentric distances of 756^{+44}_{-28}\\,kpc and 772^{+61}_{-56}\\,kpc, respectively, and corresponding M31-centric distances of 275 ± 7 kpc and 144^{+6}_{-4}\\,kpc. The brightest of recent Local Group member discoveries, these two new dwarf galaxies owe their late discovery to their large sizes (r_h = 4.2^{+0.4}_{-0.5} arcmin or 912^{+124}_{-93}\\,pc for Lac I r_h = 6.5^{+1.2}_{-1.0} arcmin or 1456 ± 267 pc for Cas III) and consequently low surface brightness (μ0 ~ 26.0 mag arcsec-2), as well as to the lack of a systematic survey of regions at large radii from M31, close to the Galactic plane. This latter limitation is now alleviated by the 3π Pan-STARRS1 survey, which could lead to the discovery of other distant Andromeda satellite dwarf galaxies.

Kepler-424 b: A "Lonely" Hot Jupiter that Found a Companion

NASA Astrophysics Data System (ADS)

Endl, Michael; Caldwell, Douglas A.; Barclay, Thomas; Huber, Daniel; Isaacson, Howard; Buchhave, Lars A.; Brugamyer, Erik; Robertson, Paul; Cochran, William D.; MacQueen, Phillip J.; Havel, Mathieu; Lucas, Phillip; Howell, Steve B.; Fischer, Debra; Quintana, Elisa; Ciardi, David R.

2014-11-01

Hot Jupiter systems provide unique observational constraints for migration models in multiple systems and binaries. We report on the discovery of the Kepler-424 (KOI-214) two-planet system, which consists of a transiting hot Jupiter (Kepler-424b) in a 3.31 day orbit accompanied by a more massive outer companion in an eccentric (e = 0.3) 223 day orbit. The outer giant planet, Kepler-424c, is not detected transiting the host star. The masses of both planets and the orbital parameters for the second planet were determined using precise radial velocity (RV) measurements from the Hobby-Eberly Telescope (HET) and its High Resolution Spectrograph (HRS). In stark contrast to smaller planets, hot Jupiters are predominantly found to be lacking any nearby additional planets; they appear to be "lonely". This might be a consequence of these systems having a highly dynamical past. The Kepler-424 planetary system has a hot Jupiter in a multiple system, similar to \\upsilon Andromedae. We also present our results for Kepler-422 (KOI-22), Kepler-77 (KOI-127), Kepler-43 (KOI-135), and Kepler-423 (KOI-183). These results are based on spectroscopic data collected with the Nordic Optical Telescope (NOT), the Keck 1 telescope, and HET. For all systems, we rule out false positives based on various follow-up observations, confirming the planetary nature of these companions. We performed a comparison with planetary evolutionary models which indicate that these five hot Jupiters have heavy element contents between 20 and 120 M ⊕. Based on observations obtained with the Hobby-Eberly Telescope, which is a joint project of the University of Texas at Austin, the Pennsylvania State University, Stanford University, Ludwig-Maximilians-Universität München, and Georg-August-Universität Göttingen.

Study of Extra-Solar Planets with the Advanced Fiber Optic Echelle

NASA Technical Reports Server (NTRS)

Noyes, Robert W.; Boyce, Joseph M. (Technical Monitor)

2002-01-01

This is the final report of NASA Grant NAG5-7505, for 'Study of Extra-solar Planets with the Advanced Fiber Optic Echelle'. This program was funded in response to our proposal submitted under NASA NRA 97-OSS-06, with a total period of performance from June 1, 1998 through Feb 28 2002. Principal Investigator is Robert W. Noyes; co-Investigators are Sylvain G. Korzennik (SAO), Peter Niserison (SAO), and Timothy M. Brown (High Altitude Observatory). Since the start of this program we have carried out more than 30 observing runs, typically of 5 to 7 days duration. We obtained a total of around 2000 usable observations of about 150 stars, where a typical observation consists of 3 exposures of 10 minutes each. Using this data base we detected thc two additional planetary companions to the star Upsilon Andromedae. This detection was made independently of, and essentially simultaneously with, a similar detection by the Berkeley group (Marcy et al): the fact that two data sets were completely independent and gave essentially the same orbital parameters for this three-planet system gave a strong confirmation of this important result. We also extended our previous detection of the planet orbiting Rho Coronae Borealis to get a better determination of its orbital eccentricity: e=0.13 +/- 0.05. We detected a new planet in orbit around the star HD 89744, with orbital period 256 days, semi-major axis 0.88 AU, eccentricity 0.70, and minimum mass m sini = 7.2 m(sub Jup). This discovery is significant because of the very high orbital eccentricity, arid also because HD 89744 has both high metallicity [Fe/H] and at the same time a low [C/Fe] abundance ratio.

Time-resolved radiation chemistry: Dynamics of electron attachment to uracil following UV excitation of iodide-uracil complexes

DOE Office of Scientific and Technical Information (OSTI.GOV)

King, Sarah B.; Yandell, Margaret A.; Stephansen, Anne B.

Electron attachment to uracil was investigated by applying time-resolved photoelectron imaging to iodide-uracil (I{sup –}U) complexes. In these studies, an ultraviolet pump pulse initiated charge transfer from the iodide to the uracil, and the resulting dynamics of the uracil temporary negative ion were probed. Five different excitation energies were used, 4.00 eV, 4.07 eV, 4.14 eV, 4.21 eV, and 4.66 eV. At the four lowest excitation energies, which lie near the vertical detachment energy of the I{sup –}U complex (4.11 eV), signatures of both the dipole bound (DB) as well as the valence bound (VB) anion of uracil were observed.more » In contrast, only the VB anion was observed at 4.66 eV, in agreement with previous experiments in this higher energy range. The early-time dynamics of both states were highly excitation energy dependent. The rise time of the DB anion signal was ∼250 fs at 4.00 eV and 4.07 eV, ∼120 fs at 4.14 eV and cross-correlation limited at 4.21 eV. The VB anion rise time also changed with excitation energy, ranging from 200 to 300 fs for excitation energies 4.00–4.21 eV, to a cross-correlation limited time at 4.66 eV. The results suggest that the DB state acts as a “doorway” state to the VB anion at 4.00–4.21 eV, while direct attachment to the VB anion occurs at 4.66 eV.« less

Insight on specificity of uracil permeases of the NAT/NCS2 family from analysis of the transporter encoded in the pyrimidine utilization operon of Escherichia coli.

PubMed

Botou, Maria; Lazou, Panayiota; Papakostas, Konstantinos; Lambrinidis, George; Evangelidis, Thomas; Mikros, Emmanuel; Frillingos, Stathis

2018-04-01

The uracil permease UraA of Escherichia coli is a structurally known prototype for the ubiquitous Nucleobase-Ascorbate Transporter (NAT) or Nucleobase-Cation Symporter-2 (NCS2) family and represents a well-defined subgroup of bacterial homologs that remain functionally unstudied. Here, we analyze four of these homologs, including RutG of E. coli which shares 35% identity with UraA and is encoded in the catabolic rut (pyrimidine utilization) operon. Using amplified expression in E. coli K-12, we show that RutG is a high-affinity permease for uracil, thymine and, at low efficiency, xanthine and recognizes also 5-fluorouracil and oxypurinol. In contrast, UraA and the homologs from Acinetobacter calcoaceticus and Aeromonas veronii are permeases specific for uracil and 5-fluorouracil. Molecular docking indicates that thymine is hindered from binding to UraA by a highly conserved Phe residue which is absent in RutG. Site-directed replacement of this Phe with Ala in the three uracil-specific homologs allows high-affinity recognition and/or transport of thymine, emulating the RutG profile. Furthermore, all RutG orthologs from enterobacteria retain an Ala at this position, implying that they can use both uracil and thymine and, possibly, xanthine as substrates and provide the bacterial cell with a range of catabolizable nucleobases. © 2018 John Wiley & Sons Ltd.

The Discovery of the b Quark at Fermilab in 1977: The Experiment Coordinator's Story

DOE R&D Accomplishments Database

Yoh, J.

1997-12-01

I present the history of the discovery of the Upsilon ({Upsilon}) particle (the first member of the b-quark family to be observed) at Fermilab in 1977 by the CFS (Columbia-Fermilab-Stony Brook collaboration) E288 experiment headed by Leon Lederman. We found the first evidence of the {Upsilon} in November 1976 in an early phase of E288. The subsequent discovery in the spring of 1977 resulted from an upgraded E288 the {mu}{mu}II phase, optimized for dimuons, with about 100 times the sensitivity of the previous investigatory dimuon phase (which had been optimized for dielectrons). The events leading to the discovery, the planning of {mu}{mu}II and the running, including a misadventure (the infamous Shunt Fire of May 1977), are described. Some discussions of the aftermath, a summary, and an acknowledgement list end this brief historical note.

attempted prebiotic synthesis of pseudouridine

NASA Astrophysics Data System (ADS)

DWORKIN, JASON P.

1997-08-01

Pseudouridine is a modified base found in all tRNA and rRNA. Hence, it is reasonable to think that pseudouridine was important in the early evolution, if not the origin, of life. Since uracil reacts rapidly with formaldehyde and other aldehydes at the C-5 position, it is plausible that pseudouridine could be synthesized in a similar way by the reaction of the C-5 of uracil with the C-1 of ribose. The determining factor is whether the ribose could react with the uracil faster than ribose decomposes. However, both rates are determined by the amount of free aldehyde in the ribose. Various plausible prebiotic reactions were investigated and none showed pseudouridine above the detection limit (<0.01%). Only unreacted uracil and ribose decomposition products could be observed. Thus the rate of addition of ribose to uracil is much slower than the decomposition of ribose under any reasonable prebiotic conditions. Unless efficient non-biological catalysts for any of these reactions exist, pseudouridine would not have been synthesized to any significant extent without the use of biologically produced enzymes.

Bacterial uracil modulates Drosophila DUOX-dependent gut immunity via Hedgehog-induced signaling endosomes.

PubMed

Lee, Kyung-Ah; Kim, Boram; Bhin, Jinhyuk; Kim, Do Hun; You, Hyejin; Kim, Eun-Kyoung; Kim, Sung-Hee; Ryu, Ji-Hwan; Hwang, Daehee; Lee, Won-Jae

2015-02-11

Genetic studies in Drosophila have demonstrated that generation of microbicidal reactive oxygen species (ROS) through the NADPH dual oxidase (DUOX) is a first line of defense in the gut epithelia. Bacterial uracil acts as DUOX-activating ligand through poorly understood mechanisms. Here, we show that the Hedgehog (Hh) signaling pathway modulates uracil-induced DUOX activation. Uracil-induced Hh signaling is required for intestinal expression of the calcium-dependent cell adhesion molecule Cadherin 99C (Cad99C) and subsequent Cad99C-dependent formation of endosomes. These endosomes play essential roles in uracil-induced ROS production by acting as signaling platforms for PLCβ/PKC/Ca2+-dependent DUOX activation. Animals with impaired Hh signaling exhibit abolished Cad99C-dependent endosome formation and reduced DUOX activity, resulting in high mortality during enteric infection. Importantly, endosome formation, DUOX activation, and normal host survival are restored by genetic reintroduction of Cad99C into enterocytes, demonstrating the important role for Hh signaling in host resistance to enteric infection. Copyright © 2015 Elsevier Inc. All rights reserved.

Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone

PubMed Central

Sheng, Jia; Zhang, Wen; Hassan, Abdalla E. A.; Gan, Jianhua; Soares, Alexei S.; Geng, Song; Ren, Yi; Huang, Zhen

2012-01-01

Natural RNAs, especially tRNAs, are extensively modified to tailor structure and function diversities. Uracil is the most modified nucleobase among all natural nucleobases. Interestingly, >76% of uracil modifications are located on its 5-position. We have investigated the natural 5-methoxy (5-O-CH3) modification of uracil in the context of A-form oligonucleotide duplex. Our X-ray crystal structure indicates first a H-bond formation between the uracil 5-O-CH3 and its 5′-phosphate. This novel H-bond is not observed when the oxygen of 5-O-CH3 is replaced with a larger atom (selenium or sulfur). The 5-O-CH3 modification does not cause significant structure and stability alterations. Moreover, our computational study is consistent with the experimental observation. The investigation on the uracil 5-position demonstrates the importance of this RNA modification at the atomic level. Our finding suggests a general interaction between the nucleobase and backbone and reveals a plausible function of the tRNA 5-O-CH3 modification, which might potentially rigidify the local conformation and facilitates translation. PMID:22641848

Attempted prebiotic synthesis of pseudouridine

NASA Technical Reports Server (NTRS)

Dworkin, J. P.; Miller, S. L. (Principal Investigator)

1997-01-01

Pseudouridine is a modified base found in all tRNA and rRNA. Hence, it is reasonable to think that pseudouridine was important in the early evolution, if not the origin, of life. Since uracil reacts rapidly with formaldehyde and other aldehydes at the C-5 position, it is plausible that pseudouridine could be synthesized in a similar way by the reaction of the C-5 of uracil with the C-1 of ribose. The determining factor is whether the ribose could react with the uracil faster than ribose decomposes. However, both rates are determined by the amount of free aldehyde in the ribose. Various plausible prebiotic reactions were investigated and none showed pseudouridine above the detection limit (<0.01%). Only unreacted uracil and ribose decomposition products could be observed. Thus the rate of addition of ribose to uracil is much slower than the decomposition of ribose under any reasonable prebiotic conditions. Unless efficient non-biological catalysts for any of these reactions exist, pseudouridine would not have been synthesized to any significant extent without the use of biologically produced enzymes.

A Comprehensive Model for the Monoceros Tidal Stream

DTIC Science & Technology

2005-06-10

stream that can be found in the literature. 5.1. The Triangulus/ Andromeda Stream In Figure 8 we show the location of the recent detected Tri/And tidal...recently discovered stream in Triangulus/ Andromeda as natural part of theMonoceros stream, both fitting accurately to the modeled kinematics and spatial

"The Andromeda Strain" as Science and Literature.

ERIC Educational Resources Information Center

Kaczmarek, Nancy

Well-written, with a flair for character development, and focusing on controversial issues, Michael Crichton's novel "The Andromeda Strain" can precipitate lively discussions in science, English, and social studies classes and can help students to integrate all three areas. English and science teachers can collaborate in a variety of…

Invasive Marine and Estuarine Animals of Hawai’i and other Pacific Islands

DTIC Science & Technology

2005-09-01

threat to fisheries and fisheries restoration operations. Another invasive jellyfish is the upside down jelly Cassiopea andromeda , a shallow-water form...Carybdea sivickisi Cubozoan ST Aurelia sp. Schyphozoan ST HI B Cassiopea andromeda Schyphozoan ST HI B Cassiopea medusa Schyphozoan HI B Phyllorhiza

Initial Results From the USNO Dispersed Fourier Transform Spectrograph

DTIC Science & Technology

2007-01-25

the full instrument bandpass. 5.2. k Andromedae and Geminorum To test whether the dFTS system can accurately detect RV variations in a stellar...prototype dFTS can measure stellar RVs with sufficient accuracy to find exoplanets. We also observed Andromedae (a three-planet system) and

Mapping the tidally disrupting Andromeda XXVII and its stellar stream

NASA Astrophysics Data System (ADS)

Preston, Janet; Collins, Michelle; Bonaca, Ana; Ibata, Rodrigo; Tollerud, Erik; Geha, Marla; PAndAS Collaboration

2017-03-01

Andromeda XXVII is a dwarf spheroidal galaxy in the outskirts of the Andromeda galaxy (M31). It appears to be dissolving in to the Northern arc of M31, and could be the remnant of a strong tidal disruption. In the upcoming months, our spectroscopic program, which has measured velocities for multiple stars within both the dwarf galaxy progenitor and its stream (using the Keck II DEIMOS telescope, as part of the PAndAS survey), will determine velocity dispersions, scale radii and metallicities of both the dwarf and the stream. This in turn may enable us to ascertain the progenitor mass profile and determine whether it is cusped or cored.

The rarity of Dark Matter Halos in medium-sized walls of the cosmic web

NASA Astrophysics Data System (ADS)

Goh, Tze; Primack, Joel R.; Lee, Christoph; Aragon-Calvo, Miguel A.; Behroozi, Peter

2017-01-01

In 2014, Marshall McCall mapped out our Local Sheet, the cosmic wall containing the Milk Way and Andromeda galaxies. We use the large new Bolshoi-Planck cosmological simulation to investigate how rare our type of Local Sheet is, with 2 nearby halos like those of Milky Way and Andromeda. The conclusion of our investigation is that the occurrence of a pair of galaxies the size of Milky Way and Andromeda near the center of a wall 8 mpc in diameter, with the pair of galaxies within 0.7 mpc/h of each other, is very rare : it makes up only 0.05% of all walls in the simulation.

Charm (and Beauty) Production at the Tevatron

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rademacker, Jonas; /Bristol U.

2007-11-01

The authors present recent results on heavy flavor production at Tevatron Run II for typically {approx} 1 fb{sup -1} of analyzed p{bar p} data at {radical}s = 1.96 TeV. This includes results on single and correlated open charm and bottom cross sections, charm pair production kinematics, J/{psi}, {psi}(2S) and {chi}{sub cJ} cross sections and polarization measurements in J/{psi}, {psi}(2S), {Upsilon}(1S), and {Upsilon}(2S).

Non-Equilibrium Turbulence Modeling for High Lift Aerodynamics

NASA Technical Reports Server (NTRS)

Durbin, P. A.

1998-01-01

This phase is discussed in ('Non linear kappa - epsilon - upsilon(sup 2) modeling with application to high lift', Application of the kappa - epsilon -upsilon(sup 2) model to multi-component airfoils'). Further results are presented in 'Non-linear upsilon(sup 2) - f modeling with application to high-lift' The ADI solution method in the initial implementation was very slow to converge on multi-zone chimera meshes. I modified the INS implementation to use GMRES. This provided improved convergence and less need for user intervention in the solution process. There were some difficulties with implementation into the NASA compressible codes, due to their use of approximate factorization. The Helmholtz equation for f is not an evolution equation, so it is not of the form assumed by the approximate factorization method. Although The Kalitzin implementation involved a new solution algorithm ('An implementation of the upsilon(sup 2) - f model with application to transonic flows'). The algorithm involves introducing a relaxation term in the f-equation so that it can be factored. The factorization can be into a plane and a line, with GMRES used in the plane. The NASA code already evaluated coefficients in planes, so no additional memory is required except that associated the the GMRES algorithm. So the scope of this project has expanded via these interactions. . The high-lift work has dovetailed into turbine applications.

USSR and Eastern Europe Scientific Abstracts, Geophysics, Astronomy and Space, Number 388

DTIC Science & Technology

1977-01-18

Andromeda and then using data for over 100 other systems. It was possible to clarify in great detail the structure of the most interesting galaxies of...Galaxy and the nebula Andromeda constitute parts of a common hypergalaxy. The observatory has a new 1.5-m telescope. It will enable Tyravere

COMPARING THE OBSERVABLE PROPERTIES OF DWARF GALAXIES ON AND OFF THE ANDROMEDA PLANE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Collins, Michelle L. M.; Martin, Nicolas F.; Rich, R. M.

The thin, extended planes of satellite galaxies detected around both the Milky Way and Andromeda are not a natural prediction of the Λ-cold dark matter paradigm. Galaxies in these distinct planes may have formed and evolved in a different way (e.g., tidally) from their off-plane neighbors. If this were the case, one would expect the on- and off-plane dwarf galaxies in Andromeda to have experienced different evolutionary histories, which should be reflected by the chemistries, dynamics, and star formation histories of the two populations. In this work, we present new, robust kinematic observations for two on-plane M31 dwarf spheroidal galaxiesmore » (And XVI and XVII) and compile and compare all available observational metrics for the on- and off-plane dwarfs to search for a signal that would corroborate such a hypothesis. We find that, barring their spatial alignment, the on- and off-plane Andromeda dwarf galaxies are indistinguishable from one another, arguing against vastly different formative and evolutionary histories for these two populations.« less

Spectroscopic study of uracil, 1-methyluracil and 1-methyl-4-thiouracil: Hydrogen bond interactions in crystals and ab-initio molecular dynamics

NASA Astrophysics Data System (ADS)

Brela, Mateusz Z.; Boczar, Marek; Malec, Leszek M.; Wójcik, Marek J.; Nakajima, Takahito

2018-05-01

Hydrogen bond networks in uracil, 1-methyluracil and 1-methyl-4-thiouracil were studied by ab initio molecular dynamics as well as analysis of the orbital interactions. The power spectra calculated by ab initio molecular dynamics for atoms involved in hydrogen bonds were analyzed. We calculated spectra by using anharmonic approximation based on the autocorrelation function of the atom positions obtained from the Born-Oppenheimer simulations. Our results show the differences between hydrogen bond networks in uracil and its methylated derivatives. The studied methylated derivatives, 1-methyluracil as well as 1-methyl-4-thiouracil, form dimeric structures in the crystal phase, while uracil does not form that kind of structures. The presence of sulfur atom instead oxygen atom reflects weakness of the hydrogen bonds that build dimers.

The PAndAS View of the Andromeda Satellite System. I. A Bayesian Search for Dwarf Galaxies Using Spatial and Color-Magnitude Information

NASA Astrophysics Data System (ADS)

Martin, Nicolas F.; Ibata, Rodrigo A.; McConnachie, Alan W.; Mackey, A. Dougal; Ferguson, Annette M. N.; Irwin, Michael J.; Lewis, Geraint F.; Fardal, Mark A.

2013-10-01

We present a generic algorithm to search for dwarf galaxies in photometric catalogs and apply it to the Pan-Andromeda Archaeological Survey (PAndAS). The algorithm is developed in a Bayesian framework and, contrary to most dwarf galaxy search codes, makes use of both the spatial and color-magnitude information of sources in a probabilistic approach. Accounting for the significant contamination from the Milky Way foreground and from the structured stellar halo of the Andromeda galaxy, we recover all known dwarf galaxies in the PAndAS footprint with high significance, even for the least luminous ones. Some Andromeda globular clusters are also recovered and, in one case, discovered. We publish a list of the 143 most significant detections yielded by the algorithm. The combined properties of the 39 most significant isolated detections show hints that at least some of these trace genuine dwarf galaxies, too faint to be individually detected. Follow-up observations by the community are mandatory to establish which are real members of the Andromeda satellite system. The search technique presented here will be used in an upcoming contribution to determine the PAndAS completeness limits for dwarf galaxies. Although here tuned to the search of dwarf galaxies in the PAndAS data, the algorithm can easily be adapted to the search for any localized overdensity whose properties can be modeled reliably in the parameter space of any catalog.

THE PAndAS VIEW OF THE ANDROMEDA SATELLITE SYSTEM. I. A BAYESIAN SEARCH FOR DWARF GALAXIES USING SPATIAL AND COLOR-MAGNITUDE INFORMATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, Nicolas F.; Ibata, Rodrigo A.; McConnachie, Alan W.

We present a generic algorithm to search for dwarf galaxies in photometric catalogs and apply it to the Pan-Andromeda Archaeological Survey (PAndAS). The algorithm is developed in a Bayesian framework and, contrary to most dwarf galaxy search codes, makes use of both the spatial and color-magnitude information of sources in a probabilistic approach. Accounting for the significant contamination from the Milky Way foreground and from the structured stellar halo of the Andromeda galaxy, we recover all known dwarf galaxies in the PAndAS footprint with high significance, even for the least luminous ones. Some Andromeda globular clusters are also recovered and,more » in one case, discovered. We publish a list of the 143 most significant detections yielded by the algorithm. The combined properties of the 39 most significant isolated detections show hints that at least some of these trace genuine dwarf galaxies, too faint to be individually detected. Follow-up observations by the community are mandatory to establish which are real members of the Andromeda satellite system. The search technique presented here will be used in an upcoming contribution to determine the PAndAS completeness limits for dwarf galaxies. Although here tuned to the search of dwarf galaxies in the PAndAS data, the algorithm can easily be adapted to the search for any localized overdensity whose properties can be modeled reliably in the parameter space of any catalog.« less

Specificity and Catalytic Mechanism in Family 5 Uracil DNA Glycosylase*

PubMed Central

Xia, Bo; Liu, Yinling; Li, Wei; Brice, Allyn R.; Dominy, Brian N.; Cao, Weiguo

2014-01-01

UDGb belongs to family 5 of the uracil DNA glycosylase (UDG) superfamily. Here, we report that family 5 UDGb from Thermus thermophilus HB8 is not only a uracil DNA glycosyase acting on G/U, T/U, C/U, and A/U base pairs, but also a hypoxanthine DNA glycosylase acting on G/I, T/I, and A/I base pairs and a xanthine DNA glycosylase acting on all double-stranded and single-stranded xanthine-containing DNA. Analysis of potentials of mean force indicates that the tendency of hypoxanthine base flipping follows the order of G/I > T/I, A/I > C/I, matching the trend of hypoxanthine DNA glycosylase activity observed in vitro. Genetic analysis indicates that family 5 UDGb can also act as an enzyme to remove uracil incorporated into DNA through the existence of dUTP in the nucleotide pool. Mutational analysis coupled with molecular modeling and molecular dynamics analysis reveals that although hydrogen bonding to O2 of uracil underlies the UDG activity in a dissociative fashion, Tth UDGb relies on multiple catalytic residues to facilitate its excision of hypoxanthine and xanthine. This study underscores the structural and functional diversity in the UDG superfamily. PMID:24838246

Transport of adenine, hypoxanthine and uracil into Escherichia coli.

PubMed Central

Burton, K

1977-01-01

Uptake of adenine, hypoxanthine and uracil by an uncA strain of Escherichia coli is inhibited by uncouplers or when phosphate in the medium is replaced by less than 1 mM-arsenate, indicating a need for both a protonmotive force and phosphorylated metabolites. The rate of uptake of adenine or hypoxanthine was not markedly affected by a genetic deficiency of purine nucleoside phosphorylase. In two mutants with undetected adenine phosphoribosyltransferase, the rate of adenine uptake was about 30% of that in their parent strain, and evidence was obtained to confirm that adenine had then been utilized via purine nucleoside phosphorylase. In a strain deficient in both enzymes adenine uptake was about 1% of that shown by wild-type strains. Uptake of hypoxanthine was similarly limited in a strain lacking purine nucleoside phosphorylase, hypoxanthine phosphoribosyltransferase and guanine phosphoribosyltransferase. Deficiency of uracil phosphoribosyltransferase severely limits uracil uptake, but the defect can be circumvented by addition of inosine, which presumably provides ribose 1-phosphate for reversal of uridine phosphorylase. The results indicate that there are porter systems for adenine, hypoxanthine and uracil dependent on a protonmotive force and facilitated by intracellular metabolism of the free bases. PMID:413544

A Critical Review on Clinical Application of Separation Techniques for Selective Recognition of Uracil and 5-Fluorouracil.

PubMed

Pandey, Khushaboo; Dubey, Rama Shankar; Prasad, Bhim Bali

2016-03-01

The most important objectives that are frequently found in bio-analytical chemistry involve applying tools to relevant medical/biological problems and refining these applications. Developing a reliable sample preparation step, for the medical and biological fields is another primary objective in analytical chemistry, in order to extract and isolate the analytes of interest from complex biological matrices. Since, main inborn errors of metabolism (IEM) diagnosable through uracil analysis and the therapeutic monitoring of toxic 5-fluoruracil (an important anti-cancerous drug) in dihydropyrimidine dehydrogenase deficient patients, require an ultra-sensitive, reproducible, selective, and accurate analytical techniques for their measurements. Therefore, keeping in view, the diagnostic value of uracil and 5-fluoruracil measurements, this article refines several analytical techniques involved in selective recognition and quantification of uracil and 5-fluoruracil from biological and pharmaceutical samples. The prospective study revealed that implementation of molecularly imprinted polymer as a solid-phase material for sample preparation and preconcentration of uracil and 5-fluoruracil had proven to be effective as it could obviates problems related to tedious separation techniques, owing to protein binding and drastic interferences, from the complex matrices in real samples such as blood plasma, serum samples.

Scaffold hopping: exploration of acetanilide-containing uracil analogues as potential NNRTIs.

PubMed

Babkov, Denis A; Valuev-Elliston, Vladimir T; Paramonova, Maria P; Ozerov, Alexander A; Ivanov, Alexander V; Chizhov, Alexander O; Khandazhinskaya, Anastasia L; Kochetkov, Sergey N; Balzarini, Jan; Daelemans, Dirk; Pannecouque, Christophe; Seley-Radtke, Katherine L; Novikov, Mikhail S

2015-03-01

In order to identify novel nonnucleoside inhibitors of HIV-1 reverse transcriptase two series of amide-containing uracil derivatives were designed as hybrids of two scaffolds of previously reported inhibitors. Subsequent biological evaluation confirmed acetamide uracil derivatives 15a-k as selective micromolar NNRTIs with a first generation-like resistance profile. Molecular modeling of the most active compounds 15c and 15i was employed to provide insight on their inhibitory properties and direct future design efforts. Copyright © 2015 Elsevier Ltd. All rights reserved.

Perseus

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

(abbrev. Per, gen. Persei; area 615 sq. deg.) A northern constellation which lies between Andromeda and Auriga, and culminates at midnight in early November. It is named after the hero in Greek mythology who beheaded the Gorgon Medusa and rescued Andromeda from being sacrificed to the sea monster Cetus. Its brightest stars were cataloged by Ptolemy (c. AD 100-175) in the Almagest....

Andromeda

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

(abbrev. And, gen. Andromedae; area 722 sq. deg.) A northern constellation that lies between Perseus and Pegasus, and culminates at midnight in early October. It is named after the daughter of King Cepheus and Queen Cassiopeia in Greek mythology, who was rescued by Perseus from being sacrificed to the sea monster Cetus, and is usually shown on early celestial charts as a chained maiden. Its brigh...

Cassiopeia

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

(abbrev. Cas, gen. Cassiopeiae; area 598 sq. deg.) A northern constellation which lies between Cepheus and Andromeda, and culminates at midnight in early October. It is named after Queen Cassiopeia, wife of King Cepheus and mother of Andromeda in Greek mythology, and is usually shown on early celestial charts as a seated figure. Its brightest stars were cataloged by Ptolemy (c. AD 100-175) in the ...

Extraterrestrial Radio Noise and Its Effect on Radar Performance

DTIC Science & Technology

1983-08-01

by the function, Sa f-0.81. TABLE 1 EQUATORIAL COORDINATES OF MAJOR DISCRETE RADIO STARS Right Constellation Declination Ascension Andromeda 400 50...ASSIOPEIA( 4 - - -VIRGO(e• TAURU -, ,-,CYGNUS-Aia 0 ~PERSEUS(O)’i ANDROMEDA (a) 101 - z li izi ii- !liisl I I i 10-26 10-25 10-24 10-2 3 10-2 2

Observations of the andromeda galaxy at 11-centimeter wavelength.

PubMed

Cooley, R C; Roberts, M S; Swenson, G W

1967-05-26

Observations of the Andromeda galaxy (M31) at 2695 megahertz reveal more detail than do earlier measurements at lower frequency. The region is highly confused but there is apparently a more dense clustering of sources within the optical outline of the galaxy than without. One source (OA33) near M31 has an interesting. flat spectrum.

Nature of Cirrus

DTIC Science & Technology

1992-12-23

shown in figures 12 and 13. In figure 12 a 60 Pm image of the Andromeda nebula M 31 as generated using HIRAS is shown. The resolution in this image...Cambridge, UK 17 Figure 12: The Andromeda Nebula (M31) at 60 pim as processed by HIRAS. The size of the tmage is 2.80 . The resolution is about 1’ (factor 5

Andromeda Galaxy: Extension of the 610.5-Megacyle-per-Second Map.

PubMed

Dickel, J R; Macleod, J M; Swenson, G W

1965-11-12

A radio map of the Andromeda galaxy, M 31, made with the 400-foot (122 m) radio telescope at the University of Illinois has been extended northward to cover the full optical extent of the galaxy. Several condensations of radio emission appear along the major axis of the galaxy, and other radio features are resolved.

Combined effects of π-π stacking and hydrogen bonding on the (N1) acidity of uracil and hydrolysis of 2'-deoxyuridine.

PubMed

Kellie, Jennifer L; Navarro-Whyte, Lex; Carvey, Matthew T; Wetmore, Stacey D

2012-03-01

M06-2X/6-31+G(d,p) is used to study the simultaneous effects of π-π stacking interactions with phenylalanine (modeled as benzene) and hydrogen bonding with small molecules (HF, H(2)O, and NH(3)) on the N1 acidity of uracil and the hydrolytic deglycosylation of 2'-deoxyuridine (dU) (facilitated by fully (OH(-)) or partially (HCOO(-)···H(2)O) activated water). When phenylalanine is complexed with isolated uracil, the proton affinity of all acceptor sites significantly increases (by up to 28 kJ mol(-1)), while the N1 acidity slightly decreases (by ~6 kJ mol(-1)). When small molecules are hydrogen bound to uracil, addition of the phenylalanine ring can increase or decrease the acidity of uracil depending on the number and nature (acidity) of the molecules bound. Furthermore, a strong correlation between the effects of π-π stacking on the acidity of U and the dU deglycosylation reaction energetics is found, where the hydrolysis barrier can increase or decrease depending on the nature and number of small molecules bound, the nucleophile considered (which dictates the negative charge on U in the transition state), and the polarity of the (bulk) environment. These findings emphasize that the catalytic (or anticatalytic) role of the active-site aromatic amino acid residues is highly dependent on the situation under consideration. In the case of uracil-DNA glycosylase (UNG), which catalyzes the hydrolytic excision of uracil from DNA, the type of discrete hydrogen-bonding interactions with U, the nature of the nucleophile, and the anticipated weak, nonpolar environment in the active site suggest that phenylalanine will be slightly anticatalytic in the chemical step, and therefore experimentally observed contributions to catalysis may entirely result from associated structural changes that occur prior to deglycosylation.

Spectroscopic study of uracil, 1-methyluracil and 1-methyl-4-thiouracil: Hydrogen bond interactions in crystals and ab-initio molecular dynamics.

PubMed

Brela, Mateusz Z; Boczar, Marek; Malec, Leszek M; Wójcik, Marek J; Nakajima, Takahito

2018-05-15

Hydrogen bond networks in uracil, 1-methyluracil and 1-methyl-4-thiouracil were studied by ab initio molecular dynamics as well as analysis of the orbital interactions. The power spectra calculated by ab initio molecular dynamics for atoms involved in hydrogen bonds were analyzed. We calculated spectra by using anharmonic approximation based on the autocorrelation function of the atom positions obtained from the Born-Oppenheimer simulations. Our results show the differences between hydrogen bond networks in uracil and its methylated derivatives. The studied methylated derivatives, 1-methyluracil as well as 1-methyl-4-thiouracil, form dimeric structures in the crystal phase, while uracil does not form that kind of structures. The presence of sulfur atom instead oxygen atom reflects weakness of the hydrogen bonds that build dimers. Copyright © 2018 Elsevier B.V. All rights reserved.

Analysis of uracil phosphoribosyltransferase expression in Mycobacterium tuberculosis and evaluation of upp knockout strain in infected mice.

PubMed

Villela, Anne Drumond; Pham, Ha; Jones, Victoria; Grzegorzewicz, Anna E; Rodrigues-Junior, Valnês da Silva; Campos, Maria Martha; Basso, Luiz Augusto; Jackson, Mary; Santos, Diógenes Santiago

2017-02-01

The upp (Rv3309c)-encoded uracil phosphoribosyltransferase from Mycobacterium tuberculosis (MtUPRT) converts uracil and 5-phosphoribosyl-α-1-pyrophosphate into pyrophosphate and uridine 5΄-monophosphate, the precursor of all pyrimidine nucleotides. A M. tuberculosis knockout strain for upp gene was generated by allelic replacement. Knockout and complemented strains were validated by a functional assay of uracil incorporation. A basal level of MtUPRT expression is shown to be independent of either growth medium used, addition of bases, or oxygen presence/absence. The upp disruption does not affect M. tuberculosis growth in Middlebrook 7H9 medium, and it is not required for M. tuberculosis virulence in a mouse model of infection. Thus, MtUPRT is unlikely to be a good target for drugs against M. tuberculosis. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Increased postischemic brain injury in mice deficient in uracil-DNA glycosylase

PubMed Central

Endres, Matthias; Biniszkiewicz, Detlev; Sobol, Robert W.; Harms, Christoph; Ahmadi, Michael; Lipski, Andreas; Katchanov, Juri; Mergenthaler, Philipp; Dirnagl, Ulrich; Wilson, Samuel H.; Meisel, Andreas; Jaenisch, Rudolf

2004-01-01

Uracil-DNA glycosylase (UNG) is involved in base excision repair of aberrant uracil residues in nuclear and mitochondrial DNA. Ung knockout mice generated by gene targeting are viable, fertile, and phenotypically normal and have regular mutation rates. However, when exposed to a nitric oxide donor, Ung–/– fibroblasts show an increase in the uracil/cytosine ratio in the genome and augmented cell death. After combined oxygen-glucose deprivation, Ung–/– primary cortical neurons have increased vulnerability to cell death, which is associated with early mitochondrial dysfunction. In vivo, UNG expression and activity are low in brains of naive WT mice but increase significantly after reversible middle cerebral artery occlusion and reperfusion. Moreover, major increases in infarct size are observed in Ung–/– mice compared with littermate control mice. In conclusion, our results provide compelling evidence that UNG is of major importance for tissue repair after brain ischemia. PMID:15199406

On the nature of upsilon Sagittarii

NASA Technical Reports Server (NTRS)

Schoenberner, D.; Drilling, J. S.

1982-01-01

An explanation for the nature and evolution of the extremely hydrogen deficient binary Upsilon Sagittarii which is consistent with all observational and theoretical facts. First, the system goes through a Case B mass exchange in which most of the hydrogen rich envelope of a massive primary (5 to 14 solar masses) is lost. The remaining envelope still contains about 50% hydrogen (by number), but is now of negligible mass, so that the star evolves like a pure helium star. If its mass is between 1 and 2 solar masses the star reaches low surface temperatures and becomes a supergiant before the onset of carbon burning. This star (the original primary) then fills its Roche lobe a second time, spilling its now helium rich envelope over onto the secondary (Case BB mass exchange). It is argued that Upsilon Sagrittarii is in this state at the present time, and that the visible star is an evolved helium star of about 1 solar mass with a degenerate carbon-oxygen core and a helium burning shell which provides the high luminosity.

Participation in the ARGUS experiment at the DORIS Collider at DESY, Hamburg, Germany and participation in the AMY experiment at the Tristan Collider in Tsukuba, Japan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Darden, C.; Rosenfeld, C.

1990-01-01

This paper discusses electron-positron annihilation at high energy. This work began in 1977 with the DASP II Collaboration at the DORIS storage ring of the DESY Laboratory in Hamburg. The collaboration's first publication reported the observation of the narrow {Upsilon} resonance at 9.46 GeV, confirming the original observation of this state in proton-nucleus collisions at Fermilab. To enable investigations of the {Upsilon} family of resonances the DORIS ring was rebuilt for reliable operation at the top of its energy range where the {Upsilon} states are accessible. In addition a new detector, ARGUS, was installed at one interaction region. This papermore » also discusses the AMY Collaboration which investigates electron-positron annihilation at energies from 50 to 65 GeV. The AMY detector is in the beam of the TRISTAN collider of the KEK Laboratory in Tsukuba, Japan.« less

Reply by the Authors to C. K. W. Tam

NASA Technical Reports Server (NTRS)

Morris, Philip J.; Farassat, F.

2002-01-01

The prediction of noise generation and radiation by turbulence has been the subject of continuous research for over fifty years. The essential problem is how to model the noise sources when one s knowledge of the detailed space-time properties of the turbulence is limited. We attempted to provide a comparison of models based on acoustic analogies and recent alternative models. Our goal was to demonstrate that the predictive capabilities of any model are based on the choice of the turbulence property that is modeled as a source of noise. Our general definition of an acoustic analogy is a rearrangement of the equations of motion into the form L(u) = Q, where L is a linear operator that reduces to an acoustic propagation operator outside a region upsilon; u is a variable that reduces to acoustic pressure (or a related linear acoustic variable) outside upsilon; and Q is a source term that can be meaningfully estimated without knowing u and tends to zero outside upsilon.

VizieR Online Data Catalog: Nebular [OIII] collision strengths - SS3 (Storey+, 2015)

NASA Astrophysics Data System (ADS)

Storey, P. J.; Sochi, T.

2015-03-01

The data set consists of ten Upsilon files labeled 'up_mn.dat' and ten Downsilon files labeled 'do_mn.dat' where m=1,2,3,4 and n=2,3,4,5 with m

LACERTA I AND CASSIOPEIA III. TWO LUMINOUS AND DISTANT ANDROMEDA SATELLITE DWARF GALAXIES FOUND IN THE 3{pi} PAN-STARRS1 SURVEY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, Nicolas F.; Laevens, Benjamin P. M.; Slater, Colin T.

We report the discovery of two new dwarf galaxies, Lacerta I/Andromeda XXXI (Lac I/And XXXI) and Cassiopeia III/Andromeda XXXII (Cas III/And XXXII), in stacked Pan-STARRS1 r{sub P1}- and i{sub P1}-band imaging data. Both are luminous systems (M{sub V} {approx} -12) located at projected distances of 20. Degree-Sign 3 and 10. Degree-Sign 5 from M31. Lac I and Cas III are likely satellites of the Andromeda galaxy with heliocentric distances of 756{sup +44}{sub -28} kpc and 772{sup +61}{sub -56} kpc, respectively, and corresponding M31-centric distances of 275 {+-} 7 kpc and 144{sup +6}{sub -4} kpc. The brightest of recent Local Groupmore » member discoveries, these two new dwarf galaxies owe their late discovery to their large sizes (r{sub h} = 4.2{sup +0.4}{sub -0.5} arcmin or 912{sup +124}{sub -93} pc for Lac I; r{sub h} = 6.5{sup +1.2}{sub -1.0} arcmin or 1456 {+-} 267 pc for Cas III) and consequently low surface brightness ({mu}{sub 0} {approx} 26.0 mag arcsec{sup -2}), as well as to the lack of a systematic survey of regions at large radii from M31, close to the Galactic plane. This latter limitation is now alleviated by the 3{pi} Pan-STARRS1 survey, which could lead to the discovery of other distant Andromeda satellite dwarf galaxies.« less

HUBBLE SPIES GLOBULAR CLUSTER IN NEIGHBORING GALAXY

NASA Technical Reports Server (NTRS)

2002-01-01

Hubble Space Telescope has captured a view of a globular cluster called G1, a large, bright ball of light in the center of the photograph consisting of at least 300,000 old stars. G1, also known as Mayall II, orbits the Andromeda galaxy (M31), the nearest major spiral galaxy to our Milky Way. Located 130,000 light-years from Andromeda's nucleus, G1 is the brightest globular cluster in the Local Group of galaxies. The Local Group consists of about 20 nearby galaxies, including the Milky Way. The crisp image is comparable to ground-based telescope views of similar clusters orbiting the Milky Way. The Andromeda cluster, however, is nearly 100 times farther away. A glimpse into the cluster's finer details allow astronomers to see its fainter helium-burning stars whose temperatures and brightnesses show that this cluster in Andromeda and the oldest Milky Way clusters have approximately the same age. These clusters probably were formed shortly after the beginning of the universe, providing astronomers with a record of the earliest era of galaxy formation. During the next two years, astronomers will use Hubble to study about 20 more globular clusters in Andromeda. The color picture was assembled from separate images taken in visible and near-infrared wavelengths taken in July of 1994. CREDIT: Michael Rich, Kenneth Mighell, and James D. Neill (Columbia University), and Wendy Freedman (Carnegie Observatories), and NASA Image files in GIF and JPEG format and captions may be accessed on Internet via anonymous ftp from oposite.stsci.edu in /pubinfo.

The Andromeda galaxy in gamma-rays

NASA Technical Reports Server (NTRS)

Oezel, M. E.; Berkhuijsen, E. M.

1987-01-01

Implications of high-energy gamma-ray observations of the Andromeda galaxy with the next generation of satellites Gamma-1 and GRO are discussed in the context of the origin of cosmic rays and gamma-ray processes. The present estimate of the total gamma-ray flux of this galaxy at energies above 100 MeV is a factor of about three less than previous estimates.

JPL-20180201-WHATSUf-0001-Whats Up February 2018

NASA Image and Video Library

2018-02-01

Monthly series for amateur astronomers. February features "celestial pairs" in honor of Valentine's Day. Constellation pairs: Perseus and Andromeda, Orion and the Pleiades. Star pairs: Pollux and Castor, Rigel and Rigel B, Mintaka and its companion star. Plus the moon pairs with Pollux and Castor and with the Pleiades. Includes animation of the myths of Perseus, Andromeda, Orion and the Pleiades.

On the stability of satellite planes - I. Effects of mass, velocity, halo shape and alignment

NASA Astrophysics Data System (ADS)

Fernando, Nuwanthika; Arias, Veronica; Guglielmo, Magda; Lewis, Geraint F.; Ibata, Rodrigo A.; Power, Chris

2017-02-01

The recently discovered vast thin plane of dwarf satellites orbiting the Andromeda Galaxy (M31) adds to the mystery of the small-scale distribution of the Local Group's galaxy population. Such well-defined planar structures are apparently rare occurrences in cold dark matter cosmological simulations, and we lack a coherent explanation of their formation and existence. In this paper, we explore the long-term survivability of thin planes of dwarfs in galactic haloes, focusing, in particular, on systems mimicking the observed Andromeda distribution. The key results show that, in general, planes of dwarf galaxies are fragile, sensitive to the shape of the dark matter halo and other perturbing effects. In fact, long-lived planes of satellites only exist in polar orbits in spherical dark matter haloes, presenting a challenge to the observed Andromeda plane that is significantly tilted with respect to the optical disc. Our conclusion is that, in the standard cosmological models, planes of satellites are generally short lived, and hence we must be located at a relatively special time in the evolution of the Andromeda Plane, lucky enough to see its coherent pattern.

Persian Gulf Jellyfish (Cassiopea andromeda) Venom Fractions Induce Selective Injury and Cytochrome C Release in Mitochondria Obtained from Breast Adenocarcinoma Patients

PubMed

Mirshamsi, Mohammad Reza; Omranipour, Ramesh; Vazirizadeh, Amir; Fakhri, Amir; Zangeneh, Fatemeh; Mohebbi, Gholam Hussain; Seyedian, Ramin; Pourahmad, Jalal

2017-01-01

Objective: This study was conducted to investigate whether fractions of jellyfish Cassiope andromeda venom, could selectively induce toxicity on mitochondria isolated from cancer tissue of patients with breast adenocarcinomas. Methods: Firstly, we extracted two fractions, (f1 and f2) from crude jellyfish venom by gel filtration on Sephadex G-200.Then different dilutions of these extracted fractions were applied to mitochondria isolated from human breast tumoral- and extra-tumoral tissues. Parameters of mitochondrial toxicity including generation of reactive oxygen species (ROS), mitochondrial membrane potential (MMP) collapse, swelling, cytochrome c release, activation of caspase3 and apoptosis were then assayed. Result: Our results demonstrate that fraction 2 of Cassiopea andromeda crude venom significantly (P<0.05) decreased mitochondrial succinate dehydrogenase activity, increased mitochondrial ROS production, induced mitochondrial swelling, MMP collapse and cytochrome c release, activated caspase3 and induced apoptosis only in tumoral mitochondria, and not in mitochondria obtained from extra-tumoral tissue (P<0.05). Conclusion: In conclusion this study suggested that fraction 2 of Cassiopea andromeda crude venom selectively induces ROS mediated cytotoxicity by directly targeting mitochondria isolated from human breast tumor tissue. Creative Commons Attribution License

Persian Gulf Jellyfish (Cassiopea andromeda) Venom Fractions Induce Selective Injury and Cytochrome C Release in Mitochondria Obtained from Breast Adenocarcinoma Patients

PubMed Central

Mirshamsi, Mohammad Reza; Omranipour, Ramesh; Vazirizadeh, Amir; Fakhri, Amir; Zangeneh, Fatemeh; Mohebbi, Gholam Hussain; Seyedian, Ramin; Pourahmad, Jalal

2017-01-01

Objective: This study was conducted to investigate whether fractions of jellyfish Cassiope andromeda venom, could selectively induce toxicity on mitochondria isolated from cancer tissue of patients with breast adenocarcinomas. Methods: Firstly, we extracted two fractions, (f1 and f2) from crude jellyfish venom by gel filtration on Sephadex G-200. Then different dilutions of these extracted fractions were applied to mitochondria isolated from human breast tumoral- and extra-tumoral tissues. Parameters of mitochondrial toxicity including generation of reactive oxygen species (ROS), mitochondrial membrane potential (MMP) collapse, swelling, cytochrome c release, activation of caspase3 and apoptosis were then assayed. Result: Our results demonstrate that fraction 2 of Cassiopea andromeda crude venom significantly (P<0.05) decreased mitochondrial succinate dehydrogenase activity, increased mitochondrial ROS production, induced mitochondrial swelling, MMP collapse and cytochrome c release, activated caspase3 and induced apoptosis only in tumoral mitochondria, and not in mitochondria obtained from extra-tumoral tissue (P<0.05). Conclusion: In conclusion this study suggested that fraction 2 of Cassiopea andromeda crude venom selectively induces ROS mediated cytotoxicity by directly targeting mitochondria isolated from human breast tumor tissue. PMID:28240847

Andromeda Galaxy

NASA Technical Reports Server (NTRS)

2003-01-01

[figure removed for brevity, see original site]

This image is a Galaxy Evolution Explorer observation of the large galaxy in Andromeda, Messier 31. The Andromeda galaxy is the most massive in the local group of galaxies that includes our Milky Way. Andromeda is the nearest large galaxy to our own. The image is a mosaic of 10 separate Galaxy Evolution Explorer images taken in September, 2003. The color image (with near ultraviolet shown by red and far ultraviolet shown by blue) shows blue regions of young, hot, high mass stars tracing out the spiral arms where star formation is occurring, and the central orange-white 'bulge' of old, cooler stars formed long ago. The star forming arms of Messier 31 are unusual in being quite circular rather than the usual spiral shape. Several companion galaxies can also be seen. These include Messier 32, a dwarf elliptical galaxy directly below the central bulge and just outside the spiral arms, and Messier 110 (M110), which is above and to the right of the center. M110 has an unusual far ultraviolet bright core in an otherwise 'red,' old star halo. Many other regions of star formation can be seen far outside the main body of the galaxy.

Chandra X-Ray Observatory Image of Andromeda Galaxy

NASA Technical Reports Server (NTRS)

1999-01-01

Chandra X-Ray Observatory took this first x-ray picture of the Andromeda Galaxy (M31) on October 13, 1999. The blue dot in the center of the image is a 'cool' million-degree x-ray source where a supermassive black hole with the mass of 30-million suns is located. The x-rays are produced by matter furneling toward the black hole. Numerous other hotter x-ray sources are also apparent. Most of these are probably due to x-ray binary systems, in which a neutron star or black hole is in close orbit around a normal star. While the gas falling into the central black hole is cool, it is only cool by comparison to the 100 other x-ray sources in the Andromeda Galaxy. To be detected by an x-ray telescope, the gas must have a temperature of more than a million degrees. The Andromeda Galaxy is our nearest neighbor spiral galaxy at a distance of two million light years. It is similar to our own Milky Way in size, shape, and also contains a supermassive black hole at the center. (Photo Credit: NASA/CXC/SAO/S. Murray, M. Garcia)

Uracil misincorporation into DNA and folic acid supplementation

USDA-ARS?s Scientific Manuscript database

BACKGROUND: Folate deficiency decreases thymidylate synthesis from deoxyuridylate, which results in an imbalance of deoxyribonucleotide that may lead to excessive uracil misincorporation (UrMis) into DNA during replication and repair. OBJECTIVE: We evaluated the relation between UrMis in different ...

Conditionally Pathogenic Gut Microbes Promote Larval Growth by Increasing Redox-Dependent Fat Storage in High-Sugar Diet-Fed Drosophila.

PubMed

Whon, Tae Woong; Shin, Na-Ri; Jung, Mi-Ja; Hyun, Dong-Wook; Kim, Hyun Sik; Kim, Pil Soo; Bae, Jin-Woo

2017-12-01

Changes in the composition of the gut microbiota contribute to the development of obesity and subsequent complications that are associated with metabolic syndrome. However, the role of increased numbers of certain bacterial species during the progress of obesity and factor(s) controlling the community structure of gut microbiota remain unclear. Here, we demonstrate the inter-relationship between Drosophila melanogaster and their resident gut microbiota under chronic high-sugar diet (HSD) conditions. Chronic feeding of an HSD to Drosophila resulted in a predominance of resident uracil-secreting bacteria in the gut. Axenic insects mono-associated with uracil-secreting bacteria or supplemented with uracil under HSD conditions promoted larval development. Redox signaling induced by bacterial uracil promoted larval growth by regulating sugar and lipid metabolism via activation of p38a mitogen-activated protein kinase. The present study identified a new redox-dependent mechanism by which uracil-secreting bacteria (previously regarded as opportunistic pathobionts) protect the host from metabolic perturbation under chronic HSD conditions. These results illustrate how Drosophila and gut microbes form a symbiotic relationship under stress conditions, and changes in the gut microbiota play an important role in alleviating deleterious diet-derived effects such as hyperglycemia. Antioxid. Redox Signal. 27, 1361-1380.

A Dwarf Dissolving? - A Kinematic Analysis of Andromeda XXVII and the Northern Arc

NASA Astrophysics Data System (ADS)

Collins, Michelle; Rich, R. M.; Chapman, S. C.; Ibata, R.; Irwin, M.; McConnachie, A. W.

2013-01-01

We report internal kinematics for an unusual M31 dwarf spheroidal galaxy, And XXVII, which is superposed against the Northern Arc Stream feature, isolated in the PandAS (Pan-Andromeda Archaeological Survey). In contrast to the coherent, cold velocity fields of most Andromeda dwarf spheroidals, And XXVII has a trimodal velocity distribution spanning 100 km/sec, with a relatively cold central peak at -530 km/sec , and a velocity dispersion of sigma= 8 km/sec. While all of the candidate members are < 2' (or approximately one half light radii, ~600 pc) from the core, the full velocity range is not consistent with a system of luminosity Mv=-7.9. We propose that And XXVII may be in the process of dissolving into the Northern Arc.

Diffusion and chaos from near AdS 2 horizons

DOE PAGES

Blake, Mike; Donos, Aristomenis

2017-02-03

We calculate the thermal diffusivity D =more » $$\\kappa/c_\\rho$$ and butterfy velocity $$\\upsilon_\\beta$$ in holographic models that flow to $$AdS_2$$ x $R^d$ fixed points in the infra-red. We show that both these quantities are governed by the same irrelevant deformation of $$AdS_2$$ and hence establish a simple relationship between them. When this deformation corresponds to a universal dilaton mode of dimension $$\\Delta$$ = 2 then this relationship is always given by D = $$\\upsilon_B^2$$/(2$$\\pi$$T).« less

Design, synthesis, and anti-HIV-1 activity of 1-aromatic methyl-substituted 3-(3,5-dimethylbenzyl)uracil and N-3,5-dimethylbenzyl-substituted urea derivatives.

PubMed

Sakakibara, Norikazu; Baba, Masanori; Okamoto, Mika; Toyama, Masaaki; Demizu, Yosuke; Misawa, Takashi; Kurihara, Masaaki; Irie, Kohji; Kato, Yoshihisa; Maruyama, Tokumi

2015-02-01

A new series of 1-aromatic methyl-substituted 3-(3,5-dimethylbenzyl)uracil and N-3,5-dimethylbenzyl-substituted urea derivatives were synthesized and evaluated as non-nucleoside HIV-1 reverse transcriptase inhibitors. A series of new 6-azido and 6-amino derivatives of 1-substituted-3-(3,5-dimethylbenzyl)uracils were synthesized using our previously reported method, and three acyclic derivatives were synthesized from urea. The anti-HIV-1 activities of these compounds were determined based on the inhibition of virus-induced cytopathogenicity in MT-4 cells. The cytotoxicities of the compounds were evaluated using the viability of mock-infected cells. Some of these compounds showed good-to-moderate activities against HIV-1 with half maximal effective concentration (EC50) values in the submicromolar or subnanomolar range. Compared with emivirine, compound 6-amino-3-(3,5-dimethylbenzyl)-1-(4-aminobenzyl)uracil showed significant anti-HIV-1 activity with an EC50 value of 10 nM and a high selectivity index of 1923. Preliminary structure-activity relationship studies and molecular modeling analyses were carried out to explore the major interactions between HIV-1 reverse transcriptase and the potent inhibitor 6-amino-3-(3,5-dimethylbenzyl)-1-(4-aminobenzyl)uracil; these results may be important for further development of this class of compounds as anti-HIV-1 agents. The excellent activity of 6-amino-3-(3,5-dimethylbenzyl)-1-(4-aminobenzyl)uracil (EC50: 0.010 ± 0.006 µM, SI: >1923) may serve as the basis for conducting further investigations on the behavior of this class of compounds against drug-resistant mutants. © The Author(s) 2015 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.

Design, synthesis, and anti-HIV-1 activity of 1-aromatic methyl-substituted 3-(3,5-dimethylbenzyl)uracil and N-3,5-dimethylbenzyl-substituted urea derivatives

PubMed Central

Sakakibara, Norikazu; Baba, Masanori; Okamoto, Mika; Toyama, Masaaki; Demizu, Yosuke; Misawa, Takashi; Kurihara, Masaaki; Irie, Kohji; Kato, Yoshihisa; Maruyama, Tokumi

2015-01-01

Background A new series of 1-aromatic methyl-substituted 3-(3,5-dimethylbenzyl)uracil and N-3,5-dimethylbenzyl-substituted urea derivatives were synthesized and evaluated as non-nucleoside HIV-1 reverse transcriptase inhibitors. Methods A series of new 6-azido and 6-amino derivatives of 1-substituted-3-(3,5-dimethylbenzyl)uracils were synthesized using our previously reported method, and three acyclic derivatives were synthesized from urea. The anti-HIV-1 activities of these compounds were determined based on the inhibition of virus-induced cytopathogenicity in MT-4 cells. The cytotoxicities of the compounds were evaluated using the viability of mock-infected cells. Results Some of these compounds showed good-to-moderate activities against HIV-1 with half maximal effective concentration (EC50) values in the submicromolar or subnanomolar range. Compared with emivirine, compound 6-amino-3-(3,5-dimethylbenzyl)-1-(4-aminobenzyl)uracil showed significant anti-HIV-1 activity with an EC50 value of 10 nM and a high selectivity index of 1923. Preliminary structure–activity relationship studies and molecular modeling analyses were carried out to explore the major interactions between HIV-1 reverse transcriptase and the potent inhibitor 6-amino-3-(3,5-dimethylbenzyl)-1-(4-aminobenzyl)uracil; these results may be important for further development of this class of compounds as anti-HIV-1 agents. Conclusion The excellent activity of 6-amino-3-(3,5-dimethylbenzyl)-1-(4-aminobenzyl)uracil (EC50: 0.010 ± 0.006 µM, SI: >1923) may serve as the basis for conducting further investigations on the behavior of this class of compounds against drug-resistant mutants. PMID:26149262

Effect of pH and temperature on the stability of UV-induced repairable pyrimidine hydrates in DNA.

PubMed

O'Donnell, R E; Boorstein, R J; Cunningham, R P; Teebor, G W

1994-08-23

UV irradiation of cytosine yields 6-hydroxy-5,6-dihydrocytosine (cytosine hydrate) whether the cytosine is in solution as base, nucleoside, or nucleotide or on the DNA backbone. Cytosine hydrate decomposes by elimination of water, yielding cytosine, or by irreversible deamination, yielding uracil hydrate, which, in turn, decomposes by dehydration yielding uracil. To determine how pH and temperature affect these decomposition reactions, alternating poly(dG-[3H]dC) copolymer was irradiated at 254 nm and incubated under different conditions of pH and temperature. The cytosine hydrate and uracil hydrate content of the DNA was determined by the use of Escherichia coli endonuclease III, which releases pyrimidine hydrates from DNA by virtue of its DNA glycosylase activity. Uracil content was determined by using uracil-DNA glycosylase. The rate of decomposition of cytosine hydrate to cytosine was determined at 4 temperatures at pH 3.1, 5.4, and 7.4. The Ea was determined from the rates by using the Arrhenius equation and proved to be the same at pH 5.4 and 7.4, although the decomposition rate at pH 5.4 was faster at all temperatures. At pH 3.1, the Ea was reduced. These results suggest that the dehydration reaction is affected by two discrete protonations, most probably of the N-3 and the OH group of C-6 of cytosine hydrate. The deamination of cytosine hydrate to uracil hydrate was maximal at pH 3.1 at all temperatures. The doubly protonated cytosine hydrate probably is the common intermediate for both competing decomposition reactions, explaining why cytosine hydrate is prone to deamination at acid pH.(ABSTRACT TRUNCATED AT 250 WORDS)

A robust, sensitive assay for genomic uracil determination by LC/MS/MS reveals lower levels than previously reported.

PubMed

Galashevskaya, Anastasia; Sarno, Antonio; Vågbø, Cathrine B; Aas, Per A; Hagen, Lars; Slupphaug, Geir; Krokan, Hans E

2013-09-01

Considerable progress has been made in understanding the origins of genomic uracil and its role in genome stability and host defense; however, the main question concerning the basal level of uracil in DNA remains disputed. Results from assays designed to quantify genomic uracil vary by almost three orders of magnitude. To address the issues leading to this inconsistency, we explored possible shortcomings with existing methods and developed a sensitive LC/MS/MS-based method for the absolute quantification of genomic 2'-deoxyuridine (dUrd). To this end, DNA was enzymatically hydrolyzed to 2'-deoxyribonucleosides and dUrd was purified in a preparative HPLC step and analyzed by LC/MS/MS. The standard curve was linear over four orders of magnitude with a quantification limit of 5 fmol dUrd. Control samples demonstrated high inter-experimental accuracy (94.3%) and precision (CV 9.7%). An alternative method that employed UNG2 to excise uracil from DNA for LC/MS/MS analysis gave similar results, but the intra-assay variability was significantly greater. We quantified genomic dUrd in Ung(+/+) and Ung(-/-) mouse embryonic fibroblasts and human lymphoblastoid cell lines carrying UNG mutations. DNA-dUrd is 5-fold higher in Ung(-/-) than in Ung(+/+) fibroblasts and 11-fold higher in UNG2 dysfunctional than in UNG2 functional lymphoblastoid cells. We report approximately 400-600 dUrd per human or murine genome in repair-proficient cells, which is lower than results using other methods and suggests that genomic uracil levels may have previously been overestimated. Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.

Biological UV dosimeters in simulated space irradiation conditions

NASA Astrophysics Data System (ADS)

Rontó, G.; Bérces, A.; Fekete, A.; Kovács, G.; Lammer, H.

For the measurement of the harmful biological effect of solar UV radiation bacteriophage T7 and polycrystalline uracil dosimeters were used. For terrestrial dosimetric purposes bacteriophage T7 has been applied in solution, while uracil in the form of thin layers. For space irradiation dosimetry the uracil, phage T7-DNA and bacteriophage T7 thin layer samples were prepared in vacuum tightly closed sandwich forms covered either by calciumfluoride or quartz windows. The experimental conditions tested correspond to the conditions planned in the EXPOSE facility: the samples were surrounded by nitrogen atmosphere at various humidities, their vacuum stability was tested in the vacuum chamber of the Institute of Space Research,, Graz. All kinds of the thin film samples have been stored in an atmosphere containing Nitrogen and Hidrogen, in quality control no change in the structure of them has been found. To attenuate the high extraterrestrial irradiance neutral filters of 0.5 and 1.0 optical densities have been tested. Irradiation of the samples has been performed with various UV sources: solar simulator, low pressure Mercury lamp, Deuterium lamp. Dose-effect functions have been determined using for the evaluation spectrophotometry in the characteristic UV range, HPLC of photoproducts, PCR of two different primer sequences of phage T7-DNA. Photoproduct formation kinetics was followed by the saturation level of uracil thin layer. Attenuation ability of the neutral filters was controlled with low pressure Mercury lamp by the exposure necessary for saturation of uracil dosimeters. A three and tenfold increase in the exposure was found respectively, while the influence of spectral composition of the irradiation source was tested using Deuterium lamp supplied with Ca F2 and quartz filters respectively. A doubling of the irradiance was necessary for the saturation of uracil with quartz filter.

Near Field Cosmology with the Pan-Andromeda Archaeological Survey

NASA Astrophysics Data System (ADS)

McConnachie, A. W.; PAndAS Collaboration

2012-08-01

I describe the Pan-Andromeda Archaeological Survey (PAndAS), and discuss several recent science highlights, including studies of its dwarf satellite systems, its stellar halo, and correlations with the HI content. I also discuss the need for a large scale, wide field, multi-object spectroscopic survey, such as the type made possible with the proposed Next Generation Canada-France-Hawaii Telescope (NG-CFHT).

Neutral hydrogen survey of andromeda galaxy.

PubMed

Brundage, W D; Kraus, J D

1966-07-22

A neutral hydrogen survey of the Andromeda galaxy (M31) has been conducted with the 260-foot (80m) Ohio State University radio telescope. The neutral hydrogen is concentrated in the spiral arm regions, with but relatively small amounts near the center of the galaxy. Similar deficiencies have been found near the center of M33 and our galaxy, suggesting similar evolutionary processes in the three galaxies.

ANDROMEDA DWARFS IN LIGHT OF MODIFIED NEWTONIAN DYNAMICS

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGaugh, Stacy; Milgrom, Mordehai

We compare the recently published velocity dispersions for 17 Andromeda dwarf spheroidals with estimates of the modified Newtonian dynamics predictions, based on the luminosities of these dwarfs, with reasonable stellar mass-to-light values and no dark matter. We find that the two are consistent within the uncertainties. We further predict the velocity dispersions of another 10 dwarfs for which only photometric data are currently available.

Comet Hale-Bopp in the constellation Andromeda

NASA Technical Reports Server (NTRS)

1997-01-01

Comet Hale-Bopp was photographed in the constellation Andromeda by George Shelton, photographer for The Bionetics Corp., at 8:14 p.m. on March 31, 1997, from Merritt Island, Florida, close to the Kennedy Space Center. During this 24-hour period, Comet Hale- Bopp is making its closest approach to the Sun.

Transformation by complementation of a uracil auxotroph of the hyper lignin-degrading basidiomycete Phanerochaete sordida YK-624.

PubMed

Yamagishi, Kenji; Kimura, Toshiyuki; Oita, Sigeru; Sugiura, Tatsuki; Hirai, Hirofumi

2007-10-01

Phanerochaete sordida YK-624 is a hyper lignin-degrading basidiomycete possessing greater ligninolytic selectivity than either P. chrysosporium or Trametes versicolor. To construct a gene transformation system for P. sordida YK-624, uracil auxotrophic mutants were generated using a combination of ultraviolet (UV) radiation and 5-fluoroorotate resistance as a selection scheme. An uracil auxotrophic strain (UV-64) was transformed into a uracil prototroph using the marker plasmid pPsURA5 containing the orotate phosphoribosyltransferase gene from P. sordida YK-624. This system generated approximately 50 stable transformants using 2 x 10(7) protoplasts. Southern blot analysis demonstrated that the transformed pPsURA5 was ectopically integrated into the chromosomal DNA of all transformants. The enhanced green fluorescent protein (EGFP) gene was also introduced into UV-64. The transformed EGFP was expressed in the co-transformants driven by P. sordida glyceraldehyde-3-phosphate dehydrogenase gene promoter and terminator regions.

Measurements of the $$\\Upsilon$$(1S), $$\\Upsilon$$(2S), and $$\\Upsilon$$(3S) differential cross sections in pp collisions at $$\\sqrt{s} =$$ 7 TeV

DOE PAGES

Khachatryan, Vardan

2015-07-22

Differential cross sections as a function of transverse momentum p T are presented for the production of Υ(nS) (n = 1, 2, 3) states decaying into a pair of muons. Thus, data corresponding to an integrated luminosity of 4.9 fb -1 in pp collisions at √s = 7 TeV were collected with the CMS detector at the LHC. The analysis selects events with dimuon rapidity |y| < 1.2 and dimuon transverse momentum in the range 10 < p T < 100 GeV. The measurements show a transition from an exponential to a power-law behavior at p T ≈ 20 GeVmore » for the three Υ states. Above that transition, the Υ(3S) spectrum is significantly harder than that of the Υ(1S). The ratios of the Υ(3S) and Υ(2S) differential cross sections to theγ Υ(1S) cross section show a rise as p T increases at low p T, then become flatter at higher p T.« less

On the nature of Upsilon Sagittarii

NASA Technical Reports Server (NTRS)

Schoenberner, D.; Drilling, J. S.

1983-01-01

An explanation for the nature and evolution of the extremely hydrogen deficient binary Upsilon Sagittarii which is consistent with all observational and theoretical facts. First, the system goes through a Case B mass exchange in which most of the hydrogen rich envelope of a massive primary (5 to 14 solar masses) is lost. The remaining envelope still contains about 50 percent hydrogen (by number), but is now of negligible mass, so that the star evolves like a pure helium star. If its mass is between 1 and 2 solar masses the star reaches low surface temperatures and becomes a supergiant before the onset of carbon burning. This star (the original primary) then fills its Roche lobe a second time,spilling its now helium rich envelope over onto the secondary (Case BB mass exchange). It is argued that Upsilon Sagittarii is in this state at the present time, and that the visible star is an evolved helium star of about 1 solar mass with a degenerate carbon-oxygen core and a helium burning shell which provides the high luminosity. Previously announced in Star as N26117

Combining H/D exchange mass spectroscopy and computational docking reveals extended DNA-binding surface on uracil-DNA glycosylase

PubMed Central

Roberts, Victoria A.; Pique, Michael E.; Hsu, Simon; Li, Sheng; Slupphaug, Geir; Rambo, Robert P.; Jamison, Jonathan W.; Liu, Tong; Lee, Jun H.; Tainer, John A.; Ten Eyck, Lynn F.; Woods, Virgil L.

2012-01-01

X-ray crystallography provides excellent structural data on protein–DNA interfaces, but crystallographic complexes typically contain only small fragments of large DNA molecules. We present a new approach that can use longer DNA substrates and reveal new protein–DNA interactions even in extensively studied systems. Our approach combines rigid-body computational docking with hydrogen/deuterium exchange mass spectrometry (DXMS). DXMS identifies solvent-exposed protein surfaces; docking is used to create a 3-dimensional model of the protein–DNA interaction. We investigated the enzyme uracil-DNA glycosylase (UNG), which detects and cleaves uracil from DNA. UNG was incubated with a 30 bp DNA fragment containing a single uracil, giving the complex with the abasic DNA product. Compared with free UNG, the UNG–DNA complex showed increased solvent protection at the UNG active site and at two regions outside the active site: residues 210–220 and 251–264. Computational docking also identified these two DNA-binding surfaces, but neither shows DNA contact in UNG–DNA crystallographic structures. Our results can be explained by separation of the two DNA strands on one side of the active site. These non-sequence-specific DNA-binding surfaces may aid local uracil search, contribute to binding the abasic DNA product and help present the DNA product to APE-1, the next enzyme on the DNA-repair pathway. PMID:22492624

Interplay Between Capsule Expression and Uracil Metabolism in Streptococcus pneumoniae D39

PubMed Central

Carvalho, Sandra M.; Kloosterman, Tomas G.; Manzoor, Irfan; Caldas, José; Vinga, Susana; Martinussen, Jan; Saraiva, Lígia M.; Kuipers, Oscar P.; Neves, Ana R.

2018-01-01

Pyrimidine nucleotides play an important role in the biosynthesis of activated nucleotide sugars (NDP-sugars). NDP-sugars are the precursors of structural polysaccharides in bacteria, including capsule, which is a major virulence factor of the human pathogen S. pneumoniae. In this work, we identified a spontaneous non-reversible mutant of strain D39 that displayed a non-producing capsule phenotype. Whole-genome sequencing analysis of this mutant revealed several non-synonymous single base modifications, including in genes of the de novo synthesis of pyrimidines and in the −10 box of capsule operon promoter (Pcps). By directed mutagenesis we showed that the point mutation in Pcps was solely responsible for the drastic decrease in capsule expression. We also demonstrated that D39 subjected to uracil deprivation shows increased biomass and decreased Pcps activity and capsule amounts. Importantly, Pcps expression is further decreased by mutating the first gene of the de novo synthesis of pyrimidines, carA. In contrast, the absence of uracil from the culture medium showed no effect on the spontaneous mutant strain. Co-cultivation of the wild-type and the mutant strain indicated a competitive advantage of the spontaneous mutant (non-producing capsule) in medium devoid of uracil. We propose a model in that uracil may act as a signal for the production of different capsule amounts in S. pneumoniae. PMID:29599757

Interplay Between Capsule Expression and Uracil Metabolism in Streptococcus pneumoniae D39.

PubMed

Carvalho, Sandra M; Kloosterman, Tomas G; Manzoor, Irfan; Caldas, José; Vinga, Susana; Martinussen, Jan; Saraiva, Lígia M; Kuipers, Oscar P; Neves, Ana R

2018-01-01

Pyrimidine nucleotides play an important role in the biosynthesis of activated nucleotide sugars (NDP-sugars). NDP-sugars are the precursors of structural polysaccharides in bacteria, including capsule, which is a major virulence factor of the human pathogen S. pneumoniae . In this work, we identified a spontaneous non-reversible mutant of strain D39 that displayed a non-producing capsule phenotype. Whole-genome sequencing analysis of this mutant revealed several non-synonymous single base modifications, including in genes of the de novo synthesis of pyrimidines and in the -10 box of capsule operon promoter (P cps ). By directed mutagenesis we showed that the point mutation in P cps was solely responsible for the drastic decrease in capsule expression. We also demonstrated that D39 subjected to uracil deprivation shows increased biomass and decreased P cps activity and capsule amounts. Importantly, P cps expression is further decreased by mutating the first gene of the de novo synthesis of pyrimidines, carA . In contrast, the absence of uracil from the culture medium showed no effect on the spontaneous mutant strain. Co-cultivation of the wild-type and the mutant strain indicated a competitive advantage of the spontaneous mutant (non-producing capsule) in medium devoid of uracil. We propose a model in that uracil may act as a signal for the production of different capsule amounts in S. pneumoniae .

Hematological parameters on the effect of the jellyfish venom Cassiopea andromeda in animal models.

PubMed

Nabipour, Iraj; Mohebbi, Gholamhossein; Vatanpour, Hossein; Vazirizadeh, Amir

2017-04-01

For the first time, we previously recorded an enormous population of the Cassiopea andromeda jellyfish that had increased dramatically from Bushehr coasts of Iran. The sub-acute toxicity of the jellyfish venom in rat organs was correspondingly carried out. The data presented in this paper relate to the in vivo and in vitro hematological effects of this venomous species of jellyfish venom.

Measurement of J/psi production in continuum e(+)e(-) annihilations near square root of s = 10.6 GeV.

PubMed

Aubert, B; Boutigny, D; Gaillard, J M; Hicheur, A; Karyotakis, Y; Lees, J P; Robbe, P; Tisserand, V; Palano, A; Chen, G P; Chen, J C; Qi, N D; Rong, G; Wang, P; Zhu, Y S; Eigen, G; Reinertsen, P L; Stugu, B; Abbott, B; Abrams, G S; Borgland, A W; Breon, A B; Brown, D N; Button-Shafer, J; Cahn, R N; Clark, A R; Fan, Q; Gill, M S; Gritsan, A; Groysman, Y; Jacobsen, R G; Kadel, R W; Kadyk, J; Kerth, L T; Kluth, S; Kolomensky, Y G; Kral, J F; LeClerc, C; Levi, M E; Liu, T; Lynch, G; Meyer, A B; Momayezi, M; Oddone, P J; Perazzo, A; Pripstein, M; Roe, N A; Romosan, A; Ronan, M T; Shelkov, V G; Telnov, A V; Wenzel, W A; Bright-Thomas, P G; Harrison, T J; Hawkes, C M; Kirk, A; Knowles, D J; O'Neale, S W; Penny, R C; Watson, A T; Watson, N K; Deppermann, T; Goetzen, K; Koch, H; Krug, J; Kunze, M; Lewandowski, B; Peters, K; Schmuecker, H; Steinke, M; Andress, J C; Barlow, N R; Bhimji, W; Chevalier, N; Clark, P J; Cottingham, W N; De Groot, N; Dyce, N; Foster, B; Mass, A; McFall, J D; Wallom, D; Wilson, F F; Abe, K; Hearty, C; Mattison, T S; McKenna, J A; Thiessen, D; Camanzi, B; Jolly, S; McKemey, A K; Tinslay, J; Blinov, V E; Bukin, A D; Bukin, D A; Buzykaev, A R; Dubrovin, M S; Golubev, V B; Ivanchenko, V N; Korol, A A; Kravchenko, E A; Onuchin, A P; Salnikov, A A; Serednyakov, S I; Skovpen, Y I; Telnov, V I; Yushkov, A N; Best, D; Lankford, A J; Mandelkern, M; McMahon, S; Stoker, D P; Ahsan, A; Arisaka, K; Buchanan, C; Chun, S; Branson, J G; MacFarlane, D B; Prell, S; Rahatlou, S; Raven, G; Sharma, V; Campagnari, C; Dahmes, B; Hart, P A; Kuznetsova, N; Levy, S L; Long, O; Lu, A; Richman, J D; Verkerke, W; Witherell, M; Yellin, S; Beringer, J; Dorfan, D E; Eisner, A M; Frey, A; Grillo, A A; Grothe, M; Heusch, C A; Johnson, R P; Kroeger, W; Lockman, W S; Pulliam, T; Sadrozinski, H; Schalk, T; Schmitz, R E; Schumm, B A; Seiden, A; Turri, M; Walkowiak, W; Williams, D C; Wilson, M G; Chen, E; Dubois-Felsmann, G P; Dvoretskii, A; Hitlin, D G; Metzler, S; Oyang, J; Porter, F C; Ryd, A; Samuel, A; Weaver, M; Yang, S; Zhu, R Y; Devmal, S; Geld, T L; Jayatilleke, S; Mancinelli, G; Meadows, B T; Sokoloff, M D; Bloom, P; Dima, M O; Fahey, S; Ford, W T; Gaede, F; Johnson, D R; Michael, A K; Nauenberg, U; Olivas, A; Park, H; Rankin, P; Roy, J; Sen, S; Smith, J G; van Hoek, W C; Wagner, D L; Blouw, J; Harton, J L; Krishnamurthy, M; Soffer, A; Toki, W H; Wilson, R J; Zhang, J; Brandt, T; Brose, J; Colberg, T; Dahlinger, G; Dickopp, M; Dubitzky, R S; Maly, E; Müller-Pfefferkorn, R; Otto, S; Schubert, K R; Schwierz, R; Spaan, B; Wilden, L; Behr, L; Bernard, D; Bonneaud, G R; Brochard, F; Cohen-Tanugi, J; Ferrag, S; Roussot, E; T'Jampens, S; Thiebaux, C; Vasileiadis, G; Verderi, M; Anjomshoaa, A; Bernet, R; Khan, A; Muheim, F; Playfer, S; Swain, J E; Falbo, M; Borean, C; Bozzi, C; Dittongo, S; Folegani, M; Piemontese, L; Treadwell, E; Anulli, F; Baldini-Ferroli, R; Calcaterra, A; de Sangro, R; Falciai, D; Finocchiaro, G; Patteri, P; Peruzzi, I M; Piccolo, M; Xie, Y; Zallo, A; Bagnasco, S; Buzzo, A; Contri, R; Crosetti, G; Fabbricatore, P; Farinon, S; Lo Vetere, M; Macri, M; Monge, M R; Musenich, R; Pallavicini, M; Parodi, R; Passaggio, S; Pastore, F C; Patrignani, C; Pia, M G; Priano, C; Robutti, E; Santroni, A; Morii, M; Bartoldus, R; Dignan, T; Hamilton, R; Mallik, U; Cochran, J; Crawley, H B; Fischer, P A; Lamsa, J; Meyer, W T; Rosenberg, E I; Benkebil, M; Grosdidier, G; Hast, C; Höcker, A; Lacker, H M; Lepeltier, V; Lutz, A M; Plaszczynski, S; Schune, M H; Trincaz-Duvoid, S; Valassi, A; Wormser, G; Bionta, R M; Brigljević, V; Fackler, O; Fujino, D; Lange, D J; Mugge, M; Shi, X; van Bibber, K; Wenaus, T J; Wright, D M; Wuest, C R; Carroll, M; Fry, J R; Gabathuler, E; Gamet, R; George, M; Kay, M; Payne, D J; Sloane, R J; Touramanis, C; Aspinwall, M L; Bowerman, D A; Dauncey, P D; Egede, U; Eschrich, I; Gunawardane, N J; Martin, R; Nash, J A; Sanders, P; Smith, D; Azzopardi, D E; Back, J J; Dixon, P; Harrison, P F; Potter, R J; Shorthouse, H W; Strother, P; Vidal, P B; Williams, M I; Cowan, G; George, S; Green, M G; Kurup, A; Marker, C E; McGrath, P; McMahon, T R; Ricciardi, S; Salvatore, F; Scott, I; Vaitsas, G; Brown, D; Davis, C L; Allison, J; Barlow, R J; Boyd, J T; Forti, A C; Fullwood, J; Jackson, F; Lafferty, G D; Savvas, N; Simopoulos, E T; Weatherall, J H; Farbin, A; Jawahery, A; Lillard, V; Olsen, J; Roberts, D A; Schieck, J R; Blaylock, G; Dallapiccola, C; Flood, K T; Hertzbach, S S; Kofler, R; Lin, C S; Moore, T B; Staengle, H; Willocq, S; Wittlin, J; Brau, B; Cowan, R; Sciolla, G; Taylor, F; Yamamoto, R K; Britton, D I; Milek, M; Patel, P M; Trischuk, J; Lanni, F; Palombo, F; Bauer, J M; Booke, M; Cremaldi, L; Eschenburg, V; Kroeger, R; Reidy, J; Sanders, D A; Summers, D J; Martin, J P; Nief, J Y; Seitz, R; Taras, P; Zacek, V; Nicholson, H; Sutton, C S; Cartaro, C; Cavallo, N; De Nardo, G; Fabozzi, F; Gatto, C; Lista, L; Paolucci, P; Piccolo, D; Sciacca, C; LoSecco, J M; Alsmiller, J R; Gabriel, T A; Handler, T; Brau, J; Frey, R; Iwasaki, M; Sinev, N B; Strom, D; Colecchia, F; Dal Corso, F; Dorigo, A; Galeazzi, F; Margoni, M; Michelon, G; Morandin, M; Posocco, M; Rotondo, M; Simonetto, F; Stroili, R; Torassa, E; Voci, C; Benayoun, M; Briand, H; Chauveau, J; David, P; de la Vaissière, C; Del Buono, L; Hamon, O; Le Diberder, F; Leruste, P; Lory, J; Roos, L; Stark, J; Versillé, S; Manfredi, P F; Re, V; Speziali, V; Frank, E D; Gladney, L; Guo, Q H; Panetta, J H; Angelini, C; Batignani, G; Bettarini, S; Bondioli, M; Carpinelli, M; Forti, F; Giorgi, M A; Lusiani, A; Martinez-Vidal, F; Morganti, M; Neri, N; Paoloni, E; Rama, M; Rizzo, G; Sandrelli, F; Simi, G; Triggiani, G; Walsh, J; Haire, M; Judd, D; Paick, K; Turnbull, L; Wagoner, D E; Albert, J; Bula, C; Elmer, P; Lu, C; McDonald, K T; Miftakov, V; Schaffner, S F; Smith, A J; Tumanov, A; Varnes, E W; Cavoto, G; del Re, D; Faccini, R; Ferrarotto, F; Ferroni, F; Fratini, K; Lamanna, E; Leonardi, E; Mazzoni, M A; Morganti, S; Piredda, G; Safai Tehrani, F; Serra, M; Voena, C; Christ, S; Waldi, R; Adye, T; Franek, B; Geddes, N I; Gopal, G P; Xella, S M; Aleksan, R; De Domenico, G; Emery, S; Gaidot, A; Ganzhur, S F; Giraud, P F; Hamel de Monchenault, G; Kozanecki, W; Langer, M; London, G W; Mayer, B; Serfass, B; Vasseur, G; Yèche, C; Zito, M; Copty, N; Purohit, M V; Singh, H; Yumiceva, F X; Adam, I; Anthony, P L; Aston, D; Baird, K; Bloom, E; Boyarski, A M; Bulos, F; Calderini, G; Claus, R; Convery, M R; Coupal, D P; Coward, D H; Dorfan, J; Doser, M; Dunwoodie, W; Field, R C; Glanzman, T; Godfrey, G L; Gowdy, S J; Grosso, P; Himel, T; Huffer, M E; Innes, W R; Jessop, C P; Kelsey, M H; Kim, P; Kocian, M L; Langenegger, U; Leith, D W; Luitz, S; Luth, V; Lynch, H L; Manzin, G; Marsiske, H; Menke, S; Messner, R; Moffeit, K C; Mount, R; Muller, D R; O'Grady, C P; Perl, M; Petrak, S; Quinn, H; Ratcliff, B N; Robertson, S H; Rochester, L S; Roodman, A; Schietinger, T; Schindler, R H; Schwiening, J; Serbo, V V; Snyder, A; Soha, A; Spanier, S M; Stahl, A; Stelzer, J; Su, D; Sullivan, M K; Talby, M; Tanaka, H A; Trunov, A; Va'vra, J; Wagner, S R; Weinstein, A J; Wisniewski, W J; Wright, D H; Young, C C; Burchat, P R; Cheng, C H; Kirkby, D; Meyer, T I; Roat, C; Henderson, R; Bugg, W; Cohn, H; Hart, E; Weidemann, A W; Benninger, T; Izen, J M; Kitayama, I; Lou, X C; Turcotte, M; Bianchi, F; Bona, M; Di Girolamo, B; Gamba, D; Smol, A; Zanin, D; Lanceri, L; Pompili, A; Vaugin, G; Panvini, R S; Brown, C M; De Silva, A; Kowalewski, R; Roney, J M; Band, H R; Charles, E; Dasu, S; Di Lodovico, F; Eichenbaum, A M; Hu, H; Johnson, J R; Liu, R; Nielsen, J; Orejudos, W; Pan, Y; Prepost, R; Scott, I J; Sekula, S J; von Wimmersperg-Toeller, J H; Wu, S L; Yu, Z; Zobernig, H; Kordich, T M; Neal, H

2001-10-15

The production of J/psi mesons in continuum e(+)e(-) annihilations has been studied with the BABAR detector at energies near the Upsilon(4S) resonance. The mesons are distinguished from J/psi production in B decays through their center-of-mass momentum and energy. We measure the cross section e(+)e(-)-->J/psi X to be 2.52+/-0.21+/-0.21 pb. We set a 90% C.L. upper limit on the branching fraction for direct Upsilon(4S)-->J/psi X decays at 4.7 x 10(-4).

Orbital Dynamics and Habitability of Exoplanets

NASA Astrophysics Data System (ADS)

Deitrick, Russell J.

With the discoveries of thousands of extra-solar planets, a handful of which are terrestrial in size and located within the "habitable zone" of their host stars, the discovery of another instance of life in the universe seems increasingly within our grasp. Yet, a number of difficulties remain--with current and developing technologies, the full characterization of a terrestrial atmosphere and, hence, the detection of biosignatures will be extraordinarily difficult and expensive. Furthermore, observations will be ambiguous, as recent developments have shown that there is no "smoking gun" for the presence of life. Ultimately, the interpretation of observations will depend heavily upon our understanding of life's fundamental properties and the physical context of a planet's observed properties. This thesis is devoted to a development of the latter quantity, physical context, focusing on a topic oft-neglected in theoretical works of habitability: orbital dynamics. I show a number of ways in which orbital dynamics can affect the habitability of exoplanets. This work highlights the crucial role of stability, mutual inclinations, and resonances, demonstrating how these properties influence atmospheric states. Studies of exoplanetary systems tend to assume that the planets are coplanar, however, the large mutual inclination of the planets orbiting upsilon Andromedae suggests that coplanarity is not always a valid assumption. In my study of this system, I show that the large inclination between planets c and d and their large eccentricities lead to dramatic orbital variations. Though there is almost certainly no habitable planet orbiting upsilon And, the existence of this system demonstrates that we should expect other such dynamically "hot" planetary systems, some of which may contain potentially habitable planets. Minute variations in a planet's orbit can lead to changes in the global temperature, and indeed, these variations seem to be intimately connected to Earth's Pleistocene ice ages. Mutual inclinations lead not only to larger variations in a planet's obliquity, but also uncover secular spin-orbit resonances, which lead to yet more dramatic behavior. I modeled the obliquity evolution of planets in this highly non-linear dynamical regime. Connecting the dynamical models to an simple climate model with ice sheets, I modeled the effects of such dynamical evolution on an Earth-like planet's climate. As expected, such "exo-Milankovitch cycles" can be rapid and dramatic, often leading to complete collapse into a snowball state. By demonstrating a handful of the many ways dynamics can influence habitability, this research provides context to observations of exoplanets and connects to one of the key goals of astrobiology, to "Determine the potential for habitable planets beyond the Solar System, and characterize those that are observable" (Des Marais et al., 2008). It provides tools and techniques that may be used to help prioritize exoplanet targets for characterization missions when very little information is known other than orbital properties. It also demonstrates how orbital evolution affects observable quantities like albedo, and will assist in the interpretation of spectra.

CCD photometry of Andromeda IV - Dwarf irregular galaxy or M31 open cluster?

NASA Technical Reports Server (NTRS)

Jones, Joseph H.

1993-01-01

CCD photometry of Andromeda IV was obtained during discretionary time in August of 1989 at the Canada-France-Hawaii Telescope on Mauna Kea and the data were reduced at CFHT during the summer of 1991. And IV has been catalogued both as a dwarf galaxy and as an open star cluster in M31. The color-magnitude diagrams presented indicate that this object has a young population of stars with a narrow age range, consistent with the characteristics of an open star cluster or stellar association. A radial velocity measurement taken from the literature and analyzed with respect to the rotation curve of M31 indicates this object resides in the disk of the Andromeda Galaxy, strengthening the conclusion that it is indeed a very large open star cluster or a densely populated stellar association rather than a dwarf irregular galaxy.

Image of the Great Nebula in Andromeda, M31 Taken by the High Energy Astronomy Observatory (HEAO)-2

NASA Technical Reports Server (NTRS)

1978-01-01

Both of the High Energy Astronomy Observatory (HEAO)-2/Einstein Observatory imaging devices were used to observe the Great Nebula in Andromeda, M31. This is a smaller field and more detailed view of the central region of the Great Nebula in Andromeda, M31, taken with the High Resolution Imager. The HEAO-2, the first imaging and largest x-ray telescope built to date, was capable of producing actual photographs of x-ray objects. Shortly after launch, the HEAO-2 was nicknamed the Einstein Observatory by its scientific experimenters in honor of the centernial of the birth of Albert Einstein, whose concepts of relativity and gravitation have influenced much of modern astrophysics, particularly x-ray astronomy. The HEAO-2, designed and developed by TRW, Inc. under the project management of the Marshall Space Flight Center, was launched aboard an Atlas/Centaur launch vehicle on November 13, 1978.

An uracil-linked hydroxyflavone probe for the recognition of ATP

PubMed Central

Bojtár, Márton; Janzsó-Berend, Péter Zoltán; Mester, Dávid; Hessz, Dóra; Kállay, Mihály; Kubinyi, Miklós

2018-01-01

Background: Nucleotides are essential molecules in living systems due to their paramount importance in various physiological processes. In the past years, numerous attempts were made to selectively recognize and detect these analytes, especially ATP using small-molecule fluorescent chemosensors. Despite the various solutions, the selective detection of ATP is still challenging due to the structural similarity of various nucleotides. In this paper, we report the conjugation of a uracil nucleobase to the known 4’-dimethylamino-hydroxyflavone fluorophore. Results: The complexation of this scaffold with ATP is already known. The complex is held together by stacking and electrostatic interactions. To achieve multi-point recognition, we designed the uracil-appended version of this probe to include complementary base-pairing interactions. The theoretical calculations revealed the availability of multiple complex structures. The synthesis was performed using click chemistry and the nucleotide recognition properties of the probe were evaluated using fluorescence spectroscopy. Conclusions: The first, uracil-containing fluorescent ATP probe based on a hydroxyflavone fluorophore was synthesized and evaluated. A selective complexation with ATP was observed and a ratiometric response in the excitation spectrum. PMID:29719572

Suppression of Υ production in d + Au + and Au + Au collisions at √ sNN =200 GeV

DOE PAGES

None

2014-07-01

We report measurements of Upsilon meson production in p + p, d +Au, and Au+Au collisions using the STAR detector at RHIC. We compare the Upsilon yield to the measured cross section in p + p collisions in order to quantify any modifications of the yield in cold nuclear matter using d +Au data and in hot nuclear matter using Au+Au data separated into three centrality classes. Our p +p measurement is based on three times the statistics of our previous result. We obtain a nuclear modification factor for Upsilon (1S + 2S + 3S) in the rapidity range |y|more » < 1 in d + Au collisions of R dAu = 0.79 ± 0.24(stat.) ± 0.03(syst.) ± 0.10(p + p syst.). A comparison with models including shadowing and initial state part on energy loss indicates the presence of additional cold-nuclear matter suppression. Similarly, in the top 10% most-central Au + Au collisions, we measure a nuclear modification factor of R AA = 0.49 ±0.1(stat.) ±0.02(syst.) ±0.06(p + p syst.), which is a larger suppression factor than that seen in cold nuclear matter. Our results are consistent with complete suppression of excited-state Upsilon mesons in Au + Au collisions. The additional suppression in Au + Au is consistent with the level expected in model calculations that include the presence of a hot, deconfined Quark–Gluon Plasma. However, understanding the suppression seen in d + Au is still needed before any definitive statements about the nature of the suppression in Au + Au can be made.« less

[In situ diffuse reflectance FTIR spectroscopy study of CO adsorption on Ni2P/mesoporous molecule sieve catalysts].

PubMed

Liu, Qian-qian; Ji, Sheng-fu; Wu, Ping-yi; Hu, Lin-hua; Huang, Xiao-fan; Zhu, Ji-qin; Li, Cheng-yue

2009-05-01

Abstract The supported nickel phosphate precursors were prepared by incipient wetness impregnation using nickel nitrate as nickel source, diammonium hydrogen phosphate as phosphorus source, and MCM-41, MCM-48, SBA-15 and SBA-16 as supports, respectively. Then, the supported Ni2 P catalysts were prepared by temperature-programmed reduction in flowing Hz from their nickel phosphate precursors. The in situ diffuse reflectance FTIR spectroscopy (DRIFTS) analysis with the probe molecule CO was carried out to characterize the surface properties. The results indicated that there were significant differences in the spectral features of the samples. The upsilon(CO) absorbances observed for adsorbed CO on mesoporous molecule sieve was attributed to weak physical adsorption. There are four different kinds of upsilon(CO) absorbances observed for adsorbed CO on Ni2 P/MCM-41 catalyst with the following assignments: (1) the formation of Ni(CO)4 at 2055 cm(-1). (2) CO terminally bonded to cus Ni(delta+) (0

An unconventional family 1 uracil DNA glycosylase in Nitratifractor salsuginis.

PubMed

Li, Jing; Chen, Ran; Yang, Ye; Zhang, Zhemin; Fang, Guang-Chen; Xie, Wei; Cao, Weiguo

2017-12-01

The uracil DNA glycosylase superfamily consists of at least six families with a diverse specificity toward DNA base damage. Family 1 uracil N-glycosylase (UNG) exhibits exclusive specificity on uracil-containing DNA. Here, we report a family 1 UNG homolog from Nitratifractor salsuginis with distinct biochemical features that differentiate it from conventional family 1 UNGs. Globally, the crystal structure of N. salsuginisUNG shows a few additional secondary structural elements. Biochemical and enzyme kinetic analysis, coupled with structural determination, molecular modeling, and molecular dynamics simulations, shows that N. salsuginisUNG contains a salt bridge network that plays an important role in DNA backbone interactions. Disruption of the amino acid residues involved in the salt bridges greatly impedes the enzymatic activity. A tyrosine residue in motif 1 (GQDPY) is one of the distinct sequence features setting family 1 UNG apart from other families. The crystal structure of Y81G mutant indicates that several subtle changes may account for its inactivity. Unlike the conventional family 1 UNG enzymes, N. salsuginisUNG is not inhibited by Ugi, a potent inhibitor specific for family 1 UNG. This study underscores the diversity of paths that a uracil DNA glycosylase may take to acquire its unique structural and biochemical properties during evolution. Structure data are available in the PDB under accession numbers 5X3G and 5X3H. © 2017 Federation of European Biochemical Societies.

The UNG2 Arg88Cys variant abrogates RPA-mediated recruitment of UNG2 to single-stranded DNA.

PubMed

Torseth, Kathrin; Doseth, Berit; Hagen, Lars; Olaisen, Camilla; Liabakk, Nina-Beate; Græsmann, Heidi; Durandy, Anne; Otterlei, Marit; Krokan, Hans E; Kavli, Bodil; Slupphaug, Geir

2012-06-01

In human cell nuclei, UNG2 is the major uracil-DNA glycosylase initiating DNA base excision repair of uracil. In activated B cells it has an additional role in facilitating mutagenic processing of AID-induced uracil at Ig loci and UNG-deficient patients develop hyper-IgM syndrome characterized by impaired class-switch recombination and disturbed somatic hypermutation. How UNG2 is recruited to either error-free or mutagenic uracil processing remains obscure, but likely involves regulated interactions with other proteins. The UNG2 N-terminal domain contains binding motifs for both proliferating cell nuclear antigen (PCNA) and replication protein A (RPA), but the relative contribution of these interactions to genomic uracil processing is not understood. Interestingly, a heterozygous germline single-nucleotide variant leading to Arg88Cys (R88C) substitution in the RPA-interaction motif of UNG2 has been observed in humans, but with unknown functional relevance. Here we demonstrate that UNG2-R88C protein is expressed from the variant allele in a lymphoblastoid cell line derived from a heterozygous germ line carrier. Enzyme activity as well as localization in replication foci of UNG2-R88C was similar to that of WT. However, binding to RPA was essentially abolished by the R88C substitution, whereas binding to PCNA was unaffected. Moreover, we show that disruption of the PCNA-binding motif impaired recruitment of UNG2 to S-phase replication foci, demonstrating that PCNA is a major factor for recruitment of UNG2 to unperturbed replication forks. Conversely, in cells treated with hydroxyurea, RPA mediated recruitment of UNG2 to stalled replication forks independently of functional PCNA binding. Modulation of PCNA- versus RPA-binding may thus constitute a functional switch for UNG2 in cells subsequent to genotoxic stress and potentially also during the processing of uracil at the immunoglobulin locus in antigen-stimulated B cells. Copyright © 2012 Elsevier B.V. All rights reserved.

Fade to Red

NASA Technical Reports Server (NTRS)

2006-01-01

[figure removed for brevity, see original site] Infrared Andromeda Galaxy (M31) Poster [figure removed for brevity, see original site] [figure removed for brevity, see original site] Stars Dust

This animation shows the Andromeda galaxy, first as seen in visible light by the National Optical Astronomy Observatory, then as seen in infrared by NASA's Spitzer Space Telescope.

The visible-light image highlights the galaxy's population of about one trillion stars. The stars are so crammed into its core that this region blazes with bright starlight.

In contrast, the false-colored Spitzer view reveals red waves of dust against a more tranquil sea of blue stars. The dust lanes can be seen twirling all the way into the galaxy's center. This dust is warmed by young stars and shines at infrared wavelengths , which are represented in red. The blue color signifies shorter-wavelength infrared light primarily from older stars.

The Andromeda galaxy, also known affectionately by astronomers as Messier 31, is located 2.5 million light-years away in the constellation Andromeda. It is the closest major galaxy to the Milky Way, making it the ideal specimen for carefully examining the nature of galaxies. On a clear, dark night, the galaxy can be spotted with the naked eye as a fuzzy blob.

Andromeda's entire disk spans about 260,000 light-years, which means that a light beam would take 260,000 years to travel from one end of the galaxy to the other. By comparison, the Milky Way is about 100,000 light-years across. When viewed from Earth, Andromeda occupies a portion of the sky equivalent to seven full moons.

Because this galaxy is so large, the infrared images had to be stitched together out of about 3,000 separate Spitzer exposures. The light detected by Spitzer's infrared array camera at 3.6 and 4.5 microns is sensitive mostly to starlight and is shown in blue and green, respectively. The 8-micron light shows warm dust and is shown in red. The contribution from starlight has been subtracted from the 8-micron image to better highlight the dust structures.

Note: The size of the Full-Res TIFF for the still image is 14772 samples x 4953 lines.

Spectroscopic and Photometric Properties of Carbon Stars in the Disk of the Andromeda Galaxy

NASA Astrophysics Data System (ADS)

Guhathakurta, Puragra; Toloba, E.; Guha, S.; Rushing, C.; Dorman, C.; PHAT Collaboration; SPLASH Collaboration

2013-01-01

We explore the spectroscopic properties of a couple hundred carbon stars discovered in the disk of the Andromeda galaxy (M31) in the course of the Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo (SPLASH) survey. The spectra were obtained using the DEIMOS spectrograph on the Keck II 10-meter telescope. About 5000 stars were targeted for spectroscopy during observing runs in 2010 and 2011 using DEIMOS's 1200 lines/mm grating with a spectral resolving power of R ~ 5000 to 6000 and spectral coverage from 6500-9000 Angstrom. In September 2012, another 5000 stars were observed this time with the 600 lines/mm grating and R ~ 2500 and spectral coverage from 4500-9000 Angstrom. For both types of spectroscopic observations, targets were selected from the Panchromatic Hubble Andromeda Treasury (PHAT) multi-cycle treasury program with the Hubble Space Telescope. Six-filter photometry in the ultraviolet (F275W, F336W), optical (F439W, F814W), and near infrared (F110W, F160W) is available for most targets. These carbon star samples are used to constrain the intermediage-age population in M31's disk. They are also compared to spectra of previously known carbon samples in the dwarf elliptical satellites of M31, NGC 147, NGC 185, and NGC 205. The authors thank the National Science Foundation, NASA/STScI, and UCSC's Summer Internship Program for support.

Visual and light scattering spectrometric method for the detection of melamine using uracil 5‧-triphosphate sodium modified gold nanoparticles

NASA Astrophysics Data System (ADS)

Liang, Lijiao; Zhen, Shujun; Huang, Chengzhi

2017-02-01

A highly selective method was presented for colorimetric determination of melamine using uracil 5‧-triphosphate sodium modified gold nanoparticles (UTP-Au NPs) in this paper. Specific hydrogen-bonding interaction between uracil base (U) and melamine resulted in the aggregation of AuNPs, displaying variations of localized surface plasmon resonance (LSPR) features such as color change from red to blue and enhanced localized surface plasmon resonance light scattering (LSPR-LS) signals. Accordingly, the concentration of melamine could be quantified based on naked eye or a spectrometric method. This method was simple, inexpensive, environmental friendly and highly selective, which has been successfully used for the detection of melamine in pretreated liquid milk products with high recoveries.

Biological samples on the ISS-EXPOSE facility for the ROSE/PUR experiment

NASA Astrophysics Data System (ADS)

Rontó, Gy.; Bérces, A.; Fekete, A.; Kerékgyártó, T.; Lammer, H.; Kargl, G.; Kömle, N. I.

2002-11-01

Three types of samples, bacteriophage T7, isolated phage DNA, polycrystalline uracil thin films were prepared in sandwich form that were closed vacuum-tightly with inert gaseous environment. The response of the samples to the following selected space environmental conditions was investigated: temperature (-20 - +40°C), vacuum, short wavelength UV irradiation. Uracil thin layer samples proved to be insensitive for temperature. In the vacuum chamber the structure of the samples in sandwich arrangement did not change. Irradiation with germicidal and Deuterium lamps caused a decrease in the optical density of the uracil layers and the decrease showed a saturation tendency in both cases. The dose-effect curves at germicidal lamp possess a saturation level at a lower optical density than at Deuterium.

Search for very light CP-odd Higgs Boson in radiative decays of Upsilon(1S).

PubMed

Love, W; Savinov, V; Mendez, H; Ge, J Y; Miller, D H; Shipsey, I P J; Xin, B; Adams, G S; Anderson, M; Cummings, J P; Danko, I; Hu, D; Moziak, B; Napolitano, J; He, Q; Insler, J; Muramatsu, H; Park, C S; Thorndike, E H; Yang, F; Artuso, M; Blusk, S; Khalil, S; Li, J; Mountain, R; Nisar, S; Randrianarivony, K; Sultana, N; Skwarnicki, T; Stone, S; Wang, J C; Zhang, L M; Bonvicini, G; Cinabro, D; Dubrovin, M; Lincoln, A; Naik, P; Rademacker, J; Asner, D M; Edwards, K W; Reed, J; Briere, R A; Ferguson, T; Tatishvili, G; Vogel, H; Watkins, M E; Rosner, J L; Alexander, J P; Cassel, D G; Duboscq, J E; Ehrlich, R; Fields, L; Galik, R S; Gibbons, L; Gray, R; Gray, S W; Hartill, D L; Heltsley, B K; Hertz, D; Hunt, J M; Kandaswamy, J; Kreinick, D L; Kuznetsov, V E; Ledoux, J; Mahlke-Krüger, H; Mohapatra, D; Onyisi, P U E; Patterson, J R; Peterson, D; Riley, D; Ryd, A; Sadoff, A J; Shi, X; Stroiney, S; Sun, W M; Wilksen, T; Athar, S B; Patel, R; Yelton, J; Rubin, P; Eisenstein, B I; Karliner, I; Mehrabyan, S; Lowrey, N; Selen, M; White, E J; Wiss, J; Mitchell, R E; Shepherd, M R; Besson, D; Pedlar, T K; Cronin-Hennessy, D; Gao, K Y; Hietala, J; Kubota, Y; Klein, T; Lang, B W; Poling, R; Scott, A W; Zweber, P; Dobbs, S; Metreveli, Z; Seth, K K; Tomaradze, A; Libby, J; Martin, L; Powell, A; Wilkinson, G; Ecklund, K M

2008-10-10

We search for a non-SM-like CP-odd Higgs boson (a(1)(0)) decaying to tau(+)tau(-) or mu(+)mu(-) in radiative decays of the Upsilon(1S). No significant signal is found, and upper limits on the product branching ratios are set. Our tau(+)tau(-) results are almost 2 orders of magnitude more stringent than previous upper limits. Our data provide no evidence for a Higgs state with a mass of 214 MeV decaying to mu(+)mu(-), previously proposed as an explanation for 3 Sigma(+)-->pmu(+)mu(-) events observed by the HyperCP experiment. Our results constrain NMSSM models.

Velocity distributions of granular gases with drag and with long-range interactions.

PubMed

Kohlstedt, K; Snezhko, A; Sapozhnikov, M V; Aranson, I S; Olafsen, J S; Ben-Naim, E

2005-08-05

We study velocity statistics of electrostatically driven granular gases. For two different experiments, (i) nonmagnetic particles in a viscous fluid and (ii) magnetic particles in air, the velocity distribution is non-Maxwellian, and its high-energy tail is exponential, P(upsilon) approximately exp(-/upsilon/). This behavior is consistent with the kinetic theory of driven dissipative particles. For particles immersed in a fluid, viscous damping is responsible for the exponential tail, while for magnetic particles, long-range interactions cause the exponential tail. We conclude that velocity statistics of dissipative gases are sensitive to the fluid environment and to the form of the particle interaction.

The Correlated Variations of {\\rm{C}}\\,{\\rm{IV}} Narrow Absorption Lines and Quasar Continuum

NASA Astrophysics Data System (ADS)

Chen, Zhi-Fu; Pang, Ting-Ting; He, Bing; Huang, Yong

2018-06-01

We assemble 207 variable quasars from the Sloan Digital Sky Survey, all with at least 3 observations, to analyze C IV narrow absorption doublets, and obtain 328 C IV narrow absorption line systems. We find that 19 out of 328 C IV narrow absorption line systems were changed by | {{Δ }}{W}rλ 1548| ≥slant 3{σ }{{Δ }{W}rλ 1548} on timescales from 15.9 to 1477 days at rest-frame. Among the 19 obviously variable C IV systems, we find that (1) 14 systems have relative velocities {\\upsilon }r> 0.01c and 4 systems have {\\upsilon }r> 0.1c, where c is the speed of light; (2) 13 systems are accompanied by other variable C IV systems; (3) 9 systems were changed continuously during multiple observations; and (4) 1 system with {\\upsilon }r = 16,862 km s‑1 was enhanced by {{Δ }}{W}rλ 1548=2.7{σ }{{Δ }{W}rλ 1548} in 0.67 day at rest-frame. The variations of absorption lines are inversely correlated with the changes in the ionizing continuum. We also find that large variations of C IV narrow absorption lines are form differently over a short timescale.

The architecture of the multi-planet system of υ And: υ And b - a super-inflated hot Jupiter in a cosmic ping-pong game

NASA Astrophysics Data System (ADS)

Rodler, Florian

2015-12-01

The gas giant Upsilon Andromeda b (υ And b) was one of the first discovered exoplanets. This planet orbits around a bright, similar to the Sun star only 13.5 parsecs away from us. υ And b is also the innermost planet of a confirmed three-planet system, all of them non-transiting. As with all non-transiting planets, their exact masses and sizes are unknown, with their orbital inclination being the key parameter to unveil those values. Astrometric measurements have placed constraints to the orbital inclinations of the two outer planets in this system, indicating that we look almost 'face-on' on the system (McArthur et al. 2010). However, the orbital inclination for the innermost planet remained unknown.Photometric monitoring of υ And b orbit at infrared wavelengths has revealed significant brightness changes between the day-side and the night-side of the planet (Crossfield et al. 2010). The amplitude of those brightness variations depends on the orbital inclination of the planet and on its radius, therefore we can tightly constrain the size of the planet if its inclination is known.Here we present the measurement of the orbital inclination for the innermost planet υ And b, 23 deg, obtained by monitoring the Doppler shift of carbon monoxide (CO) lines on the atmospheric day-side of the planet with Keck/NIRSPEC. From this measurement we establish a planet mass of 1.7 times the mass of Jupiter and a minimum planet radius of 1.8 times the size of Jupiter. This result reveals that υ And b is likely to be one of the most inflated giant planets discovered to date. In addition, the observed strong CO absorption suggests an atmosphere with temperature uniformly decreasing towards higher altitudes, which suggests the absence of an atmospheric thermal inversion (Rodler et al. 2015).

Polarization Reversal Over Flooded Regions and Applications to Large-Scale Flood Mapping with Spaceborne Scatterometers

NASA Technical Reports Server (NTRS)

Nghiem, Son V.; Liu, W. Timothy; Xie, Xiao-Su

1999-01-01

We present the polarization reversal in backscatter over flooded land regions, and demonstrate for the first time the utility of spaceborne Ku-band scatterometer for large-scale flood mapping. Scatterometer data were collected over the globe by the NASA Scatterometer (NSCAT) operated at 14 GHz on the Japanese ADEOS spacecraft from September 1996 to June 1997. During this time span, several severe floods occurred. Over most land surface, vertical polarization backscatter (Sigma(sub upsilon(upsilon)) is larger than horizontal polarization backscatter (sigma(sub hh)). Such polarization characteristics is reversed and sigma(sub upsilon(upsilon)) is smaller than sigma(sub hh) over flooded regions, except under a dense forest canopy. The total backscatter from the flooded landscape consists of direct backscatter and boundary-interaction backscatter. The direct term is contributed by direct backscattering from objects protruding above the water surface, and by backscattering from waves on the water surface. The boundary-interaction term is contributed by the forward scattering from the protruding objects and then reflected from the water surface, and also by the forward scattering from these objects after the water-surface reflection. Over flooded regions, the boundary-interaction term is dominant at large incidence angles and the strong water-surface reflection is much larger for horizontal polarization than the vertical one due to the Brewster effect in transverse-magnetic waves. These scattering mechanisms cause the polarization reversal over flooded regions. An example obtained with the Analytic Wave Theory is used to illustrate the scattering mechanisms leading to the polarization reversal. We then demonstrate the utility of spaceborne Ku-band scatterometer for large-scale flood mapping. We process NSCAT data to obtain the polarization ratio sigma(sub hh)/sigma(sub upsilon(upsilon)) with colocated data at incidence angles larger than 40 deg. The results over Asian summer monsoon regions in September-October 1996 indicate flooded areas in many countries such as Bangladesh, India, Lao, Vietnam, Cambodia, and China. Reports documented by the United Nation Department of Humanitarian Affairs (now called UN Office for the Coordination of Humanitarian Affairs) show loss of many lives and severe flood related damages which affected many million people in the corresponding flooded areas. We also map the NSCAT polarization ratio over the same regions in the "dry season" in January 1997 as a reference to confirm our results. Furthermore, we obtain concurrent ocean wind fields also derived from NSCAT data, and Asia topographic data (USGS GTOPO30) to investigate the flooded area. The results show that winds during summer monsoon season blowing inland, which perplex flood problems. Overlaying the topographic map over NSCAT results reveals an excellent correspondence between the confinement of flooded area within the relevant topographic features, which very well illustrates the value of topographic wetness index. Finally, we discuss the applications of future spaceborne scatterometers, including QuikSCAT and Seawinds, for flood mapping over the globe.

A unique dual recognition hairpin probe mediated fluorescence amplification method for sensitive detection of uracil-DNA glycosylase and endonuclease IV activities.

PubMed

Wu, Yushu; Yan, Ping; Xu, Xiaowen; Jiang, Wei

2016-03-07

Uracil-DNA glycosylase (UDG) and endonuclease IV (Endo IV) play cooperative roles in uracil base-excision repair (UBER) and inactivity of either will interrupt the UBER to cause disease. Detection of UDG and Endo IV activities is crucial to evaluate the UBER process in fundamental research and diagnostic application. Here, a unique dual recognition hairpin probe mediated fluorescence amplification method was developed for sensitively and selectively detecting UDG and Endo IV activities. For detecting UDG activity, the uracil base in the probe was excised by the target enzyme to generate an apurinic/apyrimidinic (AP) site, achieving the UDG recognition. Then, the AP site was cleaved by a tool enzyme Endo IV, releasing a primer to trigger rolling circle amplification (RCA) reaction. Finally, the RCA reaction produced numerous repeated G-quadruplex sequences, which interacted with N-methyl-mesoporphyrin IX to generate an enhanced fluorescence signal. Alternatively, for detecting Endo IV activity, the uracil base in the probe was first converted into an AP site by a tool enzyme UDG. Next, the AP site was cleaved by the target enzyme, achieving the Endo IV recognition. The signal was then generated and amplified in the same way as those in the UDG activity assay. The detection limits were as low as 0.00017 U mL(-1) for UDG and 0.11 U mL(-1) for Endo IV, respectively. Moreover, UDG and Endo IV can be well distinguished from their analogs. This method is beneficial for properly evaluating the UBER process in function studies and disease prognoses.

Structure-Function Relationship of a Plant NCS1 Member – Homology Modeling and Mutagenesis Identified Residues Critical for Substrate Specificity of PLUTO, a Nucleobase Transporter from Arabidopsis

PubMed Central

Witz, Sandra; Panwar, Pankaj; Schober, Markus; Deppe, Johannes; Pasha, Farhan Ahmad; Lemieux, M. Joanne; Möhlmann, Torsten

2014-01-01

Plastidic uracil salvage is essential for plant growth and development. So far, PLUTO, the plastidic nucleobase transporter from Arabidopsis thaliana is the only known uracil importer at the inner plastidic membrane which represents the permeability barrier of this organelle. We present the first homology model of PLUTO, the sole plant NCS1 member from Arabidopsis based on the crystal structure of the benzyl hydantoin transporter MHP1 from Microbacterium liquefaciens and validated by molecular dynamics simulations. Polar side chains of residues Glu-227 and backbones of Val-145, Gly-147 and Thr-425 are proposed to form the binding site for the three PLUTO substrates uracil, adenine and guanine. Mutational analysis and competition studies identified Glu-227 as an important residue for uracil and to a lesser extent for guanine transport. A differential response in substrate transport was apparent with PLUTO double mutants E227Q G147Q and E227Q T425A, both of which most strongly affected adenine transport, and in V145A G147Q, which markedly affected guanine transport. These differences could be explained by docking studies, showing that uracil and guanine exhibit a similar binding mode whereas adenine binds deep into the catalytic pocket of PLUTO. Furthermore, competition studies confirmed these results. The present study defines the molecular determinants for PLUTO substrate binding and demonstrates key differences in structure-function relations between PLUTO and other NCS1 family members. PMID:24621654

Structure-function relationship of a plant NCS1 member--homology modeling and mutagenesis identified residues critical for substrate specificity of PLUTO, a nucleobase transporter from Arabidopsis.

PubMed

Witz, Sandra; Panwar, Pankaj; Schober, Markus; Deppe, Johannes; Pasha, Farhan Ahmad; Lemieux, M Joanne; Möhlmann, Torsten

2014-01-01

Plastidic uracil salvage is essential for plant growth and development. So far, PLUTO, the plastidic nucleobase transporter from Arabidopsis thaliana is the only known uracil importer at the inner plastidic membrane which represents the permeability barrier of this organelle. We present the first homology model of PLUTO, the sole plant NCS1 member from Arabidopsis based on the crystal structure of the benzyl hydantoin transporter MHP1 from Microbacterium liquefaciens and validated by molecular dynamics simulations. Polar side chains of residues Glu-227 and backbones of Val-145, Gly-147 and Thr-425 are proposed to form the binding site for the three PLUTO substrates uracil, adenine and guanine. Mutational analysis and competition studies identified Glu-227 as an important residue for uracil and to a lesser extent for guanine transport. A differential response in substrate transport was apparent with PLUTO double mutants E227Q G147Q and E227Q T425A, both of which most strongly affected adenine transport, and in V145A G147Q, which markedly affected guanine transport. These differences could be explained by docking studies, showing that uracil and guanine exhibit a similar binding mode whereas adenine binds deep into the catalytic pocket of PLUTO. Furthermore, competition studies confirmed these results. The present study defines the molecular determinants for PLUTO substrate binding and demonstrates key differences in structure-function relations between PLUTO and other NCS1 family members.

Folate supplementation differently affects uracil content in DNA in the mouse colon and liver

USDA-ARS?s Scientific Manuscript database

High folate intake may increase the risk of cancer, especially in the elderly. The present study examined the effects of ageing and dietary folate on uracil misincorporation into DNA, which has a mutagenic effect, in the mouse colon and liver. Old (18 months; n 42) and young (4 months; n 42) male C5...

Ultramicroelectrode Sensors and Detectors. Considerations of the Stability, Sensitivity, Reproducibility, and Mechanism of Ion Transport in Gas Phase Chromatography and in High Performance Liquid Phase Chromatography

DTIC Science & Technology

1988-07-15

solvents were used. For high performance liquid chromatographic studies, the DNA bases thymine, adenine, cytocine, uracil, and guanine (Aldrich...this experiment. The DNA bases guanine, adenine, cytocine, uracil, and thymine were detected for a gradient elution of a mixture of the bases in a

Prognostic factors of pathologic stage IB non-small cell lung cancer.

PubMed

Yano, Motoki; Sasaki, Hidefumi; Moriyama, Satoru; Kawano, Osamu; Hikosaka, Yu; Fujii, Yoshitaka

2011-01-01

In pathologic IB (pIB) non-small cell lung cancer, especially in adenocarcinoma, adjuvant chemotherapy with uracil-tegafur is widely recognized as being effective. The aim of this study was to determine the prognostic factors of pIB disease. Sixty patients who were diagnosed with pIB disease between 2004 and 2007 were retrospectively analyzed. Of 60 patients, 22 (36.7%) opted for surgery plus adjuvant chemotherapy with uracil-tegafur, whereas 38 (63.3%) opted for surgery only. The oral administration dose of uracil-tegafur was 400 mg/body. Compliance of adjuvant chemotherapy with uracil-tegafur was 65.5% in 12 months, 57.3% in 24 months. Adjuvant chemotherapy was interrupted in 11 patients because of the recurrence of disease in 3 patients and adverse reaction in 8 patients. Anorexia was the most common adverse reaction. The larger tumor diameter (5 cm<) and p2 pleural invasion were the worse prognostic factors in disease free survival in a univariate analysis and a multivariate analysis (hazard ratio = 0.26 and 0.25; p = 0.028 and 0.032, respectively). The prognosis of the patients with pleural invasion and a tumor diameter >5 cm was poor, and these, partly support the forthcoming classification.

Alternative bases in the RNA world: the prebiotic synthesis of urazole and its ribosides

NASA Technical Reports Server (NTRS)

Kolb, V. M.; Dworkin, J. P.; Miller, S. L.

1994-01-01

Urazole is a five-membered heterocyclic compound which is isosteric with uracil's hydrogen-bonding segment. Urazole reacts spontaneoulsy with ribose (and other aldoses) to give a mixture of four ribosides: alpha and beta pyranosides and furanosides. This reaction occurs in aqueous solution at mild temperatures. Thermodynamic and kinetic parameters for the reaction of urazole with ribose were determined. In contrast, uracil is completely unreactive with ribose under these conditions. Urazole's unusual reactivity is ascribed to the hydrazine portion of the molecule. Urazole can be synthesized from biuret and hydrazine under prebiotic conditions. The prebiotic synthesis of guanazole, which is isosteric in part to diaminopyrimidine and cytosine, is accomplished from dicyandiamide and hydrazine. Kinetic parameters for both prebiotic reactions were measured. Urazole and guanazole are transparent in the UV, which would be a favorable property in the absence of an ozone layer on the early Earth. Urazole makes hydrogen bonds with adenine in DMSO similar to those of uracil, as established by H NMR. All of these properties make urazole an attractive potential precursor to uracil and guanazole a potential precursor to cytosine in the RNA or pre-RNA world.

Tautomerism in cytosine and uracil: an experimental and theoretical core level spectroscopic study.

PubMed

Feyer, Vitaliy; Plekan, Oksana; Richter, Robert; Coreno, Marcello; Vall-llosera, Gemma; Prince, Kevin C; Trofimov, Alexander B; Zaytseva, Irina L; Moskovskaya, Tatyana E; Gromov, Evgeniy V; Schirmer, Jochen

2009-05-14

The O, N, and C 1s core level photoemission spectra of the nucleobases cytosine and uracil have been measured in the vapor phase, and the results have been interpreted via theoretical calculations. Our calculations accurately predict the relative binding energies of the core level features observed in the experimental photoemission results and provide a full assignment. In agreement with previous work, a single tautomer of uracil is populated at 405 K, giving rise to relatively simple spectra. At 450 K, three tautomers of cytosine, one of which may consist of two rotamers, are identified, and their populations are determined. This resolves inconsistencies between recent laser studies of this molecule in which the rare imino-oxo tautomer was not observed and older microwave spectra in which it was reported.

Carbon Stars In Andromeda. II. Demographics and Photometric Properties

NASA Astrophysics Data System (ADS)

Guhathakurta, Puragra; Hamren, K.; Dorman, C.; Toloba, E.; Seth, A.; Dalcanton, J.; Nayak, A.; PHAT Collaboration; SPLASH Collaboration

2014-01-01

This is the second of two talks about a sample of newly-discovered carbon stars in the Andromeda galaxy (M31). As explained in the first talk, these stars were identified on the basis of their spectroscopic characteristics using Keck/DEIMOS spectra obtained as part of the Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo (SPLASH) survey. We explore the physical properties of strong and weak carbon stars using photometric data from a Hubble Space Telescope Multi-Cycle Treasury program: Panchromatic Hubble Andromeda Treasury (PHAT). The PHAT data set includes deep photometry in six filters: two in the ultraviolet, two in the optical, and two in the near infrared. The carbon stars appear to be in the asymptotic giant branch stage of their evolution as evidenced by the fact that they lie above the tip of the red giant branch and are cleanly separated from normal (i.e., oxygen-rich) giants in color-magnitude diagrams. We study the spatial distribution of carbon stars in M31 and use kinematics to determine whether they belong to M31's thin disk, thick disk, or spheroid. These carbon stars serve as highly visible tracers of the intermediate-mass, intermediate-age stellar population in M31; they are important markers in the study of the star-formation history of the galaxy. This research was part of the SPLASH and PHAT collaboration. We are grateful to the National Science Foundation and NASA for funding support. AN's participation was under the auspices of UCSC's Science Internship Program.

A Bayesian Approach to Locating the Red Giant Branch Tip Magnitude. I.

NASA Astrophysics Data System (ADS)

Conn, A. R.; Lewis, G. F.; Ibata, R. A.; Parker, Q. A.; Zucker, D. B.; McConnachie, A. W.; Martin, N. F.; Irwin, M. J.; Tanvir, N.; Fardal, M. A.; Ferguson, A. M. N.

2011-10-01

We present a new approach for identifying the tip of the red giant branch (TRGB) which, as we show, works robustly even on sparsely populated targets. Moreover, the approach is highly adaptable to the available data for the stellar population under study, with prior information readily incorporable into the algorithm. The uncertainty in the derived distances is also made tangible and easily calculable from posterior probability distributions. We provide an outline of the development of the algorithm and present the results of tests designed to characterize its capabilities and limitations. We then apply the new algorithm to three M31 satellites: Andromeda I, Andromeda II, and the fainter Andromeda XXIII, using data from the Pan-Andromeda Archaeological Survey (PAndAS), and derive their distances as 731(+ 5) + 18 (- 4) - 17 kpc, 634(+ 2) + 15 (- 2) - 14 kpc, and 733(+ 13) + 23 (- 11) - 22 kpc, respectively, where the errors appearing in parentheses are the components intrinsic to the method, while the larger values give the errors after accounting for additional sources of error. These results agree well with the best distance determinations in the literature and provide the smallest uncertainties to date. This paper is an introduction to the workings and capabilities of our new approach in its basic form, while a follow-up paper shall make full use of the method's ability to incorporate priors and use the resulting algorithm to systematically obtain distances to all of M31's satellites identifiable in the PAndAS survey area.

Hubble's High-Definition Panoramic View of the Andromeda Galaxy

NASA Image and Video Library

2017-12-08

Zoom into the Andromeda galaxy. The largest NASA Hubble Space Telescope image ever assembled, this sweeping view of a portion of the Andromeda galaxy (M31) is the sharpest large composite image ever taken of our galactic neighbor. Though the galaxy is over 2 million light-years away, the Hubble telescope is powerful enough to resolve individual stars in a 61,000-light-year-long section of the galaxy's pancake-shaped disk. It's like photographing a beach and resolving individual grains of sand. And, there are lots of stars in this sweeping view — over 100 million, with some of them in thousands of star clusters seen embedded in the disk. This ambitious photographic cartography of the Andromeda galaxy represents a new benchmark for precision studies of large spiral galaxies which dominate the universe's population of over 100 billion galaxies. Never before have astronomers been able to see individual stars over a major portion of an external spiral galaxy. Most of the stars in the universe live inside such majestic star cities, and this is the first data that reveal populations of stars in context to their home galaxy. Credit: NASA, ESA, and G. Bacon (STScI) NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Thermal width of the upsilon at large 't Hooft coupling.

PubMed

Noronha, Jorge; Dumitru, Adrian

2009-10-09

We use the anti-de Sitter/conformal field theory correspondence to show that the heavy quark (static) potential in a strongly coupled plasma develops an imaginary part at finite temperature. Thus, deeply bound heavy quarkonia states acquire a small nonzero thermal width when the 't Hooft coupling lambda = g2N(c) > 1 and the number of colors N(c) --> infinity. In the dual gravity description, this imaginary contribution comes from thermal fluctuations around the bottom of the classical sagging string in the bulk that connects the heavy quarks located at the boundary. We predict a strong suppression of Upsilon's in heavy-ion collisions and discuss how this may be used to estimate the initial temperature.

Hadro-quarkonia dynamics and Z{sub b} states

DOE Office of Scientific and Technical Information (OSTI.GOV)

Danilkin, I. V.; Orlovsky, V. D., E-mail: orlovskii@itep.ru; Simonov, Yu. A.

2013-09-15

Dynamics of hadro-quarkonium system is formulated, based on the channel coupling of a light hadron (h) and heavy quarkonium (QQ-bar) to heavy-light mesons (Qq-bar, Q-barq). Equations for hadro-quarkonium amplitudes and resonance positions are written explicitly, and numerically calculated for the special case of {pi} Greek-Upsilon-With-Hook-Symbol (nS) (n = 1, 2, 3). It is also shown that the recently observed by Belle two peaks Z{sub b}(10610) and Z{sub b}(10650) are in agreement with the proposed theory. It is demonstrated that theory predicts peaks at the BB*, B*B* thresholds in all available {pi} Greek-Upsilon-With-Hook-Symbol (nS) channels.

Chandra Finds a "Cool" Black Hole at the Heart of the Andromeda Galaxy

NASA Astrophysics Data System (ADS)

2000-01-01

In its first look at the Andromeda Galaxy (M31), NASA's Chandra X-ray Observatory has found that the gas funneling into a supermassive black hole in the heart of this galaxy is a "cool" million degrees Celsius. This unexpected result adds one more quirk to the strange behavior previously observed at the center of M31. A team of scientists from the Harvard-Smithsonian Center for Astrophysics, Cambridge, Mass., reported on this observation at the 195th national meeting of the American Astronomical Society in Atlanta, Ga. The team is led by Drs. Stephen Murray and Michael Garcia, and includes Drs. Frank Primini, William Forman, Christine Jones, and Ralph Kraft. Chandra took its first X-ray picture of the Andromeda Galaxy with the Advanced CCD Imaging Spectrometer on October 13, 1999. More than100 individual X-ray sources were seen. One of these sources was at the previously determined position of the central supermassive black hole, which has the mass of 30 million suns. With many X-ray emitting stars in the center of M31 there was a slight chance that one of them might be at this position just by coincidence. The low temperature of the suspected central source, as compared to the other sources, gave the team the clue they needed. "When we found that what we suspected was the central object was also anomalously cool, we KNEW we had it- one coincidence might be believable, but two was too much to ignore!" said Garcia. While the gas falling into the central black hole is cool, it is only cool by comparison to the 100 other X-ray sources in the Andromeda Galaxy. To be detected by an X-ray telescope, the gas must have a temperature of more than a million degrees Celsius. The typical X-ray star in the Andromeda Galaxy has a temperature of several tens of millions of degrees. In contrast, the temperature of the supermassive black hole source is a few million degrees Celsius. The Andromeda Galaxy is our nearest neighbor spiral galaxy at a distance of two million light years. It is similar to our own Milky Way in size, shape, and also contains a supermassive black hole at the center. This central black hole has always been a bit odd when compared to central black holes in similar galaxies. Based on its X-ray luminosity, it is much fainter in radio waves than expected. Such behavior, coupled with Chandra's discovery of the low temperature gas, cannot be accommodated by standard models developed for supermassive black holes in galaxies like the Milky Way and Andromeda. "The Chandra observation is telling us that an entirely different flow pattern is operating around the Andromeda black hole," said Dr. Eliot Quataert, of the Institute for Advanced Study, Princeton, N.J. "This will require a different class of models than usually considered." One possibility is that the gas undergoes a large scale boiling motion which slows down the rate at which gas falls into the black hole. The best previous X-ray pictures were not sharp enough to clearly distinguish the X-ray source associated with the black hole in the center of the Andromeda Galaxy nor did they give information about the temperature of the source. "A good analogy might be to say that previous X-ray images were taken with a slightly out-of-focus black and white camera, while the Chandra image is taken with a sharp, color camera" said Murray. Another intriguing feature of this observation is the detection of a diffuse glow that extends for a thousand light years around the central region. It is not known if this is due to many individual sources, or to a hot wind expanding out from the center. "This is just a first, quick look at our nearest Milky Way analog," Murray emphasized. "I expect that our future pictures will lead to more exciting discoveries in the Andromeda Galaxy." The ACIS instrument was built for NASA by the Massachusetts Institute of Technology, Cambridge, and Pennsylvania State University, University Park. To follow Chandra's progress, visit the Chandra site at: http://chandra.harvard.edu/photo/2000/0007/index.html AND http://chandra.nasa.gov NASA's Marshall Space Flight Center in Huntsville, Ala., manages the Chandra program. TRW, Inc., Redondo Beach, Calif., is the prime contractor for the spacecraft. The Smithsonian's Chandra X-ray Center controls science and flight operations from Cambridge, Mass. High resolution digital versions of the X-ray image (JPG, 300 dpi TIFF ) and other information associated with this release are available on the Internet at: http://chandra.harvard.edu/

Synthesis and antiviral activity of 3'-deoxy-3'-C-hydroxymethyl nucleosides.

PubMed

Bamford, M J; Coe, P L; Walker, R T

1990-09-01

A series of 3'-branched-chain sugar nucleosides, in particular 3'-deoxy-3'-C-hydroxmethyl nucleosides, have been synthesized and evaluated as antiviral agents. Reaction of 1-(2,3-epoxy-5-O-trityl-beta-D-lyxo-pentofuranosyl) derivatives 12 and 13, of uracil and thymine, respectively, with 5,6-dihydro-2-lithio-5-methyl-1,3,5-dithiazine 14 afforded the corresponding 3'-functionalized nucleosides 15 and 16, respectively. Replacement of the trityl group with tertbutyldiphenylsilyl allowed high yielding hydrolysis of the 3'-function to give the 3'-deoxy-3'-C-formyl-beta-D-arabino-pentofuranosyl nucleosides 21 and 22. Desilylation afforded the 1-(3-deoxy-3-C-formyl-beta- D-lyxo-pentofuranosyl) 3',5'-O-hemiacetal nucleosides 33 and 34, respectively. Reduction of the formyl group of 21 and 22, followed by desilylation, yielded the 3'-deoxy-3'-C-(hydroxymethyl)-beta-D-arabino- pentofuranosyl) analogues 7 and 8, respectively. The uracil base moiety of 7 was converted to 5-iodouracil and then to (E)-5-(2-bromovinyl)uracil to furnish an analogue 10 of BVaraU. The 1-(3-deoxy-3-C-(hydroxymethyl)-beta-D-lyxo-pentofuranosyl) and 1-(2,3-dideoxy-3-C-(hydroxymethyl)-beta-D-erythro-pentofuranosyl) derivatives of uracil (31 and 6, respectively) and 5-iodouracil (32 and 9, respectively) were also obtained. All novel, fully deprotected nucleoside analogues were evaluated for antiviral activity against human immunodeficiency virus type-1, herpes simplex virus types-1 and -2, varicella zoster virus, human cytomegalovirus and influenza A. Of the compounds tested only (E)-5-(2-bromovinyl)-1-[3-deoxy- 3-C-(hydroxymethyl)-beta-D-arabino-pentofuranosyl]uracil (10) inhibited VZV (alone), but did so at concentrations well below the cytotoxicity threshold.

Characterization of the Adsorption of Nucleic Acid Bases onto Ferrihydrite via Fourier Transform Infrared and Surface-Enhanced Raman Spectroscopy and X-ray Diffractometry.

PubMed

Canhisares-Filho, José E; Carneiro, Cristine E A; de Santana, Henrique; Urbano, Alexandre; da Costa, Antonio C S; Zaia, Cássia T B V; Zaia, Dimas A M

2015-09-01

Minerals could have played an important role in concentration, protection, and polymerization of biomolecules. Although iron is the fourth most abundant element in Earth's crust, there are few works in the literature that describe the use of iron oxide-hydroxide in prebiotic chemistry experiments. In the present work, the interaction of adenine, thymine, and uracil with ferrihydrite was studied under conditions that resemble those of prebiotic Earth. At acidic pH, anions in artificial seawater decreased the pH at the point of zero charge (pHpzc) of ferrihydrite; and at basic pH, cations increased the pHpzc. The adsorption of nucleic acid bases onto ferrihydrite followed the order adenine > uracil > thymine. Adenine adsorption peaked at neutral pH; however, for thymine and uracil, adsorption increased with increasing pH. Electrostatic interactions did not appear to play an important role on the adsorption of nucleic acid bases onto ferrihydrite. Adenine adsorption onto ferrihydrite was higher in distilled water compared to artificial seawater. After ferrihydrite was mixed with artificial seawaters or nucleic acid bases, X-ray diffractograms and Fourier transform infrared spectra did not show any change. Surface-enhanced Raman spectroscopy showed that the interaction of adenine with ferrihydrite was not pH-dependent. In contrast, the interactions of thymine and uracil with ferrihydrite were pH-dependent such that, at basic pH, thymine and uracil lay flat on the surface of ferrihydrite, and at acidic pH, thymine and uracil were perpendicular to the surface. Ferrihydrite adsorbed much more adenine than thymine; thus adenine would have been better protected against degradation by hydrolysis or UV radiation on prebiotic Earth.

Excision Repair-Initiated Enzyme-Assisted Bicyclic Cascade Signal Amplification for Ultrasensitive Detection of Uracil-DNA Glycosylase.

PubMed

Wang, Li-Juan; Ren, Ming; Zhang, Qianyi; Tang, Bo; Zhang, Chun-Yang

2017-04-18

Uracil-DNA glycosylase (UDG) is an important base excision repair (BER) enzyme responsible for the repair of uracil-induced DNA lesion and the maintenance of genomic integrity, while the aberrant expression of UDG is associated with a variety of cancers. Thus, the accurate detection of UDG activity is essential to biomedical research and clinical diagnosis. Here, we develop a fluorescent method for ultrasensitive detection of UDG activity using excision repair-initiated enzyme-assisted bicyclic cascade signal amplification. This assay involves (1) UDG-actuated uracil-excision repair, (2) excision repair-initiated nicking enzyme-mediated isothermal exponential amplification, (3) ribonuclease H (RNase H)-induced hydrolysis of signal probes for generating fluorescence signal. The presence of UDG enables the removal of uracil from U·A pairs and generates an apurinic/apyrimidinic (AP) site. Endonuclease IV (Endo IV) subsequently cleaves the AP site, resulting in the break of DNA substrate. The cleaved DNA substrate functions as both a primer and a template to initiate isothermal exponential amplification, producing a large number of triggers. The resultant trigger may selectively hybridize with the signal probe which is modified with FAM and BHQ1, forming a RNA-DNA heterogeneous duplex. The subsequent hydrolysis of RNA-DNA duplex by RNase H leads to the generation of fluorescence signal. This assay exhibits ultrahigh sensitivity with a detection limit of 0.0001 U/mL, and it can even measure UDG activity at the single-cell level. Moreover, this method can be applied for the measurement of kinetic parameters and the screening of inhibitors, thereby providing a powerful tool for DNA repair enzyme-related biomedical research and clinical diagnosis.

Temperature Dependence of the Collisional Removal of O2(A(sup 3)Sigma(sup +)(sub u), upsilon=9 ) with O2 and N2

NASA Technical Reports Server (NTRS)

Hwang, Eunsook S.; Copeland, Richard A.

1997-01-01

The temperature dependence of the collisional removal of O2 molecules in the upsilon = 9 level of the A(sup 3)Sigma(sup +)(sub u) electronic state has been studied for the colliders O2 and N2, over the temperature range 150 to 300 K. In a cooled flow cell, the output of a pulsed dye laser excites the O2 to the upsilon = 9 level of the A(sup 3)Sigma(sup +)(sub u) state, and the output of a time-delayed second laser monitors the temporal evolution of this level via a resonance-enhanced ionization. We find the u thermally averaged removal cross section for O2 collisions is constant (approx. 10 A(sup 2)) between room temperature and 200 K, then increases rapidly with decreasing temperature, doubling by 150 K. In contrast, the N2 cross section at 225 K is approx. 8% smaller and gradually increases to a value at 150 K that is approx. 60% larger than the room temperature value. The difference between the temperature dependence of the O2 and N2 collision cross section implies that the removal by oxygen becomes more important at the lower temperatures found in the mesosphere, but removal by N2 still dominates.

Participation in the ARGUS experiment at the DORIS collider at DESY, Hamburg, Germany

DOE Office of Scientific and Technical Information (OSTI.GOV)

Darden, C.

1986-03-27

Progress reported for 1985 includes publishing final results for investigation of F mesons. Particle decays were sought including a gamma line at 9.46 GeV. One such decay was Upsilon(1S)..--> gamma..H/sup 0/. A search for fractionally charged particles is reported. The muon pair branching ratio was determined for decays of the Upsilon(2S). Six anti-deuterons were seen in a data sample of over 720,000 electron-positron annihilation events. A clear D/sup 0/ signal was seen in the K/sup +/K/sup -/ channel. Results were obtained for the radiative transitions from the Upsilon(2S) to the 1/sup 3/P states of the banti-b system. Fifteen events weremore » also seen which were interpreted to be the color suppressed decay of a B meson to J/psi. A new upper limit was set for the mass of the tau neutrino. A CAMAC booster was used to reduce dead time in the experiment. New preamplifiers raised the vertex drift chambers enough above the electromagnetic noise of the storage ring that it was no longer a problem. The performance of the inner compensation coils, storage ring, and main drift chamber are reported, as well as the time of flight, shower, and muon counters. (LEW)« less

Observation of the $$\\chi_\\mathrm{b1}$$(3P) and $$\\chi_\\mathrm{b2}$$(3P) and measurement of their masses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sirunyan, Albert M; et al.

Themore » $$\\chi_\\mathrm{b1}$$(3P) and $$\\chi_\\mathrm{b3}$$(3P) states are observed through their $$\\Upsilon$$(3S) $$\\gamma$$ decays, using an event sample of proton-proton collisions collected by the CMS experiment at the CERN LHC. data were collected at a center-of-mass energy of 13 TeV and correspond to an integrated luminosity of 80.0 fb$$^{-1}$$. $$\\Upsilon$$(3S) mesons are identified through their dimuon decay channel, while the low-energy photons are detected after converting to e$^+$e$^-$ pairs in the silicon tracker, leading to a $$\\chi_\\mathrm{b}$$(3P) mass resolution of 2.2 MeV. This is the first time that the $J =$ 1 and 2 states are well resolved and their masses individually measured: 10$$\\,$$513.42 $$\\pm$$ 0.41 (stat) $$\\pm$$ 0.18 (syst) MeV and 10$$\\,$$524.02 $$\\pm$$ 0.57 (stat) $$\\pm$$ 0.18 (syst) MeV; they are determined with respect to the world-average value of the $$\\Upsilon$$(3S) mass, which has an uncertainty of 0.5 MeV. mass splitting is measured to be 10.60 $$\\pm$$ 0.64 (stat) $$\\pm$$ 0.17 (syst) MeV.« less

Electronic structure of uracil-like nucleobases adsorbed on Si(001): uracil, thymine and 5-fluorouracil

NASA Astrophysics Data System (ADS)

Molteni, Elena; Onida, Giovanni; Cappellini, Giancarlo

2016-04-01

We study the electronic properties of the Si(001):Uracil, Si(001):Thymine, and Si(001):5-Fluorouracil systems, focusing on the Si dimer-bridging configuration with adsorption governed by carbonyl groups. While the overall structural and electronic properties are similar, with small differences due to chemical substitutions, much larger effects on the surface band dispersion and bandgap show up as a function of the molecular orientation with respect to the surface. An off-normal orientation of the molecular planes is favored, showing larger bandgap and lower total energy than the upright position. We also analyze the localization of gap-edge occupied and unoccupied surface states. Supplementary material in the form of one pdf file available from the Journal web page at http://dx.doi.org/10.1140/epjb/e2016-70011-1

Electron-induced hydrogen loss in uracil in a water cluster environment

NASA Astrophysics Data System (ADS)

Smyth, M.; Kohanoff, J.; Fabrikant, I. I.

2014-05-01

Low-energy electron-impact hydrogen loss due to dissociative electron attachment (DEA) to the uracil and thymine molecules in a water cluster environment is investigated theoretically. Only the A'-resonance contribution, describing the near-threshold behavior of DEA, is incorporated. Calculations are based on the nonlocal complex potential theory and the multiple scattering theory, and are performed for a model target with basic properties of uracil and thymine, surrounded by five water molecules. The DEA cross section is strongly enhanced when the attaching molecule is embedded in a water cluster. This growth is due to two effects: the increase of the resonance lifetime and the negative shift in the resonance position due to interaction of the intermediate negative ion with the surrounding water molecules. A similar effect was earlier found in DEA to chlorofluorocarbons.

Hadronic Transitions from Upsilon (2S) to Upsilon (1s) and Upsilon Dipion Transitions at Energies Near the Upsilon (4S)

NASA Astrophysics Data System (ADS)

Kotoy, Sergei Anatolievich

This dissertation consists of two closely related analyses, both of which were performed using data collected with the CLEO II detector at the Cornell Electron Storage Ring. In the first analysis, using the world largest data sample of Υ(2 S) events, we have investigated the hadronic transitions between the Υ(2S) and the Υ(1S), i.e. decays of the Υ(2S) into the Υ(1S), plus a pair of pions ( p+p- or p0p0 ), a single η or a single p0 . The dipion transitions U(2S)-->U( 1S)pp were studied most closely, by using two different techniques: ``exclusive'' and ``inclusive''. In these measurements we determine the U(2S)-->U( 1S)pp branching ratios, and, by combining the exclusive and inclusive results, we derive the Υ(1S), leptonic branching ratios Bee and Bmm . Parameters of the ππ system in the dipion transitions (dipion invariant mass spectra, angular distributions) were analyzed and found to be consistent with current theoretical models. Lastly, we searched for the η and single π0 transitions and obtained upper limits on the branching ratios B(U(2S) -->U(1S)h ) and B(U(2S) -->U(1S)p 0) . In the second analysis, the data collected at the center of mass energies near the Υ(4S) were used to search for the dipion transition between pairs of Υ resonances. As a result of this search, we established upper limits on the branching ratios of the dipion transitions post='par'>p+p- and U(4S)-->U( 1S)p+p- , and measured the cross-sections for the radiative production of Υ(3 S) and Υ(2S) resonances e+e--->U(nS) g at the center of mass energies of Ecm = 10.58 GeV and Ecm = 10.52 GeV.

Enzymatic cleavage of uracil-containing single-stranded DNA linkers for the efficient release of affinity-selected circulating tumor cells.

PubMed

Nair, Soumya V; Witek, Małgorzata A; Jackson, Joshua M; Lindell, Maria A M; Hunsucker, Sally A; Sapp, Travis; Perry, Caroline E; Hupert, Mateusz L; Bae-Jump, Victoria; Gehrig, Paola A; Wysham, Weiya Z; Armistead, Paul M; Voorhees, Peter; Soper, Steven A

2015-02-21

We report a novel strategy to enzymatically release affinity-selected cells, such as circulating tumor cells (CTCs), from surfaces with high efficiency (∼90%) while maintaining cell viability (>85%). The strategy utilizes single-stranded DNAs that link a capture antibody to the surfaces of a CTC selection device. The DNA linkers contain a uracil residue that can be cleaved.

Aging of Escherichia coli

PubMed Central

Clifton, C. E.

1966-01-01

Clifton, C. E. (Stanford University, Stanford, Calif.). Aging of Escherichia coli. J. Bacteriol. 92:905–912. 1966.—The rates of endogenous and exogenous (glucose) respiration decreased much more rapidly than did the viable count during the first 24 hr of aging of washed, C14-labeled cells of Escherichia coli K-12 suspended in a basal salt medium devoid of ammonium salts. The rates of decrease of respiration and of death approached each other as the age of the cells increased, but death was not the only factor involved in decreased respiratory activity of the suspensions. The greatest decrease in cellular contents with aging was noted in the ribonucleic acid fraction, of which the ribose appeared to be oxidized, while uracil accumulated in the suspension medium. The viable count and respiratory activities remained higher in glucose-fed than in nonfed suspensions. Proline-labeled cells fed glucose tended to lose more of their proline and to convert more proline into C14O2 than in unfed controls. On the other hand, uracil-labeled cells fed glucose retained more of the uracil than did nonfed cells, but glucose elicited some oxidation of uracil. An exogenous energy source such as glucose aided in the maintenance of a population, but it was not the only factor needed for such maintenance. PMID:5332874

Product release mechanism and the complete enzyme catalysis cycle in yeast cytosine deaminase (yCD): A computational study.

PubMed

Zhao, Yuan; She, Nai; Zhang, Xin; Wang, Chaojie; Mo, Yirong

2017-08-01

Yeast cytosine deaminase (yCD) is critical in gene-directed enzyme prodrug therapy as it catalyzes the hydrolytic deamination of cytosine. The product (uracil) release process is considered as rate-limiting in the whole enzymatic catalysis and includes the cleavage of the uracil-metal bond and the delivery of free uracil out of the reactive site. Herein extensive combined random acceleration molecular dynamics (RAMD) and molecular dynamics (MD) simulations coupled with the umbrella sampling technique have been performed to study the product transport mechanism. Five channels have been identified, and the thermodynamic and dynamic characterizations for the two most favorable channels have been determined and analyzed. The free energy barrier for the most beneficial pathway is about 13kcal/mol and mainly results from the cleavage of hydrogen bonds between the ligand uracil and surrounding residues Asn51, Glu64, and Asp155. The conjugated rings of Phe114 and Trp152 play gating and guiding roles in the product delivery via π⋯π van der Waals interactions with the product. Finally, the full cycle of the enzymatic catalysis has been determined, making the whole process computationally more precise. Copyright © 2017 Elsevier B.V. All rights reserved.

Photoelectron spectroscopy of the 6-azauracil anion.

PubMed

Chen, Jing; Buonaugurio, Angela; Dolgounitcheva, Olga; Zakrzewski, V G; Bowen, Kit H; Ortiz, J V

2013-02-14

We report the photoelectron spectrum of the 6-azauracil anion. The spectrum is dominated by a broad band exhibiting a maximum at an electron binding energy (EBE) of 1.2 eV. This spectral pattern is indicative of a valence anion. Our calculations were carried out using ab initio electron propagator and other many-body methods. Comparison of the anion and corresponding neutral of 6-azauracil with those of uracil shows that substituting a nitrogen atom for C-H at the C6 position of uracil gives rise to significant changes in the electronic structure of 6-azauracil versus that of uracil. The adiabatic electron affinity (AEA) of the canonical 6-azauracil tautomer is substantially larger than that of canonical uracil. Among the five tautomeric, 6-azauracil anions studied computationally, the canonical structure was found to be the most stable. The vertical detachment energies (VDE) of the canonical, valence-bound anion of 6-azauracil and its closest "very-rare" tautomer have been calculated. Electron propagator calculations on the canonical anion yield a VDE value that is in close agreement with the experimentally determined VDE value of 1.2 eV. The AEA value of 6-azauracil, assessed at the CCSD(T) level of theory to be 0.5 eV, corresponds with the EBE value of the onset of the experimental spectrum.

Anti-Wrinkle and Anti-Inflammatory Effects of Active Garlic Components and the Inhibition of MMPs via NF-κB Signaling

PubMed Central

Kim, So Ra; Jung, Yu Ri; An, Hye Jin; Kim, Dae Hyun; Jang, Eun Ji; Choi, Yeon Ja; Moon, Kyoung Mi; Park, Min Hi; Park, Chan Hum; Chung, Ki Wung; Bae, Ha Ram; Choi, Yung Whan; Kim, Nam Deuk; Chung, Hae Young

2013-01-01

Skin aging is a multisystem degenerative process caused by several factors, such as, UV irradiation, stress, and smoke. Furthermore, wrinkle formation is a striking feature of photoaging and is associated with oxidative stress and inflammatory response. In the present study, we investigated whether caffeic acid, S-allyl cysteine, and uracil, which were isolated from garlic, modulate UVB-induced wrinkle formation and effect the expression of matrix-metalloproteinase (MMP) and NF-κB signaling. The results obtained showed that all three compounds significantly inhibited the degradation of type І procollagen and the expressions of MMPs in vivo and attenuated the histological collagen fiber disorder and oxidative stress in vivo. Furthermore, caffeic acid and S-allyl cysteine were found to decrease oxidative stress and inflammation by modulating the activities of NF-κB and AP-1, and uracil exhibited an indirect anti-oxidant effect by suppressing cyclooxygenase-2 (COX-2) and inducible nitric oxide synthase (iNOS) expressions levels and downregulating transcriptional factors. These results suggest that the anti-wrinkle effects of caffeic acid, S-allyl cysteine, and uracil are due to anti-oxidant and/or anti-inflammatory effects. Summarizing, caffeic acid, S-allyl cysteine, and uracil inhibited UVB-induced wrinkle formation by modulating MMP via NF-κB signaling. PMID:24066081

5-Fluorouracil-resistant strain of Methanobacterium thermoautotrophicum.

PubMed

Nagle, D P; Teal, R; Eisenbraun, A

1987-09-01

Growth of Methanobacterium thermoautotrophicum Marburg is inhibited by the pyrimidine, 5-fluorouracil (FU). It was shown previously that methanogenesis is not inhibited to the same extent as growth. A spontaneously occurring FU-resistant strain (RTAE-1) was isolated from a culture of strain Marburg. The growth of both strains was inhibited by 5-fluorodeoxyuridine but not 5-fluorocytosine, and the wild type was more susceptible to inhibition by 5-azauracil and 6-azauracil than was strain RTAE-1. The cellular targets for the pyrimidine analogs are not known. When the accumulation of 14C-labeled uracil or FU by the two strains was compared, the wild type took up 15-fold more radiolabel per cell than did the FU-resistant strain. In the wild type, radiolabel from uracil was incorporated into the soluble pool, RNA, and DNA. The metabolism of uracil appeared to involve a uracil phosphoribosyltransferase activity. Strain Marburg extracts contained this enzyme, whereas FU-resistant strain RTAE-1 extracts had less than 1/10 as much activity. Although it is possible that a change in permeability to the compounds plays a role in the stable resistance of strain RTAE-1, the fact that it lacks the ability to metabolize pyrimidines to nucleotides is sufficient to account for its phenotype.

5-Fluorouracil-resistant strain of Methanobacterium thermoautotrophicum.

PubMed Central

Nagle, D P; Teal, R; Eisenbraun, A

1987-01-01

Growth of Methanobacterium thermoautotrophicum Marburg is inhibited by the pyrimidine, 5-fluorouracil (FU). It was shown previously that methanogenesis is not inhibited to the same extent as growth. A spontaneously occurring FU-resistant strain (RTAE-1) was isolated from a culture of strain Marburg. The growth of both strains was inhibited by 5-fluorodeoxyuridine but not 5-fluorocytosine, and the wild type was more susceptible to inhibition by 5-azauracil and 6-azauracil than was strain RTAE-1. The cellular targets for the pyrimidine analogs are not known. When the accumulation of 14C-labeled uracil or FU by the two strains was compared, the wild type took up 15-fold more radiolabel per cell than did the FU-resistant strain. In the wild type, radiolabel from uracil was incorporated into the soluble pool, RNA, and DNA. The metabolism of uracil appeared to involve a uracil phosphoribosyltransferase activity. Strain Marburg extracts contained this enzyme, whereas FU-resistant strain RTAE-1 extracts had less than 1/10 as much activity. Although it is possible that a change in permeability to the compounds plays a role in the stable resistance of strain RTAE-1, the fact that it lacks the ability to metabolize pyrimidines to nucleotides is sufficient to account for its phenotype. PMID:3624203

The role of baryons in creating statistically significant planes of satellites around Milky Way-mass galaxies

NASA Astrophysics Data System (ADS)

Ahmed, Sheehan H.; Brooks, Alyson M.; Christensen, Charlotte R.

2017-04-01

We investigate whether the inclusion of baryonic physics influences the formation of thin, coherently rotating planes of satellites such as those seen around the Milky Way and Andromeda. For four Milky Way-mass simulations, each run both as dark matter-only and with baryons included, we are able to identify a planar configuration that significantly maximizes the number of plane satellite members. The maximum plane member satellites are consistently different between the dark matter-only and baryonic versions of the same run due to the fact that satellites are both more likely to be destroyed and to infall later in the baryonic runs. Hence, studying satellite planes in dark matter-only simulations is misleading, because they will be composed of different satellite members than those that would exist if baryons were included. Additionally, the destruction of satellites in the baryonic runs leads to less radially concentrated satellite distributions, a result that is critical to making planes that are statistically significant compared to a random distribution. Since all planes pass through the centre of the galaxy, it is much harder to create a plane of a given height from a random distribution if the satellites have a low radial concentration. We identify Andromeda's low radial satellite concentration as a key reason why the plane in Andromeda is highly significant. Despite this, when corotation is considered, none of the satellite planes identified for the simulated galaxies are as statistically significant as the observed planes around the Milky Way and Andromeda, even in the baryonic runs.

A DEEP STUDY OF THE DWARF SATELLITES ANDROMEDA XXVIII AND ANDROMEDA XXIX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Slater, Colin T.; Bell, Eric F.; Martin, Nicolas F.

We present the results of a deep study of the isolated dwarf galaxies Andromeda XXVIII and Andromeda XXIX with Gemini/GMOS and Keck/DEIMOS. Both galaxies are shown to host old, metal-poor stellar populations with no detectable recent star formation, conclusively identifying both of them as dwarf spheroidal galaxies (dSphs). And XXVIII exhibits a complex horizontal branch morphology, which is suggestive of metallicity enrichment and thus an extended period of star formation in the past. Decomposing the horizontal branch into blue (metal-poor, assumed to be older) and red (relatively more metal-rich, assumed to be younger) populations shows that the metal-rich are alsomore » more spatially concentrated in the center of the galaxy. We use spectroscopic measurements of the calcium triplet, combined with the improved precision of the Gemini photometry, to measure the metallicity of the galaxies, confirming the metallicity spread and showing that they both lie on the luminosity–metallicity relation for dwarf satellites. Taken together, the galaxies exhibit largely typical properties for dSphs despite their significant distances from M31. These dwarfs thus place particularly significant constraints on models of dSph formation involving environmental processes such as tidal or ram pressure stripping. Such models must be able to completely transform the two galaxies into dSphs in no more than two pericentric passages around M31, while maintaining a significant stellar population gradient. Reproducing these features is a prime requirement for models of dSph formation to demonstrate not just the plausibility of environmental transformation but the capability of accurately recreating real dSphs.« less

A BAYESIAN APPROACH TO LOCATING THE RED GIANT BRANCH TIP MAGNITUDE. I

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conn, A. R.; Parker, Q. A.; Zucker, D. B.

2011-10-20

We present a new approach for identifying the tip of the red giant branch (TRGB) which, as we show, works robustly even on sparsely populated targets. Moreover, the approach is highly adaptable to the available data for the stellar population under study, with prior information readily incorporable into the algorithm. The uncertainty in the derived distances is also made tangible and easily calculable from posterior probability distributions. We provide an outline of the development of the algorithm and present the results of tests designed to characterize its capabilities and limitations. We then apply the new algorithm to three M31 satellites:more » Andromeda I, Andromeda II, and the fainter Andromeda XXIII, using data from the Pan-Andromeda Archaeological Survey (PAndAS), and derive their distances as 731{sup (+5)+18}{sub (-4)-17} kpc, 634{sup (+2)+15}{sub (-2)-14} kpc, and 733{sup (+13)+23}{sub (-11)-22} kpc, respectively, where the errors appearing in parentheses are the components intrinsic to the method, while the larger values give the errors after accounting for additional sources of error. These results agree well with the best distance determinations in the literature and provide the smallest uncertainties to date. This paper is an introduction to the workings and capabilities of our new approach in its basic form, while a follow-up paper shall make full use of the method's ability to incorporate priors and use the resulting algorithm to systematically obtain distances to all of M31's satellites identifiable in the PAndAS survey area.« less

Diode laser heterodyne observations of silicon monoxide in sunspots - A test of three sunspot models

NASA Technical Reports Server (NTRS)

Glenar, D. A.; Deming, D.; Jennings, D. E.; Kostiuk, T.; Mumma, M. J.

1983-01-01

Absorption features from the 8 micron SiO fundamental (upsilon = 1-0) and hot bands (upsilon = 2-1) have been observed in sunspots at sub-Doppler resolution using a ground-based tunable diode laser heterodyne spectrometer. The observed line widths suggest an upper limit of 0.5 km/s for the microturbulent velocity in sunspot umbrae. Since the silicon monoxide abundance is very sensitive to sunspot temperature, the measured equivalent widths permit an unambiguous determination of the temperature-pressure relation in the upper layers of the umbral atmosphere. In the region of SiO line formation (log P sub g = 3.0-4.5), the results support the sunspot model suggested by Stellmacher and Wiehr (1970).

Addendum: New approach to the resummation of logarithms in Higgs-boson decays to a vector quarkonium plus a photon [Phys. Rev. D 95, 054018 (2017)

DOE PAGES

Bodwin, Geoffrey T.; Chung, Hee Sok; Ee, June-Haak; ...

2017-12-20

In this addendum to Phys. Rev. D 95, 054018 (2017) we recompute the rates for the decays of the Higgs boson to a vector quarkonium plus a photon, where the vector quarkonium is J/psi, Upsilon(1S) Upsilon(2S). We correct an error in the Abel-Pad'e summation formula that was used to carry out the evolution of the quarkonium light-cone distribution amplitude in Phys. Rev. D 95, 054018 (2017). We also correct an error in the scale of quarkonium wave function at the origin in Phys. Rev. D 95, 054018 (2017) and introduce several additional refinements in the calculation.

The Molecular Structure of cis-FONO

NASA Technical Reports Server (NTRS)

Lee, Timothy J.; Dateo, Christopher E.; Rice, Julia E.; Langhoff, Stephen R. (Technical Monitor)

1994-01-01

The molecular structure of cis-FONO has been determined with the CCSD(T) correlation method using an spdf quality basis set. In agreement with previous coupled-cluster calculations but in disagreement with density functional theory, cis-FONO is found to exhibit normal bond distances. The quadratic and cubic force fields of cis-FONO have also been determined in order to evaluate the effect of vibrational averaging on the molecular geometry. Vibrational averaging is found to increase bond distances, as expected, but it does not affect the qualitative nature of the bonding. The CCSD(T)/spdf harmonic frequencies of cis-FONO support our previous assertion that a band observed at 1200 /cm is a combination band (upsilon(sub 3) + upsilon(sub 4)), and not a fundamental.

Addendum: New approach to the resummation of logarithms in Higgs-boson decays to a vector quarkonium plus a photon [Phys. Rev. D 95, 054018 (2017)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bodwin, Geoffrey T.; Chung, Hee Sok; Ee, June-Haak

In this addendum to Phys. Rev. D 95, 054018 (2017) we recompute the rates for the decays of the Higgs boson to a vector quarkonium plus a photon, where the vector quarkonium is J/psi, Upsilon(1S) Upsilon(2S). We correct an error in the Abel-Pad'e summation formula that was used to carry out the evolution of the quarkonium light-cone distribution amplitude in Phys. Rev. D 95, 054018 (2017). We also correct an error in the scale of quarkonium wave function at the origin in Phys. Rev. D 95, 054018 (2017) and introduce several additional refinements in the calculation.

Moderate Resolution Spectroscopy of Substellar Companion Kappa Andromeda B

NASA Astrophysics Data System (ADS)

Wilcomb, Kielan; Konopacky, Quinn; Barman, Travis; Brown, Jessie; Brock, Laci; Macintosh, Bruce; Ruffio, Jean-Baptiste; Marois, Christian

2018-01-01

Recent direct imaging of exoplanets has revealed a population of Jupiter-like objects that orbit at large separations (~10-100 AU) from their host stars. These planets, with masses of ~2-14 MJup and temperatures of ~500-2000 K, remain a problem for the two main planet formation models—core accretion and gravitational instability. OSIRIS observations of directly imaged planets have expanded our understanding of their atmospheres, alluded to their formation, and uncovered individual molecular lines. Here, we present OSIRIS K band spectra of the “super-Jupiter,” Kappa Andromeda b. Kappa Andromeda b has a lower mass limit at the deuterium burning limit, but also has an uncertain age which may indicate the source is a higher mass brown dwarf. The spectra reveal resolved molecular lines from water and CO. We will present atmospheric properties of this object derived from comparison to PHOENIX atmosphere models, and measure a best fit C/O ratio for the source. We will compare our results to atmospheric properties of other brown dwarfs and gas giant planets in an effort to improve our knowledge of intricate atmospheres of young, substellar objects.

Reversible sol-to-gel transformation of uracil gelators: specific colorimetric and fluorimetric sensor for fluoride ions.

PubMed

Xing, Ling-Bao; Yang, Bing; Wang, Xiao-Jun; Wang, Jiu-Ju; Chen, Bin; Wu, Qianhong; Peng, Hui-Xing; Zhang, Li-Ping; Tung, Chen-Ho; Wu, Li-Zhu

2013-03-05

A new type of anthracene organogelator based on uracil was obtained using organic aromatic solvents, cyclohexane, DMSO, ethanol, and ethyl acetate. It was further characterized by field-emission scanning electron microscopy and transmission electron microscopy. Specifically, the resulting organogels were demonstrated to be promising colorimetric and fluorescent sensors toward fluoride ions with high sensitivity and selectivity, accompanying the disruption of the gelators. Spectroscopic study and (1)H NMR titration experiment revealed that the deprotonation of the hydrogen atom on the N position of uracil moiety by fluoride ions is responsible for the recognition events, evidenced by immediate transformation from the sol phase to the gel state upon adding a small amount of a proton solvent, methanol. The process is reversible, with zero loss in sensing activity and sol-to-gel transformation ability even after five runs.

Pyrimidine metabolism in Tritrichomonas foetus.

PubMed Central

Wang, C C; Verham, R; Tzeng, S F; Aldritt, S; Cheng, H W

1983-01-01

The anaerobic parasitic protozoa Tritrichomonas foetus is found incapable of de novo pyrimidine biosynthesis by its failure to incorporate bicarbonate, aspartate, or orotate into pyrimidine nucleotides or nucleic acids. Uracil phosphoribosyltransferase in the cytoplasm provides the major pyrimidine salvage for the parasite. Exogenous uridine and cytidine are mostly converted to uracil by uridine phosphorylase and cytidine deaminase in T. foetus prior to incorporation. T. foetus cannot incorporate labels from exogenous uracil or uridine into DNA; it has no detectable dihydrofolate reductase or thymidylate synthetase and is resistant to methotrexate, pyrimethamine, trimethoprim, and 5-bromovinyldeoxyuridine at millimolar concentrations. It has an enzyme thymidine phosphotransferase in cellular fraction pelleting at 100,000 X g that can convert exogenous thymidine to TMP via a phosphate donor such as p-nitrophenyl phosphate or nucleoside 5'-monophosphate. Thymidine salvage in T. foetus is thus totally dissociated from other pyrimidine salvage. PMID:6573672

The study of interaction between PFOA/PFOS and uracil by topology quality and spectroscopic analysis

NASA Astrophysics Data System (ADS)

Xu, Hui-Ying; Zhu, Jian-Qing; Wang, Wei; Xu, Xiao-Lu; Lu, Yin

2014-02-01

It has been established that perfluorooctanoic acid (PFOA) and perfluorooctane sulfonate (PFOS) can be considered as emerging persistent organic pollutants. In recent years, there was increasing distribution of PFOA/PFOS in environmental systems, and accumulation and toxic effects of PFOA/PFOS in human body. In this paper, quantum chemistry methods were employed to study the interaction between perfluorinated organic pollutants and base (uracil). The results showed that there were four stable binding modes between the two perfluorinated compounds with uracil, especially the second mode which caused the most detrimental physiological functional response. NBO analysis showed that reactive hydrogen in the two perfluorinated compounds had the greatest effect on the hydrogen bond. The nature of the hydrogen bond formed between the two perfluorinated compounds and base was investigated using the AIM theory. The changes of spectroscopic properties in complexes were analyzed by IR and NMR spectra.

Exocrine secretions of the andromeda lace bugStephanitis takeyai (Hemiptera: Tingidae).

PubMed

Oliver, J E; Lusby, W R; Neal, J W

1990-07-01

The four major components of the setal exudate of nymphs of the andromeda lace bug,Stephanitis takeyai, were identified. They are 7-hydroxy-3-nonylchromanone1, the novel 3,5-dihydroxy-2-dodecanoylcyclohex-2-en-1-one2,2',6'-dihydroxydodecanophenone3, and its 3-hydroxy derivative4. Only three species ofStephanitis commonly occur in the United States; withS. takeyai we have now identified the major compounds secreted by each of these species. The individual species of the genus are chemotaxonomically distinct and are characterized by the oxidation states of the secreted compounds.

H2 emission as a tracer of molecular hydrogen: Large-scale observations of Orion

NASA Technical Reports Server (NTRS)

Luhman, M. L.; Jaffe, D. T.; Keller, L. D.; Pak, Soojong

1994-01-01

We have detected extremely extended (greater than 1.5 deg, or 12 pc) near-infrared H2 line emission from the Orion A molecular cloud. We have mapped emission in the 1.601 micrometer(s) upsilon = 6 - 4 Q(1) and 2.121 micrometer(s) upsilon = 1 - 0 S(1) lines of H2 along a approx. 2 deg R.A. cut and from a 6' x 6' region near theta(sup 1) Ori C. The surface brightness of the extended H2 line emission is 10(exp -6) to 10(exp -5) ergs/s/sq. cm/sr. Based on the distribution and relative strengths of the H2 lines, we conclude that UV fluorescene is most likely the dominant H2 emission mechanism in the outer parts of the Orion cloud. Shock-heated gas does not make a major contribution to the H2 emission in this region. The fluorescent component of the total H2 upsilon = 1 - 0 S(1) luminosity from Orion is 30-40 solar luminosity. Molecular hydrogen excited by UV radiation from nearby OB stars contributes 98%-99% of the global H2 line emission from the Orion molecular cloud, even though this cloud has a powerful shock-excited H2 source in its core. The ability to detect large-scale H2 directly opens up new possibilities for the study of molecular clouds.

Fourier Transform Infrared (FT-IR) Spectroscopy of Atmospheric Trace Gases HCl, NO and SO2

NASA Technical Reports Server (NTRS)

Haridass, C.; Aw-Musse, A.; Dowdye, E.; Bandyopadhyay, C.; Misra, P.; Okabe, H.

1998-01-01

Fourier Transform Infrared (FT-IR) spectral data have been recorded in the spectral region 400-4000/cm of hydrogen chloride and sulfur dioxide with I/cm resolution and of nitric oxide with 0.25 cm-i resolution, under quasi-static conditions, when the sample gas was passed through tubings of aluminum, copper, stainless steel and teflon. The absorbance was measured for the rotational lines of the fundamental bands of (1)H(35)Cl and (1)H(37)Cl for pressures in the range 100-1000 Torr and for the (14)N(16)O molecule in the range 100-300 Torr. The absorbance was also measured for individual rotational lines corresponding to the three modes of vibrations (upsilon(sub 1) - symmetric stretch, upsilon(sub 2) - symmetric bend, upsilon(sub 3) - anti-symmetric stretch) of the SO2 molecule in the pressure range 25-150 Torr. A graph of absorbance versus pressure was plotted for the observed rotational transitions of the three atmospherically significant molecules, and it was found that the absorbance was linearly proportional to the pressure range chosen, thereby validating Beer's law. The absorption cross-sections were determined from the graphical slopes for each rotational transition recorded for the HCl, NO and SO2 species. Qualitative and quantitative spectral changes in the FT-IR data will be discussed to identify and characterize various tubing materials with respect to their absorption features.

The Molecular Basis of the Response to Radiation

DTIC Science & Technology

1999-07-01

S. cerevisiae and S. pombe ). After PCR amplification of human cDNA libraries as described below, PCR products are analyzed on 4% NuSieve agarose...media lacking uracil as well as counterselected against on media containing uracil and 0.1% 5-fluoroorotic acid (5FOA). Induction of the LacZ gene...evolutionarily distant species (S. cerevisiae andS. pombe ) to develop degenerate PCR based primers. For example, a fission yeast homolog of RAD9 named rhp9 was

A new and efficient approach for construction of uridine/uracil auxotrophic mutants in the filamentous fungus Aspergillus oryzae using Agrobacterium tumefaciens-mediated transformation.

PubMed

Nguyen, Khuyen Thi; Ho, Quynh Ngoc; Do, Loc Thi Binh Xuan; Mai, Linh Thi Dam; Pham, Duc-Ngoc; Tran, Huyen Thi Thanh; Le, Diep Hong; Nguyen, Huy Quang; Tran, Van-Tuan

2017-06-01

Aspergillus oryzae is a filamentous fungus widely used in food industry and as a microbial cell factory for recombinant protein production. Due to the inherent resistance of A. oryzae to common antifungal compounds, genetic transformation of this mold usually requires auxotrophic mutants. In this study, we show that Agrobacterium tumefaciens-mediated transformation (ATMT) method is very efficient for deletion of the pyrG gene in different Aspergillus oryzae wild-type strains to generate uridine/uracil auxotrophic mutants. Our data indicated that all the obtained uridine/uracil auxotrophic transformants, which are 5- fluoroorotic acid (5-FOA) resistant, exist as the pyrG deletion mutants. Using these auxotrophic mutants and the pyrG selectable marker for genetic transformation via A. tumefaciens, we could get about 1060 transformants per 10 6 fungal spores. In addition, these A. oryzae mutants were also used successfully for expression of the DsRed fluorescent reporter gene under control of the A. oryzae amyB promoter by the ATMT method, which resulted in obvious red transformants on agar plates. Our work provides a new and effective approach for constructing the uridine/uracil auxotrophic mutants in the importantly industrial fungus A. oryzae. This strategy appears to be applicable to other filamentous fungi to develop similar genetic transformation systems based on auxotrophic/nutritional markers for food-grade recombinant applications.

Apurinic/Apyrimidinic Endonuclease 1 Is the Essential Nuclease during Immunoglobulin Class Switch Recombination

PubMed Central

Masani, Shahnaz; Han, Li

2013-01-01

Immunoglobulin (Ig) class switch recombination (CSR) is initiated by activation-induced cytidine deaminase (AID) that catalyzes numerous DNA cytosine deaminations within switch regions. The resulting uracils are processed by uracil base excision and/or mismatch repair enzymes that ultimately generate switch region DNA double-strand breaks (DSBs). Uracil glycosylase 2 (UNG2) is required for CSR, most likely by removing uracils to generate abasic sites. Although it is presumed that the apurinic/apyrimidinic endonuclease 1 (APE1) generates DNA strand incisions (a prerequisite for CSR) at these abasic sites, a direct test of the requirement for APE1 in CSR has been difficult because of the embryonic lethality of APE1 ablation in mice. Here, we report the successful deletion of the APE1 gene in a mouse B cell line (CH12F3) capable of robust CSR in vitro. In contrast to the general assumption that APE1 is essential for cellular viability, deletion of APE1 in CH12F3 cells has no apparent effect on cell viability or growth. Moreover, CSR in APE1-null CH12F3 cells is drastically reduced, providing direct evidence for an essential role for APE1 in switch region cleavage and CSR. Finally, deletion of AP endonuclease 2 (APE2) has no effect on CSR in either APE1-proficient or -deficient cells. PMID:23382073

Analogues of uracil nucleosides with intrinsic fluorescence (NIF-analogues): synthesis and photophysical properties.

PubMed

Segal, Meirav; Fischer, Bilha

2012-02-28

Uridine cannot be utilized as fluorescent probe due to its extremely low quantum yield. For improving the uracil fluorescence characteristics we extended the natural chromophore at the C5 position by coupling substituted aromatic rings directly or via an alkenyl or alkynyl linker to create fluorophores. Extension of the uracil base was achieved by treating 5-I-uridine with the appropriate boronic acid under the Suzuki coupling conditions. Analogues containing an alkynyl linker were obtained from 5-I-uridine and the suitable boronic acid in a Sonogashira coupling reaction. The uracil fluorescent analogues proposed here were designed to satisfy the following requirements: a minimal chemical modification at a position not involved in base-pairing, resulting in relatively long absorption and emission wavelengths and high quantum yield. 5-((4-Methoxy-phenyl)-trans-vinyl)-2'-deoxy-uridine, 6b, was found to be a promising fluorescent probe. Probe 6b exhibits a quantum yield that is 3000-fold larger than that of the natural chromophore (Φ 0.12), maximum emission (478 nm) which is 170 nm red shifted as compared to uridine, and a Stokes shift of 143 nm. In addition, since probe 6b adopts the anti conformation and S sugar puckering favored by B-DNA, it makes a promising nucleoside analogue to be incorporated in an oligonucleotide probe for detection of genetic material.

Ab Initio Anharmonic Analysis of Vibrational Spectra of Uracil Using the Numerical-Analytic Implementation of Operator Van Vleck Perturbation Theory.

PubMed

Krasnoshchekov, Sergey V; Vogt, Natalja; Stepanov, Nikolay F

2015-06-25

The numerical-analytic implementation of the operator version of the canonical Van Vleck second-order vibrational perturbation theory (CVPT2) is employed for a purely ab initio prediction and interpretation of the infrared (IR) and Raman anharmonic spectra of a medium-size molecule of the diketo tautomer of uracil (2,4(1H,3H)-pyrimidinedione), which has high biological importance as one of the four RNA nucleobases. A nonempirical, semidiagonal quartic potential energy surface (PES) expressed in normal coordinates was evaluated at the MP2/cc-pVTZ level of theory. The quality of the PES was improved by replacing the harmonic frequencies with the "best" estimated CCSD(T)-based values taken from the literature. The theoretical method is enhanced by an accurate treatment of multiple Fermi and Darling-Dennison resonances with evaluation of the corresponding resonance constants W and K (CVPT2+WK method). A prediction of the anharmonic frequencies as well as IR and Raman intensities was used for a detailed interpretation of the experimental spectra of uracil. Very good agreement between predicted and observed vibrational frequencies has been achieved (RMSD ∼4.5 cm(-1)). The model employed gave a theoretically robust treatment of the multiple resonances in the 1680-1790 cm(-1) region. Our new analysis gives the most reliable reassignments of IR and Raman spectra of uracil available to date.

Formation of Nucleobases from the UV Irradiation of Pyrimidine in Astrophysical Ice Analogs

NASA Technical Reports Server (NTRS)

Sandford, Scott A.; Nuevo, Michel; Materese, Christopher K.

2014-01-01

Nucleobases are the informational subunits of DNA and RNA. They consist of Nheterocycles that belong to either the pyrimidine-base group (uracil, cytosine, and thymine) or the purinebase group (adenine and guanine). Several nucleobases, mostly purine bases, have been detected in meteorites [1-3], with isotopic signatures consistent with an extraterrestrial origin [4]. Uracil is the only pyrimidine-base compound formally reported in meteorites [2], though the presence of cytosine cannot be ruled out [5,6]. However, the actual process by which the uracil was made and the reasons for the non-detection of thymine in meteorites have yet to be fully explained. Although no N-heterocycles have ever been observed in the ISM [7,8], the positions of the 6.2-µm interstellar emission features suggest a population of such molecules is likely to be present [9]. In this work we study the formation of pyrimidine-based molecules, including the three nucleobases uracil, cytosine, and thymine from the ultraviolet (UV) irradiation of pyrimidine in ices consisting of several combinations of H(sub2)O, NH(sub3), CH(sub3)OH, and CH(sub4) at low temperature, in order to simulate the astrophysical conditions under which prebiotic species may be formed in the interstellar medium, in the protosolar nebula, and on icy bodies of the Solar System.

The PAndAS Field of Streams: Stellar Structures in the Milky Way Halo toward Andromeda and Triangulum

NASA Astrophysics Data System (ADS)

Martin, Nicolas F.; Ibata, Rodrigo A.; Rich, R. Michael; Collins, Michelle L. M.; Fardal, Mark A.; Irwin, Michael J.; Lewis, Geraint F.; McConnachie, Alan W.; Babul, Arif; Bate, Nicholas F.; Chapman, Scott C.; Conn, Anthony R.; Crnojević, Denija; Ferguson, Annette M. N.; Mackey, A. Dougal; Navarro, Julio F.; Peñarrubia, Jorge; Tanvir, Nial T.; Valls-Gabaud, David

2014-05-01

We reveal the highly structured nature of the Milky Way (MW) stellar halo within the footprint of the Pan-Andromeda Archaeological Survey (PAndAS) photometric survey from blue main sequence (MS) and MS turn-off stars. We map no fewer than five stellar structures within a heliocentric range of ~5-30 kpc. Some of these are known (the Monoceros Ring, the Pisces/Triangulum globular cluster stream), but we also uncover three well-defined stellar structures that could be, at least partly, responsible for the so-called Triangulum/Andromeda and Triangulum/Andromeda 2 features. In particular, we trace a new faint stellar stream located at a heliocentric distance of ~17 kpc. With a surface brightness of Σ V ~ 32-32.5 mag arcsec-2, it follows an orbit that is almost parallel to the Galactic plane north of M31 and has so far eluded surveys of the MW halo as these tend to steer away from regions dominated by the Galactic disk. Investigating our follow-up spectroscopic observations of PAndAS, we serendipitously uncover a radial velocity signature from stars that have colors and magnitudes compatible with the stream. From the velocity of eight likely member stars, we show that this stellar structure is dynamically cold, with an unresolved velocity dispersion that is lower than 7.1 km s-1 at the 90% confidence level. Along with the width of the stream (300-650 pc), its dynamics point to a dwarf-galaxy-accretion origin. The numerous stellar structures we can map in the MW stellar halo between 5 and 30 kpc and their varying morphology is a testament to the complex nature of the stellar halo at these intermediate distances.

Control of head morphogenesis in an invertebrate asexually produced larva-like bud ( Cassiopea andromeda; Cnidaria: Scyphozoa).

PubMed

Thieme, Claudia; Hofmann, Dietrich Kurt

2003-04-01

Scyphopolyps of Cassiopea andromeda propagate asexually by forming larva-like buds which separate from the parent in a developmentally quiescent state. These buds metamorphose into sessile polyps when exposed to specific biogenic, chemical inducers. Morphogenesis of transversely dissected buds indicates the presence of pattern-determining signals; whereas the basal bud fragments may still form a complete scyphistoma the apical bud fragments develop spontaneously in the absence of an inducer into a polyp head without stalk and foot. Based on these findings Neumann (dissertation, Cologne University, 1980) postulated a head-inhibiting signal which is released at the basal pole and inhibits head formation at the apical end. Contrary to this hypothesis dissection itself might induce the development of head structures. The present study deals with the control of polyp head formation in C. andromeda. It concentrates on two points, namely the postulated head inhibitor and the involvement of compounds known to act during metamorphosis (the enzyme protein kinase C and the specific metamorphosis inducer Z-GPGGPA). We found that compared to intact buds and apical bud fragments transversely incised buds reached an intermediate stage of head development. This confirms Neumann's hypothesis. Consequently we focused on the mode of action and the chemical nature of the head-inhibiting signal in C. andromeda. Our results indicate that the head inhibitor may be included in one of six pooled fractions isolated from bud homogenate via gel filtration on a Sephadex G-50 column. The inhibitor is supposed to be water-soluble and to have a molecular weight of 850-1,500 Da. Furthermore we prove that head formation is not promoted by the metamorphosis-inducer Z-GPGGPA but is prevented by the inhibitors psychosine, chelerythrine and RO-32-0432 showing the involvement of protein kinase C in this process.

Comparing M31 and Milky Way satellites: The extended star formation histories of Andromeda II and Andromeda XVI

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weisz, Daniel R.; Skillman, Evan D.; McQuinn, Kristen B. W.

We present the first comparison between the lifetime star formation histories (SFHs) of M31 and Milky Way (MW) satellites. Using the Advanced Camera for Surveys on board the Hubble Space Telescope, we obtained deep optical imaging of Andromeda II (And II; M{sub V} = –12.0; log(M {sub *}/M {sub ☉}) ∼ 6.7) and Andromeda XVI (And XVI; M{sub V} = –7.5; log(M {sub *}/M {sub ☉}) ∼ 4.9) yielding color-magnitude diagrams that extend at least 1 mag below the oldest main-sequence turnoff, and are similar in quality to those available for the MW companions. And II and And XVI showmore » strikingly similar SFHs: both formed 50%-70% of their total stellar mass between 12.5 and 5 Gyr ago (z ∼ 5-0.5) and both were abruptly quenched ∼5 Gyr ago (z ∼ 0.5). The predominance of intermediate age populations in And XVI makes it qualitatively different from faint companions of the MW and clearly not a pre-reionization fossil. Neither And II nor And XVI appears to have a clear analog among MW companions, and the degree of similarity in the SFHs of And II and And XVI is not seen among comparably faint-luminous pairs of MW satellites. These findings provide hints that satellite galaxy evolution may vary substantially among hosts of similar stellar mass. Although comparably deep observations of more M31 satellites are needed to further explore this hypothesis, our results underline the need for caution when interpreting satellite galaxies of an individual system in a broader cosmological context.« less

A new approach to detailed structural decomposition from the splash and phat surveys: Kicked-up disk stars in the Andromeda galaxy?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dorman, Claire E.; Guhathakurta, Puragra; Widrow, Lawrence M., E-mail: cdorman@ucolick.org, E-mail: raja@ucolick.org, E-mail: widrow@astro.queensu.ca

We characterize the bulge, disk, and halo subcomponents in the Andromeda galaxy (M31) over the radial range 4 kpc < R {sub proj} < 225 kpc. The cospatial nature of these subcomponents renders them difficult to disentangle using surface brightness (SB) information alone, especially interior to ∼20 kpc. Our new decomposition technique combines information from the luminosity function (LF) of over 1.5 million bright (20 < m {sub 814W} < 22) stars from the Panchromatic Hubble Andromeda Treasury survey, radial velocities of over 5000 red giant branch stars in the same magnitude range from the Spectroscopic and Photometric Landscape ofmore » Andromeda's Stellar Halo survey, and integrated I-band SB profiles from various sources. We use an affine-invariant Markov chain Monte Carlo algorithm to fit an appropriate toy model to these three data sets. The bulge, disk, and halo SB profiles are modeled as a Sérsic, exponential, and cored power law, respectively, and the LFs are modeled as broken power laws. We present probability distributions for each of 32 parameters describing the SB profiles and LFs of the three subcomponents. We find that the number of stars with a disk-like LF is 5.2% ± 2.1% larger than the number with disk-like (dynamically cold) kinematics, suggesting that some stars born in the disk have been dynamically heated to the point that they are kinematically indistinguishable from halo members. This is the first kinematical evidence for a 'kicked-up disk' halo population in M31. The fraction of kicked-up disk stars is consistent with that found in simulations. We also find evidence for a radially varying disk LF, consistent with a negative metallicity gradient in the stellar disk.« less

The PAndAS field of streams: Stellar structures in the milky way halo toward Andromeda and Triangulum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, Nicolas F.; Ibata, Rodrigo A.; Rich, R. Michael

We reveal the highly structured nature of the Milky Way (MW) stellar halo within the footprint of the Pan-Andromeda Archaeological Survey (PAndAS) photometric survey from blue main sequence (MS) and MS turn-off stars. We map no fewer than five stellar structures within a heliocentric range of ∼5-30 kpc. Some of these are known (the Monoceros Ring, the Pisces/Triangulum globular cluster stream), but we also uncover three well-defined stellar structures that could be, at least partly, responsible for the so-called Triangulum/Andromeda and Triangulum/Andromeda 2 features. In particular, we trace a new faint stellar stream located at a heliocentric distance of ∼17more » kpc. With a surface brightness of Σ {sub V} ∼ 32-32.5 mag arcsec{sup –2}, it follows an orbit that is almost parallel to the Galactic plane north of M31 and has so far eluded surveys of the MW halo as these tend to steer away from regions dominated by the Galactic disk. Investigating our follow-up spectroscopic observations of PAndAS, we serendipitously uncover a radial velocity signature from stars that have colors and magnitudes compatible with the stream. From the velocity of eight likely member stars, we show that this stellar structure is dynamically cold, with an unresolved velocity dispersion that is lower than 7.1 km s{sup –1} at the 90% confidence level. Along with the width of the stream (300-650 pc), its dynamics point to a dwarf-galaxy-accretion origin. The numerous stellar structures we can map in the MW stellar halo between 5 and 30 kpc and their varying morphology is a testament to the complex nature of the stellar halo at these intermediate distances.« less

A spatially resolving x-ray crystal spectrometer for measurement of ion-temperature and rotation-velocity profiles on the Alcator C-Mod tokamak.

PubMed

Hill, K W; Bitter, M L; Scott, S D; Ince-Cushman, A; Reinke, M; Rice, J E; Beiersdorfer, P; Gu, M-F; Lee, S G; Broennimann, Ch; Eikenberry, E F

2008-10-01

A new spatially resolving x-ray crystal spectrometer capable of measuring continuous spatial profiles of high resolution spectra (lambda/d lambda>6000) of He-like and H-like Ar K alpha lines with good spatial (approximately 1 cm) and temporal (approximately 10 ms) resolutions has been installed on the Alcator C-Mod tokamak. Two spherically bent crystals image the spectra onto four two-dimensional Pilatus II pixel detectors. Tomographic inversion enables inference of local line emissivity, ion temperature (T(i)), and toroidal plasma rotation velocity (upsilon(phi)) from the line Doppler widths and shifts. The data analysis techniques, T(i) and upsilon(phi) profiles, analysis of fusion-neutron background, and predictions of performance on other tokamaks, including ITER, will be presented.

In silico studies to explore the mutagenic ability of 5-halo/oxy/li-oxy-uracil bases with guanine of DNA base pairs.

PubMed

Jana, Kalyanashis; Ganguly, Bishwajit

2014-10-16

DNA nucleobases are reactive in nature and undergo modifications by deamination, oxidation, alkylation, or hydrolysis processes. Many such modified bases are susceptible to mutagenesis when formed in cellular DNA. The mutagenesis can occur by mispairing with DNA nucleobases by a DNA polymerase during replication. We have performed a study of mispairing of DNA bases with unnatural bases computationally. 5-Halo uracils have been studied as mispairs in mutagenesis; however, the reports on their different forms are scarce in the literature. The stability of mispairs with keto form, enol form, and ionized form of 5-halo-uracil has been computed with the M06-2X/6-31+G** level of theory. The enol form of 5-halo-uracil showed remarkable stability toward DNA mispair compared to the corresponding keto and ionized forms. (F)U-G mispair showed the highest stability in the series and (Halo)(U(enol/ionized)-G mispair interactions energies are more stable than the natural G-C basepair of DNA. To enhance the stability of DNA mispairs, we have introduced the hydroxyl group in the place of halogen atoms, which provides additional hydrogen-bonding interactions in the system while forming the 5-membered ring. The study has been further extended with lithiated 5-hydroxymethyl-uracil to stabilize the DNA mispair. (CH2OLi)U(ionized)-G mispair has shown the highest stability (ΔG = -32.4 kcal/mol) with multi O-Li interactions. AIM (atoms in molecules) and EDA (energy decomposition analysis) analysis has been performed to examine the nature of noncovalent interactions in such mispairs. EDA analysis has shown that electrostatic energy mainly contributes toward the interaction energy of mispairs. The higher stability achieved in these studied mispairs can play a pivotal role in the mutagenesis and can help to attain the mutation for many desired biological processes.

From the Primitive Atmosphere to the Prebiotic Soup to the Pre-RNA World

NASA Technical Reports Server (NTRS)

Miller, Stanley L.

1996-01-01

Organic compounds would have been produced in an earth's atmosphere that was reducing. The soup would contain amino and hydroxy acids, together with smaller amounts of purines and pyrimidines. The presence' of sugars is less likely, although they can be produced by the formose reaction from formaldehyde. However, the prebiotic synthesis of RNA has not been demonstrated. One problem is that ribose is not produced selectively over other pentoses and hexoses, except under special conditions. The second problem is that ribose is unstable, with a half-life at pH7 and 100 C of 73 minutes (44 years at 0 C). Other sugars are similarly unstable. Another problem is that there is no efficient prebiotic synthesis of polyphosphates, nor the glycosidic bond of nucleosides. This suggests that there may have been an informational macromolecule that preceded RNA. The RNA world refers to the time when RNA carried both the genetic information and the catalytic activity, and was subsequently converted to the DNA/protein world when protein synthesis began. Preceeding the RNA world was the Pre-RNA world, where a backbone different from ribose phosphate was used, and the bases may have been different from adenine, uracil, guanine and cytosine. We have shown recently that cytosine and uracil can be synthesized efficiently under prebiotic conditions using a dried lagoon model instead of the usual dilute ocean hypothesis. In addition, we have shown that uracil adds formaldehyde efficiently to give 5- hydroxymethyl uracil, which in turn adds various nucleophiles to give uracil analogs of most of the amino acids that occur in proteins. For example, the ammonia, guanidine and imidazole adducts from the analogs of lysine, arginine and histidine. This suggests that the catalytic potential of RNA may have been much more extensive than previously assumed. The major problem is finding out what was the precursor to the ribose phosphate backbone. This will be the key to developing prebiotic self-replicating systems.

A phase II study of preoperative chemoradiation with tegafur-uracil plus leucovorin for locally advanced rectal cancer with pharmacogenetic analysis.

PubMed

Kim, Sun Young; Baek, Ji Yeon; Oh, Jae Hwan; Park, Sung Chan; Sohn, Dae Kyung; Kim, Min Ju; Chang, Hee Jin; Kong, Sun-Young; Kim, Dae Yong

2017-03-27

This study aimed to evaluate the efficacy of a high dose of oral tegafur-uracil (400 mg/m 2 ) plus leucovorin with preoperative chemoradiation of locally advanced rectal cancer and to explore the impact of polymorphisms of cytochrome P 2A6 (CYP2A6), uridine monophosphate synthetase (UMPS), and ATP-binding cassette B1 (ABCB1) on clinical outcome. Patients with cT3 or cT4 rectal cancer were enrolled and were given tegafur-uracil 400 mg/m 2 /day and leucovorin 90 mg/m 2 /day for 7 days a week during preoperative chemoradiation (50.4 Gy/28 fractions) in this phase II trial. Primary endpoint was pathologic complete response rate, and the secondary endpoint was to explore the association between clinical outcomes and genetic polymorphisms CYP2A6 (*4, *7, *9 and *10), UMPS G638C, and three ABCB1 genotypes (C1236T, C3435T, and G2677T). Ninety-one patients were given study treatment, and 90 underwent surgery. Pathologic complete response was noted in 10 patients (11.1%). There was no grade 4 or 5 toxicity; 20 (22.0%) experienced grade 3 toxicities, including diarrhea (10, 11.0%), abdominal pain (2, 2.2%), and anemia (2, 2.2%). Relapse-free survival and overall survival at 5 years were 88.6% and 94.2%, respectively. Patients with the UMPS 638 CC genotype experienced significantly more frequent grade 2 or 3 diarrhea (p for trend = 0.018). Preoperative chemoradiation with tegafur-uracil 400 mg/m 2 /day with leucovorin was feasible, but did not meet the expected pathologic complete response rate. The UMPS 638 CC genotype might be a candidate biomarker predicting toxicity in patients receiving tegafur-uracil/leucovorin-based preoperative chemoradiation for locally advanced rectal cancer. ISRCTN11812525 , registered on 25 July 2016. Retrospectively registered.

VizieR Online Data Catalog: PAndAS view of Andromeda satellites. I. (Martin+, 2013)

NASA Astrophysics Data System (ADS)

Martin, N. F.; Ibata, R. A.; McConnachie, A. W.; Mackey, A. D.; Ferguson, A. M. N.; Irwin, M. J.; Lewis, G. F.; Fardal, M. A.

2015-03-01

The PAndAS survey is a Large Programme of the Canada-France-Hawaii Telescope (CFHT) conducted with the MegaPrime/MegaCam wide-field camera (g and i bands) over the period 2008-2011 (McConnachie et al. 2009Natur.461...66M; A. W. McConnachie et al., in preparation). It builds on a pilot survey of the Andromeda surroundings observed with the same instrument and set up from 2003 until 2008 (Ibata et al. 2007ApJ...671.1591I; McConnachie et al. 2008ApJ...688.1009M). In total, it has a coverage of ~390deg2. (1 data file).

Perseo e Andromeda

NASA Astrophysics Data System (ADS)

Colona, Paolo

2004-08-01

The Perseus-Andromeda group of constellations is the largest in the sky, yet many other Greek myths have no dedicated star at all. The author interprets the importance given to this myth in terms of its role of providing ethnic identify for the Greeks who created it. An accurate analysis of the myth, also including the etymology of the characters' names, shows how it relates to the past encounter between different culture, which are also described. Archaeological research allows us to guess the celestial situation of the epoch when the myth was transposed to the sky. The cultural heritage of the Perseus myth from its origin to the present its outlined.

The Circumgalactic Medium of Andromeda

NASA Astrophysics Data System (ADS)

Lehner, Nicolas; Project AMIGA Team

2017-03-01

Our view of galaxies has been transformed in recent years with diffuse halo gas surrounding galaxies that contains at least as many metals and baryons as their disks. While single sight lines through galaxy halos seen in absorption have provided key new constraints, they provide only average properties. Our massive neighbor, the Andromeda (M31) galaxy, provides an unique way to study its circumgalactic medium whereby we can study it using not one or two, but ~36 sightlines thanks to its proximity. With our Large HST program - Project AMIGA (Absorption Maps In the Gas of Andromeda), our goals are to determine the spatial distribution of the halo properties of a L* galaxy using 36 background targets at different radii and azimuths. In this brief paper, I discuss briefly the scientific rationale of Project AMIGA and some early science results. In particular, for the first time we have demonstrated that M31 has a gaseous halo that extends to R vir with as much as metal and baryonic masses than in its disk and has substantial change in its ionization properties with more highly ionized gas found at R ~ R vir than cooler gas found near the disk.

The PHAT and SPLASH Surveys: Rigorous Structural Decomposition of the Andromeda Galaxy

NASA Astrophysics Data System (ADS)

Dorman, Claire; Guhathakurta, P.; Widrow, L.; Foreman-Mackey, D.; Seth, A.; Dalcanton, J.; Gilbert, K.; Lang, D.; Williams, B. F.; SPLASH Team; PHAT Team

2013-01-01

Traditional surface brightness profile (SBP) based structural decompositions of late-type galaxies into Sersic bulge, exponential disk, and power-law halo are often degenerate in the best-fit profiles. The Andromeda galaxy (M31) is the only large spiral close enough that the relative contributions of the subcomponents can be further constrained via their distinct signatures in resolved stellar population surveys. We make use of two such surveys. The SPLASH program has used the Keck/DEIMOS multiobject spectrograph to measure radial velocities of over 10,000 individual red giant branch stars in the inner 20kpc of M31. The PHAT survey, an ongoing Hubble Space Telescope Multicycle Treasury program, has so far obtained six-filter photometry of over 90 million stars in the same region. We use an MCMC algorithm to simultaneously fit a simple bulge/disk/halo structural model to the SBP, the disk fraction as measured from kinematics, and the PHAT luminosity function. We find that the additional constraints favor a larger bulge than expected from a pure SBP fit. Comparison to galaxy formation models will constrain the formation histories of large spiral galaxies such as the Milky Way and Andromeda.

TriAnd and its siblings: satellites of satellites in the Milky Way halo

NASA Astrophysics Data System (ADS)

Deason, A. J.; Belokurov, V.; Hamren, K. M.; Koposov, S. E.; Gilbert, K. M.; Beaton, R. L.; Dorman, C. E.; Guhathakurta, P.; Majewski, S. R.; Cunningham, E. C.

2014-11-01

We explore the Triangulum-Andromeda (TriAnd) overdensity in the SPLASH (Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo) and SEGUE (the Sloan Extension for Galactic Understanding and Exploration) spectroscopic surveys. Milky Way main-sequence turn-off stars in the SPLASH survey reveal that the TriAnd overdensity and the recently discovered Pan-Andromeda Archaeological Survey (PAndAS) stream share a common heliocentric distance (D ˜ 20 kpc), position on the sky, and line-of-sight velocity (VGSR ˜ 50 km s-1). Similarly, A-type, giant, and main-sequence turn-off stars selected from the SEGUE survey in the vicinity of the Segue 2 satellite show that TriAnd is prevalent in these fields, with a velocity and distance similar to Segue 2. The coincidence of the PAndAS stream and Segue 2 satellite in positional and velocity space to TriAnd suggests that these substructures are all associated, and may be a fossil record of group-infall on to the Milky Way halo. In this scenario, the Segue 2 satellite and PAndAS stream are `satellites of satellites', and the large, metal-rich TriAnd overdensity is the remains of the group central.

Cubs in the Litter: Spectroscopy of New Andromodean Dwarfs from PAndAS

NASA Astrophysics Data System (ADS)

Lewis, Geraint; McConnachie, Alan; Irwin, Michael; Rich, R. Michael; Ibata, Rodrigo

2010-08-01

We will use Gemini/GMOS to obtain spectroscopy of Red Giant Branch (RGB) stars in four new dwarf galaxies identified within the Pan-Andromeda Archaeological Survey (PAndAS). With these data, we will measure the key physical properties of the dwarfs, namely their radial velocities, internal kinematics and spectroscopic metallicities. Such measurements are essential in determining the dwarfs' fundamental characteristics; namely their internal dynamics, dark matter content, and clues to star formation and evolutionary histories. PAndAS is revolutionizing our view of our nearest cosmic neighbour, the Andromeda Galaxy, revealing a wealth of previously undetected substructure and dwarf galaxies, and these new observations are indispensable in unraveling global properties of M31's population of satellites and their relation to the M31 galaxy and its extended stellar halo. Andromeda is one of the few targets available which can provide direct tests of predictions of the distribution of mass and light in galaxy haloes and satellite galaxies, but a detailed knowledge of the physical properties of such substructure is essential; the excellent capabilities of Gemini/GMOS makes it one of the few facilities which can obtain the required spectroscopic data.

The protein phosphatase inhibitor cantharidin induces head and foot formation in buds of Cassiopea andromeda (Rhizostomae, Scyphozoa).

PubMed

Kehls, N E; Herrmann, K; Berking, S

1999-01-01

The polyps of Cassiopea andromeda produce spindle shaped, freely swimming buds which do not develop a head (a mouth opening surrounded by tentacles) and a foot (a sticky plate at the opposite end) until settlement to a suited substrate. The buds, therewith, look very similar to the planula larvae produced in sexual reproduction. With respect to both, buds and planulae, several peptides and the phorbolester TPA have been found to induce the transformation into a polyp. Here it is shown that cantharidin, a serine/threonine protein phosphatase inhibitor, induces head and foot formation in buds very efficiently in a 30 min treatment, the shortest yet known efficient treatment. Some resultant polyps show malformations which indicate that a bud is ordinary polyp tissue in which preparatory steps of head and foot formation mutually block each other from proceeding. Various compounds related to the transfer of methyl groups have been shown to affect head and foot formation in larvae of the hydrozoon Hydractinia echinata. These compounds including methionine, homocysteine, trigonelline, nicotinic acid and cycloleucine are shown to also interfere with the initiation of the processes which finally lead to head and foot formation in buds of Cassiopea andromeda.

ANDROMEDA XXIX: A NEW DWARF SPHEROIDAL GALAXY 200 kpc FROM ANDROMEDA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bell, Eric F.; Slater, Colin T.; Martin, Nicolas F.

We report the discovery of a new dwarf galaxy, Andromeda XXIX (And XXIX), using data from the recently released Sloan Digital Sky Survey Data Release 8, and confirmed by Gemini North telescope Multi-Object Spectrograph imaging data. And XXIX appears to be a dwarf spheroidal galaxy, separated on the sky by a little more than 15 Degree-Sign from M31, with a distance inferred from the tip of the red giant branch of 730 {+-} 75 kpc, corresponding to a three-dimensional separation from M31 of 207{sup +20}{sub -2} kpc (close to M31's virial radius). Its absolute magnitude, as determined by comparison tomore » the red giant branch luminosity function of the Draco dwarf spheroidal, is M{sub V} = -8.3 {+-} 0.4. And XXIX's stellar populations appear very similar to Draco's; consequently, we estimate a metallicity for And XXIX of [Fe/H] {approx}-1.8. The half-light radius of And XXIX is 360 {+-} 60 pc and its ellipticity is 0.35 {+-} 0.06, typical of dwarf satellites of the Milky Way and M31 at this absolute magnitude range.« less

Chemical Fate of a Metamorphic Inducer in Larvae-like Buds of the Cnidarian Cassiopea andromeda.

PubMed

Fleck, J

1998-02-01

Larvae-like vegetative buds of the scyphozoan Cassiopea andromeda metamorphose into polyps in the presence of oligopeptides that have a well-defined primary structure. Buds were incubated with the hexapeptide 14C-dansyl-GPGGPA, a representative inducer. Autoradiography of longitudinal sections of these buds revealed rapid internalization of peptide by the buds. Silver grain density was highest in the pre-pedal disc region (or aboral knob) of metamorphosing buds. Larvae and buds sporadically explore their habitat with this aboral knob, searching for a suitable solid substrate to which irreversible attachment will be made. Buds were incubated for 3, 8, or 16 h with 14C-dansyl-GPGGPA, then homogenized and the supernatants analyzed to determine the chemical fate of the inducer. The signal molecule was shown to be partly degraded to 14C-dansyl-GP, partly to 14C-dansyl-G, and in part still present in its original structure. These cleavage products were also found in the surrounding medium after an incubation time of 8 h with 14C-dansyl-GPGGPA, but did not induce metamorphosis. This study suggests that exposure of metamorphosis-inducing peptides to buds of Cassiopea andromeda results in signal termination.

Andromeda's SMBH Projected Accretion Rate

NASA Astrophysics Data System (ADS)

Wilson, John

2014-03-01

A formula for calculating the half-life of galaxy clusters is proposed. A galactic half-life is the estimated amount of time that the most massive supermassive black hole (SMBH) in the galaxy cluster will have accreted one half of the mass in the cluster. The calculation is based on a projection of the SMBH continuing its exponentially decreasing rate of accretion that it had in its first 13 billion years. The calculated half-life for the Andromeda SMBH is approximately 1.4327e14 years from the Big Bang. Several proposals have suggested that black holes could be significant factors in the formation of new universes. Part of the verification or falsification of this hypothesis could be done by an N-body simulation. These simulations require an enormous amount of computer power and time. Some plausible projection of the growth of the supermassive black hole is needed to prepare an N-body simulation budget proposal. For now, this method provides an estimate for the growth rate of the Andromeda SMBH and deposition of the outcome of most of the galaxy cluster's mass which is either accreted by the SMBH, lost by ejection from the cluster, or lost in the form of energy.

History of Chandra X-Ray Observatory

NASA Image and Video Library

1999-10-13

Chandra X-Ray Observatory took this first x-ray picture of the Andromeda Galaxy (M31) on October 13, 1999. The blue dot in the center of the image is a "cool" million-degree x-ray source where a supermassive black hole with the mass of 30-million suns is located. The x-rays are produced by matter furneling toward the black hole. Numerous other hotter x-ray sources are also apparent. Most of these are probably due to x-ray binary systems, in which a neutron star or black hole is in close orbit around a normal star. While the gas falling into the central black hole is cool, it is only cool by comparison to the 100 other x-ray sources in the Andromeda Galaxy. To be detected by an x-ray telescope, the gas must have a temperature of more than a million degrees. The Andromeda Galaxy is our nearest neighbor spiral galaxy at a distance of two million light years. It is similar to our own Milky Way in size, shape, and also contains a supermassive black hole at the center. (Photo Credit: NASA/CXC/SAO/S. Murray, M. Garcia)

Observational Evidence for a Dark Side to NGC 5128's Globular Cluster System

NASA Astrophysics Data System (ADS)

Taylor, Matthew A.; Puzia, Thomas H.; Gomez, Matias; Woodley, Kristin A.

2015-05-01

We present a study of the dynamical properties of 125 compact stellar systems (CSSs) in the nearby giant elliptical galaxy NGC 5128, using high-resolution spectra (R ≈ 26, 000) obtained with Very Large Telescope/FLAMES. Our results provide evidence for a new type of star cluster, based on the CSS dynamical mass scaling relations. All radial velocity (vr) and line-of-sight velocity dispersion (σlos) measurements are performed with the penalized pixel fitting (ppxf ) technique, which provided σppxf estimates for 115 targets. The σppxf estimates are corrected to the 2D projected half-light radii, σ1/2, as well as the cluster cores, σ0, accounting for observational/aperture effects and are combined with structural parameters, from high spatial resolution imaging, in order to derive total dynamical masses ({{M}dyn}) for 112 members of NGC 5128’s star cluster system. In total, 89 CSSs have dynamical masses measured for the first time along with the corresponding dynamical mass-to-light ratios (\\Upsilon Vdyn). We find two distinct sequences in the \\Upsilon Vdyn-{{M}dyn} plane, which are well approximated by power laws of the forms \\Upsilon Vdyn\\propto Mdyn0.33+/- 0.04 and \\Upsilon Vdyn\\propto Mdyn0.79+/- 0.04. The shallower sequence corresponds to the very bright tail of the globular cluster luminosity function (GCLF), while the steeper relation appears to be populated by a distinct group of objects that require significant dark gravitating components such as central massive black holes and/or exotically concentrated dark matter distributions. This result would suggest that the formation and evolution of these CSSs are markedly different from the “classical” globular clusters in NGC 5128 and the Local Group, despite the fact that these clusters have luminosities similar to the GCLF turnover magnitude. We include a thorough discussion of myriad factors potentially influencing our measurements. Based on observations collected under program 081.D-0651 (PI: Matias Gomez) with FLAMES at the Very Large Telescope of the Paranal Observatory in Chile, operated by the ESO.

Dietary nucleotides prevent decrease in cellular immunity in ground-based microgravity analog

NASA Technical Reports Server (NTRS)

Yamauchi, Keiko; Hales, Nathan W.; Robinson, Sandra M.; Niehoff, Michael L.; Ramesh, Vani; Pellis, Neal R.; Kulkarni, Anil D.

2002-01-01

Microgravity and stress of spaceflights result in immune dysfunction. The role of nutrition, especially nucleotide supplementation, has become an area of intensive research and significant interest in immunomodulation for maintenance of cellular immune responses. The studies presented here evaluate the plausibility of administering nucleotides to obviate immune dysfunction in an Earth-based in vivo analog of microgravity as studied in anti-orthostatic tail suspension (AOS) of mice. Mice were divided into three housing groups: group, isolation, and AOS. Mice were fed either control chow diet (CD), or RNA-, adenine-, or uracil-supplemented CD for the 1-wk duration of the experiments. In AOS mice, supplemental nucleotides significantly increased in vivo lymph node proliferation and ex vivo lymphoproliferation response to alloantigen and mitogens, respectively, and interleukin-2 and interferon-gamma production. A lower corticosterone level was observed in uracil-supplemented CD compared with CD. These results suggest that exogenous nucleotide supplementation, especially uracil, of normal diet is beneficial in the maintenance and restoration of the immune response during the microgravity analog conditions.

The Methanothermobacter thermautotrophicus ExoIII homologue Mth212 is a DNA uridine endonuclease

PubMed Central

Georg, Jens; Schomacher, Lars; Chong, James P. J.; Majerník, Alan I.; Raabe, Monika; Urlaub, Henning; Müller, Sabine; Ciirdaeva, Elena; Kramer, Wilfried; Fritz, Hans-Joachim

2006-01-01

The genome of Methanothermobacter thermautotrophicus, as a hitherto unique case, is apparently devoid of genes coding for general uracil DNA glycosylases, the universal mediators of base excision repair following hydrolytic deamination of DNA cytosine residues. We have now identified protein Mth212, a member of the ExoIII family of nucleases, as a possible initiator of DNA uracil repair in this organism. This enzyme, in addition to bearing all the enzymological hallmarks of an ExoIII homologue, is a DNA uridine endonuclease (U-endo) that nicks double-stranded DNA at the 5′-side of a 2′-d-uridine residue, irrespective of the nature of the opposing nucleotide. This type of activity has not been described before; it is absent from the ExoIII homologues of Escherichia coli, Homo sapiens and Methanosarcina mazei, all of which are equipped with uracil DNA repair glycosylases. The U-endo activity of Mth212 is served by the same catalytic center as its AP-endo activity. PMID:17012282

Exploration of acetanilide derivatives of 1-(ω-phenoxyalkyl)uracils as novel inhibitors of Hepatitis C Virus replication

PubMed Central

Magri, Andrea; Ozerov, Alexander A.; Tunitskaya, Vera L.; Valuev-Elliston, Vladimir T.; Wahid, Ahmed; Pirisi, Mario; Simmonds, Peter; Ivanov, Alexander V.; Novikov, Mikhail S.; Patel, Arvind H.

2016-01-01

Hepatitis C Virus (HCV) is a major public health problem worldwide. While highly efficacious directly-acting antiviral agents have been developed in recent years, their high costs and relative inaccessibility make their use limited. Here, we describe new 1-(ω-phenoxyalkyl)uracils bearing acetanilide fragment in 3 position of pyrimidine ring as potential antiviral drugs against HCV. Using a combination of various biochemical assays and in vitro virus infection and replication models, we show that our compounds are able to significantly reduce viral genomic replication, independently of virus genotype, with their IC50 values in the nanomolar range. We also demonstrate that our compounds can block de novo RNA synthesis and that effect is dependent on a chemical structure of the compounds. A detailed structure-activity relationship revealed that the most active compounds were the N3-substituted uracil derivatives containing 6-(4-bromophenoxy)hexyl or 8-(4-bromophenoxy)octyl fragment at N1 position. PMID:27406141

Exploration of acetanilide derivatives of 1-(ω-phenoxyalkyl)uracils as novel inhibitors of Hepatitis C Virus replication.

PubMed

Magri, Andrea; Ozerov, Alexander A; Tunitskaya, Vera L; Valuev-Elliston, Vladimir T; Wahid, Ahmed; Pirisi, Mario; Simmonds, Peter; Ivanov, Alexander V; Novikov, Mikhail S; Patel, Arvind H

2016-07-12

Hepatitis C Virus (HCV) is a major public health problem worldwide. While highly efficacious directly-acting antiviral agents have been developed in recent years, their high costs and relative inaccessibility make their use limited. Here, we describe new 1-(ω-phenoxyalkyl)uracils bearing acetanilide fragment in 3 position of pyrimidine ring as potential antiviral drugs against HCV. Using a combination of various biochemical assays and in vitro virus infection and replication models, we show that our compounds are able to significantly reduce viral genomic replication, independently of virus genotype, with their IC50 values in the nanomolar range. We also demonstrate that our compounds can block de novo RNA synthesis and that effect is dependent on a chemical structure of the compounds. A detailed structure-activity relationship revealed that the most active compounds were the N(3)-substituted uracil derivatives containing 6-(4-bromophenoxy)hexyl or 8-(4-bromophenoxy)octyl fragment at N(1) position.

Nutrition beyond nutrition: plausibility of immunotrophic nutrition for space travel.

PubMed

Kulkarni, A D; Yamauchi, K; Hales, N W; Ramesh, V; Ramesh, G T; Sundaresan, A; Andrassy, R J; Pellis, N R

2002-06-01

Microgravity has adverse effects on the immune system. We examined the effects of supplemental dietary nucleotides on immune function in ground-based in vivo anti-orthostatic tail-suspended (AOS) mice and in vitro (bioreactor-BIO) analogs of microgravity. BALB/c mice were divided into the following three groups: group housed, single isolation, and AOS. Mice were fed either control chow or chow supplemented with RNA or uracil. Immune function was assessed by in vivo popliteal lymph node proliferation (PLN), in vitro PHA-stimulated proliferation of splenocytes and cytokine production. BIO splenocytes were cultured in vitro with/without PHA, a nucleoside-nucleotide mixture (NS/NT) or uridine. The cell proliferation and scanning electron microscopic examination for cells were carried out. PLN response was significantly suppressed in AOS mice (P<0.05) and was restored by RNA and uracil diets. Splenocytes from AOS mice had decreased phytohemagglutinin (PHA)-stimulated proliferation, decreased IL-2 and IFN-gamma cytokine levels (P<0.05). These responses were restored by RNA and uracil diets. In BIO cultures, PHA response was suppressed significantly, and uridine and NS/NT restored the proliferative responses. Scanning electron microscopic analysis of cells cultured in BIO revealed cells with pinched, distorted and eroded membranes. Nucleotide supplementation especially uridine restored normal activated cell surface appearance and ruffling. In the microgravity analog environment of AOS and BIO, supplemental nucleotides and especially uracil/uridine have up-regulating and immunoprotective effects with potential as a countermeasure to the observed immune dysfunction in true microgravity.

Retrospective analysis of an oral combination of dexamethasone, uracil plus tegafur and cyclophosphamide for hormone-refractory prostate cancer.

PubMed

Hatano, Koji; Nonomura, Norio; Nishimura, Kazuo; Kawashima, Atsunari; Mukai, Masatoshi; Nagahara, Akira; Nakai, Yasutomo; Nakayama, Masashi; Takayama, Hitoshi; Tsujimura, Akira; Okuyama, Akihiko

2011-02-01

To evaluate the clinical utility of an oral combination of dexamethasone, uracil plus tegafur and cyclophosphamide as a treatment for patients with hormone-refractory prostate cancer. Fifty-seven patients with hormone-refractory prostate cancer were treated with an oral administration of dexamethasone (1.0 mg/day), uracil plus tegafur (400 mg/day) and cyclophosphamide (100 mg/day). The median patient age was 71 years. Sixteen patients had symptomatic bone metastasis, 31 had asymptomatic bone metastasis and 8 showed lymph node metastasis. Eight patients presented with only biochemical progression as evaluated by serum prostate-specific antigen levels. Thirty-six (63%) of 57 patients demonstrated a ≥50% decline in serum prostate-specific antigen levels. The median time to prostate-specific antigen progression was 7.2 months. In patients with a prostate-specific antigen decline of ≥50%, the median time to progression was 13.3 months. With respect to pre-treatment markers, the duration of response to initial hormonal treatment was associated with the time to prostate-specific antigen progression. In 11 of 16 (69%) patients who complained of bone pain, the pain improved and became stable in 5 of those patients (31%). Most adverse events were mild and only three (5%) patients showed neutropenia of Grade 3 or higher. The combination of dexamethasone, uracil plus tegafur and cyclophosphamide is an effective and well tolerated regimen for hormone-refractory prostate cancer. To evaluate the survival benefits, further randomized studies are required.

The transport and metabolism of the uridine mononucleotides by rat jejunum in vitro.

PubMed Central

Bronk, J R; Hastewell, J G

1989-01-01

1. Both uridine 3'-monophosphate (3'-UMP) and uridine 5'-monophosphate (5'-UMP) when perfused through the lumen of isolated rat jejunum gave rise to uracil as the only transported pyrimidine appearing in the serosal medium; neither the nucleotide nor the nucleoside could be detected in the serosal fluid. 2. There was a low level of the nucleoside, uridine, in the luminal fluid after the nucleotide had passed through the jejunal segment. Luminal nucleoside appearance was more marked from the 3' form of the nucleotide. 3. The hydrolysis of the nucleotides to the nucleoside form occurred via a brush-border membrane enzyme, which had the same maximal velocity (Vmax) for the two nucleotides (699 +/- 35 and 747 +/- 10 nmol min-1 (mg protein)-1 for 3'-UMP and 5'-UMP, respectively) but a different Michaelis constant (Km) so that 3'-UMP (Km = 58 +/- 3 microM) hydrolysis is favoured over 5'-UMP hydrolysis (Km = 108 +/- microM) at lower concentrations. 4. At 0.05 mM, luminal 3'-UMP gave rise to a higher rate of serosal uracil appearance than luminal 5'-UMP, but at higher luminal concentrations (0.1-0.2 mM) the rate of serosal uracil appearance was the same from both nucleotides. 5. The transmural transport of uracil from the uridine mononucleotides is discussed with reference to the metabolism and compartmentalization of the small intestine responsible for the appearance of the free pyrimidine in the serosal fluid. PMID:2778724

Theory of plasma contactors in ground-based experiments and low Earth orbit

NASA Technical Reports Server (NTRS)

Gerver, M. J.; Hastings, Daniel E.; Oberhardt, M. R.

1990-01-01

Previous theoretical work on plasma contactors as current collectors has fallen into two categories: collisionless double layer theory (describing space charge limited contactor clouds) and collisional quasineutral theory. Ground based experiments at low current are well explained by double layer theory, but this theory does not scale well to power generation by electrodynamic tethers in space, since very high anode potentials are needed to draw a substantial ambient electron current across the magnetic field in the absence of collisions (or effective collisions due to turbulence). Isotropic quasineutral models of contactor clouds, extending over a region where the effective collision frequency upsilon sub e exceeds the electron cyclotron frequency omega sub ce, have low anode potentials, but would collect very little ambient electron current, much less than the emitted ion current. A new model is presented, for an anisotropic contactor cloud oriented along the magnetic field, with upsilon sub e less than omega sub ce. The electron motion along the magnetic field is nearly collisionless, forming double layers in that direction, while across the magnetic field the electrons diffuse collisionally and the potential profile is determined by quasineutrality. Using a simplified expression for upsilon sub e due to ion acoustic turbulence, an analytic solution has been found for this model, which should be applicable to current collection in space. The anode potential is low and the collected ambient electron current can be several times the emitted ion current.

Biological evaluation of some uracil derivatives as potent glutathione reductase inhibitors

NASA Astrophysics Data System (ADS)

Güney, Murat; Ekinci, Deniz; Ćavdar, Huseyin; Şentürk, Murat; Zilbeyaz, Kani

2016-04-01

Discovery of glutathione reductase (GR) inhibitors has become very popular recently due to antimalarial and anticancer activities. In this study, GR inhibitory capacities of some uracil derivatives (UDCs) (1-4) were reported. Some commercially available molecules (5-6) were also tested for comparison reasons. The novel UDCs were obtained in high yields using simple chemical procedures and exhibited much potent inhibitory activities against GR at low nanomolar concentrations with IC50 values ranging from 2.68 to 166.6 nM as compared with well-known agents.

ANDROMEDA DWARFS IN LIGHT OF MOND. II. TESTING PRIOR PREDICTIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGaugh, Stacy; Milgrom, Mordehai

We employ recently published measurements of the velocity dispersions in the newly discovered dwarf satellite galaxies of Andromeda to test our previously published predictions of this quantity. The data are in good agreement with our specific predictions for each dwarf made a priori with modified Newtonian dynamics (MOND), with reasonable stellar mass-to-light ratios, and no dark matter, while Newtonian dynamics point to quite large mass discrepancies in these systems. MOND distinguishes between regimes where the internal field of the dwarf, or the external field of the host, dominates. The data appear to recognize this distinction, which is a unique featuremore » of MOND not explicable in ΛCDM.« less

On the long term evolution of white dwarfs in cataclysmic variables and their recurrence times

NASA Technical Reports Server (NTRS)

Sion, E. M.; Starrfield, S. G.

1985-01-01

The relevance of the long term quasi-static evolution of accreting white dwarfs to the outbursts of Z Andromeda-like symbiotics; the masses and accretion rates of classical nova white dwarfs; and the observed properties of white dwarfs detected optically and with IUE in low M dot cataclysmic variables is discussed. A surface luminosity versus time plot for a massive, hot white dwarf bears a remarkable similarity to the outburst behavior of the hot blue source in Z Andromeda. The long term quasi-static models of hot accreting white dwarfs provide convenient constraints on the theoretically permissible parameters to give a dynamical (nova-like) outburst of classic white dwarfs.

The doubling of stellar black hole nuclei

NASA Astrophysics Data System (ADS)

Kazandjian, Mher V.; Touma, J. R.

2013-04-01

It is strongly believed that Andromeda's double nucleus signals a disc of stars revolving around its central supermassive black hole on eccentric Keplerian orbits with nearly aligned apsides. A self-consistent stellar dynamical origin for such apparently long-lived alignment has so far been lacking, with indications that cluster self-gravity is capable of sustaining such lopsided configurations if and when stimulated by external perturbations. Here, we present results of N-body simulations which show unstable counter-rotating stellar clusters around supermassive black holes saturating into uniformly precessing lopsided nuclei. The double nucleus in our featured experiment decomposes naturally into a thick eccentric disc of apo-apse aligned stars which is embedded in a lighter triaxial cluster. The eccentric disc reproduces key features of Keplerian disc models of Andromeda's double nucleus; the triaxial cluster has a distinctive kinematic signature which is evident in Hubble Space Telescope observations of Andromeda's double nucleus, and has been difficult to reproduce with Keplerian discs alone. Our simulations demonstrate how the combination of an eccentric disc and a triaxial cluster arises naturally when a star cluster accreted over a preexisting and counter-rotating disc of stars drives disc and cluster into a mutually destabilizing dance. Such accretion events are inherent to standard galaxy formation scenarios. They are here shown to double stellar black hole nuclei as they feed them.

A vast, thin plane of corotating dwarf galaxies orbiting the Andromeda galaxy.

PubMed

Ibata, Rodrigo A; Lewis, Geraint F; Conn, Anthony R; Irwin, Michael J; McConnachie, Alan W; Chapman, Scott C; Collins, Michelle L; Fardal, Mark; Ferguson, Annette M N; Ibata, Neil G; Mackey, A Dougal; Martin, Nicolas F; Navarro, Julio; Rich, R Michael; Valls-Gabaud, David; Widrow, Lawrence M

2013-01-03

Dwarf satellite galaxies are thought to be the remnants of the population of primordial structures that coalesced to form giant galaxies like the Milky Way. It has previously been suspected that dwarf galaxies may not be isotropically distributed around our Galaxy, because several are correlated with streams of H I emission, and may form coplanar groups. These suspicions are supported by recent analyses. It has been claimed that the apparently planar distribution of satellites is not predicted within standard cosmology, and cannot simply represent a memory of past coherent accretion. However, other studies dispute this conclusion. Here we report the existence of a planar subgroup of satellites in the Andromeda galaxy (M 31), comprising about half of the population. The structure is at least 400 kiloparsecs in diameter, but also extremely thin, with a perpendicular scatter of less than 14.1 kiloparsecs. Radial velocity measurements reveal that the satellites in this structure have the same sense of rotation about their host. This shows conclusively that substantial numbers of dwarf satellite galaxies share the same dynamical orbital properties and direction of angular momentum. Intriguingly, the plane we identify is approximately aligned with the pole of the Milky Way's disk and with the vector between the Milky Way and Andromeda.

Getting to Know the Neighbors: Deep Imaging of the Andromeda Satellite Dwarf Galaxy Cassiopeia III with WIYN pODI

NASA Astrophysics Data System (ADS)

Smith, Madison; Rhode, Katherine L.; Janowiecki, Steven

2016-01-01

We present results from WIYN pODI imaging of Cassiopeia III/Andromeda XXXII (Cas III/And XXXII), an Andromeda satellite dwarf galaxy recently discovered by Martin et al. (2013) in Pan-STARRS1 survey data. Detailed studies of satellite dwarf galaxies in the Local Group and its environs provide important insight into how low-mass galaxies form and evolve as well as how more massive galaxies are assembled in a hierarchical universe. The goal of this project is to obtain deep, wide-field photometry of Cas III in order to study its stellar population in more detail. The images used for this analysis were taken in October 2013 with the 24' x 24' pODI camera on the WIYN 3.5-m telescope in the SDSS g and i filters. Calibrated photometry was performed on all point sources in the g and i images and then used to quantify the radial distribution of stars in Cas III and to construct a color-magnitude diagram (CMD). We present this CMD along with a map of the resolved stellar population and measurements of the galaxy magnitude and structural properties. This research was supported by the NSF Research Experiences for Undergraduates program (grant number AST-1358980).

The Crystal Structure of Streptococcus pyogenes Uridine Phosphorylase Reveals a Distinct Subfamily of Nucleoside Phosphorylases

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tran, Timothy H.; Christoffersen, S.; Allan, Paula W.

2011-09-20

Uridine phosphorylase (UP), a key enzyme in the pyrimidine salvage pathway, catalyzes the reversible phosphorolysis of uridine or 2'-deoxyuridine to uracil and ribose 1-phosphate or 2'-deoxyribose 1-phosphate. This enzyme belongs to the nucleoside phosphorylase I superfamily whose members show diverse specificity for nucleoside substrates. Phylogenetic analysis shows Streptococcus pyogenes uridine phosphorylase (SpUP) is found in a distinct branch of the pyrimidine subfamily of nucleoside phosphorylases. To further characterize SpUP, we determined the crystal structure in complex with the products, ribose 1-phosphate and uracil, at 1.8 {angstrom} resolution. Like Escherichia coli UP (EcUP), the biological unit of SpUP is a hexamermore » with an ?/? monomeric fold. A novel feature of the active site is the presence of His169, which structurally aligns with Arg168 of the EcUP structure. A second active site residue, Lys162, is not present in previously determined UP structures and interacts with O2 of uracil. Biochemical studies of wild-type SpUP showed that its substrate specificity is similar to that of EcUP, while EcUP is {approx}7-fold more efficient than SpUP. Biochemical studies of SpUP mutants showed that mutations of His169 reduced activity, while mutation of Lys162 abolished all activity, suggesting that the negative charge in the transition state resides mostly on uracil O2. This is in contrast to EcUP for which transition state stabilization occurs mostly at O4.« less

Probing the interaction of archaeal DNA polymerases with deaminated bases using X-ray crystallography and non-hydrogen bonding isosteric base analogues.

PubMed

Killelea, Tom; Ghosh, Samantak; Tan, Samuel S; Heslop, Pauline; Firbank, Susan J; Kool, Eric T; Connolly, Bernard A

2010-07-13

Archaeal family-B DNA polymerases stall replication on encountering the pro-mutagenic bases uracil and hypoxanthine. This publication describes an X-ray crystal structure of Thermococcus gorgonarius polymerase in complex with a DNA containing hypoxanthine in the single-stranded region of the template, two bases ahead of the primer-template junction. Full details of the specific recognition of hypoxanthine are revealed, allowing a comparison with published data that describe uracil binding. The two bases are recognized by the same pocket, in the N-terminal domain, and make very similar protein-DNA interactions. Specificity for hypoxanthine (and uracil) arises from a combination of polymerase-base hydrogen bonds and shape fit between the deaminated bases and the pocket. The structure with hypoxanthine at position 2 explains the stimulation of the polymerase 3'-5' proofreading exonuclease, observed with deaminated bases at this location. A beta-hairpin element, involved in partitioning the primer strand between the polymerase and exonuclease active sites, inserts between the two template bases at the extreme end of the double-stranded DNA. This denatures the two complementary primer bases and directs the resulting 3' single-stranded extension toward the exonuclease active site. Finally, the relative importance of hydrogen bonding and shape fit in determining selectivity for deaminated bases has been examined using nonpolar isosteres. Affinity for both 2,4-difluorobenzene and fluorobenzimidazole, non-hydrogen bonding shape mimics of uracil and hypoxanthine, respectively, is strongly diminished, suggesting polar protein-base contacts are important. However, residual interaction with 2,4-difluorobenzene is seen, confirming a role for shape recognition.

Experimental study of two separating turbulent boundary layers

NASA Technical Reports Server (NTRS)

Nagabushana, K. A.; Simpson, R. L.; Agarwal, N. K.

1987-01-01

A detailed study of two strong adverse pressure gradient flows, one with a free-stream velocity of 35 m/sec, at throat (producing a Re sub theta of 27000 at detachment) and another with free-stream velocity of 22 m/sec, at throat (producing a Re sub theta of 19000 at detachment) is presented. In these examples flows separate slowly and reattach very rapidly over a very short distance in a streamwise direction. In the backflow region, there appears to be a semi-logarithmically flat region in the streamwise fluctuating velocity component, u', which spreads over a definite range of y/delta. In power spectra, the flow variables phi sub upsilon upsilon (kappa sub 1 delta)/ -uv bar sub max vs. kappa sub 1 delta forms a unique set of scaling parameters for adverse pressure gradient flows. Experimental results show good agreement with previous studies.

Neutrino degeneracy and cosmological nucleosynthesis, revisited

NASA Technical Reports Server (NTRS)

Olive, K. A.; Schramm, David N.; Thomas, D.; Walker, T. P.

1991-01-01

A reexamination of the effects of non-zero degeneracies on Big Bang Nucleosynthesis is made. As previously noted, non-trivial alterations of the standard model conclusions can be induced only if excess lepton numbers L sub i, comparable to photon number densities eta sub tau, are assumed (where eta sub tau is approx. 3 times 10(exp 9) eta sub b). Furthermore, the required lepton number densities (L sub i eta sub tau) must be different for upsilon sub e than for upsilon sub mu and epsilon sub tau. It is shown that this loophole in the standard model of nucleosynthesis is robust and will not vanish as abundance and reaction rate determinations improve. However, it is also argued that theoretically (L sub e) approx. (L sub mu) approx. (L sub tau) approx. eta sub b is much less than eta sub tau which would preclude this loophole in standard unified models.

A Measurement of the Charged and Neutral B Meson Lifetimes Using Fully Reconstructed Decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barrera, Barbara

Data collected with the BABAR detector at the PEP-II asymmetric B Factory at SLAC are used to study the lifetimes of the B{sup 0} and B{sup +} mesons. The data sample consists of 7.4 fb{sup -1} collected near the {Upsilon}(4S) resonance. B{sup 0} and B{sup +} mesons are fully reconstructed in several exclusive hadronic decay modes to charm and charmonium final states. The B lifetimes are determined from the flight length difference between the two B mesons which are pair-produced in the {Upsilon}(4S) decay. The preliminary measurements of the lifetimes are {tau}B{sup 0} = 1.506 {+-} 0.052 (stat) {+-} 0.029more » (syst) ps, {tau}B{sup +} = 1.602 {+-} 0.049 (stat) {+-} 0.035 (syst) ps, and of their ratio is {tau}B{sup +}/{tau}B{sup 0} = 1.065 {+-} 0.044 (stat) {+-} 0.021 (syst).« less

A Measurement of the Charged and Neutral B Meson Lifetimes Using Fully Reconstructed Decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barrera, Barbara

Data collected with the BABAR detector at the PEP-II asymmetric B Factory at SLAC are used to study the lifetimes of the B{sup 0} and B{sup +} mesons. The data sample consists of 7.4 fb{sup {minus}1} collected near the Upsilon(4S) resonance. B{sup 0} and B{sup +} mesons are fully reconstructed in several exclusive hadronic decay modes to charm and charmonium final states. The B lifetimes are determined from the flight length difference between the two B mesons which are pair-produced in the Upsilon(4S) decay. The preliminary measurements of the lifetimes are tau{sub B0} = 1.506 {+-} 0.052 (stat) {+-} 0.029more » (syst) ps, tau{sub B+} = 1.602 {+-} 0.049 (stat) {+-} 0.035 (syst) ps, and of their ratio is tau{sub B+}/tau{sub B0} = 1.065 {+-} 0.044 (stat) {+-} 0.021 (syst).« less

Life in the Outer Limits: Insight into Hierarchical Merging from the Outermost Structure of the Andromeda Stellar Halo

NASA Astrophysics Data System (ADS)

Beaton, Rachael; Majewski, S. R.; Patterson, R. J.; Guhathakurta, P.; Gilbert, K.; Kalirai, J. S.; Tollerud, E. J.; SPLASH Team

2014-01-01

Owing to their large dynamical timescales, the stellar haloes of Milky Way (MW) sized galaxies represent ideal environments to test modern theories of galaxy formation in the Lambda-CDM paradigm. Only in stellar haloes can the remnants of hierarchical accretion be preserved over long timescales as in-tact dwarf satellites or as tidal debris and can be easily distinguished from the underlying smooth structure. Stellar haloes, however, remain some of the most difficult galactic structures to constrain due to their large angular extent and extremely low surface brightness. Thus, the basic properties of stellar haloes -- the overall stellar distribution, substructure fraction, global kinematics and detailed stellar content -- remained relatively unconstrained. In this thesis, we present several projects designed to understand the current structure and the the formation of the Andromeda (M31) stellar halo, the only stellar halo -- besides our own -- that is within reach of current ground based facilities on the large scale required to constrain the basic properties of stellar haloes. First, we describe a seven season imaging campaign comprising the backbone of the Spectroscopic and Photometric Landscape of the Andromeda Stellar Halo (SPLASH) program. This survey is unique in its application of the Washington + DDO51 filter system to select individual M31 RGB stars without spectroscopic follow up. Second, we use the SPLASH photometric survey to identify sample of halo stars at projected radii of 120 kpc, for which we have obtained spectroscopic follow-up. Third, we add this large radius sample to the existing spectroscopic results from SPLASH, and use this unique sample to explore the stellar kinematics of the halo at large radii with full azimuthal coverage. Lastly, we preview on-going work to constrain the formation of the Andromeda stellar halo, using both in-tact satellites and resolved M31 halo members as tracers of its accretion history.

An Insight into the Environmental Effects of the Pocket of the Active Site of the Enzyme. Ab initio ONIOM-Molecular Dynamics (MD) Study on Cytosine Deaminase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsubara, Toshiaki; Dupuis, Michel; Aida, Misako

2008-02-01

We applied the ONIOM-molecular dynamics (MD) method to cytosine deaminase to examine the environmental effects of the amino acid residues in the pocket of the active site on the substrate taking account of their thermal motion. The ab initio ONIOM-MD simulations show that the substrate uracil is strongly perturbed by the amino acid residue Ile33, which sandwiches the uracil with His62, through the steric contact due to the thermal motion. As a result, the magnitude of the thermal oscillation of the potential energy and structure of the substrate uracil significantly increases. TM and MA were partly supported by grants frommore » the Ministry of Education, Culture, Sports, Science and Technology of Japan.MD was supported by the Division of Chemical Sciences, Office of Basic Energy Sciences, and by the Office of Biological and Environmental Research of the U.S. Department of Energy DOE. Battelle operates Pacific Northwest National Laboratory for DOE.« less

In Situ Biodosimetric Experiment for Space Applications

NASA Astrophysics Data System (ADS)

Goldschmidt, Gergely; Kovaliczky, Éva; Szabó, József; Rontó, Györgyi; Bérces, Attila

2012-06-01

This paper presents the principles and application of DNA based biological UV dosimeters, as developed by Research Group for Biophysics (RGB). These dosimeters are used for assessing the biological hazard of living systems on the Earth's surface and in different waters (rivers, lakes, seas, etc.). The UV dosimetry system has also been used in the space. In dosimeters a bacterial virus, bacteriophage T7 and polycrystalline uracil thin layers have been used as biological detectors. On the Earth's surface the UV radiation induces dimer formation in phage T7 and in the uracil detector, which was evaluated by loss of viability of the phage particles and by the decrease of the characteristic optical density (OD) of uracil thin layers. Recently the development of human space activities has also increased the need to measure the biological effect of extraterrestrial solar radiation, too. The evaluation of the space samples occurred on ground, thus only the starting and the final state were taken into account. A new improved, automated method is presented below which makes data collection more efficient and also makes the dynamics of the process observable.

Interacting Winds in Eclipsing Symbiotic Systems - The Case Study of EG Andromedae

NASA Astrophysics Data System (ADS)

Calabrò, Emanuele

2014-03-01

We report the mathematical representation of the so called eccentric eclipse model, whose numerical solutions can be used to obtain the physical parameters of a quiescent eclipsing symbiotic system. Indeed the nebular region produced by the collision of the stellar winds should be shifted to the orbital axis because of the orbital motion of the system. This mechanism is not negligible, and it led us to modify the classical concept of an eclipse. The orbital elements obtained from spectroscopy and photometry of the symbiotic EG Andromedae were used to test the eccentric eclipse model. Consistent values for the unknown orbital elements of this symbiotic were obtained. The physical parameters are in agreement with those obtained by means of other simulations for this system.

VizieR Online Data Catalog: PAndAS view of Andromeda satellites. II. (Martin+, 2016)

NASA Astrophysics Data System (ADS)

Martin, N. F.; Ibata, R. A.; Lewis, G. F.; McConnachie, A.; Babul, A.; Bate, N. F.; Bernard, E.; Chapman, S. C.; Collins, M. M. L.; Conn, A. R.; Crnojevic, D.; Fardal, M. A.; Ferguson, A. M. N.; Irwin, M.; Mackey, A. D.; McMonigal, B.; Navarro, J. F.; Rich, R. M.

2017-04-01

The specifics of the design, acquisition, reduction, and calibration of the Pan-Andromeda Archaeological Survey (PAndAS) survey have been explained in detail in previous contributions from our collaboration (e.g., Ibata+ 2014ApJ...780..128I). This Canada-France-Hawaii Telescope (CFHT) Large Program was built on two previous CFHT surveys led by R. Ibata and A. McConnachie (Ibata+ 2007ApJ...671.1591I; McConnachie+ 2008ApJ...688.1009M), which were further complemented by ~230hr of observation with the same wide-field imager, MegaCam, in order to cover a contiguous region of ~390deg2 within ~150kpc of M31 and ~50kpc of its companion M33. (3 data files).

Polyp morphogenesis in a scyphozoan: Evidence for a head inhibitor from the presumptive foot end in vegetative buds ofCassiopeia andromeda.

PubMed

Neumann, R

1977-03-01

Buds ofCassiopeia andromeda have been transected into fragments of various sizes. Depending on their original position in the organism, on their size and on the age of the dissected buds, the fragments either regenerated or developed to a solitary polyp's head without stalk and peduncle. Generally, basal fragments tended to regenerate complete buds, young apical parts mostly differenciated polyp heads whereas apical and middle parts of progressively older buds regenerated buds with increasing frequency. To explain the alteration of the developmental capacities a head inhibitor is postulated which originates from the basal end of the buds and which expands towards the apical pole with increasing age of the buds.

The methyl- and aza-substituent effects on nonradiative decay mechanisms of uracil in water: a transient absorption study in the UV region.

PubMed

Hua, XinZhong; Hua, LinQiang; Liu, XiaoJun

2016-05-18

The nonradiative decay dynamics of photo-excited uracil (Ura) and its derivatives, i.e., thymine (5-methyluracil, Thy), 6-methyluracil (6-MU) and 6-azauracil (6-AU) in water, has been studied using a femtosecond transient absorption method. The molecules are populated in the lowest (1)ππ* state by a pump pulse at 266 nm, and a broadband continuum in the deep UV region is then employed as the probe. The extension of the continuous UV probe down to 250 nm enables us to investigate comprehensively the population dynamics of the ground states for those molecules and to uncover the substituent effects on nonradiative decay dynamics of uracil. Vibrational cooling in the ground states of Ura, Thy and 6-MU has been directly observed for the first time, providing solid evidence of the ultrafast (1)ππ* → S0 decay. In combination with the ground state bleaching signals, it is consolidated that their lowest (1)ππ* state decays via two parallel pathways, i.e., (1)ππ* → S0 and (1)ππ* → (1)nπ*. Moreover, the contribution of the (1)ππ* → (1)nπ* channel is found to be much smaller for Thy or 6-MU than for Ura. Different from methyl-substitution, the initial (1)ππ* state of the aza-substituent 6-AU decays primarily to the (1)nπ* state, while the (1)ππ* → S0 channel can be negligible. Our study provides a comprehensive understanding of the substituent effects on the excited-state dynamics of uracil in water.

The Photosynthesis and Photo-Stability of Nucleic Acids in Prebiotic Extraterrestrial Environments

PubMed Central

Sandford, Scott A.; Bera, Partha P.; Lee, Timothy J.; Materese, Christopher K.; Nuevo, Michel

2017-01-01

Laboratory experiments have shown that the UV photo-irradiation of low-temperature ices of astrophysical interest leads to the formation of organic molecules, including molecules important for biology such as amino acids, quinones, and amphiphiles. When pyrimidine is introduced in these ices, the products of irradiation include the nucleobases uracil, cytosine, and thymine, the informational sub-units of DNA and RNA, as well as some of their isomers. The formation of these compounds, which has been studied both experimentally and theoretically, requires a succession of additions of OH, NH2, and CH3 groups to pyrimidine. Results show that H2O ice plays key roles in the formation of the nucleobases, as an oxidant, as a matrix in which reactions can take place, and as a catalyst that assists proton abstraction from intermiediate compounds. As H2O is also the most abundant icy component in most cold astrophysical environments, it probably plays the same roles in space for the formation of biologically relevant compounds. Results also show that although the formation of uracil and cytosine from pyrimidine in ices is fairly straightforward, the formation of thymine is not. This is mostly due to the fact that methylation is a limiting step for its formation, particularly in H2O-rich ices, where methylation must competes with oxidation. The relative inefficiency of the abiotic formation of thymine to that of uracil and cytosine, coupled with the fact that thymine has not been detected in meteorites are not inconsistent with the RNA world hypothesis. Indeed, a lack of abiotically produced thymine delivered to the early Earth may have forced the choice for an RNA world, in which only uracil and cytosine are needed, but not thymine. PMID:24500331

Intratumoral gene expression of 5-fluorouracil pharmacokinetics-related enzymes in stage I and II non-small cell lung cancer patients treated with uracil-tegafur after surgery: a prospective multi-institutional study in Japan.

PubMed

Eguchi, Keisuke; Oyama, Takahiko; Tajima, Atsushi; Abiko, Tomohiro; Sawafuji, Makoto; Horio, Hirotoshi; Hashizume, Toshinori; Matsutani, Noriyuki; Kato, Ryoichi; Nakayama, Mitsuo; Kawamura, Masafumi; Kobayashi, Koichi

2015-01-01

This investigation was conducted to assess the use of the intratumoral mRNA expression levels of nucleic acid-metabolizing enzymes as biomarkers of adjuvant chemotherapy for non-small cell lung cancer (NSCLC) using uracil-tegafur in a multi-institutional prospective study. 236 patients with a completely resected NSCLC (adenocarcinoma and squamous cell carcinoma) of pathological stage IA (maximum tumor diameter of 2 cm or greater), IB, and II tumors were given a dose of 250 mg of uracil-tegafur per square meter of body surface area per day orally for two years after surgery. Intratumoral mRNA levels of thymidylate synthase (TS), dihydropyrimidine dehydrogenase (DPD), orotate phosphoribosyltransferase (OPRT), and thymidine phosphorylase (TP) genes relative to an internal standard, β-actin, were determined using laser-capture microdissection and fluorescence-based real time PCR detection systems. Among 5-FU target enzymes, TS was the only one that showed a significant difference in the level of gene expression between the high and low gene expression groups, for both disease-free survival (DFS) and overall survival (OS), when patients were divided according to median values; 5-year DFS rates in high/low TS gene expression were 60.4% and 72.6%, respectively (p=0.050), 5-year OS rates were 78.1% and 88.6%, respectively (p=0.011). Cox's proportional hazard model indicated that the pathological stage and TS gene expression level were independent values for predicting DFS. The TS gene expression level was shown to be an independent predictive factor for DFS in stage I and II NSCLC patients who were treated with uracil-tegafur following surgery. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Toehold-mediated strand displacement reaction-dependent fluorescent strategy for sensitive detection of uracil-DNA glycosylase activity.

PubMed

Wu, Yushu; Wang, Lei; Jiang, Wei

2017-03-15

Sensitive detection of uracil-DNA glycosylase (UDG) activity is beneficial for evaluating the repairing process of DNA lesions. Here, toehold-mediated strand displacement reaction (TSDR)-dependent fluorescent strategy was constructed for sensitive detection of UDG activity. A single-stranded DNA (ssDNA) probe with two uracil bases and a trigger sequence were designed. A hairpin probe with toehold domain was designed, and a reporter probe was also designed. Under the action of UDG, two uracil bases were removed from ssDNA probe, generating apurinic/apyrimidinic (AP) sites. Then, the AP sites could inhibit the TSDR between ssDNA probe and hairpin probe, leaving the trigger sequence in ssDNA probe still free. Subsequently, the trigger sequence was annealed with the reporter probe, initiating the polymerization and nicking amplification reaction. As a result, numerous G-quadruplex (G4) structures were formed, which could bind with N-methyl-mesoporphyrin IX (NMM) to generate enhanced fluorescent signal. In the absence of UDG, the ssDNA probe could hybridize with the toehold domain of the hairpin probe to initiate TSDR, blocking the trigger sequence, and then the subsequent amplification reaction would not occur. The proposed strategy was successfully implemented for detecting UDG activity with a detection limit of 2.7×10 -5 U/mL. Moreover, the strategy could distinguish UDG well from other interference enzymes. Furthermore, the strategy was also applied for detecting UDG activity in HeLa cells lysate with low effect of cellular components. These results indicated that the proposed strategy offered a promising tool for sensitive quantification of UDG activity in UDG-related function study and disease prognosis. Copyright © 2016 Elsevier B.V. All rights reserved.

Role of base-excision repair in the treatment of childhood acute lymphoblastic leukaemia with 6-mercaptopurine and high doses of methotrexate.

PubMed

Stanczyk, M; Sliwinski, T; Trelinska, J; Cuchra, M; Markiewicz, L; Dziki, L; Bieniek, A; Bielecka-Kowalska, A; Kowalski, M; Pastorczak, A; Szemraj, J; Mlynarski, W; Majsterek, I

2012-01-24

Methotrexate (MTX) and 6-mercaptopurine (6MP) are the most commonly used drugs in the therapy of childhood acute lymphoblastic leukaemia (ALL). The main genotoxic effect of MTX resulting from inhibition of thymidylate synthase is mis-incorporation of uracil into DNA, which is considered essential for the effectiveness of the Protocol M in ALL IC BFM 2002/EURO LB 2002 regimens. In this study, we investigated the level of basal and induced DNA damage as well as the effectiveness of DNA repair in lymphocytes of children with ALL at four time-points during therapy with MTX and 6MP. To assess DNA damage and the efficacy of DNA repair we used the modified alkaline comet assay with uracil DNA glycosylase (Udg) and endonuclease III (EndoIII). In addition, we examined the induction of apoptosis in the lymphocytes of the patients during treatment. Finally, we compared the activity of base-excision repair (BER), involved in removal of both uracil and oxidized bases from DNA in lymphocytes of children with ALL and lymphocytes of healthy children. BER efficiency was estimated in an in vitro assay with cellular extracts and plasmid substrates of heteroduplex DNA with an AP-site. Our results indicate that there is a significant decrease in the efficacy of DNA repair associated with an increased level of uracil in DNA and induction of apoptosis during therapy. Moreover, it was found that the BER capacity was decreased in the lymphocytes of ALL patients in contrast to that in lymphocytes of healthy children. Thus, we suggest that an impairment of the BER pathway may play a role in the pathogenesis and therapy of childhood ALL. © 2011 Elsevier B.V. All rights reserved.

Molecular Dynamics Simulations of the Bacterial UraA H+-Uracil Symporter in Lipid Bilayers Reveal a Closed State and a Selective Interaction with Cardiolipin

PubMed Central

Kalli, Antreas C.; Sansom, Mark S. P.; Reithmeier, Reinhart A. F.

2015-01-01

The Escherichia coli UraA H+-uracil symporter is a member of the nucleobase/ascorbate transporter (NAT) family of proteins, and is responsible for the proton-driven uptake of uracil. Multiscale molecular dynamics simulations of the UraA symporter in phospholipid bilayers consisting of: 1) 1-palmitoyl 2-oleoyl-phosphatidylcholine (POPC); 2) 1-palmitoyl 2-oleoyl-phosphatidylethanolamine (POPE); and 3) a mixture of 75% POPE, 20% 1-palmitoyl 2-oleoyl-phosphatidylglycerol (POPG); and 5% 1-palmitoyl 2-oleoyl-diphosphatidylglycerol/cardiolipin (CL) to mimic the lipid composition of the bacterial inner membrane, were performed using the MARTINI coarse-grained force field to self-assemble lipids around the crystal structure of this membrane transport protein, followed by atomistic simulations. The overall fold of the protein in lipid bilayers remained similar to the crystal structure in detergent on the timescale of our simulations. Simulations were performed in the absence of uracil, and resulted in a closed state of the transporter, due to relative movement of the gate and core domains. Anionic lipids, including POPG and especially CL, were found to associate with UraA, involving interactions between specific basic residues in loop regions and phosphate oxygens of the CL head group. In particular, three CL binding sites were identified on UraA: two in the inner leaflet and a single site in the outer leaflet. Mutation of basic residues in the binding sites resulted in the loss of CL binding in the simulations. CL may play a role as a “proton trap” that channels protons to and from this transporter within CL-enriched areas of the inner bacterial membrane. PMID:25729859

Probing the interaction of archaeal DNA polymerases with deaminated bases using X-ray crystallography and non-hydrogen bonding isosteric base analogues†

PubMed Central

Killelea, Tom; Ghosh, Samantak; Tan, Samuel S.; Heslop, Pauline; Firbank, Susan; Kool, Eric T.; Connolly, Bernard A.

2010-01-01

Archaeal family-B DNA polymerases stall replication on encountering the pro-mutagenic bases uracil and hypoxanthine. This publication describes an X-ray crystal structure of Thermococcus gorgonarius polymerase in complex with a DNA containing hypoxanthine in the single-stranded region of the template, two bases ahead of the primer-template junction. Full details of the specific recognition of hypoxanthine are revealed, allowing a comparison with published data that describes uracil binding. The two bases are recognized by the same pocket, in the N-terminal domain, and make very similar protein-DNA interactions. Specificity for hypoxanthine (and uracil) arises from a combination of polymerase-base hydrogen bonds and shape fit between the deaminated bases and the pocket. The structure with hypoxanthine at the +2 position explains the stimulation of the polymerase 3′-5′ proof reading exonuclease, observed with deaminated bases at this location. A β hairpin element, involved in partitioning the primer strand between the polymerase and exonuclease active sites, inserts between the two template bases at the extreme end of the double stranded DNA. This denatures the two complementary primer bases and directs the resulting 3′ single-stranded extension towards the exonuclease active site. Finally the relative importance of hydrogen bonding and shape fit in determining selectivity for deaminated bases has been examined using non-polar isosteres. Affinity for both 2,4 difluorobenzene and fluorobenzimidazole, non-hydrogen bonding shape mimics of uracil and hypoxanthine respectively, is strongly diminished, suggesting polar protein-base contacts are important. However, residual interaction with 2,4 difluorobenzene is seen, confirming a role for shape recognition. PMID:20527806

Photosynthesis and photo-stability of nucleic acids in prebiotic extraterrestrial environments.

PubMed

Sandford, Scott A; Bera, Partha P; Lee, Timothy J; Materese, Christopher K; Nuevo, Michel

2015-01-01

Laboratory experiments have shown that the UV photo-irradiation of low-temperature ices of astrophysical interest leads to the formation of organic molecules, including molecules important for biology such as amino acids, quinones, and amphiphiles. When pyrimidine is introduced into these ices, the products of irradiation include the nucleobases uracil, cytosine, and thymine, the informational sub-units of DNA and RNA, as well as some of their isomers. The formation of these compounds, which has been studied both experimentally and theoretically, requires a succession of additions of OH, NH₂, and CH₃groups to pyrimidine. Results show that H₂O ice plays key roles in the formation of the nucleobases, as an oxidant, as a matrix in which reactions can take place, and as a catalyst that assists proton abstraction from intermediate compounds. As H₂O is also the most abundant icy component in most cold astrophysical environments, it probably plays the same roles in space in the formation of biologically relevant compounds. Results also show that although the formation of uracil and cytosine from pyrimidine in ices is fairly straightforward, the formation of thymine is not. This is mostly due to the fact that methylation is a limiting step for its formation, particularly in H₂O-rich ices, where methylation must compete with oxidation. The relative inefficiency of the abiotic formation of thymine to that of uracil and cytosine, together with the fact that thymine has not been detected in meteorites, are not inconsistent with the RNA world hypothesis. Indeed, a lack of abiotically produced thymine delivered to the early Earth may have forced the choice for an RNA world, in which only uracil and cytosine are needed, but not thymine.

PERSEUS I: A DISTANT SATELLITE DWARF GALAXY OF ANDROMEDA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, Nicolas F.; Laevens, Benjamin P. M.; Schlafly, Edward F.

We present the discovery of a new dwarf galaxy, Perseus I/Andromeda XXXIII, found in the vicinity of Andromeda (M31) in stacked imaging data from the Pan-STARRS1 3π survey. Located 27.°9 away from M31, Perseus I has a heliocentric distance of 785 ± 65 kpc, compatible with it being a satellite of M31 at 374{sub −10}{sup +14} kpc from its host. The properties of Perseus I are typical for a reasonably bright dwarf galaxy (M{sub V} = –10.3 ± 0.7), with an exponential half-light radius of r{sub h} = 1.7 ± 0.4 arcmin or r{sub h}=400{sub −85}{sup +105} pc at thismore » distance, and a moderate ellipticity (ϵ=0.43{sub −0.17}{sup +0.15}). The late discovery of Perseus I is due to its fairly low surface brightness (μ{sub 0}=25.7{sub −0.9}{sup +1.0} mag arcsec{sup –2}), and to the previous lack of deep, high quality photometric data in this region. If confirmed to be a companion of M31, the location of Perseus I, far east from its host, could place interesting constraints on the bulk motion of the satellite system of M31.« less

PANCHROMATIC HUBBLE ANDROMEDA TREASURY. XII. MAPPING STELLAR METALLICITY DISTRIBUTIONS IN M31

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gregersen, Dylan; Seth, Anil C.; Williams, Benjamin F.

We present a study of spatial variations in the metallicity of old red giant branch stars in the Andromeda galaxy. Photometric metallicity estimates are derived by interpolating isochrones for over seven million stars in the Panchromatic Hubble Andromeda Treasury (PHAT) survey. This is the first systematic study of stellar metallicities over the inner 20 kpc of Andromeda’s galactic disk. We see a clear metallicity gradient of −0.020 ± 0.004 dex kpc{sup −1} from ∼4–20 kpc assuming a constant red giant branch age. This metallicity gradient is derived after correcting for the effects of photometric bias and completeness and dust extinction, and ismore » quite insensitive to these effects. The unknown age gradient in M31's disk creates the dominant systematic uncertainty in our derived metallicity gradient. However, spectroscopic analyses of galaxies similar to M31 show that they typically have small age gradients that make this systematic error comparable to the 1σ error on our metallicity gradient measurement. In addition to the metallicity gradient, we observe an asymmetric local enhancement in metallicity at radii of 3–6 kpc that appears to be associated with Andromeda’s elongated bar. This same region also appears to have an enhanced stellar density and velocity dispersion.« less

Antimalarial and antimicrobial activities of 8-Aminoquinoline-Uracils metal complexes

PubMed Central

Phopin, Kamonrat; Sinthupoom, Nujarin; Treeratanapiboon, Lertyot; Kunwittaya, Sarun; Prachayasittikul, Supaluk; Ruchirawat, Somsak; Prachayasittikul, Virapong

2016-01-01

8-Aminoquinoline (8AQ) derivatives have been reported to have antimalarial, anticancer, and antioxidant activities. This study investigated the potency of 8AQ-5-substituted (iodo and nitro) uracils metal (Mn, Cu, Ni) complexes (1-6) as antimalarial and antimicrobial agents. Interestingly, all of these metal complexes (1-6) showed fair antimalarial activities. Moreover, Cu complexes 2 (8AQ-Cu-5Iu) and 5 (8AQ-Cu-5Nu) exerted antimicrobial activities against Gram-negative bacteria including P. shigelloides and S. dysenteriae. The results reveal application of 8AQ and its metal complexes as potential compounds to be further developed as novel antimalarial and antibacterial agents. PMID:27103894

Antimalarial and antimicrobial activities of 8-Aminoquinoline-Uracils metal complexes.

PubMed

Phopin, Kamonrat; Sinthupoom, Nujarin; Treeratanapiboon, Lertyot; Kunwittaya, Sarun; Prachayasittikul, Supaluk; Ruchirawat, Somsak; Prachayasittikul, Virapong

2016-01-01

8-Aminoquinoline (8AQ) derivatives have been reported to have antimalarial, anticancer, and antioxidant activities. This study investigated the potency of 8AQ-5-substituted (iodo and nitro) uracils metal (Mn, Cu, Ni) complexes (1-6) as antimalarial and antimicrobial agents. Interestingly, all of these metal complexes (1-6) showed fair antimalarial activities. Moreover, Cu complexes 2 (8AQ-Cu-5Iu) and 5 (8AQ-Cu-5Nu) exerted antimicrobial activities against Gram-negative bacteria including P. shigelloides and S. dysenteriae. The results reveal application of 8AQ and its metal complexes as potential compounds to be further developed as novel antimalarial and antibacterial agents.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barc, B.; Ryszka, M.; Spurrell, J.

Multi-photon ionization (MPI) of the RNA base uracil has been studied in the wavelength range 220–270 nm, coinciding with excitation to the S{sub 2}(ππ*) state. A fragment ion at m/z = 84 was produced by 2-photon absorption at wavelengths ≤232 nm and assigned to C{sub 3}H{sub 4}N{sub 2}O{sup +} following CO abstraction. This ion has not been observed in alternative dissociative ionization processes (notably electron impact) and its threshold is close to recent calculations of the minimum activation energy for a ring opening conical intersection to a σ(n-π)π* closed shell state. Moreover, the predicted ring opening transition leaves a COmore » group at one end of the isomer, apparently vulnerable to abstraction. An MPI mass spectrum of uracil-water clusters is presented for the first time and compared with an equivalent dry measurement. Hydration enhances certain fragment ion pathways (particularly C{sub 3}H{sub 3}NO{sup +}) but represses C{sub 3}H{sub 4}N{sub 2}O{sup +} production. This indicates that hydrogen bonding to water stabilizes uracil with respect to neutral excited-state ring opening.« less

XRCC1 suppresses somatic hypermutation and promotes alternative nonhomologous end joining in Igh genes.

PubMed

Saribasak, Huseyin; Maul, Robert W; Cao, Zheng; McClure, Rhonda L; Yang, William; McNeill, Daniel R; Wilson, David M; Gearhart, Patricia J

2011-10-24

Activation-induced deaminase (AID) deaminates cytosine to uracil in immunoglobulin genes. Uracils in DNA can be recognized by uracil DNA glycosylase and abasic endonuclease to produce single-strand breaks. The breaks are repaired either faithfully by DNA base excision repair (BER) or mutagenically to produce somatic hypermutation (SHM) and class switch recombination (CSR). To unravel the interplay between repair and mutagenesis, we decreased the level of x-ray cross-complementing 1 (XRCC1), a scaffold protein involved in BER. Mice heterozygous for XRCC1 showed a significant increase in the frequencies of SHM in Igh variable regions in Peyer's patch cells, and of double-strand breaks in the switch regions during CSR. Although the frequency of CSR was normal in Xrcc1(+/-) splenic B cells, the length of microhomology at the switch junctions decreased, suggesting that XRCC1 also participates in alternative nonhomologous end joining. Furthermore, Xrcc1(+/-) B cells had reduced Igh/c-myc translocations during CSR, supporting a role for XRCC1 in microhomology-mediated joining. Our results imply that AID-induced single-strand breaks in Igh variable and switch regions become substrates simultaneously for BER and mutagenesis pathways.

Effects of Hypoxanthine Substitution in Peptide Nucleic Acids Targeting KRAS2 Oncogenic mRNA Molecules: Theory and Experiment

PubMed Central

Sanders, Jeffrey M.; Wampole, Matthew E.; Chen, Chang-Po; Sethi, Dalip; Singh, Amrita; Dupradeau, François-Yves; Wang, Fan; Gray, Brian D.; Thakur, Mathew L.; Wickstrom, Eric

2013-01-01

Genetic disorders can arise from single base substitutions in a single gene. A single base substitution for wild type guanine in the twelfth codon of KRAS2 mRNA occurs frequently to initiate lung, pancreatic, and colon cancer. We have observed single base mismatch specificity in radioimaging of mutant KRAS2 mRNA in tumors in mice by in vivo hybridization with radiolabeled peptide nucleic acid (PNA) dodecamers. We hypothesized that multi-mutant specificity could be achieved with a PNA dodecamer incorporating hypoxanthine, which can form Watson-Crick basepairs with adenine, cytosine, thymine, and uracil. Using molecular dynamics simulations and free energy calculations, we show that hypoxanthine substitutions in PNAs are tolerated in KRAS2 RNA-PNA duplexes where wild type guanine is replaced by mutant uracil or adenine in RNA. To validate our predictions, we synthesized PNA dodecamers with hypoxanthine, and then measured the thermal stability of RNA-PNA duplexes. Circular dichroism thermal melting results showed that hypoxanthine-containing PNAs are more stable in duplexes where hypoxanthine-adenine and hypoxanthine-uracil base pairs are formed than single mismatch duplexes or duplexes containing hypoxanthine-guanine opposition. PMID:23972113

[Over-expression of uracil DNA glycosylase 2 (UNG2) enhances the resistance to oxidative damage in HepG2 cells].

PubMed

Cao, Liyan; Cheng, Shan; Du, Juan; Guo, Yanhai; Huang, Xiaofeng

2017-04-01

Objective To investigate the uracil glycosidic enzyme activity of uracil DNA glycosylase 2 (UNG2) and study the role of UNG2 in the resistance of antioxidant stress of HepG2 cells. Methods The UNG2-expressing vector was built. Western blotting was used to detect the expression of UNG2. Immunofluorescence staining was performed to observe the cellular location of UNG2. Oligonucleotide was used as substrate for the determination of the UNG2 glycosidic enzyme activity. H 2 O 2 toxicity assay was done to study the function of UNG2 in the antioxidant resistance of hepatocellular carcinoma HepG2 cells. Results UNG2 was successfully over-expressed in HEK293FT cells, and UNG2 was found to be mainly located in nucleus. Enzyme activity assay showed that UNG2 had significant oligonucleotide dU glycosidic enzyme activity. H 2 O 2 toxicity assay showed that over-expressed UNG2 could remarkably increase the survival of HepG2 cells after exposed to H 2 O 2 . Conclusion UNG2 possesses specific DNA glycosidic enzyme activity, and it can protect HepG2 cells against oxidative stress damage.

Unravelling the potential of a new uracil phosphoribosyltransferase (UPRT) from Arabidopsis thaliana in sensitizing HeLa cells towards 5-fluorouracil.

PubMed

Narayanan, Sharmila; Sanpui, Pallab; Sahoo, Lingaraj; Ghosh, Siddhartha Sankar

2016-10-01

In silico studies with uracil phosphoribosyltransferase from Arabidopsis thaliana (AtUPRT) revealed its lower binding energies for uracil and 5-fluorouracil (5-FU) as compared to those of bacterial UPRT indicating the prospective of AtUPRT in gene therapy implications. Hence, AtUPRT was cloned and stably expressed in cervical cancer cells (HeLa) to investigate the effect of prodrug 5-FU on these transfected cancer cells. The treatment of AtUPRT-expressing HeLa (HeLa-UPP) cells with 5-FU for 72h resulted in significant decrease in cell viability. Moreover, 5-FU was observed to induce apoptosis and perturb mitochondrial membrane potential in HeLa-UPP cells. While cell cycle analysis revealed significant S-phase arrest as a result of 5-FU treatment in HeLa-UPP cells, quantitative gene expression analysis demonstrated simultaneous upregulation of important cell cycle related genes, cyclin D1 and p21. The survival fractions of non-transfected, vector-transfected and AtUPRT-transfected HeLa cells, following 5-FU treatment, were calculated to be 0.425, 0.366 and 0.227, respectively. Copyright © 2016 Elsevier B.V. All rights reserved.

Immunochemical characterization of the anti-RNA antibodies found in scleroderma and systemic lupus erythematosus. II. Reactivity with hsa-coupled, uridine-containing, monophosphoric ribodinucleotides.

PubMed Central

Alarcón-Segovia, D; Fishbein, E; Estrada-Parra, S; García-Ortigoza, E

1976-01-01

Sera from patients with scleroderma have been found to have anti-RNA antibodies which react with human serum albumin (HSA)-coupled uridine and uridine monophosphate (UMP) and are inhibited by uracil, uridine and UMP. Scleroderma sera react uniformly with 5'-polyuridylic acid (poly(U)) and fail to react with polyadenylic, polyuridylic acid poly(A) - poly(U)) which is also indicative of their uracil specificity. Anti-RNA antibodies found in systemic lupus erythematosus (SLE) are immunochemically different from those found in scleroderma in that, instead of being uniformly specific to uracil, they are markedly heterogeneous and may react with uracil, uridine and/or UMP. SLE sera frequently react with poly(A) - poly(U), indicating also their ability to recognize the double helical structure of double-stranded RNA. Thirty-seven scleroderma and thirty-four SLE sera from as many patients with either of these conditions were tested against HSA-coupled, uridine-containing monophosphoric dinucleotides in an attempt to characterize further their anti-RNA antibodies. Scleroderma sera were found to react primarily with dinucleotides in which uridine was the base proximal to the carrier protein and, except for sera that also contained antibodies to adenosine which reacted with UpA, they failed to react with dinucleotides in which uridine was in a terminal position only. Reaction with dinucleotides in which uridine was proximal to the carrier protein could be inhibited by uracil but not by the corresponding terminal base. Some lupus sera were found to react with both dinucleotides that contain the same bases in opposite sequence, e.g. ApU and UpA, while others were found to react with only one of the sequences. They were also found to react more frequently with dinucleotides in which HSA was coupled to a base other than uridine, suggesting that the reaction is primarily due to anti-DNA antibodies. Because immunization with dinucleotides coupled to protein prepared by the same method we have used, yields higher specificity to the base attached to the carrier protein, our findings suggest that, in scleroderma, a single event, akin to that of immunization with a purified antigen, gives rise to the anti-RNA antibodies, whereas in systemic lupus erythematosus there is a considerably wider immunological aberration. PMID:1082854

Structure determination of uracil-DNA N-glycosylase from Deinococcus radiodurans in complex with DNA.

PubMed

Pedersen, Hege Lynum; Johnson, Kenneth A; McVey, Colin E; Leiros, Ingar; Moe, Elin

2015-10-01

Uracil-DNA N-glycosylase (UNG) is a DNA-repair enzyme in the base-excision repair (BER) pathway which removes uracil from DNA. Here, the crystal structure of UNG from the extremophilic bacterium Deinococcus radiodurans (DrUNG) in complex with DNA is reported at a resolution of 1.35 Å. Prior to the crystallization experiments, the affinity between DrUNG and different DNA oligonucleotides was tested by electrophoretic mobility shift assays (EMSAs). As a result of this analysis, two 16 nt double-stranded DNAs were chosen for the co-crystallization experiments, one of which (16 nt AU) resulted in well diffracting crystals. The DNA in the co-crystal structure contained an abasic site (substrate product) flipped into the active site of the enzyme, with no uracil in the active-site pocket. Despite the high resolution, it was not possible to fit all of the terminal nucleotides of the DNA complex into electron density owing to disorder caused by a lack of stabilizing interactions. However, the DNA which was in contact with the enzyme, close to the active site, was well ordered and allowed detailed analysis of the enzyme-DNA interaction. The complex revealed that the interaction between DrUNG and DNA is similar to that in the previously determined crystal structure of human UNG (hUNG) in complex with DNA [Slupphaug et al. (1996). Nature (London), 384, 87-92]. Substitutions in a (here defined) variable part of the leucine loop result in a shorter loop (eight residues instead of nine) in DrUNG compared with hUNG; regardless of this, it seems to fulfil its role and generate a stabilizing force with the minor groove upon flipping out of the damaged base into the active site. The structure also provides a rationale for the previously observed high catalytic efficiency of DrUNG caused by high substrate affinity by demonstrating an increased number of long-range electrostatic interactions between the enzyme and the DNA. Interestingly, specific interactions between residues in the N-terminus of a symmetry-related molecule and the complementary DNA strand facing away from the active site were also observed which seem to stabilize the enzyme-DNA complex. However, the significance of this observation remains to be investigated. The results provide new insights into the current knowledge about DNA damage recognition and repair by uracil-DNA glycosylases.

Search for TeV gamma ray emission from the Andromeda galaxy

NASA Astrophysics Data System (ADS)

Aharonian, F. A.; Akhperjanian, A. G.; Beilicke, M.; Bernlöhr, K.; Bojahr, H.; Bolz, O.; Börst, H.; Coarasa, T.; Contreras, J. L.; Cortina, J.; Denninghoff, S.; Fonseca, V.; Girma, M.; Götting, N.; Heinzelmann, G.; Hermann, G.; Heusler, A.; Hofmann, W.; Horns, D.; Jung, I.; Kankanyan, R.; Kestel, M.; Kettler, J.; Kohnle, A.; Konopelko, A.; Kornmeyer, H.; Kranich, D.; Krawczynski, H.; Lampeitl, H.; Lopez, M.; Lorenz, E.; Lucarelli, F.; Mang, O.; Meyer, H.; Mirzoyan, R.; Moralejo, A.; Ona, E.; Panter, M.; Plyasheshnikov, A.; Pühlhofer, G.; Rauterberg, G.; Reyes, R.; Rhode, W.; Ripken, J.; Röhring, A.; Rowell, G. P.; Sahakian, V.; Samorski, M.; Schilling, M.; Siems, M.; Sobzynska, D.; Stamm, W.; Tluczykont, M.; Völk, H. J.; Wiedner, C. A.; Wittek, W.

2003-03-01

Using the HEGRA system of imaging atmospheric Cherenkov telescopes, the Andromeda galaxy (M 31) was surveyed for TeV gamma ray emission. Given the large field of view of the HEGRA telescopes, three pointings were sufficient to cover all of M 31, including also M 32 and NGC 205. No indications for point sources of TeV gamma rays were found. Upper limits are given at a level of a few percent of the Crab flux. A specific search for monoenergetic gamma-ray lines from annihilation of supersymmetric dark matter particles accumulating near the center of M 31 resulted in flux limits in the 10-13 cm-2 s-1 range, well above the predicted MSSM flux levels except for models with pronounced dark-matter spikes or strongly enhanced annihilation rates.

MOND Calculations of Bulk Dispersions and Radial Dispersion Profiles of Milky Way and Andromeda Dwarf Spheroidal Galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alexander, S. G.; Walentosky, M. J.; Messinger, Justin

We present a new computational method for calculating the motion of stars in a dwarf spheroidal galaxy (dSph) that can use either Newtonian gravity or Modified Newtonian Dynamics (MOND). In our model, we explicitly calculate the motion of several thousand stars in a spherically symmetric gravitational potential, and we statistically obtain both the line-of-sight bulk velocity dispersion and dispersion profile. Our results for MOND calculated bulk dispersions for Local Group dSph’s agree well with previous calculations and observations. Our MOND calculated dispersion profiles are compared with the observations of Walker et al. for Milky Way dSph’s, and we present calculatedmore » dispersion profiles for a selection of Andromeda dSph’s.« less

A three-dimensional orbit for the binary star Alpha Andromedae

NASA Astrophysics Data System (ADS)

Branham, Richard L., Jr.

2017-01-01

Stars that are both spectroscopic and optical binaries present a means to determine simultaneously the masses of the components and the distance of the system independent of trigonometric parallax. Alpha Andromedae (Alpheratz) represents such a system and, moreover, the primary is the brightest of the mercury-manganese stars. An orbit, based on 42 interferometric observations and 378 radial velocities, is calculated to solve for 10 parameters: the six coefficients of the apparent ellipse, the constant of areal velocity, the systemic velocity, and the semi-amplitudes. From these, one calculates the orbit of the binary, its period and time of periastron passage, the masses of the components, and the distance of the system. The dynamical parallax does not differ greatly from the trigonometric parallax found from Hipparcos.

A methodology for obtaining on-orbit SI-traceable spectral radiance measurements in the thermal infrared

NASA Astrophysics Data System (ADS)

Dykema, John A.; Anderson, James G.

2006-06-01

A methodology to achieve spectral thermal radiance measurements from space with demonstrable on-orbit traceability to the International System of Units (SI) is described. This technique results in measurements of infrared spectral radiance R(\\tilde {\\upsilon }) , with spectral index \\tilde {\\upsilon } in cm-1, with a relative combined uncertainty u_c[R(\\tilde {\\upsilon })] of 0.0015 (k = 1) for the average mid-infrared radiance emitted by the Earth. This combined uncertainty, expressed in brightness temperature units, is equivalent to ±0.1 K at 250 K at 750 cm-1. This measurement goal is achieved by utilizing a new method for infrared scale realization combined with an instrument design optimized to minimize component uncertainties and admit tests of radiometric performance. The SI traceability of the instrument scale is established by evaluation against source-based and detector-based infrared scales in defined laboratory protocols before launch. A novel strategy is executed to ensure fidelity of on-orbit calibration to the pre-launch scale. This strategy for on-orbit validation relies on the overdetermination of instrument calibration. The pre-launch calibration against scales derived from physically independent paths to the base SI units provides the foundation for a critical analysis of the overdetermined on-orbit calibration to establish an SI-traceable estimate of the combined measurement uncertainty. Redundant calibration sources and built-in diagnostic tests to assess component measurement uncertainties verify the SI traceability of the instrument calibration over the mission lifetime. This measurement strategy can be realized by a practical instrument, a prototype Fourier-transform spectrometer under development for deployment on a small satellite. The measurement record resulting from the methodology described here meets the observational requirements for climate monitoring and climate model testing and improvement.

Astrophysics: Hidden chaos in cosmic order

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gnedin, Nickolay Y.; /Fermilab

'Galaxies, like elephants, have long memories,' says an influential article from the 1980s. Tapping into these memories has revealed some surprising facts about the history of our neighbouring Andromeda galaxy.

Astrophysics: Hidden chaos in cosmic order

NASA Astrophysics Data System (ADS)

Gnedin, Nickolay Y.

2009-09-01

``Galaxies, like elephants, have long memories,'' says an influential article from the 1980s. Tapping into these memories has revealed some surprising facts about the history of our neighbouring Andromeda galaxy.

Science and the Citizen.

ERIC Educational Resources Information Center

Scientific American, 1978

1978-01-01

Describes scientific events: computed tomography (CT) scanner and its costs, existence of Upsilon particle in its lowest excited state, animal psychology to determine their capabilities of symbolic communication, findings of Viking mission about Mars and its two moons, and finally gives credit to first discoverer of penicillin. (GA)

Limits on the decay-rate difference of neutral B mesons and on CP, T, and CPT violation in B(0-0)B oscillations.

PubMed

Aubert, B; Barate, R; Boutigny, D; Gaillard, J-M; Hicheur, A; Karyotakis, Y; Lees, J P; Robbe, P; Tisserand, V; Zghiche, A; Palano, A; Pompili, A; Chen, J C; Qi, N D; Rong, G; Wang, P; Zhu, Y S; Eigen, G; Ofte, I; Stugu, B; Abrams, G S; Borgland, A W; Breon, A B; Brown, D N; Button-Shafer, J; Cahn, R N; Charles, E; Day, C T; Gill, M S; Gritsan, A V; Groysman, Y; Jacobsen, R G; Kadel, R W; Kadyk, J; Kerth, L T; Kolomensky, Yu G; Kral, J F; Kukartsev, G; LeClerc, C; Levi, M E; Lynch, G; Mir, L M; Oddone, P J; Orimoto, T J; Pripstein, M; Roe, N A; Romosan, A; Ronan, M T; Shelkov, V G; Telnov, A V; Wenzel, W A; Ford, K; Harrison, T J; Hawkes, C M; Knowles, D J; Morgan, S E; Penny, R C; Watson, A T; Watson, N K; Deppermann, T; Goetzen, K; Held, T; Koch, H; Lewandowski, B; Pelizaeus, M; Peters, K; Schmuecker, H; Steinke, M; Barlow, N R; Boyd, J T; Chevalier, N; Cottingham, W N; Kelly, M P; Latham, T E; Mackay, C; Wilson, F F; Abe, K; Cuhadar-Donszelmann, T; Hearty, C; Mattison, T S; McKenna, J A; Thiessen, D; Kyberd, P; McKemey, A K; Blinov, V E; Bukin, A D; Golubev, V B; Ivanchenko, V N; Kravchenko, E A; Onuchin, A P; Serednyakov, S I; Skovpen, Yu I; Solodov, E P; Yushkov, A N; Best, D; Bruinsma, M; Chao, M; Kirkby, D; Lankford, A J; Mandelkern, M; Mommsen, R K; Roethel, W; Stoker, D P; Buchanan, C; Hartfiel, B L; Shen, B C; del Re, D; Hadavand, H K; Hill, E J; MacFarlane, D B; Paar, H P; Rahatlou, Sh; Sharma, V; Berryhill, J W; Campagnari, C; Dahmes, B; Levy, S L; Long, O; Lu, A; Mazur, M A; Richman, J D; Verkerke, W; Beck, T W; Beringer, J; Eisner, A M; Heusch, C A; Lockman, W S; Schalk, T; Schmitz, R E; Schumm, B A; Seiden, A; Turri, M; Walkowiak, W; Williams, D C; Wilson, M G; Albert, J; Chen, E; Dubois-Felsmann, G P; Dvoretskii, A; Hitlin, D G; Narsky, I; Porter, F C; Ryd, A; Samuel, A; Yang, S; Jayatilleke, S; Mancinelli, G; Meadows, B T; Sokoloff, M D; Abe, T; Blanc, F; Bloom, P; Chen, S; Clark, P J; Ford, W T; Nauenberg, U; Olivas, A; Rankin, P; Roy, J; Smith, J G; van Hoek, W C; Zhang, L; Harton, J L; Hu, T; Soffer, A; Toki, W H; Wilson, R J; Zhang, J; Altenburg, D; Brandt, T; Brose, J; Colberg, T; Dickopp, M; Dubitzky, R S; Hauke, A; Lacker, H M; Maly, E; Müller-Pfefferkorn, R; Nogowski, R; Otto, S; Schubert, J; Schubert, K R; Schwierz, R; Spaan, B; Wilden, L; Bernard, D; Bonneaud, G R; Brochard, F; Cohen-Tanugi, J; Grenier, P; Thiebaux, Ch; Vasileiadis, G; Verderi, M; Khan, A; Lavin, D; Muheim, F; Playfer, S; Swain, J E; Tinslay, J; Andreotti, M; Azzolini, V; Bettoni, D; Bozzi, C; Calabrese, R; Cibinetto, G; Luppi, E; Negrini, M; Piemontese, L; Sarti, A; Treadwell, E; Anulli, F; Baldini-Ferroli, R; Biasini, M; Calcaterra, A; de Sangro, R; Falciai, D; Finocchiaro, G; Patteri, P; Peruzzi, I M; Piccolo, M; Pioppi, M; Zallo, A; Buzzo, A; Capra, R; Contri, R; Crosetti, G; Lo Vetere, M; Macri, M; Monge, M R; Passaggio, S; Patrignani, C; Robutti, E; Santroni, A; Tosi, S; Bailey, S; Morii, M; Won, E; Bhimji, W; Bowerman, D A; Dauncey, P D; Egede, U; Eschrich, I; Gaillard, J R; Morton, G W; Nash, J A; Sanders, P; Taylor, G P; Grenier, G J; Lee, S-J; Mallik, U; Cochran, J; Crawley, H B; Lamsa, J; Meyer, W T; Prell, S; Rosenberg, E I; Yi, J; Davier, M; Grosdidier, G; Höcker, A; Laplace, S; Le Diberder, F; Lepeltier, V; Lutz, A M; Petersen, T C; Plaszczynski, S; Schune, M H; Tantot, L; Wormser, G; Brigljević, V; Cheng, C H; Lange, D J; Wright, D M; Bevan, A J; Coleman, J P; Fry, J R; Gabathuler, E; Gamet, R; Kay, M; Parry, R J; Payne, D J; Sloane, R J; Touramanis, C; Back, J J; Harrison, P F; Shorthouse, H W; Strother, P; Vidal, P B; Brown, C L; Cowan, G; Flack, R L; Flaecher, H U; George, S; Green, M G; Kurup, A; Marker, C E; McMahon, T R; Ricciardi, S; Salvatore, F; Vaitsas, G; Winter, M A; Brown, D; Davis, C L; Allison, J; Barlow, R J; Forti, A C; Hart, P A; Jackson, F; Lafferty, G D; Lyon, A J; Weatherall, J H; Williams, J C; Farbin, A; Jawahery, A; Kovalskyi, D; Lae, C K; Lillard, V; Roberts, D A; Blaylock, G; Dallapiccola, C; Flood, K T; Hertzbach, S S; Kofler, R; Koptchev, V B; Moore, T B; Saremi, S; Staengle, H; Willocq, S; Cowan, R; Sciolla, G; Taylor, F; Yamamoto, R K; Mangeol, D J J; Milek, M; Patel, P M; Lazzaro, A; Palombo, F; Bauer, J M; Cremaldi, L; Eschenburg, V; Godang, R; Kroeger, R; Reidy, J; Sanders, D A; Summers, D J; Zhao, H W; Brunet, S; Cote-Ahern, D; Hast, C; Taras, P; Nicholson, H; Cartaro, C; Cavallo, N; De Nardo, G; Fabozzi, F; Gatto, C; Lista, L; Paolucci, P; Piccolo, D; Sciacca, C; Baak, M A; Raven, G; LoSecco, J M; Gabriel, T A; Brau, B; Gan, K K; Honscheid, K; Hufnagel, D; Kagan, H; Kass, R; Pulliam, T; Wong, Q K; Brau, J; Frey, R; Potter, C T; Sinev, N B; Strom, D; Torrence, E; Colecchia, F; Dorigo, A; Galeazzi, F; Margoni, M; Morandin, M; Posocco, M; Rotondo, M; Simonetto, F; Stroili, R; Tiozzo, G; Voci, C; Benayoun, M; Briand, H; Chauveau, J; David, P; de la Vaissière, Ch; Del Buono, L; Hamon, O; John, M J J; Leruste, Ph; Ocariz, J; Pivk, M; Roos, L; Stark, J; T'Jampens, S; Therin, G; Manfredi, P F; Re, V; Behera, P K; Gladney, L; Guo, Q H; Panetta, J; Angelini, C; Batignani, G; Bettarini, S; Bondioli, M; Bucci, F; Calderini, G; Carpinelli, M; Forti, F; Giorgi, M A; Lusiani, A; Marchiori, G; Martinez-Vidal, F; Morganti, M; Neri, N; Paoloni, E; Rama, M; Rizzo, G; Sandrelli, F; Walsh, J; Haire, M; Judd, D; Paick, K; Wagoner, D E; Danielson, N; Elmer, P; Lu, C; Miftakov, V; Olsen, J; Smith, A J S; Tanaka, H A; Varnes, E W; Bellini, F; Cavoto, G; Faccini, R; Ferrarotto, F; Ferroni, F; Gaspero, M; Mazzoni, M A; Morganti, S; Pierini, M; Piredda, G; Safai Tehrani, F; Voena, C; Christ, S; Wagner, G; Waldi, R; Adye, T; De Groot, N; Franek, B; Geddes, N I; Gopal, G P; Olaiya, E O; Xella, S M; Aleksan, R; Emery, S; Gaidot, A; Ganzhur, S F; Giraud, P-F; Hamel de Monchenault, G; Kozanecki, W; Langer, M; Legendre, M; London, G W; Mayer, B; Schott, G; Vasseur, G; Yeche, Ch; Zito, M; Purohit, M V; Weidemann, A W; Yumiceva, F X; Aston, D; Bartoldus, R; Berger, N; Boyarski, A M; Buchmueller, O L; Convery, M R; Coupal, D P; Dong, D; Dorfan, J; Dujmic, D; Dunwoodie, W; Field, R C; Glanzman, T; Gowdy, S J; Granges-Pous, E; Hadig, T; Halyo, V; Hryn'ova, T; Innes, W R; Jessop, C P; Kelsey, M H; Kim, P; Kocian, M L; Langenegger, U; Leith, D W G S; Luitz, S; Luth, V; Lynch, H L; Marsiske, H; Messner, R; Muller, D R; O'Grady, C P; Ozcan, V E; Perazzo, A; Perl, M; Petrak, S; Ratcliff, B N; Robertson, S H; Roodman, A; Salnikov, A A; Schindler, R H; Schwiening, J; Simi, G; Snyder, A; Soha, A; Stelzer, J; Su, D; Sullivan, M K; Va'vra, J; Wagner, S R; Weaver, M; Weinstein, A J R; Wisniewski, W J; Wright, D H; Young, C C; Burchat, P R; Edwards, A J; Meyer, T I; Petersen, B A; Roat, C; Ahmed, M; Ahmed, S; Alam, M S; Ernst, J A; Saleem, M; Wappler, F R; Bugg, W; Krishnamurthy, M; Spanier, S M; Eckmann, R; Kim, H; Ritchie, J L; Schwitters, R F; Izen, J M; Kitayama, I; Lou, X C; Ye, S; Bianchi, F; Bona, M; Gallo, F; Gamba, D; Borean, C; Bosisio, L; Della Ricca, G; Dittongo, S; Grancagnolo, S; Lanceri, L; Poropat, P; Vitale, L; Vuagnin, G; Panvini, R S; Banerjee, Sw; Brown, C M; Fortin, D; Jackson, P D; Kowalewski, R; Roney, J M; Band, H R; Dasu, S; Datta, M; Eichenbaum, A M; Johnson, J R; Kutter, P E; Li, H; Liu, R; Di Lodovico, F; Mihalyi, A; Mohapatra, A K; Pan, Y; Prepost, R; Sekula, S J; von Wimmersperg-Toeller, J H; Wu, J; Wu, S L; Yu, Z; Neal, H

2004-05-07

Using events in which one of two neutral B mesons from the decay of an Upsilon(4S) meson is fully reconstructed, we determine parameters governing decay (DeltaGamma(d)/Gamma(d)), CP, and T violation (|q/p|), and CP and CPT violation (Re z,Im z). The results, obtained from an analysis of 88 x 10(6) Upsilon(4S) decays recorded by BABAR, are sgn(Re lambda(CP))DeltaGamma(d)/Gamma(d)=-0.008+/-0.037(stat)+/-0.018(syst)[-0.084,0.068],|q/p|=1.029+/-0.013(stat)+/-0.011(syst)[1.001,1.057],(Re lambda(CP)/|lambda(CP)|) Re z=0.014+/-0.035(stat)+/-0.034(syst)[-0.072,0.101],Im z=0.038+/-0.029(stat)+/-0.025(syst)[-0.028,0.104]. The values inside the square brackets indicate the 90% confidence-level intervals. These results are consistent with standard model expectations.

Generation of high energetic ions from hollow cathode discharge

DOE Office of Scientific and Technical Information (OSTI.GOV)

Atta, M.; El Nadai, L.; Lie, Y.T.

1995-12-31

High energetic beams of ions can be produced by using the dense and highly ionized plasma that is generated by the vacuum arc. Ian G. Brown (1993) described the general features and performance characteristics of the ion sources and their use for accelerator injection and ion implantation applications. Atta, at al. (1993) found that the ratio of ion density to electron density has been decreased beside the hollow cathode at different hole diameter due to increasing the ionization degree. Here we have evaluated the ion velocity distribution F(v) = S{Upsilon}(t)/V{sup 2}, where {Upsilon}(t) is the ion flux intensity, S ismore » the distance between the hollow cathode spot and the quadrupole maps spectrometer, and V is the ion velocity. The ion energy (E=mV{sup 2}/2, in is the mass of the ion), and the ion fraction due to the total number of ions for different ion species emitted from graphite and titanium hollow cathode have been determined.« less

A Model of the Influence of Neutral Air Dynamics on the Seasonal Variation in the Low Ionosphere

NASA Technical Reports Server (NTRS)

Nestorov, G.; Velinov, P. J.; Pancheva, T.

1984-01-01

Recently it has become clear that the phenomena in the ionospheric D-region are determined to a great extent by dynamical processes in the strato-mesosphere D-region. In this respect much attention is paid to the study of the winter anomaly (WA) phenomenon on medium and short radiowaves, in which the meteorological character of the lower ionosphere is most prominent. Significant experimental data about the variations of the electron concentration, N, ion composition, temperature and dynamic regime during WA permit a better understanding of the character of the physical processes in the middle atmosphere. The influence of the neutral wind on the seasonal variation of the electron concentration N for the altitude interval 90 or = z or = 120 km, where the ratio upsilon sub in/omega sub i, of the ion-neutral collision frequency, upsilon sub in and the ion gyrofrequency, omega sub i decreases from 40 to 1 was evaluated. CIRA-72 is used as a model of the zonal wind.

New flavor production in. gamma. ,. mu. ,. nu. , and hadron beams. [Review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wojcicki, S.

1980-01-01

During the last few years the main emphasis in the study of heavy particle production (mainly charm) by means other than e/sup +/e/sup -/ annihilation has been on the production mechanisms. This review concentrates mainly on the production data in ..gamma.., ..mu.., ..nu.., and hadron beams. The heavy flavor searches divide themselves naturally into three categories, each one characterized by its own peculiar advantages and shortcomings; these are summarized briefly. Then the following topics are taken up: charm production by hadrons (central production, forward production - ..lambda../sub c/ and D production, anomalies and discrepancies), charm production by photons and muons,more » new flavor production by neutrinos, status of heavier flavors, and production bound flavors (eta/sub c/ search, UPSILON muoproduction, J/psi and UPSILON hadroproduction, J/psi muoproduction). In his outlook for the future, the author presents a few words concerning the status of detectors: emulsions, high-resolution streamer chambers, high-resolution bubble chambers, and solid-state detectors. 83 references, 36 figures, 4 tables. (RWR)« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conn, A. R.; Parker, Q. A.; Zucker, D. B.

In 'A Bayesian Approach to Locating the Red Giant Branch Tip Magnitude (Part I)', a new technique was introduced for obtaining distances using the tip of the red giant branch (TRGB) standard candle. Here we describe a useful complement to the technique with the potential to further reduce the uncertainty in our distance measurements by incorporating a matched-filter weighting scheme into the model likelihood calculations. In this scheme, stars are weighted according to their probability of being true object members. We then re-test our modified algorithm using random-realization artificial data to verify the validity of the generated posterior probability distributionsmore » (PPDs) and proceed to apply the algorithm to the satellite system of M31, culminating in a three-dimensional view of the system. Further to the distributions thus obtained, we apply a satellite-specific prior on the satellite distances to weight the resulting distance posterior distributions, based on the halo density profile. Thus in a single publication, using a single method, a comprehensive coverage of the distances to the companion galaxies of M31 is presented, encompassing the dwarf spheroidals Andromedas I-III, V, IX-XXVII, and XXX along with NGC 147, NGC 185, M33, and M31 itself. Of these, the distances to Andromedas XXIV-XXVII and Andromeda XXX have never before been derived using the TRGB. Object distances are determined from high-resolution tip magnitude posterior distributions generated using the Markov Chain Monte Carlo technique and associated sampling of these distributions to take into account uncertainties in foreground extinction and the absolute magnitude of the TRGB as well as photometric errors. The distance PPDs obtained for each object both with and without the aforementioned prior are made available to the reader in tabular form. The large object coverage takes advantage of the unprecedented size and photometric depth of the Pan-Andromeda Archaeological Survey. Finally, a preliminary investigation into the satellite density distribution within the halo is made using the obtained distance distributions. For simplicity, this investigation assumes a single power law for the density as a function of radius, with the slope of this power law examined for several subsets of the entire satellite sample.« less

The Andromeda Optical and Infrared Disk Survey

NASA Astrophysics Data System (ADS)

Sick, Jonathan

The spectral energy distributions of galaxies inform us about a galaxy's stellar populations and interstellar medium, revealing stories of galaxy formation and evolution. How we interpret this light depends in part on our proximity to the galaxy. For nearby galaxies, detailed star formation histories can be extracted from the resolved stellar populations, while more distant galaxies feature the contributions of entire stellar populations within their integrated spectral energy distribution (SED). This thesis aims to resolve whether the techniques used to investigate stellar populations in distant galaxies are consistent with those available for nearby galaxies. As the nearest spiral galaxy, the Andromeda Galaxy (M31) is the ideal testbed for the joint study of resolved stellar populations and panchromatic SEDs. We present the Andromeda Optical and Infrared Disk Survey (ANDROIDS), which adds new near-UV to near-IR (u*g'r'i'JKs) imaging using the MegaCam and WIRCam cameras at the Canada-France-Hawaii telescope to the available M31 panchromatic dataset. To accurately subtract photometric background from our extremely wide-field (14 square degree) mosaics, we present observing and data reduction techniques with sky-target nodding, optimization of image-to-image surface brightness, and a novel hierarchical Bayesian model to trace the background signal while modelling the astrophysical SED. We model the spectral energy distributions of M31 pixels with MAGPHYS (da Cunha et al. 2008) and compare those results to resolved stellar population models of the same pixels from the Panchromatic Hubble Andromeda Treasury (PHAT) survey (Williams et al. 2017). We find substantial (0.3 dex) differences in stellar mass estimates despite a common use of the Chabrier (2003) initial mass function. Stellar mass estimated from the resolved stellar population is larger than any mass estimate from SED models or colour-M/L relations (CMLRs). There is also considerable diversity among CMLR estimators, largely driven by differences in the star formation history prior distribution. We find broad consistency between the star formation history estimated by integrated spectral energy distributions and resolved stars. Generally, spectral energy distribution models yield a stronger inside-out radial metallicity gradient and bias towards younger mean ages than resolved stellar population models.

Using a Weak CN Spectral Feature as a Marker for Massive AGB Stars in the Andromeda Galaxy

NASA Astrophysics Data System (ADS)

Guhathakurta, Puragra; Kamath, Anika; Sales, Alyssa; Sarukkai, Atmika; Hays, Jon; PHAT Collaboration; SPLASH Collaboration

2017-01-01

The Panchromatic Hubble Andromeda Treasury (PHAT) survey has produced six-filter photometry at near-ultraviolet, optical and nearly infrared wavelengths (F275W, F336W, F475W, F814W, F110W and F160W) for over 100 million stars in the disk of the of the Andromeda galaxy (M31). As part of the Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo (SPLASH) survey, medium resolution (R ~ 2000) spectra covering the wavelength range 4500-9500A were obtained for over 5000 relatively bright stars from the PHAT source catalog using the Keck II 10-meter telescope and DEIMOS spectrograph. While searching for carbon stars in the spectroscopic data set, we discovered a rare population of stars that show a weak CN spectral absorption feature at ~7900A (much weaker than the CN feature in typical carbon stars) along with other spectral absorption features like TiO and the Ca triplet that are generally not present/visible in carbon star spectra but that are typical for normal stars with oxygen rich atmospheres. These 150 or so "weak CN" stars appear to be fairly localized in six-filter space (i.e., in various color-color and color-magnitude diagrams) but are generally offset from carbon stars. Comparison to PARSEC model stellar tracks indicates that these weak CN stars are probably massive (5-10 Msun) asymptotic giant branch (AGB) stars in a relatively short-lived core helium burning phase of their evolution. Careful spectroscopic analysis indicates that the details of the CN spectral feature are about 3-4x weaker in weak CN stars than in carbon stars. The kinematics of weak CN stars are similar to those of other young stars (e.g., massive main sequence stars) and reflect the well ordered rotation of M31's disk.This research project is funded in part by NASA/STScI and the National Science Foundation. Much of this work was carried out by high school students and undergraduates under the auspices of the Science Internship Program and LAMAT program at the University of California Santa Cruz.

A new interferometric study of four exoplanet host stars: θ Cygni, 14 Andromedae, υ Andromedae and 42 Draconis

NASA Astrophysics Data System (ADS)

Ligi, R.; Mourard, D.; Lagrange, A. M.; Perraut, K.; Boyajian, T.; Bério, Ph.; Nardetto, N.; Tallon-Bosc, I.; McAlister, H.; ten Brummelaar, T.; Ridgway, S.; Sturmann, J.; Sturmann, L.; Turner, N.; Farrington, C.; Goldfinger, P. J.

2012-09-01

Context. Since the discovery of the first exoplanet in 1995 around a solar-type star, the interest in exoplanetary systems has kept increasing. Studying exoplanet host stars is of the utmost importance to establish the link between the presence of exoplanets around various types of stars and to understand the respective evolution of stars and exoplanets. Aims: Using the limb-darkened diameter (LDD) obtained from interferometric data, we determine the fundamental parameters of four exoplanet host stars. We are particularly interested in the F4 main-sequence star, θ Cyg, for which Kepler has recently revealed solar-like oscillations that are unexpected for this type of star. Furthermore, recent photometric and spectroscopic measurements with SOPHIE and ELODIE (OHP) show evidence of a quasi-periodic radial velocity of ~150 days. Models of this periodic change in radial velocity predict either a complex planetary system orbiting the star, or a new and unidentified stellar pulsation mode. Methods: We performed interferometric observations of θ Cyg, 14 Andromedae, υ Andromedae and 42 Draconis for two years with VEGA/CHARA (Mount Wilson, California) in several three-telescope configurations. We measured accurate limb darkened diameters and derived their radius, mass and temperature using empirical laws. Results: We obtain new accurate fundamental parameters for stars 14 And, υ And and 42 Dra. We also obtained limb darkened diameters with a minimum precision of ~1.3%, leading to minimum planet masses of Msini = 5.33 ± 0.57, 0.62 ± 0.09 and 3.79 ± 0.29 MJup for 14 And b, υ And b and 42 Dra b, respectively. The interferometric measurements of θ Cyg show a significant diameter variability that remains unexplained up to now. We propose that the presence of these discrepancies in the interferometric data is caused either by an intrinsic variation of the star or an unknown close companion orbiting around it. Based on interferometric observations with the VEGA/CHARA instrument.Appendix A is available in electronic form at http://www.aanda.org

UNIVERSAL TRANSLATOR,

DTIC Science & Technology

all languages with the aid of electron machines is being derived to show how easy it would be to decode even ’dead’ languages, and languages of the foginess of Andromeda , if such a language ever existed. (Author)

The Pan-Andromeda Archaeological Survey: Galaxy Formation In The Near-Field

NASA Astrophysics Data System (ADS)

McConnachie, Alan W.

2009-01-01

The Pan-Andromeda Archaeological Survey (PAndAS) is a Large Program on the Canada-France-Hawaii Telescope. Over the next three years, it will map the entire haloes of M31 and M33 out to projected radii of 150kpc and 50kpc respectively, over an area of more than 320 square degrees, probing a volume of more than 15 million cubic kiloparsecs around M31 and M33, reaching to surface brightness limits of order 32 mags/sq.arcsec. PAndAS will provide the deepest and most complete panorama of galaxy haloes available, and will be used to compare to and constrain cosmological models of galaxy formation over an order of magnitude in halo mass. In this talk I will review the project, discuss its main science goals, and present first results.

Separated fringe packet observations with the Chara Array. II. ω Andromeda, HD 178911, and ξ Cephei

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farrington, C. D.; Ten Brummelaar, T. A.; Turner, N. H.

When observed with optical long-baseline interferometers, components of a binary star that are sufficiently separated produce their own interferometric fringe packets; these are referred to as separated fringe packet (SFP) binaries. These SFP binaries can overlap in angular separation with the regime of systems resolvable by speckle interferometry at single, large-aperture telescopes and can provide additional measurements for preliminary orbits lacking good phase coverage, help constrain elements of already established orbits, and locate new binaries in the undersampled regime between the bounds of spectroscopic surveys and speckle interferometry. In this process, a visibility calibration star is not needed, and themore » SFPs can provide an accurate vector separation. In this paper, we apply the SFP approach to ω Andromeda, HD 178911, and ξ Cephei with the CLIMB three-beam combiner at the CHARA Array. For these systems we determine component masses and parallax of 0.963 ± 0.049 M {sub ☉} and 0.860 ± 0.051 M {sub ☉} and 39.54 ± 1.85 mas for ω Andromeda, for HD 178911 of 0.802 ± 0.055 M {sub ☉} and 0.622 ± 0.053 M {sub ☉} with 28.26 ± 1.70 mas, and masses of 1.045 ± 0.031 M {sub ☉} and 0.408 ± 0.066 M {sub ☉} and 38.10 ± 2.81 mas for ξ Cephei.« less

V405 ANDROMEDA REVISITED

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ribeiro, T.; Baptista, R.; Kafka, S.

We present a multi-epoch time-resolved high-resolution optical spectroscopy study of the short-period (P{sub orb} = 11.2 hr) eclipsing M0V+M5V RS CVn binary V405 Andromeda. By means of indirect imaging techniques, namely Doppler imaging, we study the surface activity features of the M0V component of the system. A modified version of a Doppler imaging code, which takes into account the tidal distortion of the surface of the star, is applied to the multi-epoch data set in order to provide indirect images of the stellar surface. The multi-epoch surface brightness distributions show a low intensity 'belt' of spots at latitudes {+-}40{sup 0}more » and a noticeable absence of high latitude features or polar spots on the primary star of V405 Andromeda. They also reveal slow evolution of the spot distribution over {approx}4 yr. An entropy landscape procedure is used in order to find the set of binary parameters that lead to the smoothest surface brightness distributions. As a result, we find M{sub 1} = 0.51 {+-} 0.03 M{sub sun}, M{sub 2} = 0.21 {+-} 0.01 M{sub sun}, R{sub 1} = 0.71 {+-} 0.01 R{sub sun}, and an inclination i = 65{sup 0} {+-} 1{sup 0}. The resulting systemic velocity is distinct for different epochs, raising the possibility of the existence of a third body in the system.« less

Uridine homeostatic disorder leads to DNA damage and tumorigenesis.

PubMed

Cao, Zhe; Ma, Jun; Chen, Xinchun; Zhou, Boping; Cai, Chuan; Huang, Dan; Zhang, Xuewen; Cao, Deliang

2016-03-28

Uridine is a natural nucleoside precursor of uridine monophosphate in organisms and thus is considered to be safe and is used in a wide range of clinical settings. The far-reaching effects of pharmacological uridine have long been neglected. Here, we report that the homeostatic disorder of uridine is carcinogenic. Targeted disruption (-/-) of murine uridine phosphorylase (UPase) disrupted the homeostasis of uridine and increased spontaneous tumorigenesis by more than 3-fold. Multiple tumors (e.g., lymphoma, hepatoma and lung adenoma) occurred simultaneously in some UPase deficient mice, but not in wild-type mice raised under the same conditions. In the tissue from UPase -/- mice, the 2'-deoxyuridine,5'-triphosphate (dUTP) levels and uracil DNA were increased and p53 was activated with an increased phospho-Ser18 p53 level. Exposing cell lines (e.g., MCF-7, RKO, HCT-8 and NCI-H460) to uridine (10 or 30 µM) led to uracil DNA damage and p53 activation, which in turn triggered the DNA damage response. In these cells, phospho-ATM, phospho-CHK2, and phospho-γH2AX were increased by uridine. These data suggest that uridine homeostatic disorder leads to uracil DNA damage and that pharmacological uridine may be carcinogenic. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Escherichia coli-Derived Uracil Increases the Antibacterial Activity and Growth Rate of Lactobacillus plantarum.

PubMed

Ha, Eun-Mi

2016-05-28

Lactobacillus plantarum (L. plantarum) is a representative probiotic. In particular, L. plantarum is the first commensal bacterium to colonize the intestine of infants. For this reason, the initial settlement of L. plantarum can play an important role in determining an infant's health as well as their eventual health status as an adult. In addition, L. plantarum combats pathogenic infections (such as Escherichia coli (E. coli), one of the early pathogenic colonizers in an unhealthy infant gut) by secreting antimicrobial substances. The aim of this research was to determine how L. plantarum combats E. coli infection and why it is a representative probiotic in the intestine. Consequently, this research observed that E. coli releases uracil. L. plantarum specifically recognizes E. coli-derived uracil, which increases the growth rate and production of antimicrobial substance of L. plantarum. In addition, through the inhibitory activity test, this study postulates that the antimicrobial substance is a protein and can be considered a bacteriocin-like substance. Therefore, this research assumes that L. plantarum exerts its antibacterial ability by recognizing E. coli and increasing its growth rate as a result, and this phenomenon could be one of the reasons for L. plantarum settling in the intestine of infants as a beneficial bacterium.

Secondary Structure Prediction of Protein Constructs Using Random Incremental Truncation and Vacuum-Ultraviolet CD Spectroscopy

PubMed Central

Pukáncsik, Mária; Orbán, Ágnes; Nagy, Kinga; Matsuo, Koichi; Gekko, Kunihiko; Maurin, Damien; Hart, Darren; Kézsmárki, István; Vertessy, Beata G.

2016-01-01

A novel uracil-DNA degrading protein factor (termed UDE) was identified in Drosophila melanogaster with no significant structural and functional homology to other uracil-DNA binding or processing factors. Determination of the 3D structure of UDE is excepted to provide key information on the description of the molecular mechanism of action of UDE catalysis, as well as in general uracil-recognition and nuclease action. Towards this long-term aim, the random library ESPRIT technology was applied to the novel protein UDE to overcome problems in identifying soluble expressing constructs given the absence of precise information on domain content and arrangement. Nine constructs of UDE were chosen to decipher structural and functional relationships. Vacuum ultraviolet circular dichroism (VUVCD) spectroscopy was performed to define the secondary structure content and location within UDE and its truncated variants. The quantitative analysis demonstrated exclusive α-helical content for the full-length protein, which is preserved in the truncated constructs. Arrangement of α-helical bundles within the truncated protein segments suggested new domain boundaries which differ from the conserved motifs determined by sequence-based alignment of UDE homologues. Here we demonstrate that the combination of ESPRIT and VUVCD spectroscopy provides a new structural description of UDE and confirms that the truncated constructs are useful for further detailed functional studies. PMID:27273007

The PUR Experiment on the EXPOSE-R facility: biological dosimetry of solar extraterrestrial UV radiation

NASA Astrophysics Data System (ADS)

Bérces, A.; Egyeki, M.; Fekete, A.; Horneck, G.; Kovács, G.; Panitz, C.

2015-01-01

The aim of our experiment Phage and Uracil Response was to extend the use of bacteriophage T7 and uracil biological dosimeters for measuring the biologically effective ultraviolet (UV) dose in the harsh extraterrestrial radiation conditions. The biological detectors were exposed in vacuum-tightly cases in the European Space Agency (ESA) astrobiological exposure facility attached to the external platform of Zvezda (EXPOSE-R). EXPOSE-R took off to the International Space Station (ISS) in November 2008 and was installed on the External platform of the Russian module Zvezda of the ISS in March 2009. Our goal was to determine the dose-effect relation for the formation of photoproducts (i.e. damage to phage DNA and uracil, respectively). The extraterrestrial solar UV radiation ranges over the whole spectrum from vacuum-UV (λ<200 nm) to UVA (315 nm<λ<400 nm), which causes photolesions (photoproducts) in the nucleic acids/their components either by photoionization or excitation. However, these wavelengths cause not only photolesions but in a wavelength-dependent efficiency the reversion of some photolesions, too. Our biological detectors measured in situ conditions the resultant of both reactions induced by the extraterrestrial UV radiation. From this aspect the role of the photoreversion in the extension of the biological UV dosimetry are discussed.

Primer Extension Mutagenesis Powered by Selective Rolling Circle Amplification

PubMed Central

Huovinen, Tuomas; Brockmann, Eeva-Christine; Akter, Sultana; Perez-Gamarra, Susan; Ylä-Pelto, Jani; Liu, Yuan; Lamminmäki, Urpo

2012-01-01

Primer extension mutagenesis is a popular tool to create libraries for in vitro evolution experiments. Here we describe a further improvement of the method described by T.A. Kunkel using uracil-containing single-stranded DNA as the template for the primer extension by additional uracil-DNA glycosylase treatment and rolling circle amplification (RCA) steps. It is shown that removal of uracil bases from the template leads to selective amplification of the nascently synthesized circular DNA strand carrying the desired mutations by phi29 DNA polymerase. Selective RCA (sRCA) of the DNA heteroduplex formed in Kunkel's mutagenesis increases the mutagenesis efficiency from 50% close to 100% and the number of transformants 300-fold without notable diversity bias. We also observed that both the mutated and the wild-type DNA were present in at least one third of the cells transformed directly with Kunkel's heteroduplex. In contrast, the cells transformed with sRCA product contained only mutated DNA. In sRCA, the complex cell-based selection for the mutant strand is replaced with the more controllable enzyme-based selection and less DNA is needed for library creation. Construction of a gene library of ten billion members is demonstrated with the described method with 240 nanograms of DNA as starting material. PMID:22355397

Rare B Decays with the BaBar Detector

DOE Office of Scientific and Technical Information (OSTI.GOV)

Spanier, Stefane

2001-09-07

The BABAR detector at SLAC's PEP-II storage ring collected a luminosity equivalent data of about 22 fb{sup -1} at the {Upsilon}(4S) resonance during 1999 and 2000. Results on branching fractions of rare and charmless B$-meson decays and first fits for direct CP violation are presented.

Reviews: Software.

ERIC Educational Resources Information Center

Mackenzie, Norma N.; And Others

1988-01-01

Reviews four computer software packages including: "The Physical Science Series: Sound" which demonstrates making waves, speed of sound, doppler effect, and human hearing; "Andromeda" depicting celestial motions in any direction; "Biology Quiz: Humans" covering chemistry, cells, viruses, and human biology; and…

New Deoxyribonucleic Acid Polymerase Induced by Bacillus subtilis Bacteriophage PBS2

PubMed Central

Price, Alan R.; Cook, Sandra J.

1972-01-01

The deoxyribonucleic acid (DNA) of Bacillus subtilis phage PBS2 has been confirmed to contain uracil instead of thymine. PBS2 phage infection of wild-type cells or DNA polymerase-deficient cells results in an increase in the specific activity of DNA polymerase. This induction of DNA polymerase activity is prevented by actinomycin D and chloramphenicol. In contrast to the major B. subtilis DNA polymerase, which prefers deoxythymidine triphosphate (dTTP) to deoxyuridine triphosphate (dUTP), the DNA polymerase in crude extracts of PBS2-infected cells is equally active whether dTTP or dUTP is employed. This phage-induced polymerase may be responsible for the synthesis of uracil-containing DNA during PBS2 phage infection. PMID:4623224

Direction-dependent secondary bonds and their stepwise melting in a uracil-based molecular crystal studied by infrared spectroscopy and theoretical modeling

NASA Astrophysics Data System (ADS)

Szekrényes, Zsolt; Nagy, Péter R.; Tarczay, György; Maggini, Laura; Bonifazi, Davide; Kamarás, Katalin

2018-01-01

Three types of supramolecular interactions are identified in the three crystallographic directions in crystals of 1,4-bis[(1-hexylurac-6-yl) ethynyl]benzene, a uracil-based molecule with a linear backbone. These three interactions, characterized by their strongest component, are: intermolecular double H-bonds along the molecular axis, London dispersion interaction of hexyl chains connecting these linear assemblies, and π - π stacking of the aromatic rings perpendicular to the molecular planes. On heating, two transitions happen, disordering of hexyl chains at 473 K, followed by H-bond melting at 534 K. The nature of the bonds and transitions was established by matrix-isolation and temperature-dependent infrared spectroscopy and supported by theoretical computations.

Permanganate ion oxidations. IX. Manganese intermediates (complexes) in the oxidation of 2,4(1H,3H)-pyrimidinediones.

PubMed

Freeman, F; Karchefski, E M

1976-10-04

Uniquely stable manganese intermediates (complexes) are formed from the permanganate ion oxidation of the 5,6-carbon-carbon double bond in several 2,4(1H,3H)-pyrimidinediones [uracil, (compound 7), 5-methyluracil (thymine, compound 5), and 6-methyluracil (compound 8)]. These manganese complexes, which represent some of the most stable intermediate manganese species observed thus far in the oxidation of carbon-carbon double bonds, show absorption maxima in the 285-296 nm region (epsilon max approximately 4500). The relative reactivities of 6-methyluracil: uracil: thymine are 1: 23 : 194 and the bimolecular oxidation process is characterized by relatively small deltaH++ values and large negative deltaS++ values.

The Age of Planet Host κ Andromedae Based on Interferometric Observations

NASA Astrophysics Data System (ADS)

Jones, Jeremy; White, Russel J.; Quinn, Samuel N.; Baines, Ellyn K.; Boyajian, Tabetha S.; Ireland, Michael; CHARA Team

2016-01-01

We present CHARA Array interferometric observations, obtained with the PAVO beam combiner in the optical (~750 nm), of κ Andromedae. This nearby (51.6 pc) B9/A0V star hosts a directly-imaged low mass companion. Observations made at multiple orientations show the star to be oblate (~15%), consistent with its large projected rotational velocity (vsini = 161.6 ± 22.2 km s-1). The interferometric observations, combined with photometry and the vsini are used to constrain an oblate star model of κ And, enabling us to determine its fundamental properties (e.g., average radius, bolometric luminosity, and equatorial velocity). These stellar properties are compared to the predictions of MESA evolution models to determine an age and mass for the star. The best fit model favors a young age for the system (< 100 Myr), which implies that κ And b has a mass around the limit separating planets and brown dwarfs.

Andromeda's dwarf spheroidals and the universal mass profile

NASA Astrophysics Data System (ADS)

Collins, Michelle; Rich, R. M.; Martin, N.; Ibata, R.; Chapman, S. C.; McConnachie, A. W.; PAndAS

2014-01-01

As the faintest, least massive galaxies we are able to observe, dwarf spheroidal galaxies represent the fundamental galactic unit. Their study in the Milky Way has led to several interesting findings and are helping us to better understand the behaviour of dark matter on the smallest scales. In this talk, I will present work from the ongoing PAndAS spectroscopic follow up survey of Andromeda, focusing on our results for its dwarf galaxy population. I will show that by including the masses measured for these objects in our analysis of the mass profiles of all dwarf galaxies, we are able to demonstrate that the notion of a universal mass profile for these most minute of galaxies is false. I will also identify several interesting objects whose properties defy our expectations, and discuss what these mean for our understanding of the physics governing galactic evolution.

Predicting the Velocity Dispersions of the Dwarf Satellite Galaxies of Andromeda

NASA Astrophysics Data System (ADS)

McGaugh, Stacy S.

2016-05-01

Dwarf Spheroidal galaxies in the Local Group are the faintest and most diffuse stellar systems known. They exhibit large mass discrepancies, making them popular laboratories for studying the missing mass problem. The PANDAS survey of M31 revealed dozens of new examples of such dwarfs. As these systems were discovered, it was possible to use the observed photometric properties to predict their stellar velocity dispersions with the modified gravity theory MOND. These predictions, made in advance of the observations, have since been largely confirmed. A unique feature of MOND is that a structurally identical dwarf will behave differently when it is or is not subject to the external field of a massive host like Andromeda. The role of this "external field effect" is critical in correctly predicting the velocity dispersions of dwarfs that deviate from empirical scaling relations. With continued improvement in the observational data, these systems could provide a test of the strong equivalence principle.

Limits on the Emission of Gamma Rays from M31 (The Andromeda Galaxy) with HAWC

NASA Astrophysics Data System (ADS)

Rubenzahl, Ryan; BenZvi, Segev; Wood, Joshua; HAWC Collaboration

2018-01-01

The detection of the Fermi Bubbles suggests that spiral galaxies such as the Milky Way can undergo active periods. Using gamma-ray observations, we can investigate the possibility that such structures are present in other nearby galaxies. We have analyzed the region around the Andromeda Galaxy (Messier Catalog M31) for signs of bubble-like emission using TeV gamma-ray data recorded by the High-Altitude Water Cherenkov Observatory. We fit a model consisting of two 6 kpc bubbles symmetric about and perpendicular to the M31 galactic plane and assume a power-law distribution for the gamma-ray flux. We compare the emission from these bubble regions to that expected from structures similar to the Fermi Bubbles found in the Milky Way. No significant emission was observed. We report upper limits on the TeV flux from Fermi Bubble structures in M31.

Cartography of Triangulum-Andromeda using SDSS stars

NASA Astrophysics Data System (ADS)

Perottoni, H. D.; Rocha-Pinto, H. J.; Girardi, L.; Balbinot, E.; Santiago, B. X.; Majewski, S. R.; Anders, F.; Da Costa, L.; Maia, M. A. G.

2018-01-01

The outer Galactic halo is home to a number of substructures which still have an uncertain origin, but most likely are remnants of former interactions between the Galaxy and its former satellites. Triangulum-Andromeda (TriAnd) is one of these halo substructures, found as an overdensity of Two Micron All Sky Survey (2MASS) M giants. We analysed the region of TriAnd using photometric data from the Ninth Data Release of Sloan Digital Sky Survey. By comparing the observations with simulations from the TRILEGAL Galactic model, we were able to identify and map several scattered overdensities of main-sequence stars that seem to be associated with TriAnd over a large area covering ∼500 deg2. One of these excesses may represent a new stellar overdensity. We also briefly discuss an alternative hypothesis, according to which TriAnd is one of the troughs of oscillation rings in the Galactic disc.

Dissipative dark matter and the Andromeda plane of satellites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Randall, Lisa; Scholtz, Jakub, E-mail: randall@physics.harvard.edu, E-mail: jscholtz@physics.harvard.edu

We show that dissipative dark matter can potentially explain the large observed mass to light ratio of the dwarf satellite galaxies that have been observed in the recently identified planar structure around Andromeda, which are thought to result from tidal forces during a galaxy merger. Whereas dwarf galaxies created from ordinary disks would be dark matter poor, dark matter inside the galactic plane not only provides a source of dark matter, but one that is more readily bound due to the dark matter's lower velocity. This initial N-body study shows that with a thin disk of dark matter inside themore » baryonic disk, mass-to-light ratios as high as O(90) can be generated when tidal forces pull out patches of sizes similar to the scales of Toomre instabilities of the dark disk. A full simulation will be needed to confirm this result.« less

Image of the Great Nebula in Andromeda, M31 Taken by the High Energy Astronomy Observatory (HEAO)-2

NASA Technical Reports Server (NTRS)

1978-01-01

Both of the High Energy Astronomy Observatory (HEAO) 2/Einstein Observatory imaging devices were used to observe the Great Nebula in Andromeda, M31. This image is a wide field x-ray view of the center region of M31 by the HEAO-2's Imaging Proportional Counter. The HEAO-2, the first imaging and largest x-ray telescope built to date, was capable of producing actual photographs of x-ray objects. Shortly after launch, the HEAO-2 was nicknamed the Einstein Observatory by its scientific experimenters in honor of the centernial of the birth of Albert Einstein, whose concepts of relativity and gravitation have influenced much of modern astrophysics, particularly x-ray astronomy. The HEAO-2, designed and developed by TRW, Inc. under the project management of the Marshall Space Flight Center, was launched aboard an Atlas/Centaur launch vehicle on November 13, 1978.

Unidentified line in x-ray spectra of the Andromeda galaxy and Perseus galaxy cluster.

PubMed

Boyarsky, A; Ruchayskiy, O; Iakubovskyi, D; Franse, J

2014-12-19

We report a weak line at 3.52±0.02  keV in x-ray spectra of the Andromeda galaxy and the Perseus galaxy cluster observed by the metal-oxide-silicon (MOS) and p-n (PN) CCD cameras of the XMM-Newton telescope. This line is not known as an atomic line in the spectra of galaxies or clusters. It becomes stronger towards the centers of the objects; is stronger for Perseus than for M31; is absent in the spectrum of a deep "blank sky" data set. Although for each object it is hard to exclude that the feature is due to an instrumental effect or an atomic line, it is consistent with the behavior of a dark matter decay line. Future (non-)detections of this line in multiple objects may help to reveal its nature.

Spectroscopy and Direct Products: Simpler yet Deeper

ERIC Educational Resources Information Center

Kettle, Sidney F. A.

2010-01-01

When irreducible representations are given in diagrammatic form, it is possible to show direct products pictorially. By giving a similar description of the electric vector associated with a light wave, group-theoretical selection rules (the requirement of a totally symmetric direct product) can also be shown in pictorial form. The [upsilon](CO)…

Thin Planes of Satellites in ΛCDM are not kinematically coherent

NASA Astrophysics Data System (ADS)

Buck, Tobias; Dutton, Aaron A.; Macciò, Andrea V.

2017-03-01

Recently it has been shown by Ibata et al. (2013) that a large fraction of the dwarf satellite galaxies found in the PAndAS survey (McConnachie et al. 2009) and orbiting the Andromeda galaxy are surprisingly aligned in a thin, extended, and kinematically coherent planar structure. The presence of such a structure seems to challenge the current Cold Dark Matter paradigm of structure formation (Ibata et al. 2014, Pawlowski et al. 2014), which predicts a more uniform distribution of satellites around central objects. We show that it is possible to obtain a thin, extended, rotating plane of satellites resembling the one in Andromeda in cosmological collisionless simulations based on this model. Our new 21 high-resolution simulations (see Buck et al. 2015) show a correlation between the formation time of the dark matter halo and the thickness of the plane of satellites. Our simulations have a high incidence of satellite planes as thin, extended, and as rich as the one in Andromeda and with a very coherent kinematic structure when we select early forming haloes. By tracking the formation of the satellites in the plane we show that they have mainly been accreted onto the main object along thin dark matter filaments at high redshift (Dekel et al. 2009, Libeskind et al. 2009, 2011). Our results show that the presence of a thin, extended, rotating plane of satellites is not a challenge for the Cold Dark Matter paradigm, but actually supports one of the predictions of this paradigm related to the presence of filaments of dark matter around galaxies at high redshift.

[Determination of 5 nucleosides components in culture of Paecilomyces hepialid by HPLC].

PubMed

Yang, Dan; Ma, Yun-shu; Huang, Ting-ting; Chen, Cheng

2015-08-01

The concentration of 5 nucleosides, uracil, uridine, guanidine, adenine and adenosine in culture of Paecilomyces hepialid was determined by the developed method of HPLC. The HPLC method was performed on a Waters SunFire C18 (4.6 mm x 250 mm, 5 μm) column with methanol-water gradient elution as the mobile phase. The detection wavelength was 260 nm and the colunmn temperature was controlled at 30 °C. The linear range was 10.00-200.00 mg · L(-1) (r = 0.9994) for uracil, 10.10-202.00 mg · L(-1) (r = 0.9992) for uridine, 10.00-200.00 mg · L(-1) (r = 0.9991) for guanidine, 10.30-206.00 mg · L(-1) (r = 0.9992) for adenine and 10.45-209.00 mg · L(-1) (r = 0.9991) for adenosine, respectively. The RSD of precision was 0.032%, 0.035%, 0.039%, 0.049%, 0.00080%, respectively. The average recoveries of uracil, guanidine, adenine, and adenosine were 97.34%, 99.10%, 101.6%, 98.61% and 100.2% with RSD of 1.3%, 2.1%, 0.96%, 0.95%, and 1.3% respectively. The method showed high sensitivity, good selectivity, linearity and repeatability, which was suitable for the content analysis of 5 nucleosides components in P. hepialid and its extracts.

Effect of molecular environment on the vibrational dynamics of pyrimidine bases as analysed by NIS, optical spectroscopy and quantum mechanical force fields

NASA Astrophysics Data System (ADS)

Ghomi, M.; Aamouche, A.; Cadioli, B.; Berthier, G.; Grajcar, L.; Baron, M. H.

1997-06-01

A complete set of vibrational spectra, obtained from several spectroscopic techniques, i.e. neutron inelastic scattering (NIS), Raman scattering and infrared absorption (IR), has been used in order to assign the vibrational modes of pyrimidine bases (uracil, thymine, cytosine) and their N-deuterated species. The spectra of solid and aqueous samples allowed us to analyse the effects of hydrogen bonding in crystal and in solution. In a first step, to assign the observed vibrational modes, we have resorted to harmonic quantum mechanical force field, calculated at SCF + MP2 level using double-zeta 6-31G and D95V basis sets with non-standard exponents for d-orbital polarisation functions. In order to improve the agreement between the experimental results obtained in condensed phases and the calculated ones based on isolated molecules, the molecular force field has been scaled. In a second step, to estimate the effect of intermolecular interactions on the vibrational dynamics of pyrimidine bases, we have undertaken additional calculations with the density functional theory (DFT) method using B3LYP functionals and polarised 6-31G basis sets. Two theoretical models have been considered: 1. a uracil embedded in a dielectric continuum ( ɛ = 78), and 2. a uracil H-bonded to two water molecules (through N1 and N3 atoms).

De novo pyrimidine nucleotide synthesis mainly occurs outside of plastids, but a previously undiscovered nucleobase importer provides substrates for the essential salvage pathway in Arabidopsis.

PubMed

Witz, Sandra; Jung, Benjamin; Fürst, Sarah; Möhlmann, Torsten

2012-04-01

Nucleotide de novo synthesis is highly conserved among organisms and represents an essential biochemical pathway. In plants, the two initial enzymatic reactions of de novo pyrimidine synthesis occur in the plastids. By use of green fluorescent protein fusions, clear support is provided for a localization of the remaining reactions in the cytosol and mitochondria. This implies that carbamoyl aspartate, an intermediate of this pathway, must be exported and precursors of pyrimidine salvage (i.e., nucleobases or nucleosides) are imported into plastids. A corresponding uracil transport activity could be measured in intact plastids isolated from cauliflower (Brassica oleracea) buds. PLUTO (for plastidic nucleobase transporter) was identified as a member of the Nucleobase:Cation-Symporter1 protein family from Arabidopsis thaliana, capable of transporting purine and pyrimidine nucleobases. A PLUTO green fluorescent protein fusion was shown to reside in the plastid envelope after expression in Arabidopsis protoplasts. Heterologous expression of PLUTO in an Escherichia coli mutant lacking the bacterial uracil permease uraA allowed a detailed biochemical characterization. PLUTO transports uracil, adenine, and guanine with apparent affinities of 16.4, 0.4, and 6.3 μM, respectively. Transport was markedly inhibited by low concentrations of a proton uncoupler, indicating that PLUTO functions as a proton-substrate symporter. Thus, a protein for the absolutely required import of pyrimidine nucleobases into plastids was identified.

Response of biological uv dosimeters to the simulated extraterrestrial uv radiation

NASA Astrophysics Data System (ADS)

Bérces, A.; Rontó, G.; Kerékgyártó, T.; Kovács, G.; Lammer, H.

In the Laboratory polycrystalline uracil thin layer and bacteriophage T7 detectors have been developed for UV dosimetry on the EarthSs surface. Exponential response of the uracil polycrystal has been detected both by absorption spectroscopy and measurements of the refractive index under the influence of terrestrial solar radiation or using UV-C sources. In UV biological dosimetry the UV dose scale is additive starting at a value of zero according to the definition of CIE (Technical Report TC-6-18). The biological dose can be defined by a measured end-effect. In our dosimeters (phage T7 and uracil dosimeter) exposed to natural (terrestrial) UV radiation the proportion of pyrimidin photoproducts among the total photoproducts is smaller than 0.1 and the linear correlation between the biological and physical dose is higher than 0.9. According to the experimental data this linear relationship is often not valid. We observed that UV radiation did not only induce dimerisation but shorter wavelengths caused monomerisation of pyrimidin dimers. Performing the irradiation in oxygen free environment and using a Deuterium lamp as UV source, we could increase monomerisation against dimerisation thus the DNA-based dosimetrySs additivity rule is not fulfilled in these conditions. In this study we will demonstrate those non-linear experiments which constitute the basis of our biological experiments on the International Space Station.

Detection of HIV-1 by digoxigenin-labelled PCR and microtitre plate solution hybridisation assay and prevention of PCR carry-over by uracil-N-glycosylase.

PubMed

King, J A; Ball, J K

1993-09-01

An extremely sensitive and convenient microtiter plate solution hybridisation assay for the detection of HIV-1 PCR products was developed. The PCR product is labelled by direct incorporation of digoxigenin-dUTP and after denaturation is captured by a microtitre plate coated with a streptavidin-linked biotinylated probe. The PCR/probe hybrids are reacted with an alkaline phosphate conjugated anti-digoxigenin antibody and detected using an alkaline phosphatase enzyme amplification system. The use of uracil-N-glycosylase and dUTP instead of dTTP in the PCR is used to effectively control carry-over from previous PCR products. The assay can detect single HIV-1 DNA molecules in a background DNA of 0.75 microgram.

Photoelectron spectrum of valence anions of uracil and first-principles calculations of excess electron binding energies.

PubMed

Bachorz, Rafał A; Klopper, Wim; Gutowski, Maciej; Li, Xiang; Bowen, Kit H

2008-08-07

The photoelectron spectrum (PES) of the uracil anion is reported and discussed from the perspective of quantum chemical calculations of the vertical detachment energies (VDEs) of the anions of various tautomers of uracil. The PES peak maximum is found at an electron binding energy of 2.4 eV, and the width of the main feature suggests that the parent anions are in a valence rather than a dipole-bound state. The canonical tautomer as well as four tautomers that result from proton transfer from an NH group to a C atom were investigated computationally. At the Hartree-Fock and second-order Moller-Plesset perturbation theory levels, the adiabatic electron affinity (AEA) and the VDE have been converged to the limit of a complete basis set to within +/-1 meV. Post-MP2 electron-correlation effects have been determined at the coupled-cluster level of theory including single, double, and noniterative triple excitations. The quantum chemical calculations suggest that the most stable valence anion of uracil is the anion of a tautomer that results from a proton transfer from N1H to C5. It is characterized by an AEA of 135 meV and a VDE of 1.38 eV. The peak maximum is as much as 1 eV larger, however, and the photoelectron intensity is only very weak at 1.38 eV. The PES does not lend support either to the valence anion of the canonical tautomer, which is the second most stable anion, and whose VDE is computed at about 0.60 eV. Agreement between the peak maximum and the computed VDE is only found for the third most stable tautomer, which shows an AEA of approximately -0.1 eV and a VDE of 2.58 eV. This tautomer results from a proton transfer from N3H to C5. The results illustrate that the characteristics of biomolecular anions are highly dependent on their tautomeric form. If indeed the third most stable anion is observed in the experiment, then it remains an open question why and how this species is formed under the given conditions.

Life and the solar uv environment on the early Earth

NASA Astrophysics Data System (ADS)

Bérces, A.; Kovács, G.; Rontó, G.; Lammer, H.; Kargl, G.; Kömle, N.; Bauer, S.

2003-04-01

The solar UV radiation environment on planetary surfaces and within their atmospheres is of importance in a wide range of scientific disciplines. Solar UV radiation is the driving force of chemical and organic evolution and serves also as a constraint in biological evolution. Studies of the solar UV environment of the early Earth 2.0 Gyr to 3.8 Gyr ago suggest that the terrestrial atmosphere was essentially anoxic, resulting in an ozone column abundance insufficient for protecting the planetary surface in the UV-B and the UV-C ranges. Since, short wavelength solar UV radiation in the UV-B ind UV-C range penetrated through the unprotected atmosphere to the surface on early Earth, associated biological consequences may be expected. For DNA-based terrestrial solar UV dosimetry, bacteriophage T7, isolated phage-DNA ind polycrystalline Uracil samples have been used. The effect of solar UV radiation can be measured by detecting the biological-structural consequences of the damage induced by UV photons. We show model calculations for the Biological Effective Dose (BED) rate of Uracil and bacteriophage T7, for various ozone concentrations representing early atmospheric conditions on Earth up to a UV protecting ozone layer comparable to present times. Further, we discuss experimental data which show the photo-reverse effect of Uracil molecules caused by short UV wavelengths. These photoreversion effect highly depend on the wavelength of the radiation. Shorter wavelength UV radiation of about 200 nm is strongly effective in monomerisation, while the longer wavelengths prefer the production of dimerisation. We could demonstrate experimentally, for the case of an Uracil thin-layer that the photo-reaction process of the nucleotides can be both, dimerization and the reverse process: monomerization. These results are important for the study of solar UV exposure on organisms in the terrestrial environment more than 2 Gyr ago where Earth had no UV protecting ozone layer as well as for the search for life on Mars since we can show that biological harmful effects can also be reduced by shorter wavelength UV radiation, which is of importance in reducing DNA damages provoked by wavelengths longer than about 240 nm.

Kinematics of Hα Emitting Stars in Andromeda

NASA Astrophysics Data System (ADS)

Ilango, Megha; Ilango, Anita; Damon, Gabriel; Prichard, Laura; Guhathakurta, Puragra; PHAT Collaboration; SPLASH Collaboration

2017-01-01

Studying emission line stars helps improve our understanding of stellar evolution, types of stars, and their environments. In this study, we analyzed stars exhibiting Hα emission (Hα stars) in the Andromeda Galaxy. We used a combination of spectroscopic and photometric diagnostic methods to remove a population of foreground Milky Way (MW) star contaminants from our data set. The Hα stars were selected from a sample of 5295 spectra from the Spectroscopic and Photometric Landscape of Andromeda’s Stellar Halo (SPLASH) survey and accompanying photometric data from the Panchromatic Hubble Andromeda Treasury (PHAT) survey. Velocities of two classes of Hα stars, main sequence (MS) stars and asymptotic giant branch (AGB) stars, were analyzed through a novel Age-Velocity Difference Correlation (AVDC) method, which utilizes line-of-sight velocity differences (LOSVDs) in order to estimate the age of a rare stellar population. Histograms, weighted means, and weighted standard deviations of the LOSVDs were used to conclude that MS stars are more kinematically coherent than AGB stars, and that Hα stars are kinematically comparable and thus close in age to their non-Hα counterparts. With these results, it can definitively be inferred that mass loss is important in two stages of stellar evolution: massive MS and intermediate mass AGB. We hypothesized that this mass loss could either occur as a normal part of MS and AGB evolution, or that it could be emitted by only a subpopulation of MS and AGB stars throughout their life cycle. Our use of the novel AVDC method sets a precedent for the use of similar methods in predicting the ages of rare stellar subgroups.This research was supported by NASA and the National Science Foundation. Most of this work was carried out by high school students working under the auspices of the Science Internship Program at UC Santa Cruz.

Impact of dronedarone in atrial fibrillation and flutter on stroke reduction.

PubMed

Christiansen, Christine Benn; Torp-Pedersen, Christian; Køber, Lars

2010-04-07

Dronedarone has been developed for treatment of atrial fibrillation (AF) or atrial flutter (AFL). It is an amiodarone analogue but noniodinized and without the same adverse effects as amiodarone. This is a review of 7 studies (DAFNE, ADONIS, EURIDIS, ATHENA, ANDROMEDA, ERATO and DIONYSOS) on dronedarone focusing on efficacy, safety and prevention of stroke. There was a dose-finding study (DAFNE), 3 studies focusing on maintenance of sinus rhythm (ADONIS, EURIDIS and DIONYSOS), 1 study focusing on rate control (ERATO) and 2 studies investigating mortality and morbidity (ANDROMEDA and ATHENA). The target dose for dronedarone was established in the DAFNE study to be 400 mg twice daily. Both EURIDIS and ADONIS studies demonstrated that dronedarone was superior to placebo for maintaining sinus rhythm. However, DIONYSOS found that dronedarone is less efficient at maintaining sinus rhythm than amiodarone. ERATO concluded that dronedarone reduces ventricular rate in patients with chronic AF. The ANDROMEDA study in patients with severe heart failure was discontinued because of increased mortality in dronedarone group. Dronedarone reduced cardiovascular hospitalizations and mortality in patients with AF or AFL in the ATHENA trial. Secondly, according to a post hoc analysis a significant reduction in stroke was observed (annual rate 1.2% on dronedarone vs 1.8% on placebo, respectively [hazard ratio 0.66, confidence interval 0.46 to 0.96, P = 0.027]). In total, 54 cases of stroke occurred in 3439 patients (crude rate 1.6%) receiving dronedarone compared to 76 strokes in 3048 patients on placebo (crude rate 2.5%), respectively. Dronedarone can be used for maintenance of sinus rhythm and can reduce stroke in patients with AF who receive usual care, which includes antithrombotic therapy and heart rate control.

A THOUSAND SHADOWS OF ANDROMEDA: ROTATING PLANES OF SATELLITES IN THE MILLENNIUM-II COSMOLOGICAL SIMULATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ibata, Rodrigo A.; Martin, Nicolas F.; Ibata, Neil G.

In a recent contribution, Bahl and Baumgardt investigated the incidence of planar alignments of satellite galaxies in the Millennium-II simulation and concluded that vast, thin planes of dwarf galaxies, similar to that observed in the Andromeda galaxy (M31), occur frequently by chance in Λ-cold dark matter cosmology. However, their analysis did not capture the essential fact that the observed alignment is simultaneously radially extended, yet thin, and kinematically unusual. With the caveat that the Millennium-II simulation may not have sufficient mass resolution to identify confidently simulacra of low-luminosity dwarf galaxies, we re-examine that simulation for planar structures, using the samemore » method as employed by Ibata et al. on the real M31 satellites. We find that 0.04% of host galaxies display satellite alignments that are at least as extreme as the observations, when we consider their extent, thickness, and number of members rotating in the same sense. We further investigate the angular momentum properties of the co-planar satellites, and find that the median of the specific angular momentum derived from the line-of-sight velocities in the real M31 structure (1.3 × 10{sup 4} km s{sup –1} kpc) is very high compared to systems drawn from the simulations. This analysis confirms that it is highly unlikely that the observed structure around the Andromeda galaxy is due to a chance occurrence. Interestingly, the few extreme systems that are similar to M31 arise from the accretion of a massive sub-halo with its own spatially concentrated entourage of orphan satellites.« less

THE HERSCHEL EXPLOITATION OF LOCAL GALAXY ANDROMEDA (HELGA). VI. THE DISTRIBUTION AND PROPERTIES OF MOLECULAR CLOUD ASSOCIATIONS IN M31

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirk, J. M.; Gear, W. K.; Smith, M. W. L.

In this paper we present a catalog of giant molecular clouds (GMCs) in the Andromeda (M31) galaxy extracted from the Herschel Exploitation of Local Galaxy Andromeda (HELGA) data set. GMCs are identified from the Herschel maps using a hierarchical source extraction algorithm. We present the results of this new catalog and characterize the spatial distribution and spectral energy properties of its clouds based on the radial dust/gas properties found by Smith et al. A total of 326 GMCs in the mass range 10{sup 4}-10{sup 7} M {sub ☉} are identified; their cumulative mass distribution is found to be proportional to Mmore » {sup –2.34}, in agreement with earlier studies. The GMCs appear to follow the same correlation of cloud mass to L {sub CO} observed in the Milky Way. However, comparison between this catalog and interferometry studies also shows that the GMCs are substructured below the Herschel resolution limit, suggesting that we are observing associations of GMCs. Following Gordon et al., we study the spatial structure of M31 by splitting the observed structure into a set of spiral arms and offset rings. We fit radii of 10.3 and 15.5 kpc to the two most prominent rings. We then fit a logarithmic spiral with a pitch angle of 8.°9 to the GMCs not associated with either ring. Last, we comment on the effects of deprojection on our results and investigate the effect different models for M31's inclination will have on the projection of an unperturbed spiral arm system.« less

Dwarf spheroidal satellites of M31. I. Variable stars and stellar populations in Andromeda XIX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cusano, Felice; Clementini, Gisella; Garofalo, Alessia

We present B, V time-series photometry of Andromeda XIX (And XIX), the most extended (half-light radius of 6.'2) of Andromeda's dwarf spheroidal companions, which we observed with the Large Binocular Cameras at the Large Binocular Telescope. We surveyed a 23' × 23' area centered on And XIX and present the deepest color-magnitude diagram (CMD) ever obtained for this galaxy, reaching, at V ∼ 26.3 mag, about one magnitude below the horizontal branch (HB). The CMD shows a prominent and slightly widened red giant branch, along with a predominantly red HB, which extends to the blue to significantly populate the classicalmore » instability strip. We have identified 39 pulsating variable stars, of which 31 are of RR Lyrae type and 8 are Anomalous Cepheids (ACs). Twelve of the RR Lyrae variables and three of the ACs are located within And XIX's half light radius. The average period of the fundamental mode RR Lyrae stars ((P {sub ab}) = 0.62 days, σ = 0.03 days) and the period-amplitude diagram qualify And XIX as an Oosterhoff-Intermediate system. From the average luminosity of the RR Lyrae stars ((V(RR)) = 25.34 mag, σ = 0.10 mag), we determine a distance modulus of (m – M){sub 0} = 24.52 ± 0.23 mag in a scale where the distance to the Large Magellanic Cloud (LMC) is 18.5 ± 0.1 mag. The ACs follow a well-defined Period-Wesenheit (PW) relation that appears to be in very good agreement with the PW relationship defined by the ACs in the LMC.« less

Baryons and their Effects on Planes of Satellites Around Milky Way-Mass Galaxies

NASA Astrophysics Data System (ADS)

Ahmed, Sheehan H.

2017-01-01

Both the Milky Way and Andromeda have thin, coherently rotating planes of satellites. In this study I try to find similar satellite planes around four different Milky Way-mass simulations, each run both as dark matter-only and with baryons included. In all halos I am able to identify a planar configuration that significantly maximizes the number of satellites that are members of a plane. The member satellites that make up this maximum plane are consistently different between the dark matter-only and baryonic versions of the same run. In the baryonic runs, satellites are more likely to be destroyed through interactions with the disk, and substructure tends to infall later. Hence, studying satellite planes in dark matter-only simulations is misleading, because they will be composed of different satellite members than those that would exist if baryons were included. Additionally, baryonic runs tend to have less radially concentrated satellite distributions. Since all planes pass through the center of the galaxy, it is much harder to create a plane containing a large number of satellites from a random distribution if the satellites have a low radial concentration. Andromeda’s low radial satellite concentration is possibly a key reason behind why the plane in Andromeda is highly significant. Despite this, when co-rotation is considered, none of the satellite planes identified for the simulated galaxies are as statistically significant as the observed planes around the Milky Way and Andromeda. I will then show that co-rotation in our satellite planes can be attributed to how the satellites are accreted through filaments from the cosmic web. When two sets of opposing filaments contribute, coherent planes are more likely to form, when there are no well-defined filaments, there is a lack of coherent satellite rotation.

Advanced Networks in Dental Rich Online MEDiA (ANDROMEDA)

NASA Astrophysics Data System (ADS)

Elson, Bruce; Reynolds, Patricia; Amini, Ardavan; Burke, Ezra; Chapman, Craig

There is growing demand for dental education and training not only in terms of knowledge but also skills. This demand is driven by continuing professional development requirements in the more developed economies, personnel shortages and skills differences across the European Union (EU) accession states and more generally in the developing world. There is an excellent opportunity for the EU to meet this demand by developing an innovative online flexible learning platform (FLP). Current clinical online systems are restricted to the delivery of general, knowledge-based training with no easy method of personalization or delivery of skill-based training. The PHANTOM project, headed by Kings College London is developing haptic-based virtual reality training systems for clinical dental training. ANDROMEDA seeks to build on this and establish a Flexible Learning Platform that can integrate the haptic and sensor based training with rich media knowledge transfer, whilst using sophisticated technologies such as including service-orientated architecture (SOA), Semantic Web technologies, knowledge-based engineering, business intelligence (BI) and virtual worlds for personalization.

NASA's Hubble Shows Milky Way is Destined for Head-On Collision

NASA Image and Video Library

2017-12-08

NASA image release Thursday, May 31, 2012 To view a video from this Hubble release go to: www.flickr.com/photos/gsfc/7309212940 Caption: This illustration shows a stage in the predicted merger between our Milky Way galaxy and the neighboring Andromeda galaxy, as it will unfold over the next several billion years. In this image, representing Earth's night sky in 3.75 billion years, Andromeda (left) fills the field of view and begins to distort the Milky Way with tidal pull. Credit: NASA; ESA; Z. Levay and R. van der Marel, STScI; T. Hallas; and A. Mellinger To read more go to: www.nasa.gov/mission_pages/hubble/science/milky-way-colli... NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

BV Observations of the Eclipsing Binary XZ Andromedae at the EKU Observatory (Abstract)

NASA Astrophysics Data System (ADS)

Ciocca, M.

2018-06-01

(Abstract only) XZ Andromedae is an Algol-type eclipsing binary. It has been the subject of many observing campaigns, all aiming at determining the mechanisms responsible for its period variation. Results have been inconsistent and the period changes did not seem to have a common explanation between authors. The latest of these observations (Y.-G. Yang, New Astronomy, 25, 2013, 109) concluded that a third companion may be present and that mass transfer from the secondary to the primary companion may be occurring. We performed measurements in the Bessel band passes B and V, measured several times of minimum and developed a model, using binary maker 3, that matches well the observations and includes mass transfer by adding a hot spot on the primary (the cool, more evolved companion) and a "cold" spot on the secondary (hotter, but smaller companion). The data were collected at the EKU observatory with a Celestron C14 telescope and a SBIG STL-6303 camera.

DOES THE OOSTERHOFF DICHOTOMY EXIST IN THE ANDROMEDA GALAXY? I. THE CASE OF G11

DOE Office of Scientific and Technical Information (OSTI.GOV)

Contreras Ramos, Rodrigo; Clementini, Gisella; Federici, Luciana, E-mail: rodrigo.contreras@oabo.inaf.it, E-mail: gisella.clementini@oabo.inaf.it, E-mail: luciana.federici@oabo.inaf.it

We present the first evidence that Oosterhoff type II globular clusters exist in the Andromeda galaxy (M31). On the basis of time-series photometry of the moderately metal-poor ([Fe/H] {approx}-1.6 dex) M31 globular cluster G11, obtained with the Wide Field Planetary Camera 2 on board the Hubble Space Telescope, we detected and derived periods for 14 RR Lyrae stars, of which five are found to lie inside the cluster tidal radius. They include three fundamental-mode (RRab) and two first-overtone (RRc) pulsators, with average periods (P{sub ab} ) = 0.70 days, and (P{sub c} ) = 0.40 days, respectively. These mean periodsmore » and the position of the cluster variable stars in the period-amplitude and period-metallicity diagrams all suggest that G11 is likely to be an Oosterhoff type II globular cluster. This appears to be in agreement with the general behavior of Milky Way globular clusters with similar metallicity and horizontal branch morphology.« less

Observational studies of the symbiotic stars. III High-dispersion IUE and H-alpha observations of EG Andromedae

NASA Technical Reports Server (NTRS)

Oliversen, N. A.; Anderson, C. M.; Slovak, M. H.; Stencel, R. E.

1985-01-01

High-dispersion IUE and optical spectra are presented for the symbiotic star EG Andromedae (HD 4174). Remarkable emission-line strength and profile variations are confirmed for the S IV, O IV, C IV, and He II ultraviolet lines as well as H-alpha. Accurate cross-correlation absorption-line velocities determined from Ti I, Ca I, and Fe I features convincingly demonstrate that EG And is a single-lined spectroscopic binary. The velocity curve suggests that the photometric ephemeris reported by Smith in 1980 should be revised by a redefinition of zero phase by about 0.08 of a period. The primary of the system may be similar to the central star of a planetary nebula embedded in a dense nebula with a mild stellar wind. The behavior of the emission lines is interpreted to indicate that the primary and its surrounding nebula suffer a partial eclipse by the cool giant secondary.

Resonant electron capture by orotic acid molecules

NASA Astrophysics Data System (ADS)

Muftakhov, M. V.; Shchukin, P. V.; Khatymov, R. V.

2017-09-01

Resonant electron attachment by orotic acid molecules (6-COOH-uracil) are studied in the energy range of 0-14 eV via negative ion mass spectrometry. Molecular ions, whose lifetimes relative to electron autodetachment are found to be 300 μs are recorded in the region of thermal electron energies; they form in the valence state through a vibration-excited resonance mechanism. Unlike unsubstituted uracil, most dissociative processes occur in the low-energy region of <4 eV and are due to carboxylic anions. An absolute cross section of 2.4 × 10-17 cm2 is found for the most intense fragment ions [M-H]- at an output energy of 1.33 eV. The kinetics of decarboxylation is considered for these ions. This could be a model reaction for the last stage of uridine monophosphate biosynthesis.

Surface-Enhanced Hyper-Raman Spectra of Adenine, Guanine, Cytosine, Thymine, and Uracil

PubMed Central

2016-01-01

Using picosecond excitation at 1064 nm, surface-enhanced hyper-Raman scattering (SEHRS) spectra of the nucleobases adenine, guanine, cytosine, thymine, and uracil with two different types of silver nanoparticles were obtained. Comparing the SEHRS spectra with SERS data from the identical samples excited at 532 nm and with known infrared spectra, the major bands in the spectra are assigned. Due to the different selection rules for the one- and two-photon excited Raman scattering, we observe strong variation in relative signal strengths of many molecular vibrations obtained in SEHRS and SERS spectra. The two-photon excited spectra of the nucleobases are found to be very sensitive with respect to molecule–nanoparticle interactions. Using both the SEHRS and SERS data, a comprehensive vibrational characterization of the interaction of nucleobases with silver nanostructures can be achieved. PMID:28077982

Electrophilic 5-Substituted Uracils as Potential Radiosensitizers: A Density Functional Theory Study.

PubMed

Makurat, Samanta; Chomicz-Mańka, Lidia; Rak, Janusz

2016-08-18

Although 5-bromo-2'-deoxyuridine (5BrdU) possesses significant radiosensitizing power in vitro, clinical studies do not confirm any advantages of radiotherapy employing 5BrdU. This situation calls for a continuous search for efficient radiosensitizers. Using the proposed mechanism of radiosensitization by 5BrdU, we propose a series of 5-substituted uracils, XYU, that should undergo efficient dissociative electron attachment. The DFT-calculated thermodynamic and kinetic data concerning the XYU degradations induced by electron addition suggests that some of the scrutinized derivatives have much better characteristics than 5BrdU itself. Synthesis of these promising candidates for radiosensitizers, followed by studies of their radiosensitizing properties in DNA context, and ultimately in cancer cells, are further steps to confirm their potential applicability in anticancer treatment. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Mineral catalysis of the formation of the phosphodiester bond in aqueous solution: The possible role of montmorillonite clays

NASA Astrophysics Data System (ADS)

Ferris, James P.; Ertem, Gözen; Kamaluddin; Agarwal, Vipin; Hua, Lu Lin

The binding of adenosine to Na+-montmorillonite 22A is greater than 5'-AMP, at neutral pH. Adenine derivatives bind more strongly to the clay than the corresponding uracil derivatives. These data are consistent with the protonation of the adenine by the acidic clay surface and a cationic binding of the protonated ring to the anionic clay surface. Other forces must be operative in the binding of uracil derivatives to the clay since the uracil ring system is not basic. The reaction of the 5'-AMP with water soluble carbodiimide in the presence of Na+-montmorillonite results in the formation of 2',5'-pApA (18.9%), 3',5'-pApA (11%), and AppA (4.8%). When poly(U) is used in place of the clay the product yields are 2',5',-pApA (15.5%), 3',5'-pApA (3.7%) and AppA (14.9%). The cyclic nucleotide, c(pA)2 is also formed when poly(U) is used. AppA is the principal reaction product when neither clay nor poly(U) is present in the reaction mixture. When 2'-deoxy-5'-AMP reacts with carbodiimide in the presence of Na+-montmorillonite 22A the products are dpApA (4.8%), dAppApA (4.5%) and dAppA (17.4%). Cyclic 3',5'-dAMP is the main product (14%) of the reaction of 2'-deoxy-3'-AMP.

Uracil-ftorafur: an oral fluoropyrimidine active in colorectal cancer.

PubMed

Sulkes, A; Benner, S E; Canetta, R M

1998-10-01

This review describes the early clinical development of uracil-ftorafur (UFT), an oral fluoropyrimidine, designed in 1978 by adding uracil to ftorafur. The review focuses on the treatment of colorectal cancer and summarizes the Japanese experience and the phase I and II trials performed in the United States and Europe. Clinical trials of UFT published in the Western world have included 581 patients with colorectal cancer. UFT has been administered in these trials as a single agent or biomodulated by leucovorin (LV). UFT was administered daily in split doses for periods that ranged from 14 to 28 days. The activity of oral UFT in large-bowel cancer when administered with oral LV (approximately 50 mg/dose) has resulted in objective response rates of approximately 40%. Response rates of approximately 25% (range, 17% to 39%) were reported when UFT was administered as a single agent or with lower doses of LV. The highest dose-intensities of UFT are achieved with 28-day schedules of administration. The maximum-tolerated dose (MTD) of UFT with this schedule, when administered concomitantly with oral LV 150 mg daily, is 300 mg/m2 daily. The dose-limiting toxicity (DLT) of UFT has generally been diarrhea. Other commonly described toxicities include nausea and vomiting, fatigue, and stomatitis. Myelosuppression occurs infrequently. Typically, hand-foot syndrome and neurologic toxicity are lacking. UFT is a fluoropyrimidine active in colorectal cancer. The oral route of administration and improved safety profile represent important advantages over both conventional and infusional fluorouracil (5-FU) regimens.

De Novo Pyrimidine Nucleotide Synthesis Mainly Occurs outside of Plastids, but a Previously Undiscovered Nucleobase Importer Provides Substrates for the Essential Salvage Pathway in Arabidopsis[W

PubMed Central

Witz, Sandra; Jung, Benjamin; Fürst, Sarah; Möhlmann, Torsten

2012-01-01

Nucleotide de novo synthesis is highly conserved among organisms and represents an essential biochemical pathway. In plants, the two initial enzymatic reactions of de novo pyrimidine synthesis occur in the plastids. By use of green fluorescent protein fusions, clear support is provided for a localization of the remaining reactions in the cytosol and mitochondria. This implies that carbamoyl aspartate, an intermediate of this pathway, must be exported and precursors of pyrimidine salvage (i.e., nucleobases or nucleosides) are imported into plastids. A corresponding uracil transport activity could be measured in intact plastids isolated from cauliflower (Brassica oleracea) buds. PLUTO (for plastidic nucleobase transporter) was identified as a member of the Nucleobase:Cation-Symporter1 protein family from Arabidopsis thaliana, capable of transporting purine and pyrimidine nucleobases. A PLUTO green fluorescent protein fusion was shown to reside in the plastid envelope after expression in Arabidopsis protoplasts. Heterologous expression of PLUTO in an Escherichia coli mutant lacking the bacterial uracil permease uraA allowed a detailed biochemical characterization. PLUTO transports uracil, adenine, and guanine with apparent affinities of 16.4, 0.4, and 6.3 μM, respectively. Transport was markedly inhibited by low concentrations of a proton uncoupler, indicating that PLUTO functions as a proton-substrate symporter. Thus, a protein for the absolutely required import of pyrimidine nucleobases into plastids was identified. PMID:22474184

Pyrimidine Biosynthesis in Lactobacillus leichmannii

PubMed Central

Hutson, Judith Y.; Downing, Mancourt

1968-01-01

Tracer studies of pyrimidine biosynthesis in Lactobacillus leichmannii (ATCC 7830) indicated that, while aspartate is utilized in the usual manner, the guanido carbon of arginine, rather than carbon dioxide, is utilized as a pyrimidine precursor. The guanido carbon of arginine also contributes, to some extent, to the carbon dioxide pool utilized for purine biosynthesis. The enzyme of the first reaction leading from arginine to pyrimidines, arginine deiminase, was investigated in crude bacterial extracts. It was inhibited by thymidylic acid and purine ribonucleotides, and to a lesser extent by purine deoxynucleotides and deoxycytidylic acid. Under the assay conditions employed, a number of nucleotides had no effect on the enzyme activity of the aspartate transcarbamylase of L. leichmannii. Growth of the cells in media containing uracil, compared to growth in media without uracil, resulted in a four- to fivefold decrease in the concentrations of aspartate transcar-bamylase and dihydroorotase and a twofold increase in the concentration of arginine deiminase, as estimated from specific enzyme activity in crude extracts of the cells. A small increase in specific enzyme activity of ornithine transcarbamylase and carbamate kinase was also observed in extracts obtained from cells grown on uracil. No appreciable change in concentration of any of the five enzymes studied was detected when the cells were grown in media containing thymidine or guanylic acid. A hypothetical scheme which suggests a relationship between the control of purine and pyrimidine biosynthesis in this bacterium and which is consistent with the experimental results obtained is presented. PMID:5686000

The pyrimidine nucleotide biosynthetic pathway modulates production of biofilm determinants in Escherichia coli.

PubMed

Garavaglia, Marco; Rossi, Elio; Landini, Paolo

2012-01-01

Bacteria are often found in multicellular communities known as biofilms, which constitute a resistance form against environmental stresses. Extracellular adhesion and cell aggregation factors, responsible for bacterial biofilm formation and maintenance, are tightly regulated in response to physiological and environmental cues. We show that, in Escherichia coli, inactivation of genes belonging to the de novo uridine monophosphate (UMP) biosynthetic pathway impairs production of curli fibers and cellulose, important components of the bacterial biofilm matrix, by inhibiting transcription of the csgDEFG operon, thus preventing production of the biofilm master regulator CsgD protein. Supplementing growth media with exogenous uracil, which can be converted to UMP through the pyrimidine nucleotide salvage pathway, restores csgDEFG transcription and curli production. In addition, however, exogenous uracil triggers cellulose production, particularly in strains defective in either carB or pyrB genes, which encode enzymes catalyzing the first steps of de novo UMP biosynthesis. Our results indicate the existence of tight and complex links between pyrimidine metabolism and curli/cellulose production: transcription of the csgDEFG operon responds to pyrimidine nucleotide availability, while cellulose production is triggered by exogenous uracil in the absence of active de novo UMP biosynthesis. We speculate that perturbations in the UMP biosynthetic pathways allow the bacterial cell to sense signals such as starvation, nucleic acids degradation, and availability of exogenous pyrimidines, and to adapt the production of the extracellular matrix to the changing environmental conditions.

Update on Angles and Sides of the CKM Unitarity Triangle from BaBar

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cheng, Chih-hsiang; /Caltech

2011-11-14

We report several recent updates from the BABAR Collaboration on the matrix elements |V{sub cb}|, |V{sub ub}|, and |V{sub td}| of the Cabibbo-Kobayashi-Maskawa (CKM) quark-mixing matrix, and the angles {beta} and {alpha} of the unitarity triangle. Most results presented here are using the full BABAR {Upsilon}(4S) data set.

Iterative direct inversion: An exact complementary solution for inverting fault-slip data to obtain palaeostresses

NASA Astrophysics Data System (ADS)

Mostafa, Mostafa E.

2005-10-01

The present study shows that reconstructing the reduced stress tensor (RST) from the measurable fault-slip data (FSD) and the immeasurable shear stress magnitudes (SSM) is a typical iteration problem. The result of direct inversion of FSD presented by Angelier [1990. Geophysical Journal International 103, 363-376] is considered as a starting point (zero step iteration) where all SSM are assigned constant value ( λ=√{3}/2). By iteration, the SSM and RST update each other until they converge to fixed values. Angelier [1990. Geophysical Journal International 103, 363-376] designed the function upsilon ( υ) and the two estimators: relative upsilon (RUP) and (ANG) to express the divergence between the measured and calculated shear stresses. Plotting individual faults' RUP at successive iteration steps shows that they tend to zero (simulated data) or to fixed values (real data) at a rate depending on the orientation and homogeneity of the data. FSD of related origin tend to aggregate in clusters. Plots of the estimators ANG versus RUP show that by iteration, labeled data points are disposed in clusters about a straight line. These two new plots form the basis of a technique for separating FSD into homogeneous clusters.

Ways to Bring a "Far Out" Subject SPACE BIOLOGY Into the Classroom.

ERIC Educational Resources Information Center

Lamb, Janice

This document describes a grade 10-12 biology course designed to increase student interest by introducing topics in space biology including: the book "Andromeda Strain"; weightlessness; centrifuge; cosmic radiation; space research; origins of life; extraterrestrial life; and the Mars Viking Mission. (SL)

Bimetric MOND gravity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Milgrom, Mordehai

2009-12-15

A new relativistic formulation of MOND is advanced, involving two metrics as independent degrees of freedom: the MOND metric g{sub {mu}}{sub {nu}}, to which alone matter couples, and an auxiliary metric g-circumflex{sub {mu}}{sub {nu}}. The main idea hinges on the fact that we can form tensors from the difference of the Levi-Civita connections of the two metrics, C{sub {beta}}{sub {gamma}}{sup {alpha}}={gamma}{sub {beta}}{sub {gamma}}{sup {alpha}}-{gamma}-circumflex{sub {beta}}{sub {gamma}}{sup {alpha}}, and these act like gravitational accelerations. In the context of MOND, we can form dimensionless 'acceleration' scalars and functions thereof (containing only first derivatives) from contractions of a{sub 0}{sup -1}C{sub {beta}}{sub {gamma}}{sup {alpha}}.more » I look at a subclass of bimetric MOND theories governed by the action I=-(16{pi}G){sup -1}{integral}[{beta}g{sup 1/2}R+{alpha}g-circumflex{sup 1/2}R-circumflex-2(gg-circumflex){sup 1/4}f({kappa})a{sub 0}{sup 2} M({upsilon}-tilde/a{sub 0}{sup 2})]d{sup 4}x+I{sub M}(g{sub {mu}}{sub {nu}},{psi}{sub i})+I-circumflex{sub M}(g-circumflex{sub {mu}}{sub {nu}},{chi}{sub i}), with {upsilon}-tilde as a scalar quadratic in the C{sub {beta}}{sub {gamma}}{sup {alpha}}, {kappa}=(g/g-circumflex){sup 1/4}, I{sub M} as the matter action, and allow for the existence of twin matter that couples to g-circumflex{sub {mu}}{sub {nu}} alone. Thus, gravity is modified not by modifying the elasticity of the space-time in which matter lives, but by the interaction between that space-time and the auxiliary one. In particular, I concentrate on the interesting and simple choice {upsilon}-tilde{proportional_to}g{sup {mu}}{sup {nu}}(C{sub {mu}}{sub {lambda}}{sup {gamma}}C{sub {nu}}{sub {gamma}}{sup {lambda}}-C{sub {mu}}{sub {nu}}{sup {gamma}}C{sub {lambda}}{sub {gamma}}{sup {lambda}}). This theory introduces only one new constant, a{sub 0}; it tends simply to general relativity (GR) in the limit a{sub 0}{yields}0 and to a phenomenologically valid MOND theory in the nonrelativistic limit. The theory naturally gives MOND and 'dark energy' effects from the same term in the action, both controlled by the MOND constant a{sub 0}. In regards to gravitational lensing by nonrelativistic systems-a holy grail for relativistic MOND theories-the theory predicts that the same potential that controls massive-particle motion also dictates lensing in the same way as in GR: Lensing and massive-particle probing of galactic fields will require the same 'halo' of dark matter to explain the departure of the present theory from GR. This last result can be modified with other choices of {upsilon}-tilde, but lensing is still enhanced and MOND-like, with an effective logarithmic potential.« less

Cepheus

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

(abbrev. Cep, gen. Cephei; area 588 sq. deg.) A northern constellation which lies between Draco and Cassiopeia, and culminates at midnight in late August. It is named after King Cepheus, husband of Queen Cassiopeia and father of Andromeda in Greek mythology. Its brightest stars were cataloged by Ptolemy (c. AD 100-175) in the Almagest....

Proceedings of the American Journalism Historians' Association Conference (Roanoke, Virginia, October 6-8, 1994). Part II.

ERIC Educational Resources Information Center

American Journalism Historians' Association.

The second part of the proceedings of this conference of journalism historians contains the following 21 papers: "The First Information Revolution" (Irving Fang); "The 'Andromeda Strain' Phenomenon: Mutating Systems and International Communication Policy" (Eliza Tanner); "Guns or Butter?: Black Press Editorial Policy…

Deep Space Inquiry

ERIC Educational Resources Information Center

Rapp, Steve

2003-01-01

In this article, the author describes a student-centered research project he introduced to his students. In this research project, his students used images collected by telescopes at Kitt Peak National Optical Observatory (KPNO) to look for novas in the Andromeda Galaxy. This project grew out of the author's experience during a Teachers As Leaders…

KSC-97pc558

NASA Image and Video Library

1997-03-31

Comet Hale-Bopp was photographed in the constellation Andromeda by George Shelton, photographer for The Bionetics Corp., at 8:14 p.m. on March 31, 1997, from Merritt Island, Florida, close to the Kennedy Space Center. During this 24-hour period, Comet Hale-Bopp is making its closest approach to the Sun

Designing of MIP based QCM sensor having thymine recognition sites based on biomimicking DNA approach.

PubMed

Diltemiz, S Emir; Hür, D; Ersöz, A; Denizli, A; Say, R

2009-11-15

Quartz crystal microbalance (QCM) sensors coated with molecular imprinted polymers (MIP) have been developed for the determination of thymine. In this method, methacryloylamidoadenine (MA-Ade) have used as a new monomer and thymine template for inspiration of DNA nucleobases interaction. The thymine can be simultaneously hydrogen binding to MA-Ade and fit into the shape-selective cavities. Thus, the interaction between nucleobases has an effect on the binding ability of the QCM sensors. The binding affinity of the thymine imprinted sensors has investigated by using the Langmuir isotherm. The thymine imprinted QCM electrodes have shown homogeneous binding sites for thymine (K(a): 1.0 x 10(5)M(-1)) while heterogeneous binding sites for uracil. On the other hand, recognition selectivity of the QCM sensor based on thymine imprinted polymer toward to uracil, ssDNA and ssRNA has been reported in this work.

Synthesis and biological evaluation of 3-(2-aminoethyl) uracil derivatives as gonadotropin-releasing hormone (GnRH) receptor antagonists.

PubMed

Kim, Seon-Mi; Lee, Minhee; Lee, So Young; Lee, Soo-Min; Kim, Eun Jeong; Kim, Jae Sun; Ann, Jihyae; Lee, Jiyoun; Lee, Jeewoo

2018-02-10

We investigated a series of uracil analogues by introducing various substituents on the phenyl ring of the N-3 aminoethyl side chain and evaluated their antagonistic activity against human gonadotropin-releasing hormone (GnRH) receptors. Analogues with substituents at the ortho or meta position demonstrated potent in vitro antagonistic activity. Specifically, the introduction of a 2-OMe group enhanced nuclear factor of activated T-cells (NFAT) inhibition up to 6-fold compared to the unsubstituted analogue. We identified compound 12c as a highly potent GnRH antagonist with moderate CYP inhibition. Compound 12c showed potent and prolonged LH suppression after a single dose was orally administered in castrated monkeys compared to a known antagonist, Elagolix. We believe that our SAR study offers useful insights to design GnRH antagonists as a potential treatment option for endometriosis. Copyright © 2018 Elsevier Masson SAS. All rights reserved.

Complete remission of platinium refractory ovarian cancer with second line tegafur with uracil monotherapy: a case report.

PubMed

Camci, Celalettin; Sevinc, Alper; Aslan, Yilmaz; Kalender, Mehmet Emin; Buyukberber, Suleyman

2009-03-01

Ovarian cancer remains one of the most lethal of all gynecologic malignancies, accounting for more deaths than cervical and uterine cancer combined. Advanced ovarian cancer is a chemosensitive tumor and most patients initially respond to platinum-based combination chemotherapy with response rates of about 70%, including a high proportion of complete responses. However, despite aggressive surgery and chemotherapy, more than 80% of patients will relapse and will then be treated with second line chemotherapy with objective responses in about 20% of patients and even lower percentages of complete responses. We observed a 42-months of complete response with administration of 1-[2-tetrahydrofuryl]-5-fluorouracil mixed with uracil (UFT) in patient with platinium refractory ovarian cancer. We report a complete remission of platinium refractory epithelial ovarian cancer with UFT monotherapy that was not reported previously.

Crystallization and preliminary X-ray data analysis of β-alanine synthase from Drosophila melanogaster

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lundgren, Stina; Andersen, Birgit; Piškur, Jure

2007-10-01

β-Alanine synthase catalyzes the last step in the reductive degradation pathway for uracil and thymine. Crystals of the recombinant enzyme from D. melanogaster belong to space group C2. Diffraction data to 3.3 Å resolution were collected and analyzed. β-Alanine synthase catalyzes the last step in the reductive degradation pathway for uracil and thymine, which represents the main clearance route for the widely used anticancer drug 5-fluorouracil. Crystals of the recombinant enzyme from Drosophila melanogaster, which is closely related to the human enzyme, were obtained by the hanging-drop vapour-diffusion method. They diffracted to 3.3 Å at a synchrotron-radiation source, belong tomore » space group C2 (unit-cell parameters a = 278.9, b = 95.0, c = 199.3 Å, β = 125.8°) and contain 8–10 molecules per asymmetric unit.« less

Anaerobic biodegradation of halogenated and nonhalogenated N-, s-, and o-heterocyclic compounds in aquifer slurries

USGS Publications Warehouse

Adrian, Neal R.; Suflita, Joseph M.

1994-01-01

The fate of several halogenated and nonhalogenated heterocyclic compounds in anoxic aquifer slurries was investigated Substrate depletion and methane formation were monitored in serum bottle incubations by HPLC and GC, respectively Pyridine, pyrimidine, thiophene, and furan were not mineralized following an 11-month incubation, but the corresponding carboxylated or oxygenated compounds were That is, >74% of the theoretically expected amount of methane was recovered from nicotinic acid, uracil, or 2-furoic acid Chlorinated derivatives, like 2 chloro- or 6-chloronicotinic acid, as well as 4 chloro- and 5-chlorouracil resisted mineralization However, 5-bromouracil was reductively dehalogenated to stoichiometric amounts of uracil, whereas 2-chloropyrimidine was metabolized to a more polar unidentified compound that resisted further anaerobic biodegradation Microorganisms acclimated to 5-bromouracil were unable to transform 4 chloro or 5 chlorouracil These findings illustrate how the structure of heterocyclic contaminants influences their susceptibility to anaerobic decay

The intracellular distribution and heterogeneity of ribonucleic acid in starfish oocytes.

PubMed

EDSTROM, J E; GRAMPP, W; SCHOR, N

1961-12-01

A study has been made of the content and composition of RNA in cytoplasm, nucleoplasm, and nucleoli from growing oocytes of the starfish Asterias rubens. The determinations were carried out, using ultramicrochemical methods, on units isolated by microdissection from fixed sections. Macrochemical and interferometric control experiments show that RNA can be quantitatively evaluated in this way. The results show that the growing oocyte represents a system in which the relations between the quantities of nucleolar, nucleoplasmic, and cytoplasmic RNA undergo great changes. These changes are continuous for nucleolar and cytoplasmic RNA so that their amounts may be predicted from the size of the cell. Nucleoplasmic RNA, on the other hand, shows great variations among different cells, independent of cell size. Purine-pyrimidine analyses show that each cell component contains an RNA which differs significantly from that of the other two. Cytoplasmic and nucleolar RNA are closely related, the only difference being a slightly higher guanine/uracil quotient for the nucleolar RNA. They are both of the usual tissue RNA type, i.e., they show a preponderance of guanine and cytosine over adenine and uracil. Nucleoplasmic RNA deviates grossly from the RNA of the other two components. Here the concentrations of adenine and uracil are higher than those of guanine and cytosine, respectively. This RNA consequently shows some resemblance to the general type of animal DNA although the purine/pyrimidine ratio is far from unity. Our data favor a nucleolar origin for the stable part of the ribosomal RNA and a nucleoplasmic one for the unstable part (the messenger RNA).

Auxotrophic Mutations Reduce Tolerance of Saccharomyces cerevisiae to Very High Levels of Ethanol Stress

PubMed Central

Swinnen, Steve; Goovaerts, Annelies; Schaerlaekens, Kristien; Dumortier, Françoise; Verdyck, Pieter; Souvereyns, Kris; Van Zeebroeck, Griet; Foulquié-Moreno, María R.

2015-01-01

Very high ethanol tolerance is a distinctive trait of the yeast Saccharomyces cerevisiae with notable ecological and industrial importance. Although many genes have been shown to be required for moderate ethanol tolerance (i.e., 6 to 12%) in laboratory strains, little is known of the much higher ethanol tolerance (i.e., 16 to 20%) in natural and industrial strains. We have analyzed the genetic basis of very high ethanol tolerance in a Brazilian bioethanol production strain by genetic mapping with laboratory strains containing artificially inserted oligonucleotide markers. The first locus contained the ura3Δ0 mutation of the laboratory strain as the causative mutation. Analysis of other auxotrophies also revealed significant linkage for LYS2, LEU2, HIS3, and MET15. Tolerance to only very high ethanol concentrations was reduced by auxotrophies, while the effect was reversed at lower concentrations. Evaluation of other stress conditions showed that the link with auxotrophy is dependent on the type of stress and the type of auxotrophy. When the concentration of the auxotrophic nutrient is close to that limiting growth, more stress factors can inhibit growth of an auxotrophic strain. We show that very high ethanol concentrations inhibit the uptake of leucine more than that of uracil, but the 500-fold-lower uracil uptake activity may explain the strong linkage between uracil auxotrophy and ethanol sensitivity compared to leucine auxotrophy. Since very high concentrations of ethanol inhibit the uptake of auxotrophic nutrients, the active uptake of scarce nutrients may be a major limiting factor for growth under conditions of ethanol stress. PMID:26116212

Anti-herpesvirus activity profile of 4'-thioarabinofuranosyl purine and uracil nucleosides and activity of 1-beta-D-2'-fluoro-4'-thioarabinofuranosyl guanine and 2,6-diaminopurine against clinical isolates of human cytomegalovirus.

PubMed

Machida, H; Ashida, N; Miura, S; Endo, M; Yamada, K; Kitano, K; Yoshimura, Y; Sakata, S; Ijichi, O; Eizuru, Y

1998-08-01

Newly synthesized 4'-thio- and 2'-fluoro-4'-thioarabinofuranosyl purine and pyrimidine nucleosides were compared with the corresponding 4'-oxo type arabinosyl nucleosides for anti-herpesvirus and anti-cell proliferative potencies. 4'-Thioarabinosyl- and 2'-fluoro-4'-thioarabinofuranosyl 5-substituted uracils had selective antiviral activities, but were not superior to 4'-oxo nucleosides, except for the activity of 5-ethyl-uracil 4'-thio nucleosides against herpes simplex virus. Furthermore, 4'-thio substituted derivatives of sorivudine (BV-araU) and related compounds, and 2'-fluoro-5-methyl-arabinosyluracil exhibited reduced activity against varicella-zoster virus compared with the parent compounds. The 4'-thioarabinosyluracils, except for 5-methyluracil derivatives, were inactive against human cytomegalovirus (HCMV). 4'-Thioarabinofuranosyl guanine and diaminopurine had the most potent anti-HCMV and anti-proliferative activities, whereas arabinosyl guanine and diaminopurine had only marginal antiviral activity. 2'-Fluoro-4'-thioarabinofuranosyl derivatives of guanine (4'-thio-FaraG) and 2,6-diaminopurine (4'-thio-FaraDAP), however, had particularly high activity against all herpesviruses tested with anti-proliferative activity equipotent to that of arabinosyl guanine and diaminopurine. 4'-Thio- and 2'-fluoro-4'-thioarabinofuranosyladenines exhibited biological activities similar to that of arabinosyladenine. Both 4'-thio-FaraG and 4'-thio-FaraDAP had a 6-fold lower ED50 than ganciclovir against clinical isolates of HCMV. A ganciclovir-resistant isolate, obtained from a patient who had received long-term ganciclovir-treatment, was susceptible to 4'-thio-FaraG and 4'-thio-FaraDAP.

Simultaneous quantification and splenocyte-proliferating activities of nucleosides and bases in Cervi cornu Pantotrichum

PubMed Central

Zong, Ying; Wang, Yu; Li, Hang; Li, Na; Zhang, Hui; Sun, Jiaming; Niu, Xiaohui; Gao, Xiaochen

2014-01-01

Background: Cervi Cornu Pantotrichum has been a well known traditional Chinese medicine, which is young horn of Cervus Nippon Temminck (Hualurong: HLR). At present, the methods used for the quality control of Cervi Cornu Pantotrichum show low specificity. Objective: To describe a holistic method based on chemical characteristics and splenocyte-proliferating activities to evaluate the quality of HLR. Materials and Methods: The nucleosides and bases from HLR were identified by high performance liquid chromatography electrospray ionization mass spectrometry (HPLC-ESI-MS), and six of them were chosen to be used for simultaneous HPLC quantification according to the results of proliferation of mouse splenocytes in vitro. Results: In this study, eight nucleosides and bases have been identified. In addition, uracil, hypoxanthine, uridine, inosine, guanosine, and adenosine were chosen to be used for simultaneous HPLC quantification. Simultaneous quantification of these six substances was performed on ten groups of HLR under the condition of a TIANHE Kromasil C18 column (5 μm, 4.6 mm × 250 mm i.d.) and a gradient elution of water and acetonitrile. Of the ten groups, HLR displayed the highest total nucleoside contents (TNC, sum of adenosine and uracil, 0.412 mg/g) with the strongest splenocyte-proliferating activities. Conclusion: These results suggest that TNC (such as particularly highly contained adenosine and uracil) in HLR has a certain correlation with the activity of splenocyte-proliferating, and it may be used as a quality control for HLR. This comprehensive method could be applied to other traditional Chinese medicines to ameliorate their quality control. PMID:25422536

Deletion of the Uracil Permease Gene Confers Cross-Resistance to 5-Fluorouracil and Azoles in Candida lusitaniae and Highlights Antagonistic Interaction between Fluorinated Nucleotides and Fluconazole

PubMed Central

Gabriel, Frédéric; Sabra, Ayman; El-Kirat-Chatel, Sofiane; Pujol, Sophie; Fitton-Ouhabi, Valérie; Brèthes, Daniel; Dementhon, Karine; Accoceberry, Isabelle

2014-01-01

We characterized two additional membrane transporters (Fur4p and Dal4p) of the nucleobase cation symporter 1 (NCS1) family involved in the uptake transport of pyrimidines and related molecules in the opportunistic pathogenic yeast Candida lusitaniae. Simple and multiple null mutants were constructed by gene deletion and genetic crosses. The function of each transporter was characterized by supplementation experiments, and the kinetic parameters of the uptake transport of uracil were measured using radiolabeled substrate. Fur4p specifically transports uracil and 5-fluorouracil. Dal4p is very close to Fur4p and transports allantoin (glyoxyldiureide). Deletion of the FUR4 gene confers resistance to 5-fluorouracil as well as cross-resistance to triazoles and imidazole antifungals when they are used simultaneously with 5-fluorouracil. However, the nucleobase transporters are not involved in azole uptake. Only fluorinated pyrimidines, not pyrimidines themselves, are able to promote cross-resistance to azoles by both the salvage and the de novo pathway of pyrimidine synthesis. A reinterpretation of the data previously obtained led us to show that subinhibitory doses of 5-fluorocytosine, 5-fluorouracil, and 5-fluorouridine also were able to trigger resistance to fluconazole in susceptible wild-type strains of C. lusitaniae and of different Candida species. Our results suggest that intracellular fluorinated nucleotides play a key role in azole resistance, either by preventing azoles from targeting the lanosterol 14-alpha-demethylase or its catalytic site or by acting as a molecular switch for the triggering of efflux transport. PMID:24867971

Pyrimidine Biosynthesis Is Not an Essential Function for Trypanosoma brucei Bloodstream Forms

PubMed Central

Munday, Jane C.; Donachie, Anne; Morrison, Liam J.; de Koning, Harry P.

2013-01-01

Background African trypanosomes are capable of both pyrimidine biosynthesis and salvage of preformed pyrimidines from the host, but it is unknown whether either process is essential to the parasite. Methodology/Principal Findings Pyrimidine requirements for growth were investigated using strictly pyrimidine-free media, with or without single added pyrimidine sources. Growth rates of wild-type bloodstream form Trypanosoma brucei brucei were unchanged in pyrimidine-free medium. The essentiality of the de novo pyrimidine biosynthesis pathway was studied by knocking out the PYR6-5 locus that produces a fusion product of orotate phosphoribosyltransferase (OPRT) and Orotidine Monophosphate Decarboxylase (OMPDCase). The pyrimidine auxotroph was dependent on a suitable extracellular pyrimidine source. Pyrimidine starvation was rapidly lethal and non-reversible, causing incomplete DNA content in new cells. The phenotype could be rescued by addition of uracil; supplementation with uridine, 2′deoxyuridine, and cytidine allowed a diminished growth rate and density. PYR6-5−/− trypanosomes were more sensitive to pyrimidine antimetabolites and displayed increased uracil transport rates and uridine phosphorylase activity. Pyrimidine auxotrophs were able to infect mice although the infection developed much more slowly than infection with the parental, prototrophic trypanosome line. Conclusions/Significance Pyrimidine salvage was not an essential function for bloodstream T. b. brucei. However, trypanosomes lacking de novo pyrimidine biosynthesis are completely dependent on an extracellular pyrimidine source, strongly preferring uracil, and display reduced infectivity. As T. brucei are able to salvage sufficient pyrimidines from the host environment, the pyrimidine biosynthesis pathway is not a viable drug target, although any interruption of pyrimidine supply was lethal. PMID:23505454

Ultraviolet Irradiation of Pyrimidine in Interstellar Ice Analogs: Formation and Photo-Stability of Nucleobases

NASA Technical Reports Server (NTRS)

Nuevo, Michel; Milam, Stefanie N.; Sandford, Scott A.; Elsila, Jamie E.; Dworkin, Jason P.

2010-01-01

Astrochemistry laboratory experiments recently showed that molecules of prebiotic interest can potentially form in space, as supported by the detection of amino acids in organic residues formed by the UV photolysis of ices simulating interstellar and cometary environments (H2O, CO, CO2, CH3OH, NH3, etc.). Although the presence of amino acids in the interstellar medium (ISM) is still under debate, experiments and the detection of amino acids in meteorites both support a scenario in which prebiotic molecules could be of extraterrestrial origin, before they are delivered to planets by comets, asteroids, and interplanetary dust particles. Nucleobases, the informational subunits of DNA and RNA, have also been detected in meteorites, although they have not yet been observed in the ISM. Thus, these molecules constitute another family of prebiotic compounds that can possibly form via abiotical processes in astrophysical environments. Nucleobases are nitrogen-bearing cyclic aromatic species with various functional groups attached, which are divided into two classes: pyrimidines (uracil, cytosine, and thymine) and purines (adenine and guanine). In this work, we study how UV irradiation affects pyrimidine mixed in interstellar ice analogs (H2O, NH3, CH3OH). In particular, we show that the UV irradiation of H2O:pyrimidine mixtures leads to the production of oxidized compounds including uracil, and show that both uracil and cytosine are formed upon irradiation of H2O:NH3:pyrimidine mixtures. We also study the photostability of pyrimidine and its photoproducts formed during these experiments.

Conformational transitions of uracil transporter UraA from Escherichia coli: a molecular simulation study.

PubMed

Yang, Liu; Yang, Lianjuan; Yu, Hui; Liu, Lu; Zhao, Xi; Huang, Xuri

2017-10-26

The Escherichia coli uracil/H + symporter UraA, known as the representative nucleobase/cation symporter 2(NCS2) protein, gets involved in several crucial physiological processes for most living organisms on Earth, such as the uptake of nucleobases and transport of vitamin C. Some experiments proposed a working model to explain proton-coupling and uracil transporting process of UraA on the basis of the crystal structure of NCS2 protein, but the details of conformational changes remained unknown. Thus, in order to make clear conformational changes caused by the protonation and deprotonation process of some conserved proton-coupled residues, the molecular dynamics simulation was used to study the conformation of UraA complexes in different protonation states. The results demonstrated that the protonation of residue Glu241 and Glu290 resulted in the whole conformational transition from the inward-open to the outward-open state. It can be concluded that Glu290 was crucial in a network of hydrogen-bonds in the middle of the core domain involving another essential residue, mainly including tyr288 in TM8, Tyr342, Ser338 in TM12, and the network of hydrogen-bonds was the key to maintain the stability of conformation. Protonation of Glu290 affects the stability of network of H-bond and changed the domains TM3 TM10 TM12. Thus, Glu290 may play a vital role as a 'proton trigger' that affects spatial structural of amino and residues near substrate binding side leading to an outward-open conformation transition.

Radio Map of the Andromeda Galaxy.

PubMed

Macleod, J M

1964-07-24

The University of Illinois radio telescope has resolved the 610.5 Mcy/sec disk component of radio emission from the large galaxy M 31 into several discrete concentrations. In two cases, these correspond to the crossing of the optical major axis by spiral arms. A spur of emission extends southeast from the galaxy near the minor axis.

The Age of the Directly Imaged Planet Host Star κ Andromedae Determined from Interferometric Observations

NASA Astrophysics Data System (ADS)

Jones, Jeremy; White, R. J.; Quinn, S.; Ireland, M.; Boyajian, T.; Schaefer, G.; Baines, E. K.

2016-05-01

κ Andromedae, an early-type star that hosts a directly imaged low-mass companion, is expected to be oblate due to its rapid rotational velocity (v sin I = ˜162 km s-1). We observed the star with the CHARA Array’s optical beam combiner, PAVO, measuring its size at multiple orientations and determining its oblateness. The interferometric measurements, combined with photometry and this v sin I value are used to constrain an oblate star model that yields the fundamental properties of the star and finds a rotation speed that is ˜85% of the critical rate and a low inclination of ˜30°. Three modeled properties (the average radius, bolometric luminosity, and equatorial velocity) are compared to MESA evolution models to determine an age and mass for the star. In doing so, we determine an age for the system of {47}-40+27 Myr. Based on this age and previous measurements of the companion’s temperature, the BHAC15 evolution models imply a mass for the companion of {22}-9+8 M J.

Far-Ultraviolet Observations of the Circumstellar Gas in the 2 Andromedae System

NASA Astrophysics Data System (ADS)

Cheng, K.-P.; Neff, James E.

2003-02-01

The A5 star β Pictoris is a possible young planetary system and has the best-studied circumstellar disk. Our visible and ultraviolet observations of 2 Andromedae indicated that this A3 star has β Pictoris-like gas infall. We present the far-ultraviolet spectrum (905-1195 Å) of 2 And we obtained with the NASA-CNES-CSA Far Ultraviolet Spectroscopic Explorer (FUSE). Unlike β Pic, 2 And's FUSE spectrum does not show strong chromospheric emission lines from C III and O VI. However, 2 And's FUSE spectrum contains many nonphotospheric lines that allow us to probe the circumstellar gas. For example, between 1120 and 1140 Å, we detected several Fe III absorption lines arising from hyperfine levels of ground state, which cannot be formed in the interstellar medium. These lines are good diagnostics of the circumstellar gas. We also detected circumstellar Fe II, Cr III, Mn III, and O I (1D) lines. The simultaneous presence of these species suggests that the circumstellar environment of 2 And could include regions with different temperatures and densities.

Velocity anti-correlation of diametrically opposed galaxy satellites in the low-redshift Universe.

PubMed

Ibata, Neil G; Ibata, Rodrigo A; Famaey, Benoit; Lewis, Geraint F

2014-07-31

Recent work has shown that the Milky Way and the Andromeda galaxies both possess the unexpected property that their dwarf satellite galaxies are aligned in thin and kinematically coherent planar structures. It is interesting to evaluate the incidence of such planar structures in the larger galactic population, because the Local Group may not be a representative environment. Here we report measurements of the velocities of pairs of diametrically opposed satellite galaxies. In the local Universe (redshift z < 0.05), we find that satellite pairs out to a distance of 150 kiloparsecs from the galactic centre are preferentially anti-correlated in their velocities (99.994 per cent confidence level), and that the distribution of galaxies in the larger-scale environment (out to distances of about 2 megaparsecs) is strongly clumped along the axis joining the inner satellite pair (>7σ confidence). This may indicate that planes of co-rotating satellites, similar to those seen around the Andromeda galaxy, are ubiquitous, and their coherent motion suggests that they represent a substantial repository of angular momentum on scales of about 100 kiloparsecs.

The immunoglobulin heavy chain locus of the duck. Genomic organization and expression of D, J, and C region genes.

PubMed

Lundqvist, M L; Middleton, D L; Hazard, S; Warr, G W

2001-12-14

The region of the duck IgH locus extending from upstream of the proximal diversity (D) segment to downstream of the constant gene cluster has been cloned and mapped. A sequence contig of 48,796 base pairs established that the organization of the genes is D-J(H)-mu-alpha-upsilon. No evidence for a functional homologue (or remnant) of a delta gene was found. The alpha gene is in inverted transcriptional orientation; class switch to IgA expression thus requires inversion of the approximately 27-kilobase pair region that includes both mu and alpha genes. The secreted forms of duck alpha and mu are each encoded by 4 constant region exons, and the hydrophobic C-terminal regions of the membrane receptor forms of alpha and mu are encoded by one and two transmembrane exons, respectively. Putative switch (S) regions were identified for duck mu and upsilon by comparison with chicken Smu and Supsilon sequences and for duck alpha by comparison with mouse Salpha. The duck IgH locus is rich in complex variable number tandem repeats, which occupy approximately 60% of the sequenced region, and occur at a much higher frequency in the IgH locus than in other sequenced regions of the duck genome.

Molecular dynamics studies of polyethylene oxide and polyethylene glycol: hydrodynamic radius and shape anisotropy.

PubMed

Lee, Hwankyu; Venable, Richard M; Mackerell, Alexander D; Pastor, Richard W

2008-08-01

A revision (C35r) to the CHARMM ether force field is shown to reproduce experimentally observed conformational populations of dimethoxyethane. Molecular dynamics simulations of 9, 18, 27, and 36-mers of polyethylene oxide (PEO) and 27-mers of polyethylene glycol (PEG) in water based on C35r yield a persistence length lambda = 3.7 A, in quantitative agreement with experimentally obtained values of 3.7 A for PEO and 3.8 A for PEG; agreement with experimental values for hydrodynamic radii of comparably sized PEG is also excellent. The exponent upsilon relating the radius of gyration and molecular weight (R(g) proportional, variantM(w)(upsilon)) of PEO from the simulations equals 0.515 +/- 0.023, consistent with experimental observations that low molecular weight PEG behaves as an ideal chain. The shape anisotropy of hydrated PEO is 2.59:1.44:1.00. The dimension of the middle length for each of the polymers nearly equals the hydrodynamic radius R(h)obtained from diffusion measurements in solution. This explains the correspondence of R(h) and R(p), the pore radius of membrane channels: a polymer such as PEG diffuses with its long axis parallel to the membrane channel, and passes through the channel without substantial distortion.

A measurement of B0 meson properties using partially reconstructed B0 to D*- pi+ and B0 tp D*- lepton+ nu-lepton decays with the BABAR detector

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barrera, Barbara

The two B{sup 0} decay processes B{sup 0} {yields} D*{sup -} {pi}{sup +} and B{sup 0} {yields} D*{sup -} {ell}{sup +} {nu}{sub {ell}} have been studied by means of a partial reconstruction technique using a data sample collected with the BABAR detector at the PEP-II storage ring. To increase statistics, only the soft {pi}{sup -} from the decay D*{sup -} {yields} {pi}{sup -} D{sup 0} was used in association with either an oppositely-charged high-momentum pion or lepton. Events were then identified by exploiting the constraints from the simple kinematics of {Upsilon}(4S) decays. A clear signature is obtained in each case.more » The position of the B{sup 0} decay point was obtained from the reconstructed {pi}{sup +} ({ell}{sup +}){pi}{sup -} vertex. The position of the other {bar B}{sup 0} in the event was also determined. Taking advantage of the boost given to the {Upsilon}(4S) system by the asymmetric beam energies of PEP-II, the lifetime of the B{sup 0} meson has been measured from the separation distance between the two vertices along the beam direction.« less

Results from the Splash Survey: Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo

NASA Astrophysics Data System (ADS)

Guhathakurta, Puragra; SPLASH Collaboration

2009-01-01

Detailed studies of nearby galaxies provide vital clues about their formation and evolutionary history. This "fossil record" approach is complementary to direct look-back studies of distant galaxies. Our Galaxy and the Andromeda spiral galaxy (M31) have long been cornerstones in the former category. M31 provides an external perspective on a large galaxy similar to our own and yet is close enough to allow detailed studies of individual stars. In my talk, I will present results from the SPLASH collaboration: Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo. The collective data set from this large international team includes thousands of Keck/DEIMOS spectra of individual red giant branch stars, ground-based deep wide-field imaging and photometry with KPNO/Mosaic, CFHT/MegaCam, and Subaru/Suprime-Cam, and ultra-deep pencil-beam probes with HST/ACS imaging reaching below the main-sequence turnoff. Our recent discovery of an extended stellar halo in M31 (R > 150 kpc) shows that most previous studies of its spheroid have been sampling its inner bulge-like spheroidal component, not its halo. In my talk I will touch upon several related topics related to the general theme of hierarchical galaxy formation including: M31's global structure and subcomponents (halo, bulge/central bar, and disk), stellar dynamics, statistical properties of substructure, detailed chemical abundance measurements, detailed forensic reconstruction of recent collision events, dwarf satellites as tracers and building blocks of larger galaxies, and empirical constraints on the tangential motion of the M31 system. I will also discuss recent results on the chemical abundance of the lowest luminosity Galactic satellites (recently discovered by SDSS) and implications for the formation of the Milky Way halo. This research was supported by funds from the National Science Foundation, NASA, and the Institute for Geophysics and Planetary Physics.

Strengthening the Connection Between Space and Society: A Comparative Analysis of Supernovae Distribution in the Andromeda Galaxy for Secondary School Students

NASA Astrophysics Data System (ADS)

Borders, Kareen; Mendez, B.; Borders, K.; Thaller, M.; Plecki, M.; Usuda, K.

2011-05-01

In order to prepare students in grades 4-12 for a global workforce, NASA supports science, technology, engineering, and math (STEM) immersion education for secondary students. Secondary schools, through the NASA Explorer School program, the Spitzer Space Telescope, the National Optical Astronomy Observatory, and the WISE (Wide Field Infrared Survey Explorer) Telescope Teacher Ambassador program, offer authentic research opportunities for students. Spitzer and WISE studied the sky in infrared light. Among the objects WISE studied are asteroids, the coolest and dimmest stars, and the most luminous galaxies. The lessons learned from the NASA Explorer School program and Spitzer and WISE teacher and student programs can be applied to other programs, engaging students in authentic research experiences by using data from space-borne and earth-based observatories such Kitt Peak Observatory. Several ground based telescopes at Kitt Peak Observatory study visible light from objects such as supernovae. Utilizing a student research immersion philosophy along with data analysis skills learned from the Spitzer and WISE student research programs, an analysis of supernovae distribution with respect to location in the Andromeda galaxy was conducted using images of the Andromeda galaxy taken from the WIYN 0.9 meter telescope on Kitt Peak. A comparison was made between the 12 outer fields (spiral arms) and the 4 inner fields (central bulge). Novae were found by "blinking” images of each field throughout 100 epochs of data. Blinking is a technique used to compare images of fields and noting brightness (via x,y coordinates) in one field that is not visible in the same field during a different epoch. Although the central bulge was expected to contain more supernovae due to stellar density and proximity of stars to each other, analysis of data indicates that the there is also a concentration of supernovae that appeared in outer regions. WISE Telescope funding is gratefully acknowledged.

Andromeda (M31) optical and infrared disk survey. I. Insights in wide-field near-IR surface photometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sick, Jonathan; Courteau, Stéphane; Cuillandre, Jean-Charles

We present wide-field near-infrared J and K{sub s} images of the Andromeda Galaxy (M31) taken with WIRCam at the Canada-France-Hawaii Telescope as part of the Andromeda Optical and Infrared Disk Survey. This data set allows simultaneous observations of resolved stars and near-infrared (NIR) surface brightness across M31's entire bulge and disk (within R = 22 kpc), permitting a direct test of the stellar composition of near-infrared light in a nearby galaxy. Here we develop NIR observation and reduction methods to recover a uniform surface brightness map across the 3° × 1° disk of M31 with 27 WIRCam fields. Two sky-targetmore » nodding strategies are tested, and we find that strictly minimizing sky sampling latency cannot improve background subtraction accuracy to better than 2% of the background level due to spatio-temporal variations in the NIR skyglow. We fully describe our WIRCam reduction pipeline and advocate using flats built from night-sky images over a single night, rather than dome flats that do not capture the WIRCam illumination field. Contamination from scattered light and thermal background in sky flats has a negligible effect on the surface brightness shape compared to the stochastic differences in background shape between sky and galaxy disk fields, which are ∼0.3% of the background level. The most dramatic calibration step is the introduction of scalar sky offsets to each image that optimizes surface brightness continuity. Sky offsets reduce the mean surface brightness difference between observation blocks from 1% to <0.1% of the background level, though the absolute background level remains statistically uncertain to 0.15% of the background level. We present our WIRCam reduction pipeline and performance analysis to give specific recommendations for the improvement of NIR wide-field imaging methods.« less

METALLICITY EVOLUTION OF THE SIX MOST LUMINOUS M31 DWARF SATELLITES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ho, Nhung; Geha, Marla; Tollerud, Erik J.

We present global metallicity properties, metallicity distribution functions (MDFs), and radial metallicity profiles for the six most luminous M31 dwarf galaxy satellites: M32, NGC 205, NGC 185, NGC 147, Andromeda VII, and Andromeda II. The results presented are the first spectroscopic MDFs for dwarf systems surrounding a host galaxy other than the Milky Way (MW). Our sample consists of individual metallicity measurements for 1243 red giant branch member stars spread across these six systems. We determine metallicities based on the strength of the Ca II triplet lines using the empirical calibration of Carrera et al., which is calibrated over the metallicity range –4 < [Fe/H] <+0.5. We findmore » that these M31 satellites lie on the same luminosity-metallicity relationship as the MW dwarf satellites. We do not find a trend between the internal metallicity spread and galaxy luminosity, contrary to previous studies. The MDF widths of And II and And VII are similar to the MW dwarf spheroidal (dSph) satellites of comparable luminosity; however, our four brightest M31 dwarf satellites are more luminous than any of the MW dSphs and have broader MDFs. The MDFs of our six M31 dwarf satellites are consistent with the leaky box model of chemical evolution, although our metallicity errors allow a wide range of evolution models. We find a significant radial gradient in metallicity in only two of our six systems, NGC 185 and Andromeda II, and flat radial metallicity gradients in the rest of our sample with no observed correlation between rotational support and radial metallicity gradients. Although the average properties and radial trends of the M31 dwarf galaxies agree with their MW counterparts at similar luminosity, the detailed MDFs are different, particularly at the metal-rich end.« less

Long-term uvb forecasting on the basis of spectral and broad-band measurements

NASA Astrophysics Data System (ADS)

Bérces, A.; Gáspár, S.; Kovács, G.; Rontó, G.

2003-04-01

The stratospheric ozone concentration has been investigated by several methods, e.g. determinations of the ozone layer using a network of ground based spectrophotometers, of the Dobson and the Brewer types. These data indicate significant decrease of the ozone layer superimposed by much larger seasonal changes at specific geographical locations. The stratospheric ozone plays an important role in the attenuation of the short-wavelength components of the solar spectrum, thus the consequence of the decreased ozone layer is an increased UVB level. Various pyranometers measuring the biological effect of environmental UV radiation have been constructed with spectral sensitivities close to the erythema action spectrum defined by the CIE. Using these erythemally weighted broad-band instruments to detect the tendency of UVB radiation controversial data have been found. To quantify the biological risk due to environmental UV radiation it is reasonable to weight the solar spectrum by the spectral sensitivity of the DNA damage taking into account the high DNA-sensitivity at the short wavelength range of the solar spectrum. Various biological dosimeters have been developed e.g. polycrystalline uracil thin layer. These are usually simple biological systems or components of them. Their UV sensitivity is a consequence of the DNA-damage. Biological dosimeters applied for long-term monitoring are promising tools for the assessment of the biological hazard. Simultaneous application of uracil dosimeters and Robertson-Berger meters can be useful to predict the increasing tendency of the biological UV exposure more precisely. The ratio of the biologically effective dose obtained by the uracil dosimeter (a predominately UVB effect) and by the Robertson-Berger meter (insensitive to changes below 300 nm) is a sensitive method for establishing changes in UVB irradiance due to changes in ozone layer.

Effects of seven chemicals on DNA damage in the rat urinary bladder: a comet assay study.

PubMed

Wada, Kunio; Yoshida, Toshinori; Takahashi, Naofumi; Matsumoto, Kyomu

2014-07-15

The in vivo comet assay has been used for the evaluation of DNA damage and repair in various tissues of rodents. However, it can give false-positive results due to non-specific DNA damage associated with cell death. In this study, we examined whether the in vivo comet assay can distinguish between genotoxic and non-genotoxic DNA damage in urinary bladder cells, by using the following seven chemicals related to urinary bladder carcinogenesis in rodents: N-butyl-N-(4-hydroxybutyl)nitrosamine (BBN), glycidol, 2,2-bis(bromomethyl)-1,3-propanediol (BMP), 2-nitroanisole (2-NA), benzyl isothiocyanate (BITC), uracil, and melamine. BBN, glycidol, BMP, and 2-NA are known to be Ames test-positive and they are expected to produce DNA damage in the absence of cytotoxicity. BITC, uracil, and melamine are Ames test-negative with metabolic activation but have the potential to induce non-specific DNA damage due to cytotoxicity. The test chemicals were administered orally to male Sprague-Dawley rats (five per group) for each of two consecutive days. Urinary bladders were sampled 3h after the second administration and urothelial cells were analyzed by the comet assay and subjected to histopathological examination to evaluate cytotoxicity. In the urinary bladders of rats treated with BBN, glycidol, and BMP, DNA damage was detected. In contrast, 2-NA induced neither DNA damage nor cytotoxicity. The non-genotoxic chemicals (BITC, uracil, and melamine) did not induce DNA damage in the urinary bladders under conditions where some histopathological changes were observed. The results indicate that the comet assay could distinguish between genotoxic and non-genotoxic chemicals and that no false-positive responses were obtained. Copyright © 2014 Elsevier B.V. All rights reserved.

Multiple Decay Mechanisms and 2D‐UV Spectroscopic Fingerprints of Singlet Excited Solvated Adenine‐Uracil Monophosphate

PubMed Central

Li, Quansong; Giussani, Angelo; Segarra‐Martí, Javier; Nenov, Artur; Rivalta, Ivan; Voityuk, Alexander A.; Mukamel, Shaul; Roca‐Sanjuán, Daniel

2016-01-01

Abstract The decay channels of singlet excited adenine uracil monophosphate (ApU) in water are studied with CASPT2//CASSCF:MM potential energy calculations and simulation of the 2D‐UV spectroscopic fingerprints with the aim of elucidating the role of the different electronic states of the stacked conformer in the excited state dynamics. The adenine 1La state can decay without a barrier to a conical intersection with the ground state. In contrast, the adenine 1Lb and uracil S(U) states have minima that are separated from the intersections by sizeable barriers. Depending on the backbone conformation, the CT state can undergo inter‐base hydrogen transfer and decay to the ground state through a conical intersection, or it can yield a long‐lived minimum stabilized by a hydrogen bond between the two ribose rings. This suggests that the 1Lb, S(U) and CT states of the stacked conformer may all contribute to the experimental lifetimes of 18 and 240 ps. We have also simulated the time evolution of the 2D‐UV spectra and provide the specific fingerprint of each species in a recommended probe window between 25 000 and 38 000 cm−1 in which decongested, clearly distinguishable spectra can be obtained. This is expected to allow the mechanistic scenarios to be discerned in the near future with the help of the corresponding experiments. Our results reveal the complexity of the photophysics of the relatively small ApU system, and the potential of 2D‐UV spectroscopy to disentangle the photophysics of multichromophoric systems. PMID:27113273

Ubiquitous water-soluble molecules in aquatic plant exudates determine specific insect attraction.

PubMed

Sérandour, Julien; Reynaud, Stéphane; Willison, John; Patouraux, Joëlle; Gaude, Thierry; Ravanel, Patrick; Lempérière, Guy; Raveton, Muriel

2008-10-08

Plants produce semio-chemicals that directly influence insect attraction and/or repulsion. Generally, this attraction is closely associated with herbivory and has been studied mainly under atmospheric conditions. On the other hand, the relationship between aquatic plants and insects has been little studied. To determine whether the roots of aquatic macrophytes release attractive chemical mixtures into the water, we studied the behaviour of mosquito larvae using olfactory experiments with root exudates. After testing the attraction on Culex and Aedes mosquito larvae, we chose to work with Coquillettidia species, which have a complex behaviour in nature and need to be attached to plant roots in order to obtain oxygen. This relationship is non-destructive and can be described as commensal behaviour. Commonly found compounds seemed to be involved in insect attraction since root exudates from different plants were all attractive. Moreover, chemical analysis allowed us to identify a certain number of commonly found, highly water-soluble, low-molecular-weight compounds, several of which (glycerol, uracil, thymine, uridine, thymidine) were able to induce attraction when tested individually but at concentrations substantially higher than those found in nature. However, our principal findings demonstrated that these compounds appeared to act synergistically, since a mixture of these five compounds attracted larvae at natural concentrations (0.7 nM glycerol, <0.5 nM uracil, 0.6 nM thymine, 2.8 nM uridine, 86 nM thymidine), much lower than those found for each compound tested individually. These results provide strong evidence that a mixture of polyols (glycerol), pyrimidines (uracil, thymine), and nucleosides (uridine, thymidine) functions as an efficient attractive signal in nature for Coquillettidia larvae. We therefore show for the first time, that such commonly found compounds may play an important role in plant-insect relationships in aquatic eco-systems.

Integrating DNA structure switch with branched hairpins for the detection of uracil-DNA glycosylase activity and inhibitor screening.

PubMed

Zhu, Jing; Hao, Qijie; Liu, Yi; Guo, Zhaohui; Rustam, Buayxigul; Jiang, Wei

2018-03-01

The detection of uracil-DNA glycosylase (UDG) activity is pivotal for its biochemical studies and the development of drugs for UDG-related diseases. Here, we explored an integrated DNA structure switch for high sensitive detection of UDG activity. The DNA structure switch containing two branched hairpins was employed to recognize UDG enzyme and generate fluorescent signal. Under the action of UDG, one branched hairpin was impelled folding into a close conformation after the excision of the single uracil. This reconfigured hairpin could immediately initiate the polymerization/nicking amplification reaction of another branched hairpin accompanying with the release of numerous G-quadruplexes (G4s). In the absence of UDG, the DNA structure switch kept its original configuration, and thus the subsequent polymerization/nicking reaction was inhibited, resulting in the release of few G4 strands. In this work, Thioflavin T was used as signal reporter to target G4s. By integrating the DNA structure switch, the quick response and high sensitivity for UDG determination was achieved and a low detection limit of 0.0001U/mL was obtained, which was superior to the most fluorescent methods for UDG assay. The repeatability of the as-proposed strategy was demonstrated under the concentration of 0.02U/mL and 0.002U/mL, the relative standard deviation obtained from 5 successive samples were 1.7% and 2.8%, respectively. The integrated DNA structure switch strategy proposed here has the potential application for the study of mechanism and function of UDG enzyme and the screening the inhibitors as potential drugs and biochemical tools. Copyright © 2017 Elsevier B.V. All rights reserved.

Photochemistry of Pyrimidine in Astrophysical Ices: Formation of Nucleobases and Other Prebiotic Species

NASA Technical Reports Server (NTRS)

Nuevo, Michel; Sandford, Scott A.; Materese, Christopher K.; Milam, Stefanie N.

2012-01-01

Nucleobases are N-heterocycles that are the informational subunits of DNA and RNA. They are divided into two molecular groups: pyrimidine bases (uracil, cytosine, and thymine) and purine bases (adenine and guanine). Nucleobases have been detected in meteorites, and their extraterrestrial origin confirmed by isotopic measurements. Although no N-heterocycles have ever been observed in the ISM, the positions of the 6.2- m interstellar emission features suggest a population of such molecules is likely to be present. However, laboratory experiments have shown that the ultraviolet (UV) irradiation of pyrimidine in ices of astrophysical relevance such as H2O, NH3, CH3OH, CH4, CO, or combinations of these at low temperature (less than or equal to 20 K) leads to the formation of several pyrimidine derivatives including the nucleobases uracil and cytosine, as well as precursors such as 4(3H)-pyrimidone and 4-aminopyrimidine. Quantum calculations on the formation of 4(3H)-pyrimidone and uracil from the irradiation of pyrimidine in pure H2O ices are in agreement with their experimental formation pathways.10 In those residues, other species of prebiotic interest such as urea as well as the amino acids glycine and alanine could also be identified. However, only very small amounts of pyrimidine derivatives containing CH3 groups could be detected, suggesting that the addition of methyl groups to pyrimidine is not an efficient process. For this reason, the nucleobase thymine was not observed in any of the samples. In this work, we study the formation of nucleobases and other photo-products of prebiotic interest from the UV irradiation of pyrimidine in ices containing H2O, NH3, CH3OH, and CO, mixed in astrophysical proportions.

Attempted nonenzymatic template-directed oligomerizations on a polyadenylic acid template: implications for the nature of the first genetic material

NASA Technical Reports Server (NTRS)

Stribling, R.; Miller, S. L.

1991-01-01

Previous attempts to produce nonenzymatic template-directed oligomerizations of activated pyrimidines on polypurine templates have been unsuccessful. The only efficient reactions are those where the template is composed primarily of pyrimidines, especially cytosine. Because molecular evolution requires that a synthesized daughter polynucleotide be capable of acting as a template for the synthesis of the original polynucleotide, the one-way replication achieved thus far is inadequate to initiate an evolving system. Several uracil analogs were used in this investigation in order to search for possible replacements for uracil. The monomers used in this investigation were the imidazolides of UMP, xanthosine 5'-monophosphate, the bis-monophosphates of the acyclic nucleosides of uracil, and 2,4-quinazolinedione. The concentrations of various salts, buffers, pH, and temperature were among the different variables investigated in attempts to find conditions that would permit template-directed oligomerizations. Although the different monomers in this study demonstrated varying abilities to form very short oligomers, we were unable to detect any enhancement of this oligomerization that could be attributed to the poly(A) template. Although special conditions might be found that would allow purine-rich templates to work, these reactions cannot be considered robust. The results of our experiments suggest that pyrimidines were not part of the original replicating system on the primitive Earth. It has already been shown that ribose is an unlikely component of the first replicating systems, and we now suggest that phosphate was absent as well. This is due to the low solubility of phosphate in the present ocean (3 x 10(-6) M), as well as the difficulty of prebiotic activation of phosphates.

The methylenetetrahydrofolate reductase C677T mutation induces cell-specific changes in genomic DNA methylation and uracil misincorporation: A possible molecular basis for the site-specific cancer risk modification

PubMed Central

Sohn, Kyoung-Jin; Jang, Hyeran; Campan, Mihaela; Weisenberger, Daniel J.; Dickhout, Jeffrey; Wang, Yi-Cheng; Cho, Robert C.; Yates, Zoe; Lucock, Mark; Chiang, En-Pei; Austin, Richard C.; Choi, Sang-Woon; Laird, Peter W.; Kim, Young-In

2009-01-01

The C677T polymorphism in the methylenetetrahydrofolate reductase (MTHFR) gene is associated with a decreased risk of colon cancer while it may increase the risk of breast cancer. This polymorphism is associated with changes in intracellular folate cofactors, which may affect DNA methylation and synthesis via altered one-carbon transfer reactions. We investigated the effect of this mutation on DNA methylation and uracil misincorporation and its interaction with exogenous folate in further modulating these biomarkers of one-carbon transfer reactions in an in vitro model of the MTHFR 677T mutation in HCT116 colon and MDA-MB-435 breast adenocarcinoma cells. In HCT116 cells, the MTHFR 677T mutation was associated with significantly increased genomic DNA methylation when folate supply was adequate or high; however, in the setting of folate insufficiency, this mutation was associated with significantly decreased genomic DNA methylation. In contrast, in MDA-MB-435 cells, the MTHFR 677T mutation was associated with significantly decreased genomic DNA methylation when folate supply was adequate or high and with no effect when folate supply was low. The MTHFR 677T mutation was associated with a nonsignificant trend toward decreased and increased uracil misincorporation in HCT116 and MDA-MB-435 cells, respectively. Our data demonstrate for the first time a functional consequence of changes in intracellular folate cofactors resulting from the MTHFR 677T mutation in cells derived from the target organs of interest, thus providing a plausible cellular mechanism that may partly explain the site-specific modification of colon and breast cancer risks associated with the MTHFR C677T mutation. PMID:19123462

Deletion of the uracil permease gene confers cross-resistance to 5-fluorouracil and azoles in Candida lusitaniae and highlights antagonistic interaction between fluorinated nucleotides and fluconazole.

PubMed

Gabriel, Frédéric; Sabra, Ayman; El-Kirat-Chatel, Sofiane; Pujol, Sophie; Fitton-Ouhabi, Valérie; Brèthes, Daniel; Dementhon, Karine; Accoceberry, Isabelle; Noël, Thierry

2014-08-01

We characterized two additional membrane transporters (Fur4p and Dal4p) of the nucleobase cation symporter 1 (NCS1) family involved in the uptake transport of pyrimidines and related molecules in the opportunistic pathogenic yeast Candida lusitaniae. Simple and multiple null mutants were constructed by gene deletion and genetic crosses. The function of each transporter was characterized by supplementation experiments, and the kinetic parameters of the uptake transport of uracil were measured using radiolabeled substrate. Fur4p specifically transports uracil and 5-fluorouracil. Dal4p is very close to Fur4p and transports allantoin (glyoxyldiureide). Deletion of the FUR4 gene confers resistance to 5-fluorouracil as well as cross-resistance to triazoles and imidazole antifungals when they are used simultaneously with 5-fluorouracil. However, the nucleobase transporters are not involved in azole uptake. Only fluorinated pyrimidines, not pyrimidines themselves, are able to promote cross-resistance to azoles by both the salvage and the de novo pathway of pyrimidine synthesis. A reinterpretation of the data previously obtained led us to show that subinhibitory doses of 5-fluorocytosine, 5-fluorouracil, and 5-fluorouridine also were able to trigger resistance to fluconazole in susceptible wild-type strains of C. lusitaniae and of different Candida species. Our results suggest that intracellular fluorinated nucleotides play a key role in azole resistance, either by preventing azoles from targeting the lanosterol 14-alpha-demethylase or its catalytic site or by acting as a molecular switch for the triggering of efflux transport. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

The radiation stability of the RNA base uracil in H2O-ice and CO2-ice: in-situ laboratory measurements with applications to comets, Europa, and Mars

NASA Astrophysics Data System (ADS)

Gerakines, Perry A.; Frail, Sarah; Hudson, Reggie L.

2017-10-01

Planetary bodies of astrobiological interest, such as Mars, are often exposed to harsh incident radiation, which will influence the times that molecules can survive on them. Some or all of these bodies may well contain biologically-important organic molecules, some may even have supported life at some point in their history, and some may support life today. Future searches for organic molecules likely will include sampling the martian subsurface or a cometary surface sample return mission, where organics may be frozen in ices dominated by either H2O or CO2, which provide some protection from ionizing radiation.Recently, our research group has published studies of the radiation stability of amino acids, with a focus on glycine - in both undiluted form and in mixtures with H2O and CO2. Here, we present a similar study that focuses on the radiation-chemical kinetics of the RNA base uracil. We compare results for uracil decay for dilution in both H2O and CO2 ices. Moreover, we compare these new results with those for glycine. For each sample, we measured uracil’s destruction rate constant and half-life dose due to irradiation by 0.9-MeV protons. All measurements were made in situ at the temperature of irradiation using IR spectroscopy. Trends with dilution (up to ~300:1) and temperature (up to ~150 K) are considered, and results are discussed in the context of icy planetary surfaces.Acknowledgment: Our work is supported in part by the NASA Emerging Worlds Program and by the NASA Astrobiology Institute through the Goddard Center for Astrobiology.

Multiple Decay Mechanisms and 2D-UV Spectroscopic Fingerprints of Singlet Excited Solvated Adenine-Uracil Monophosphate.

PubMed

Li, Quansong; Giussani, Angelo; Segarra-Martí, Javier; Nenov, Artur; Rivalta, Ivan; Voityuk, Alexander A; Mukamel, Shaul; Roca-Sanjuán, Daniel; Garavelli, Marco; Blancafort, Lluís

2016-05-23

The decay channels of singlet excited adenine uracil monophosphate (ApU) in water are studied with CASPT2//CASSCF:MM potential energy calculations and simulation of the 2D-UV spectroscopic fingerprints with the aim of elucidating the role of the different electronic states of the stacked conformer in the excited state dynamics. The adenine (1) La state can decay without a barrier to a conical intersection with the ground state. In contrast, the adenine (1) Lb and uracil S(U) states have minima that are separated from the intersections by sizeable barriers. Depending on the backbone conformation, the CT state can undergo inter-base hydrogen transfer and decay to the ground state through a conical intersection, or it can yield a long-lived minimum stabilized by a hydrogen bond between the two ribose rings. This suggests that the (1) Lb , S(U) and CT states of the stacked conformer may all contribute to the experimental lifetimes of 18 and 240 ps. We have also simulated the time evolution of the 2D-UV spectra and provide the specific fingerprint of each species in a recommended probe window between 25 000 and 38 000 cm(-1) in which decongested, clearly distinguishable spectra can be obtained. This is expected to allow the mechanistic scenarios to be discerned in the near future with the help of the corresponding experiments. Our results reveal the complexity of the photophysics of the relatively small ApU system, and the potential of 2D-UV spectroscopy to disentangle the photophysics of multichromophoric systems. © 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

Pathophysiology of B-cell intrinsic immunoglobulin class switch recombination deficiencies.

PubMed

Durandy, Anne; Taubenheim, Nadine; Peron, Sophie; Fischer, Alain

2007-01-01

B-cell intrinsic immunoglobulin class switch recombination (Ig-CSR) deficiencies, previously termed hyper-IgM syndromes, are genetically determined conditions characterized by normal or elevated serum IgM levels and an absence or very low levels of IgG, IgA, and IgE. As a function of the molecular mechanism, the defective CSR is variably associated to a defect in the generation of somatic hypermutations (SHMs) in the Ig variable region. The study of Ig-CSR deficiencies contributed to a better delineation of the mechanisms underlying CSR and SHM, the major events of antigen-triggered antibody maturation. Four Ig-CSR deficiency phenotypes have been so far reported: the description of the activation-induced cytidine deaminase (AID) deficiency (Ig-CSR deficiency 1), caused by recessive mutations of AICDA gene, characterized by a defect in CSR and SHM, clearly established the role of AID in the induction of the Ig gene rearrangements underlying CSR and SHM. A CSR-specific function of AID has, however, been detected by the observation of a selective CSR defect caused by mutations affecting the C-terminus of AID. Ig-CSR deficiency 2 is the consequence of uracil-N-glycosylase (UNG) deficiency. Because UNG, a molecule of the base excision repair machinery, removes uracils from DNA and AID deaminates cytosines into uracils, that observation indicates that the AID-UNG pathway directly targets DNA of switch regions from the Ig heavy-chain locus to induce the CSR process. Ig-CSR deficiencies 3 and 4 are characterized by a selective CSR defect resulting from blocks at distinct steps of CSR. A further understanding of the CSR machinery is expected from their molecular definition.

Cetus

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

(the Sea Monster or Whale; abbrev. Cet, gen. Ceti; area 1231 sq. deg.) An equatorial constellation which lies between Aquarius and Taurus, and culminates at midnight in October. It is named after the sea monster from which Perseus rescued Andromeda in Greek mythology, though it is sometimes identified as a whale. Its brightest stars were cataloged by Ptolemy (c. AD 100-175) in the Almagest....

Pegasus

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

(the Winged Horse; abbrev. Peg, gen. Pegasi; area 1121 sq. deg.) A northern constellation that extends from Cygnus, Lacerta and Andromeda almost to the celestial equator, and culminates at midnight in early September. It is named after the winged horse in Greek mythology that sprang from the body of Medusa, the Gorgon, when she was beheaded by Perseus, and later was tamed by the hero Bellerophon. ...

Ig heavy chain class switch recombination: mechanism and regulation

PubMed Central

Stavnezer, Janet; Schrader, Carol E.

2014-01-01

Ig heavy chain class switching occurs rapidly after activation of mature naïve B cells, resulting in a switch from expressing IgM and IgD to expression of IgG, IgE, or IgA; this switch improves the ability of antibodies to remove the pathogen that induces the humoral immune response. Class switching occurs by a deletional recombination between two different switch (S) regions, each of which is associated with a heavy chain constant (CH) region gene. Class switch recombination (CSR) is instigated by activation-induced cytidine deaminase (AID), which converts cytosines in S regions to uracils. The uracils are subsequently removed by two DNA repair pathways, resulting in mutations, single-strand DNA breaks, and the double-strand breaks required for CSR. We discuss several aspects of CSR, including how CSR is induced, CSR in B-cell progenitors, the roles for transcription and chromosomal looping in CSR, and the roles of certain DNA repair enzymes in CSR. PMID:25411432

Excitation of lowest electronic states of the uracil molecule by slow electrons

NASA Astrophysics Data System (ADS)

Chernyshova, I. V.; Kontros, J. E.; Markush, P. P.; Shpenik, O. B.

2012-07-01

The excitation of lowest electronic states of the uracil molecule in the gas phase has been studied by electron energy loss spectroscopy. Along with excitation of lowest singlet states, excitation of two lowest triplet states at 3.75 and 4.76 eV (±0.05 eV) and vibrational excitation of the molecule in two resonant ranges (1-2 and 3-4 eV) have been observed for the first time. The peak of the excitation band related to the lowest singlet state (5.50 eV) is found to be blueshifted by 0.4 eV in comparison with the optical absorption spectroscopy data. The threshold excitation spectra have been measured for the first time, with detection of electrons inelastically scattered by an angle of 180°. These spectra exhibit clear separation of the 5.50-eV-wide band into two bands, which are due to the excitation of the triplet 13 A″ and singlet 11 A' states.

Characterization of GM-CSF-inhibitory factor and Uracil DNA glycosylase encoding genes from camel pseudocowpoxvirus.

PubMed

Nagarajan, G; Swami, Shelesh Kumar; Dahiya, Shyam Singh; Narnaware, S D; Mehta, S C; Singh, P K; Singh, Raghvendar; Tuteja, F C; Patil, N V

2015-06-01

The present study describes the PCR amplification of GM-CSF-inhibitory factor (GIF) and Uracil DNA glycosylase (UDG) encoding genes of pseudocowpoxvirus (PCPV) from the Indian Dromedaries (Camelus dromedarius) infected with contagious ecthyma using the primers based on the corresponding gene sequences of human PCPV and reindeer PCPV, respectively. The length of GIF gene of PCPV obtained from camel is 795 bp and due to the addition of one cytosine residue at position 374 and one adenine residue at position 516, the open reading frame (ORF) got altered, resulting in the production of truncated polypeptide. The ORF of UDG encoding gene of camel PCPV is 696 bp encoding a polypeptide of 26.0 kDa. Comparison of amino acid sequence homologies of GIF and UDG of camel PCPV revealed that the camel PCPV is closer to ORFV and PCPV (reference stains of both human and reindeer), respectively. Copyright © 2015 Elsevier Ltd. All rights reserved.

Extracellular palladium-catalysed dealkylation of 5-fluoro-1-propargyl-uracil as a bioorthogonally activated prodrug approach

PubMed Central

Weiss, Jason T.; Dawson, John C.; Macleod, Kenneth G.; Rybski, Witold; Fraser, Craig; Torres-Sánchez, Carmen; Patton, E. Elizabeth; Bradley, Mark; Carragher, Neil O.; Unciti-Broceta, Asier

2014-01-01

A bioorthogonal organometallic reaction is a biocompatible transformation undergone by a synthetic material exclusively through the mediation of a non-biotic metal source; a selective process used to label biomolecules and activate probes in biological environs. Here we report the in vitro bioorthogonal generation of 5-fluorouracil from a biologically inert precursor by heterogeneous Pd0 catalysis. Although independently harmless, combined treatment of 5-fluoro-1-propargyl-uracil and Pd0-functionalized resins exhibits comparable antiproliferative properties to the unmodified drug in colorectal and pancreatic cancer cells. Live-cell imaging and immunoassay studies demonstrate that the cytotoxic activity of the prodrug/Pd0-resin combination is due to the in situ generation of 5-fluorouracil. Pd0-resins can be carefully implanted in the yolk sac of zebrafish embryos and display excellent biocompatibility and local catalytic activity. The in vitro efficacy shown by this masking/activation strategy underlines its potential to develop a bioorthogonally activated prodrug approach and supports further in vivo investigations. PMID:24522696

Constitutional self-organization of adenine-uracil-derived hybrid materials.

PubMed

Arnal-Hérault, Carole; Barboiu, Mihai; Pasc, Andreea; Michau, Mathieu; Perriat, Pascal; van der Lee, Arie

2007-01-01

The alkoxysilane nucleobase adenine (A) and uracil (U) precursors described in this paper generate in solution a complex library of hydrogen-bonded aggregates, which can be expressed in the solid state as discrete higher oligomers. The different interconverting outputs that nucleobases may form by oligomerization define a dynamic polyfunctional diversity that may be "extracted selectively" in solid state by sol-gel transcription, under the intrinsic stability of the system. After the sol-gel process, unique constitutional preference for specific geometries in hybrid materials is consistent with a preferential arrangement of nucleobase systems, favoring the self-assembly by the Hoogsteen geometry. FTIR and NMR spectroscopy and X-ray powder diffraction experiments demonstrate the formation of self-organized hybrid supramolecular materials. Electron microscopy reveals the micrometric platelike morphology of the hybrid materials. The M(A-U) hybrid material is nanostructured in ordered circular domains of 5 nm in diameter of alternative light and dark rows with an one-dimensional periodicity of 3.5 A.

Discovery of sodium R-(+)-4-{2-[5-(2-fluoro-3-methoxyphenyl)-3-(2-fluoro-6-[trifluoromethyl]benzyl)-4-methyl-2,6-dioxo-3,6-dihydro-2H-pyrimidin-1-yl]-1-phenylethylamino}butyrate (elagolix), a potent and orally available nonpeptide antagonist of the human gonadotropin-releasing hormone receptor.

PubMed

Chen, Chen; Wu, Dongpei; Guo, Zhiqiang; Xie, Qiu; Reinhart, Greg J; Madan, Ajay; Wen, Jenny; Chen, Takung; Huang, Charles Q; Chen, Mi; Chen, Yongsheng; Tucci, Fabio C; Rowbottom, Martin; Pontillo, Joseph; Zhu, Yun-Fei; Wade, Warren; Saunders, John; Bozigian, Haig; Struthers, R Scott

2008-12-11

The discovery of novel uracil phenylethylamines bearing a butyric acid as potent human gonadotropin-releasing hormone receptor (hGnRH-R) antagonists is described. A major focus of this optimization was to improve the CYP3A4 inhibition liability of these uracils while maintaining their GnRH-R potency. R-4-{2-[5-(2-fluoro-3-methoxyphenyl)-3-(2-fluoro-6-[trifluoromethyl]benzyl)-4-methyl-2,6-dioxo-3,6-dihydro-2H-pyrimidin-1-yl]-1-phenylethylamino}butyric acid sodium salt, 10b (elagolix), was identified as a potent and selective hGnRH-R antagonist. Oral administration of 10b suppressed luteinizing hormone in castrated macaques. These efforts led to the identification of 10b as a clinical compound for the treatment of endometriosis.

Effect of coffee drinking on cell proliferation in rat urinary bladder epithelium.

PubMed

Lina, B A; Rutten, A A; Woutersen, R A

1993-12-01

A possible effect of freshly brewed drip coffee on urinary bladder carcinogenesis was investigated in male Wistar rats using cell proliferation in urinary bladder epithelium as the indicator of tumour promotion. Male rats were given either undiluted coffee brew (100% coffee), coffee diluted 10 times (10% coffee) or tap water (controls), as their only source of drinking fluid for 2 or 6 wk. Uracil, known to induce cell proliferation in urinary bladder epithelium, was included in the study as a positive control. In rats receiving 100% coffee, body weights, liquid intake and urinary volume were decreased. Neither histopathological examination of urinary bladder tissue nor the bromodeoxyuridine labelling index revealed biologically significant differences between rats receiving coffee and the tap water controls. Uracil increased the labelling index and induced hyperplasia of the urinary bladder epithelium, as expected. It was concluded that these results produced no evidence that drinking coffee predisposes to tumour development in the urinary bladder.

Functionalization of ( n, 0) CNTs ( n = 3-16) by uracil: DFT studies

NASA Astrophysics Data System (ADS)

Mirzaei, Mahmoud; Harismah, Kun; Jafari, Elham; Gülseren, Oğuz; Rad, Ali Shokuhi

2018-01-01

Density functional theory (DFT) calculations were performed to investigate stabilities and properties for uracil (U)-functionalized carbon nanotubes (CNTs). To this aim, the optimized molecular properties were evaluated for ( n, 0) models of CNTs ( n = 3-16) in the original and U-functionalized forms. The results indicated that the dipole moments and energy gaps were independent of tubular diameters whereas the binding energies showed that the U-functionalization could be better achieved for n = 8-11 curvatures of ( n, 0) CNTs. Further studies based on the evaluated atomic-scale properties, including quadrupole coupling constants ( C Q ), indicated that the electronic properties of atoms could detect the effects of diameters variations of ( n, 0) CNTs, in which the effects were very much significant for the atoms around the U-functionalization regions. Finally, the achieved results of singular U, original CNTs, and CNT-U hybrids were compared to each other to demonstrate the stabilities and properties for the U-functionalized ( n, 0) CNTs.

A Prebiotic Chemistry Experiment on the Adsorption of Nucleic Acids Bases onto a Natural Zeolite.

PubMed

Anizelli, Pedro R; Baú, João Paulo T; Gomes, Frederico P; da Costa, Antonio Carlos S; Carneiro, Cristine E A; Zaia, Cássia Thaïs B V; Zaia, Dimas A M

2015-09-01

There are currently few mechanisms that can explain how nucleic acid bases were synthesized, concentrated from dilute solutions, and/or protected against degradation by UV radiation or hydrolysis on the prebiotic Earth. A natural zeolite exhibited the potential to adsorb adenine, cytosine, thymine, and uracil over a range of pH, with greater adsorption of adenine and cytosine at acidic pH. Adsorption of all nucleic acid bases was decreased in artificial seawater compared to water, likely due to cation complexation. Furthermore, adsorption of adenine appeared to protect natural zeolite from thermal degradation. The C=O groups from thymine, cytosine and uracil appeared to assist the dissolution of the mineral while the NH2 group from adenine had no effect. As shown by FT-IR spectroscopy, adenine interacted with a natural zeolite through the NH2 group, and cytosine through the C=O group. A pseudo-second-order model best described the kinetics of adenine adsorption, which occurred faster in artificial seawaters.

Interferon induction by and toxicity of polyriboinosinic acid [poly(rI)].polyribocytidylic acid [poly (rC)], mismatched analog poly (rI).poly[r(C12Uracil)n], and poly(rI).poly(rC) L-lysine complexed with carboxymethylcellulose.

PubMed Central

Stringfellow, D A; Weed, S D

1980-01-01

The ability of polyriboinosionic acid [poly(rI)].polyribocytidylic acid [poly(rC)], mismatched analog poly (rI).poly[r(C12Uracil)n], and poly(rI).poly(rC) complexed with poly L-lysine and carboxymethylcellulose [poly(ICLc)] to induce interferon and the comparative toxicity of each in cats were evaluated. Each induced high levels of circulating interferon, although poly(ICLC) injected intravenously at 1 to 4 mg/kg induced up to 10 times more interferon than the other compounds. Each compound was pyrogenic and caused a transient decrease in leukocyte numbers. Poly(rI).poly(rC) and the mismatched analog caused severe diarrhea and nausea at the highest drug concentrations (1 to 4 mg/kg), but poly (ICLC) did not. Each compound also caused depression and lethargy and impaired coordination. PMID:6157363

[Study of the stability of pyrimido-[5,4-e]-1,2,4-triazine antibiotics in acid-base media by NMR spectroscopy].

PubMed

Esipov, S E; Chernyshev, A I; Shorshnev, S V; Iakushkina, N I; Antonovskiĭ, V L

1985-02-01

A comparative study of the NMR 1H and 13C spectra of reumycin, fervenulin and xanthothricin in aqueous acid-base media showed that at pH or pD ranging from 8.0 to 1.0 the antibiotics were chemically stable. By the ratio of the 1H and 13C chemical shifts of reumycin at pH 4.0-10.0 the pKa values of this antibiotic were determined: 6.7 in aqueous (D2O) solution and 8.76 in dimethylsulfoxide media. Alkalization of the solutions of reumycin (pH 12.0), fervenulin (pH 9.0) and xanthothricin (pH 8.0) resulted in irreversible chemical transformation of the antibiotics. The analysis of the chemical shifts in the PMR spectra of the transformation products revealed transformation of the uracil ring in reumycin and uracil and triazine rings in fervenulin and xanthothricin. Alkalization of the xanthothricin solutions resulted also in demethylation with formation of reumycin.

UNG protects B cells from AID-induced telomere loss

PubMed Central

Cortizas, Elena M.; Zahn, Astrid; Safavi, Shiva

2016-01-01

Activation-induced deaminase (AID) initiates antibody gene diversification by creating G:U mismatches in the immunoglobulin loci. However, AID also deaminates nonimmunoglobulin genes, and failure to faithfully repair these off-target lesions can cause B cell lymphoma. In this study, we identify a mechanism by which processing of G:U produced by AID at the telomeres can eliminate B cells at risk of genomic instability. We show that telomeres are off-target substrates of AID and that B cell proliferation depends on protective repair by uracil-DNA glycosylase (UNG). In contrast, in the absence of UNG activity, deleterious processing by mismatch repair leads to telomere loss and defective cell proliferation. Indeed, we show that UNG deficiency reduces B cell clonal expansion in the germinal center in mice and blocks the proliferation of tumor B cells expressing AID. We propose that AID-induced damage at telomeres acts as a fail-safe mechanism to limit the tumor promoting activity of AID when it overwhelms uracil excision repair. PMID:27697833

Gene Amplification and Point Mutations in Pyrimidine Metabolic Genes in 5-Fluorouracil Resistant Leishmania infantum

PubMed Central

Ritt, Jean-François; Raymond, Frédéric; Leprohon, Philippe; Légaré, Danielle; Corbeil, Jacques; Ouellette, Marc

2013-01-01

Background The human protozoan parasites Leishmania are prototrophic for pyrimidines with the ability of both de novo biosynthesis and uptake of pyrimidines. Methodology/Principal Findings Five independent L. infantum mutants were selected for resistance to the pyrimidine analogue 5-fluorouracil (5-FU) in the hope to better understand the metabolism of pyrimidine in Leishmania. Analysis of the 5-FU mutants by comparative genomic hybridization and whole genome sequencing revealed in selected mutants the amplification of DHFR-TS and a deletion of part of chromosome 10. Point mutations in uracil phosphorybosyl transferase (UPRT), thymidine kinase (TK) and uridine phosphorylase (UP) were also observed in three individual resistant mutants. Transfection experiments confirmed that these point mutations were responsible for 5-FU resistance. Transport studies revealed that one resistant mutant was defective for uracil and 5-FU import. Conclusion/Significance This study provided further insights in pyrimidine metabolism in Leishmania and confirmed that multiple mutations can co-exist and lead to resistance in Leishmania. PMID:24278495

Tidal interaction of small satellite galaxies with spiral primaries

NASA Technical Reports Server (NTRS)

Byrd, Gene G.

1988-01-01

The interaction of the disks of spiral galaxies and small companions is discussed. The gravitational drag effects of the disk on small satellites are of particular interest. Studies of the Andromeda Galaxy and its satellites, M32 and NGC 205, reveal the usefulness of few-body test-particle simulations in explaining many features of spiral galaxies and their satellites.

al-Sufi, Abu al-Rahman (903-86)

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

Persian astronomer, published works on astronomical instruments. Revised PTOLEMY's star catalog as the Book of the Constellations of the Fixed Stars, with improved magnitudes, stars named by reference to constellation figures (much copied, for example by ALFONSO X as Libros del Saber de Astronomìa), and nebulae, including the Andromeda Galaxy (M31). However, the work was not entirely original sin...

Kinematics of the Diffuse Ionized Gas Disk of Andromeda

NASA Astrophysics Data System (ADS)

Thelen, Alexander; Howley, K.; Guhathakurta, P.; Dorman, C.; SPLASH Collaboration

2012-01-01

This research focuses on the flattened rotating diffuse ionized gas (DIG) disk of the Andromeda Galaxy (M31). For this we use spectra from 25 multislit masks obtained by the SPLASH collaboration using the DEIMOS spectrograph on the Keck-II 10-meter telescope. Each mask contains 200 slits covering the region around M32 (S of the center of M31), the major axis of M31, and the SE minor axis. DIG emission was serendipitously detected in the background sky of these slits. By creating a normalized "sky spectrum” to remove various other sources of emission (such as night sky lines) in the background of these slits, we have examined the rotation of the DIG disk using individual line-of-sight velocity measurements of Hα, [NII] and [SII] emission. his emission is probably the result of newly formed stars ionizing the gas in the disk. The measured IG rotation will be compared to the rotation of M31's stellar disk and HI gas disk, as well as models of an infinitely thin rotating disk, to better understand the relationship between the components of the galactic disk and its differential rotation. We wish to acknowledge the NSF for funding on this project.

WATER MASERS IN THE ANDROMEDA GALAXY. I. A SURVEY FOR WATER MASERS, AMMONIA, AND HYDROGEN RECOMBINATION LINES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Darling, Jeremy; Gerard, Benjamin; Amiri, Nikta

We report the results of a Green Bank Telescope survey for water masers, ammonia (1, 1) and (2, 2), and the H66 α recombination line toward 506 luminous compact 24 μ m emitting regions in the Andromeda Galaxy (M31). We include the 206 sources observed in the Darling water maser survey for completeness. The survey was sensitive enough to detect any maser useful for ∼10 μ as yr{sup 1} astrometry. No new water masers, ammonia lines, or H66 α recombination lines were detected individually or in spectral stacks reaching rms noise levels of ∼3 mJy and ∼0.2 mJy, respectively, inmore » 3.1–3.3 km s{sup 1} channels. The lack of detections in individual spectra and in the spectral stacks is consistent with Galactic extrapolations. Contrary to previous assertions, there do not seem to be any additional bright water masers to be found in M31. The strong variability of water masers may enable new maser detections in the future, but variability may also limit the astrometric utility of known (or future) masers because flaring masers must also fade.« less

An almost head-on collision as the origin of two off-centre rings in the Andromeda galaxy.

PubMed

Block, D L; Bournaud, F; Combes, F; Groess, R; Barmby, P; Ashby, M L N; Fazio, G G; Pahre, M A; Willner, S P

2006-10-19

The unusual morphology of the Andromeda galaxy (Messier 31, the closest spiral galaxy to the Milky Way) has long been an enigma. Although regarded for decades as showing little evidence of a violent history, M31 has a well-known outer ring of star formation at a radius of ten kiloparsecs whose centre is offset from the galaxy nucleus. In addition, the outer galaxy disk is warped, as seen at both optical and radio wavelengths. The halo contains numerous loops and ripples. Here we report the presence of a second, inner dust ring with projected dimensions of 1.5 x 1 kiloparsecs and offset by about half a kiloparsec from the centre of the galaxy (based upon an analysis of previously-obtained data). The two rings appear to be density waves propagating in the disk. Numerical simulations indicate that both rings result from a companion galaxy plunging through the centre of the disk of M31. The most likely interloper is M32. Head-on collisions between galaxies are rare, but it appears nonetheless that one took place 210 million years ago in our Local Group of galaxies.

Monitoring peripheral perfusion and microcirculation.

PubMed

Dubin, Arnaldo; Henriquez, Elizabeth; Hernández, Glenn

2018-06-01

Microcirculatory alterations play a major role in the pathogenesis of shock. Monitoring tissue perfusion might be a relevant goal for shock resuscitation. The goal of this review was to revise the evidence supporting the monitoring of peripheral perfusion and microcirculation as goals of resuscitation. For this purpose, we mainly focused on skin perfusion and sublingual microcirculation. Although there are controversies about the reproducibility of capillary refill time in monitoring peripheral perfusion, it is a sound physiological variable and suitable for the ICU settings. In addition, observational studies showed its strong ability to predict outcome. Moreover, a preliminary study suggested that it might be a valuable goal for resuscitation. These results should be confirmed by the ongoing ANDROMEDA-SHOCK randomized controlled trial. On the other hand, the monitoring of sublingual microcirculation might also provide relevant physiological and prognostic information. On the contrary, methodological drawbacks mainly related to video assessment hamper its clinical implementation at the present time. Measurements of peripheral perfusion might be useful as goal of resuscitation. The results of the ANDROMEDA-SHOCK will clarify the role of skin perfusion as a guide for the treatment of shock. In contrast, the assessment of sublingual microcirculation mainly remains as a research tool.

The remnant of a merger between two dwarf galaxies in Andromeda II.

PubMed

Amorisco, N C; Evans, N W; van de Ven, G

2014-03-20

Driven by gravity, massive structures like galaxies and clusters of galaxies are believed to grow continuously through hierarchical merging and accretion of smaller systems. Observational evidence of accretion events is provided by the coherent stellar streams crossing the outer haloes of massive galaxies, such as the Milky Way or Andromeda. At similar mass scales, around 10(11) solar masses in stars, further evidence of merging activity is also ample. Mergers of lower-mass galaxies are expected within the hierarchical process of galaxy formation, but have hitherto not been seen for galaxies with less than about 10(9) solar masses in stars. Here we report the kinematic detection of a stellar stream in one of the satellite galaxies of Andromeda, the dwarf spheroidal Andromeda II, which has a mass of only 10(7) solar masses in stars. The properties of the stream show that we are observing the remnant of a merger between two dwarf galaxies. This had a drastic influence on the dynamics of the remnant, which is now rotating around its projected major axis. The stellar stream in Andromeda II illustrates the scale-free character of the formation of galaxies, down to the lowest galactic mass scales.

Phylogenetic analyses of Andromedeae (Ericaceae subfam. Vaccinioideae).

PubMed

Kron, K A; Judd, W S; Crayn, D M

1999-09-01

Phylogenetic relationships within the Andromedeae and closely related taxa were investigated by means of cladistic analyses based on phenotypic (morphology, anatomy, chromosome number, and secondary chemistry) and molecular (rbcL and matK nucleotide sequences) characters. An analysis based on combined molecular and phenotypic characters indicates that the tribe is composed of two major clades-the Gaultheria group (incl. Andromeda, Chamaedaphne, Diplycosia, Gaultheria, Leucothoë, Pernettya, Tepuia, and Zenobia) and the Lyonia group (incl. Agarista, Craibiodendron, Lyonia, and Pieris). Andromedeae are shown to be paraphyletic in all analyses because the Vaccinieae link with some or all of the genera of the Gaultheria group. Oxydendrum is sister to the clade containing the Vaccinieae, Gaultheria group, and Lyonia group. The monophyly of Agarista, Lyonia, Pieris, and Gaultheria (incl. Pernettya) is supported, while that of Leucothoë is problematic. The close relationship of Andromeda and Zenobia is novel and was strongly supported in the molecular (but not morphological) analyses. Diplycosia, Tepuia, Gaultheria, and Pernettya form a well-supported clade, which can be diagnosed by the presence of fleshy calyx lobes and methyl salicylate. Recognition of Andromedeae is not reflective of our understanding of geneological relationships and should be abandoned; the Lyonia group is formally recognized at the tribal level.

The Properties of the local Interstellar Medium and the Interaction of the Stellar Winds of epsilon Indi and lambda Andromedae with the Interstellar Environment

NASA Technical Reports Server (NTRS)

Wood, Brian E.; Alexander, William R.; Linsky, Jeffrey L.

1996-01-01

We present new observations of the Ly alpha lines of Epsilon Indi (K5 5) and A Andromedae (G8 4-3 + ?) These data were obtained by the Goddard High Resolution Spectrograph (GHRS) on the Hubble Space Telescope. Analysis of the interstellar H 1 and D 1 absorption lines reveals that the velocities and temperatures inferred from the H 1 lines are inconsistent with the parameters inferred from the D 1 lines, unless the H 1 absorption is assumed to be produced by two absorption components. One absorption component is produced by interstellar material. For both lines of sight observed, the velocity of this component is consistent with the velocity predicted by the local flow vector. For the Epsilon Indi data, the large velocity separation between the stellar emission and the interstellar absorption allows us to measure the H 1 column density independent of the shape of the intrinsic stellar Ly alpha profile. This approach permits us to quote an accurate column density and to assess its uncertainty with far more confidence than in previous analyses, for which the errors were dominated by uncertainties in the assumed stellar profiles.

Early gas stripping as the origin of the darkest galaxies in the Universe.

PubMed

Mayer, L; Kazantzidis, S; Mastropietro, C; Wadsley, J

2007-02-15

The known galaxies most dominated by dark matter (Draco, Ursa Minor and Andromeda IX) are satellites of the Milky Way and the Andromeda galaxies. They are members of a class of faint galaxies, devoid of gas, known as dwarf spheroidals, and have by far the highest ratio of dark to luminous matter. None of the models proposed to unravel their origin can simultaneously explain their exceptional dark matter content and their proximity to a much larger galaxy. Here we report simulations showing that the progenitors of these galaxies were probably gas-dominated dwarf galaxies that became satellites of a larger galaxy earlier than the other dwarf spheroidals. We find that a combination of tidal shocks and ram pressure swept away the entire gas content of such progenitors about ten billion years ago because heating by the cosmic ultraviolet background kept the gas loosely bound: a tiny stellar component embedded in a relatively massive dark halo survived until today. All luminous galaxies should be surrounded by a few extremely dark-matter-dominated dwarf spheroidal satellites, and these should have the shortest orbital periods among dwarf spheroidals because they were accreted early.

LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts.

PubMed

Maier, Holger; Döhr, Stefanie; Grote, Korbinian; O'Keeffe, Sean; Werner, Thomas; Hrabé de Angelis, Martin; Schneider, Ralf

2005-07-01

The LitMiner software is a literature data-mining tool that facilitates the identification of major gene regulation key players related to a user-defined field of interest in PubMed abstracts. The prediction of gene-regulatory relationships is based on co-occurrence analysis of key terms within the abstracts. LitMiner predicts relationships between key terms from the biomedical domain in four categories (genes, chemical compounds, diseases and tissues). Owing to the limitations (no direction, unverified automatic prediction) of the co-occurrence approach, the primary data in the LitMiner database represent postulated basic gene-gene relationships. The usefulness of the LitMiner system has been demonstrated recently in a study that reconstructed disease-related regulatory networks by promoter modelling that was initiated by a LitMiner generated primary gene list. To overcome the limitations and to verify and improve the data, we developed WikiGene, a Wiki-based curation tool that allows revision of the data by expert users over the Internet. LitMiner (http://andromeda.gsf.de/litminer) and WikiGene (http://andromeda.gsf.de/wiki) can be used unrestricted with any Internet browser.

NovaSearch Online: Research Experience in Astronomy 101

NASA Astrophysics Data System (ADS)

Pilachowski, C. A.; Rector, T.; Morris, F.; Tebbe, H.

2003-12-01

A new website at the University of Indiana Bloomington allows undergraduate, introductory astronomy students to participate in original research, discovering novae in the Andromeda Galaxy. Sequences of CCD images obtained with the WIYN 0.9-m telescope at Kitt Peak of the central region of Andromeda are displayed on the Web as Flash movies, allowing students to identify novae as new, blinking stars. Tools are provided to estimate the magnitude of the novae and to determine the Julian date of observations, so that students can plot light curves. The goal of NovaSearch is to engage students in the process of discovery, applying the content they learn from textbooks and lectures to real observations and the creation of new knowledge. NovaSearch is supplemented with live video interactions with on-site observers and remote observing at the 0.9-m telescope. For many students, NovaSearch is their first experience with science as a creative, human activity. NovaSearch is available for examination and use at www.astro.indiana.edu/novasearch/ Support from the SBC Fellows program at Indiana University, as well as from the National Science Foundation through grant ESI 0101982 to the National Optical Astronomy Observatory, is gratefully acknowledged.

Search for the rare leptonic decay B+-->mu(+)nu(mu).

PubMed

Aubert, B; Barate, R; Boutigny, D; Couderc, F; Gaillard, J-M; Hicheur, A; Karyotakis, Y; Lees, J P; Tisserand, V; Zghiche, A; Palano, A; Pompili, A; Chen, J C; Qi, N D; Rong, G; Wang, P; Zhu, Y S; Eigen, G; Ofte, I; Stugu, B; Abrams, G S; Borgland, A W; Breon, A B; Brown, D N; Button-Shafer, J; Cahn, R N; Charles, E; Day, C T; Gill, M S; Gritsan, A V; Groysman, Y; Jacobsen, R G; Kadel, R W; Kadyk, J; Kerth, L T; Kolomensky, Yu G; Kukartsev, G; LeClerc, C; Levi, M E; Lynch, G; Mir, L M; Oddone, P J; Orimoto, T J; Pripstein, M; Roe, N A; Ronan, M T; Shelkov, V G; Telnov, A V; Wenzel, W A; Ford, K; Harrison, T J; Hawkes, C M; Morgan, S E; Watson, A T; Watson, N K; Fritsch, M; Goetzen, K; Held, T; Koch, H; Lewandowski, B; Pelizaeus, M; Peters, K; Schmuecker, H; Steinke, M; Boyd, J T; Chevalier, N; Cottingham, W N; Kelly, M P; Latham, T E; Mackay, C; Wilson, F F; Abe, K; Cuhadar-Donszelmann, T; Hearty, C; Mattison, T S; McKenna, J A; Thiessen, D; Kyberd, P; McKemey, A K; Teodorescu, L; Blinov, V E; Bukin, A D; Golubev, V B; Ivanchenko, V N; Kravchenko, E A; Onuchin, A P; Serednyakov, S I; Skovpen, Yu I; Solodov, E P; Yushkov, A N; Best, D; Bruinsma, M; Chao, M; Eschrich, I; Kirkby, D; Lankford, A J; Mandelkern, M; Mommsen, R K; Roethel, W; Stoker, D P; Buchanan, C; Hartfiel, B L; Gary, J W; Layter, J; Shen, B C; Wang, K; del Re, D; Hadavand, H K; Hill, E J; MacFarlane, D B; Paar, H P; Rahatlou, Sh; Sharma, V; Berryhill, J W; Campagnari, C; Dahmes, B; Levy, S L; Long, O; Lu, A; Mazur, M A; Richman, J D; Verkerke, W; Beck, T W; Beringer, J; Eisner, A M; Heusch, C A; Lockman, W S; Schalk, T; Schmitz, R E; Schumm, B A; Seiden, A; Spradlin, P; Walkowiak, W; Williams, D C; Wilson, M G; Albert, J; Chen, E; Dubois-Felsmann, G P; Dvoretskii, A; Erwin, R J; Hitlin, D G; Narsky, I; Piatenko, T; Porter, F C; Ryd, A; Samuel, A; Yang, S; Jayatilleke, S; Mancinelli, G; Meadows, B T; Sokoloff, M D; Abe, T; Blanc, F; Bloom, P; Chen, S; Clark, P J; Ford, W T; Nauenberg, U; Olivas, A; Rankin, P; Roy, J; Smith, J G; van Hoek, W C; Zhang, L; Harton, J L; Hu, T; Soffer, A; Toki, W H; Wilson, R J; Zhang, J; Altenburg, D; Brandt, T; Brose, J; Colberg, T; Dickopp, M; Feltresi, E; Hauke, A; Lacker, H M; Maly, E; Müller-Pfefferkorn, R; Nogowski, R; Otto, S; Schubert, J; Schubert, K R; Schwierz, R; Spaan, B; Bernard, D; Bonneaud, G R; Brochard, F; Grenier, P; Thiebaux, Ch; Vasileiadis, G; Verderi, M; Bard, D J; Khan, A; Lavin, D; Muheim, F; Playfer, S; Andreotti, M; Azzolini, V; Bettoni, D; Bozzi, C; Calabrese, R; Cibinetto, G; Luppi, E; Negrini, M; Piemontese, L; Sarti, A; Treadwell, E; Baldini-Ferroli, R; Calcaterra, A; de Sangro, R; Finocchiaro, G; Patteri, P; Piccolo, M; Zallo, A; Buzzo, A; Capra, R; Contri, R; Crosetti, G; Lo Vetere, M; Macri, M; Monge, M R; Passaggio, S; Patrignani, C; Robutti, E; Santroni, A; Tosi, S; Bailey, S; Morii, M; Won, E; Dubitzky, R S; Langenegger, U; Bhimji, W; Bowerman, D A; Dauncey, P D; Egede, U; Gaillard, J R; Morton, G W; Nash, J A; Taylor, G P; Grenier, G J; Lee, S-J; Mallik, U; Cochran, J; Crawley, H B; Lamsa, J; Meyer, W T; Prell, S; Rosenberg, E I; Yi, J; Davier, M; Grosdidier, G; Höcker, A; Laplace, S; Le Diberder, F; Lepeltier, V; Lutz, A M; Petersen, T C; Plaszczynski, S; Schune, M H; Tantot, L; Wormser, G; Brigljević, V; Cheng, C H; Lange, D J; Simani, M C; Wright, D M; Bevan, A J; Coleman, J P; Fry, J R; Gabathuler, E; Gamet, R; Kay, M; Parry, R J; Payne, D J; Sloane, R J; Touramanis, C; Back, J J; Harrison, P F; Mohanty, G B; Brown, C L; Cowan, G; Flack, R L; Flaecher, H U; George, S; Green, M G; Kurup, A; Marker, C E; McMahon, T R; Ricciardi, S; Salvatore, F; Vaitsas, G; Winter, M A; Brown, D; Davis, C L; Allison, J; Barlow, N R; Barlow, R J; Hart, P A; Hodgkinson, M C; Lafferty, G D; Lyon, A J; Williams, J C; Farbin, A; Hulsbergen, W D; Jawahery, A; Kovalskyi, D; Lae, C K; Lillard, V; Roberts, D A; Blaylock, G; Dallapiccola, C; Flood, K T; Hertzbach, S S; Kofler, R; Koptchev, V B; Moore, T B; Saremi, S; Staengle, H; Willocq, S; Cowan, R; Sciolla, G; Taylor, F; Yamamoto, R K; Mangeol, D J J; Patel, P M; Robertson, S H; Lazzaro, A; Palombo, F; Bauer, J M; Cremaldi, L; Eschenburg, V; Godang, R; Kroeger, R; Reidy, J; Sanders, D A; Summers, D J; Zhao, H W; Brunet, S; Cote-Ahern, D; Taras, P; Nicholson, H; Cartaro, C; Cavallo, N; De Nardo, G; Fabozzi, F; Gatto, C; Lista, L; Paolucci, P; Piccolo, D; Sciacca, C; Baak, M A; Raven, G; Wilden, L; Jessop, C P; LoSecco, J M; Gabriel, T A; Allmendinger, T; Brau, B; Gan, K K; Honscheid, K; Hufnagel, D; Kagan, H; Kass, R; Pulliam, T; Ter-Antonyan, R; Wong, Q K; Brau, J; Frey, R; Igonkina, O; Potter, C T; Sinev, N B; Strom, D; Torrence, E; Colecchia, F; Dorigo, A; Galeazzi, F; Margoni, M; Morandin, M; Posocco, M; Rotondo, M; Simonetto, F; Stroili, R; Tiozzo, G; Voci, C; Benayoun, M; Briand, H; Chauveau, J; David, P; de la Vaissière, Ch; Del Buono, L; Hamon, O; John, M J J; Leruste, Ph; Ocariz, J; Pivk, M; Roos, L; T'Jampens, S; Therin, G; Manfredi, P F; Re, V; Behera, P K; Gladney, L; Guo, Q H; Panetta, J; Anulli, F; Biasini, M; Peruzzi, I M; Pioppi, M; Angelini, C; Batignani, G; Bettarini, S; Bondioli, M; Bucci, F; Calderini, G; Carpinelli, M; Del Gamba, V; Forti, F; Giorgi, M A; Lusiani, A; Marchiori, G; Martinez-Vidal, F; Morganti, M; Neri, N; Paoloni, E; Rama, M; Rizzo, G; Sandrelli, F; Walsh, J; Haire, M; Judd, D; Paick, K; Wagoner, D E; Danielson, N; Elmer, P; Lu, C; Miftakov, V; Olsen, J; Smith, A J S; Varnes, E W; Bellini, F; Cavoto, G; Faccini, R; Ferrarotto, F; Ferroni, F; Gaspero, M; Mazzoni, M A; Morganti, S; Pierini, M; Piredda, G; Safai Tehrani, F; Voena, C; Christ, S; Wagner, G; Waldi, R; Adye, T; De Groot, N; Franek, B; Geddes, N I; Gopal, G P; Olaiya, E O; Xella, S M; Aleksan, R; Emery, S; Gaidot, A; Ganzhur, S F; Giraud, P-F; Hamel de Monchenault, G; Kozanecki, W; Langer, M; Legendre, M; London, G W; Mayer, B; Schott, G; Vasseur, G; Yeche, Ch; Zito, M; Purohit, M V; Weidemann, A W; Yumiceva, F X; Aston, D; Bartoldus, R; Berger, N; Boyarski, A M; Buchmueller, O L; Convery, M R; Cristinziani, M; Dong, D; Dorfan, J; Dujmic, D; Dunwoodie, W; Elsen, E E; Field, R C; Glanzman, T; Gowdy, S J; Hadig, T; Halyo, V; Hryn'ova, T; Innes, W R; Kelsey, M H; Kim, P; Kocian, M L; Leith, D W G S; Libby, J; Luitz, S; Luth, V; Lynch, H L; Marsiske, H; Messner, R; Muller, D R; O'Grady, C P; Ozcan, V E; Perazzo, A; Perl, M; Petrak, S; Ratcliff, B N; Roodman, A; Salnikov, A A; Schindler, R H; Schwiening, J; Simi, G; Snyder, A; Soha, A; Stelzer, J; Su, D; Sullivan, M K; Va'vra, J; Wagner, S R; Weaver, M; Weinstein, A J R; Wisniewski, W J; Wright, D H; Young, C C; Burchat, P R; Edwards, A J; Meyer, T I; Petersen, B A; Roat, C; Ahmed, M; Ahmed, S; Alam, M S; Ernst, J A; Saeed, M A; Saleem, M; Wappler, F R; Bugg, W; Krishnamurthy, M; Spanier, S M; Eckmann, R; Kim, H; Ritchie, J L; Satpathy, A; Schwitters, R F; Izen, J M; Kitayama, I; Lou, X C; Ye, S; Bianchi, F; Bona, M; Gallo, F; Gamba, D; Borean, C; Bosisio, L; Cossutti, F; Della Ricca, G; Dittongo, S; Grancagnolo, S; Lanceri, L; Poropat, P; Vitale, L; Vuagnin, G; Panvini, R S; Banerjee, Sw; Brown, C M; Fortin, D; Jackson, P D; Kowalewski, R; Roney, J M; Band, H R; Dasu, S; Datta, M; Eichenbaum, A M; Johnson, J R; Kutter, P E; Li, H; Liu, R; Lodovico, F Di; Mihalyi, A; Mohapatra, A K; Pan, Y; Prepost, R; Sekula, S J; von Wimmersperg-Toeller, J H; Wu, J; Wu, S L; Yu, Z; Neal, H; Christinziani, B

2004-06-04

We have performed a search for the rare leptonic decay B+-->mu(+)nu(mu) with data collected at the Upsilon(4S) resonance by the BABAR experiment at the PEP-II storage ring. In a sample of 88.4 x 10(6) BB pairs, we find no significant evidence for a signal and set an upper limit on the branching fraction B(B+-->my(+)nu(my))< 6.6 x 10(-6) at the 90% confidence level.

An Investigation of Partizan Misere Games

NASA Astrophysics Data System (ADS)

Allen, Meghan Rose

2010-08-01

Combinatorial games are played under two different play conventions: normal play, where the last player to move wins, and mis play, where the last player to move loses. Combinatorial games are also classified into impartial positions and partizan positions, where a position is impartial if both players have the same available moves and partizan otherwise. Mis play games lack many of the useful calculational and theoretical properties of normal play games. Until Plambeck's indistinguishability quotient and mis monoid theory were developed in 2004, research on mis play games had stalled. This thesis investigates partizan combinatorial mis play games, by taking Plambeck's indistinguishability and mis monoid theory for impartial positions and extending it to partizan ones, as well as examining the difficulties in constructing a category of mis play games in a similar manner to Joyal's category of normal play games. This thesis succeeds in finding an infinite set of positions which each have finite mis monoid, examining conditions on positions for when * + * is equivalent to 0, finding a set of positions which have Tweedledum-Tweedledee type strategy, and the two most important results of this thesis: giving necessary and sufficient conditions on a set of positions Upsilon such that the mis monoid of Upsilon is the same as the mis monoid of * and giving a construction theorem which builds all positions ξ such that the mis monoid of ξ is the same as the mis monoid of *.

Zonal Winds Between 25 and 120 Km Retrieved from Solar Occultation Spectra. Ph.D. Thesis Final Report

NASA Technical Reports Server (NTRS)

Vancleef, Garrett Warren; Shaw, John H.

1989-01-01

Atmospheric winds at heights between 25 and 120 km have been retrieved with precisions of 5/ms from the Doppler shifts of atmospheric absorption lines measured from a satellite-borne instrument. Lines of the upsilon 3 CO2 and upsilon 2 H2O rotation-vibration bands caused by gases in the instrument allowed the instrumental frequency scale to be absolutely calibrated so that accurate relative speeds could be obtained. By comparing the positions of both sets of instrumental lines the calibration of the frequency scale was determined to be stable to a precision of less than 2 x 10(-5) cm during the course of each occultation. It was found that the instrumental resolution of 0.015 cm after apodization, the signal to noise ratio of about 100 and stable calibration allowed relative speeds to be determined to a precision of 5 ms or better by using small numbers of absorption lines between 1600 and 3200 cm. Absolute absorption line positions were simultaneously recovered to precisions of 5 x 10(-5) cm or better. The wind speed profiles determined from four sunset occultations and one sunrise occultation show remarkable similarities in the magnitudes and directions of the zonal wind velocities as functions of height. These wind profiles appear to be manifestations of atmospheric tides.

Associations between single nucleotide polymorphisms in folate uptake and metabolizing genes with blood folate, homocysteine and DNA uracil concentrations

USDA-ARS?s Scientific Manuscript database

Background: Folate is an essential nutrient which supports nucleotide synthesis and biological methylation reactions. Diminished folate status results in chromosome breakage and is associated with several diseases including colorectal cancer. Folate status is also inversely related to plasma homocys...

Comparison of multiple gene assembly methods for metabolic engineering

Treesearch

Chenfeng Lu; Karen Mansoorabadi; Thomas Jeffries

2007-01-01

A universal, rapid DNA assembly method for efficient multigene plasmid construction is important for biological research and for optimizing gene expression in industrial microbes. Three different approaches to achieve this goal were evaluated. These included creating long complementary extensions using a uracil-DNA glycosylase technique, overlap extension polymerase...

THE SPLASH SURVEY: INTERNAL KINEMATICS, CHEMICAL ABUNDANCES, AND MASSES OF THE ANDROMEDA I, II, III, VII, X, AND XIV DWARF SPHEROIDAL GALAXIES {sup ,}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kalirai, Jason S.; Beaton, Rachael L.; Majewski, Steven R.

2010-03-10

We present new Keck/DEIMOS spectroscopic observations of hundreds of individual stars along the sightline to the first three of the Andromeda (M31) dwarf spheroidal (dSph) galaxies to be discovered, And I, II, and III, and combine them with recent spectroscopic studies by our team of three additional M31 dSphs, And VII, X, and XIV, as a part of the SPLASH Survey (Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo). Member stars of each dSph are isolated from foreground Milky Way dwarf stars and M31 field contamination using a variety of photometric and spectroscopic diagnostics. Our final spectroscopic sample of membermore » stars in each dSph, for which we measure accurate radial velocities with a median uncertainty (random plus systematic errors) of 4-5 km s{sup -1}, includes 80 red giants in And I, 95 in And II, 43 in And III, 18 in And VII, 22 in And X, and 38 in And XIV. The sample of confirmed members in the six dSphs is used to derive each system's mean radial velocity, intrinsic central velocity dispersion, mean abundance, abundance spread, and dynamical mass. This combined data set presents us with a unique opportunity to perform the first systematic comparison of the global properties (e.g., metallicities, sizes, and dark matter masses) of one-third of Andromeda's total known dSph population with Milky Way counterparts of the same luminosity. Our overall comparisons indicate that the family of dSphs in these two hosts have both similarities and differences. For example, we find that the luminosity-metallicity relation is very similar between L {approx} 10{sup 5} and 10{sup 7} L{sub sun}, suggesting that the chemical evolution histories of each group of dSphs are similar. The lowest luminosity M31 dSphs appear to deviate from the relation, possibly suggesting tidal stripping. Previous observations have noted that the sizes of M31's brightest dSphs are systematically larger than Milky Way satellites of similar luminosity. At lower luminosities between L = 10{sup 4} and 10{sup 6} L{sub sun}, we find that the sizes of dSphs in the two hosts significantly overlap and that four of the faintest M31 dSphs are smaller than Milky Way counterparts. The first dynamical mass measurements of six M31 dSphs over a large range in luminosity indicate similar mass-to-light ratios compared to Milky Way dSphs among the brighter satellites, and smaller mass-to-light ratios among the fainter satellites. Combined with their similar or larger sizes at these luminosities, these results hint that the M31 dSphs are systematically less dense than Milky Way dSphs. The implications of these similarities and differences for general understanding of galaxy formation and evolution are summarized.« less

The search for the elusive companion of EG andromedae

NASA Technical Reports Server (NTRS)

Pesce, Joseph E.; Stencel, Robert E.; Oliversen, Nancy A.

1987-01-01

Observations are reported at opposite quadratures of the interacting symbiotic binary EG And (HD-4174, Period = 470 d). After correcting for absolute motion at the system, it appears, surprisingly, that many of the nebular lines arise from material that moves with the red giant star. This fact is used to interpret the observed complex line profiles of C IV and He II in the object.

Evidence for simultaneous production of $$J/\\psi$$ and $$\\Upsilon$$ mesons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abazov, Victor Mukhamedovich

We report evidence for the simultaneous production of J/ψ and Υ mesons in 8.1 fb -1 of data collected at √s =1.96 TeV by the D0 experiment at the Fermilab pp - Tevatron Collider. Events with these characteristics are expected to be produced predominantly by gluon-gluon interactions. In our analysis, we extract the effective cross section characterizing the initial parton spatial distribution, σ eff = 2.2 ± 0.7 (stat) ± 0.9 (syst) mb.

Evidence for simultaneous production of $$J/\\psi$$ and $$\\Upsilon$$ mesons

DOE PAGES

Abazov, Victor Mukhamedovich

2016-02-25

We report evidence for the simultaneous production of J/ψ and Υ mesons in 8.1 fb -1 of data collected at √s =1.96 TeV by the D0 experiment at the Fermilab pp - Tevatron Collider. Events with these characteristics are expected to be produced predominantly by gluon-gluon interactions. In our analysis, we extract the effective cross section characterizing the initial parton spatial distribution, σ eff = 2.2 ± 0.7 (stat) ± 0.9 (syst) mb.

Participation in the ARGUS experiment at the DORIS Collider at Desy, Hamburg, Germany and participation in the AMY experiment at the TRISTAN Collider in Tsukuba, Japan: 1986 progress report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Darden, C.

1987-01-01

Progress is reported on the AMY and ARGUS detectors, as well as plans for the next funding period. The AMY detector is reported as well on the way to completion, but not yet ready to take data. The ARGUS detector is reported to have completed its fourth year of operation. Some upsilon 1S decay data are discussed. 37 refs. (LEW)

Heavy Quark Effective Theory

NASA Astrophysics Data System (ADS)

Manohar, A. V.

2003-02-01

These lecture notes present some of the basic ideas of heavy quark effective theory. The topics covered include the classification of states, the derivation of the HQET Lagrangian at tree level, hadron masses, meson form factors, Luke's theorem, reparameterization invariance and inclusive decays. Radiative corrections are discussed in some detail, including an explicit computation of a matching correction for HQET. Borel summability, renormalons, and their connection with the QCD perturbation series is covered, as well as the use of the upsilon expansion to improve the convergence of the perturbation series.

Cytotoxic and HIV-1 enzyme inhibitory activities of Red Sea marine organisms.

PubMed

Ellithey, Mona S; Lall, Namrita; Hussein, Ahmed A; Meyer, Debra

2014-02-25

Cancer and HIV/AIDS are two of the greatest public health and humanitarian challenges facing the world today. Infection with HIV not only weakens the immune system leading to AIDS and increasing the risk of opportunistic infections, but also increases the risk of several types of cancer. The enormous biodiversity of marine habitats is mirrored by the molecular diversity of secondary metabolites found in marine animals, plants and microbes which is why this work was designed to assess the anti-HIV and cytotoxic activities of some marine organisms of the Red Sea. The lipophilic fractions of methanolic extracts of thirteen marine organisms collected from the Red Sea (Egypt) were screened for cytotoxicity against two human cancer cell lines; leukaemia (U937) and cervical cancer (HeLa) cells. African green monkey kidney cells (Vero) were used as normal non-malignant control cells. The extracts were also tested for their inhibitory activity against HIV-1 enzymes, reverse transcriptase (RT) and protease (PR). Cytotoxicity results showed strong activity of the Cnidarian Litophyton arboreum against U-937 (IC50; 6.5 μg/ml ±2.3) with a selectivity index (SI) of 6.45, while the Cnidarian Sarcophyton trochliophorum showed strong activity against HeLa cells (IC50; 5.2 μg/ml ±1.2) with an SI of 2.09. Other species showed moderate to weak cytotoxicity against both cell lines. Two extracts showed potent inhibitory activity against HIV-1 protease; these were the Cnidarian jelly fish Cassiopia andromeda (IC50; 0.84 μg/ml ±0.05) and the red algae Galaxura filamentosa (2.6 μg/ml ±1.29). It is interesting to note that the most active extracts against HIV-1 PR, C. andromeda and G. filamentosa showed no cytotoxicity in the three cell lines at the highest concentration tested (100 μg/ml). The strong cytotoxicity of the soft corals L. arboreum and S. trochliophorum as well as the anti-PR activity of the jelly fish C. andromeda and the red algae G. filamentosa suggests the medicinal potential of crude extracts of these marine organisms.

Cytotoxic and HIV-1 enzyme inhibitory activities of Red Sea marine organisms

PubMed Central

2014-01-01

Background Cancer and HIV/AIDS are two of the greatest public health and humanitarian challenges facing the world today. Infection with HIV not only weakens the immune system leading to AIDS and increasing the risk of opportunistic infections, but also increases the risk of several types of cancer. The enormous biodiversity of marine habitats is mirrored by the molecular diversity of secondary metabolites found in marine animals, plants and microbes which is why this work was designed to assess the anti-HIV and cytotoxic activities of some marine organisms of the Red Sea. Methods The lipophilic fractions of methanolic extracts of thirteen marine organisms collected from the Red Sea (Egypt) were screened for cytotoxicity against two human cancer cell lines; leukaemia (U937) and cervical cancer (HeLa) cells. African green monkey kidney cells (Vero) were used as normal non-malignant control cells. The extracts were also tested for their inhibitory activity against HIV-1 enzymes, reverse transcriptase (RT) and protease (PR). Results Cytotoxicity results showed strong activity of the Cnidarian Litophyton arboreum against U-937 (IC50; 6.5 μg/ml ±2.3) with a selectivity index (SI) of 6.45, while the Cnidarian Sarcophyton trochliophorum showed strong activity against HeLa cells (IC50; 5.2 μg/ml ±1.2) with an SI of 2.09. Other species showed moderate to weak cytotoxicity against both cell lines. Two extracts showed potent inhibitory activity against HIV-1 protease; these were the Cnidarian jelly fish Cassiopia andromeda (IC50; 0.84 μg/ml ±0.05) and the red algae Galaxura filamentosa (2.6 μg/ml ±1.29). It is interesting to note that the most active extracts against HIV-1 PR, C. andromeda and G. filamentosa showed no cytotoxicity in the three cell lines at the highest concentration tested (100 μg/ml). Conclusion The strong cytotoxicity of the soft corals L. arboreum and S. trochliophorum as well as the anti-PR activity of the jelly fish C. andromeda and the red algae G. filamentosa suggests the medicinal potential of crude extracts of these marine organisms. PMID:24568567

Regulation of early mRNA synthesis after bacteriophage T4 infection of Escherichia coli.

PubMed Central

Linder, C H; Fast, R

1975-01-01

Regulation of T4-specific mRNA synthesis was studied during leucine starvation of a leucine-requiring stringent Escherichia coli B strain. This was done by imposing starvation prior to T4 infection and then letting RNA synthesis proceed for different time periods. Rifampin or streptolydigin was added to stop further RNA synthesis, and protein synthesis was restored by addition of leucine. Samples were withdrawn at different times, and the enzyme-forming capacities found that, during conditions which elicit the stringent response in uninfected bacteria, immediate early mRNA is not stringently regulated. This conclusion contradicts the earlier conclusion of others, obtained by measuring incorporation of radioactive uracil; this is explained by the observation of Edlin and Neuhard (1967), confirmed and extended by us to the T4-infected cell, that the incorporation of uracil into RNA of a stringent strain is virtually blocked by amino acid starvation, whereas that of adenine continues at 30 to 50% of the rate seen in the presence of the required amino acid. PMID:1099229

Ring-breaking electron attachment to uracil: following bond dissociations via evolving resonances.

PubMed

Gianturco, Franco A; Sebastianelli, F; Lucchese, R R; Baccarelli, I; Sanna, N

2008-05-07

Calculations are carried out at various distinct energies to obtain both elastic cross sections and S-matrix resonance indicators (poles) from a quantum treatment of the electron scattering from gas-phase uracil. The low-energy region confirms the presence of pi(*) resonances as revealed by earlier calculations and experiments which are compared with the present findings. They turn out to be little affected by bond deformation, while the transient negative ions (TNIs) associated with sigma(*) resonances in the higher energy region ( approximately 8 eV) indeed show that ring deformations which allow vibrational redistribution of the excess electron energy into the molecular target strongly affect these shape resonances: They therefore evolve along different dissociative pathways and stabilize different fragment anions. The calculations further show that the occurrence of conical intersections between sigma(*) and pi(*)-type potential energy surfaces (real parts) is a very likely mechanism responsible for energy transfers between different TNIs. The excess electron wavefunctions for such scattering states, once mapped over the molecular space, provide nanoscopic reasons for the selective breaking of different bonds in the ring region.

Opinion: uracil DNA glycosylase (UNG) plays distinct and non-canonical roles in somatic hypermutation and class switch recombination.

PubMed

Yousif, Ashraf S; Stanlie, Andre; Begum, Nasim A; Honjo, Tasuku

2014-10-01

Activation-induced cytidine deaminase (AID) is essential to class switch recombination (CSR) and somatic hypermutation (SHM). Uracil DNA glycosylase (UNG), a member of the base excision repair complex, is required for CSR. The role of UNG in CSR and SHM is extremely controversial. AID deficiency in mice abolishes both CSR and SHM, while UNG-deficient mice have drastically reduced CSR but augmented SHM raising a possibility of differential functions of UNG in CSR and SHM. Interestingly, UNG has been associated with a CSR-specific repair adapter protein Brd4, which interacts with acetyl histone 4, γH2AX and 53BP1 to promote non-homologous end joining during CSR. A non-canonical scaffold function of UNG, but not the catalytic activity, can be attributed to the recruitment of essential repair proteins associated with the error-free repair during SHM, and the end joining during CSR. © The Japanese Society for Immunology. 2014. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.