Estimating Annual Soil Carbon Loss in Agricultural Peatland Soils Using a Nitrogen Budget Approach

PubMed Central

Kirk, Emilie R.; van Kessel, Chris; Horwath, William R.; Linquist, Bruce A.

2015-01-01

Around the world, peatland degradation and soil subsidence is occurring where these soils have been converted to agriculture. Since initial drainage in the mid-1800s, continuous farming of such soils in the California Sacramento-San Joaquin Delta (the Delta) has led to subsidence of up to 8 meters in places, primarily due to soil organic matter (SOM) oxidation and physical compaction. Rice (Oryza sativa) production has been proposed as an alternative cropping system to limit SOM oxidation. Preliminary research on these soils revealed high N uptake by rice in N fertilizer omission plots, which we hypothesized was the result of SOM oxidation releasing N. Testing this hypothesis, we developed a novel N budgeting approach to assess annual soil C and N loss based on plant N uptake and fallow season N mineralization. Through field experiments examining N dynamics during growing season and winter fallow periods, a complete annual N budget was developed. Soil C loss was calculated from SOM-N mineralization using the soil C:N ratio. Surface water and crop residue were negligible in the total N uptake budget (3 – 4 % combined). Shallow groundwater contributed 24 – 33 %, likely representing subsurface SOM-N mineralization. Assuming 6 and 25 kg N ha-1 from atmospheric deposition and biological N2 fixation, respectively, our results suggest 77 – 81 % of plant N uptake (129 – 149 kg N ha-1) was supplied by SOM mineralization. Considering a range of N uptake efficiency from 50 – 70 %, estimated net C loss ranged from 1149 – 2473 kg C ha-1. These findings suggest that rice systems, as currently managed, reduce the rate of C loss from organic delta soils relative to other agricultural practices. PMID:25822494

Stable and radioactive cesium: A review about distribution in the environment, uptake and translocation in plants, plant reactions and plants' potential for bioremediation.

PubMed

Burger, Anna; Lichtscheidl, Irene

2018-03-15

Radiocesium in water, soil, and air represents a severe threat to human health and the environment. It either acts directly on living organisms from external sources, or it becomes incorporated through the food chain, or both. Plants are at the base of the food chain; it is therefore essential to understand the mechanisms of plants for cesium retention and uptake. In this review we summarize investigations about sources of stable and radioactive cesium in the environment and harmful effects caused by internal and external exposure of plants to radiocesium. Uptake of cesium into cells occurs through molecular mechanisms such as potassium and calcium transporters in the plasma membrane. In soil, bioavailability of cesium depends on the chemical composition of the soil and physical factors such as pH, temperature and tilling as well as on environmental factors such as soil microorganisms. Uptake of cesium occurs also from air through interception and absorption on leaves and from water through the whole submerged surface. We reviewed information about reducing cesium in the vegetation by loss processes, and we extracted transfer factors from the available literature and give an overview over the uptake capacities of 72 plants for cesium from the substratum to the biomass. Plants with high uptake potential could be used to remediate soil and water from radiocesium by accumulation and rhizofiltration. Inside plants, cesium distributes fast between the different plant organs and cells, but cesium in soil is extremely stable and remains for decades in the rhizosphere. Monitoring of contaminated soil therefore has to continue for many decades, and edible plants grown on such soil must continuously be monitored. Copyright © 2017 Elsevier B.V. All rights reserved.

Soil organic matter content effects on dermal pesticide bioconcentration in American toads (Bufo americanus).

PubMed

Van Meter, Robin J; Glinski, Donna A; Henderson, W Matthew; Purucker, S Thomas

2016-11-01

Pesticides have been implicated as a major factor in global amphibian declines and may pose great risk to terrestrial phase amphibians moving to and from breeding ponds on agricultural landscapes. Dermal uptake from soil is known to occur in amphibians, but predicting pesticide availability and bioconcentration across soil types is not well understood. The present study was designed to compare uptake of 5 current-use pesticides (imidacloprid, atrazine, triadimefon, fipronil, and pendimethalin) in American toads (Bufo americanus) from exposure on soils with significant organic matter content differences (14.1% = high organic matter and 3.1% = low organic matter). We placed toads on high- or low-organic matter soil after applying individual current-use pesticides on the soil surface for an 8-h exposure duration. Whole body tissue homogenates and soils were extracted and analyzed using liquid chromatography-mass spectrometry to determine pesticide tissue and soil concentration, as well as bioconcentration factor in toads. Tissue concentrations were greater on the low-organic matter soil than the high-organic matter soil across all pesticides (average ± standard error; 1.23 ± 0.35 ppm and 0.78 ± 0.23 ppm, respectively), and bioconcentration was significantly higher for toads on the low-organic matter soil (analysis of covariance p = 0.002). Soil organic matter is known to play a significant role in the mobility of pesticides and bioavailability to living organisms. Agricultural soils typically have relatively lower organic matter content and serve as a functional habitat for amphibians. The potential for pesticide accumulation in amphibians moving throughout agricultural landscapes may be greater and should be considered in conservation and policy efforts. Environ Toxicol Chem 2016;35:2734-2741. © 2016 SETAC. © 2016 SETAC.

[Accumulation of S, Fe and Cd in rhizosphere of rice and their uptake in rice with different water managements].

PubMed

Zhang, Xue-Xia; Zhang, Xiao-Xia; Zheng, Yu-Ji; Wang, Rong-Ping; Chen, Neng-Chang; Lu, Pu-Xiang

2013-07-01

The interactions between the concentrations of sulfur, iron and cadmium in the rhizosphere and their uptakes in rice (Oryza sativa L. ) were studied using paddy soil which was contaminated by acid mine drainage under five water-management treatments of 60%, 80%, 100% field moisture capacity (FMC), flooded throughout the entire rice growth period and flooded followed by keeping 80% FMC after heading-flowering period. The water managements had no significant influence on the Fe and Cd concentrations in rhizosphere soil in maturity stage, although the concentration of Cd slightly increased with the increase of soil moisture in the tillering stage. However, the uptake of Fe and Cd in rice was obviously related to water managements. The increase of soil moisture enhanced the uptake of Fe, but decreased the uptake of Cd in different organs of rice (roots, stems and leaves, grains) except for Cd uptake of the root in the 60% FMC treatment. However, aerobic treatment after heading-flowering period enhanced Cd uptake in rice in all treatments, but did not influence the uptake of Fe in rice. On the other hand, the increase of soil moisture reduced the concentrations of total sulfur and available sulfur in the rhizosphere soil except for the 60% FMC treatment, which corresponded with the reduction of Cd uptake in rice. And the aerobic treatment promoted Cd uptake in rice, which was also positively related to the increase of total sulfur and available sulfur in rhizosphere soil. Therefore, it was concluded that the uptake and speciation of sulfur in rhizosphere soil other than the change of Fe concentration induced by water management could play an important role in Cd uptake of rice.

Mechanistic roles of soil humus and minerals in the sorption of nonionic organic compounds from aqueous and organic solutions

USGS Publications Warehouse

Chiou, C.T.; Shoup, T.D.; Porter, P.E.

1985-01-01

Mechanistic roles of soil humus and soil minerals and their contributions to soil sorption of nonionic organic compounds from aqueous and organic solutions are illustrated. Parathion and lindane are used as model solutes on two soils that differ greatly in their humic and mineral contents. In aqueous systems, observed sorptive characteristics suggest that solute partitioning into the soil-humic phase is the primary mechanism of soil uptake. By contrast, data obtained from organic solutions on dehydrated soil partitioning into humic phase and adsorption by soil minerals is influenced by the soil-moisture content and by the solvent medium from which the solute is sorbed. ?? 1985.

Soil Fertility Status, Nutrient Uptake, and Maize (Zea mays L.) Yield Following Organic Matters and P Fertilizer Application on Andisol

NASA Astrophysics Data System (ADS)

Minardi, S.; Harieni, S.; Anasrullah, A.; Purwanto, H.

2017-04-01

Objective of this study were to elucidate effects of organic matters and P fertilizer application on soil fertility status, nutrient uptake and maize yield in the Andisol. This experiment consisted of two factors. The first factor comprised of four levels of organic matters input (without organic matter, manure, rice straw, and Gliricidia sepium leaves), with the application dosage 10 t.ha-1 and the second factor comprised of three levels of P fertilizer application (without P addition (control), 50 kg P2O5 ha-1, 100 kg P2O5 ha-1). Results of this study showed that organic matters and P fertilizer application improved soil fertility status, especially pH, soil organic C, cation exchange capacity (CEC), available P which resulted in an increase in P uptake that improve yield of maize. The highest yield of maize (corn cob) was obtained through application Gliricida sepium (8.40 t.ha-1), followed by manure (6.02 t.ha-1) and rice straw (5.87 t.ha-1). Application of 50 kg P2O5 Ha-1 yield was (5.76 t.ha-1) and application of 100 Kg P2O5 Ha-1 yield was (6.12 t.ha-1).

Role of microbial inoculation and industrial by-product phosphogypsum in growth and nutrient uptake of maize (Zea mays L.) grown in calcareous soil.

PubMed

Al-Enazy, Abdul-Aziz R; Al-Oud, Saud S; Al-Barakah, Fahad N; Usman, Adel Ra

2017-08-01

Alkaline soils with high calcium carbonate and low organic matter are deficient in plant nutrient availability. Use of organic and bio-fertilizers has been suggested to improve their properties. Therefore, a greenhouse experiment was conducted to evaluate the integrative role of phosphogypsum (PG; added at 0.0, 10, 30, and 50 g PG kg -1 ), cow manure (CM; added at 50 g kg -1 ) and mixed microbial inoculation (Incl.; Azotobacter chroococcum, and phosphate-solubilizing bacteria Bacillus megaterium var. phosphaticum and Pseudomonas fluorescens) on growth and nutrients (N, P, K, Fe, Mn, Zn and Cu) uptake of maize (Zea mays L.) in calcareous soil. Treatment effects on soil chemical and biological properties and the Cd and Pb availability to maize plants were also investigated. Applying PG decreased soil pH. The soil available P increased when soil was inoculated and/or treated with CM, especially with PG. The total microbial count and dehydrogenase activity were enhanced with PG+CM+Incl. Inoculated soils treated with PG showed significant increases in NPK uptake and maize plant growth. However, the most investigated treatments showed significant decreases in shoot micronutrients. Cd and Pb were not detected in maize shoots. Applying PG with microbial inoculation improved macronutrient uptake and plant growth. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Fresh organic matter of municipal solid waste enhances phytoextraction of heavy metals from contaminated soil.

PubMed

Salati, S; Quadri, G; Tambone, F; Adani, F

2010-05-01

In this study, the ability of the organic fraction of municipal solid wastes (OFMSW) to enhance heavy metal uptake of maize shoots compared with ethylenediamine disuccinic acid (EDDS) was tested on soil contaminated with heavy metals. Soils treated with OFMSW and EDDS significantly increased the concentration of heavy metals in maize shoots (increments of 302%, 66%, 184%, 169%, and 23% for Cr, Cu, Ni, Zn, and Pb with respect to the control and increments of 933%, 482%, 928%, 428%, and 5551% for soils treated with OFMSW and EDDS, respectively). In soil treated with OFMSW, metal uptake was favored because of the high presence of dissolved organic matter (DOM) (41.6x than soil control) that exhibited ligand properties because of the high presence of carboxylic acids. Because of the toxic effect of EDDS on maize plants, soil treated with OFMSW achieved the highest extraction of total heavy metals. Copyright 2009 Elsevier Ltd. All rights reserved.

Influence of organic amendments on nickel phytoextraction and growth effects to Trifolium alexandrinum

NASA Astrophysics Data System (ADS)

Shahid, Muhammad; Sabir, Muhammad; Ghafoor, Abdul

2013-04-01

Heavy metal pollution of soil and other environmental compartments through anthropogenic activities and/or natural processes is a widespread and serious problem confronting society, scientists, and regulators worldwide (Shahid et al., 2011). Among the heavy metals, Ni is an essential heavy metal and plays many functions in living organisms (Khoshgoftarmanesh et al., 2011). The presence of this metal in soil or growth medium may have positive biological effects on plant growth. However, Ni may interfere with various morphological, physiological and biochemical process in plants when its concentration rises to supra-optimal values i.e., 100 mg kg-1 in plants and 420 kg ha-I in soil (Tucker, 2005). The use of organic amendments is a common practice in Pakistan to improve soil fertility. Organic amendments are known to affect chemical speciation and bioavailability of heavy metals and in turn their uptake and toxicity to plants (Shahid et al., 2012). The present study evaluate the influence of organic amendments viz. farm yard manure (FM), poultry manure (PM), press mud (PrM) and activated carbon (AC) on Ni bioavailability in soil as well as its uptake and growth responses of Trifolium alexandrinum. A pot experiment was conducted where T. alexandrinum was exposed to three different Ni level i.e., 30, 60 and 90 mg kg-1 in the form of NiCl2 solution in the presence and absence of organic amendments each applied at 15 g kg-1 soil. The results showed that the effect of organic amendments on Ni bioavailability and uptake by T. alexandrinum depend on Ni levels in soil and amendment type. Application of organic amendments generally increased Ni phytoavailability in soil and Ni uptake by plants at low Ni levels (Ni-0 and Ni-30) but decreased at higher levels (Ni-60 and Ni-90). It is proposed that the soil Ni levels and amendment type must be considered while using these amendments in Ni remediation and risk assessment studies. Keywords: Nickel, organic amendments, bioavailability, Trifolium alexandrinum, plant growth. REFERENCES Shahid M, Pinelli E, Dumat C, 2012. Review of Pb availability and toxicity to plants in relation with metal speciation; role of synthetic and natural organic ligands. Journal of Hazardous Materials, 219-220: 1-12. Shahid M, Pinelli E, Pourrut B, Silvestre J, Dumat C, 2011. Lead-induced genotoxicity to Vicia faba L. roots in relation with metal cell uptake and initial speciation. Ecotoxicology and Environmental Safety, 74(1): 78-84. Khoshgoftarmanesh, A.H. Hosseini, F. and Afyuni, M. (2011) Nickel supplementation effect on the growth, urease activity and urea and nitrate concentrations in lettuce supplied with different nitrogen sources. Sci. Horti., 130, 381-385. Tucker, M.R. Hardy, D.H. and Stokes, C.E. (2005) Heavy metals in North Carolina soils: occurrence and significance. North Carolina Department of Agriculture and Consumer Services, Agronomic Division.

Effect of inorganic and organic copper fertilizers on copper nutrition in Spinacia oleracea and on labile copper in soil.

PubMed

Obrador, Ana; Gonzalez, Demetrio; Alvarez, Jose M

2013-05-22

To ensure an optimal concentration of Cu in food crops, the effectiveness of eight liquid Cu fertilizers was studied in a spinach ( Spinacia oleracea L.) crop grown on Cu-deficient soil under greenhouse conditions. Plant dry matter yields, Cu concentrations in spinach plants (total and morpholino acid (MES)- and ethylenediaminedisuccinic acid (EDDS)-extractable), and Cu uptakes were studied. The behavior of Cu in soil was evaluated by both single and sequential extraction procedures. The highest quantities of Cu in labile forms in the soil, total uptakes, and Cu concentrations in the plants were associated with the application of the two sources that contained Cu chelated by EDTA and/or DTPA. The fertilizers containing these Cu chelates represent a promising approach to achieve high levels of agronomic biofortification. The stronger correlations obtained between low-molecular-weight organic acid-extractable Cu in soil and the Cu concentrations and Cu uptakes by the plants show the suitability of this soil extraction method for predicting Cu available to spinach plants.

Simulated nitrogen deposition reduces CH4 uptake and increases N2O emission from a subtropical plantation forest soil in southern China.

PubMed

Wang, Yongsheng; Cheng, Shulan; Fang, Huajun; Yu, Guirui; Xu, Minjie; Dang, Xusheng; Li, Linsen; Wang, Lei

2014-01-01

To date, few studies are conducted to quantify the effects of reduced ammonium (NH4+) and oxidized nitrate (NO3-) on soil CH4 uptake and N2O emission in the subtropical forests. In this study, NH4Cl and NaNO3 fertilizers were applied at three rates: 0, 40 and 120 kg N ha(-1) yr(-1). Soil CH4 and N2O fluxes were determined twice a week using the static chamber technique and gas chromatography. Soil temperature and moisture were simultaneously measured. Soil dissolved N concentration in 0-20 cm depth was measured weekly to examine the regulation to soil CH4 and N2O fluxes. Our results showed that one year of N addition did not affect soil temperature, soil moisture, soil total dissolved N (TDN) and NH4+-N concentrations, but high levels of applied NH4Cl and NaNO3 fertilizers significantly increased soil NO3(-)-N concentration by 124% and 157%, respectively. Nitrogen addition tended to inhibit soil CH4 uptake, but significantly promoted soil N2O emission by 403% to 762%. Furthermore, NH4+-N fertilizer application had a stronger inhibition to soil CH4 uptake and a stronger promotion to soil N2O emission than NO3(-)-N application. Also, both soil CH4 and N2O fluxes were driven by soil temperature and moisture, but soil inorganic N availability was a key integrator of soil CH4 uptake and N2O emission. These results suggest that the subtropical plantation soil sensitively responses to atmospheric N deposition, and inorganic N rather than organic N is the regulator to soil CH4 uptake and N2O emission.

Effects of soil properties on the uptake of pharmaceuticals into earthworms.

PubMed

Carter, Laura J; Ryan, Jim J; Boxall, Alistair B A

2016-06-01

Pharmaceuticals can enter the soil environment when animal slurries and sewage sludge are applied to land as a fertiliser or during irrigation with contaminated water. These pharmaceuticals may then be taken up by soil organisms possibly resulting in toxic effects and/or exposure of organisms higher up the food chain. This study investigated the influence of soil properties on the uptake and depuration of pharmaceuticals (carbamazepine, diclofenac, fluoxetine and orlistat) in the earthworm Eisenia fetida. The uptake and accumulation of pharmaceuticals into E. fetida changed depending on soil type. Orlistat exhibited the highest pore water based bioconcentration factors (BCFs) and displayed the largest differences between soil types with BCFs ranging between 30.5 and 115.9. For carbamazepine, diclofenac and fluoxetine BCFs ranged between 1.1 and 1.6, 7.0 and 69.6 and 14.1 and 20.4 respectively. Additional analysis demonstrated that in certain treatments the presence of these chemicals in the soil matrices changed the soil pH over time, with a statistically significant pH difference to control samples. The internal pH of E. fetida also changed as a result of incubation in pharmaceutically spiked soil, in comparison to the control earthworms. These results demonstrate that a combination of soil properties and pharmaceutical physico-chemical properties are important in terms of predicting pharmaceutical uptake in terrestrial systems and that pharmaceuticals can modify soil and internal earthworm chemistry which may hold wider implications for risk assessment. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Soil networks become more connected and take up more carbon as nature restoration progresses.

PubMed

Morriën, Elly; Hannula, S Emilia; Snoek, L Basten; Helmsing, Nico R; Zweers, Hans; de Hollander, Mattias; Soto, Raquel Luján; Bouffaud, Marie-Lara; Buée, Marc; Dimmers, Wim; Duyts, Henk; Geisen, Stefan; Girlanda, Mariangela; Griffiths, Rob I; Jørgensen, Helene-Bracht; Jensen, John; Plassart, Pierre; Redecker, Dirk; Schmelz, Rűdiger M; Schmidt, Olaf; Thomson, Bruce C; Tisserant, Emilie; Uroz, Stephane; Winding, Anne; Bailey, Mark J; Bonkowski, Michael; Faber, Jack H; Martin, Francis; Lemanceau, Philippe; de Boer, Wietse; van Veen, Johannes A; van der Putten, Wim H

2017-02-08

Soil organisms have an important role in aboveground community dynamics and ecosystem functioning in terrestrial ecosystems. However, most studies have considered soil biota as a black box or focussed on specific groups, whereas little is known about entire soil networks. Here we show that during the course of nature restoration on abandoned arable land a compositional shift in soil biota, preceded by tightening of the belowground networks, corresponds with enhanced efficiency of carbon uptake. In mid- and long-term abandoned field soil, carbon uptake by fungi increases without an increase in fungal biomass or shift in bacterial-to-fungal ratio. The implication of our findings is that during nature restoration the efficiency of nutrient cycling and carbon uptake can increase by a shift in fungal composition and/or fungal activity. Therefore, we propose that relationships between soil food web structure and carbon cycling in soils need to be reconsidered.

Soil Organic Matter Content Effects on Dermal Pesticide ...

EPA Pesticide Factsheets

Agricultural landscapes serve as active amphibian breeding grounds despite their seemingly poor habitat value. Activity of adults and dispersal of metamorphs to and from agricultural ponds occurs in most species from spring through late summer or early fall, a time that coincides with pesticide applications on farm fields and crops. In terrestrial landscapes, dermal contact with contaminated soil and plant matter may lead to bioconcentration as well as lethal and sublethal effects in amphibians.Although the physiological structure of the amphibian dermis may facilitate pesticide uptake, soil properties may ultimately dictate bioavailability of pesticides in terrestrial habitats. The organic matter fraction of soil readily binds to pesticides, potentially decreasing the availability of pesticides adhering to biological matter. Soil partition coefficient

Soil CO2 venting as one of the mechanisms for tolerance of Zn deficiency by rice in flooded soils.

PubMed

Affholder, Marie-Cecile; Weiss, Dominik J; Wissuwa, Matthias; Johnson-Beebout, Sarah E; Kirk, Guy J D

2017-12-01

We sought to explain rice (Oryza sativa) genotype differences in tolerance of zinc (Zn) deficiency in flooded paddy soils and the counter-intuitive observation, made in earlier field experiments, that Zn uptake per plant increases with increasing planting density. We grew tolerant and intolerant genotypes in a Zn-deficient flooded soil at high and low planting densities and found (a) plant Zn concentrations and growth increased with planting density and more so in the tolerant genotype, whereas the concentrations of other nutrients decreased, indicating a specific effect on Zn uptake; (b) the effects of planting density and genotype on Zn uptake could only be explained if the plants induced changes in the soil to make Zn more soluble; and (c) the genotype and planting density effects were both associated with decreases in dissolved CO 2 in the rhizosphere soil solution and resulting increases in pH. We suggest that the increases in pH caused solubilization of soil Zn by dissolution of alkali-soluble, Zn-complexing organic ligands from soil organic matter. We conclude that differences in venting of soil CO 2 through root aerenchyma were responsible for the genotype and planting density effects. © 2017 John Wiley & Sons Ltd.

Synchrony of net nitrogen mineralization and maize nitrogen uptake following applications of composted and fresh swine manure in the Midwest U.S.

USDA-ARS?s Scientific Manuscript database

Understanding how the quality of organic soil amendments affects the synchrony of nitrogen (N) mineralization and plant N uptake is critical for optimal agronomic N management and environmental protection. Composting solid livestock manures prior to soil application has been promoted to increase N s...

Soil zinc and cadmium availability and uptake by wheat (Triticum aestivum L.) as affected by long-term organic matter management

NASA Astrophysics Data System (ADS)

Grüter, Roman; Costerousse, Benjamin; Mayer, Jochen; Mäder, Paul; Thonar, Cécile; Frossard, Emmanuel; Schulin, Rainer; Tandy, Susan

2017-04-01

Zinc (Zn) deficiency is a widespread problem in human mineral nutrition. It is mainly caused by imbalanced diets with low contents of bioavailable Zn. This is in particular a problem in populations depending on cereals such as wheat (Triticum aestivum L.) as a major source of this essential micronutrient element. Increasing Zn concentrations in wheat grains (biofortification) is therefore an important challenge. At the same time, increased uptake of the toxic heavy metal cadmium (Cd) must be prevented. Agronomic practises influence soil properties such as pH and soil organic carbon and thus also have an indirect effect on phytoavailable soil Zn and Cd concentrations and the uptake of these metals by wheat in addition to direct inputs with fertilizers and other amendments. This study investigated the effects of long-term organic matter management on the phytoavailability of soil Zn and Cd and their uptake by wheat on plots of two Swiss long-term field trials. In one trial (DOK), a farming system comparison trial established in 1978, we compared plots under conventional management with mineral fertilization either in combination or not with farmyard manure application to plots under biodynamic organic management and control plots with no fertilizer application. In the second trial (ZOFE), established in 1949, we compared different fertilizer regimes on conventionally managed plots, including plots with application of mineral fertilizers only, farmyard manure, or compost and control plots with no fertilizer application. Soil physico-chemical and biological properties were determined at the beginning of the growing season. Soil Zn and Cd availabilities were assessed by the Diffusive Gradients in Thin Films (DGT) method and by DTPA extraction before and after wheat cultivation. Additionally, various wheat yield components and element concentrations in shoots and grains were measured at harvest. In the ZOFE trial, soil Zn and Cd concentrations were lowest in the mineral fertilizer and highest in the farmyard manure treatments, where metal export via crop harvests and inputs through farmyard manure dominated soil metal mass balances in the long-term, respectively. DGT-available Zn and Cd correlated negatively with soil pH, total organic carbon and microbial biomass in both trials. They were lowest in the biodynamic and compost treatments and highest in the control treatments. In the ZOFE trial, wheat yields on mineral fertilized plots exceeded the other treatments by more than a factor of two. Cd concentrations in wheat shoots and grains showed a strong positive correlation with DGT-available soil Cd. They were lowest in biodynamic and compost treatments. In contrast, shoot and grain Zn concentrations correlated more closely with total and DTPA-extractable than with DGT-available soil Zn in the ZOFE trial and they poorly correlated with both Zn availability indicators in the DOK trial. Despite these differences, the study reveals that long-term organic matter management has an important influence on the availability of both elements in soil and their uptake by wheat.

Bacterial polyextremotolerant bioemulsifiers from arid soils improve water retention capacity and humidity uptake in sandy soil.

PubMed

Raddadi, Noura; Giacomucci, Lucia; Marasco, Ramona; Daffonchio, Daniele; Cherif, Ameur; Fava, Fabio

2018-05-31

Water stress is a critical issue for plant growth in arid sandy soils. Here, we aimed to select bacteria producing polyextremotolerant surface-active compounds capable of improving water retention and humidity uptake in sandy soils. From Tunisian desert and saline systems, we selected eleven isolates able to highly emulsify different organic solvents. The bioemulsifying activities were stable with 30% NaCl, at 4 and 120 °C and in a pH range 4-12. Applications to a sandy soil of the partially purified surface-active compounds improved soil water retention up to 314.3% compared to untreated soil. Similarly, after 36 h of incubation, the humidity uptake rate of treated sandy soil was up to 607.7% higher than untreated controls. Overall, results revealed that polyextremotolerant bioemulsifiers of bacteria from arid and desert soils represent potential sources to develop new natural soil-wetting agents for improving water retention in arid soils.

Soil moisture variations affect short-term plant-microbial competition for ammonium, glycine, and glutamate

PubMed Central

Månsson, Katarina F; Olsson, Magnus O; Falkengren-Grerup, Ursula; Bengtsson, Göran

2014-01-01

We tested whether the presence of plant roots would impair the uptake of ammonium (), glycine, and glutamate by microorganisms in a deciduous forest soil exposed to constant or variable moisture in a short-term (24-h) experiment. The uptake of 15NH4 and dual labeled amino acids by the grass Festuca gigantea L. and soil microorganisms was determined in planted and unplanted soils maintained at 60% WHC (water holding capacity) or subject to drying and rewetting. The experiment used a design by which competition was tested in soils that were primed by plant roots to the same extent in the planted and unplanted treatments. Festuca gigantea had no effect on microbial N uptake in the constant moist soil, but its presence doubled the microbial uptake in the dried and rewetted soil compared with the constant moist. The drying and rewetting reduced by half or more the uptake by F. gigantea, despite more than 60% increase in the soil concentration of . At the same time, the amino acid and -N became equally valued in the plant uptake, suggesting that plants used amino acids to compensate for the lower acquisition. Our results demonstrate the flexibility in plant-microbial use of different N sources in response to soil moisture fluctuations and emphasize the importance of including transient soil conditions in experiments on resource competition between plants and soil microorganisms. Competition between plants and microorganisms for N is demonstrated by a combination of removal of one of the potential competitors, the plant, and subsequent observations of the uptake of N in the organisms in soils that differ only in the physical presence and absence of the plant during a short assay. Those conditions are necessary to unequivocally test for competition. PMID:24772283

Effects of Dissolved Organic Matter on Uptake and Translocation of Lead in Brassica chinensis and Potential Health Risk of Pb

PubMed Central

Li, Renying; Zhou, Zhigao; Xie, Xiaojin; Li, Yingxue; Zhang, Yaohong; Xu, Xianghua

2016-01-01

Dissolved organic matter (DOM) can affect the bioavailability of heavy metals in soil, especially in soils used for vegetable production, where intensive organic fertilization is applied. The present study examined the effects of DOM derived from commercial organic fertilizers (COF), cow manure (COM) and chicken manure (CHM), on uptake and translocation of lead (Pb) in Brassica chinensis in a pot experiment. The results indicate that DOM derived from CHM (DOMCHM) significantly increased Pb concentrations in roots of B. chinensis (p < 0.05). By contrast, there was no significant increase in shoot Pb concentration for all the DOM treatments except the high DOMCHM treatment in the soil with 800 mg·kg−1 Pb. Consistent with the Pb concentrations in shoots, translocation factor of Pb from soil to shoot and specific lead uptake (SLU) by B. chinensis were significantly increased for the high DOMCHM treatment in the high Pb soil, but not for other DOM treatments. Based on the results of this study, the application of DOM to the soil with 800 mg·kg−1 Pb could result in an increase in total Pb annually ingested by the inhabitants of Nanjing City in the range of 2018–9640 kg, with the highest estimates resulting from the high DOMCHM treatment. This study suggests the risk may rise under some conditions as indicated in the high DOMCHM treatment and high Pb pollution level. PMID:27399753

Microbiology and Moisture Uptake of Desert Soils

NASA Astrophysics Data System (ADS)

Kress, M. E.; Bryant, E. P.; Morgan, S. W.; Rech, S.; McKay, C. P.

2005-12-01

We have initiated an interdisciplinary study of the microbiology and water content of desert soils to better understand microbial activity in extreme arid environments. Water is the one constituent that no organism can live without; nevertheless, there are places on Earth with an annual rainfall near zero that do support microbial ecosystems. These hyperarid deserts (e.g. Atacama and the Antarctic Dry Valleys) are the closest terrestrial analogs to Mars, which is the subject of future exploration motivated by the search for life beyond Earth. We are modeling the moisture uptake by soils in hyperarid environments to quantify the environmental constraints that regulate the survival and growth of micro-organisms. Together with the studies of moisture uptake, we are also characterizing the microbial population in these soils using molecular and culturing methods. We are in the process of extracting DNA from these soils using MoBio extraction kits. This DNA will be used as a template to amplify bacterial and eukaryotic ribosomal DNA to determine the diversity of the microbial population. We also have been attempting to determine the density of organisms by culturing on one-half strength R2A agar. The long-range goal of this research is to identify special adaptations of terrestrial life that allow them to inhabit extreme arid environments, while simultaneously quantifying the environmental parameters that enforce limits on these organisms' growth and survival.

Heavy Metal Uptake by Herbs. IV. Influence of Soil pH on the Content of Heavy Metals in Valeriana officinalis L.

PubMed

Adamczyk-Szabela, Dorota; Markiewicz, Justyna; Wolf, Wojciech M

The aim of the study was to estimate the influence of soil pH on the uptake of copper, zinc, and manganese by Valeriana officinalis . Preliminary studies involved soil analyses to determine acidity, organic matter content, and copper, zinc, and manganese total and bioavailable forms. The study involved atomic absorption spectrometry to determine the concentration of the elements, and mineral soil of pH = 5.1 was used in the study, as being typical for central Poland. The copper, zinc, and manganese contents were determined in plants grown in soils which had been modified to cover a wide range of pH values 3÷13. The intensity of germination was strongly pH dependent with the highest yield obtained in original, unmodified soil. Surprisingly, high soil alkalinity stimulated copper and manganese uptake while at the same time resulting in a decrease in zinc content.

Organic matter-solid phase interactions are critical for predicting arsenic release and plant uptake in Bangladesh paddy soils.

PubMed

Williams, Paul N; Zhang, Hao; Davison, William; Meharg, Andrew A; Hossain, Mahmud; Norton, Gareth J; Brammer, Hugh; Islam, M Rafiqul

2011-07-15

Agroecological zones within Bangladesh with low levels of arsenic in groundwater and soils produce rice that is high in arsenic with respect to other producing regions of the globe. Little is known about arsenic cycling in these soils and the labile fractions relevant for plant uptake when flooded. Soil porewater dynamics of field soils (n = 39) were recreated under standardized laboratory conditions to investigate the mobility and interplay of arsenic, Fe, Si, C, and other elements, in relation to rice grain element composition, using the dynamic sampling technique diffusive gradients in thin films (DGT). Based on a simple model using only labile DGT measured arsenic and dissolved organic carbon (DOC), concentrations of arsenic in Aman (Monsoon season) rice grain were predicted reliably. DOC was the strongest determinant of arsenic solid-solution phase partitioning, while arsenic release to the soil porewater was shown to be decoupled from that of Fe. This study demonstrates the dual importance of organic matter (OM), in terms of enhancing arsenic release from soils, while reducing bioavailability by sequestering arsenic in solution.

Effects of different fertilizers on growth and nutrient uptake of Lolium multiflorum grown in Cd-contaminated soils.

PubMed

Liu, Mohan; Li, Yang; Che, Yeye; Deng, Shaojun; Xiao, Yan

2017-10-01

This study aimed to explore the effects of different fertilizers and their combinations on growth and nutrient and Cd uptake of Lolium multiflorum. Compared with control treatment, chemical fertilizer, organic manure, and their conjunctions with biofertilizer increased shoot biomass. Biofertilizers were found to cause significant reductions in shoot biomass of plants grown in organic manure-treated and control soil. Decreased soil-available N and P and shoot N and K concentrations in biofertilizer amendment treatments indicated that plant growth and nutrient absorption might be negatively affected under nutrient deficiency conditions. Elevated shoot biomasses contributed to the highest shoot Cd contents in chemical fertilizer and chemical fertilizer + biofertilizer treatments among all treatments. But the maximum translocation efficiency occurred in biofertilizer + chemical fertilizer + organic manure treatment, followed by organic manure and chemical fertilizer + organic manure treatments. Based on the results, we can conclude that the application of only the biofertilizer Bacillus subtilis should be avoided in nutrient-limited soils. Chemical fertilizer application could benefit the amount of Cd in shoots, and organic manure application and its combinations could result in the higher translocation efficiency.

Soil sorption of organic vapors and effects of humidity on sorptive mechanism and capacity

USGS Publications Warehouse

Chiou, C.T.; Shoup, T.D.

1985-01-01

Vapor sorption isotherms on dry Woodburn soil at 20-30??C were determined for benzene, chlorobenzene, p-dichlorobenzene, m-dichlorobenzene, 1,2,4-trichlorobenzene, and water as single vapors and for benzene, m-dichlorobenzene, and 1,2,4-trichlorobenzene as functions of relative humidity (RH). Isotherms for all compounds on dry soil samples are distinctively nonlinear, with water showing the greatest capacity. Water vapor sharply reduced the sorption capacities of organic compounds with the dry soil; on water-saturated soil, the reduction was about 2 orders of magnitude. The markedly higher sorption of organic vapors at subsaturation humidities is attributed to adsorption on the mineral matter, which predominates over the simultaneous uptake by partition into the organic matter. At about 90% RH, the sorption capacities of organic compounds become comparable to those in aqueous systems. The effect of humidity is attributed to adsorptive displacement by water of organics adsorbed on the mineral matter. A small residual uptake is attributed to the partition into the soil-organic phase that has been postulated in aqueous systems. The results are essentially in keeping with the model that was previously proposed for sorption on the soil from water and from organic solvents.Vapor sorption isotherms on dry Woodburn soil at 20-30 degree C were determined for benzene, chlorobenzene, p-dichlorobenzene, m-dichlorobenzene, 1,2,4-trichlorobenzene, and water as single vapors and for benzene, m-dichlorobenzene, and 1,2,4-trichlorobenzene as functions of relative humidity (RH). Isotherms for all compounds on dry soil samples are distinctively nonlinear, with water showing the greatest capacity. Water vapor sharply reduced the sorption capacities of organic compounds with the dry soil; on water-saturated soil, the reduction was about 2 orders of magnitude. The markedly higher sorption of organic vapors at subsaturation humidities is attributed to adsorption on the mineral matter. The results are essentially in keeping with the model that was previously proposed for sorption on the soil from water and from organic solvents.

Transfer of wastewater associated pharmaceuticals and personal care products to crop plants from biosolids treated soil.

PubMed

Wu, Chenxi; Spongberg, Alison L; Witter, Jason D; Sridhar, B B Maruthi

2012-11-01

The plant uptake of emerging organic contaminants such as pharmaceuticals and personal care products (PPCPs) is receiving increased attention. Biosolids from municipal wastewater treatment have been previously identified as a major source for PPCPs. Thus, plant uptake of PPCPs from biosolids applied soils needs to be understood. In the present study, the uptake of carbamazepine, diphenhydramine, and triclocarban by five vegetable crop plants was examined in a field experiment. At the time of harvest, three compounds were detected in all plants grown in biosolids-treated soils. Calculated root concentration factor (RCF) and shoot concentration factor (SCF) are the highest for carbamazepine followed by triclocarban and diphenhydramine. Positive correlation between RCF and root lipid content was observed for carbamazepine but not for diphenhydramine and triclocarban. The results demonstrate the ability of crop plants to accumulate PPCPs from contaminated soils. The plant uptake processes of PPCPs are likely affected by their physico-chemical properties, and their interaction with soil. The difference uptake behavior between plant species could not solely be attributed to the root lipid content. Copyright © 2012 Elsevier Inc. All rights reserved.

Abiotic uptake of gases by organic soils

NASA Astrophysics Data System (ADS)

Smagin, A. V.

2007-12-01

Methodological and experimental studies of the abiotic uptake of gaseous substances by organic soils were performed. The static adsorption method of closed vessels for assessing the interaction of gases with the solid and liquid soil phases and the dynamic method of determining the sorption isotherms of gases by soils were analyzed. The theoretical substantiation of the methods and their practical implementations on the basis of a PGA-7 portable gas analyzer (Russia) were considered. Good agreement between the equilibrium sorption isotherms of the gases and the Langmuir model was revealed; for the real ranges of natural gas concentrations, this model can be reduced to the linear Henry equation. The limit values of the gas sorption (Langmuir monolayer capacity) are typical for dry samples; they vary from 670 4000 g/m3 for methane and oxygen to 20 000 25 000 g/m3 for carbon dioxide. The linear distribution coefficients of gases between the solid and gas phases of organic soils (Henry constants) are 8 18 units for poorly sorbed gases (O2, CH4) and 40 60 units for CO2. The kinetics of the chemicophysical uptake of gases by the soil studied is linear in character and obeys the relaxation kinetic model of the first order with the corresponding relaxation constants, which vary from 1 h -1 in wet samples to 10 h -1 in dry samples.

Stochiometry, Microbial community composition and decomposition, a modelling analysis

NASA Astrophysics Data System (ADS)

Berninger, Frank; Zhou, Xuan; Aaltonen, Heidi; Köster, Kajar; Heinonsalo, Jussi; Pumpanen, Jukka

2017-04-01

Enzyme activity based litter decomposition models describe the decomposition of soil organic matter as a function of microbial biomass and its activity. In these models, decomposition depends largely on microbial and litter stoïchiometry. We, used the model of Schimel and Weintraub (Soil Biology & Biochemistry 35 (2003) 549-563 largely relying on the modification of Waring B et al. Ecology Letters, (2013) 16: 887-894) and we modified the model to include bacteria, fungi and mycorrizal fungi as decomposer groups assuming different stochiometries. The model was tested against previously published data from a fire chronosequence from northern Finland. The model reconstructed well the development of soil organic matter, microbial biomasses, enzyme actitivies with time after fire. In a theoretical model analysis we tried to understand how the exchange of carbon and nitrogen between mycorrhiza and the plant as different litter stoïchiometries interact. The results indicate that if a high percentage of fungal N uptake is transferred to the plant mycorrhizal biomass will decrease drastically and does decrease, due to low mycorrhizal biomasses, the N uptake of plants. If a lower proportion of the fungal N uptake is transferred to the plant the N uptake of the plants is reasonable stable while the proportion of mycorrhiza of the total fungal biomass varies. The model is also able to simulate priming of soil organic matter decomposition.

Microbial utilization of low molecular weight organics in soil depends on the substances properties

NASA Astrophysics Data System (ADS)

Gunina, Anna

2016-04-01

Utilization of low molecular weight organic substances (LMWOS) in soil is regulated by microbial uptake from solution and following incorporation of into specific cell cycles. Various chemical properties of LMWOS, namely oxidation state, number of carbon (C) atoms, number of carboxylic (-COOH) groups, can affect their uptake from soil solution and further microbial utilization. The aim of the study was to trace the initial fate (including the uptake from soil solution and utilization by microorganisms) of three main classes of LMWOS, having contrast properties - sugars, carboxylic and amino acids. Top 10 cm of mineral soil were collected under Silver birch stands within the Bangor DIVERSE experiment, UK. Soil solution was extracted by centrifugation at 4000 rpm during 15 min. Soil was spiked with 14C glucose or fructose; malic, succinic or formic acids; alanine or glycine. No additional non-labeled LMWOS were added. 14C was traced in the dissolved organic matter (DOM), CO2, cytosol and soil organic matter (SOM) during one day. To estimate half-life times (T1 /2)of LMWOS in soil solution and in SOM pools, the single and double first order kinetic equations were fitted to the uptake and mineralization dynamics, respectively. The LMWOS T1 /2in DOM pool varied between 0.6-5 min, with the highest T1 /2for sugars (3.7 min) and the lowest for carboxylic acids (0.6-1.4 min). Thus, initial uptake of LMWOS is not a limiting step of microbial utilization. The T1 /2 of carboxylic and amino acids in DOM were closely related with oxidation state, showing that reduced substances remain in soil solution longer, than oxidized. The initial T1 /2 of LMWOS in SOM ranged between 30-80 min, with the longest T1 /2 for amino acids (50-80 min) and the shortest for carboxylic acids (30-48 min). These T1 /2values were in one-two orders of magnitude higher than LMWOS T1 /2 in soil solution, pointing that LMWOS mineralization occur with a delay after the uptake. Absence of correlations between LMWOS T1 /2 in SOM with C oxidation state, number of C atoms or number of -COOH groups in LMWOS demonstrates that intercellular metabolic pathways are more important. Mineralization of LMWOS amounted for 20-90% of total applied amount. Maximum mineralization was found for carboxylic acids and minimum for sugars, whereas 14C incorporation into cytosol and SOM pools followed the opposite trend. There were close positive correlation between the portion of mineralized C and substance oxidation state, but negative with the amount of C incorporated into the cytosol and SOM pools. This shows that substance properties affect the final partitioning of LMWOS-C between mineralized and utilized pools. Thus, initial uptake of LMWOS from soil solution and final partitioning of LMWOS-C between the mineralized and microbially utilized pools are related to their chemical properties. In contrast, LMWOS mineralization dynamics is regulated by intercellular metabolization pathways.

Stabilization of metal(loid)s in two contaminated agricultural soils: Comparing biochar to its non-pyrolysed source material.

PubMed

Trakal, Lukáš; Raya-Moreno, Irene; Mitchell, Kerry; Beesley, Luke

2017-08-01

Two metal(loid) contaminated agricultural soils were amended with grape stalk (wine production by-product)-derived biochar as well as its pre-pyrolysed origin material, to investigate their geochemical impacts on As, Cr, Cu and Zn. Detailed physico-chemical evaluation combined with a column leaching test determined the retention of metal(loid)s from soil solution by each amendments. A pot experiment measured metal(loid)s in soil pore water and their uptake to ryegrass when the amendments were mixed into soils at 1 and 5% (w/w). Total Cr and Zn concentrations were reduced furthest in column leachates by the addition of raw material and biochar respectively, compared to the untreated soil; Cr(III) was the predominant specie initially due to rapid acidification of leachates and organic complexation resulting from raw material addition. Loadings of metal(loid)s to the amendments recovered from the post-leached columns were in the order Cu » Zn > Cr ≈ As. In the pot test ryegrass Cr uptake was initiated by the addition of both amendments, compared to the untreated soil, whereas only biochar addition resulted in significant increases in Zn uptake, explained by its significant enhancement of ryegrass biomass yield, especially at 5% dosage; raw material addition significantly decreased biomass yields. Inconsistent relationships between pore water parameters and ryegrass uptake were common to both soils investigated. Therefore, whilst both amendments modified soil metal(loid) geochemistry, their effects differed fundamentally; in environmental risk management terms these results highlight the need to investigate the detailed geochemical response of contaminated soils to diverse organic amendment additions. Copyright © 2017 Elsevier Ltd. All rights reserved.

The surface area of soil organic matter

USGS Publications Warehouse

Chiou, C.T.; Lee, J.-F.; Boyd, S.A.

1990-01-01

The previously reported surface area for soil organic matter (SOM) of 560-800 m2/g as determined by the ethylene glycol (EG) retention method was reexamined by the standard BET method based on nitrogen adsorption at liquid nitrogen temperature. Test samples consisted of two high organic content soils, a freeze-dried soil humic acid, and an oven-dried soil humic acid. The measured BET areas for these samples were less than 1 m2/g, except for the freeze-dried humic acid. The results suggest that surface adsorption of nonionic organic compounds by SOM is practically insignificant in comparison to uptake by partition. The discrepancy between the surface areas of SOM obtained by BET and EG methods was explained in terms of the 'free surface area' and the 'apparent surface area' associated with these measurements.The previously reported surface area for soil organic matter (SOM) of 560-800 m2/g as determined by the ethylene glycol (EG) retention method was reexamined by the standard BET method based on nitrogen adsorption at liquid nitrogen temperature. Test samples consisted of two high organic content soils, a freeze-dried soil humic acid, and an oven-dried soil humic acid. The measured BET areas for these samples were less than 1 m2/g, except for the freeze-dried humic acid. The results suggest that surface adsorption of nonionic organic compounds by SOM is practically insignificant in comparison to uptake by partition. The discrepancy between the surface areas of SOM obtained by BET and EG methods was explained in terms of the 'free surface area' and the 'apparent surface area' associated with these measurements.

[Effects of phosphorus sources on phosphorus fractions in rhizosphere soil of wild barley genotypes with high phosphorus utilization efficiency].

PubMed

Cai, Qiu-Yan; Zhang, Xi-Zhou; Li, Ting-Xuan; Chen, Guang-Deng

2014-11-01

High P-efficiency (IS-22-30, IS-22-25) and low P-efficiency (IS-07-07) wild barley cultivars were chosen to evaluate characteristics of phosphorus uptake and utilization, and properties of phosphorus fractions in rhizosphere and non-rhizosphere in a pot experiment with 0 (CK) and 30 mg P · kg(-1) supplied as only Pi (KH2PO4), only Po (phytate) or Pi + Po (KH2PO4+ phytate). The results showed that dry matter and phosphorus accumulation of wild barley in the different treatments was ranked as Pi > Pi + Po > Po > CK. In addition, dry matter yield and phosphorus uptake of wild barley with high P-efficiency exhibited significantly greater than that with low P-efficiency. The concentration of soil available phosphorus was significantly different after application of different phosphorus sources, which was presented as Pi > Pi + Po > Po. The concentration of soil available phosphorus in high P-efficiency wild barley was significantly higher than that of low P-efficiency in the rhizosphere soil. There was a deficit in rhizosphere available phosphorus of high P-efficiency wild barley, especially in Pi and Pi+Po treatments. The inorganic phosphorus fractions increased with the increasing Pi treatment, and the concentrations of inorganic phosphorus fractions in soil were sorted as follows: Ca10-P > O-P > Fe-P > Al-P > Ca2-P > Ca8-P. The contents of Ca2-P and Ca8-P for high P-efficiency wild barley showed deficits in rhizosphere soil under each phosphorus source treatment. In addition, enrichment of Al-P and Fe-P was observed in Pi treatment in rhizosphere soil. The concentrations of organic phosphorus fractions in soil were sorted as follows: moderate labile organic phosphorus > moderate resistant, resistant organic phosphorus > labile organic phosphorus. The labile and moderate labile organic phosphorus enriched in rhizosphere soil and the greatest enrichment appeared in Pi treatment. Furthermore, the concentrations of moderate resistant organic phosphorus and resistant organic phosphorus decreased in rhizosphere soil. The concentrations of labile and moderate labile organic phosphorus in rhizosphere soil of high P-efficiency wild barley were significantly higher than that of low P-efficiency wild barley in each phosphorus source treatment. However, moderate resistant organic phosphorus and resistant organic phosphorus concentrations had no significant difference between the two genotypes. Wild barley with high P-efficiency demonstrated a greater ability of mobilization and uptake Ca2-P, Ca8-P, Al-P and labile organic phosphorus than that with low P-efficiency under Pi deficiency.

Nitrogen Cycling in the Mycorrhizosphere: Multipartite Interactions and Plant Nitrogen Uptake Vary with Fertilization Legacy

NASA Astrophysics Data System (ADS)

Hestrin, R.; Lehmann, J.

2017-12-01

Soil microbes play an important role in rhizosphere nutrient cycling and plant productivity. In this study, the contributions of soil microbes to organic matter mineralization and plant nitrogen uptake were investigated using incubation and microcosm experiments. Microbial inocula included arbuscular mycorrhizal fungi and microbial communities sampled across a long-term gradient of nitrogen fertilization. Stable isotopes, nanoSIMS imaging, and phospholipid fatty acid analysis were used to track carbon and nitrogen movement from organic matter into microbes, mycorrhizal fungi, and plants. Results show that multipartite relationships between plants and microbes increased plant growth and access to nitrogen from organic matter, and that nitrogen fertilization history had a lasting effect on microbial contributions to fungal and plant nitrogen uptake. This research links rhizosphere ecology and land management with terrestrial biogeochemistry.

Genotypic variation and mechanism in uptake and translocation of perfluorooctanoic acid (PFOA) in lettuce (Lactuca sativa L.) cultivars grown in PFOA-polluted soils.

PubMed

Xiang, Lei; Chen, Lei; Yu, Le-Yi; Yu, Peng-Fei; Zhao, Hai-Ming; Mo, Ce-Hui; Li, Yan-Wen; Li, Hui; Cai, Quan-Ying; Zhou, Dong-Mei; Wong, Ming-Hung

2018-05-02

The cultivation of crop cultivars with low pollutant accumulation is an important strategy to reduce the potential health risks of food produced from polluted soils. In this study, we identified three loose-leaf lettuce cultivars with low accumulation of perfluorooctanoic acid (PFOA), a highly toxic and persistent organic pollutant. PFOA concentrations in the shoots of low-PFOA cultivars were 3.7-5.5-fold lower than those of high-PFOA cultivars. The identification of low-PFOA cultivars could contribute to ensuring food safety despite cultivation in highly polluted soils (1 mg/kg) based on the tolerable daily PFOA intake (1.5 μg/kg/d). We detected lower desorbing fractions of PFOA in rhizosphere soil, lower bioconcentration factors, and higher distribution in the cell walls and organelles of roots in low-PFOA cultivars, all of which are key factors in limiting PFOA uptake and translocation from soil to shoots, than in high-PFOA cultivars. This study reveals the mechanism of PFOA uptake from soil to crop and lays a foundation for establishing a cost-effective strategy to plant crops in polluted soil and reduce exposure risk due to persistent organic pollutants in crops. Copyright © 2018 Elsevier B.V. All rights reserved.

Soil-modified carbon paste electrode: a useful tool in environmental assessment of heavy metal ion binding interactions.

PubMed

Svegl, I G; Ogorevc, B

2000-08-01

Carbon paste electrodes (CPEs) modified with different soils in their native form were prepared to create a soil-like solid phase suitable for application in studies of heavy metal ion uptake and binding interactions. The preparation of CPEs modified with five different soils was examined and their heavy metal ion uptake behavior investigated using a model Cu(II) aqueous solution. Metal ions were accumulated under open circuit conditions and were determined after a medium exchange using differential pulse anodic stripping voltammetry, applying preelectrolysis at -0.7 V. The soil-modified CPE accumulation behavior, including the linearity of the current response versus Cu(II) concentration, the influence of the pH on the solution, and the uptake kinetics, was thoroughly investigated. The correlation between the soil-modified CPE uptake capability and the standard soil parameters, such as ion exchange capacity, soil pH, organic matter and clay content, were evaluated for all five examined soils. The influence of selected endogenous cations (K(I), Ca(II), Fe(III)) on the transfer of Cu(II) ions from a solution to the simulated soil solid phase was examined and is discussed. Preliminary examinations of the soil-modified CPE uptake behavior with some exogenous heavy metal ions of strong environmental interest (Pb(II), Hg(II), Cd(II) and Ag(I)) are also presented. This work demonstrates some attractive possibilities for the application of a soil-modified CPE in studying soil-heavy metal ion binding interactions, with a further potential use as a new environmental sensor appropriate for fist on-site testing of polluted soils.

Summer cover crops and soil amendments to improve growth and nutrient uptake of okra

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Q.R.; Li, Y.C.; Klassen, W.

2006-04-15

A pot experiment with summer cover crops and soil amendments was conducted in two consecutive years to elucidate the effects of these cover crops and soil amendments on 'Clemson Spineless 80' okra (Abelmoschus esculentus) yields and biomass production, and the uptake and distribution of soil nutrients and trace elements. The cover crops were sunn hemp (Crotalaria juncea), cowpea (Vigna unguiculata), velvetbean (Mucuna deeringiana), and sorghum sudan-grass (Sorghum bicolor x S. bicolor var. sudanense) with fallow as the control. The organic soil amendments were biosolids (sediment from wastewater plants), N-Viro Soil (a mixture of biosolids and coal ash), coal ash (amore » combustion by-product from power plants), co-compost (a mixture of 3 biosolids: 7 yard waste), and yard waste compost (mainly from leaves and branches of trees and shrubs, and grass clippings) with a soil-incorporated cover crop as the control. As a subsequent vegetable crop, okra was grown after the cover crops, alone or together with the organic soil amendments, had been incorporated. All of the cover crops, except sorghum sudangrass in 2002-03, significantly improved okra fruit yields and the total biomass production. Both cover crops and soil amendments can substantially improve nutrient uptake and distribution. The results suggest that cover crops and appropriate amounts of soil amendments can be used to improve soil fertility and okra yield without adverse environmental effects or risk of contamination of the fruit. Further field studies will be required to confirm these findings.« less

DIFFERENTIATION IN N15 UPTAKE AND THE ORGANIZATION OF AN ARCTIC TUNDRA PLANT COMMUNITY

EPA Science Inventory

We used N15 soil-labeling techniques to examine how the dominant species in a N-limited, tussock tundra plant community partitioned soil N, and how such partitioning may contribute to community organization. The five most abundant species were well differentiated with respect to...

Soil moisture variations affect short-term plant-microbial competition for ammonium, glycine, and glutamate.

PubMed

Månsson, Katarina F; Olsson, Magnus O; Falkengren-Grerup, Ursula; Bengtsson, Göran

2014-04-01

We tested whether the presence of plant roots would impair the uptake of ammonium ([Formula: see text]), glycine, and glutamate by microorganisms in a deciduous forest soil exposed to constant or variable moisture in a short-term (24-h) experiment. The uptake of (15)NH4 and dual labeled amino acids by the grass Festuca gigantea L. and soil microorganisms was determined in planted and unplanted soils maintained at 60% WHC (water holding capacity) or subject to drying and rewetting. The experiment used a design by which competition was tested in soils that were primed by plant roots to the same extent in the planted and unplanted treatments. Festuca gigantea had no effect on microbial N uptake in the constant moist soil, but its presence doubled the microbial [Formula: see text] uptake in the dried and rewetted soil compared with the constant moist. The drying and rewetting reduced by half or more the [Formula: see text] uptake by F. gigantea, despite more than 60% increase in the soil concentration of [Formula: see text]. At the same time, the amino acid and [Formula: see text]-N became equally valued in the plant uptake, suggesting that plants used amino acids to compensate for the lower [Formula: see text] acquisition. Our results demonstrate the flexibility in plant-microbial use of different N sources in response to soil moisture fluctuations and emphasize the importance of including transient soil conditions in experiments on resource competition between plants and soil microorganisms. Competition between plants and microorganisms for N is demonstrated by a combination of removal of one of the potential competitors, the plant, and subsequent observations of the uptake of N in the organisms in soils that differ only in the physical presence and absence of the plant during a short assay. Those conditions are necessary to unequivocally test for competition.

Competition for nitrogen between Fagus sylvatica and Acer pseudoplatanus seedlings depends on soil nitrogen availability.

PubMed

Li, Xiuyuan; Rennenberg, Heinz; Simon, Judy

2015-01-01

Competition for nitrogen (N), particularly in resource-limited habitats, might be avoided by different N acquisition strategies of plants. In our study, we investigated whether slow-growing European beech and fast-growing sycamore maple seedlings avoid competition for growth-limiting N by different N uptake patterns and the potential alteration by soil N availability in a microcosm experiment. We quantified growth and biomass indices, (15)N uptake capacity and N pools in the fine roots. Overall, growth indices, N acquisition and N pools in the fine roots were influenced by species-specific competition depending on soil N availability. With inter-specific competition, growth of sycamore maple reduced regardless of soil N supply, whereas beech only showed reduced growth when N was limited. Both species responded to inter-specific competition by alteration of N pools in the fine roots; however, sycamore maple showed a stronger response compared to beech for almost all N pools in roots, except for structural N at low soil N availability. Beech generally preferred organic N acquisition while sycamore maple took up more inorganic N. Furthermore, with inter-specific competition, beech had an enhanced organic N uptake capacity, while in sycamore maple inorganic N uptake capacity was impaired by the presence of beech. Although sycamore maple could tolerate the suboptimal conditions at the cost of reduced growth, our study indicates its reduced competitive ability for N compared to beech.

A novel and simple model of the uptake of organic chemicals by vegetation from air and soil.

PubMed

Hung, H; Mackay, D

1997-09-01

A novel and simple three-compartment fugacity model has been developed to predict the kinetics and equilibria of the uptake of organic chemicals in herbaceous agricultural plants at various times, including the time of harvest using only readily available input data. The chemical concentration in each of the three plant compartments leaf, stem which includes fruits and seeds, and root) is expressed as a function of both time and chemical concentrations in soil and air. The model was developed using the fugacity concept; however, the final expressions are presented in terms of concentrations in soil and air, equilibrium partition coefficients and a set of transport and transformation half-lives. An illustrative application of the model is presented which describes the uptake of bromacil by a soybean plant under hydroponic conditions. The model, which is believed to give acceptably accurate prediction of the distribution of chemicals among plant tissues, air and soil, may be used for the assessment of exposure to, and risk from contaminants consumed either directly from vegetation or indirectly in natural and agricultural food chains.

Bioavailability of xenobiotics in the soil environment.

PubMed

Katayama, Arata; Bhula, Raj; Burns, G Richard; Carazo, Elizabeth; Felsot, Allan; Hamilton, Denis; Harris, Caroline; Kim, Yong-Hwa; Kleter, Gijs; Koedel, Werner; Linders, Jan; Peijnenburg, J G M Willie; Sabljic, Aleksandar; Stephenson, R Gerald; Racke, D Kenneth; Rubin, Baruch; Tanaka, Keiji; Unsworth, John; Wauchope, R Donald

2010-01-01

It is often presumed that all chemicals in soil are available to microorganisms, plant roots, and soil fauna via dermal exposure. Subsequent bioaccumulation through the food chain may then result in exposure to higher organisms. Using the presumption of total availability, national governments reduce environmental threshold levels of regulated chemicals by increasing guideline safety margins. However, evidence shows that chemical residues in the soil environment are not always bioavailable. Hence, actual chemical exposure levels of biota are much less than concentrations present in soil would suggest. Because "bioavailability" conveys meaning that combines implications of chemical sol persistency, efficacy, and toxicity, insights on the magnitude of a chemicals soil bioavailability is valuable. however, soil bioavailability of chemicals is a complex topic, and is affected by chemical properties, soil properties, species exposed, climate, and interaction processes. In this review, the state-of-art scientific basis for bioavailability is addressed. Key points covered include: definition, factors affecting bioavailability, equations governing key transport and distributive kinetics, and primary methods for estimating bioavailability. Primary transport mechanisms in living organisms, critical to an understanding of bioavailability, also presage the review. Transport of lipophilic chemicals occurs mainly by passive diffusion for all microorganisms, plants, and soil fauna. Therefore, the distribution of a chemical between organisms and soil (bioavailable proportion) follows partition equilibrium theory. However, a chemical's bioavailability does not always follow partition equilibrium theory because of other interactions with soil, such as soil sorption, hysteretic desorption, effects of surfactants in pore water, formation of "bound residue", etc. Bioassays for estimating chemical bioavailability have been introduced with several targeted endpoints: microbial degradation, uptake by higher plants and soil fauna, and toxicity to organisms. However, there bioassays are often time consuming and laborious. Thus, mild extraction methods have been employed to estimate bioavailability of chemicals. Mild methods include sequential extraction using alcohols, hexane/water, supercritical fluids (carbon dioxide), aqueous hydroxypropyl-beta-cyclodextrin extraction, polymeric TENAX beads extraction, and poly(dimethylsiloxane)-coated solid-phase microextraction. It should be noted that mild extraction methods may predict bioavailability at the moment when measurements are carried out, but not the changes in bioavailability that may occur over time. Simulation models are needed to estimate better bioavailability as a function of exposure time. In the past, models have progressed significantly by addressing each group of organisms separately: microbial degradation, plant uptake via evapotranspiration processes, and uptake of soil fauna in their habitat. This approach has been used primarily because of wide differences in the physiology and behaviors of such disparate organisms. However, improvement of models is badly needed, Particularly to describe uptake processes by plant and animals that impinge on bioavailability. Although models are required to describe all important factors that may affect chemical bioavailability to individual organisms over time (e.g., sorption/desorption to soil/sediment, volatilization, dissolution, aging, "bound residue" formation, biodegradation, etc.), these models should be simplified, when possible, to limit the number of parameters to the practical minimum. Although significant scientific progress has been made in understanding the complexities in specific methodologies dedicated to determining bioavailability, no method has yet emerged to characterized bioavailability across a wide range of chemicals, organisms, and soils/sediments. The primary aim in studying bioavailability is to define options for addressing bioremediation or environmental toxicity (risk assessment), and that is unlikely to change. Because of its importance in estimating research is needed to more comprehensively address the key environmental issue of "bioavailability of chemicals in soil/sediment."

Effects of combined amendments on crop yield and cadmium uptake in two cadmium contaminated soils under rice-wheat rotation.

PubMed

Guo, Fuyu; Ding, Changfeng; Zhou, Zhigao; Huang, Gaoxiang; Wang, Xingxiang

2018-02-01

Soil cadmium (Cd) contamination in China has become a serious concern due to its high toxicity to human health through food chains. A pot experiment was conducted to investigate the effects of hydrated lime (L), hydroxyapatite (H) and organic fertilizer (F) alone or in combination to remedy a mild (DY) and a moderate (YX) Cd contaminated agricultural soil under rice-wheat rotation. Results showed that crops grain yield and Cd concentration, soil pH, CaCl 2 extractable Cd and Cd speciation were markedly affected by the amendments. In both cropping seasons, hydrated lime and hydroxyapatite significantly immobilized soil Cd, and hydroxyapatite, organic fertilizer significantly increased grain yield. Hydrated lime mainly increased soil carbonates bound Cd fractions resulted from 16.7% to 36.2% and from 16.8% to 28.3%, and hydroxyapatite increased Fe/Mn oxides Cd fractions from 19.3% to 33.4% and from 31.4% to 42.1% in the DY and YX soils, respectively; while organic fertilizer slightly increased soil exchangeable and organic matter bound Cd fractions. Besides, combined amendments contain alkaline materials and organic materials have the potential to decrease grain Cd and increase grain yield simultaneously. Therefore, in view of the effects of amendments on grain yield and Cd concentration, the cost as well as the potential benefits expected, combined amendments like hydrated lime + organic fertilizer, hydrated lime + hydroxyapatite + organic fertilizer are recommended in practical application. Mechanisms of Cd immobilization affected by amendments are mainly attributed to the changes in soil Cd availability and crops root uptake rather than internal translocation in plants. Copyright © 2017 Elsevier Inc. All rights reserved.

Arsenic uptake by lettuce from As-contaminated soil remediated with Pteris vittata and organic amendment.

PubMed

de Oliveira, Letuzia M; Suchismita, Das; Gress, Julia; Rathinasabapathi, Bala; Chen, Yanshan; Ma, Lena Q

2017-06-01

Leaching of inorganic arsenic (As) from chromated copper arsenate (CCA)-treated wood may elevate soil As levels. Thus, an environmental concern arises regarding As accumulation in vegetables grown in these soils. In this study, a greenhouse experiment was conducted to investigate the ability of As-hyperaccumulator P. vittata and organic amendments in reducing As uptake by lettuce (Lactuca sativa) from a soil contaminated from CCA-treated wood (63.9 mg kg -1 As). P. vittata was grown for 150 d in a CCA-contaminated soil amended with biochar, activated carbon or coffee grounds at 1%, followed by lettuce for another 55 d. After harvest, plant biomass and As concentrations in plant and soil were determined. The presence of P. vittata reduced As content in lettuce by 21% from 27.3 to 21.5 mg kg -1 while amendment further reduced As in lettuce by 5.6-18%, with activated C being most effective. Our data showed that both P. vittata and organic amendments were effective in reducing As concentration in lettuce. Though no health-based standard for As in vegetables exists in USA, care should be taken when growing lettuce in contaminated soils. Our data showed that application of organic amendments with P. vittata reduced As hazards in CCA-contaminated soils. Published by Elsevier Ltd.

Application of Potential Phosphate-Solubilizing Bacteria and Organic Acids on Phosphate Solubilization from Phosphate Rock in Aerobic Rice

PubMed Central

Jusop, Shamshuddin; Naher, Umme Aminun; Othman, Radziah; Razi, Mohd Ismail

2013-01-01

A study was conducted at Universiti Putra Malaysia to determine the effect of phosphate-solubilizing bacteria (PSB) and organic acids (oxalic & malic) on phosphate (P) solubilization from phosphate rock (PR) and growth of aerobic rice. Four rates of each organic acid (0, 10, 20, and 30 mM), and PSB strain (Bacillus sp.) were applied to aerobic rice. Total bacterial populations, amount of P solubilization, P uptake, soil pH, and root morphology were determined. The results of the study showed significantly high P solubilization in PSB with organic acid treatments. Among the two organic acids, oxalic acid was found more effective compared to malic acid. Application of oxalic acid at 20 mM along with PSB16 significantly increased soluble soil P (28.39 mg kg−1), plant P uptake (0.78 P pot−1), and plant biomass (33.26 mg). Addition of organic acids with PSB and PR had no influence on soil pH during the planting period. A higher bacterial population was found in rhizosphere (8.78 log10 cfu g−1) compared to the nonrhizosphere and endosphere regions. The application of organic acids along with PSB enhanced soluble P in the soil solution, improved root growth, and increased plant biomass of aerobic rice seedlings without affecting soil pH. PMID:24288473

[Mechanisms for the increased fertilizer nitrogen use efficiency of rice in wheat-rice rotation system under combined application of inorganic and organic fertilizers].

PubMed

Liu, Yi-Ren; Li, Xiang; Yu, Jie; Shen, Qi-Rong; Xu, Yang-Chun

2012-01-01

A pot experiment was conducted to study the effects of combined application of organic and inorganic fertilizers on the nitrogen uptake by rice and the nitrogen supply by soil in a wheat-rice rotation system, and approach the mechanisms for the increased fertilizer nitrogen use efficiency of rice under the combined fertilization from the viewpoint of microbiology. Comparing with applying inorganic fertilizers, combined application of organic and inorganic fertilizers decreased the soil microbial biomass carbon and nitrogen and soil mineral nitrogen contents before tillering stage, but increased them significantly from heading to filling stage. Under the combined fertilization, the dynamics of soil nitrogen supply matched best the dynamics of rice nitrogen uptake and utilization, which promoted the nitrogen accumulation in rice plant and the increase of rice yield and biomass, and increased the fertilizer nitrogen use efficiency of rice significantly. Combined application of inorganic and organic fertilizers also promoted the propagation of soil microbes, and consequently, more mineral nitrogen in soil was immobilized by the microbes at rice early growth stage, and the immobilized nitrogen was gradually released at the mid and late growth stages of rice, being able to better satisfy the nitrogen demand of rice in its various growth and development stages.

Effects of soil water saturation on sampling equilibrium and kinetics of selected polycyclic aromatic hydrocarbons.

PubMed

Kim, Pil-Gon; Roh, Ji-Yeon; Hong, Yongseok; Kwon, Jung-Hwan

2017-10-01

Passive sampling can be applied for measuring the freely dissolved concentration of hydrophobic organic chemicals (HOCs) in soil pore water. When using passive samplers under field conditions, however, there are factors that might affect passive sampling equilibrium and kinetics, such as soil water saturation. To determine the effects of soil water saturation on passive sampling, the equilibrium and kinetics of passive sampling were evaluated by observing changes in the distribution coefficient between sampler and soil (K sampler/soil ) and the uptake rate constant (k u ) at various soil water saturations. Polydimethylsiloxane (PDMS) passive samplers were deployed into artificial soils spiked with seven selected polycyclic aromatic hydrocarbons (PAHs). In dry soil (0% water saturation), both K sampler/soil and k u values were much lower than those in wet soils likely due to the contribution of adsorption of PAHs onto soil mineral surfaces and the conformational changes in soil organic matter. For high molecular weight PAHs (chrysene, benzo[a]pyrene, and dibenzo[a,h]anthracene), both K sampler/soil and k u values increased with increasing soil water saturation, whereas they decreased with increasing soil water saturation for low molecular weight PAHs (phenanthrene, anthracene, fluoranthene, and pyrene). Changes in the sorption capacity of soil organic matter with soil water content would be the main cause of the changes in passive sampling equilibrium. Henry's law constant could explain the different behaviors in uptake kinetics of the selected PAHs. The results of this study would be helpful when passive samplers are deployed under various soil water saturations. Copyright © 2017 Elsevier Ltd. All rights reserved.

Earthworms and nutrient availability: the ecosystem engineer as (bio)chemical engineer

NASA Astrophysics Data System (ADS)

van Groenigen, Jan Willem; Ros, Mart; Vos, Hannah; De Deyn, Gerlinde; Hiemstra, Tjisse; Oenema, Oene; Koopmans, Gerwin

2017-04-01

The ability of earthworms to increase plant production has long been recognized. However, the pathways through which they do so, and the magnitude of this effect, have not been conclusively addressed. In two studies we address these issues for nitrogen (N) and phosphorus (P) availability to plants. In the first study, a meta-analysis, we concluded that earthworm presence increases crop yield on average with 26% and aboveground biomass with 24%. The positive effects of earthworms increase when more residue is returned to the soil, but disappear when soil N availability is high. This suggests that earthworms stimulate plant growth predominantly through N mineralization from soil organic matter or crop residue. In a second study, we tested the effect of earthworms on plant P uptake from inorganic sources. In a greenhouse experiment on a soil with low P availability we showed that presence of the anecic earthworm Lumbricus terrestris resulted in increased aboveground biomass (from 164 to 188 g dry matter m-2) and P uptake (from 0.21 to 0.27 g m-2). Concentrations of total dissolved P and dissolved inorganic P in water extractions of earthworm casts were 7-9 times higher than in those of bulk soil. Using advanced surface complexation modelling, we showed that these effects were primarily related to desorption of inorganic P due to competition with organic carbon for binding sites. We conclude that earthworms can alter nutrient cycling and increase N and P uptake by plants through a combination of biochemical and chemical pathways. Earthworms are most likely to stimulate N uptake in organic farming systems and tropical subsistence farming, which largely rely on nutrient mineralization. Additional benefits of earthworms might be expected in conventional farming systems with low levels of available P.

Drivers of Phosphorus Uptake by Barley Following Secondary Resource Application

PubMed Central

Brod, Eva; Øgaard, Anne Falk; Krogstad, Tore; Haraldsen, Trond Knapp; Frossard, Emmanuel; Oberson, Astrid

2016-01-01

Minable rock phosphate is a finite resource. Replacing mineral phosphorus (P) fertilizer with P-rich secondary resources is one way to manage P more efficiently, but the importance of physicochemical and microbial soil processes induced by secondary resources for plant P uptake is still poorly understood. Using radioactive-labeling techniques, the fertilization effects of dairy manure, fish sludge, meat bone meal, and wood ash were studied as P uptake by barley after 44 days and compared with those of water-soluble mineral P (MinP) and an unfertilized control (NoP) in a pot experiment with an agricultural soil containing little available P at two soil pH levels, approximately pH 5.3 (unlimed soil) and pH 6.2 (limed soil). In a parallel incubation experiment, the effects of the secondary resources on physicochemical and microbial soil processes were studied. The results showed that the relative agronomic efficiency compared with MinP decreased in the order: manure ≥fish sludge ≥wood ash ≥meat bone meal. The solubility of inorganic P in secondary resources was the main driver for P uptake by barley (Hordeum vulgare). The effects of secondary resources on physicochemical and microbial soil processes were of little overall importance. Application of organic carbon with manure resulted in microbial P immobilization and decreased uptake by barley of P derived from the soil. On both soils, P uptake by barley was best explained by a positive linear relationship with the H2O + NaHCO3-soluble inorganic P fraction in fertilizers or by a linear negative relationship with the HCl-soluble inorganic P fraction in fertilizers. PMID:27243015

Enhanced Phytoremediation of Crude Oil-Polluted Soil by Four Plant Species: Effect of Inorganic and Organic Bioaugumentation.

PubMed

Nwaichi, Eucharia Oluchi; Frac, Magdalena; Nwoha, Paul Aleruchi; Eragbor, Progress

2015-01-01

A field experiment investigating the removal and/or uptake of Polycyclic Aromatic Hydrocarbons (PAHs) and specific metals (As, Cd, Cr) from a crude oil polluted agricultural soil was performed during the 2013 wet season using four plant species: Fimbristylis littoralis, Hevea brasilensis (Rubber plants), Cymbopogom citratus (Lemon grass), and Vigna subterranea (Bambara nuts). Soil functional diversity and soil-enzyme interactions were also investigated. The diagnostic ratios and the correlation analysis identified mixed petrogenic and pyrogenic sources as the main contributors of PAHs at the study site. A total of 16 PAHs were identified, 6 of which were carcinogenic. Up to 42.4 mg kg(-1) total PAHs was recorded prior to the experiments. At 90 d, up to 92% total PAH reduction and 96% As removal were achieved using F. littoralis, the best performing species. The organic soil amendment (poultry dung) rendered most of the studied contaminants unavailable for uptake. However, the organic amendment accounted for over 70% of the increased dehydrogenase, phosphatase, and proteolytic enzymes activities in the study. Overall, the combined use of soil amendments and phytoremediation significantly improved the microbial community activity, thus promoting the restoration of the ecosystem.

Bioaccumulation of total mercury in the earthworm Eisenia andrei.

PubMed

Le Roux, Shirley; Baker, Priscilla; Crouch, Andrew

2016-01-01

Earthworms are a major part of the total biomass of soil fauna and play a vital role in soil maintenance. They process large amounts of plant and soil material and can accumulate many pollutants that may be present in the soil. Earthworms have been explored as bioaccumulators for many heavy metal species such as Pb, Cu and Zn but limited information is available for mercury uptake and bioaccumulation in earthworms and very few report on the factors that influence the kinetics of Hg uptake by earthworms. It is known however that the uptake of Hg is strongly influenced by the presence of organic matter, hence the influence of ligands are a major factor contributing to the kinetics of mercury uptake in biosystems. In this work we have focused on the uptake of mercury by earthworms (Eisenia andrei) in the presence of humic acid (HA) under varying physical conditions of pH and temperature, done to assess the role of humic acid in the bioaccumulation of mercury by earthworms from soils. The study was conducted over a 5-day uptake period and all earthworm samples were analysed by direct mercury analysis. Mercury distribution profiles as a function of time, bioaccumulation factors (BAFs), first order rate constants and body burden constants for mercury uptake under selected conditions of temperature, pH as well as via the dermal and gut route were evaluated in one comprehensive approach. The results showed that the uptake of Hg was influenced by pH, temperature and the presence of HA. Uptake of Hg(2+) was improved at low pH and temperature when the earthworms in soil were in contact with a saturating aqueous phase. The total amount of Hg(2+) uptake decreased from 75 to 48 % as a function of pH. For earthworms in dry soil, the uptake was strongly influenced by the presence of the ligand. Calculated BAF values ranged from 0.1 to 0.8. Mercury uptake typically followed first order kinetics with rate constants determined as 0.2 to 1 h(-1).

Evaluation of organic amendment on the effect of cadmium bioavailability in contaminated soils using the DGT technique and traditional methods.

PubMed

Yao, Yu; Sun, Qin; Wang, Chao; Wang, Pei-Fang; Ding, Shi-Ming

2017-03-01

Organic amendments have been widely proposed as a remediation technology for metal-contaminated soils, but there exist controversial results on their effectiveness. In this study, the effect of pig manure addition on cadmium (Cd) bioavailability in Cd-contaminated soils was systematically evaluated by one dynamic, in situ technique of diffusive gradients in thin films (DGT) and four traditional methods based on the equilibrium theory (soil solution concentration and the three commonly used extractants, i.e., acetic acid (HAc), ethylenediamine tetraacetic acid (EDTA), and calcium chloride (CaCl 2 ). Wheat and maize were selected for measurement of plant Cd uptake. The results showed that pig manure addition could promote the growth of two plants, accompanied by increasing biomasses of shoots and roots with increasing doses of pig manure addition. Correspondingly, increasing additions of pig manure reduced plant Cd uptake and accumulation, as indicated by the decreases of Cd concentrations in shoots and roots. The bioavailable concentrations of Cd in Cd-contaminated soils reflected by the DGT technique obviously decreased with increasing doses of pig manure addition, following the same changing trend as plant Cd uptake. Changes in soil solution Cd concentration and extractable Cd by HAc, EDTA, and CaCl 2 in soils were similar to DGT measurement. Meanwhile, the capability of Cd resupply from solid phase to soil solution decreased with increasing additions of pig manure, as reflected by the decreases in the ratio (R) value of C DGT to C sol . Positive correlations were observed between various bioavailable indicators of Cd in soils and Cd concentrations in the tissues of the two plants. These findings provide stronger evidence that pig manure amendment is effective in reducing Cd mobility and bioavailability in soils and it is an ideal organic material for remediation of Cd-contaminated soils.

Seasonal switchgrass ecotype contributions to soil organic carbon, deep soil microbial community composition and rhizodeposit uptake during an extreme drought

USDA-ARS?s Scientific Manuscript database

The importance of rhizodeposit C and associated microbial communities in deep soil C stabilization is relatively unknown. Phenotypic variability in plant root biomass could impact C cycling through belowground plant allocation, rooting architecture, and microbial community abundance and composition...

Seasonal switchgrass ecotype contributions to soil organic carbon, deep soil microbial community composition and rhizodeposit uptake during an extreme drought

USDA-ARS?s Scientific Manuscript database

More than 50% of the world’s soil C stocks reside below 30 cm, but relatively little is known about the importance of rhizodeposit C and associated microbial communities in deep soil processes. Phenotypic variability in plant root biomass could impact C cycling through belowground plant allocation,...

Competition for nitrogen between Fagus sylvatica and Acer pseudoplatanus seedlings depends on soil nitrogen availability

PubMed Central

Li, Xiuyuan; Rennenberg, Heinz; Simon, Judy

2015-01-01

Competition for nitrogen (N), particularly in resource-limited habitats, might be avoided by different N acquisition strategies of plants. In our study, we investigated whether slow-growing European beech and fast-growing sycamore maple seedlings avoid competition for growth-limiting N by different N uptake patterns and the potential alteration by soil N availability in a microcosm experiment. We quantified growth and biomass indices, 15N uptake capacity and N pools in the fine roots. Overall, growth indices, N acquisition and N pools in the fine roots were influenced by species-specific competition depending on soil N availability. With inter-specific competition, growth of sycamore maple reduced regardless of soil N supply, whereas beech only showed reduced growth when N was limited. Both species responded to inter-specific competition by alteration of N pools in the fine roots; however, sycamore maple showed a stronger response compared to beech for almost all N pools in roots, except for structural N at low soil N availability. Beech generally preferred organic N acquisition while sycamore maple took up more inorganic N. Furthermore, with inter-specific competition, beech had an enhanced organic N uptake capacity, while in sycamore maple inorganic N uptake capacity was impaired by the presence of beech. Although sycamore maple could tolerate the suboptimal conditions at the cost of reduced growth, our study indicates its reduced competitive ability for N compared to beech. PMID:25983738

Acid phosphatase role in chickpea/maize intercropping.

PubMed

Li, S M; Li, L; Zhang, F S; Tang, C

2004-08-01

Organic P comprises 30-80 % of the total P in most agricultural soils. It has been proven that chickpea facilitates P uptake from an organic P source by intercropped wheat. In this study, acid phosphatase excreted from chickpea roots is quantified and the contribution of acid phosphatase to the facilitation of P uptake by intercropped maize receiving phytate is examined. For the first experiment using hydroponics, maize (Zea mays 'Zhongdan No. 2') and chickpea (Cicer arietinum 'Sona') were grown in either the same or separate containers, and P was supplied as phytate, KH2PO4 at 0.25 mmol P L(-1), or not at all. The second experiment involved soil culture with three types of root separation between the two species: (1) plastic sheet, (2) nylon mesh, and (3) no barrier. Maize plants were grown in one compartment and chickpea in the other. Phosphorus was supplied as phytate, Ca(H2PO4)2 at 50 mg P kg(-1), or no P added. In the hydroponics study, the total P uptake by intercropped maize supplied with phytate was 2.1-fold greater than when it was grown as a monoculture. In the soil experiment, when supplied with phytate, total P uptake by maize with mesh barrier and without root barrier was 2.2 and 1.5 times, respectively, as much as that with solid barrier. In both experiments, roots of both maize and chickpea supplied with phytate and no P secreted more acid phosphatase than those with KH2PO4 or Ca(H2PO4)2. However, average acid phosphatase activity of chickpea roots supplied with phytate was 2-3-fold as much as maize. Soil acid phosphatase activity in the rhizosphere of chickpea was also significantly higher than maize regardless of P sources. Chickpea can mobilize organic P in both hydroponic and soil cultures, leading to an interspecific facilitation in utilization of organic P in maize/chickpea intercropping.

Sorption of vapors of some organic liquids on soil humic acid and its relation to partitioning of organic compounds in soil organic matter

USGS Publications Warehouse

Chlou, G.T.; Kile, D.E.; Malcolm, R.L.

1988-01-01

Vapor sorption of water, ethanol, benzene, hexane, carbon tetrachloride, 1,1,1-trichloroethane, trichloroethylene, tetrachloroethylene, and 1,2-dibromoethane on (Sanhedron) soil humic acid has been determined at room temperature. Isotherms for all organic liquids are highly linear over a wide range of relative pressure (P/P??), characteristic of the partitioning (dissolution) of the organic compounds in soil humic acid. Polar liquids exhibit markedly greater sorption capacities on soil humic acid than relatively nonpolar liquids, in keeping with the polar nature of the soil humic acid as a partition medium. The limiting sorption (partition) capacities of relatively non-polar liquids are remarkably similar when expressed in terms of volumes per unit weight of soil humic acid. The soil humic acid is found to be about half as effective as soil organic matter in sorption of relatively nonpolar organic compounds. The nearly constant limiting sorption capacity for nonpolar organic liquids with soil humic acid on a volume-to-weight basis and its efficiency in sorption relative to soil organic matter provide a basis for predicting the approximate sorption (partition) coefficients of similar compounds in uptake by soil in aqueous systems.

Cadmium Sorption Characteristics of Soil Amendments and its Relationship with the Cadmium Uptake by Hyperaccumulator and Normal Plants in Amended Soils

PubMed Central

Sun, Yan; Wu, Qi-Tang; Lee, Charles C.C.; Li, Baoqin; Long, Xinxian

2013-01-01

In order to select appropriate amendments for cropping hyperaccumulator or normal plants on contaminated soils and establish the relationship between Cd sorption characteristics of soil amendments and their capacity to reduce Cd uptake by plants, batch sorption experiments with 11 different clay minerals and organic materials and a pot experiment with the same amendments were carried out. The pot experiment was conducted with Sedum alfredii and maize (Zea mays) in a co-cropping system. The results showed that the highest sorption amount was by montmorillonite at 40.82 mg/g, while mica was the lowest at only 1.83 mg/g. There was a significant negative correlation between the n value of Freundlich equation and Cd uptake by plants, and between the logarithm of the stability constant K of the Langmuir equation and plant uptake. Humic acids (HAs) and mushroom manure increased Cd uptake by S. alfredii, but not maize, thus they are suitable as soil amendments for the co-cropping S. alfredii and maize. The stability constant K in these cases was 0.14–0.16 L/mg and n values were 1.51–2.19. The alkaline zeolite and mica had the best fixation abilities and significantly decreased Cd uptake by the both plants, with K ≥ 1.49 L/mg and n ≥ 3.59. PMID:24912231

Assessing biochar applications and repeated Brassica juncea L. production cycles to remediate Cu contaminated soil.

PubMed

Gonzaga, Maria Isidoria Silva; Mackowiak, Cheryl; Quintão de Almeida, André; Wisniewski, Alberto; Figueiredo de Souza, Danyelle; da Silva Lima, Idamar; Nascimento de Jesus, Amanda

2018-06-01

Copper contamination and toxicity in soils is a worldwide problem, especially in areas where copper-based fungicides are applied. Indian mustard (Brassica juncea L.) plants are used in phytoremediation and are also edible crops commonly cultivated in organic agricultural areas. Application of biochar to Cu contaminated soils may reduce Cu availability and uptake, thereby allowing for greater Indian mustard production. A (3 × 2) + 1) experiment in a randomized complete block design was used to evaluate the effect of three different biochars (coconut shell, orange bagasse and sewage sludge) and two application rates (30 and 60 t ha -1 ) on Cu uptake by Indian mustard during three successive growth cycles and Cu immobilization in soil, under greenhouse conditions. Coconut husk biochar did not influence available soil Cu; however, its presence increased shoot Cu uptake by 117% and 38% in the two last growth cycles. Orange bagasse biochar, at the 60 t ha -1 application rate, reduced Cu availability, but it was not effective in reducing Cu uptake. Sewage sludge biochar did not affect Cu availability and caused an approximated 100% increase in shoot Cu uptake at the highest application rate. Therefore, the orange bagasse biochar is the most effective whereas the sewage sludge biochar is the least in Cu immobilization. None of the biochars was shown to be suitable as soil amendment to reduce the uptake of Cu by Indian mustard. However, coconut shell and sewage sludge biochar can be effectively applied to soil as an auxiliary tool to remediate Cu-contaminated soils. Copyright © 2018. Published by Elsevier Ltd.

Natural colloidal P and its contribution to plant P uptake.

PubMed

Montalvo, Daniela; Degryse, Fien; McLaughlin, Mike J

2015-03-17

Phosphorus (P) bioavailability depends on its concentration and speciation in solution. Andisols and Oxisols have very low soil solution concentration of free orthophosphate, as they contain high concentrations of strongly P-sorbing minerals (Al/Fe oxyhydroxides, allophanes). Free orthophosphate is the form of P taken up by plants, but it is not the only P species present in the soil solution. Natural colloidal P (P associated with Al, Fe, and organic matter of sizes ranging from 1 to 1000 nm) constitutes an important fraction of soil solution P in these soils; however, its availability has not been considered. We measured the uptake of P by wheat (Triticum aestivum) from radiolabeled nonfiltered (colloid-containing) and 3-kDa filtered (nearly colloid-free) soil-water extracts from Andisols and Oxisols. In the Andisol extracts, P uptake was up to 5-fold higher from the nonfiltered solutions than the corresponding 3-kDa filtered solutions. In the Oxisol extract, no difference in P uptake between both solutions was observed. Also the diffusional flux of P as measured with the DGT technique was larger in the nonfiltered than in the 3-kDa filtered solutions. Our results suggest that colloidal P from Andisols is not chemically inert and contributes to plant uptake of P.

Climate-related changes of soil characteristics affect bacterial community composition and function of high altitude and latitude lakes.

PubMed

Rofner, Carina; Peter, Hannes; Catalán, Núria; Drewes, Fabian; Sommaruga, Ruben; Pérez, María Teresa

2017-06-01

Lakes at high altitude and latitude are typically unproductive ecosystems where external factors outweigh the relative importance of in-lake processes, making them ideal sentinels of climate change. Climate change is inducing upward vegetation shifts at high altitude and latitude regions that translate into changes in the pools of soil organic matter. Upon mobilization, this allochthonous organic matter may rapidly alter the composition and function of lake bacterial communities. Here, we experimentally simulate this potential climate-change effect by exposing bacterioplankton of two lakes located above the treeline, one in the Alps and one in the subarctic region, to soil organic matter from below and above the treeline. Changes in bacterial community composition, diversity and function were followed for 72 h. In the subarctic lake, soil organic matter from below the treeline reduced bulk and taxon-specific phosphorus uptake, indicating that bacterial phosphorus limitation was alleviated compared to organic matter from above the treeline. These effects were less pronounced in the alpine lake, suggesting that soil properties (phosphorus and dissolved organic carbon availability) and water temperature further shaped the magnitude of response. The rapid bacterial succession observed in both lakes indicates that certain taxa directly benefited from soil sources. Accordingly, the substrate uptake profiles of initially rare bacteria (copiotrophs) indicated that they are one of the main actors cycling soil-derived carbon and phosphorus. Our work suggests that climate-induced changes in soil characteristics affect bacterioplankton community structure and function, and in turn, the cycling of carbon and phosphorus in high altitude and latitude aquatic ecosystems. © 2016 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

Organic and inorganic amendments affect soil concentration and accumulation of cadmium and lead in wheat in calcareous alkaline soils

USDA-ARS?s Scientific Manuscript database

Irrigation with untreated effluent in periurban agriculture could result in accumulation and bioconcentrations of cadmium (Cd) and lead (Pb). Different amendments were used to investigate their effect on availability, concentration, and uptake of metals by wheat in texturally different soils. Crop w...

STUDYING FOREST ROOT SYSTEMS - AN OVERVIEW OF METHODOLOGICAL PROBLEMS

EPA Science Inventory

The study of tree root systems is central to understanding forest ecosystem carbon and nutrient cycles, nutrient and water uptake, C allocation patterns by trees, soil microbial populations, adaptation of trees to stress, soil organic matter production, etc. Methodological probl...

Amino acid production exceeds plant nitrogen demand in Siberian tundra

NASA Astrophysics Data System (ADS)

Wild, Birgit; Eloy Alves, Ricardo J.; Bárta, Jiři; Čapek, Petr; Gentsch, Norman; Guggenberger, Georg; Hugelius, Gustaf; Knoltsch, Anna; Kuhry, Peter; Lashchinskiy, Nikolay; Mikutta, Robert; Palmtag, Juri; Prommer, Judith; Schnecker, Jörg; Shibistova, Olga; Takriti, Mounir; Urich, Tim; Richter, Andreas

2018-03-01

Arctic plant productivity is often limited by low soil N availability. This has been attributed to slow breakdown of N-containing polymers in litter and soil organic matter (SOM) into smaller, available units, and to shallow plant rooting constrained by permafrost and high soil moisture. Using 15N pool dilution assays, we here quantified gross amino acid and ammonium production rates in 97 active layer samples from four sites across the Siberian Arctic. We found that amino acid production in organic layers alone exceeded literature-based estimates of maximum plant N uptake 17-fold and therefore reject the hypothesis that arctic plant N limitation results from slow SOM breakdown. High microbial N use efficiency in organic layers rather suggests strong competition of microorganisms and plants in the dominant rooting zone. Deeper horizons showed lower amino acid production rates per volume, but also lower microbial N use efficiency. Permafrost thaw together with soil drainage might facilitate deeper plant rooting and uptake of previously inaccessible subsoil N, and thereby promote plant productivity in arctic ecosystems. We conclude that changes in microbial decomposer activity, microbial N utilization and plant root density with soil depth interactively control N availability for plants in the Arctic.

The organic contamination level based on the total soil mass is not a proper index of the soil contamination intensity

USGS Publications Warehouse

Hung, H.-W.; Daniel, Sheng G.; Lin, T.-F.; Su, Y.; Chiou, C.T.

2009-01-01

Concentrations of organic contaminants in common productive soils based on the total soil mass give a misleading account of actual contamination effects. This is attributed to the fact that productive soils are essentially water-saturated, with the result that the soil uptake of organic compounds occurs principally by partition into the soil organic matter (SOM). This report illustrates that the soil contamination intensity of a compound is governed by the concentration in the SOM (Com) rather than by the concentration in whole soil (Cs). Supporting data consist of the measured levels and toxicities of many pesticides in soils of widely differing SOM contents and the related levels in in-situ crops that defy explanation by the Cs values. This SOM-based index is timely needed for evaluating the contamination effects of food crops grown in different soils and for establishing a dependable priority ranking for intended remediation of numerous contamination sites.

Organic N cycling in Arctic ecosystems: Quantifying root uptake kinetics and temporal variability of soil amino acids.

NASA Astrophysics Data System (ADS)

Homyak, P. M.; Iverson, S. L.; Slessarev, E.; Marchus, K.; Schimel, J.

2017-12-01

Arctic ecosystems are undergoing shifts in plant community composition with increased warming. How these changes may alter ecosystem function is not well constrained, owing in part to uncertainties on how plant-soil feedbacks influence nutrient cycling. For nitrogen (N), in particular, understanding how these feedbacks may alter cycling rates is challenging because i) Arctic plants take up organic N (i.e., amino acids; AA) when inorganic N is limiting, yet ii) it has never been quantified, for any plant species growing in the wild, how much of its N demand is actually met by taking up AA. To advance fundamental understanding of plant-soil feedbacks as the Arctic warms, we are integrating field measurements of AA availability in N-limited tussock tundra (E. vaginatum) and a comparably less N-limited birch shrub tundra (Betula nana and Salix spp.) with a root uptake model. We used soil microdialysis to determine available AA concentrations in the soil solution and potential rates of AA diffusion and mass flow to roots at the Toolik Field Station in Alaska. These measurements are being combined with AA root uptake kinetic experiments using E. vaginatum to establish actual AA root uptake rates. We found that in the early growing season (June), total AA concentrations in the soil solution averaged 104 µg N L-1 and were similar to NH4+ across sites. In the late growing season (August), AA were the dominant form of N averaging 75 µg N L-1 while NH4+ decreased to 13 µg N L-1. In the early growing season AA diffusion rates in the soil averaged 200 ng N cm-2 s-1 and declined to 150 ng N cm-2 s-1 in the late growing season. Lysine, serine, and arginine were the most abundant AA and differences in the N status of sites did not affect total AA concentrations. Amino acids made up at least half of the N diffusing through the soil solution, suggesting they can subsidize the N demand of arctic plants. Ongoing field experiments at Toolik will be used to constrain actual AA root uptake rates.

Biological Oxygen Demand in Soils and Litters

NASA Astrophysics Data System (ADS)

Smagin, A. V.; Smagina, M. V.; Sadovnikova, N. B.

2018-03-01

Biological oxygen demand (BOD) in mineral and organic horizons of soddy-podzolic soils in the forest-park belt of Moscow as an indicator of their microbial respiration and potential biodestruction function has been studied. The BOD of soil samples has been estimated with a portable electrochemical analyzer after incubation in closed flasks under optimum hydrothermal conditions. A universal gradation scale of this parameter from very low (<2 g O2/(m3 h)) to extremely high (>140 g O2/(m3 h)) has been proposed for mineral and organic horizons of soil. A physically substantiated model has been developed for the vertical distribution of BOD in the soil, which combines the diffusion transport of oxygen from the atmosphere and its biogenic uptake in the soil by the first-order reaction. An analytical solution of the model in the stationary state has been obtained; from it, the soil oxygen diffusivity and the kinetic constants of O2 uptake have been estimated, and the profile-integrated total BOD value has been calculated (0.4-1.8 g O2/(m2 h)), which is theoretically identical to the potential oxygen flux from the soil surface due to soil respiration. All model parameters reflect the recreation load on the soil cover by the decrease in their values against the control.

Improving Lowland Rice (O. sativa L. cv. MR219) Plant Growth Variables, Nutrients Uptake, and Nutrients Recovery Using Crude Humic Substances.

PubMed

Palanivell, Perumal; Ahmed, Osumanu Haruna; Ab Majid, Nik Muhamad; Jalloh, Mohamadu Boyie; Susilawati, Kasim

2015-01-01

High cation exchange capacity and organic matter content of crude humic substances from compost could be exploited to reduce ammonia loss from urea and to as well improve rice growth and soil chemical properties for efficient nutrients utilization in lowland rice cultivation. Close-dynamic air flow system was used to determine the effects of crude humic substances on ammonia volatilization. A pot experiment was conducted to determine the effects of crude humic substances on rice plant growth, nutrients uptake, nutrients recovery, and soil chemical properties using an acid soil mixed with three rates of crude humic substances (20, 40, and 60 g pot(-1)). Standard procedures were used to evaluate rice plant dry matter production, nutrients uptake, nutrients recovery, and soil chemical properties. Application of crude humic substances increased ammonia volatilization. However, the lowest rate of crude humic substances (20 g pot(-1)) significantly improved total dry matter, nutrients uptake, nutrients recovery, and soil nutrients availability compared with crude humic substances (40 and 60 g pot(-1)) and the normal fertilization. Apart from improving growth of rice plants, crude humic substances can be used to ameliorate acid soils in rice cultivation. The findings of this study are being validated in our ongoing field trials.

Improving Lowland Rice (O. sativa L. cv. MR219) Plant Growth Variables, Nutrients Uptake, and Nutrients Recovery Using Crude Humic Substances

PubMed Central

Palanivell, Perumal; Ahmed, Osumanu Haruna; Ab Majid, Nik Muhamad; Jalloh, Mohamadu Boyie; Susilawati, Kasim

2015-01-01

High cation exchange capacity and organic matter content of crude humic substances from compost could be exploited to reduce ammonia loss from urea and to as well improve rice growth and soil chemical properties for efficient nutrients utilization in lowland rice cultivation. Close-dynamic air flow system was used to determine the effects of crude humic substances on ammonia volatilization. A pot experiment was conducted to determine the effects of crude humic substances on rice plant growth, nutrients uptake, nutrients recovery, and soil chemical properties using an acid soil mixed with three rates of crude humic substances (20, 40, and 60 g pot−1). Standard procedures were used to evaluate rice plant dry matter production, nutrients uptake, nutrients recovery, and soil chemical properties. Application of crude humic substances increased ammonia volatilization. However, the lowest rate of crude humic substances (20 g pot−1) significantly improved total dry matter, nutrients uptake, nutrients recovery, and soil nutrients availability compared with crude humic substances (40 and 60 g pot−1) and the normal fertilization. Apart from improving growth of rice plants, crude humic substances can be used to ameliorate acid soils in rice cultivation. The findings of this study are being validated in our ongoing field trials. PMID:25977938

Role of Streptomyces pactum in phytoremediation of trace elements by Brassica juncea in mine polluted soils.

PubMed

Ali, Amjad; Guo, Di; Mahar, Amanullah; Wang, Zhen; Muhammad, Dost; Li, Ronghua; Wang, Ping; Shen, Feng; Xue, Quanhong; Zhang, Zengqiang

2017-10-01

The industrial expansion, smelting, mining and agricultural practices have increased the release of toxic trace elements (TEs) in the environment and threaten living organisms. The microbe-assisted phytoremediation is environmentally safe and provide an effective approach to remediate TEs contaminated soils. A pot experiment was conducted to test the potential of an Actinomycete, subspecies Streptomyces pactum (Act12) along with medical stone compost (MSC) by growing Brassica juncea in smelter and mines polluted soils of Feng County (FC) and Tongguan (TG, China), respectively. Results showed that Zn (7, 28%), Pb (54, 21%), Cd (16, 17%) and Cu (8, 10%) uptake in shoot and root of Brassica juncea was pronounced in FC soil. Meanwhile, the Zn (40, 14%) and Pb (82, 15%) uptake in the shoot and root were also increased in TG soil. Shoot Cd uptake remained below detection, while Cu decreased by 52% in TG soil. The Cd and Cu root uptake were increased by 17% and 33%, respectively. Results showed that TEs uptake in shoot increased with increasing Act12 dose. Shoot/root dry biomass, chlorophyll and carotenoid content in Brassica juncea were significantly influenced by the application of Act12 in FC and TG soil. The antioxidant enzymatic activities (POD, PAL, PPO and CAT) in Brassica juncea implicated enhancement in the plant defense mechanism against the TEs induced stress in contaminated soils. The extraction potential of Brasssica was further evaluated by TF (translocation factor) and MEA (metal extraction amount). Based on our findings, further investigation of Act12 assisted phytoremediation of TEs in the smelter and mines polluted soil and hyperaccumulator species are suggested for future studies. Copyright © 2017. Published by Elsevier Inc.

Growing up green on serpentine soils: Biogeochemistry of serpentine vegetation in the Central Coast Range of California

USGS Publications Warehouse

Oze, C.; Skinner, C.; Schroth, A.W.; Coleman, R.G.

2008-01-01

Serpentine soils derived from the weathering of ultramafic rocks and their metamorphic derivatives (serpentinites) are chemically prohibitive for vegetative growth. Evaluating how serpentine vegetation is able to persist under these chemical conditions is difficult to ascertain due to the numerous factors (climate, relief, time, water availability, etc.) controlling and affecting plant growth. Here, the uptake, incorporation, and distribution of a wide variety of elements into the biomass of serpentine vegetation has been investigated relative to vegetation growing on an adjacent chert-derived soil. Soil pH, electrical conductivity, organic C, total N, soil extractable elements, total soil elemental compositions and plant digestions in conjunction with spider diagrams are utilized to determine the chemical relationships of these soil and plant systems. Plant available Mg and Ca in serpentine soils exceed values assessed in chert soils. Magnesium is nearly 3 times more abundant than Ca in the serpentine soils; however, the serpentine soils are not Ca deficient with Ca concentrations as high as 2235 mg kg-1. Calcium to Mg ratios (Ca:Mg) in both serpentine and chert vegetation are greater than one in both below and above ground tissues. Soil and plant chemistry analyses support that Ca is not a limiting factor for plant growth and that serpentine vegetation is actively moderating Mg uptake as well as tolerating elevated concentrations of bioavailable Mg. Additionally, results demonstrate that serpentine vegetation suppresses the uptake of Fe, Cr, Ni, Mn and Co into its biomass. The suppressed uptake of these metals mainly occurs in the plants' roots as evident by the comparatively lower metal concentrations present in above ground tissues (twigs, leaves and shoots). This research supports earlier studies that have suggested that ion uptake discrimination and ion suppression in the roots are major mechanisms for serpentine vegetation to tolerate the chemistry of serpentine soils. ?? 2008 Elsevier Ltd.

Sustainable measures for sewage sludge treatment - evaluating the effects on P reaction in soils and plant P uptake

NASA Astrophysics Data System (ADS)

Shenker, Moshe; Einhoren, Hana

2016-04-01

Wastewater treatment, whether for water reusing or for releasing into the environment, results in sewage sludge rich in organic matter and nutrients. If free of pathogens and pollutants, this waste material is a widely used as soil amendment and source of valuable nutrients for agronomic use. Nevertheless, its P/N ratio largely exceeds plant P/N demand. Limiting its application rates according to the P demand of crops will largely limit its application rates and its beneficial effect as a soil amendment and as a source for other nutrients. An alternative approach, in which P is stabilized before application, was evaluated in this study. Anaerobically digested fresh sewage sludge (FSS) was stabilized by aluminum sulfate, ferrous sulfate, and calcium oxide (CaO), as well as by composting with shredded woody yard-waste to produce Al-FSS, Fe-FSS, CaO-FSS, and FSS-compost, respectively. Defined organic-P sources (glucose-1-phosphate and inositol-hexa-phosphate) and a P fertilizer (KH2PO4) were included as well and a control with no P amendments was included as a reference. Each material was applied at a fixed P load of 50 mg kg-1 to each of three soils and P speciation and plants P uptake were tested along 112 days of incubation at moderate (near field capacity) water content. Tomato seedlings were used for the P uptake test. The large set of data was used to evaluate the effect of each treatment on P reactions and mechanisms of retention in the tested soils and to correlate various P indices to P availability for plants. Plant P uptake was highly correlated to Olsen-P as well as to water-soluble inorganic-P, but not to water-soluble organic-P and not to total P or other experimentally-defined stable P fractions. We conclude that the P stabilization in the sludge will allow beneficial and sustainable use of sewage sludge as a soil amendment and source of nutrients, but the stabilization method should be selected in accordance with the target soil properties.

Uptake and Bioaccumulation of Pentachlorophenol by Emergent Wetland Plant Phragmites australis (Common Reed) in Cadmium Co-contaminated Soil.

PubMed

Hechmi, Nejla; Ben Aissa, Nadhira; Abdenaceur, Hassen; Jedidi, Naceur

2015-01-01

Despite many studies on phytoremediation of soils contaminated with either heavy metals or organics, little information is available on the effectiveness of phytoremediation of co-occurring metal and organic pollutants especially by using wetland species. Phragmites australis is a common wetland plant and its potential for phytoremediation of cadmium pentachlorophenol (Cd-PCP) co-contaminated soil was investigated. A greenhouse study was executed to elucidate the effects of Cd (0, 10, and 20 mg kg(-1)) without or with PCP (0, 50, and 250 mg kg(-1)) on the growth of the wetland plant P. australis and its uptake, accumulation and removal of pollutant from soils. After 75 days, plant biomass was significantly influenced by interaction of Cd and PCP and the effect of Cd on plant growth being stronger than that of PCP. Coexistence of PCP at low level lessened Cd toxicity to plants, resulting in improved plant growth and increased Cd accumulation in plant tissues. The dissipation of PCP in soils was significantly influenced by interactions of Cd, PCP and plant presence or absence. As an evaluation of soil biological activities after remediation soil enzyme was measured.

Soil-plant transfer of Cs-137 and Sr-90 in digestate amended agricultural soils- a lysimeter scale experiment

NASA Astrophysics Data System (ADS)

Mehmood, Khalid; Berns, Anne E.; Pütz, Thomas; Burauel, Peter; Vereecken, Harry; Zoriy, Myroslav; Flucht, Reinhold; Opitz, Thorsten; Hofmann, Diana

2014-05-01

Radiocesium and radiostrontium are among the most problematic soil contaminants following nuclear fallout due to their long half-lives and high fission yields. Their chemical resemblance to potassium, ammonium and calcium facilitates their plant uptake and thus enhances their chance to reach humans through the food-chain dramatically. The plant uptake of both radionuclides is affected by the type of soil, the amount of organic matter and the concentration of competitive ions. In the present lysimeter scale experiment, soil-plant transfer of Cs-137 and Sr-90 was investigated in an agricultural silty soil amended with digestate, a residue from a biogas plant. The liquid fraction of the digestate, liquor, was used to have higher nutrient competition. Digestate application was done in accordance with the field practice with an application rate of 34 Mg/ha and mixing it in top 5 cm soil, yielding a final concentration of 38 g digestate/Kg soil. The top 5 cm soil of the non-amended reference soil was also submitted to the same mixing procedure to account for the physical disturbance of the top soil layer. Six months after the amendment of the soil, the soil contamination was done with water-soluble chloride salts of both radionuclides, resulting in a contamination density of 66 MBq/m2 for Cs-137 and 18 MBq/m2 for Sr-90 in separate experiments. Our results show that digestate application led to a detectable difference in soil-plant transfer of the investigated radionuclides, effect was more pronounced for Cs-137. A clear difference was observed in plant uptake of different plants. Pest plants displayed higher uptake of both radionuclides compared to wheat. Furthermore, lower activity values were recorded in ears compared to stems for both radionuclides.

Weed management practice and cropping sequence impact on soil residual nitrogen

USDA-ARS?s Scientific Manuscript database

Inefficient N uptake by crops from N fertilization and/or N mineralized from crop residue and soil organic matter results in the accumulation of soil residual N (NH4-N and NO3-N) which increases the potential for N leaching. The objective of this study was to evaluate the effects of weed management ...

Benzo[a]pyrene bioavailability from pristine soil and contaminated sediment assessed using two in vitro models.

PubMed

Vasiluk, Luba; Pinto, Linda J; Walji, Zahra A; Tsang, Wing Shan; Gobas, Frank A P C; Eickhoff, Curtis; Moore, Margo M

2007-03-01

A major route of exposure to hydrophobic organic contaminants (HOCs), such as benzo[a]pyrene (BaP), is ingestion. Matrix-bound HOCs may become bioavailable after mobilization by the gastrointestinal fluids followed by sorption to the intestinal epithelium. The purpose of this research was to measure the bioavailability of [14C]-BaP bound to pristine soils or field-contaminated sediment using an in vitro model of gastrointestinal digestion followed by sorption to human enterocytes (Caco-2 cells) or to a surrogate membrane, ethylene vinyl acetate (EVA) thin film. Although Caco-2 cells had a twofold higher lipid-normalized fugacity capacity than EVA, [14C]-BaP uptake by Caco-2 lipids and EVA thin film demonstrated a linear relationship within the range of BaP concentrations tested. These results suggest that EVA thin film is a good membrane surrogate for passive uptake of BaP. The in vitro system provided enough sensitivity to detect matrix effects on bioavailability; after 5 h, significantly lower concentrations of [14C]-BaP were sorbed into Caco-2 cells from soil containing a higher percentage of organic matter compared to soil with a lower percentage of organic matter. The [14C]-BaP desorption rate from Caco-2 lipids consistently was twofold higher than from EVA thin film for all matrices tested. The more rapid kinetics observed with Caco-2 cells probably were due to the greater surface area available for absorption/desorption in the cells. After 5 h, the uptake of BaP into Caco-2 lipid was similar in live and metabolically inert Caco-2 cells, suggesting that the primary route of BaP uptake is by passive diffusion. Moreover, the driving force for uptake is the fugacity gradient that exists between the gastrointestinal fluid and the membrane.

Soil nitrate accumulation dominates the nonlinear responses of soil CO2 and CH4 fluxes to multi-level nitrogen addition in a temperate needle-broadleaved mixed forest

NASA Astrophysics Data System (ADS)

Fang, Huajun

2017-04-01

The responses of soil-atmosphere carbon (C) exchange fluxes to increased atmospheric nitrogen (N) deposition are controversial, leading to great uncertainty in the evaluation on the C sink capacity of global forest ecosystems elicited by anthropogenic N inputs. To date, we hardly knew how much was the critical level of N input for the alteration of the soil C fluxes, and what factors controlled the changes in soil CO2 and CH4 fluxes under N enrichment. Nine levels of urea addition experiment (0, 10, 20, 40, 60, 80, 100, 120, 140 kg N ha-1 yr-1) was conducted in the needle-broadleaved mixed forest in Changbai Mountain, Northeast China. Soil CO2 and CH4 fluxes were monitored weekly using the static chamber and gas chromatograph technique. Environmental variables (soil temperature and moisture in the 0-10 cm depth) and dissolved N (NH4+-N, NO3-N, total dissolved N (TDN), and dissolved organic N (DON)) in the organic layer and the 0-10 cm mineral soil layer were simultaneously measured. High rates of N addition (≥ 60 kg N ha-1 yr-1) significantly increased soil NO3-N contents in the organic layer and the mineral layer by 120%-180% and 56.4%-84.6%, respectively. However, N application did not lead to a significant accumulation of soil NH4+-N contents in the two soil layers except for a few treatments. N addition at a low rate of 10 kg N ha-1 yr-1 significantly promoted soil CO2 emission and CH4 uptake, whereas high rate of N addition (140 kg N ha-1 yr-1) significantly inhibited them. Significant negative relationships were observed between changes in soil CO2 emission and CH4 uptake and changes in soil NO3-N and moisture contents under N enrichment. These results suggest that soil nitrification and NO3-N accumulation could be important regulators of soil CO2 emission and CH4 uptake in the temperate needle-broadleaved mixed forest. The nonlinear responses to exogenous N inputs and the critical levels for the alteration of soil C fluxes should be considered in the ecological process models.

Effect of farm yard manure on chemical fractionation of cadmium and its bio-availability to maize crop grown on sewage irrigated coarse textured soil.

PubMed

Khurana, M P S; Kansal, B D

2014-03-01

Cadmium is a potentially toxic heavy metal that enters food chain from the soil through various anthropogenic sources. Availability of metal ions in contaminated soils can be reduced by the addition of organic amendments. In this study, effect of organic matter -farm yard manure (FYM) amendment on fractionation and availability of Cd to maize was evaluated. A green house experiment was conducted to determine the toxicity and uptake of Cd by maize in sandy loam soil with and without organic matter. Four levels of Cd (0, 10, 20 and 40 mg kg(-1) soil) and two levels of FYM (0 and 20 tonnes ha(-1)) with three replication in a completely randomized factorial design. Concentration of Cd in maize increased with increasing rate of Cd application. Application of organic matter increased the dry matter yield of maize while reduced the uptake of metal. All the fractions exhibited increase with Cd rates. The addition of organic amendment declined significantly the concentration of water soluble and exchangeable Cd, but increased the amounts of these metals into less mobile fractions (Fe/Mn oxide, organic matter and residual). Dominance of insoluble forms of Cd after the application of organic amendments may be ascribed to the increases of soil OM, pH, EC and available P contents which caused transformation or redistribution of the sorbed phases. This resulted in increasing Cd retention in the more persistent fractions with application of FYM at the expense of reductions in the loosely bound fractions. Thus FYM appears to be agronomically feasible way to off set the adverse effect of Cd toxicity.

Microbial utilization of low molecular weight organic substrates in soil depends on their carbon oxidation state

NASA Astrophysics Data System (ADS)

Gunina, Anna; Smith, Andrew; Jones, Davey; Kuzyakov, Yakov

2017-04-01

Removal of low molecular weight organic substances (LMWOS), originating from plants and microorganisms, from soil solution is regulated by microbial uptake. In addition to the concentration of LMWOS in soil solution, the chemical properties of each substance (e.g. C oxidation state, number of C atoms, number of -COOH groups) can affect their uptake and subsequent partitioning of C within the soil microbial community. The aim of this study was to trace the initial fate of three dominant classes of LMWOS in soil (sugars, carboxylic and amino acids), including their removal from solution and utilization by microorganisms, and to reveal the effect of substance chemical properties on these processes. Soil solution, spiked at natural abundance levels with 14C-labelled glucose, fructose, malate, succinate, formate, alanine or glycine, was added to the soil and 14C was traced in the dissolved organic carbon (DOC), CO2, cytosol and soil organic carbon (SOC) over 24 hours. The half-life time of all LMWOS in the DOC (T1 /2-solution) varied between 0.6-5.0 min showing extremely fast initial uptake of LMWOS. The T1 /2-solution of substances was dependent on C oxidation state, indicating that less oxidized organic substances (with C oxidation state "0") were retained longer in soil solution than oxidized substances. The LMWOS-C T1 /2-fast, characterizing the half-life time of 14C in the fast mineralization pool, ranged between 30 and 80 min, with the T1 /2-fast of carboxylic acids (malic acid) being the fastest and the T1 /2-fast of amino acids (glycine) being the slowest. An absence of correlation between T1 /2-fast and either C oxidation state, number of C atoms, or number of -COOH groups suggests that intercellular metabolic pathways are more important for LMWOS transformation in soil than their basic chemical properties. The CO2 release during LMWOS mineralization accounted for 20-90% of 14C applied. Mineralization of LMWOS was the least for sugars and the greatest for carboxylic (formic) acids, whereas the 14C incorporations into cytosol and SOC were opposite. The portion of LMWOS mineralized to CO2 increased with their C oxidation state corresponding to the decrease of C incorporated into the cytosol and SOC pools. The ratio of 14C incorporated into cytosol to 14C incorporated into CO2 pool ranged between 0.03 and 1.19, being the lowest for carboxylic acids and highest for sugars, and decreased with substances C oxidation state. Thus, the C oxidation state is one of the crucial parameter of LMWOS determining their partitioning between two main C fluxes: mineralization and microbial stabilization/immobilization. Our data suggests that the uptake of common LMWOS from soil solution by microorganisms and final LMWOS-C partitioning within microbial biomass may be possible to predict from the physicochemical properties of the substance.

The relationship between metal toxicity and biotic ligand binding affinities in aquatic and soil organisms: a review.

PubMed

Ardestani, Masoud M; van Straalen, Nico M; van Gestel, Cornelis A M

2014-12-01

The biotic ligand model (BLM) is a theoretical, potentially mechanistic approach to assess metal bioavailability in soil and aquatic systems. In a BLM, toxicity is linked to the fraction of biotic ligand occupied, which in turn, depends on the various components of the solution, including activity of the metal. Bioavailability is a key factor in determining toxicity and uptake of metals in organisms. In this study, the present status of BLM development for soil and aquatic organisms is summarized. For all species and all metals, toxicity was correlated with the conditional biotic ligand binding constants. For almost all organisms, values for Ag, Cu, and Cd were higher than those for Zn and Ni. The constants derived for aquatic systems seem to be equally valid for soil organisms, but in the case of soils, bioavailability from the soil solution is greatly influenced by the presence of the soil solid phase. Copyright © 2014 Elsevier Ltd. All rights reserved.

Application of biosolids in mineral sands mine rehabilitation: use of stockpiled topsoil decreases trace element uptake by plants.

PubMed

Rate, Andrew W; Lee, Karen M; French, Peter A

2004-02-01

Mineral sands mining involves stripping topsoil to access heavy-mineral bearing deposits, which are then rehabilitated to their original state, commonly pasture in south-west Western Australia. Organic amendments such as biosolids (digested sewage sludge) can contribute organic carbon to the rehabilitating system and improve soil chemical fertility and physical conditions. Use of biosolids also introduces the risk of contamination of the soil-plant system with heavy metals, but may be a useful source of trace elements to plants if the concentrations of these elements are low in unamended soil. We expected that biosolids amendment of areas mined for mineral sands would result in increased concentrations of metals in soils and plants, and that metal uptake would be decreased by adding stockpiled topsoil or by liming. A glasshouse experiment growing a mixed annual ryegrass (Lolium rigidum)-subterranean clover (Trifolium subterraneum) sward was conducted using two soil materials (residue sand/clay and conserved topsoil) from a mineral sands mine amended with different rates of biosolids (0, 10, 20, 50 dry t/ha), and including a liming treatment (2 t/ha). Total concentrations of metals (As, Cd, Co, Cr, Cu, Ni, Pb and Zn) in soil increased with increasing rate of biosolids application. Metal uptake was generally lower where topsoil was present and was decreased by liming. With increasing biosolids application, plant metal concentrations increased for Cd, Ni and Zn but decreased or were erratic for other elements. In clover, biosolids application removed the Zn deficiency observed where biosolids were not applied. Plant uptake of all elements increased with increasing biosolids application, suggesting dilution by increased plant biomass was responsible for erratic metal concentration results. Despite the observed increases in uptake of metals by plants, metal concentrations in both species were low and below food standard thresholds. It is unlikely that a single application of biosolids in this system posed a threat from heavy metal contamination of soils or plants, and was beneficial in terms of Zn nutrition of T. subterraneum.

Effects of elevated CO2 on soil organic matter turnover and plant nitrogen uptake: First results from a dual labeling mesocosm experiment

NASA Astrophysics Data System (ADS)

Eder, Lucia Muriel; Weber, Enrico; Schrumpf, Marion; Zaehle, Sönke

2017-04-01

The response of plant growth to elevated concentrations of CO2 (eCO2) is often constrained by plant nitrogen (N) uptake. To overcome potential N limitation, plants may invest photosynthetically fixed carbon (C) into N acquiring strategies, including fine root biomass, root exudation, or C allocation to mycorrhizal fungi. In turn, these strategies may affect the decomposition of soil organic matter, leading to uncertainties in net effects of eCO2 on C storage. To gain more insight into these plant-soil C-N-interactions, we combined C and N stable isotope labeling in a mesocosm experiment. Saplings of Fagus sylvatica L. were exposed to a 13CO2 enriched atmosphere at near ambient (380 ppm) or elevated (550 ppm) CO2 concentrations for four months of the vegetation period in 2016. Aboveground and belowground net CO2 fluxes were measured separately and the 13C label enabled partitioning of total soil CO2 efflux into old, soil derived and new, plant-derived C. We used ingrowth cores to assess effects of eCO2on belowground C allocation and plant N uptake in more detail and in particular we evaluated the relative importance of ectomycorrhizal associations. In the soil of each sapling, ingrowth cores with different mesh sizes allowed fine roots or only mycorrhizal hyphae to penetrate. In one type of ingrowth core each, we incorporated fine root litter that was enriched in 15N. Additionally, total N uptake was estimated by using 15N enriched saplings and unlabeled control plants. We found that eCO2 increased aboveground net CO2 exchange rates by 19% and total soil respiration by 11%. The eCO2 effect for GPP and also for NPP was positive (+23% and +11%, respectively). By combining gaseous C fluxes with data on new and old C stocks in bulk soil and plants through destructive harvesting in late autumn 2016, we will be able to infer net effects of eCO2 on the fate of C in these mesocosms. Biomass allocation patterns can reveal physiological responses to high C availability under potentially constrained N availability. Together with data on biomass production within the ingrowth cores these results elucidate mechanisms affecting soil C storage and plant N uptake under eCO2.

Plant uptake of explosives from contaminated soil at the Joliet Army Ammunition Plant

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zellmer, S.D.; Schneider, J.F.; Tomczyk, N.A.

1995-04-01

Explosives and their degradation products may enter the animal and human food chains through plants grown on soils contaminated with explosives. Soil and plant samples were collected from the Group 61 area at the Joliet Army Ammunition Plant and analyzed to determine the extent to which 2,4,6-trinitrotoluene (TNT) and its degradation products are taken up by existing vegetation and crops growing on contaminated soils. Neither TNT nor its degradation products was detected in any of the aboveground plant organs of existing vegetation. Oat (Avena sativa L.) and perennial ryegrass (Lolium perenne L.) were planted on TNT-contaminated soils amended with threemore » levels of chopped grass hay. Extractable TNT concentrations in hay-amended soils were monitored for almost 1 year. Crop establishment and growth improved with increased levels of hay amendment, but TNT uptake was not affected or detected in any aboveground crop organs. Evidence was found to indicate that soil manipulation and hay addition may reduce extractable TNT concentration in soils, but the wide variations in TNT concentrations in these soils prevented development of conclusive evidence regarding reduction of extractable TNT concentrations. Results from this study suggest that vegetation grown on TNT-contaminated soils is not a major health concern because TNT and its degradation products were not detected in aboveground plant organs. However, low concentrations of TNT, 4-amino-2,6-dinitrotoluene, and 2-amino-4,6-dinitrotoluene were detected in or on some existing vegetation and crop roots. 21 refs., 10 figs., 26 tabs.« less

Assessing biochar and compost from the organic fraction of municipal solid waste on nutrient availability and plant growth of lettuce

NASA Astrophysics Data System (ADS)

Regkouzas, Panagiotis; Manolikaki, Ioanna; Diamadopoulos, Evan

2017-04-01

Biochars have a high variability in chemical composition, which is determined by types of feedstock and pyrolysis conditions. Inorganic compounds, such as N, P, K and Ca, retained in biochar could be released and become available to plants. The aim of this study was to understand the effect of biochar and compost addition, derived from the organic fraction of municipal solid wastes at two different pyrolysis temperatures 3000C (BC300) and 6000C (BC600), on phosphorus availability and plant growth of lettuce (Lactuca sativa L.) grown in an alkaline loam soil. This type of soil is widely available in Greece, leading us to investigate ways to increase its fertility. A 39 d growth period of lettuce was studied in a greenhouse in triplicate. Treatments comprised of control soils (no addition of biochar or compost), soils treated only with compost (5%) or biochar (5%), and combinations of biochar (5%) plus compost (5%). No fertilization was added to any of the treatments. One biomass cut was obtained. Plant shoot yield and height were determined along with elemental concentration (N, P, K, Ca, Mg, Mn, Fe, Zn, Cu) and uptake of shoots. Results showed that BC300 combined with compost significantly increased P uptake of lettuce. On the other hand, BC600 plus compost, along with the two biochar-only treatments, significantly decreased Ca and Mg uptake of lettuce. N, K, Fe, Zn, Mn and Cu uptakes were not affected by the application of biochar, compost or the combined treatments. Despite the significant increase of P uptake, plant height and shoot yield were not significantly influenced by any of the treatments.

Final Technical Report: Mercury Release from Organic Matter (OM) and OM-Coated Mineral Surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nagy, Kathryn L.

2015-08-18

Chemical reactions between mercury, a neurotoxin, and sulfur, an essential nutrient, in the environment control to a large extent the distribution and amount of mercury available for uptake by living organisms. The largest reservoir of sulfur in soils is in living, decaying, and dissolved natural organic matter. The decaying and dissolved organic matter can also coat the surfaces of minerals in the soil. Mercury (as a divalent cation) can bind to the sulfur species in the organic matter as well as to the bare mineral surfaces, but the extent of binding and release of this mercury is not well understood.more » The goals of the research were to investigate fundamental relationships among mercury, natural organic matter, and selected minerals to better understand specifically the fate and transport of mercury in contaminated soils downstream from the Y-12 plant along East Fork Poplar Creek, Tennessee, and more generally in any contaminated soil. The research focused on (1) experiments to quantify the uptake and release of mercury from two clay minerals in the soil, kaolinite and vermiculite, in the presence and absence of dissolved organic matter; (2) release of mercury from cinnabar under oxic and anoxic conditions; (3) characterization of the forms of mercury in the soil using synchrotron X-ray absorption spectroscopic techniques; and, (4) determination of molecular forms of mercury in the presence of natural organic matter. We also leveraged funding from the National Science Foundation to (5) evaluate published approaches for determining sulfur speciation in natural organic matter by fitting X-ray Absorption Near Edge Structure (XANES) spectra obtained at the sulfur K-edge and apply optimized fitting schemes to new measurements of sulfur speciation in a suite of dissolved organic matter samples from the International Humic Substances Society. Lastly, in collaboration with researchers at the University of Colorado and the U.S. Geological Survey in Boulder, Colorado, (6) we investigated the biogeochemical controls on the release of mercury in simulated flooding experiments using loose soils and intact soil cores from East Fork Poplar Creek.« less

Empirical evidence that soil carbon formation from plant inputs is positively related to microbial growth

Treesearch

Mark A. Bradford; Ashley D. Keiser; Christian A. Davies; Calley A. Mersmann; Michael S. Strickland

2012-01-01

Plant-carbon inputs to soils in the form of dissolved sugars, organic acids and amino acids fuel much of heterotrophic microbial activity belowground. Initial residence times of these compounds in the soil solution are on the order of hours, with microbial uptake a primary removal mechanism. Through microbial biosynthesis, the dissolved compounds become dominant...

Absence of plant uptake and translocation of polybrominated biphenyls (PBBs).

PubMed

Chou, S F; Jacobs, L W; Penner, D; Tiedje, J M

1978-04-01

Studies of polybrominated biphenyl (PBB) uptake by plants have been conducted in hydroponic solutions and in greenhouse experiments with soil. Autoradiograms of corn and soybean seedlings grown in hydroponic solutions showed no translocation of 14C-PBB from 14C-PBB-treated solutions to plant tops or within the leaf from 14C-PBB-treated spots on the upper leaf surface. A significant portion of the 14C-PBB associated with the roots was removed when the roots were dipped in acetone. Three root crops (radishes, carrots, and onions) were grown in two soils, each treated with a mixture of FireMaster BP-6 (PBB) and 14C-PBB to achieve final concentrations of 100 ppm and 100 ppb. All roots showed more PBB when grown in the soil with the lower clay and organic matter content than they did when grown in the soil with more clay and organic matter. In the latter soil (clay loam) no PBB was detected in any roots from the 100 ppb treatment. More PBB was associated with roots of carrot than of radish or onion. Corn leaf whorls containing dust from a PBB contamination soil and washed radishes from a heavily contaminated garden showed no PBB.

Soil Organic Carbon and Nitrogen in the 21st Century: Projections of the Responses of an Old-Growth Douglas-Fir Forest in the Pacific Northwest under RCP 4.5 and RCP 8.5 Climate Change Scenarios

NASA Astrophysics Data System (ADS)

Dong, Z.; Driscoll, C. T.; Hayhoe, K.; Pourmokhtarian, A.; Stoner, A. M. K.

2015-12-01

The biogeochemical model, PnET-BGC, was applied to Watershed 2 in H. J. Andrews Experimental Forest, Oregon, to project ecosystem carbon and nitrogen responses under different future climate change scenarios. Downscaled climate change inputs derived from two IPCC scenarios (RCP 4.5 and RCP 8.5) were interpreted by four Atmosphere-Ocean General Circulation Models (AOGCMs) at Andrews Forest. Model results showed decreases in foliar production under high temperature/CO2 scenarios due to increasing vapor pressure deficit. Projections by PnET-BGC suggest that under future climate changes in primary production coupled with an increasing rate of decomposition may result in decreases in litterfall carbon and nitrogen and soil organic carbon and nitrogen. Such changes in soil organic carbon and nitrogen may cause wide range of changes in ecosystem processing of nitrogen and carbon, such as nitrogen mineralization, plant NH4+ uptake, and stream NH4+ and dissolved organic carbon concentrations depending on climate change scenario considered. Under most high emission scenarios, net nitrogen mineralization and plant NH4+ uptake are projected to increase until the end of this century as result of increasing temperature and associated higher rates of decomposition. An accumulation of nitrogen in plant tissue due to decreasing litterfall decreases plant demand for nitrogen. Such changes in nitrogen mineralization and uptake will result in increase in stream NH4+ concentrations under high emission scenarios. Under low emission scenarios, net nitrogen mineralization and plant NH4+ uptake are projected to increase up to mid-century, then slightly decrease until the end of the century.

The effect of hydraulic lift on organic matter decomposition, soil nitrogen cycling, and nitrogen acquisition by a grass species.

PubMed

Armas, Cristina; Kim, John H; Bleby, Timothy M; Jackson, Robert B

2012-01-01

Hydraulic lift (HL) is the passive movement of water through plant roots, driven by gradients in water potential. The greater soil-water availability resulting from HL may in principle lead to higher plant nutrient uptake, but the evidence for this hypothesis is not universally supported by current experiments. We grew a grass species common in North America in two-layer pots with three treatments: (1) the lower layer watered, the upper one unwatered (HL), (2) both layers watered (W), and (3) the lower layer watered, the upper one unwatered, but with continuous light 24 h a day to limit HL (no-HL). We inserted ingrowth cores filled with enriched-nitrogen organic matter ((15)N-OM) in the upper layer and tested whether decomposition, mineralization and uptake of (15)N were higher in plants performing HL than in plants without HL. Soils in the upper layer were significantly wetter in the HL treatment than in the no-HL treatment. Decomposition rates were similar in the W and HL treatments and lower in no-HL. On average, the concentration of NH(4)(+)-N in ingrowth cores was highest in the W treatment, and NO(3)(-)-N concentrations were highest in the no-HL treatment, with HL having intermediate values for both, suggesting differential mineralization of organic N among treatments. Aboveground biomass, leaf (15)N contents and the (15)N uptake in aboveground tissues were higher in W and HL than in no-HL, indicating higher nutrient uptake and improved N status of plants performing HL. However, there were no differences in total root nitrogen content or (15)N uptake by roots, indicating that HL affected plant allocation of acquired N to photosynthetic tissues. Our evidence for the role of HL in organic matter decomposition and nutrient cycling suggests that HL could have positive effects on plant nutrient dynamics and nutrient turnover.

[Effects of sulfur on transformation of selenium in soil and uptake of selenium in rape].

PubMed

Liu, Xin-wei; Duan, Bi-huil; Xia, Quan-jie; Jiao, Wei; Guo, Zai-hua; Hu, Cheng-xiao; Zhao, Zhu-qing

2014-09-01

The high-quality, high-yield rape (Brassica napus L. cv. Xiangnongyou 571) was chosen as the experimental material to undergo seedling stage soil cultivation and solution cultivation. This study was aimed to investigate the effects of sulfur (S) on the fraction and species of amend selenium (Se) in soil by applying S fertilizer, and to reveal the mechanism through which S controls the Se uptake of rape. The results showed that applications of both Se at 5 mg.kg-1 and S at 150 mg.kg-1 could provide some boost to rape growth, however such boost was unremarkable; S application could significantly reduce Se content in shoots and roots by as much as 64. 0% and 39. 1% , respectively; S application could significantly decrease the pH value and increase the organic matter content by as much as 0. 65 units and 1.76 g.kg-1 , respectively; S application could significantly decrease soluble Se and Fe/Mn oxide-bound Se, and significantly increase organic matter-bound Se, however, there was no remarkable effect on exchangeable and residual Se. S could significantly decrease the content of Se(IV) in the soluble Se and significantly increase the content of Se(IV) in the exchangeable Se, with remarkable decrease in Se(VI) content in both fractions, and no remarkable effect on Se(II). S had a profound effect on the uptake of Se by rape seedlings when Se( IV) and Se( VI) were applied. The Se contents in shoot and root of the Se( VI)-treated rape were 7.3 and 3.2 times respectively as high as that of the Se( IV)-treated rape, while with a S rate of 2 mmolL-1, their Se contents were lower than 32.6% and 8.7% of that of the Se(IV)-treated rape. In conclusion, in addition to improving crop growth, appropriate amount of S fertilizer could also reduce soil pH and increase organic content, causing available Se in soil to be Fe/Mn oxide-bound and organic matter-bound, and retarding its transformation to Se( VI), thus reducing Se uptake by rape. This has significant value for regulation of Se content in crops from Se-rich regions, ensuring food quality and safety, benefiting the long-term use of soil Se resources and regional economic development.

Soil organic matter content effects on dermal pesticide bioconcentration in American toads (Bufo americanus).

EPA Science Inventory

Pesticides have been implicated as a major factor in global amphibian declines and may pose great risk to terrestrial phase amphibians moving to and from breeding ponds on agricultural landscapes. Dermal uptake from soil is known to occur in amphibians, but predicting pesticide a...

Modelling of trace metal uptake by roots taking into account complexation by exogenous organic ligands

NASA Astrophysics Data System (ADS)

Jean-Marc, Custos; Christian, Moyne; Sterckeman, Thibault

2010-05-01

The context of this study is phytoextraction of soil trace metals such as Cd, Pb or Zn. Trace metal transfer from soil to plant depends on physical and chemical processes such as minerals alteration, transport, adsorption/desorption, reactions in solution and biological processes including the action of plant roots and of associated micro-flora. Complexation of metal ions by organic ligands is considered to play a role on the availability of trace metals for roots in particular in the event that synthetic ligands (EDTA, NTA, etc.) are added to the soil to increase the solubility of the contaminants. As this role is not clearly understood, we wanted to simulate it in order to quantify the effect of organic ligands on root uptake of trace metals and produce a tool which could help in optimizing the conditions of phytoextraction.We studied the effect of an aminocarboxilate ligand on the absorption of the metal ion by roots, both in hydroponic solution and in soil solution, for which we had to formalize the buffer power for the metal. We assumed that the hydrated metal ion is the only form which can be absorbed by the plants. Transport and reaction processes were modelled for a system made up of the metal M, a ligand L and the metal complex ML. The Tinker-Nye-Barber model was adapted to describe the transport of solutes M, L and ML in the soil and absorption of M by the roots. This allowed to represent the interactions between transport, chelating reactions, absorption of the solutes at the root surface, root growth with time, in order to simulate metal uptake by a whole root system.Several assumptions were tested such as i) absorption of the metal by an infinite sink and according to a Michaelis-Menten kinetics, solutes transport by diffusion with and without ii) mass flow and iii) soil buffer power for the ligand L. In hydroponic solution (without soil buffer power), ligands decreased the trace metal flux towards roots, as they reduced the concentration of hydrated metal ion. In soil, depending on the L/M ratio, the presence of metal complexes could increase the metal flux taken up by roots since the ligand desorbed the metal on soil solid phase while the complex dissociated and provided metal ions to the solution in the vicinity of the root.The model enabled to surround the conditions in which phytoextraction is thus optimized. In addition of complexation by organic ligands added to the soil, we expect to integrate complexation by roots organic exudates and by soil organic matter, as well as the competition of the metal ions with Ca2+ et H+.

Root uptake of 137Cs by natural and semi-natural grasses as a function of texture and moisture of soils.

PubMed

Grytsyuk, N; Arapis, G; Davydchuk, V

2006-01-01

This work studies the dependence of 137Cs root uptake on the structure of landscape, especially on texture and moisture of soils, under natural conditions, on abandoned radiopolluted lands in Northern Ukraine. Researches were carried out on a wide range of landscape conditions, at various levels of 137Cs contamination (from 20 up to 5000 kBqm(-2)), with different types of soils (approx. 20 soil varieties), which differ in texture, granulometric composition, degrees of gleyization and water regime, and anthropogenic transformation. The results showed that transfer factor (TF) values of 137Cs differ 50 times for the natural grassy coenoses and 8 times for the semi-natural ones. The lowest 137Cs TF values were measured in the herbages of dry meadows at automorphous loamy soils, while the highest were observed in wetland meadows at organic soils. Finally, the correlation between 137Cs TF values and granulometric composition of soil was determined for both automorphic and hydromorphic mineral soils.

Phytoremediation of Cu and Zn by vetiver grass in mine soils amended with humic acids.

PubMed

Vargas, Carmen; Pérez-Esteban, Javier; Escolástico, Consuelo; Masaguer, Alberto; Moliner, Ana

2016-07-01

Phytoremediation of contaminated mine soils requires the use of fast-growing, deep-rooted, high-biomass, and metal-tolerant plants with the application of soil amendments that promote metal uptake by plants. A pot experiment was performed to evaluate the combined use of vetiver grass (Chrysopogon zizanioides) and humic acid for phytoremediation of Cu and Zn in mine soils. Vetiver plants were grown in soil samples collected from two mine sites of Spain mixed with a commercial humic acid derived from leonardite at doses of 0, 2, 10, and 20 g kg(-1). Plant metal concentrations and biomass were measured and metal bioavailability in soils was determined by a low molecular weight organic acid extraction. Results showed that humic acid addition decreased organic acid-extractable metals in soil. Although this extraction method is used to estimate bioavailability of metals, it was not a good estimator under these conditions due to competition with the strong chelators in the added humic acid. High doses of humic acid also promoted root growth and increased Cu concentrations in plants due to formation of soluble metal-organic complexes, which enhanced removal of this metal from soil and its accumulation in roots. Although humic acid was not able to improve Zn uptake, it managed to reduce translocation of Zn and Cu to aerial parts of plants. Vetiver resulted unsuitable for phytoextraction, but our study showed that the combined use of this species with humic acid at 10-20 g kg(-1) could be an effective strategy for phytostabilization of mine soils.

Ca biogeochemical cycle at the beech tree - soil solution interface from the Strengbach CZO (NE France): a clue from stable Ca and radiogenic Sr isotopes

NASA Astrophysics Data System (ADS)

Schmitt, Anne-Désirée; Gangloff, Sophie; Labolle, François; Chabaux, François; Stille, Peter

2017-04-01

Stable calcium and radiogenic Sr are analysed in several organs from two beech trees that were collected in June and September in the Strengbach CZO (NE France) and in corresponding soil solutions. The combination of these two isotopic systems shows that the isotopic signatures of roots are dominated by Ca fractionation mechanisms and Sr, and thus Ca, source variations. In contrast, translocation mechanisms are only governed by Ca fractionation processes. This study also confirms in the field that the Ca uptake mechanisms from nutritive solutions are controlled by adsorption processes in small roots because of physico-chemical mechanisms. Similarly, a study of surface soil solutions suggests that recent soil waters are less affected by vegetation uptake than in the past, probably because of a decline in the growth of the vegetation that is linked to climate warming, which causes drought episodes. Thus, soil solutions reflect the role of soil components in addition to nutrient uptake by vegetation. This isotopic Ca-Sr study also helps to identify one-time events that are caused by snow cover melting and/or dry episodes that release cations.

Soil geochemical factors regulate Cd accumulation by metal hyperaccumulating Noccaea caerulescens (J. Presl & C. Presl) F.K. Mey in field-contaminated soils.

PubMed

Rosenfeld, Carla E; Chaney, Rufus L; Martínez, Carmen E

2018-03-01

Cadmium contamination in soil is a substantial global problem, and of significant concern due to high food-chain transfer. Cadmium hyperaccumulators are of particular interest because of their ability to tolerate and take up significant amounts of heavy metal pollution from soils. One particular plant, Noccaea caerulescens (formerly, Thlaspi caerulescens), has been extensively studied in terms of its capacity to accumulate heavy metals (specifically Zn and Cd), though these studies have primarily utilized hydroponic and metal-spiked model soil systems. We studied Cd and nutrient uptake by two N. caerulescens ecotypes, Prayon (Zn-only hyperaccumulator) and Ganges (Zn- and Cd-hyperaccumulator) in four long-term field-contaminated soils. Our data suggest that individual soil properties such as total soil Cd, Zn:Cd molar ratio, or soil pH do not accurately predict Cd uptake by hyperaccumulating plants. Additionally, total Cd uptake by the hyperaccumulating Ganges ecotype was substantially less than its physiological capacity, which is likely due to Cd-containing solid phases (primarily iron oxides) and pH that play an important role in regulating and limiting Cd solubility. Increased P accumulation in the Ganges leaves, and greater plant Fe accumulation from Cd-containing soils suggests that rhizosphere alterations via proton, and potentially organic acid, secretion may also play a role in nutrient and Cd acquisition by the plant roots. The current study highlights the role that soil geochemical factors play in influencing Cd uptake by hyperaccumulating plants. While these plants may have high physiological potential to accumulate metals from contaminated soils, individual soil geochemical factors and the plant-soil interactions in that soil will dictate the actual amount of phytoextractable metal. This underlines the need for site-specific understanding of metal-containing solid phases and geochemical properties of soils before undertaking phytoextraction efforts. Copyright © 2017 Elsevier B.V. All rights reserved.

Identifying calcium sources at an acid deposition-impacted spruce forest: A strontium isotope, alkaline earth element multi-tracer approach

USGS Publications Warehouse

Bullen, T.D.; Bailey, S.W.

2005-01-01

Depletion of calcium from forest soils has important implications for forest productivity and health. Ca is available to fine feeder roots from a number of soil organic and mineral sources, but identifying the primary source or changes of sources in response to environmental change is problematic. We used strontium isotope and alkaline earth element concentration ratios of trees and soils to discern the record of Ca sources for red spruce at a base-poor, acid deposition-impacted watershed. We measured 87Sr/86Sr and chemical compositions of cross-sectional stemwood cores of red spruce, other spruce tissues and sequential extracts of co-located soil samples. 87Sr/86Sr and Sr/Ba ratios together provide a tracer of alkaline earth element sources that distinguishes the plant-available fraction of the shallow organic soils from those of deeper organic and mineral soils. Ca/Sr ratios proved less diagnostic, due to within-tree processes that fractionate these elements from each other. Over the growth period from 1870 to 1960, 87Sr/86Sr and Sr/Ba ratios of stemwood samples became progressively more variable and on average trended toward values that considered together are characteristic of the uppermost forest floor. In detail the stemwood chemistry revealed an episode of simultaneous enhanced uptake of all alkaline earth elements during the growth period from 1930 to 1960, coincident with reported local and regional increases in atmospheric inputs of inorganic acidity. We attribute the temporal trends in stemwood chemistry to progressive shallowing of the effective depth of alkaline earth element uptake by fine roots over this growth period, due to preferential concentration of fine roots in the upper forest floor coupled with reduced nutrient uptake by roots in the lower organic and upper mineral soils in response to acid-induced aluminum toxicity. Although both increased atmospheric deposition and selective weathering of Ca-rich minerals such as apatite provide possible alternative explanations of aspects of the observed trends, the chemical buffering capacity of the forest floor-biomass pool limits their effectiveness as causal mechanisms. ?? Springer 2005.

Relating environmental availability to bioavailability: soil-type-dependent metal accumulation in the oligochaete Eisenia andrei.

PubMed

Peijnenburg, W J; Baerselman, R; de Groot, A C; Jager, T; Posthuma, L; Van Veen, R P

1999-11-01

Body residues are often better estimates of the amount of a chemical at the sites of toxic action in an organism than ambient soil concentrations, because bioavailability differences among soils are explicitly taken into account in considerations of body residues. Often, however, insufficient attention is paid to the rate and extent at which tissue concentrations respond to soil concentrations and soil characteristics. In this contribution the impact of soil characteristics on the environmental bioavailability of heavy metals for the oligochaete worm Eisenia andrei is reported. Uptake of As, Cd, Cr, Cu, Ni, Pb, and Zn in 20 Dutch field soils and in OECD artificial soil was quantified as a function of time. Internal metal concentrations varied less than the corresponding external levels. Metal uptake and elimination were both metal- and species-dependent. Worms typically attained steady-state concentrations rapidly for Cr, Cu, Ni, and Zn. Internal concentrations similar to those in the cultivation medium, linearly increasing body concentrations, or steady-state internal concentrations well above those in the cultivation medium were found for As, Cd, and Pb. Multivariate expressions were derived to describe uptake rate constants, steady-state concentrations, and bioaccumulation factors as a function of soil characteristics. Soil acidity is the most important solid-phase characteristic modulating the availability of As, Cd, and Pb. Although additional semimechanistic calculations yielded evidence of pore-water-related uptake of Cd and Pb modulated by competition between H(+) and metal ions at the active sites of the membranes, the findings for Cr, Cu, Ni, and Zn point to additional influences, among which is probably regulation. Copyright 1999 Academic Press.

Soil nitrogen patterns induced by colonization of Polygonum cuspidatum on Mt. Fuji.

PubMed

Hirose, T; Tateno, M

1984-02-01

The spatial pattern of soil nitrogen was analyzed for a patchy vegetation formed by the colonization of Polygonum cuspidatum in a volcanic "desert" on Mt. Fuji. Soils were sampled radially from the bare ground to the center of the patch, and analyses were done for bulk density, water content, soil acidity, organic matter, organic nitrogen, and ammonium and nitrate nitrogen. The soils matured with succession from the bare ground through P. cuspidatum to Miscanthus oligostachyus and Aster ageratoides sites: bulk density decreased, and water content, organic matter, organic nitrogen, and ammonium nitrogen increased. Nitrate nitrogen showed the highest values at the P. cuspidatum site. Application of principal component analysis to the soil data discriminated two component factors which control the variation of soil characteristics: the first factor is related to soil formation and the second factor to nitrogen mineralization and nitrification. The effect of soil formation on nitrogen mineralization and nitrification was analyzed with a first-order kinetic model. The decreasing trends with soil formation in the ratios of mineral to organic nitrogen and of nitrate to ammonium nitrogen could be accounted for by the higher activity of immobilization by microorganisms and uptake by plants in the more mature ecosystem.

Influence of Plants on Chlorine Cycling in Terrestrial Environments

NASA Astrophysics Data System (ADS)

Montelius, Malin; Thiry, Yves; Marang, Laura; Ranger, Jacques; Cornelis, Jean-Thomas; Svensson, Teresia; Bastviken, David

2016-04-01

Chlorine (Cl), one of the 20 most abundant elements on Earth, is crucial for life as a regulator of cellular ionic strength and an essential co-factor in photosynthesis. Chlorinated organic compounds (Clorg) molecules are surprisingly abundant in soils, in fact many studies during the last decades show that Clorg typically account for more than 60% of the total soil Cl pool in boreal and temperate forest soils and frequently exceed chloride (Cl-) levels. The natural and primarily biotic formation of this Clorg pool has been confirmed experimentally but the detailed content of the Clorg pool and the reasons for its high abundance remains puzzling and there is a lack of Cl budgets for different ecosystems. Recently, the radioisotope 36Cl has caused concerns because of presence in radioactive waste, a long half-life (301 000 years), potential high mobility, and limited knowledge about Cl residence times, speciation and uptake by organisms in terrestrial environments. The chlorination of organic molecules may influence the pool of available Cl- to organisms and thereby the Cl cycling dynamics. This will prolong residence times of total Cl in the soil-vegetation system, which affects exposure times in radioactive 36Cl isotope risk assessments. We tested to what extent the dominating tree species influences the overall terrestrial Cl cycling and the balance between Cl- and Clorg. Total Cl and Clorg were measured in different tree compartments and soil horizons in the Breuil experimental forest, Bourgogne, established in 1976 and located at Breuil-Chenue in Eastern France. The results from this field experiment show how the dominating tree species affected Cl cycling and accumulation over a time period of 30 years. Cl uptake by trees as well as content of both total Cl and Clorg in soil humus was much higher in experimental plots with coniferous forests compared to deciduous forests. The amounts of Clorg found in plant tissue indicate significant Clorg production inside trees in addition to substantial soil production of Clorg. A large and tree species dependent "luxury" Cl uptake, rapidly released through the leaves and returned to the soil as throughfall, was indicated for some tree species. The physiology of dominating tree species, along with tree-related soil microbial communities, thus appears more important for the local Cl levels and cycling than atmospheric Cl deposition.

Modeling the plant uptake of organic chemicals, including the soil-air-plant pathway.

PubMed

Collins, Chris D; Finnegan, Eilis

2010-02-01

The soil-air-plant pathway is potentially important in the vegetative accumulation of organic pollutants from contaminated soils. While a number of qualitative frameworks exist for the prediction of plant accumulation of organic chemicals by this pathway, there are few quantitative models that incorporate this pathway. The aim of the present study was to produce a model that included this pathway and could quantify its contribution to the total plant contamination for a range of organic pollutants. A new model was developed from three submodels for the processes controlling plant contamination via this pathway: aerial deposition, soil volatilization, and systemic translocation. Using the combined model, the soil-air-plant pathway was predicted to account for a significant proportion of the total shoot contamination for those compounds with log K(OA) > 9 and log K(AW) < -3. For those pollutants with log K(OA) < 9 and log K(AW) > -3 there was a higher deposition of pollutant via the soil-air-plant pathway than for those chemicals with log K(OA) > 9 and log K(AW) < -3, but this was an insignificant proportion of the total shoot contamination because of the higher mobility of these compounds via the soil-root-shoot pathway. The incorporation of the soil-air-plant pathway into the plant uptake model did not significantly improve the prediction of the contamination of vegetation from polluted soils when compared across a range of studies. This was a result of the high variability between the experimental studies where the bioconcentration factors varied by 2 orders of magnitude at an equivalent log K(OA). One potential reason for this is the background air concentration of the pollutants under study. It was found background air concentrations would dominate those from soil volatilization in many situations unless there was a soil hot spot of contamination, i.e., >100 mg kg(-1).

Soil contamination with cadmium, consequences and remediation using organic amendments.

PubMed

Khan, Muhammad Amjad; Khan, Sardar; Khan, Anwarzeb; Alam, Mehboob

2017-12-01

Cadmium (Cd) contamination of soil and food crops is a ubiquitous environmental problem that has resulted from uncontrolled industrialization, unsustainable urbanization and intensive agricultural practices. Being a toxic element, Cd poses high threats to soil quality, food safety, and human health. Land is the ultimate source of waste disposal and utilization therefore, Cd released from different sources (natural and anthropogenic), eventually reaches soil, and then subsequently bio-accumulates in food crops. The stabilization of Cd in contaminated soil using organic amendments is an environmentally friendly and cost effective technique used for remediation of moderate to high contaminated soil. Globally, substantial amounts of organic waste are generated every day that can be used as a source of nutrients, and also as conditioners to improve soil quality. This review paper focuses on the sources, generation, and use of different organic amendments to remediate Cd contaminated soil, discusses their effects on soil physical and chemical properties, Cd bioavailability, plant uptake, and human health risk. Moreover, it also provides an update of the most relevant findings about the application of organic amendments to remediate Cd contaminated soil and associated mechanisms. Finally, future research needs and directions for the remediation of Cd contaminated soil using organic amendments are discussed. Copyright © 2017 Elsevier B.V. All rights reserved.

Nitrogen uptake by Eucalyptus regnans and Acacia spp. - preferences, resource overlap and energetic costs.

PubMed

Pfautsch, Sebastian; Rennenberg, Heinz; Bell, Tina L; Adams, Mark A

2009-03-01

In southeastern Australia, the overstory species Eucalyptus regnans F. Muell. commonly grows with either of the two leguminous understory trees, Acacia melanoxylon (R. Br. Ex Ait. f.) or Acacia dealbata (Link.). Our objective was to elucidate interactions between the dominant eucalypt and its companion acacias for nitrogen (N) sources. Use of stable N isotopes as tracers revealed that ammonium was the preferred soil N source for all species, nevertheless, total N uptake varied greatly among species. Studies with double-labeled ((13)C/(15)N) glutamine indicated the uptake of this form of organic N in small amounts by both E. regnans and the Acacia spp. These and other data imply that, in contrast to boreal forests, organic N is not a significant component of N nutrition in mountain ash forests. Field and laboratory studies provided evidence that N(2)-fixation capacity of acacias varies with stand development, with N-fixing species playing an important role in N nutrition during the early but not the mature stages of forest growth. An index of N-uptake efficiency - the amount of oxygen consumed per unit N taken up - was compared across four N sources and three species. Nitrate uptake was the least efficient form of N acquisition, especially compared with ammonium uptake which was up to 30-fold less costly. Efficiency of glutamine uptake was intermediate between that of ammonium and nitrate. Differences in uptake efficiency among N forms were most pronounced for the Acacia spp. and least for E. regnans. We conclude that an overlap in requirements among sympatric Acacia spp. and E. regnans for specific soil N sources can be bypassed because of changes in biochemical strategies of Acacia spp. triggered by increasing soil N concentrations during stand development. Further studies might elucidate whether this is a common feature of complex forest ecosystems, or a specialty of the interaction between eucalypts and acacias.

Effects of zinc complexes on the distribution of zinc in calcareous soil and zinc uptake by maize.

PubMed

Alvarez, José M; Rico, María I

2003-09-10

The movement and availability of Zn from six organic Zn sources in a Typic Xerorthent (calcareous) soil were compared by incubation, column assay, and in a greenhouse study with maize (Zea mays L.). Zinc soil behavior was studied by sequential, diethylenetriaminepentaacetate, and Mehlich-3 extractions. In the incubation experiment, the differences in Zn concentration observed in the water soluble plus exchangeable fraction strongly correlated with Zn uptake by plants in the greenhouse experiment. Zinc applied to the surface of soil columns scarcely moved into deeper layers except for Zn-ethylenediaminetetraacetate (EDTA) that showed the greatest distribution of labile Zn throughout the soil and the highest proportion of leaching of the applied Zn. In the upper part of the column, changes in the chemical forms of all treatments occurred and an increase in organically complexed and amorphous Fe oxide-bound fractions was detected. However, the water soluble plus exchangeable fraction was not detected. The same results were obtained at the end of the greenhouse experiment. Significant increases were found in plant dry matter yield and Zn concentration as compared with the control treatment without Zn addition. Increasing Zn rate in the soil increased dry matter yield in all cases but Zn concentration in the plant increased only with Zn-EDTA and Zn-ethylenediaminedi-o-hydroxyphenyl-acetate (EDDHA) fertilizers. Higher Zn concentration in plants (50.9 mg kg(-)(1)) occurred when 20 mg Zn kg(-)(1) was added to the soil as Zn-EDTA. The relative effectiveness of the different Zn carriers in increasing Zn uptake was in the order: Zn-EDTA > Zn-EDDHA > Zn-heptagluconate >/= Zn-phenolate approximately Zn-polyflavonoid approximately Zn-lignosulfonate.

Can increased nitrogen uptake at elevated CO2 be explained by an hypothesis of optimal root function?

NASA Astrophysics Data System (ADS)

McMurtrie, R. E.; Norby, R. J.; Näsholm, T.; Iversen, C.; Dewar, R. C.; Medlyn, B. E.

2011-12-01

Forest free-air CO2 enrichment (FACE) experiments have shown that annual nitrogen (N) uptake increases when trees are grown at elevated CO2 (eCO2) and that increased N uptake is critical for a sustained growth response to eCO2. Processes contributing to increased N uptake at eCO2 may include: accelerated decomposition of soil organic matter due to enhanced root carbon (C) exudation (so-called rhizosphere priming); increased C allocation to fine roots and increased root production at depth, both of which enhance N acquisition; differences in soil N availability with depth; changes in the abundance of N in chemical forms with differing mobility in soil; and reduced N concentrations, reduced maintenance respiration rates, and increased longevities of deeper roots. These processes have been synthesised in a model of annual N uptake in relation to the spatial distribution of roots. We hypothesise that fine roots are distributed spatially in order to maximise annual N uptake. The optimisation hypothesis leads to equations for the optimal vertical distribution of root biomass in relation to the distribution of available soil N and for maximum annual N uptake. We show how maximum N uptake and rooting depth are related to total root mass, and compare the optimal solution with an empirical function that has been fitted to root-distribution data from all terrestrial biomes. Finally, the model is used to explore the consequences of rhizosphere priming at eCO2 as observed at the Duke forest FACE experiment (Drake et al. 2011, Ecology Letters 14: 349-357) and of increasing N limitation over time as observed at the Oak Ridge FACE experiment (Norby et al. 2010, Proc. Nat. Acad. Sci. USA 107: 19368-19373).

Role of model structure on the response of soil biogeochemistry to hydro-climatic fluctuations

NASA Astrophysics Data System (ADS)

Manzoni, S.; Porporato, A.

2005-05-01

Soil carbon and nutrient cycles are strongly affected by hydro-climatic variability, which interacts with the internal ecosystem structure. Here we test the implications of biogeochemical model structure on such dynamics by extending an existing model by the authors and coworkers. When forced by hydro-climatic fluctuations, the different model structures induce specific preferential nutrient paths among the soil pools, which in turn affect nutrient distribution and availability to microbes and plants. In particular, if it is assumed that microbes can directly assimilate organic nitrogen, plants tend to be inferior competitors for nutrients even in well-watered conditions, while if a certain amount of organic nitrogen is assumed to be mineralized without being first incorporated into microbial cells, vegetation can be advantaged over a wide range of soil moisture values. We also investigate the intensification of competition for nutrients (e.g., nitrogen) between plant and soil microbial communities under extreme hydrologic conditions, such as droughts and intense storms. Frequent rainfall events may determine ideal soil moisture conditions for plant uptake, enhancing nitrogen leaching while lowering oxygen concentration and inhibiting microbial activity. During droughts, the soil water potential often drops to the point of hampering the plant nutrient uptake while still remaining high enough for microbial decomposition and nitrogen immobilization. The interplay of microbe and vegetation water stress is investigated in depth as it controls the ability of one community (e.g., plants or soil microbes) to establish competitive advantage on the other. The long-term effects of these dynamics of competition and nutrient allocation are explored under steady-state and stochastic soil moisture conditions to analyze the feedbacks between soil organic matter and vegetation dynamics.

Soil inoculation with symbiotic microorganisms promotes plant growth and nutrient transporter genes expression in durum wheat

PubMed Central

Saia, Sergio; Rappa, Vito; Ruisi, Paolo; Abenavoli, Maria Rosa; Sunseri, Francesco; Giambalvo, Dario; Frenda, Alfonso S.; Martinelli, Federico

2015-01-01

In a field experiment conducted in a Mediterranean area of inner Sicily, durum wheat was inoculated with plant growth-promoting rhizobacteria (PGPR), with arbuscular mycorrhizal fungi (AMF), or with both to evaluate their effects on nutrient uptake, plant growth, and the expression of key transporter genes involved in nitrogen (N) and phosphorus (P) uptake. These biotic associations were studied under either low N availability (unfertilized plots) and supplying the soil with an easily mineralizable organic fertilizer. Regardless of N fertilization, at the tillering stage, inoculation with AMF alone or in combination with PGPR increased the aboveground biomass yield compared to the uninoculated control. Inoculation with PGPR enhanced the aboveground biomass yield compared to the control, but only when N fertilizer was added. At the heading stage, inoculation with all microorganisms increased the aboveground biomass and N. Inoculation with PGPR and AMF+PGPR resulted in significantly higher aboveground P compared to the control and inoculation with AMF only when organic N was applied. The role of microbe inoculation in N uptake was elucidated by the expression of nitrate transporter genes. NRT1.1, NRT2, and NAR2.2 were significantly upregulated by inoculation with AMF and AMF+PGPR in the absence of organic N. A significant down-regulation of the same genes was observed when organic N was added. The ammonium (NH4+) transporter genes AMT1.2 showed an expression pattern similar to that of the NO3- transporters. Finally, in the absence of organic N, the transcript abundance of P transporters Pht1 and PT2-1 was increased by inoculation with AMF+PGPR, and inoculation with AMF upregulated Pht2 compared to the uninoculated control. These results indicate the soil inoculation with AMF and PGPR (alone or in combination) as a valuable option for farmers to improve yield, nutrient uptake, and the sustainability of the agro-ecosystem. PMID:26483827

Uptake of PAHs into polyoxymethylene and application to oil-soot (lampblack)-impacted soil samples.

PubMed

Hong, Lei; Luthy, Richard G

2008-05-01

Polyoxymethylene (POM) is a polymeric material used increasingly in passive sampling of hydrophobic organic contaminants such as PAHs and PCBs in soils and sediments. In this study, we examined the sorption behavior of 12 PAH compounds to POM and observed linear isotherms spanning two orders of magnitude of aqueous concentrations. Uptake kinetic studies performed in batch systems for up to 54 d with two different volume ratios of POM-to-aqueous phase were evaluated with coupled diffusion and mass transfer models to simulate the movement of PAHs during the uptake process and to assess the physicochemical properties and experimental conditions that control uptake rates. Diffusion coefficients of PAHs in POM were estimated to be well correlated with diffusants' molecular weights as D(POM) proportional, variant(MW)(-3), descending from 2.3 x 10(-10) cm(2) s(-1) for naphthalene to 7.0 x 10(-11) cm(2) s(-1) for pyrene. The uptake rates for PAHs with log K(ow)<5.8 were controlled by the POM phase and the hydrophobicity of PAH compounds. For more hydrophobic PAH compounds, the aqueous boundary layer played an increasingly important role in determining the overall mass transfer rate. The POM partitioning technique was demonstrated to agree well with two other procedures for measuring PAH soil-water distribution coefficients in oil-soot (lampblack) containing soil samples.

Factors affecting the availability of americium-241 to the rice plant

DOE Office of Scientific and Technical Information (OSTI.GOV)

Adriano, D.C.

1979-11-01

Since there has been no published transuranic uptake data on the rice plant (Oryza sativa L.), greenhouse experiments were conducted to determine the effects of some factors on the uptake of /sup 241/Am by this crop. Results indicate that chelated /sup 241/Am (in the form of americium-241-diethylenetriaminepentaacetic acid) applied to the flood water was markedly taken up by the rice plant, compared to the nonchelated form. However, most of the accumulation of /sup 241/Am occurred in the vegetative parts and only trace amounts, if any, were translocated to the grain. Soil application of /sup 241/Am resulted in much lower uptake.more » Soil amendment with either diethylenetriaminepentaacetic acid (DTPA) or organic matter did not produce a discernible uptake pattern. A synthesis of published data on plant uptake of /sup 241/Am indicates that the concentration ratio (CR, a measure of availability of /sup 241/Am to the plants) values for /sup 241/Am for agricultural crops ranged from 10-/sup 6/ to 10/sup 1/ (from lowest to highest availability). Some factors that appear to influence /sup 241/Am uptake are as follows: plant parts (grain usually having lower CR), chelating agents (DTPA usually increasing the CR), organic matter (inconsistent effects although generally decreasing the CR), and lime (usually decreasing the CR).« less

Tracking nitrogen losses in a greenhouse crop rotation experiment in North China using the EU-Rotate_N simulation model.

PubMed

Guo, Ruiying; Nendel, Claas; Rahn, Clive; Jiang, Chunguang; Chen, Qing

2010-06-01

Vegetable production in China is associated with high inputs of nitrogen, posing a risk of losses to the environment. Organic matter mineralisation is a considerable source of nitrogen (N) which is hard to quantify. In a two-year greenhouse cucumber experiment with different N treatments in North China, non-observed pathways of the N cycle were estimated using the EU-Rotate_N simulation model. EU-Rotate_N was calibrated against crop dry matter and soil moisture data to predict crop N uptake, soil mineral N contents, N mineralisation and N loss. Crop N uptake (Modelling Efficiencies (ME) between 0.80 and 0.92) and soil mineral N contents in different soil layers (ME between 0.24 and 0.74) were satisfactorily simulated by the model for all N treatments except for the traditional N management. The model predicted high N mineralisation rates and N leaching losses, suggesting that previously published estimates of N leaching for these production systems strongly underestimated the mineralisation of N from organic matter. Copyright 2010 Elsevier Ltd. All rights reserved.

Fate of carbamazepine, its metabolites, and lamotrigine in soils irrigated with reclaimed wastewater: Sorption, leaching and plant uptake.

PubMed

Paz, Anat; Tadmor, Galit; Malchi, Tomer; Blotevogel, Jens; Borch, Thomas; Polubesova, Tamara; Chefetz, Benny

2016-10-01

Irrigation with reclaimed wastewater may result in the ubiquitous presence of pharmaceutical compounds (PCs) and their metabolites in the agroecosystem. In this study, we focused on two highly persistent anticonvulsant drugs, lamotrigine and carbamazepine and two of its metabolites (EP-CBZ and DiOH-CBZ), aiming to elucidate their behavior in agricultural ecosystem using batch and lysimeter experiments. Sorption of the studied compounds by soils was found to be governed mainly by the soil organic matter level. Sorption affinity of compounds to soils followed the order lamotrigine > carbamazepine > EP-CBZ > DiOH-CBZ. Sorption was reversible, and no competition between sorbates in bi-solute systems was observed. The results of the lysimeter studies were in accordance with batch experiment findings, demonstrating accumulation of lamotrigine and carbamazepine in top soil layers enriched with organic matter. Detection of carbamazepine and one of its metabolites in rain-fed wheat previously irrigated with reclaimed wastewater, indicates reversibility of their sorption, resulting in their potential leaching and their availability for plant uptake. This study demonstrates the long-term implication of introduction of PCs to the agroecosystem. Copyright © 2016 Elsevier Ltd. All rights reserved.

Carbon uptake in granular basalt is mitigated by added organic carbon.

NASA Astrophysics Data System (ADS)

Howard, E. L.; Van Haren, J. L. M.; Dontsova, K.

2017-12-01

Soils represent a large, and potentially long-term, storage component of the global carbon budget. Accurate projections of the response of soil respiration -the release of CO2 from soils generated either through root respiration or microbial respiration- to rainfall events remains one of the largest uncertainties in global carbon cycling models. Similarly poorly represented in models is the uptake of CO2 by basalt soils. In an attempt to address these unknowns, we have investigated how the addition of carbon influences the negative CO2 flux observed after wetting basalt. At Biosphere 2 we have constructed a large scale environmentally controlled experiment known as the Landscape Evolution Observatory (LEO). The objective of LEO is to observe the interactions between water, microbes, and climate in the formation of soil and landscapes utilizing granular basalt as a young soil. Previous studies show that water addition to the LEO soil leads to considerable CO2 uptake and that the addition of plants does not alter this response. In this study, we conducted soil incubations to investigate the effect of varying soil carbon content on CO2 fluxes. During incubations we measured CO2 emissions from two types of soil (granular basalt and sand soil) mixed with seven (0, 5, 10, 25, 50, 75, 100%) different proportions of Kalso prairie. The carbon content varied from nearly zero in the basalt to 6.5% in the Kalso Prarie soil. Other parameters that influence soil CO2 fluxes such as pH were taken into account. In conclusion, our experiments confirm that unweathered basalt will consume CO2 when wetted, whereas added carbon will cause a strong pulse of CO2 following water addition. This supports our hypotheses that the carbon content is a large contributor and that maturation of basalt flows will lead to a shift in the carbon dynamics from inorganic to organic dominated. Likewise, these transitions would be expected to be present during soil formation after primary succession and even after anthropogenic alteration to landscape function.

The remediation of the lead-polluted garden soil by natural zeolite.

PubMed

Li, Hua; Shi, Wei-yu; Shao, Hong-bo; Shao, Ming-an

2009-09-30

The current study investigated the remediation effect of lead-polluted garden soil by natural zeolite in terms of soil properties, Pb fraction of sequential extraction in soil and distribution of Pb in different parts of rape. Natural zeolite was added to artificially polluted garden soil to immobilize and limit the uptake of lead by rape through changing soil physical and chemical properties in the pot experiment under greenhouse conditions. Results indicated that the addition of natural zeolite could increase soil pH, CEC, content of soil organic matter and promote formation of soil aggregate. The application of zeolite decreased the available fraction of Pb in the garden soil by adjusting soil pH rather than CEC, and restrained the Pb uptake by rape. Data obtained suggested that the application of a dose of zeolite was adequate (>or=10 g kg(-1)) to reduce soluble lead significantly, even if lead pollution is severe in garden soil (>or=1000 mg kg(-1)). An appropriate dose of zeolite (20 g kg(-1)) could reduce the Pb concentration in the edible part (shoots) of rape up to 30% of Pb in the seriously polluted soil (2000 mg kg(-1)).

The effect of pH on metal accumulation in two Alyssum species.

PubMed

Kukier, Urszula; Peters, Carinne A; Chaney, Rufus L; Angle, J Scott; Roseberg, Richard J

2004-01-01

Nickel phytoextraction using hyperaccumulator plants offers a potential for profit while decontaminating soils. Although soil pH is considered a key factor in metal uptake by crops, little is known about soil pH effects on metal uptake by hyperaccumulator plants. Two Ni and Co hyperaccumulators, Alyssum murale and A. corsicum, were grown in Quarry muck (Terric Haplohemist) and Welland (Typic Epiaquoll) soils contaminated by a Ni refinery in Port Colborne, Ontario, Canada, and in the serpentine Brockman soil (Typic Xerochrepts) from Oregon, USA. Soils were acidified and limed to cover pH from strongly acidic to mildly alkaline. Alyssum grown in both industrially contaminated soils exhibited increased Ni concentration in shoots as soil pH increased despite a decrease in water-soluble soil Ni, opposite to that seen with agricultural crop plants. A small decrease in Alyssum shoot Ni concentration as soil pH increased was observed in the serpentine soil. The highest fraction of total soil Ni was phytoextracted from Quarry muck (6.3%), followed by Welland (4.7%), and Brockman (0.84%). Maximum Ni phytoextraction was achieved at pH 7.3, 7.7, and 6.4 in the Quarry, Welland, and Brockman soils, respectively. Cobalt concentrations in shoots increased with soil pH increase in the Quarry muck, but decreased in the Welland soil. Plants extracted 1.71, 0.83, and 0.05% of the total soil Co from Welland, Quarry, and Brockman, respectively. The differences in uptake pattern of Ni and Co by Alyssum from different soils and pH were probably related to the differences in organic matter and iron contents of the soils.

Preliminary Studies to Characterize the Temporal Variation of Micronutrient Composition of the Above Ground Organs of Maize and Correlated Uptake Rates

PubMed Central

Martins, Karla Vilaça; Dourado-Neto, Durval; Reichardt, Klaus; de Jong van Lier, Quirijn; Favarin, José Laércio; Sartori, Felipe Fadel; Felisberto, Guilherme; Mello, Simone da Costa

2017-01-01

The improvement of agronomic practices and the use of high technology in field crops contributes for significant increases in maize productivity, and may have altered the dynamics of nutrient uptake and partition by the plant. Official recommendations for fertilizer applications to the maize crop in Brazil and in many countries are based on critical soil nutrient contents and are relatively outdated. Since the factors that interact in an agricultural production system are dynamic, mathematical modeling of the growth process turns out to be an appropriate tool for these studies. Agricultural modeling can expand our knowledge about the interactions prevailing in the soil-plant-atmosphere system. The objective of this study is to propose a methodology for characterizing the micronutrient composition of different organs and their extraction, and export during maize crop development, based on modeling nutrient uptake, crop potential evapotranspiration and micronutrient partitioning in the plant, considering the production environment. This preliminary characterization study (experimental growth analysis) considers the temporal variation of the micronutrient uptake rate in the aboveground organs, which defines crop needs and the critical nutrient content of the soil solution. The methodology allowed verifying that, initially, the highest fraction of dry matter, among aboveground organs, was assigned to the leaves. After the R1 growth stage, the largest part of dry matter was partitioned to the stalk, which in this growth stage is the main storage organ of the maize plant. During the reproductive phase, the highest fraction of dry matter was conferred to the reproductive organs, due to the high demand for carbohydrates for grain filling. The micronutrient (B, Cu, Fe, Mn, and Zn) content follows a power model, with higher values for the initial growth stages of development and leveling off to minimum values at the R6 growth stage. The proposed model allows to verify that fertilizer recommendations should be related to the temporal variability of micronutrient absorption rates, in contrast to the classic recommendation based on the critical soil micronutrient content. The maximum micronutrient absorption rates occur between the reproductive R4 and R5 growth stages. These evaluations allowed to predict the maximum micronutrient requirements, considered equal to respective stalk sap concentrations. PMID:28919900

Soil fertility controls soil-atmosphere carbon dioxide and methane fluxes in a tropical landscape converted from lowland forest to rubber and oil palm plantations

NASA Astrophysics Data System (ADS)

Hassler, E.; Corre, M. D.; Tjoa, A.; Damris, M.; Utami, S. R.; Veldkamp, E.

2015-06-01

Expansion of palm oil and rubber production, for which global demand is increasing, causes rapid deforestation in Sumatra, Indonesia and is expected to continue in the next decades. Our study aimed to (1) quantify changes in soil CO2 and CH4 fluxes with land-use change, and (2) determine their controlling factors. In Jambi Province, Sumatra, we selected two landscapes on heavily weathered soils that differ mainly in texture: loam and clay Acrisol soils. At each landscape, we investigated the reference land uses: forest and secondary forest with regenerating rubber, and the converted land uses: rubber (7-17 years old) and oil palm plantations (9-16 years old). We measured soil CO2 and CH4 fluxes monthly from December 2012 to December 2013. Annual soil CO2 fluxes from the reference land uses were correlated with soil fertility: low extractable phosphorus (P) coincided with high annual CO2 fluxes from the loam Acrisol soil that had lower fertility than the clay Acrisol soil (P < 0.05). Soil CO2 fluxes from the oil palm decreased compared to the other land uses (P < 0.01). Across land uses, annual CO2 fluxes were positively correlated with soil organic carbon (C) and negatively correlated with 15N signatures, extractable P and base saturation. This suggests that the reduced soil CO2 fluxes from oil palm was a result of strongly decomposed soil organic matter due to reduced litter input, and possible reduction in C allocation to roots due to improved soil fertility from liming and P fertilization in these plantations. Soil CH4 uptake in the reference land uses was negatively correlated with net nitrogen (N) mineralization and soil mineral N, suggesting N limitation of CH4 uptake, and positively correlated with exchangeable aluminum (Al), indicating decrease in methanotrophic activity at high Al saturation. Reduction in soil CH4 uptake in the converted land uses compared to the reference land uses (P < 0.01) was due to decrease in soil N availability in the converted land uses. Our study shows for the first time that differences in soil fertility control soil-atmosphere exchange of CO2 and CH4 in a tropical landscape, a mechanism that we were able to detect by conducting this study at the landscape scale.

Remediation of heavy metal(loid)s contaminated soils--to mobilize or to immobilize?

PubMed

Bolan, Nanthi; Kunhikrishnan, Anitha; Thangarajan, Ramya; Kumpiene, Jurate; Park, Jinhee; Makino, Tomoyuki; Kirkham, Mary Beth; Scheckel, Kirk

2014-02-15

Unlike organic contaminants, metal(loid)s do not undergo microbial or chemical degradation and persist for a long time after their introduction. Bioavailability of metal(loid)s plays a vital role in the remediation of contaminated soils. In this review, the remediation of heavy metal(loid) contaminated soils through manipulating their bioavailability using a range of soil amendments will be presented. Mobilizing amendments such as chelating and desorbing agents increase the bioavailability and mobility of metal(loid)s. Immobilizing amendments such of precipitating agents and sorbent materials decrease the bioavailabilty and mobility of metal(loid)s. Mobilizing agents can be used to enhance the removal of heavy metal(loid)s though plant uptake and soil washing. Immobilizing agents can be used to reduce the transfer to metal(loid)s to food chain via plant uptake and leaching to groundwater. One of the major limitations of mobilizing technique is susceptibility to leaching of the mobilized heavy metal(loid)s in the absence of active plant uptake. Similarly, in the case of the immobilization technique the long-term stability of the immobilized heavy metal(loid)s needs to be monitored. Copyright © 2013 Elsevier B.V. All rights reserved.

Preferences for different nitrogen forms by coexisting plant species and soil microbes.

PubMed

Harrison, Kathryn A; Bol, Roland; Bardgett, Richard D

2007-04-01

The growing awareness that plants might use a variety of nitrogen (N) forms, both organic and inorganic, has raised questions about the role of resource partitioning in plant communities. It has been proposed that coexisting plant species might be able to partition a limited N pool, thereby avoiding competition for resources, through the uptake of different chemical forms of N. In this study, we used in situ stable isotope labeling techniques to assess whether coexisting plant species of a temperate grassland (England, UK) display preferences for different chemical forms of N, including inorganic N and a range of amino acids of varying complexity. We also tested whether plants and soil microbes differ in their preference for different N forms, thereby relaxing competition for this limiting resource. We examined preferential uptake of a range of 13C15N-labeled amino acids (glycine, serine, and phenylalanine) and 15N-labeled inorganic N by coexisting grass species and soil microbes in the field. Our data show that while coexisting plant species simultaneously take up a variety of N forms, including inorganic N and amino acids, they all showed a preference for inorganic N over organic N and for simple over the more complex amino acids. Soil microbes outcompeted plants for added N after 50 hours, but in the long-term (33 days) the proportion of added 15N contained in the plant pool increased for all N forms except for phenylalanine, while the proportion in the microbial biomass declined relative to the first harvest. These findings suggest that in the longer-term plants become more effective competitors for added 15N. This might be due to microbial turnover releasing 15N back into the plant-soil system or to the mineralization and subsequent plant uptake of 15N transferred initially to the organic matter pool. We found no evidence that soil microbes preferentially utilize any of the N forms added, despite previous studies showing that microbial preferences for N forms vary over time. Our data suggest that coexisting plants can outcompete microbes for a variety of N forms, but that such plant species show similar preferences for inorganic over organic N.

Heavy Metal Uptake by Herbs. V. Metal Accumulation and Physiological Effects Induced by Thiuram in Ocimum basilicum L.

PubMed

Adamczyk-Szabela, Dorota; Romanowska-Duda, Zdzisława; Lisowska, Katarzyna; Wolf, Wojciech M

2017-01-01

Basil ( Ocimum basilicum L.) is extensively cultivated as either an important spice and food additive or a source of essential oil crucial for the production of natural phenylpropanoids and terpenoids. It is frequently attacked by fungal diseases. The aim of the study was to estimate the impact of thiuram contact time on the uptake of manganese, cobalt, nickel, copper, zinc, cadmium, and lead by Ocimum basilicum L . The relevant plant physiological parameters were also investigated. Two farmland soils typical for the Polish rural environment were used. Studies involved soil analyses, bioavailable, and total forms for all investigated metals, chlorophyll content, and gas exchange. Atomic absorption spectrometry was used to determine concentration of all elements. Analysis of variance proved hypothesis that thiuram treatment of basil significantly influences metal transfer from soil and their concentration in roots and aboveground parts. This effect is mostly visible on the 14th day after the fungicide administration. Thiuram modifies mycoflora in the rhizosphere zone and subsequently affects either metal uptake from the soil environment or their further migration within the basil plant. Notable, those changes are more evident for basil planted in mineral soil as compared to organic soil with higher buffering capacity.

Soil Organic Matter recovery on eroding alluvial surfaces on Iceland

NASA Astrophysics Data System (ADS)

Kuhn, N. J.; Würsch, M.; Hunziker, M.; Şórsson, J.

2012-04-01

Soil Erosion has been assessed to have no significant effect on greenhouse gas releases due to the balance between decomposition, burial, and uptake from the atmosphere through photosynthesis by vegetation and subsequent litter decomposition. The validity of the "zero-emission" balance of soil erosion is limited to sites where vegetation growth is not limited by soil degradation. In this study, the recovery of soil organic matter on sites subject to severe erosion and subsequent soil reclamation by the introduction of Lupinus nootkatensis is studied. Preliminary results indicate that the recovery is extremely slow (scale of decades). In particular, an incipient soil development, including the availability of freely available nitrogen, appear to limit the establishment of a closed vegetation cover. These results therefore indicate that in situations where land degradation leads to a complete destruction of the fertile soil layer, the assumption of dynamic replacement of eroded soil Carbon stocks cannot be applied.

Effect of volatile hydrocarbon fractions on mobility and earthworm uptake of polycyclic aromatic hydrocarbons from soils and soil/lampblack mixtures.

PubMed

Bogan, Bill W; Beardsley, Kate E; Sullivan, Wendy R; Hayes, Thomas D; Soni, Bhupendra K

2005-01-01

Studies were conducted to examine the mobility and bioavailability to earthworms (Eisenia fetida) of priority pollutant polycyclic aromatic hydrocarbons (PAH) in a suite of 11 soils and soil/lampblack mixtures obtained from former manufactured-gas plant sites. Contaminant mobility was assessed using XAD4 resins encapsulated in dialysis tubing, which were exposed to slurried soils for 15 d. These experiments showed that mobility of PAH in the different soils strongly correlated to the levels of volatile hydrocarbons (namely, gasoline- and diesel-range organics [GRO and DRO]) that existed in the soils as co-contaminants. Actual PAH bioavailability (as measured by earthworm PAH concentrations) also appeared to depend on GRO + DRO levels, although this was most evident at high levels of these contaminants. These findings are discussed in view of the effects of dieselrange organics on oil viscosity, assuming that the hydrocarbon contaminants in these soils exist in the form of distinct adsorbed oil phases. This study, therefore, extends correlations between carrier-oil viscosity and dissolved solute bioavailability, previously observed in a number of other in vitro and whole-organism tests (and in bacterial mutagenicity studies in soil), to multicellular organisms inhabiting contaminated-soil systems.

The leaking soil nitrogen cycle and rising atmospheric N2O: Is there anything we can do to cap the well?

USDA-ARS?s Scientific Manuscript database

Nutrient management refers to the addition and management of synthetic or organic fertilizers to soils primarily for purposes of increasing the supply of nutrients and efficiency of crop nutrient uptake in order to improve yields while minimizing environmental impact. Nitrogen (N) is generally the m...

Effects of experimental warming of air, soil and permafrost on carbon balance in Alaskan tundra

Treesearch

S.M. Natali; E.A.G. Schuur; C. Trucco; C.E. Hicks Pries; K.G. Crummer; A.F. Baron Lopez

2011-01-01

The carbon (C) storage capacity of northern latitude ecosystems may diminish as warming air temperatures increase permafrost thaw and stimulate decomposition of previously frozen soil organic C. However, warming may also enhance plant growth so that photosynthetic carbon dioxide (C02) uptake may, in part, offset respiratory losses. To determine...

Uptake and translocation of hexachlorobenzene: Oilpumpkin and sunflower

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1993-10-01

The uptake of hexachlorobenzene (HCB) and its translocation to seeds were studied with oil pumpkin and sunflower plants. Open air pot experiments were conducted with soil treated with different amounts of HCB. 14C-labelled HCB was used in solution culture experiments with young plants to investigate the distribution of HCB within the plants. During the experiments the contaminant was taken up by the root system of pumkin plant and translocated intensity to the reproductive organs. Autoradiographic pictures of crossections of stems and young fruits confirm this. Such translocation mechanism was not found in sunflower. Nevertheless it can be assumed that undermore » field conditions the uptake of vaporized HCB from contamination soil by foliage and fruits of oil pumpkin is the main pathway of contamination.« less

Carbon Balance in an Olive Orchard of SE Spain: Influence of Weed Cover

NASA Astrophysics Data System (ADS)

Sanchez-Canete, E. P.; Chamizo, S.; Serrano-Ortiz, P.; Lopez-Ballesteros, A.; Vicente-Vicente, J. L.; Kowalski, A. S.

2016-12-01

Agriculture is largely responsible for greenhouse gas emissions due to deforestation, land use changes and inadequate practices. High carbon (C) losses in agricultural lands caused by inadequate soil management entail a reduction of their C sequestration capacity and make agriculture more vulnerable to climate change impact. However, this trend can be potentially reversed if adequate agricultural practices are applied. Olive trees are one of the most widespread crops in the Mediterranean region, especially in Spain. Due to climate characteristics of the Mediterranean region and soils characterized by poor structure and low organic matter content, these crops are subject to environmental problems including erosion, soil compaction, and the loss of soil fertility that, indeed, can be aggravated by conventional practices such as intensive tillage. No-till agriculture and maintenance of the spontaneous resident vegetation cover (hereinafter, "weeds") have been applied in olive orchards in order to reduce erosion and increase soil organic C content. However, the role of these conservation practices in C balance at ecosystem scale has not been assessed so far. In this study, we analyzed the influence of weeds against weed removal via herbicide application on the net ecosystem CO2 exchange (NEE) in an olive orchard in Jaén (SE Spain), by using two eddy covariance towers during the hydrological year 2014-2015. We found that the presence of weeds increased net C uptake during winter and early spring. However, after weeds were mowed in April and kept on the soil, net C uptake decreased in this treatment due to an increase in soil respiration. Despite the lower net C uptake observed during late spring, the presence of weeds increased C fixation at annual scale. During the year of study, the weed removal practice decreased C uptake by 50% compared to the olive orchard where weeds were kept. We conclude that maintenance of weeds in olive groves has a positive effect on CO2 sequestration and enhances the capacity of this agro-system to act as a net CO2 sink.

Aluminium uptake and translocation in Al hyperaccumulator Rumex obtusifolius is affected by low-molecular-weight organic acids content and soil pH.

PubMed

Vondráčková, Stanislava; Száková, Jiřina; Drábek, Ondřej; Tejnecký, Václav; Hejcman, Michal; Müllerová, Vladimíra; Tlustoš, Pavel

2015-01-01

High Al resistance of Rumex obtusifolius together with its ability to accumulate Al has never been studied in weakly acidic conditions (pH > 5.8) and is not sufficiently described in real soil conditions. The potential elucidation of the role of organic acids in plant can explain the Al tolerance mechanism. We established a pot experiment with R. obtusifolius planted in slightly acidic and alkaline soils. For the manipulation of Al availability, both soils were untreated and treated by lime and superphosphate. We determined mobile Al concentrations in soils and concentrations of Al and organic acids in organs. Al availability correlated positively to the extraction of organic acids (citric acid < oxalic acid) in soils. Monovalent Al cations were the most abundant mobile Al forms with positive charge in soils. Liming and superphosphate application were ambiguous measures for changing Al mobility in soils. Elevated transport of total Al from belowground organs into leaves was recorded in both lime-treated soils and in superphosphate-treated alkaline soil as a result of sufficient amount of Ca available from soil solution as well as from superphosphate that can probably modify distribution of total Al in R. obtusifolius as a representative of "oxalate plants." The highest concentrations of Al and organic acids were recorded in the leaves, followed by the stem and belowground organ infusions. In alkaline soil, R. obtusifolius is an Al-hyperaccumulator with the highest concentrations of oxalate in leaves, of malate in stems, and of citrate in belowground organs. These organic acids form strong complexes with Al that can play a key role in internal Al tolerance but the used methods did not allow us to distinguish the proportion of total Al-organic complexes to the free organic acids.

Effect of carbonate soil on transport and dose estimates from long-lived radionuclides at U. S. Pacific Test Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conrado, C.L.; Hamilton, T.F.; Robison, W.L.

1998-09-01

The United States conducted a series of nuclear tests from 1946 to 1958 at Bikini, a coral atoll, in the Marshall Islands (MI). The aquatic and terrestrial environments of the atoll are still contaminated with several long-lived radionuclides that were generated during testing. The four major radionuclides found in terrestrial plants and soils are Cesium-137 ({sup 137} Cs), Strontium-90 ({sup 90} Sr), Plutonium-239+ 240 ({sup 239+240}Pu) and Americium-241 ({sup 241}Am). {sup 137}Cs in the coral soils is more available for uptake by plants than {sup 137}Cs associated with continental soils of North America or Europe. Soil-to-plant {sup 137}Cs median concentrationmore » ratios (CR) (kBq kg{sup {minus}1} dry weight plant/kBq kg {sup {minus}1} dry weight soil) for tropical fruits and vegetables range between 0.8 and 36, much larger than the range of 0.005 to 0.5 reported for vegetation in temperate zones. Conversely, {sup 90}Sr median CRs range from 0.006 to 1.0 at the atoll versus a range from 0.02 to 3.0 for continental silica-based soils. Thus, the relative uptake of {sup 137}Cs and {sup 90}Sr by plants in carbonate soils is reversed from that observed in silica-based soils. The CRs for {sup 239+240}Pu and {sup 241}Am are very similar to those observed in continental soils. Values range from 10{sup {minus}6} to 10{sup {minus}4} for both {sup 239+240}Pu and {sup 241}Am. No significant difference is observed between the two in coral soil. The uptake of {sup 137}Cs by plants is enhanced because of the absence of mineral binding sites and the low concentration of potassium in the coral soil. {sup 137}Cs is bound to the organic fraction of the soil, whereas {sup 90}Sr, {sup 239+240}Pu and {sup 241}Am are primarily bound to soil particles. Assessment of plant uptake for {sup 137}Cs and {sup 90}Sr into locally grown food crops was a major contributing factor in (1) reliably predicting the radiological dose for returning residents, and (2) developing a strategy to limit the availability and uptake of {sup 137}Cs into locally g« less

Nutrient uptake by agricultural crops from biochar-amended soils: results from two field experiments in Austria

NASA Astrophysics Data System (ADS)

Karer, Jasmin; Zehetner, Franz; Kloss, Stefanie; Wimmer, Bernhard; Soja, Gerhard

2013-04-01

The use of biochar as soil amendment is considered as a promising agricultural soil management technique, combining carbon sequestration and soil fertility improvements. These expectations are largely founded on positive experiences with biochar applications to impoverished or degraded tropical soils. The validity of these results for soils in temperate climates needs confirmation from field experiments with typical soils representative for intensive agricultural production areas. Frequently biochar is mixed with other organic additives like compost. As these two materials interact with each other and each one may vary considerably in its basic characteristics, it is difficult to attribute the effects of the combined additive to one of its components and to a specific physico-chemical parameter. Therefore investigations of the amendment efficacy require the study of the pure components to characterize their specific behavior in soil. This is especially important for adsorption behavior of biochar for macro- and micronutrients because in soil there are multiple nutrient sinks that compete with plant roots for vital elements. Therefore this contribution presents results from a field amendment study with pure biochar that had the objective to characterize the macro- and microelement uptake of crops from different soils in two typical Austrian areas of agricultural production. At two locations in North and South-East Austria, two identical field experiments on different soils (Chernozem and Cambisol) were installed in 2011 with varying biochar additions (0, 30 and 90 t/ha) and two nitrogen levels. The biochar was a product from slow pyrolysis of wood (SC Romchar SRL). During the installation of the experiments, the biochar fraction of <2 mm was mixed with surface soil to a depth of 15 cm in plots of 33 m2 each (n=4). Barley (at the Chernozem soil) and maize (at the Cambisol) were cultivated according to standard agricultural practices. The highest crop yields at both study sites were observed after a biochar application rate of 90 t/ha and an abundant nitrogen supply (mineral N fertilizer rates: 120 kg/ha for barley, 150 kg/ha for corn). An omission of biochar addition at the same nitrogen addition rate resulted in a yield decrease of 10 % for barley although the total N uptake was 11 % higher but P and K uptake decreased by 14 and 6 %. This indicates that the higher yields with biochar were accompanied by increased availability of P and K but not N. The N deficiency treatment (with biochar amendment) resulted in yield decreases of 23 %, which were similar as the reductions of N uptake while reductions of P and K uptake were less pronounced. For corn, the omission of biochar caused only marginal yield effects (6%) and no significant changes in the N, P, and K uptake rates. Deficient N supply, however, resulted in severe yield reductions (46%) in spite of the high biochar application rate. The reductions of macronutrient uptake were in the same range for N (44%) but lower for P, K, Ca and Mg (19 to 33%). In summary, N and Cu were the elements that were least available for plant uptake at high biochar application rates.

Phytoextraction of Pb and Cd from a superfund soil: effects of amendments and croppings.

PubMed

Bricker, T J; Pichtel, J; Brown, H J; Simmons, M

2001-01-01

In a growth chamber, maize (Zea mays) and Indian mustard (Brassica juncea) were grown over two croppings in soil from a Superfund site (PbTotal = 65,200 mg/kg and CdTotal = 52mg/kg). Soil treatments consisted of ethylenediaminetetraacetic acid, sodium citrate and composted sewage sludge, each at two rates (EDTA .05%, EDTA .2%, citrate .05%, citrate .2%, CSS 5% and CSS 10%, respectively). In most cases, the EDTA and citrate treatments were superior in terms of solubilizing soil Pb for root uptake and translocation into above-ground biomass. In the first maize crop, the EDTA .2% treatment resulted in 2,435 and 9,389mg/kg Pb in shoot and root tissues, respectively. The CSS treatments typically resulted in lowest Pb and Cd removal efficiencies. Lead remaining in the soil after two croppings was mainly associated with the carbonate, organic, and residual fractions, which represent the less bioavailable forms. Soil Cd was generally more mobile for plant uptake than soil Pb. The EDTA .2% and citrate treatments were most successful in promoting Cd uptake by both maize and mustard. Although Pb concentrations (mg/kg tissue) were lower for maize than mustard, the former removed more total Pb (0.2 mg per pot, mean over all treatments), compared to mustard (0.03 mg), by virtue of its higher biomass production.

Arbuscular mycorrhizal fungal hyphae contribute to the uptake of polycyclic aromatic hydrocarbons by plant roots.

PubMed

Gao, Yanzheng; Cheng, Zhaoxia; Ling, Wanting; Huang, Jing

2010-09-01

The arbuscular mycorrhizal (AM) hyphae-mediated uptake of polycyclic aromatic hydrocarbons (PAHs) by the roots of ryegrass (Lolium multiflorum Lam.) was investigated using three-compartment systems. Glomus mosseae and Glomus etunicatum were chosen, and fluorene and phenanthrene were used as representative PAHs. When roots were grown in un-spiked soils, AM hyphae extended into PAH-spiked soil and clearly absorbed and transported PAHs to roots, resulting in high concentrations of fluorene and phenanthrene in roots. This was further confirmed by the batch equilibration experiment, which revealed that the partition coefficients (K(d)) of tested PAHs by mycorrhizal hyphae were 270-356% greater than those by roots, suggesting the great potential of hyphae to absorb PAHs. Because of fluorene's lower molecular weight and higher water solubility, its translocation by hyphae was greater than that of phenanthrene. These results provide new perspectives on the AM hyphae-mediated uptake by plants of organic contaminants from soil. Copyright 2010 Elsevier Ltd. All rights reserved.

Effects of cadmium amendments on low-molecular-weight organic acid exudates in rhizosphere soils of tobacco and sunflower.

PubMed

Chiang, Po-Neng; Wang, Ming Kuang; Chiu, Chih Yu; Chou, Shu-Yen

2006-10-01

To recognize physiological response of plants to cadmium (Cd) toxicity in rhizosphere of plants, the pot experiments were employed to investigate how low-molecular-weight organic acids (LMWOAs) were exudated from tobacco and sunflower roots of Cd-amended soils. The aims of this study were to assess the effect of LMWOAs on uptake of Cd by tobacco and sunflower under pot experiments, thus comparing the ability of tobacco and sunflower for phytoremediation. Surface soils (0-20 cm) were collected from Taichung Experiment Station (TC) (silty loam). Cadmium chloride (CdCl(2)) was amended into TC soil, giving Cd concentrations of 1, 5, 10 mg kg(-1) soil. Soils with different concentrations of Cd were put into 12 cm (i.d.) pots for incubation, and then 2-week-old tobacco and sunflower seedlings were transplanted into the pots. Tobacco and sunflower were grown in greenhouse for 50 days, respectively. The rhizosphere and bulk soils, and fresh plant tissues were collected after harvest. The Cd concentrations in the plant and transfer factor values in the sunflower were higher than that in the tobacco. No LMWOAs were detected by gas chromatograph in bulk soils, and low amounts of LMWOAs were found in uncontaminated rhizosphere soils. Acetic, lactic, glycolic, malic, maleic, and succinic acids were found in the tobacco and sunflower rhizosphere soils. Concentrations of LMWOAs increased with increasing amendment of Cd concentrations in tobacco and sunflower rhizosphere soils. Correlation coefficient (r) of concentrations of Cd amendment versus LMWOAs exudates of tobacco and sunflower were 0.85 and 0.98, respectively. These results suggest that the different levels of LMWOAs present in the rhizosphere soil play an important role in the solubilization of Cd that bound with soil particle into soil solution and then uptake by plants.

Phosphate Uptake from Phytate Due to Hyphae-Mediated Phytase Activity by Arbuscular Mycorrhizal Maize.

PubMed

Wang, Xin-Xin; Hoffland, Ellis; Feng, Gu; Kuyper, Thomas W

2017-01-01

Phytate is the most abundant form of soil organic phosphorus (P). Increased P nutrition of arbuscular mycorrhizal plants derived from phytate has been repeatedly reported. Earlier studies assessed acid phosphatase rather than phytase as an indication of mycorrhizal fungi-mediated phytate use. We investigated the effect of mycorrhizal hyphae-mediated phytase activity on P uptake by maize. Two maize ( Zea mays L.) cultivars, non-inoculated or inoculated with the arbuscular mycorrhizal fungi Funneliformis mosseae or Claroideoglomus etunicatum , were grown for 45 days in two-compartment rhizoboxes, containing a root compartment and a hyphal compartment. The soil in the hyphal compartment was supplemented with 20, 100, and 200 mg P kg -1 soil as calcium phytate. We measured activity of phytase and acid phosphatase in the hyphal compartment, hyphal length density, P uptake, and plant biomass. Our results showed: (1) phytate addition increased phytase and acid phosphatase activity, and resulted in larger P uptake and plant biomass; (2) increases in P uptake and biomass were correlated with phytase activity but not with acid phosphatase activity; (3) lower phytate addition rate increased, but higher addition rate decreased hyphal length density. We conclude that P from phytate can be taken up by arbuscular mycorrhizal plants and that phytase plays a more important role in mineralizing phytate than acid phosphatase.

Effect of Various Organic Matter stimulates Bacteria and Arbuscular Mycorrhizal Fungi Plantations on Eroded Slopes in Nepal

NASA Astrophysics Data System (ADS)

Shrestha Vaidya, G.; Shrestha, K.; Wallander, H.

2009-04-01

Erosion resulting from landslides is a serious problem in mountainous countries such as Nepal. To restore such sites it is essential to establish plant cover that protects the soil and reduces erosion. Trees and shrubs on the lower hillsides in Nepal form symbiosis with arbuscular mycorrhizal (AM) fungi and these fungi are important for the uptake of mineral nutrients from the soil. In addition, the mycelia formed by these fungi have an important function in stabilizing the soil. The success of plantations of these eroded slopes is therefore highly dependent on the extent of mycorrhizal colonization of the plants. Mycorrhizal fungi growing in symbiosis with plants are essential in this respect because they improve both plant and nutrient uptake and soil structure. We investigated the influence of organic matter and P amendment on recently produced biomass of bacteria and arbuscular mycorrhizal (AM) fungi in eroded slopes in Nepal. Eroded soil mixed with different types of organic matter was placed in mesh bags which were buried around the trees of Bauhinia purpurea and Leucaena diversifolia .This experiment were done in two seasons ( (the wet and the dry season). Signature fatty acids were used to determine bacterial and AM fungal biomass after the six month intervals. The amount and composition of AM fungal spores were analyzed in the mesh bags from the wet and dry seasons. More microbial biomass was produced during wet season than during dry season. Further more, organic matter addition enhanced the production of AM fungal and bacterial biomass during both seasons. The positive influence of organic matter addition on AM fungi could be an important contribution to plant survival, growth and nutrient composition in the soil in plantations on eroded slopes. Different AM spore communities and bacterial profiles were obtained with different organic amendments and this suggests a possible way of selecting for specific microbial communities in the management of eroded sites.

Phosphorus cycles of forest and upland grassland ecosystems and some effects of land management practices.

PubMed

Harrison, A F

The distribution of phosphorus capital and net annual transfers of phosphorus between the major components of two unfertilized phosphorus-deficient UK ecosystems, an oak--ash woodland in the Lake District and an Agrostis-Festuca grassland in Snowdonia (both on acid brown-earth soils), have been estimted in terms of kg P ha--1. In both ecosystems less than 3% of the phosphorus, totalling 1890 kg P ha--1 and 3040 kg P ha--1 for the woodland and grassland, respectively, is contained in the living biomass and half that is below ground level. Nearly all the phosphorus is in the soil matrix. Although the biomass phosphorus is mostly in the vegetation, the soil fauna and vegetation is slower (25%) than in the grassland vegetatation (208%). More than 85% of the net annual vegetation uptake of phosphorus from the soil is returned to the soil, mainly in organic debris, which in the grassland ecosystem is more than twice as rich in phosphorus (0.125% P) as in the woodland ecosystem (0.053% P). These concentrations are related to the rates of turnover (input/P content) of phosphorus in the litter layer on the soil surface; it is faster in the grassland (460%) than in the woodland (144%). In both cycles plant uptake of phosphorus largely depends on the release of phosphorus through decomposition of the organic matter returned to soil. In both the woodland and the grassland, the amount of cycling phosphorus is potentially reduced by its immobilization in tree and sheep production and in undecomposed organic matter accumulating in soil. It is assumed that the reductions are counterbalanced by the replenishment of cycling phosphorus by (i) some mineralization of organically bound phosphorus in the mineral soil, (ii) the income in rainfall and aerosols not being effectively lost in soil drainage waters and (iii) rock weathering. The effects of the growth of conifers and sheep grazing on the balance between decomposition and accumulation of organic matter returned to soil are considered in relation to the rate of phosphorus cycling and the pedogenetic changes in soil phosphorus condition leading to reduced fertility. Although controlled sheep grazing speeds up phosphorus cycling and may reverse the pedogenetic trend in favour of soil improvement, conifers may slow down phosphorus cycling and promote the pedogenetic trend towards infertility.

Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank

PubMed Central

Leite, Márcio F. A.; Pan, Yao; Bloem, Jaap; Berge, Hein ten; Kuramae, Eiko E.

2017-01-01

Use of organic amendments is a valuable strategy for crop production. However, it remains unclear how organic amendments shape both soil microbial community structure and activity, and how these changes impact nutrient mineralization rates. We evaluated the effect of various organic amendments, which range in Carbon/Nitrogen (C/N) ratio and degradability, on the soil microbiome in a mesocosm study at 32, 69 and 132 days. Soil samples were collected to determine community structure (assessed by 16S and 18S rRNA gene sequences), microbial biomass (fungi and bacteria), microbial activity (leucine incorporation and active hyphal length), and carbon and nitrogen mineralization rates. We considered the microbial soil DNA as the microbial seedbank. High C/N ratio favored fungal presence, while low C/N favored dominance of bacterial populations. Our results suggest that organic amendments shape the soil microbial community structure through a feedback mechanism by which microbial activity responds to changing organic inputs and rearranges composition of the microbial seedbank. We hypothesize that the microbial seedbank composition responds to changing organic inputs according to the resistance and resilience of individual species, while changes in microbial activity may result in increases or decreases in availability of various soil nutrients that affect plant nutrient uptake. PMID:28198425

Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank.

PubMed

Leite, Márcio F A; Pan, Yao; Bloem, Jaap; Berge, Hein Ten; Kuramae, Eiko E

2017-02-15

Use of organic amendments is a valuable strategy for crop production. However, it remains unclear how organic amendments shape both soil microbial community structure and activity, and how these changes impact nutrient mineralization rates. We evaluated the effect of various organic amendments, which range in Carbon/Nitrogen (C/N) ratio and degradability, on the soil microbiome in a mesocosm study at 32, 69 and 132 days. Soil samples were collected to determine community structure (assessed by 16S and 18S rRNA gene sequences), microbial biomass (fungi and bacteria), microbial activity (leucine incorporation and active hyphal length), and carbon and nitrogen mineralization rates. We considered the microbial soil DNA as the microbial seedbank. High C/N ratio favored fungal presence, while low C/N favored dominance of bacterial populations. Our results suggest that organic amendments shape the soil microbial community structure through a feedback mechanism by which microbial activity responds to changing organic inputs and rearranges composition of the microbial seedbank. We hypothesize that the microbial seedbank composition responds to changing organic inputs according to the resistance and resilience of individual species, while changes in microbial activity may result in increases or decreases in availability of various soil nutrients that affect plant nutrient uptake.

Exploring the microbially-mediated soil H2 sink: A lab-based study of the physiology and related H2 consumption of isolates from the Harvard Forest

NASA Astrophysics Data System (ADS)

Rao, D.; Meredith, L. K.; Bosak, T.; Hansel, C. M.; Ono, S.; Prinn, R. G.

2012-12-01

Atmospheric hydrogen (H2) is a secondary greenhouse gas because it attenuates the removal of methane (CH4) from the atmosphere. The largest and most uncertain term in the H2 biogeochemical cycle, microbe-mediated soil uptake, is responsible for about 80% of Earth's tropospheric H2 sink. Recently, the first H2-oxidizing soil microorganisms were discovered (genus Streptomyces) whose low-threshold, high-affinity NiFe-hydrogenase functions at ambient H2 levels (approx. 530 ppb). To better understand the ecological function of this hydrogenase, we conducted a controlled laboratory study of the H2 uptake behavior in accordance with the complex life cycle development of the streptomycetes. Several strains of the genus Streptomyces containing a high-affinity NiFe- hydrogenase were isolated from soil at the Harvard Forest. The presence of this hydrogenase, detected by PCR amplification of the hydrogenase large subunit, predicted H2 uptake behavior in wild-type streptomycetes and in phylogenetically different organisms containing more distantly related versions of the gene. H2 uptake depended on the streptomyces' life cycle, reaching a maximum during spore formation. These findings reveal connections between environmental conditions, organismal life cycle, and H2 uptake. With the rise of H2-based energy sources and a potential change in the tropospheric concentration of H2, understanding the sources and sinks of this trace gas is important for the future.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moore, J. A. M.; Jiang, J.; Post, W. M.

Carbon cycle models often lack explicit belowground organism activity, yet belowground organisms regulate carbon storage and release in soil. Ectomycorrhizal fungi are important players in the carbon cycle because they are a conduit into soil for carbon assimilated by the plant. It is hypothesized that ectomycorrhizal fungi can also be active decomposers when plant carbon allocation to fungi is low. Here, we reviewed the literature on ectomycorrhizal decomposition and we developed a simulation model of the plant-mycorrhizae interaction where a reduction in plant productivity stimulates ectomycorrhizal fungi to decompose soil organic matter. Our review highlights evidence demonstrating the potential formore » ectomycorrhizal fungi to decompose soil organic matter. Our model output suggests that ectomycorrhizal activity accounts for a portion of carbon decomposed in soil, but this portion varied with plant productivity and the mycorrhizal carbon uptake strategy simulated. Lower organic matter inputs to soil were largely responsible for reduced soil carbon storage. Using mathematical theory, we demonstrated that biotic interactions affect predictions of ecosystem functions. Specifically, we developed a simple function to model the mycorrhizal switch in function from plant symbiont to decomposer. In conclusion, we show that including mycorrhizal fungi with the flexibility of mutualistic and saprotrophic lifestyles alters predictions of ecosystem function.« less

Cluster Roots of Leucadendron laureolum (Proteaceae) and Lupinus albus (Fabaceae) Take Up Glycine Intact: An Adaptive Strategy to Low Mineral Nitrogen in Soils?

PubMed Central

HAWKINS, HEIDI-JAYNE; WOLF, GABRIELLE; STOCK, WILLIAM DAVID

2005-01-01

• Background and Aims South African soils are not only low in phosphorus (P) but most nitrogen (N) is in organic form, and soil amino acid concentrations can reach 2·6 g kg−1 soil. The Proteaceae (a main component of the South African Fynbos vegetation) and some Fabaceae produce cluster roots in response to low soil phosphorus. The ability of these roots to acquire the amino acid glycine (Gly) was assessed. • Methods Uptake of organic N as 13C–15N-Gly was determined in cluster roots and non-cluster roots of Leucadendron laureolum (Proteaceae) and Lupinus albus (Fabaceae) in hydroponic culture, taking account of respiratory loss of 13CO2. • Key Results Both plant species acquired doubly labelled (intact) Gly, and respiratory losses of 13CO2 were small. Lupin (but not leucadendron) acquired more intact Gly when cluster roots were supplied with 13C–15N-Gly than when non-cluster roots were supplied. After treatment with labelled Gly (13C : 15N ratio = 1), lupin cluster roots had a 13C : 15N ratio of about 0·85 compared with 0·59 in labelled non-cluster roots. Rates of uptake of label from Gly did not differ between cluster and non-cluster roots of either species. The ratio of C : N and 13C : 15N in the plant increased in the order: labelled roots < rest of the root < shoot in both species, owing to an increasing proportion of 13C translocation. • Conclusions Cluster roots of lupin specifically acquired more intact Gly than non-cluster roots, whereas Gly uptake by the cluster and non-cluster roots of leucadendron was comparable. The uptake capacities of cluster roots are discussed in relation to spatial and morphological characteristics in the natural environment. PMID:16223736

Effectiveness of urea in enhancing the extractability of 2,4,6-trinitrotoluene from chemically variant soils.

PubMed

Das, Padmini; Sarkar, Dibyendu; Makris, Konstantinos C; Punamiya, Pravin; Datta, Rupali

2013-11-01

One of the major challenges in developing an effective phytoremediation technology for 2,4,6-trinitrotoluene (TNT) contaminated soils is limited plant uptake resulting from low solubility of TNT. The effectiveness of urea as a solubilizing agent in increasing plant uptake of TNT in hydroponic systems has been documented. Our preliminary greenhouse experiments using urea were also very promising, but further characterization of the performance of urea in highly-complex soil-solution was necessary. The present study investigated the natural retention capacity of four chemically variant soils and optimized the factors influencing the effectiveness of urea in enhancing TNT solubility in the soil solutions. Results show that the extent of TNT sorption and desorption varies with the soil properties, and is mainly dependent on soil organic matter (SOM) content. Hysteretic desorption of TNT in all tested soils suggests irreversible sorption of TNT and indicates the need of using an extractant to increase the release of TNT in soil solutions. Urea significantly (p<0.0001) enhanced TNT extraction from all soils, by increasing its solubility at the solid/liquid interface. Soil organic matter content and urea application rates showed significant effects, whereas pH did not exert any significant effect on urea catalysis of TNT extraction from soil. The optimum urea application rates (125 or 350 mg kg(-1)) for maximizing TNT extraction were within the limits set by the agronomic fertilizer-N rates used for major agricultural crops. The data obtained from this batch study will facilitate the optimization of a chemically-catalyzed phytoremediation model for cleaning up TNT-contaminated soils. Copyright © 2013 Elsevier Ltd. All rights reserved.

Predicting potentially plant-available lead in contaminated residential sites.

PubMed

Andra, Syam S; Sarkar, Dibyendu; Saminathan, Sumathi K M; Datta, Rupali

2011-04-01

Lead (Pb)-based paints pose a serious health problem to people living in residential settings constructed prior to 1978. Children are at a greater risk to Pb exposure resulting from hand-to-mouth activity in Pb-contaminated residential soils. For soil Pb, the most environmentally friendly, potentially cheap, and visually unobtrusive in situ technology is phytoremediation. However, the limiting factor in a successful phytoremediation strategy is the availability of Pb for plant uptake. The purpose of this study was to establish a relationship between soil properties and the plant-available/exchangeable Pb fraction in the selected Pb-based paint-contaminated residential sites. We selected 20 such sites from two different locations (San Antonio, Texas and Baltimore, Maryland) with varying soil properties and total soil Pb concentrations ranging between 256 and 4,182 mg kg(-1). Despite higher Pb levels in these soils that exceeds US EPA permissible limit of 400 mg kg(-1), it is known that the plant-available Pb pools are significantly lower because of their sorption to soil components such as organic matter, Fe-Mn oxides, and clays, and their precipitation in the form of carbonates, hydroxides, and phosphates. Principal component analysis and hierarchical clustering showed that the potentially plant-available Pb fraction is controlled by soil pH in the case of acidic Baltimore soils, while soil organic matter plays a major role in alkaline San Antonio soils. Statistical models developed suggest that Pb is likely to be more available for plant uptake in Baltimore soils and a chelant-assisted phytoextraction strategy will be potentially necessary for San Antonio soils in mobilizing Pb from complexed pool to the plant-available pool. A thorough knowledge of site-specific factors is therefore essential in developing a suitable and successful phytoremediation model.

Effect of surfactant amendment to PAHs-contaminated soil for phytoremediation by maize (Zea mays L.).

PubMed

Liao, Changjun; Liang, Xujun; Lu, Guining; Thai, Truonggiang; Xu, Wending; Dang, Zhi

2015-02-01

Understanding the uptake of organic pollutants by plants is an important part of the assessment of risks from crops grown on contaminated soils. This study was an investigation of the effects of surfactants added to PAHs-contaminated soil on the uptake and accumulation of PAHs in maize tissues during phytoremediation. The accumulation of phenanthrene (PHE) and pyrene (PYR) by maize plant was not influenced significantly by the surfactant amendment to the soil. The distribution of PHE and PYR in maize tissues was not positively correlated with the corresponding lipid contents. Remarkably, the concentrations of PHE (20.9 ng g(-1)) and PYR (0.9 ng g(-1)) in maize grain were similar to or even much lower than those in some foods. Moreover, surfactants could enhance the removal of pollutants from contaminated soil during phytoremediation, which might be due to surfactant desorption ability and microbial activity in soil. The study suggests that use of maize plant with surfactant is an alternative technology for remediation of PAHs-contaminated soils. Copyright © 2014 Elsevier Inc. All rights reserved.

Effect of grazing on methane uptake from Eurasian steppe of China.

PubMed

Tang, Shiming; Zhang, Yujuan; Zhai, Xiajie; Wilkes, Andreas; Wang, Chengjie; Wang, Kun

2018-03-20

The effects of grazing on soil methane (CH 4 ) uptake in steppe ecosystems are important for understanding carbon sequestration and cycling because the role of grassland soil for CH 4 uptake can have major impacts at the global level. Here, a meta-analysis of 27 individual studies was carried out to assess the response patterns of soil CH 4 uptake to grazing in steppe ecosystems of China. The weighted log response ratio was used to assess the effect size. We found that heavy grazing significantly depressed soil CH 4 uptake by 36.47%, but light and moderate grazing had no significant effects in grassland ecosystem. The response of grassland soil CH 4 uptake to grazing also was found to depend upon grazing intensity, grazing duration and climatic types. The increase in soil temperature and reduced aboveground biomass and soil moisture induced by heavy grazing may be the major regulators of the soil CH 4 uptake. These findings imply that grazing effects on soil CH 4 uptake are highly context-specific and that grazing in different grasslands might be managed differently to help mitigate greenhouse gas emissions.

Effects of sewage sludge on Di-(2-ethylhexyl) phthalate uptake by plants. [Lactuca sativa L. ; Daucus carota L. ; Capsicum annuum L. ; Festuca arundinacea Schreb

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aranda, J.M.; O'Connor, G.A.; Eiceman, G.A.

Di-(2-ethylhexyl) phthalate (DEHP) is a priority organic pollutant frequently found in municipal sludges. A greenhouse study was conducted to determine the effect of sludge on plant uptake of {sup 14}C-DEHP (carbonyl labeled). Plants grown included three food chain crops, lettuce (Lactuca sativa L.), carrot (Daucus carota L.) and chile pepper (Capsicum annuum L.) and tall fescue (Festuca arundinacea Schreb.). Net {sup 14}C concentration in plants grown in soil amended with {sup 14}C-DEHP-contaminated sludge was independent of sludge rate (at the same DEHP loading) for lettuce, chile fruit, and carrot roots. Net {sup 14}C concentration, however, was inversely related to sludgemore » rate in carrot tops, fescue, and chile plants. Intact DEHP was not detected in plants by gas chromatography/mass spectrometry analysis. Calculated plant DEHP concentrations (based on measured net {sup 14}C concentrations and DEHP specific activities) were generally correlated better with DEHP soil solution concentrations than with total DEHP soil concentrations. Net {sup 14}C-DEHP bioconcentration factors were calculated from initial soil DEHP concentration and plant fresh weights. Bioconcentration factors ranged from 0.01 to 0.03 for fescue, lettuce, carrots, and chile, suggesting little DEHP uptake. Additionally, because intact DEHP was not detected in any plants, DEHP uptake by plants was of minor importance and would not limit sludge additions to soils used to grow these crops.« less

Uptake of gaseous formaldehyde by soil surfaces: a combination of adsorption/desorption equilibrium and chemical reactions

NASA Astrophysics Data System (ADS)

Li, Guo; Su, Hang; Li, Xin; Kuhn, Uwe; Meusel, Hannah; Hoffmann, Thorsten; Ammann, Markus; Pöschl, Ulrich; Shao, Min; Cheng, Yafang

2016-08-01

Gaseous formaldehyde (HCHO) is an important precursor of OH radicals and a key intermediate molecule in the oxidation of atmospheric volatile organic compounds (VOCs). Budget analyses reveal large discrepancies between modeled and observed HCHO concentrations in the atmosphere. Here, we investigate the interactions of gaseous HCHO with soil surfaces through coated-wall flow tube experiments applying atmospherically relevant HCHO concentrations of ˜ 10 to 40 ppbv. For the determination of uptake coefficients (γ), we provide a Matlab code to account for the diffusion correction under laminar flow conditions. Under dry conditions (relative humidity = 0 %), an initial γ of (1.1 ± 0.05) × 10-4 is determined, which gradually drops to (5.5 ± 0.4) × 10-5 after 8 h experiments. Experiments under wet conditions show a smaller γ that drops faster over time until reaching a plateau. The drop of γ with increasing relative humidity as well as the drop over time can be explained by the adsorption theory in which high surface coverage leads to a reduced uptake rate. The fact that γ stabilizes at a non-zero plateau suggests the involvement of irreversible chemical reactions. Further back-flushing experiments show that two-thirds of the adsorbed HCHO can be re-emitted into the gas phase while the residual is retained by the soil. This partial reversibility confirms that HCHO uptake by soil is a complex process involving both adsorption/desorption and chemical reactions which must be considered in trace gas exchange (emission or deposition) at the atmosphere-soil interface. Our results suggest that soil and soil-derived airborne particles can either act as a source or a sink for HCHO, depending on ambient conditions and HCHO concentrations.

Carbon sequestration through urban ecosystem services: A case study from Finland.

PubMed

Kuittinen, Matti; Moinel, Caroline; Adalgeirsdottir, Kristjana

2016-09-01

Plants and soil are natural regulators of atmospheric CO2. Whereas plants sequester atmospheric carbon, soils deposit it for decades. As cities become increasingly more densely built, the available land area for such ecosystem services may decrease. We studied seven different housing areas in the Finnish city of Espoo to ascertain the extent to which site efficiency affects to the ecosystem services if the full life-cycle GHG emissions of these areas are taken into account. The results show that the impact of CO2 uptake through carbon sinks in growing plants and the uptake of soil organic carbon vary greatly. Its share of all emissions varied from a marginal value of 1.2% to a more considerable value of 11.9%. The highest potential was calculated for a detached house located on a large site, while the weakest was calculated for compact apartment blocks. The study revealed that in order to quantify this potential more accurately, several knowledge gaps must first be addressed. These include impartial growth algorithms for Nordic wood species, missing accumulation factors for soil organic carbon in cold climates and statistical maintenance scenarios for gardens. Copyright © 2016 Elsevier B.V. All rights reserved.

Role of curli and contamination level on Escherichia coli O157:H7 internalization into organic spinach plants grown on hydroponics and in soil

USDA-ARS?s Scientific Manuscript database

Introduction: E. coli O157:H7 may be internalized into organic leafy greens via root uptake. Understanding the mechanisms of E. coli O157:H7 internalization into organic leafy greens is important as produce wash treatment may not remove internalized pathogens. Purpose: The internalization potential...

Recycling of organic wastes in burnt soils: combined application of poultry manure and plant cultivation.

PubMed

Villar, M C; Petrikova, V; Díaz-Raviña, M; Carballas, T

2004-01-01

A pot experiment was conducted to investigate the efficacy of a post-fire land management practice, including plant cultivation (Lolium perenne) combined with poultry manure addition, for restoring the protective vegetation cover in soils degraded by high intensity wildfires. The greenhouse experiment was performed with three burnt pine forest soils with added poultry manure at two doses of application and comparing the data with those obtained using NPK fertilizer. A significant effect of the amendment, soil properties and the interaction between amendment and soil properties on vegetation cover (phytomass production, nutrient content) was detected, but often the amendment treatment explained most of the variance. Changes induced by the organic amendment were more marked than those induced by inorganic fertilization. The increase of phytomass and nutrient uptake with poultry manure addition indicated the beneficial effects of this soil management practice. These findings can serve to develop field experiments and burnt soils reclamation technology.

Organic and inorganic nitrogen uptake by 21 dominant tree species in temperate and tropical forests.

PubMed

Liu, Min; Li, Changcheng; Xu, Xingliang; Wanek, Wolfgang; Jiang, Ning; Wang, Huimin; Yang, Xiaodong

2017-11-01

Evidence shows that many tree species can take up organic nitrogen (N) in the form of free amino acids from soils, but few studies have been conducted to compare organic and inorganic N uptake patterns in temperate and tropical tree species in relation to mycorrhizal status and successional state. We labeled intact tree roots by brief 15N exposures using field hydroponic experiments in a temperate forest and a tropical forest in China. A total of 21 dominant tree species were investigated, 8 in the temperate forest and 13 in the tropical forest. All investigated tree species showed highest uptake rates for NH4+ (ammonium), followed by glycine and NO3- (nitrate). Uptake of NH4+ by temperate trees averaged 12.8 μg N g-1 dry weight (d.w.) root h-1, while those by tropical trees averaged 6.8 μg N g-1 d.w. root h-1. Glycine uptake rates averaged 3.1 μg N g-1 d.w. root h-1 for temperate trees and 2.4 μg N g-1 d.w. root h-1 for tropical trees. NO3- uptake was the lowest (averaging 0.8 μg N g-1 d.w. root h-1 for temperate trees and 1.2 μg N g-1 d.w. root h-1 for tropical trees). Uptake of NH4+ accounted for 76% of the total uptake of all three N forms in the temperate forest and 64% in the tropical forest. Temperate tree species had similar glycine uptake rates as tropical trees, with the contribution being slightly lower (20% in the temperate forest and 23% in the tropical forest). All tree species investigated in the temperate forest were ectomycorrhizal and all species but one in the tropical forest were arbuscular mycorrhizal (AM). Ectomycorrhizal trees showed significantly higher NH4+ and lower NO3- uptake rates than AM trees. Mycorrhizal colonization rates significantly affected uptake rates and contributions of NO3- or NH4+, but depended on forest types. We conclude that tree species in both temperate and tropical forests preferred to take up NH4+, with organic N as the second most important N source. These findings suggest that temperate and tropical forests demonstrate similar N uptake patterns although they differ in physiology of trees and soil biogeochemical processes. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Role of organic amendments on enhanced bioremediation of heavy metal(loid) contaminated soils.

PubMed

Park, Jin Hee; Lamb, Dane; Paneerselvam, Periyasamy; Choppala, Girish; Bolan, Nanthi; Chung, Jae-Woo

2011-01-30

As land application becomes one of the important waste utilization and disposal practices, soil is increasingly being seen as a major source of metal(loid)s reaching food chain, mainly through plant uptake and animal transfer. With greater public awareness of the implications of contaminated soils on human and animal health there has been increasing interest in developing technologies to remediate contaminated sites. Bioremediation is a natural process which relies on soil microorganisms and higher plants to alter metal(loid) bioavailability and can be enhanced by addition of organic amendments to soils. Large quantities of organic amendments, such as manure compost, biosolid and municipal solid wastes are used as a source of nutrients and also as a conditioner to improve the physical properties and fertility of soils. These organic amendments that are low in metal(loid)s can be used as a sink for reducing the bioavailability of metal(loid)s in contaminated soils and sediments through their effect on the adsorption, complexation, reduction and volatilization of metal(loid)s. This review examines the mechanisms for the enhanced bioremediation of metal(loid)s by organic amendments and discusses the practical implications in relation to sequestration and bioavailability of metal(loid)s in soils. Copyright © 2010 Elsevier B.V. All rights reserved.

Decomposition by ectomycorrhizal fungi alters soil carbon storage in a simulation model

DOE PAGES

Moore, J. A. M.; Jiang, J.; Post, W. M.; ...

2015-03-06

Carbon cycle models often lack explicit belowground organism activity, yet belowground organisms regulate carbon storage and release in soil. Ectomycorrhizal fungi are important players in the carbon cycle because they are a conduit into soil for carbon assimilated by the plant. It is hypothesized that ectomycorrhizal fungi can also be active decomposers when plant carbon allocation to fungi is low. Here, we reviewed the literature on ectomycorrhizal decomposition and we developed a simulation model of the plant-mycorrhizae interaction where a reduction in plant productivity stimulates ectomycorrhizal fungi to decompose soil organic matter. Our review highlights evidence demonstrating the potential formore » ectomycorrhizal fungi to decompose soil organic matter. Our model output suggests that ectomycorrhizal activity accounts for a portion of carbon decomposed in soil, but this portion varied with plant productivity and the mycorrhizal carbon uptake strategy simulated. Lower organic matter inputs to soil were largely responsible for reduced soil carbon storage. Using mathematical theory, we demonstrated that biotic interactions affect predictions of ecosystem functions. Specifically, we developed a simple function to model the mycorrhizal switch in function from plant symbiont to decomposer. In conclusion, we show that including mycorrhizal fungi with the flexibility of mutualistic and saprotrophic lifestyles alters predictions of ecosystem function.« less

Simulations and field observations of root water uptake in plots with different soil water availability.

NASA Astrophysics Data System (ADS)

Cai, Gaochao; Vanderborght, Jan; Couvreur, Valentin; Javaux, Mathieu; Vereecken, Harry

2015-04-01

Root water uptake is a main process in the hydrological cycle and vital for water management in agronomy. In most models of root water uptake, the spatial and temporal soil water status and plant root distributions are required for water flow simulations. However, dynamic root growth and root distributions are not easy and time consuming to measure by normal approaches. Furthermore, root water uptake cannot be measured directly in the field. Therefore, it is necessary to incorporate monitoring data of soil water content and potential and root distributions within a modeling framework to explore the interaction between soil water availability and root water uptake. But, most models are lacking a physically based concept to describe water uptake from soil profiles with vertical variations in soil water availability. In this contribution, we present an experimental setup in which root development, soil water content and soil water potential are monitored non-invasively in two field plots with different soil texture and for three treatments with different soil water availability: natural rain, sheltered and irrigated treatment. Root development is monitored using 7-m long horizontally installed minirhizotubes at six depths with three replicates per treatment. The monitoring data are interpreted using a model that is a one-dimensional upscaled version of root water uptake model that describes flow in the coupled soil-root architecture considering water potential gradients in the system and hydraulic conductances of the soil and root system (Couvreur et al., 2012). This model approach links the total root water uptake to an effective soil water potential in the root zone. The local root water uptake is a function of the difference between the local soil water potential and effective root zone water potential so that compensatory uptake in heterogeneous soil water potential profiles is simulated. The root system conductance is derived from inverse modelling using measurements of soil water potentials, water contents, and root distributions. The results showed that this modelling approach reproduced soil water dynamics well in the different plots and treatments. Root water uptake reduced when the effective soil water potential decreased to around -70 to -100 kPa in the root zone. Couvreur, V., Vanderborght, J., and Javaux, M.: A simple three dimensional macroscopic root water uptake model based on the hydraulic architecture approach, Hydrol. Earth Syst. Sci., 16, 2957-2971, doi:10.5194/hess-16-2957-2012, 2012.

Efficacies of designer biochars in improving biomass and nutrient uptake of winter wheat grown in a hard setting subsoil layer.

PubMed

Sigua, G C; Novak, J M; Watts, D W; Johnson, M G; Spokas, K

2016-01-01

In the Coastal Plains region of the United States, the hard setting subsoil layer of Norfolk soils results in low water holding capacity and nutrient retention, which often limits root development. In this region, the Norfolk soils are under intensive crop production that further depletes nutrients and reduces organic carbon (C). Incorporation of pyrolyzed organic residues or "biochars" can provide an alternative recalcitrant C source. However, biochar quality and effect can be inconsistent and different biochars react differently in soils. We hypothesized that addition of different designer biochars will have variable effects on biomass and nutrient uptake of winter wheat. The objective of this study was to investigate the effects of designer biochars on biomass productivity and nutrient uptake of winter wheat (Triticum aestivum L.) in a Norfolk's hard setting subsoil layer. Biochars were added to Norfolk's hard setting subsoil layer at the rate of 40 Mg ha(-1). The different sources of biochars were: plant-based (pine chips, PC); animal-based (poultry litter, PL); 50:50 blend (50% PC:50% PL); 80:20 blend (80% PC:20% PL); and hardwood (HW). Aboveground and belowground biomass and nutrient uptake of winter wheat varied significantly (p⩽0.0001) with the different designer biochar applications. The greatest increase in the belowground biomass of winter wheat over the control was from 80:20 blend of PC:PL (81%) followed by HW (76%), PC (59%) and 50:50 blend of PC:PL (9%). However, application of PL resulted in significant reduction of belowground biomass by about 82% when compared to the control plants. The average uptake of P, K, Ca, Mg, Na, Al, Fe, Cu and Zn in both the aboveground and belowground biomass of winter wheat varied remarkably with biochar treatments. Overall, our results showed promising significance for the treatment of a Norfolk's hard setting subsoil layer since designer biochars did improve both aboveground/belowground biomass and nutrient uptake of winter wheat. Published by Elsevier Ltd.

Fluorene and Phenanthrene Uptake and Accumulation by Wheat, Alfalfa and Sunflower from the Contaminated Soil.

PubMed

Salehi-Lisar, Seyed Yahya; Deljoo, Somaye; Harzandi, Ahmad Mosen

2015-01-01

Polycyclic Aromatic Hydrocarbons (PAHs) are diverse organic contaminants released into the environment by both natural and anthropogenic activities. These compounds have negative impacts on plants growth and development. Although there are many reports on their existence in different parts of plant, their uptake and translocation pathways and mechanisms are not well understood yet. This paper highlights the uptake, translocation and accumulation of PAHs by wheat, sunflower and alfalfa through an experimental study under controlled conditions. Seeds were cultivated in a soil containing 50 mg/kg of phenanthrene and fluorene and their concentrations in plants roots and shoots were determined using a gas chromatograph after 7 and 14 days. The results showed that phenanthrene and fluorene concentrations in the treated plants were increased over the time. PAHs bioavailability was time and species dependent and generally, phenanthrene uptake and translocation was faster than that of fluorene, probably due to their higher Kow. Fluorene tended to accumulate in roots, but phenanthrene was transported to aerial parts of plants.

How mycorrhizal plant-soil interactions affect formation and degradation of soil organic matter in boreal forest

NASA Astrophysics Data System (ADS)

Adamczyk, Bartosz; Sietiö, Outi-Maaria; Ahvenainen, Anu; Strakova, Petra; Heinonsalo, Jussi

2017-04-01

Forest soil organic matter (SOM) contains more carbon (C) than all the flora and atmosphere combined and that is why C release as CO2 from SOM may have drastic consequences for climate globally. SOM is enormous C sink which has the potential to become C source (IPCC 2013). To predict long-term soil C storage and climate feedbacks we need profound understanding of dynamics and drivers of SOM decomposition. Ecosystem processes associated with C cycle are constrained by C and N interactions. At the level of ecosystem boreal forest is N-limited, as most of soil N is stored in recalcitrant organic form bound or complexed with soil compounds such as polyphenols. To improve N uptake, also from less available pools, plant species form symbioses with mycorrhizal fungi able to degrade recalcitrant N and sharing it with plants. As a feedback, plants provide to fungal symbiont assimilated C. Climate change through elevated CO2 level led to increases in photosynthesis which enhance the C flow belowground accelerating N uptake by plants also from more recalcitrant N pools. Increased SOM decomposition would possibly result also in increase of CO2 production from soil. Our field experiment was conducted at Hyytiälä forestry field station (SMEAR II, University of Helsinki) located in southern Finland (61°84'N, 24°26'E). In this 3-year long experiment, we discriminated SOM decomposition with different mesh bags filled with humus. These mesh bags allowed for the entrance of mycorrhiza and fine roots (1mm mesh size), or only mycorrhiza (50µm), or both were excluded (1µm). We followed changes in SOM content, N pools and enzymatic activity. The results suggests that plant-mycorrhiza interactions increase recalcitrant pool of organic N in SOM due to root-derived tannins, but mycorrhizal plants have still access to this N. Although mycorrhizal plant-soil interaction seems to strongly affect the formation of recalcitrant SOM, the net decomposition is not hindered by these chemical changes. This study underline that plant-soil feedbacks and especially soil chemistry behind this interaction are decisive factors for estimating changes in SOM decomposition rate.

Current advancements and challenges in soil-root interactions modelling

NASA Astrophysics Data System (ADS)

Schnepf, Andrea; Huber, Katrin; Abesha, Betiglu; Meunier, Felicien; Leitner, Daniel; Roose, Tiina; Javaux, Mathieu; Vanderborght, Jan; Vereecken, Harry

2015-04-01

Roots change their surrounding soil chemically, physically and biologically. This includes changes in soil moisture and solute concentration, the exudation of organic substances into the rhizosphere, increased growth of soil microorganisms, or changes in soil structure. The fate of water and solutes in the root zone is highly determined by these root-soil interactions. Mathematical models of soil-root systems in combination with non-invasive techniques able to characterize root systems are a promising tool to understand and predict the behaviour of water and solutes in the root zone. With respect to different fields of applications, predictive mathematical models can contribute to the solution of optimal control problems in plant recourse efficiency. This may result in significant gains in productivity, efficiency and environmental sustainability in various land use activities. Major challenges include the coupling of model parameters of the relevant processes with the surrounding environment such as temperature, nutrient concentration or soil water content. A further challenge is the mathematical description of the different spatial and temporal scales involved. This includes in particular the branched structures formed by root systems or the external mycelium of mycorrhizal fungi. Here, reducing complexity as well as bridging between spatial scales is required. Furthermore, the combination of experimental and mathematical techniques may advance the field enormously. Here, the use of root system, soil and rhizosphere models is presented through a number of modelling case studies, including image based modelling of phosphate uptake by a root with hairs, model-based optimization of root architecture for phosphate uptake from soil, upscaling of rhizosphere models, modelling root growth in structured soil, and the effect of root hydraulic architecture on plant water uptake efficiency and drought resistance.

Current Advancements and Challenges in Soil-Root Interactions Modelling

NASA Astrophysics Data System (ADS)

Schnepf, A.; Huber, K.; Abesha, B.; Meunier, F.; Leitner, D.; Roose, T.; Javaux, M.; Vanderborght, J.; Vereecken, H.

2014-12-01

Roots change their surrounding soil chemically, physically and biologically. This includes changes in soil moisture and solute concentration, the exudation of organic substances into the rhizosphere, increased growth of soil microorganisms, or changes in soil structure. The fate of water and solutes in the root zone is highly determined by these root-soil interactions. Mathematical models of soil-root systems in combination with non-invasive techniques able to characterize root systems are a promising tool to understand and predict the behaviour of water and solutes in the root zone. With respect to different fields of applications, predictive mathematical models can contribute to the solution of optimal control problems in plant recourse efficiency. This may result in significant gains in productivity, efficiency and environmental sustainability in various land use activities. Major challenges include the coupling of model parameters of the relevant processes with the surrounding environment such as temperature, nutrient concentration or soil water content. A further challenge is the mathematical description of the different spatial and temporal scales involved. This includes in particular the branched structures formed by root systems or the external mycelium of mycorrhizal fungi. Here, reducing complexity as well as bridging between spatial scales is required. Furthermore, the combination of experimental and mathematical techniques may advance the field enormously. Here, the use of root system, soil and rhizosphere models is presented through a number of modelling case studies, including image based modelling of phosphate uptake by a root with hairs, model-based optimization of root architecture for phosphate uptake from soil, upscaling of rhizosphere models, modelling root growth in structured soil, and the effect of root hydraulic architecture on plant water uptake efficiency and drought resistance.

Effects of continuous fertilization on bioavailability and fractionation of cadmium in soil and its uptake by rice (Oryza sativa L.).

PubMed

Huang, Qingqing; Yu, Yao; Wan, Yanan; Wang, Qi; Luo, Zhang; Qiao, Yuhui; Su, Dechun; Li, Huafen

2018-06-01

A four-year field trial was conducted in a rice paddy in southern China to determine the effects of continuous phosphate fertilizer, pig manure, chicken manure, and sewage sludge application on soil Cd accumulation in soil and Cd uptake by rice. The results showed that continuous application of fertilizers with higher Cd levels caused Cd to accumulate and redistribute in various soil fractions. In turn, these effects influenced Cd bioavailability in rice plants. After four years of phosphate fertilizer, pig manure, chicken manure, and sewage sludge application, the annual soil Cd accumulation rates were 0.007-0.032 mg kg -1 , 0.005-0.022 mg kg -1 , 0.002-0.013 mg kg -1 , and 0.032-0.087 mg kg -1 , respectively. Relative to the control, the pig- and chicken manure treatments significantly increased soil pH and reduced DTPA-extractable Cd (DTPA-Cd) and the exchangeable Cd fraction (Exc-Cd). In contrast, sewage sludge application significantly increased DTPA-Cd and Cd in all soil fractions. Phosphate fertilization had no significant effect on soil pH, DTPA-Cd, or Exc-Cd. Pearson's correlation coefficients showed that the rice grain Cd levels varied directly with DTPA-Cd, and Exc-Cd but inversely with soil pH. Pig- or chicken manure decreased rice grain Cd content, but sewage sludge increased both soil Cd availability and rice grain Cd uptake. Application of phosphate fertilizer had no significant effect on rice grain Cd content. The continuous use of organic- or phosphate fertilizer with elevated Cd content at high application rates may induce soil Cd accumulation and influence rice grain Cd accumulation. Copyright © 2018 Elsevier Ltd. All rights reserved.

Soil organic matter regulates molybdenum storage and mobility in forests

USGS Publications Warehouse

Marks, Jade A; Perakis, Steven; King, Elizabeth K.; Pett-Ridge, Julie

2015-01-01

The trace element molybdenum (Mo) is essential to a suite of nitrogen (N) cycling processes in ecosystems, but there is limited information on its distribution within soils and relationship to plant and bedrock pools. We examined soil, bedrock, and plant Mo variation across 24 forests spanning wide soil pH gradients on both basaltic and sedimentary lithologies in the Oregon Coast Range. We found that the oxidizable organic fraction of surface mineral soil accounted for an average of 33 %of bulk soil Mo across all sites, followed by 1.4 % associated with reducible Fe, Al, and Mn-oxides, and 1.4 % in exchangeable ion form. Exchangeable Mo was greatest at low pH, and its positive correlation with soil carbon (C) suggests organic matter as the source of readily exchangeable Mo. Molybdenum accumulation integrated over soil profiles to 1 m depth (τMoNb) increased with soil C, indicating that soil organic matter regulates long-term Mo retention and loss from soil. Foliar Mo concentrations displayed no relationship with bulk soil Mo, and were not correlated with organic horizon Mo or soil extractable Mo, suggesting active plant regulation of Mo uptake and/or poor fidelity of extractable pools to bioavailability. We estimate from precipitation sampling that atmospheric deposition supplies, on average, over 10 times more Mo annually than does litterfall to soil. In contrast, bedrock lithology had negligible effects on foliar and soil Mo concentrations and on Mo distribution among soil fractions. We conclude that atmospheric inputs may be a significant source of Mo to forest ecosystems, and that strong Mo retention by soil organic matter limits ecosystem Mo loss via dissolution and leaching pathways.

A study on zinc distribution in calcareous soils for cowpea (Vigna Unguiculata L.) and barely ( Hordeum Vulgare L.)

NASA Astrophysics Data System (ADS)

Boroomand, Naser; Maleki, Mohammad Reza

2010-05-01

Compared to other cereals, such as wheat and barley cultivars which have low sensitivity to Zn deficiency, cowpea is sensitive to zinc (Zn) deficiency, however it extensively grows even in soils with deficient in Zn. A 8-week greenhouse experiment was conducted to study the response of cowpea and barely to Zn in calcareous soils with different DTPA- Zn. The soil samples were taken from soil surface up to 0.3 m in which their DTPA- Zn ranged from 0.5 to 3.5 mg kg-1. Shoot dry matter, concentration and uptake of Zn were found to be significantly correlated with soil DTPA- Zn in cowpea and barely. Critical deficiency level of Zn in cowpea was 1.3 mg kg-1 in soil and 28.5 mg kg-1 in shoot dry matter, however, to barely symptoms of Zn deficiency was not observed and concentration of Zn was higher than the critical level reported in literatures. Organic carbon (OC), calcium carbonate equivalent (CCE), pH and field capacity soil moisture content(FC) were significantly correlated with plant responses to Zn which were the most influenced characteristics to Zn uptake by plants.

[Mobilization of potassium from soil by ectomycorrhizal fungi].

PubMed

Zhang, Liang; Wang, Mingxia; Zhang, Wei; Huang, Jianguo; Yuan, Ling

2014-07-04

Ectomycorrhizal fungi (ECMF), important components in forest ecosystems, could form symbionts with wooden plant roots and participate in nutrient absorption. Boletnus sp. (Bo 07), Lactarius delicious (Ld 03) and Pisolithus tinctorius (Pt 715) isolated from Southwest China and Cenococcum geophilum (Cg 04) from Daqing Mountain, Inn Mongolia, China, were cultured in liquid Pachlewsk medium at 25 +/- 1 degrees C for 28 days with soil as sole K source. Fungal biomass, K uptake, efflux of protons and organic acids, and changes of soil K pools were measured to study K mobilization from soil by ECMFs. ] The fungal biomass, K concentration and uptake of Bo 07, Ld 03 and Pt 715 were much higher than Cg 04, indicating their strong abilities to absorb K and to adapt low K environment by bio-evolution and selection. K concentrations in culture solution were increased by ECMFs compared to blank control (without ECMF). ECMFs could promote K release from the soil into culture solution. Bo 07, Ld 03 and Pt 715 increased significantly exchangeable K in soils, while structural K in soil was decreased by Bo 07 and Ld 03. They could thus mobilize unavailable K from ECMF isolates could mobilize unavailable K in soils.

Inverse modeling of the biodegradation of emerging organic contaminants in the soil-plant system.

PubMed

Hurtado, Carlos; Trapp, Stefan; Bayona, Josep M

2016-08-01

Understanding the processes involved in the uptake and accumulation of organic contaminants into plants is very important to assess the possible human risk associated with. Biodegradation of emerging contaminants in plants has been observed, but kinetical studies are rare. In this study, we analyse experimental data on the uptake of emerging organic contaminants into lettuce derived in a greenhouse experiment. Measured soil, root and leaf concentrations from four contaminants were selected within the applicability domain of a steady-state two-compartment standard plant uptake model: bisphenol A (BPA), carbamazepine (CBZ), triclosan (TCS) and caffeine (CAF). The model overestimated concentrations in most cases, when no degradation rates in plants were entered. Subsequently, biodegradation rates were fitted so that the measured concentrations were met. Obtained degradation kinetics are in the order, BPA < CAF ≈ TCS < CBZ in roots, and BPA ≈ TCS < CBZ < CAF in leaves. Kinetics determined by inverse modeling are, despite the inherent uncertainty, indicative of the dissipation rates. The advantage of the procedure that is additional knowledge can be gained from existing experimental data. Dissipation kinetics found via inverse modeling is not a conclusive proof for biodegradation and confirmation by experimental studies is needed. Copyright © 2016. Published by Elsevier Ltd.

Utilizing thin-film solid-phase extraction to assess the effect of organic carbon amendments on the bioavailability of DDT and dieldrin to earthworms

USGS Publications Warehouse

Andrade, Natasha A.; Centofanti, Tiziana; McConnell, Laura L.; Hapeman, Cathleen J.; Torrents, Alba; Anh, Nguyen; Beyer, W. Nelson; Chaney, Rufus L.; Novak, Jeffrey M.; Anderson, Marya O.; Cantrell, Keri B.

2014-01-01

Improved approaches are needed to assess bioavailability of hydrophobic organic compounds in contaminated soils. Performance of thin-film solid-phase extraction (TF-SPE) using vials coated with ethylene vinyl acetate was compared to earthworm bioassay (Lumbricus terrestris). A DDT and dieldrin contaminated soil was amended with four organic carbon materials to assess the change in bioavailability. Addition of organic carbon significantly lowered bioavailability for all compounds except for 4,4′-DDT. Equilibrium concentrations of compounds in the polymer were correlated with uptake by earthworms after 48d exposure (R2 = 0.97; p 40yr of aging. Results show that TF-SPE can be useful in examining potential risks associated with contaminated soils and to test effectiveness of remediation efforts.

Increased biomass and quality and reduced heavy metal accumulation of edible tissues of vegetables in the presence of Cd-tolerant and immobilizing Bacillus megaterium H3.

PubMed

Wang, Qi; Zhang, Wen-Ji; He, Lin-Yan; Sheng, Xia-Fang

2018-02-01

A Cd-resistant and immobilizing Bacillus megaterium H3 was characterized for its impact on the biomass and quality and heavy metal uptake of edible tissues of two vegetables (Brassica campestris L. var. Aijiaohuang and Brassica rapa L. var. Shanghaiqing) grown in heavy metal-polluted soil. The impact of strain H3 on the soil quality was also evaluated. The increase in the edible tissue biomass and the contents of soluble proteins and vitamin C of the vegetables inoculated with strain H3 ranged from 18% to 33%, 17% to 31%, and 15% to 19%, respectively, compared with the controls. Strain H3 significantly decreased the edible tissue Cd and Pb contents of the two greens (41-80%), DTPA-extractable Cd content (35-47%) of the rhizosphere soils, and Cd and Pb translocation factors (25-56%) of the greens compared with the controls. Moreover, strain H3 significantly increased the organic matter content (17-21%) and invertase activity (13-14%) of the rhizosphere soils compared with the controls. Our results demonstrated the increased edible tissue biomass and quality, decreased Cd and Pb uptake of the edible tissues, and improved soil quality in the presence of strain H3. The results also suggested an effective bacterial-enhanced technique for decreased metal uptake of greens and improved vegetable and soil qualities in the metal-contaminated soils. Copyright © 2017 Elsevier Inc. All rights reserved.

Do soils loose phosphorus with dissolved organic matter?

NASA Astrophysics Data System (ADS)

Kaiser, K.; Brödlin, D.; Hagedorn, F.

2014-12-01

During ecosystem development and soil formation, primary mineral sources of phosphorus are becoming increasingly depleted. Inorganic phosphorus forms tend to be bound strongly to or within secondary minerals, thus, are hardly available to plants and are not leached from soil. What about organic forms of phosphorus? Since rarely studied, little is known on the composition, mobility, and bioavailability of dissolved organic phosphorus. There is some evidence that plant-derived compounds, such as phytate, bind strongly to minerals as well, while microbial compounds, such as nucleotides and nucleic acids, may represent more mobile fractions of soil phosphorus. In some weakly developed, shallow soils, leaching losses of phosphorus seem to be governed by mobile organic forms. Consequently, much of the phosphorus losses observed during initial stages of ecosystem development may be due to the leaching of dissolved organic matter. However, the potentially mobile microbial compounds are enzymatically hydrolysable. Forest ecosystems on developed soils already depleted in easily available inorganic phosphorus are characterized by rapid recycling of organic phosphors. That can reduce the production of soluble forms of organic phosphorus as well as increase the enzymatic hydrolysis and subsequent plant uptake of phosphorus bound within dissolved organic matter. This work aims at giving an outlook to the potential role of dissolved organic matter in the cycling of phosphorus within developing forest ecosystems, based on literature evidence and first results of ongoing research.

Fate and Uptake of Pharmaceuticals in Soil–Earthworm Systems

PubMed Central

2014-01-01

Pharmaceuticals present a potential threat to soil organisms, yet our understanding of their fate and uptake in soil systems is limited. This study therefore investigated the fate and uptake of 14C-labeled carbamazepine, diclofenac, fluoxetine, and orlistat in soil–earthworm systems. Sorption coefficients increased in the order of carbamazepine < diclofenac < fluoxetine < orlistat. Dissipation of 14C varied by compound, and for orlistat, there was evidence of formation of nonextractable residues. Uptake of 14C was seen for all compounds. Depuration studies showed complete elimination of 14C for carbamazepine and fluoxetine treatments and partial elimination for orlistat and diclofenac, with greater than 30% of the 14C remaining in the tissue at the end of the experiment. Pore-water-based bioconcentration factors (BCFs), based on uptake and elimination of 14C, increased in the order carbamazepine < diclofenac < fluoxetine and orlistat. Liquid chromatography–tandem mass spectrometry and liquid chromatography–Fourier transform mass spectrometry indicated that the observed uptake in the fluoxetine and carbamazepine treatments was due to the parent compounds but that diclofenac was degraded in the test system so uptake was due to unidentifiable transformation products. Comparison of our data with outputs of quantitative structure−activity relationships for estimating BCFs in worms showed that these models tend to overestimate pharmaceutical BCFs so new models are needed. PMID:24762061

Arsenic-phosphorus interactions in the soil-plant-microbe system: Dynamics of uptake, suppression and toxicity to plants.

PubMed

Anawar, Hossain M; Rengel, Zed; Damon, Paul; Tibbett, Mark

2018-02-01

High arsenic (As) concentrations in the soil, water and plant systems can pose a direct health risk to humans and ecosystems. Phosphate (Pi) ions strongly influence As availability in soil, its uptake and toxicity to plants. Better understanding of As(V)-Pi interactions in soils and plants will facilitate a potential remediation strategy for As contaminated soils, reducing As uptake by crop plants and toxicity to human populations via manipulation of soil Pi content. However, the As(V)-Pi interactions in soil-plant systems are complex, leading to contradictory findings among different studies. Therefore, this review investigates the role of soil type, soil properties, minerals, Pi levels in soil and plant, Pi transporters, mycorrhizal association and microbial activities on As-Pi interactions in soils and hydroponics, and uptake by plants, elucidate the key mechanisms, identify key knowledge gaps and recommend new research directions. Although Pi suppresses As uptake by plants in hydroponic systems, in soils it could either increase or decrease As availability and toxicity to plants depending on the soil types, properties and charge characteristics. In soil, As(V) availability is typically increased by the addition of Pi. At the root surface, the Pi transport system has high affinity for Pi over As(V). However, Pi concentration in plant influences the As transport from roots to shoots. Mycorrhizal association may reduce As uptake via a physiological shift to the mycorrhizal uptake pathway, which has a greater affinity for Pi over As(V) than the root epidermal uptake pathway. Copyright © 2017 Elsevier Ltd. All rights reserved.

Comparison between numeric and approximate analytic solutions for the prediction of soil metal uptake by roots. Example of cadmium.

PubMed

Schneider, André; Lin, Zhongbing; Sterckeman, Thibault; Nguyen, Christophe

2018-04-01

The dissociation of metal complexes in the soil solution can increase the availability of metals for root uptake. When it is accounted for in models of bioavailability of soil metals, the number of partial differential equations (PDEs) increases and the computation time to numerically solve these equations may be problematic when a large number of simulations are required, for example for sensitivity analyses or when considering root architecture. This work presents analytical solutions for the set of PDEs describing the bioavailability of soil metals including the kinetics of complexation for three scenarios where the metal complex in solution was fully inert, fully labile, or partially labile. The analytical solutions are only valid i) at steady-state when the PDEs become ordinary differential equations, the transient phase being not covered, ii) when diffusion is the major mechanism of transport and therefore, when convection is negligible, iii) when there is no between-root competition. The formulation of the analytical solutions is for cylindrical geometry but the solutions rely on the spread of the depletion profile around the root, which was modelled assuming a planar geometry. The analytical solutions were evaluated by comparison with the corresponding PDEs for cadmium in the case of the French agricultural soils. Provided that convection was much lower than diffusion (Péclet's number<0.02), the cumulative uptakes calculated from the analytic solutions were in very good agreement with those calculated from the PDEs, even in the case of a partially labile complex. The analytic solutions can be used instead of the PDEs to predict root uptake of metals. The analytic solutions were also used to build an indicator of the contribution of a complex to the uptake of the metal by roots, which can be helpful to predict the effect of soluble organic matter on the bioavailability of soil metals. Copyright © 2017 Elsevier B.V. All rights reserved.

The Effects of Various Amendments on Trace Element Stabilization in Acidic, Neutral, and Alkali Soil with Similar Pollution Index

PubMed Central

Kim, Min-Suk; Min, Hyun-Gi; Lee, Sang-Hwan; Kim, Jeong-Gyu

2016-01-01

Many studies have examined the application of soil amendments, including pH change-induced immobilizers, adsorbents, and organic materials, for soil remediation. This study evaluated the effects of various amendments on trace element stabilization and phytotoxicity, depending on the initial soil pH in acid, neutral, and alkali conditions. As in all types of soils, Fe and Ca were well stabilized on adsorption sites. There was an effect from pH control or adsorption mechanisms on the stabilization of cationic trace elements from inorganic amendments in acidic and neutral soil. Furthermore, acid mine drainage sludge has shown great potential for stabilizing most trace elements. In a phytotoxicity test, the ratio of the bioavailable fraction to the pseudo-total fraction significantly affected the uptake of trace elements by bok choy. While inorganic amendments efficiently decreased the bioavailability of trace elements, significant effects from organic amendments were not noticeable due to the short-term cultivation period. Therefore, the application of organic amendments for stabilizing trace elements in agricultural soil requires further study. PMID:27835687

Soil Microbial Communities and Gas Dynamics Contribute to Arbuscular Mycorrhizal Nitrogen Uptake and Transfer to Plants

NASA Astrophysics Data System (ADS)

Hestrin, R.; Harrison, M. J.; Lehmann, J.

2016-12-01

Arbuscular mycorrhizal fungi (AMF) associate with most terrestrial plants and influence ecosystem ecology and biogeochemistry. There is evidence that AMF play a role in soil nitrogen cycling, in part by taking up nitrogen and transferring it to plants. However, many aspects of this process are poorly understood, including the factors that control fungal access to nitrogen stored in soil organic matter. In this study, we used stable isotopes and root exclusion to track nitrogen movement from organic matter into AMF and host plants. AMF significantly increased total plant biomass and nitrogen content, but both AMF and other soil microbes seemed to compete with plants for nitrogen. Surprisingly, gaseous nitrogen species also contributed significantly to plant nitrogen content under alkaline soil conditions. Our current experiments investigate whether free-living microbial communities that have evolved under a soil nitrogen gradient influence AMF access to soil organic nitrogen and subsequent nitrogen transfer to plants. This research links interactions between plants, mycorrhizal symbionts, and free-living microbes with terrestrial carbon and nitrogen dynamics.

The Effects of Various Amendments on Trace Element Stabilization in Acidic, Neutral, and Alkali Soil with Similar Pollution Index.

PubMed

Kim, Min-Suk; Min, Hyun-Gi; Lee, Sang-Hwan; Kim, Jeong-Gyu

2016-01-01

Many studies have examined the application of soil amendments, including pH change-induced immobilizers, adsorbents, and organic materials, for soil remediation. This study evaluated the effects of various amendments on trace element stabilization and phytotoxicity, depending on the initial soil pH in acid, neutral, and alkali conditions. As in all types of soils, Fe and Ca were well stabilized on adsorption sites. There was an effect from pH control or adsorption mechanisms on the stabilization of cationic trace elements from inorganic amendments in acidic and neutral soil. Furthermore, acid mine drainage sludge has shown great potential for stabilizing most trace elements. In a phytotoxicity test, the ratio of the bioavailable fraction to the pseudo-total fraction significantly affected the uptake of trace elements by bok choy. While inorganic amendments efficiently decreased the bioavailability of trace elements, significant effects from organic amendments were not noticeable due to the short-term cultivation period. Therefore, the application of organic amendments for stabilizing trace elements in agricultural soil requires further study.

Chemically and biologically-mediated fertilizing value of manure-derived biochar.

PubMed

Subedi, R; Taupe, N; Ikoyi, I; Bertora, C; Zavattaro, L; Schmalenberger, A; Leahy, J J; Grignani, C

2016-04-15

This study evaluates the potential of manure-derived biochars in promoting plant growth and enhancing soil chemical and biological properties during a 150day pot experiment. Biochars from pyrolysis of poultry litter (PL) and swine manure (SM) at 400 and 600°C, and a commonly available wood chip (WC) biochar produced at high temperature (1000°C) were incorporated to silt-loam (SL) and sandy (SY) soils on a 2% dry soil weight basis. Ryegrass was sown and moisture was adjusted to 60% water filled pore space (WFPS). The PL400 and SM400 biochars significantly increased (p<0.05) shoot dry matter (DM) yields (SL soil) and enhanced nitrogen (N), phosphorus (P) and potassium (K) uptake by the plants in both soils, compared to the Control. All biochars significantly increased the soil carbon (C) contents compared to the Control. Total N contents were significantly greater for PL400 and PL600 treatments in both soils. The dehydrogenase activity (DA) significantly increased for PL400 and SM400 treatments and was positively correlated with the volatile matter (VM) contents of the biochars, while β-glucosidase activity (GA) decreased for the same treatments in both soils. All biochars significantly shifted (p≤0.05) the bacterial community structure compared to the Control. This study suggests that pyrolysis of animal manures can produce a biochar that acts as both soil amendment and an organic fertilizer as proven by increased NPK uptake, positive liming effect and high soil nutrient availability, while WC biochar could work only in combination with fertilizers (organic as well as mineral). Copyright © 2016 Elsevier B.V. All rights reserved.

Aluminium Uptake and Translocation in Al Hyperaccumulator Rumex obtusifolius Is Affected by Low-Molecular-Weight Organic Acids Content and Soil pH

PubMed Central

Vondráčková, Stanislava; Száková, Jiřina; Drábek, Ondřej; Tejnecký, Václav; Hejcman, Michal; Müllerová, Vladimíra; Tlustoš, Pavel

2015-01-01

Background and Aims High Al resistance of Rumex obtusifolius together with its ability to accumulate Al has never been studied in weakly acidic conditions (pH > 5.8) and is not sufficiently described in real soil conditions. The potential elucidation of the role of organic acids in plant can explain the Al tolerance mechanism. Methods We established a pot experiment with R. obtusifolius planted in slightly acidic and alkaline soils. For the manipulation of Al availability, both soils were untreated and treated by lime and superphosphate. We determined mobile Al concentrations in soils and concentrations of Al and organic acids in organs. Results Al availability correlated positively to the extraction of organic acids (citric acid < oxalic acid) in soils. Monovalent Al cations were the most abundant mobile Al forms with positive charge in soils. Liming and superphosphate application were ambiguous measures for changing Al mobility in soils. Elevated transport of total Al from belowground organs into leaves was recorded in both lime-treated soils and in superphosphate-treated alkaline soil as a result of sufficient amount of Ca available from soil solution as well as from superphosphate that can probably modify distribution of total Al in R. obtusifolius as a representative of “oxalate plants.” The highest concentrations of Al and organic acids were recorded in the leaves, followed by the stem and belowground organ infusions. Conclusions In alkaline soil, R. obtusifolius is an Al-hyperaccumulator with the highest concentrations of oxalate in leaves, of malate in stems, and of citrate in belowground organs. These organic acids form strong complexes with Al that can play a key role in internal Al tolerance but the used methods did not allow us to distinguish the proportion of total Al-organic complexes to the free organic acids. PMID:25880431

Auxin-enhanced root growth for phytoremediation of sewage-sludge amended soil.

PubMed

Liphadzi, M S; Kirkham, M B; Paulsen, G M

2006-06-01

A technology to increase root growth would be advantageous for phytoremediation of trace metal polluted soil, because more roots would be available for metal uptake. The objective of this study was to determine if the auxin, indole-3-acetic acid (IAA), would increase root growth in soil with metals from sewage sludge, when the tetrasodium salt of the chelate EDTA (ethylenediamine-tetraacetic acid) was added to solubilize the metals. Sunflower (Helianthus annuus L.) plants grew in large pots containing either soil from a sludge farm or composted sludge. The EDTA salt was added at a rate of 1 g kg(-1) soil 37 days after planting. IAA at the rate of 3 or 6 mg l(-1) was sprayed on the leaves (500 ml) and added to the soil (500 ml) three times: 41, 50, and 74 days after planting. At harvest 98 days after planting, oven-dry weights were measured, and plant organs were analyzed for Cd, Cu, Fe, Mn, Ni, Pb, and Zn. Metal uptake was determined as the product of metal concentration in an organ and weight. IAA increased root growth of plants grown in the soil with sludge when no EDTA was present. With no EDTA, Mn and Ni in leaves of plants grown in the soil were higher at 3 and 6 mg l(-1) IAA compared to 0 mg l(-1) IAA. With and without EDTA, Cd and Pb in leaves of plants grown in the compost were higher with 3 and 6 mg l(-1) IAA compared to 0 mg l(-1) IAA.

Effect of heavy metals and organic matter on root exudates (low molecular weight organic acids) of herbaceous species: An assessment in sand and soil conditions under different levels of contamination.

PubMed

Montiel-Rozas, M M; Madejón, E; Madejón, P

2016-09-01

Bioavailability of heavy metals can be modified by different root exudates. Among them, low molecular weight organic acids (LMWOAs) play an important role in this process. Three plant species (Poa annua, Medicago polymorpha and Malva sylvestris), potentially used for phytoremediation, have been assessed for both metal uptake and LMWOAs excretion in contaminated environments with different concentrations of Cd, Cu and Zn. The experiments have been carried out in washed sand and in three contaminated soils where two organic amendments were added (biosolid compost and alperujo compost). The most abundant LMWOAs excreted by all studied plants were oxalic and malic acids, although citric and fumaric acids were also detected. The general tendency was that plants responded to an increase of heavy metal stress releasing higher amounts of LMWOAs. This is an efficient exclusion mechanism reducing the metal uptake and allowing the plant growth at high levels of contamination. In the experiment using wash sand as substrate, the organic acids composition and quantity depended mainly on plant species and metal contamination. M. polymorpha was the species that released the highest concentrations of LMWOAs, both in sand and in soils with no amendment addition, whereas a decrease of these acids was observed with the addition of amendments. Our results established a clear effect of organic matter on the composition and total amount of LMWOAs released. The increase of organic matter and nutrients, through amendments, improved the soil quality reducing phytotoxicity. As a result, organic acids exudates decreased and were solely composed of oxalic acid (except for M. polymorpha). The release of LMWOAs has proved to be an important mechanism against heavy metal stress, unique to each species and modifiable by means of organic amendment addition. Copyright © 2016 Elsevier Ltd. All rights reserved.

Temporal variations and spatial distributions of heavy metals in a wastewater-irrigated soil-eggplant system and associated influencing factors.

PubMed

Ai, Shiwei; Liu, Bailin; Yang, Ying; Ding, Jian; Yang, Wenzhi; Bai, Xiaojuan; Naeem, Sajid; Zhang, Yingmei

2018-05-30

Heavy metal pollution in farmlands is highly concerned as crops' easy-uptake of heavy metal can ultimately affect consumers. In order to offer suggestions on cultivating safe quality vegetable, specifically eggplant which is widely consumed for its nutritional value and antioxidant activity, a field study was undertaken to investigate the temporal variations and spatial distributions of heavy metals in a wastewater-irrigated soil-eggplant system. In the present study, eggplants were planted in the farmlands of Weichuan village (WC) (relatively unpolluted field), Liangzhuang village (LZ) (moderately polluted field) and Minqin village (MQ) (seriously polluted field) to elucidate their temporal uptake processes of heavy metals described by the sigmoid model. Eggplant tissues from severely polluted farmlands were found with higher heavy metal concentrations and lower yields compared with other two groups. What is more, 25 farmlands along the Dongdagou stream (heavy metals polluted stream) were chosen to analyze the spatial distribution of heavy metals in soils and eggplants. Heavy metal concentrations in eggplants decreased with the decline of heavy metal concentrations in soil from upstream (pollution source) to downstream. Moreover, several methods were employed to assess bioavailability of heavy metals in soils. All the bioavailable heavy metals were found in linear positive correlations with heavy metal concentrations. Meanwhile, linear correlations were found between heavy metals in soils and eggplants. At last, redundancy analysis was used to investigate the effects of soil properties (pH, organic matter and texture of soils) and heavy metals on eggplants' uptake. The results indicated that soil heavy metals had a dominant impact on their accumulations in eggplant fruit, with a variance contribution of 78.0%, while soil properties had a regulatory effect, with a variance contribution of 5.2%. Copyright © 2018 Elsevier Inc. All rights reserved.

Organic fertilization for soil improvement in a vegetable cropping system

NASA Astrophysics Data System (ADS)

Verhaeghe, Micheline; De Rocker, Erwin; De Reycke, Luc

2016-04-01

Vegetable Research Centre East-Flanders Karreweg 6, 9770 Kruishoutem, Belgium A long term trial for soil improvement by organic fertilization was carried out in Kruishoutem from 2001 till 2010 in a vegetable rotation (carrots - leek - lettuce (2/year) - cauliflower (2/year) - leek - carrots - lettuce (2/year) - cauliflower (2/year) - leek and spinach). The trial compared yearly applications of 30 m²/ha of three types of compost (green compost, vfg-compost and spent mushroom compost) with an untreated object which did not receive any organic fertilization during the trial timescale. The organic fertilization was applied shortly before the cropping season. Looking at the soil quality, effects of organic fertilization manifest rather slow. The first four years after the beginning of the trial, no increase in carbon content of the soil is detectable yet. Although, mineralization of the soil has increased. The effect on the mineralization is mainly visible in crops with a lower N uptake (e.g. carrots) leading to a higher nitrate residue after harvest. Effects on soil structure and compaction occur rather slowly although, during the first two cropping seasons compost applications increase the water retention capacity of the soil. Compost increases the pH of the soil from the first year on till the end of the trial in 2010. Thus, organic fertilization impedes acidification in light sandy soils. Also soil fertility benefits from compost by an increase in K-, Ca- and Mg- content in the soil from the second year on. After 10 years of organic fertilization, yield and quality of spinach were increased significantly (p<0.05) compared to the untreated object. Also leek (2002 and 2009) and lettuce (2003 and 2007) benefit from organic fertilization.

Interpretation and estimation for dynamic mobility of chlorpyrifos in soils containing different organic matters.

PubMed

Hwang, Jeong-In; Lee, Sung-Eun; Kim, Jang-Eok

2015-12-01

The adsorption and removal behaviors of the organophosphate insecticide chlorpyrifos in two soils (AS and GW soils) with different organic matter contents were investigated to predict the dynamic residues in the soil environment. The adsorption test showed that the chlorpyrifos adsorptive power for the AS soil containing high organic matter content was greater than that for the GW soil. The extent of the time-dependent removal of chlorpyrifos in the tested soils was not significantly different except at 90 days after the treatment. The availability of a chemical-specific residue model developed in this study was statistically assessed to estimate the chlorpyrifos residue in soil solutions that could be absorbed into plants. The values modeled using the soil experimental data were satisfactory, having a mean deviation of 32% from the measured data. The correlation between the modeled and measured data was acceptable, with mean coefficients of correlation (R(2)) of 0.89. Furthermore, the average of the residual error was low at 0.43, which corresponded to a mean factor of -1.9. The developed model could be used as a critical tool to predict the subsequent plant uptake of chlorpyrifos.

Ectomycorrhizal Fungal Protein Degradation Ability Predicted by Soil Organic Nitrogen Availability

PubMed Central

Stas, Jelle; Nguyen, Nhu H.; Kuyper, Thomas W.; Carleer, Robert; Vangronsveld, Jaco; Colpaert, Jan V.; Kennedy, Peter G.

2015-01-01

In temperate and boreal forest ecosystems, nitrogen (N) limitation of tree metabolism is alleviated by ectomycorrhizal (ECM) fungi. As forest soils age, the primary source of N in soil switches from inorganic (NH4+ and NO3−) to organic (mostly proteins). It has been hypothesized that ECM fungi adapt to the most common N source in their environment, which implies that fungi growing in older forests would have greater protein degradation abilities. Moreover, recent results for a model ECM fungal species suggest that organic N uptake requires a glucose supply. To test the generality of these hypotheses, we screened 55 strains of 13 Suillus species with different ecological preferences for their in vitro protein degradation abilities. Suillus species preferentially occurring in mature forests, where soil contains more organic matter, had significantly higher protease activity than those from young forests with low-organic-matter soils or species indifferent to forest age. Within species, the protease activities of ecotypes from soils with high or low soil organic N content did not differ significantly, suggesting resource partitioning between mineral and organic soil layers. The secreted protease mixtures were strongly dominated by aspartic peptidases. Glucose addition had variable effects on secreted protease activity; in some species, it triggered activity, but in others, activity was repressed at high concentrations. Collectively, our results indicate that protease activity, a key ectomycorrhizal functional trait, is positively related to environmental N source availability but is also influenced by additional factors, such as carbon availability. PMID:26682855

[Rhizosphere effect of nutrients in different maize soils with different fertility levels].

PubMed

Wu, L; Zhang, S

2000-08-01

Maize plants and soil samples were collected from Jilin Province to study the nutrient dynamics in soil-maize plant rhizosphere and their relationship with plant uptake. The results showed that NH4(+)-N and NO3(-)-N were accumulated in rhizospheric soil, and mainly controlled by the application of chemical fertilizers. Soil available P was depleted in high fertility fields, especially in high seedling density, while accumulated in low fertility fields. Soil available K was accumulated in rhizospheric soil, and its accumulation rate was higher in high fertility than in low fertility fields. The nutrient absorption amount was N approximately K > P for maize plant shoots and roots, but was N > K > P for seeds. The contribution rate of chemical fertilizers to maize yield was only 1/5-1/3 in Jilin Province, and the rest was contributed by the application of organic manure, such as chicken feces or cow feces, and by the mineralization of soil organic matter.

Novel Applications for Oxalate-Phosphate-Amine Metal-Organic-Frameworks (OPA-MOFs): Can an Iron-Based OPA-MOF Be Used as Slow-Release Fertilizer?

PubMed Central

Anstoetz, Manuela; Rose, Terry J.; Clark, Malcolm W.; Yee, Lachlan H.; Raymond, Carolyn A.; Vancov, Tony

2015-01-01

A porous iron-based oxalate-phosphate-amine metal-organic framework material (OPA-MOF) was investigated as a microbially-induced slow-release nitrogen (N) and phosphorus (P) fertilizer. Seedling growth, grain yields, nutrient uptake of wheat plants, and soil dynamics in incubated soil, were investigated using OPA-MOF vs standard P (triple-superphosphate) and N (urea) fertilizers in an acidic Ferralsol at two application rates (equivalent 120 and 40 kg N ha-1). While urea hydrolysis in the OPA-MOF treatment was rapid, conversion of ammonium to nitrate was significantly inhibited compared to urea treatment. Reduced wheat growth in OPA-MOF treatments was not caused by N-deficiency, but by limited P-bioavailability. Two likely reasons were slow P-mobilisation from the OPA-MOF or rapid P-binding in the acid soil. P-uptake and yield in OPA-MOF treatments were significantly higher than in nil-P controls, but significantly lower than in conventionally-fertilised plants. OPA-MOF showed potential as enhanced efficiency N fertilizer. However, as P-bioavailability was insufficient to meet plant demands, further work should determine if P-availability may be enhanced in alkaline soils, or whether central ions other than Fe, forming the inorganic metal-P framework in the MOF, may act as a more effective P-source in acid soils. PMID:26633174

Novel Applications for Oxalate-Phosphate-Amine Metal-Organic-Frameworks (OPA-MOFs): Can an Iron-Based OPA-MOF Be Used as Slow-Release Fertilizer?

PubMed

Anstoetz, Manuela; Rose, Terry J; Clark, Malcolm W; Yee, Lachlan H; Raymond, Carolyn A; Vancov, Tony

2015-01-01

A porous iron-based oxalate-phosphate-amine metal-organic framework material (OPA-MOF) was investigated as a microbially-induced slow-release nitrogen (N) and phosphorus (P) fertilizer. Seedling growth, grain yields, nutrient uptake of wheat plants, and soil dynamics in incubated soil, were investigated using OPA-MOF vs standard P (triple-superphosphate) and N (urea) fertilizers in an acidic Ferralsol at two application rates (equivalent 120 and 40 kg N ha(-1)). While urea hydrolysis in the OPA-MOF treatment was rapid, conversion of ammonium to nitrate was significantly inhibited compared to urea treatment. Reduced wheat growth in OPA-MOF treatments was not caused by N-deficiency, but by limited P-bioavailability. Two likely reasons were slow P-mobilisation from the OPA-MOF or rapid P-binding in the acid soil. P-uptake and yield in OPA-MOF treatments were significantly higher than in nil-P controls, but significantly lower than in conventionally-fertilised plants. OPA-MOF showed potential as enhanced efficiency N fertilizer. However, as P-bioavailability was insufficient to meet plant demands, further work should determine if P-availability may be enhanced in alkaline soils, or whether central ions other than Fe, forming the inorganic metal-P framework in the MOF, may act as a more effective P-source in acid soils.

The pitcher plant Sarracenia purpurea can directly acquire organic nitrogen and short-circuit the inorganic nitrogen cycle.

PubMed

Karagatzides, Jim D; Butler, Jessica L; Ellison, Aaron M

2009-07-07

Despite the large stocks of organic nitrogen in soil, nitrogen availability limits plant growth in many terrestrial ecosystems because most plants take up only inorganic nitrogen, not organic nitrogen. Although some vascular plants can assimilate organic nitrogen directly, only recently has organic nitrogen been found to contribute significantly to the nutrient budget of any plant. Carnivorous plants grow in extremely nutrient-poor environments and carnivory has evolved in these plants as an alternative pathway for obtaining nutrients. We tested if the carnivorous pitcher plant Sarracenia purpurea could directly take up intact amino acids in the field and compared uptake of organic and inorganic forms of nitrogen across a gradient of nitrogen deposition. We hypothesized that the contribution of organic nitrogen to the nitrogen budget of the pitcher plant would decline with increasing nitrogen deposition. At sites in Canada (low nitrogen deposition) and the United States (high nitrogen deposition), individual pitchers were fed two amino acids, glycine and phenylalanine, and inorganic nitrogen (as ammonium nitrate), individually and in mixture. Plants took up intact amino acids. Acquisition of each form of nitrogen provided in isolation exceeded uptake of the same form in mixture. At the high deposition site, uptake of organic nitrogen was higher than uptake of inorganic nitrogen. At the low deposition site, uptake of all three forms of nitrogen was similar. Completeness of the associated detritus-based food web that inhabits pitcher-plant leaves and breaks down captured prey had no effect on nitrogen uptake. By taking up intact amino acids, Sarracenia purpurea can short-circuit the inorganic nitrogen cycle, thus minimizing potential bottlenecks in nitrogen availability that result from the plant's reliance for nitrogen mineralization on a seasonally reconstructed food web operating on infrequent and irregular prey capture.

The influence of wine-distillery waste compost on nitrogen and phosphorus dynamics and uptake by a melon crop in a shallow calcareous soil

NASA Astrophysics Data System (ADS)

Requejo, M. I.; Villena, R.; Ribas, F.; Castellanos, M. T.; Cabello, M. J.; Arce, A.; Cartagena, M. C.

2012-04-01

In Mediterranean countries, the large quantity of organic wastes generated by the winery industry constitutes a serious environmental concern, due to its low pH and high content of phenolic compounds. This is accompanied by a seasonal production that makes their management difficult. Winery wastes are characterized by high organic matter contents, low electrical conductivity values and notable contents in macronutrients, so their use as organic amendments is a good management option for improving soil fertility. However, a composting treatment is necessary to convert these organic wastes into more stable, hygienic and humic-rich materials. The aim of this work was to evaluate the effects of the application of exhausted grape marc compost (composed of dealcoholized pulp, skins and stems) as fertilizer in soil nitrogen and phosphorus availability and uptake by a melon crop (Cucumis melo L.). This experiment was carried out from May to September 2011 in Ciudad Real (Spain). This area was designated "vulnerable zone" by the "Nitrates Directive" 91/676/CEE. The soil was a shallow sandy-loam (Alfisol Xeralf Petrocalcic Palexeralfs) with a depth of 0.60 m and a discontinuous petrocalcic horizon between 0.60 and 0.70 m, slightly basic (pH 7.9), poor in organic matter (0.20%), rich in potassium (407 ppm) and with a medium level of phosphorus (19.4 ppm). The experiment had a randomised complete block design, with four treatments consisted of four compost doses: 0 (D0), 6.7 (D1), 13.3 (D2) and 20 T compost ha-1 (D3), in order to determine the optimum dose to ensure nutrient demand, maximizing yield and minimizing nutrient losses. Acknowledgements This project has been supported by INIA-RTA2010-00110-C03-01.

Root Water Uptake and Soil Moisture Pattern Dynamics - Capturing Connections, Controls and Causalities

NASA Astrophysics Data System (ADS)

Blume, T.; Heidbuechel, I.; Hassler, S. K.; Simard, S.; Guntner, A.; Stewart, R. D.; Weiler, M.

2015-12-01

We hypothesize that there is a shift in controls on landscape scale soil moisture patterns when plants become active during the growing season. Especially during the summer soil moisture patterns are not only controlled by soils, topography and related abiotic site characteristics but also by root water uptake. Root water uptake influences soil moisture patterns both in the lateral and vertical direction. Plant water uptake from different soil depths is estimated based on diurnal fluctuations in soil moisture content and was investigated with a unique setup of 46 field sites in Luxemburg and 15 field sites in Germany. These sites cover a range of geologies, soils, topographic positions and types of vegetation. Vegetation types include pasture, pine forest (young and old) and different deciduous forest stands. Available data at all sites includes information at high temporal resolution from 3-5 soil moisture and soil temperature profiles, matrix potential, piezometers and sapflow sensors as well as standard climate data. At sites with access to a stream, discharge or water level is also recorded. The analysis of soil moisture patterns over time indicates a shift in regime depending on season. Depth profiles of root water uptake show strong differences between different forest stands, with maximum depths ranging between 50 and 200 cm. Temporal dynamics of signal strength within the profile furthermore suggest a locally shifting spatial distribution of root water uptake depending on water availability. We will investigate temporal thresholds (under which conditions spatial patterns of root water uptake become most distinct) as well as landscape controls on soil moisture and root water uptake dynamics.

Investigating substrate use efficiency across different microbial physiologies in soil-extracted, solubilized organic matter (SESOM)

NASA Astrophysics Data System (ADS)

Cyle, K. T.; Martinez, C. E.

2017-12-01

Recent experimental work has elevated the importance of microbial processing for the stabilization of fresh carbon inputs within the soil mineral matrix. Enhancing our understanding of soil carbon and nitrogen dynamics therefore requires a better understanding of how efficiently microbial metabolism can process low molecular weight carbon substrates (carbon use efficiency, CUE) under environmentally relevant conditions. One approach to better understanding microbial uptake rates and CUE is the ecophysiological study of soil isolates in liquid media culture consisting of soil-extracted solubilized organic matter (SESOM). We are using SESOM from an Oa horizon under hemlock hardwood vegetation in upstate New York as liquid media for the growth of 12 isolates from the Oa and B horizon of the same site. Here we seek to test the uptake rates as well as CUE of 5 different low molecular weight substrates spanning compound class and nominal oxidation state (glucose, acetate, formate, glycine, valine) by isolates differing in phylogeny and physiology. The use of a spike of each of the 13C-labeled substrates into SESOM, along with a 0.2 μm filtration step, allows accurate partitioning of labeled carbon between biomass, gaseous CO2 as well as the exometabolome. Coupled UHPLC-MS measurements are being used to identify and determine uptake rates of over 80 potential C substrates present in the extract as well as our labeled substrate of interest along the course of the isolate growth curve. This work seeks to utilize a gradient in substrate class as well as microbial physiologies to inform our understanding of C and N cycling under relevant soil solution conditions. Future experiments may also use labeled biomass from stationary phase to investigate the stabilization potential of anabolic products formed from each substrate with a clay fraction isolated from the same site.

Black Nitrogen or Plant-Derived Organic Nitrogen - which Form is More Efficiently Sequestered in Soils?

NASA Astrophysics Data System (ADS)

López-Martín, María; Velasco-Molina, Marta; Knicker, Heike

2014-05-01

Input of charcoal after forest fires can lead to considerable changes of the quality and quantity of organic matter in soils (SOM). This affects not only its organic C pool but also shifts its organic N composition from peptideous to N-heterocyclic structures (Knicker et al., 1996). In the present study we sought to understand how this alteration is affecting the N availability in fire affected soils. Therefore, we performed a medium-term pot experiment in which grass material (Lolium perenne) was grown on soil material (Cambisols) of a fire-affected and a fire-unaffected forest. The soils were topped with mixtures of ground fresh grass residues and KNO3 or charred grass material (pyrogenic organic matter; PyOM) with KNO3. Here, either the organic N or the inorganic N was isotopically enriched with 15N. Following the 15N concentration in the soil matrix and the growing plants as a function of incubation time (up to 16 months) by isotopic ratio mass spectrometry allowed us to indentify which N-source is most efficiently stabilized and how PyOM is affecting this process. Preliminary data indicated that only after the germination of the seeds, the concentration of the added inorganic 15N in the soil decreased considerably most likely due to its uptake by the growing plants but also due to N-losses by leaching and volatilization. Additional addition of plant residues or PyOM had no major effect on this behavior. Covering the soil with 15N-grass residues which simulates a litter layer led to a slow increase of the 15N concentration in the mineral soil during the first month. This is best explained by the ongoing incorporation of the litter into the soil matrix. After that a small decrease was observed, showing that the organic N was only slowly mobilized. Addition of 15N-PyOM showed a comparable behavior but with 15N concentration in the soil corresponding to twice of those of the pots amended with 15N-grass residues. After that the 15N concentrations decrease quickly and approached those of the pots with fresh grass litter supporting the mobilization of black nitrogen and its uptake by plants. Our results point to the suggestion that N in PyOM and humified SOM have comparable biochemical stability. In order to test this hypothesis, a further experiment was set up mixtures of soil and humified 15N grass residues or aged 15N grass char to which fresh PyOM or fresh grass residues, respectively, were added. In addition solid-state 15N NMR spectroscopy was applied to disclose the nature of the sequestered N. REFERENCES Knicker, H., Almendros, G., González-Vila, F.J., Martín, F., Lüdemann, H.-D., 1996. 13C- and 15N-NMR spectroscopic examination of the transformation of organic nitrogen in plant biomass during thermal treatment. Soil Biology and Biochemistry, 28, 1053-1060.

Metal availability, soil nutrient, and enzyme activity in response to application of organic amendments in Cd-contaminated soil.

PubMed

Yang, Zhanbiao; Liu, Lixia; Lv, Yanfeng; Cheng, Zhang; Xu, Xiaoxun; Xian, Junren; Zhu, Xuemei; Yang, Yuanxiang

2018-01-01

The study investigated the effects of organic amendments: green tea amendment (GTA) and oil cake amendment (OCA) on Cd bioavailability, soil nutrients, and soil enzyme activity in Cd-contaminated soil. The amendments were added to the soil at the doses of 1, 3, and 5% and were incubated for 45 days. Then, pakchoi cabbage was planted to test the remediation effect of the above two organic amendments. The diethylenetriaminepentaacetic acid (DTPA)-extractable Cd in GTA and OCA treatments was reduced by 14.69-27.51 and 13.75-68.77%, respectively, compared to no amendment-applied treatment. The application of GTA and OCA notably decreased the proportion of exchangeable fraction of Cd, but increased the percentage of oxide and organic-bound fraction of Cd, thereby suppressing the uptake by pakchoi cabbage. Cd concentration of aboveground parts decreased by 8.21-18.05 and 7.77-35.89% in GTA and OCA treatments, respectively. Relative to the no amendment-applied treatment, both GTA and OCA had enhanced soil nutrients and enzyme activities largely. Redundancy analysis showed that organic matter, total P, available N, and DTPA-extractable Cd significantly affected the enzyme activities. Furthermore, the application of OCA at the dose of 5% was more effective in reducing bioavailable Cd, enhancing soil available nutrients and urease and catalase activities in contaminated soil. These results indicated that oil cake should be used to immobilize metal and improve fertility and quality of Cd-contaminated soil.

Cold Tolerance of Plants Used for Cold-Regions Revegetation

DTIC Science & Technology

1990-10-01

water Mitochondrial 02 uptake Sweet potatot Decreased translocation, which can result in the desiccation of Chlorogenic acid Sweet potato Increased...Amino acids Bean Increased of toxic substances between the ice and the soil surface. Protein Bean Decreased Also, frozen soil and plant stems can prevent...warmer aerial plant parts. Oxalic acid Oxalis sp. Increased Chlorophyll Bean Decreased Frost heaving has been a concern in forestry and Organic acids

Chromium speciation, bioavailability, uptake, toxicity and detoxification in soil-plant system: A review.

PubMed

Shahid, Muhammad; Shamshad, Saliha; Rafiq, Marina; Khalid, Sana; Bibi, Irshad; Niazi, Nabeel Khan; Dumat, Camille; Rashid, Muhammad Imtiaz

2017-07-01

Chromium (Cr) is a potentially toxic heavy metal which does not have any essential metabolic function in plants. Various past and recent studies highlight the biogeochemistry of Cr in the soil-plant system. This review traces a plausible link among Cr speciation, bioavailability, phytouptake, phytotoxicity and detoxification based on available data, especially published from 2010 to 2016. Chromium occurs in different chemical forms (primarily as chromite (Cr(III)) and chromate (Cr(VI)) in soil which vary markedly in term of their biogeochemical behavior. Chromium behavior in soil, its soil-plant transfer and accumulation in different plant parts vary with its chemical form, plant type and soil physico-chemical properties. Soil microbial community plays a key role in governing Cr speciation and behavior in soil. Chromium does not have any specific transporter for its uptake by plants and it primarily enters the plants through specific and non-specific channels of essential ions. Chromium accumulates predominantly in plant root tissues with very limited translocation to shoots. Inside plants, Cr provokes numerous deleterious effects to several physiological, morphological, and biochemical processes. Chromium induces phytotoxicity by interfering plant growth, nutrient uptake and photosynthesis, inducing enhanced generation of reactive oxygen species, causing lipid peroxidation and altering the antioxidant activities. Plants tolerate Cr toxicity via various defense mechanisms such as complexation by organic ligands, compartmentation into the vacuole, and scavenging ROS via antioxidative enzymes. Consumption of Cr-contaminated-food can cause human health risks by inducing severe clinical conditions. Therefore, there is a dire need to monitor biogeochemical behavior of Cr in soil-plant system. Copyright © 2017 Elsevier Ltd. All rights reserved.

Effects of biochar on availability and plant uptake of heavy metals - A meta-analysis.

PubMed

Chen, De; Liu, Xiaoyu; Bian, Rongjun; Cheng, Kun; Zhang, Xuhui; Zheng, Jufeng; Joseph, Stephen; Crowley, David; Pan, Genxing; Li, Lianqing

2018-05-24

Biochar can be an effective amendment for immobilizing heavy metals in contaminated soils but has variable effects depending on its chemical and physical properties and those of the treated soil. To investigate the range of biochar's effects on heavy metal accumulation in plants in responses to the variation of soil, biochar and plant, we carried out a meta-analysis of the literature that was published before March 2016. A total of 1298 independent observations were collected from 74 published papers. Results showed that across all studies, biochar addition to soils resulted in average decreases of 38, 39, 25 and 17%, respectively, in the accumulation of Cd, Pb, Cu and Zn in plant tissues. The effect of biochar on heavy metal concentrations in plants varied depending on soil properties, biochar type, plant species, and metal contaminants. The largest decreases in plant heavy metal concentrations occurred in coarse-textured soils amended with biochar. Biochar had a relatively small effect on plant tissue Pb concentrations, but a large effect on plant Cu concentrations when applied to alkaline soils. Plant uptake of Pb, Cu and Zn was less in soils with higher organic carbon contents. Manure-derived biochar was the most effective for reducing Cd and Pb concentrations in plants as compared to biochars derived from other feedstock. Biochar having a high pH and used at high application rates resulted in greater decreases in plant heavy metal uptake. The meta-analysis provides useful guidelines on the range of effects that can be anticipated for different biochar materials in different plant-soil systems. Copyright © 2018 Elsevier Ltd. All rights reserved.

Cadmium and zinc in vegetation and litter of a voluntary woodland that has developed on contaminated sediment-derived soil.

PubMed

Lepp, Nicholas W; Madejón, Paula

2007-01-01

Vegetation that develops spontaneously on metal-contaminated soils presents an opportunity to evaluate both metal bioavailability and the risks posed to biota. The behavior of Cd and Zn in the species of a spontaneously developed woodland, colonizing a canal embankment, has been investigated. Nitric-acid-extractable metal concentrations in the sediment-derived substrate ranged between 5.0 to 376 mg kg(-1)dry wt. Cd and 83.0 to 784 mg kg(-1)dry wt. Zn. The woodland is dominated by Willow (Salix) species. Salix caprea selectively accumulated Cd in all stem tissues, in contrast to S. viminalis, which regulated tissue Cd content. Both species showed an effective regulation of tissue Zn. Cadmium uptake by S. caprea was correlated with differences in soil pH, while Zn uptake was not. There was no relationship between tissue metal concentrations and soil metal nitric acid-extractable concentrations. Other aspects of ecosystem function appeared unaffected by the elevated Cd flux in S. caprea; leaf litter organisms present represented all major groups and there was no accumulation of organic matter. The woodland represents a potentially sustainable option for remediating a low value site with difficult access that does not involve removal of the contaminated material to a landfill or making a permanent inert cover.

Predicting arsenic bioavailability to hyperaccumulator Pteris vittata in arsenic-contaminated soils.

PubMed

Gonzaga, Maria Isidória Silva; Ma, Lena Q; Pacheco, Edson Patto; dos Santos, Wallace Melo

2012-12-01

Using chemical extraction to evaluate plant arsenic availability in contaminated soils is important to estimate the time frame for site cleanup during phytoremediation. It is also of great value to assess As mobility in soil and its risk in environmental contamination. In this study, four conventional chemical extraction methods (water, ammonium sulfate, ammonium phosphate, and Mehlich III) and a new root-exudate based method were used to evaluate As extractability and to correlate it with As accumulation in P. vittata growing in five As-contaminated soils under greenhouse condition. The relationship between different soil properties, and As extractability and plant As accumulation was also investigated. Arsenic extractability was 4.6%, 7.0%, 18%, 21%, and 46% for water, ammonium sulfate, organic acids, ammonium phosphate, and Mehlich III, respectively. Root exudate (organic acids) solution was suitable for assessing As bioavailability (81%) in the soils while Mehlich III (31%) overestimated the amount of As taken up by plants. Soil organic matter, P and Mg concentrations were positively correlated to plant As accumulation whereas Ca concentration was negatively correlated. Further investigation is needed on the effect of Ca and Mg on As uptake by P. vittata. Moreover, additional As contaminated soils with different properties should be tested.

Deposition parameterizations for the Industrial Source Complex (ISC3) model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wesely, Marvin L.; Doskey, Paul V.; Shannon, J. D.

2002-06-01

Improved algorithms have been developed to simulate the dry and wet deposition of hazardous air pollutants (HAPs) with the Industrial Source Complex version 3 (ISC3) model system. The dry deposition velocities (concentrations divided by downward flux at a specified height) of the gaseous HAPs are modeled with algorithms adapted from existing dry deposition modules. The dry deposition velocities are described in a conventional resistance scheme, for which micrometeorological formulas are applied to describe the aerodynamic resistances above the surface. Pathways to uptake at the ground and in vegetative canopies are depicted with several resistances that are affected by variations inmore » air temperature, humidity, solar irradiance, and soil moisture. The role of soil moisture variations in affecting the uptake of gases through vegetative plant leaf stomata is assessed with the relative available soil moisture, which is estimated with a rudimentary budget of soil moisture content. Some of the procedures and equations are simplified to be commensurate with the type and extent of information on atmospheric and surface conditions available to the ISC3 model system user. For example, standardized land use types and seasonal categories provide sets of resistances to uptake by various components of the surface. To describe the dry deposition of the large number of gaseous organic HAPS, a new technique based on laboratory study results and theoretical considerations has been developed providing a means of evaluating the role of lipid solubility in uptake by the waxy outer cuticle of vegetative plant leaves.« less

Storage and Bioavailability of Molybdenum in Soils Increased by Organic Matter Complexation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wichard, T.; Mishra, B; Myneni, S

2009-01-01

The micronutrient molybdenum is a necessary component of the nitrogen-fixing enzyme nitrogenase1, 2. Molybdenum is very rare in soils, and is usually present in a highly soluble form, making it susceptible to leaching3, 4. However, it is generally thought that molybdenum attaches to mineral surfaces in acidic soils; this would prevent its escape into the groundwater, but would also impede uptake by microbes3. Here we use X-ray spectroscopy to examine the chemical speciation of molybdenum in soil samples from forests in Arizona and New Jersey. We show that in the leaf litter layer, most of the molybdenum forms strong complexesmore » with plant-derived tannins and tannin-like compounds; molybdenum binds to these organic ligands across a wide pH range. In deeper soils, molybdenum binds to both iron oxides and natural organic matter. We suggest that the molybdenum bound to organic matter can be captured by small complexing agents that are released by nitrogen-fixing bacteria; the molybdenum can then be incorporated into nitrogenase. We conclude that the binding of molybdenum to natural organic matter helps prevent leaching of molybdenum, and is thus a critical step in securing new nitrogen in terrestrial ecosystems.« less

Immobilization of copper by biochar in Cu-enriched agricultural soils depends on interactions with soil organic carbon

NASA Astrophysics Data System (ADS)

Mlinkov, Slađana; Zehetner, Franz; Rosner, Franz; Dersch, Georg; Soja, Gerhard

2017-04-01

The appearance of downy mildew (Plasmopara viticola) in European vineyards of the 19th century was the starting point for the search of effective fungicides to avoid severe yield losses. Copper has been found as an important ingredient for several fungicides that have been used in agriculture and horticulture. For organic viticulture, several diseases can only be antagonized with Cu-containing fungicides as the application of organic fungicides is not permitted. This long-lasting dependence on Cu-fungicides has led to a gradual Cu enrichment of vineyard soils in traditional wine-growing areas, locally exceeding 300 mg/kg. Although these concentrations do not affect the vines or wine quality, they may impair soil microbiological functions in the top soil layer or the root growth of green cover plants. Therefore, measures are demanded that reduce the bioavailability of copper, thereby reducing the ecotoxicological effects. The use of biochar and compost as soil amendment has been suggested as a strategy to immobilize Cu and reduce the exchangeable fractions. In our study we have tested the hypothesis that biochar immobilizes the bioavailability of Cu for soil cover crops and reduces soil pore water concentrations. This study had the objective to test the interactions of compost and biochar with respect to Cu immobilization in vineyard soils. A Cu-enriched vineyard soil (250 mg Cu kg-1) was analyzed both in greenhouse and field experiments. In both experiments, soil with or without biochar and/or compost and mixtures of the two components were used. In the greenhouse experiments, was used as test plant Lolium multiflorum for Cu uptake; in the field, Lolium perenne and Trifolium repens were analyzed. Greenhouse experiment: Soil pore water concentrations showed clearer differences in Cu concentration than Lolium multiflorum shoots. Compost increased dissolved organic carbon (DOC) and Cu in soil pore water and biochar reduced it significantly. The mixtures of compost and biochar produced intermediate results. Field experiment: Cu concentrations in the roots of soil cover crops were higher than above-ground parts. Biochar as soil additive (4 kg m-2) and a biochar-compost mixture at a high application rate (10 kg m-2) reduced the Cu uptake into the roots. Compost without biochar or the mixture at a lower dose (4 kg m-2) either had no or even a mobilizing effect on Cu. Apparently the effects of compost and biochar are opposite. Biochar is only able to exert an immobilizing effect if soil organic carbon content is not too high; otherwise only very high biochar addition rates can counteract the effect of compost. .

The role of bacterial consortium and organic amendment in Cu and Fe isotope fractionation in plants on a polluted mine site.

PubMed

Pérez Rodríguez, Nathalie; Langella, Francesca; Rodushkin, Ilia; Engström, Emma; Kothe, Erika; Alakangas, Lena; Öhlander, Björn

2014-01-01

Copper and iron isotope fractionation by plant uptake and translocation is a matter of current research. As a way to apply the use of Cu and Fe stable isotopes in the phytoremediation of contaminated sites, the effects of organic amendment and microbial addition in a mine-spoiled soil seeded with Helianthus annuus in pot experiments and field trials were studied. Results show that the addition of a microbial consortium of ten bacterial strains has an influence on Cu and Fe isotope fractionation by the uptake and translocation in pot experiments, with an increase in average of 0.99 ‰ for the δ(65)Cu values from soil to roots. In the field trial, the amendment with the addition of bacteria and mycorrhiza as single and double inoculation enriches the leaves in (65)Cu compared to the soil. As a result of the same trial, the δ(56)Fe values in the leaves are lower than those from the bulk soil, although some differences are seen according to the amendment used. Siderophores, possibly released by the bacterial consortium, can be responsible for this change in the Cu and Fe fractionation. The overall isotopic fractionation trend for Cu and Fe does not vary for pot and field experiments with or without bacteria. However, variations in specific metabolic pathways related to metal-organic complexation and weathering can modify particular isotopic signatures.

Ractopamine up take by alfalfa (Medicago sativa) and wheat (Triticum aestivum) from soil.

PubMed

Shelver, Weilin L; DeSutter, Thomas M

2015-08-01

Ractopamine is a beta adrenergic agonist used as a growth promoter in swine, cattle and turkeys. To test whether ractopamine has the potential to accumulate in plants grown in contaminated soil, a greenhouse study was conducted with alfalfa (Medicago sativa) and wheat (Triticum aestivum) grown in two soils having different concentrations of organic matter (1.3% and 2.1%), amended with 0, 0.5, and 10 μg/g of ractopamine. Plant growth ranged from 2.7 to 8.8 g dry weight (dw) for alfalfa, and 8.7 to 40 g dw for wheat and was generally greater in the higher organic matter content soil. The uptake of ractopamine in plant tissues ranged from non-detectable to 897 ng/g and was strongly dependent on soil ractopamine concentration across soil and plant tissue. When adjusted to the total fortified quantities, the amount of ractopamine taken up by the plant tissue was low, <0.01% for either soil. Copyright © 2015. Published by Elsevier B.V.

The Effect of Vegetation on Soil Water Infiltration and Retention Capacity by Improving Soil Physiochemical Property in Semi-arid Grassland

NASA Astrophysics Data System (ADS)

A, Y.; Wang, G.

2017-12-01

Water shortage is the main limiting factor for semi-arid grassland development. However, the grassland are gradually degraded represented by species conversion, biomass decrease and ecosystem structure simplification under the influence of human activity. Soil water characteristics such as moisture, infiltration and conductivity are critical variables affecting the interactions between soil parameters and vegetation. In this study, Cover, Height, Shannon-Wiener diversity index, Pielou evenness index and Richness index are served as indexes of vegetation productivity and community structure. And saturated hydraulic conductivity (Ks) and soil moisture content are served as indexes of soil water characters. The interaction between vegetation and soil water is investigated through other soil parameters, such as soil organic matter content at different vertical depths and in different degradation area (e.g., initial, transition and degraded plots). The results show that Ks significantly controlled by soil texture other than soil organic matter content. So the influence of vegetation on Ks through increasing soil organic content (SOM) might be slight. However, soil moisture content (SMC) appeared significantly positive relationship with SOM and silt content and negative relationship with sand content at all depth, significantly. This indicated that capacity of soil water storage was influenced both by soil texture and organic matter. In addition, the highest correlation coefficient of SMC was with SOM at the sub-surficial soil layer (20 40 cm). At the depth of 20 40 cm, the soil water content was relatively steady which slightly influenced by precipitation and evaporation. But it significantly influenced by soil organic matter content which related to vegetation. The correlation coefficient between SOM and SMC at topsoil layer (0 20 cm) was lowest (R2=0.36, p<0.01), which indicated the influence of vegetation on soil water content not only by soil organic matter content but also the other influential factors, such as the root water uptake, precipitation and evaporation.

Field demonstration of age dependent increase in lead phytoextraction by Pelargonium cultivar

NASA Astrophysics Data System (ADS)

Shahid, Muhammad; Arshad, Muhammad; Pinelli, Eric; Alric, Alain; Kaemmerer, Michel; Pradere, Philippe; Dumat, Camille

2013-04-01

Unnecessary for living organisms, lead (Pb) is one of the major widespread toxic metals found in the environment with potential danger to human health and to ecosystems (Shahid et al. 2012). Lead is known to induce a broad range of toxic effects to living organism, including those that are morphological, physiological and biochemical in origin (Pourrut et al. 2011). A field study was carried out in the vicinity of Pb recycling plant near Toulouse-France, and contaminated by atmospheric fallouts to evaluate lead extraction and uptake efficiency of hyperaccumulater Attar of Roses Pelargonium cultivar. It was found that Attar of Roses has ability to accumulate (8644 mgPb/kg DW plant) and survive on highly contaminated acidic soil (39250 mg kg-1 of total Pb) without any morpho-phytotoxicity symptoms. Moreover Attar showed increased extraction of lead from bulk soil to rhizosphere through Pb mobilization and ultimately increased uptake by roots and translocation to shoots. The studied contaminated soil could be cleaned up in few years by planting hyperaccumulater Attar of Rose for longer time period. Under optimum fertlization, irrigation and use of natural or synthetic chelates (EDTA, LMOWA, humic substances etc.) along with old Attar of rose plants, time requires for complete remediation of contaminated site can be reduced to practically applicable time period. Moreover, the use of Pelargonium for remediation has several additional practical, esthetical and economic advantages. The extraction of value-added essential oils from harvested biomass could offset the cost of deploying phytoremediation and renders it as a viable approach for remediating highly contaminated soils, on large scale. Keywords: metal uptake, Pelargonium, phytoremediation, cultivar, soil-plant transfer and kinetic. References Pourrut, B., Shahid, M., Dumat, C., Winterton, P., Pinelli, E., 2011a. Lead uptake, toxicity and detoxification in plants. Rev. Environ. Contam. Toxicol. 213, 113-136. Shahid, M., Arshad, M., Kaemmerer, M., Pinelli, E., Probst, A., Baque, D., Pradere, P., Dumat, C., 2012a. Long term field metal extraction by pelargonium: Phytoextraction efficiency in relation with plant maturity. Inter. J. Phytorem. 14, 493-505.

Influence of soil mercury concentration and fraction on bioaccumulation process of inorganic mercury and methylmercury in rice (Oryza sativa L.).

PubMed

Zhou, Jun; Liu, Hongyan; Du, Buyun; Shang, Lihai; Yang, Junbo; Wang, Yusheng

2015-04-01

Recent studies showed that rice is the major pathway for methylmercury (MeHg) exposure to inhabitants in mercury (Hg) mining areas in China. There is, therefore, a concern regarding accumulation of Hg in rice grown in soils with high Hg concentrations. A soil pot experimental study was conducted to investigate the effects of Hg-contaminated soil on the growth of rice and uptake and speciation of Hg in the rice. Our results imply that the growth of rice promotes residual fraction of Hg transforming to organic-bound fraction in soil and increased the potential risks of MeHg production. Bioaccumulation factors deceased for IHg but relatively stabilized for MeHg with soil total mercury (THg) increasing. IHg in soil was the major source of Hg in the root and stalk, but leaf was contributed by Hg from both atmosphere and soil. Soluble and exchangeable Hg fraction can predict the bioavailability of IHg and MeHg in soils, and that can provide quantitative description of the rate of uptake of the bioavailable Hg. Soluble and exchangeable Hg fraction in paddy soil exceeding 0.0087 mg kg(-1) may cause THg concentration in rice grain above the permissible limit standard, and MeHg concentration in paddy soil more than 0.0091 mg kg(-1) may have the health risks to humans.

Accumulation, availability, and uptake of heavy metals in a red soil after 22-year fertilization and cropping.

PubMed

Zhou, Shiwei; Liu, Jing; Xu, Minggang; Lv, Jialong; Sun, Nan

2015-10-01

Fertilization is important to increase crop yields, but long-term application of fertilizers probably aggravated the risk of heavy metals in acidic soils. In this study, the effect of 22-year fertilization and cropping on accumulation, availability, and uptake of heavy metals in red soil was investigated. The results showed that pig manure promoted significantly cadmium (Cd) accumulation (average 1.1 mg kg(-1)), nearly three times higher than national soil standards and, thus, increased metal availability. But the enrichment of heavy metals decreased remarkably by 50.5 % under manure fertilization, compared with CK (control without fertilization). On the contrary, chemical fertilizers increased greatly lead (Pb) availability and Cd activity; in particular, exceeding 85 % of soil Cd became available to plant under N (nitrogen) treatment during 9-16 years of fertilization, which correspondingly increased their enrichment by 29.5 %. Long-term application of chemical fertilizers caused soil acidification and manure fertilization led to the increase in soil pH, soil organic matter (SOM), and available phosphorus (Olsen P), which influenced strongly metal behavior in red soil, and their effect had extended to deeper soil layer (20∼40 cm). It is advisable to increase application of manure alone with low content of heavy metals or in combination with chemical fertilizers to acidic soils in order to reduce toxic metal risk.

Relationship between root water uptake and soil respiration: A modeling perspective

NASA Astrophysics Data System (ADS)

Teodosio, Bertrand; Pauwels, Valentijn R. N.; Loheide, Steven P.; Daly, Edoardo

2017-08-01

Soil moisture affects and is affected by root water uptake and at the same time drives soil CO2 dynamics. Selecting root water uptake formulations in models is important since this affects the estimation of actual transpiration and soil CO2 efflux. This study aims to compare different models combining the Richards equation for soil water flow to equations describing heat transfer and air-phase CO2 production and flow. A root water uptake model (RWC), accounting only for root water compensation by rescaling water uptake rates across the vertical profile, was compared to a model (XWP) estimating water uptake as a function of the difference between soil and root xylem water potential; the latter model can account for both compensation (XWPRWC) and hydraulic redistribution (XWPHR). Models were compared in a scenario with a shallow water table, where the formulation of root water uptake plays an important role in modeling daily patterns and magnitudes of transpiration rates and CO2 efflux. Model simulations for this scenario indicated up to 20% difference in the estimated water that transpired over 50 days and up to 14% difference in carbon emitted from the soil. The models showed reduction of transpiration rates associated with water stress affecting soil CO2 efflux, with magnitudes of soil CO2 efflux being larger for the XWPHR model in wet conditions and for the RWC model as the soil dried down. The study shows the importance of choosing root water uptake models not only for estimating transpiration but also for other processes controlled by soil water content.

[Effects of supplemental irrigation by monitoring soil moisture on the'water-nitrogen utilization of wheat and soil NO3(-)-N leaching].

PubMed

Shi, Yu; Yu, Zhen-wen; He, Jian-ning; Zhang, Yong-li

2016-02-01

Field experiments were conducted during 2012-2014 wheat growing seasons. With no irrigation in the whole stage (WO) treatment as control, three supplemental irrigation treatments were designed based on average relative soil moisture contents at 0-140-cm layer, at jointing and anthesis stages (65% for treatment W1 ; 70% for treatment W2; 75% for treatment W3; respectively), to examine effects of supplemental irrigation on nitrogen accumulation and translocation, grain yield, water use efficiency, and soil nitrate nitrogen leaching in wheat field., Soil water consumption amount, the percentage of soil water consumption and water irrigation to total water consumption in W2 were higher, and soil water consumption of W2 in 100-140 cm soil layer was also higher. The nitrogen accumulation before anthesis and after anthesis were presented as W2, W3>W1>W0, the nitrogen accumulation in vegetative organs at maturity as W3>W2>Wl>W0, and the nitrogen translocation from vegetative organs to grain and the nitrogen accumulation in grain at maturity as W2> W3>W1>W0. At maturity, soil NO3(-)-N content in 0-60 cm soil layer was presented. as W0>W1>W2>W3, that in 80-140 cm soil layer was significantly higher in W3 than in the other treatments, and no significant difference was found in 140-200 cm soil layer among all treatments. W treatment obtained the highest grain yield, water use efficiency, nitrogen uptake efficiency and partial productivity of applied nitrogen. As far as grain yield, water use efficiency, nitrogen uptake efficiency and soil NO3(1)-N leaching were concerned, the W2 regime was the optimal irrigation treatment in this experiment.

Elevated temperature altered photosynthetic products in wheat seedlings and organic compounds and biological activity in rhizopshere soil under cadmium stress.

PubMed

Jia, Xia; Zhao, YongHua; Wang, WenKe; He, Yunhua

2015-09-23

The objective of this study was to investigate the effects of slightly elevated atmospheric temperature in the spring on photosynthetic products in wheat seedlings and on organic compounds and biological activity in rhizosphere soil under cadmium (Cd) stress. Elevated temperature was associated with increased soluble sugars, reducing sugars, starch, and total sugars, and with decreased amino acids in wheat seedlings under Cd stress. Elevated temperature improved total soluble sugars, free amino acids, soluble phenolic acids, and organic acids in rhizosphere soil under Cd stress. The activity of amylase, phenol oxidase, invertase, β-glucosidase, and l-asparaginase in rhizosphere soil was significantly improved by elevated temperature under Cd stress; while cellulase, neutral phosphatase, and urease activity significantly decreased. Elevated temperature significantly improved bacteria, fungi, actinomycetes, and total microorganisms abundance and fluorescein diacetate activity under Cd stress. In conclusion, slightly elevated atmospheric temperature in the spring improved the carbohydrate levels in wheat seedlings and organic compounds and biological activity in rhizosphere soil under Cd stress in the short term. In addition, elevated atmospheric temperature in the spring stimulated available Cd by affecting pH, DOC, phenolic acids, and organic acids in rhizosphere soil, which resulted in the improvement of the Cd uptake by wheat seedlings.

Elevated temperature altered photosynthetic products in wheat seedlings and organic compounds and biological activity in rhizopshere soil under cadmium stress

PubMed Central

Jia, Xia; Zhao, YongHua; Wang, WenKe; He, Yunhua

2015-01-01

The objective of this study was to investigate the effects of slightly elevated atmospheric temperature in the spring on photosynthetic products in wheat seedlings and on organic compounds and biological activity in rhizosphere soil under cadmium (Cd) stress. Elevated temperature was associated with increased soluble sugars, reducing sugars, starch, and total sugars, and with decreased amino acids in wheat seedlings under Cd stress. Elevated temperature improved total soluble sugars, free amino acids, soluble phenolic acids, and organic acids in rhizosphere soil under Cd stress. The activity of amylase, phenol oxidase, invertase, β-glucosidase, and l-asparaginase in rhizosphere soil was significantly improved by elevated temperature under Cd stress; while cellulase, neutral phosphatase, and urease activity significantly decreased. Elevated temperature significantly improved bacteria, fungi, actinomycetes, and total microorganisms abundance and fluorescein diacetate activity under Cd stress. In conclusion, slightly elevated atmospheric temperature in the spring improved the carbohydrate levels in wheat seedlings and organic compounds and biological activity in rhizosphere soil under Cd stress in the short term. In addition, elevated atmospheric temperature in the spring stimulated available Cd by affecting pH, DOC, phenolic acids, and organic acids in rhizosphere soil, which resulted in the improvement of the Cd uptake by wheat seedlings. PMID:26395070

Elevated temperature altered photosynthetic products in wheat seedlings and organic compounds and biological activity in rhizopshere soil under cadmium stress

NASA Astrophysics Data System (ADS)

Jia, Xia; Zhao, Yonghua; Wang, Wenke; He, Yunhua

2015-09-01

The objective of this study was to investigate the effects of slightly elevated atmospheric temperature in the spring on photosynthetic products in wheat seedlings and on organic compounds and biological activity in rhizosphere soil under cadmium (Cd) stress. Elevated temperature was associated with increased soluble sugars, reducing sugars, starch, and total sugars, and with decreased amino acids in wheat seedlings under Cd stress. Elevated temperature improved total soluble sugars, free amino acids, soluble phenolic acids, and organic acids in rhizosphere soil under Cd stress. The activity of amylase, phenol oxidase, invertase, β-glucosidase, and L-asparaginase in rhizosphere soil was significantly improved by elevated temperature under Cd stress; while cellulase, neutral phosphatase, and urease activity significantly decreased. Elevated temperature significantly improved bacteria, fungi, actinomycetes, and total microorganisms abundance and fluorescein diacetate activity under Cd stress. In conclusion, slightly elevated atmospheric temperature in the spring improved the carbohydrate levels in wheat seedlings and organic compounds and biological activity in rhizosphere soil under Cd stress in the short term. In addition, elevated atmospheric temperature in the spring stimulated available Cd by affecting pH, DOC, phenolic acids, and organic acids in rhizosphere soil, which resulted in the improvement of the Cd uptake by wheat seedlings.

Species turnover (β-diversity) in ectomycorrhizal fungi linked to NH4+ uptake capacity.

PubMed

Kranabetter, J M; Hawkins, B J; Jones, M D; Robbins, S; Dyer, T; Li, T

2015-12-01

Ectomycorrhizal (EcM) fungal communities may be shaped by both deterministic and stochastic processes, potentially influencing ecosystem development and function. We evaluated community assembly processes for EcM fungi of Pseudotsuga menziesii among 12 sites up to 400 km apart in southwest British Columbia (Canada) by investigating species turnover (β-diversity) in relation to soil nitrogen (N) availability and physical distance. We then examined functional traits for an N-related niche by quantifying net fluxes of NH4+, NO3- and protons on excised root tips from three contrasting sites using a microelectrode ion flux measurement system. EcM fungal communities were well aligned with soil N availability and pH, with no effect of site proximity (distance-decay curve) on species assemblages. Species turnover was significant (β(1/2) = 1.48) along soil N gradients, with many more Tomentella species on high N than low N soils, in contrast to Cortinarius species. Ammonium uptake was greatest in the spring on the medium and rich sites and averaged over 190 nmol/m(2)/s for Tomentella species. The lowest uptake rates of NH4+ were by nonmycorrhizal roots of axenically grown seedlings (10 nmol/m(2)/s), followed by Cortinarius species (60 nmol/m(2)/s). EcM roots from all sites displayed only marginal uptake of nitrate (8.3 nmol/m(2)/s). These results suggest NH4+ uptake capacity is an important functional trait influencing the assembly of EcM fungal communities. The diversity of EcM fungal species across the region arguably provides critical belowground adaptations to organic and inorganic N supply that are integral to temperate rainforest ecology. © 2015 John Wiley & Sons Ltd.

Soil geochemistry and digestive solubilization control mercury bioaccumulation in the earthworm Pheretima guillemi.

PubMed

Dang, Fei; Zhao, Jie; Greenfield, Ben K; Zhong, Huan; Wang, Yujun; Yang, Zhousheng; Zhou, Dongmei

2015-07-15

Mercury presents a potential risk to soil organisms, yet our understanding of mercury bioaccumulation in soil dwelling organisms is limited. The influence of soil geochemistry and digestive processes on both methylmercury (MeHg) and total mercury (THg) bioavailability to earthworms (Pheretima guillemi) was evaluated in this study. Earthworms were exposed to six mercury-contaminated soils with geochemically contrasting properties for 36 days, and digestive fluid was concurrently collected to solubilize soil-associated mercury. Bioaccumulation factors were 7.5-31.0 and 0.2-0.6 for MeHg and THg, respectively, and MeHg accounted for 17-58% of THg in earthworm. THg and MeHg measured in soils and earthworms were negatively associated with soil total organic carbon (TOC). Earthworm THg and MeHg also increased with increasing soil pH. The proportion of MeHg and THg released into the digestive fluid (digestive solubilizable mercury, DSM) was 8.3-18.1% and 0.4-1.3%, respectively. The greater solubilization of MeHg by digestive fluid than CaCl2, together with a biokinetic model-based estimate of dietary MeHg uptake, indicated the importance of soil ingestion for MeHg bioaccumulation in earthworms. Copyright © 2015 Elsevier B.V. All rights reserved.

Plutonium Immobilization and Mobilization by Soil Organic Matter

DOE Office of Scientific and Technical Information (OSTI.GOV)

Santschi, Peter H.; Schwehr, Kathleen A.; Xu, Chen

The human and environmental risks associated with Pu disposal, remediation, and nuclear accidents scenarios stems mainly from the very long half-lives of several of its isotopes. The SRS, holding one-third of the nation’s Pu inventory, has a long-term stewardship commitment to investigation of Pu behavior in the groundwater and downgradient vast wetlands. Pu is believed to be essentially immobile due to its low solubility and high particle reactivity to mineral phase or natural organic matter (NOM). For example, in sediments collected from a region of SRS, close to a wetland and a groundwater plume, 239,240Pu concentrations suggest immobilization by NOMmore » compounds, as Pu correlate with NOM contents. Micro-SXRF data indicate, however, that Pu does not correlate with Fe. However, previous studies reported Pu can be transported several kilometers in surface water systems, in the form of a colloidal organic matter carrier, through wind/water interactions. The role of NOM in both immobilizing or re-mobilizing Pu thus has been demonstrated. Our results indicate that more Pu (IV) than (V) was bound to soil colloidal organic matter (COM), amended at far-field concentrations. Contrary to expectations, the presence of NOM in the F-Area soil did not enhance Pu fixation to the organic-rich soil, when compared to the organic-poor soil or the mineral phase from the same soil source, due to the formation of COM-bound Pu. Most importantly, Pu uptake by organic-rich soil decreased with increasing pH because more NOM in the colloidal size desorbed from the particulate fraction at elevated pH, resulting in greater amounts of Pu associated with the COM fraction. This is in contrast to previous observations with low-NOM sediments or minerals, which showed increased Pu uptake with increasing pH levels. This demonstrates that despite Pu immobilization by NOM, COM can convert Pu into a more mobile form. Sediment Pu concentrations in the SRS F-Area wetland were correlated to total organic carbon and total nitrogen contents and even more strongly to hydroxamate siderophore (HS) concentrations. The HS were detected in the particulate or colloidal phases of the sediments but not in the low molecular fractions (< 1000 Da). Macromolecules which scavenged the majority of the potentially mobile Pu were further separated from the bulk mobile organic matter fraction (“water extract”) via isoelectric focusing experiment (IEF). An ESI FTICR-MS spectral comparison of the IEF extract and a siderophore standard (desferrioxamine; DFO) suggested the presence of HS functionalities in the IEF extract.« less

Nitrogen dynamics in Turbic Cryosols from Siberia and Greenland.

PubMed

Wild, Birgit; Schnecker, Jörg; Bárta, Jiří; Capek, Petr; Guggenberger, Georg; Hofhansl, Florian; Kaiser, Christina; Lashchinsky, Nikolaj; Mikutta, Robert; Mooshammer, Maria; Santrůčková, Hana; Shibistova, Olga; Urich, Tim; Zimov, Sergey A; Richter, Andreas

2013-12-01

Turbic Cryosols (permafrost soils characterized by cryoturbation, i.e., by mixing of soil layers due to freezing and thawing) are widespread across the Arctic, and contain large amounts of poorly decomposed organic material buried in the subsoil. This cryoturbated organic matter exhibits retarded decomposition compared to organic material in the topsoil. Since soil organic matter (SOM) decomposition is known to be tightly linked to N availability, we investigated N transformation rates in different soil horizons of three tundra sites in north-eastern Siberia and Greenland. We measured gross rates of protein depolymerization, N mineralization (ammonification) and nitrification, as well as microbial uptake of amino acids and NH 4 + using an array of 15 N pool dilution approaches. We found that all sites and horizons were characterized by low N availability, as indicated by low N mineralization compared to protein depolymerization rates (with gross N mineralization accounting on average for 14% of gross protein depolymerization). The proportion of organic N mineralized was significantly higher at the Greenland than at the Siberian sites, suggesting differences in N limitation. The proportion of organic N mineralized, however, did not differ significantly between soil horizons, pointing to a similar N demand of the microbial community of each horizon. In contrast, absolute N transformation rates were significantly lower in cryoturbated than in organic horizons, with cryoturbated horizons reaching not more than 32% of the transformation rates in organic horizons. Our results thus indicate a deceleration of the entire N cycle in cryoturbated soil horizons, especially strongly reduced rates of protein depolymerization (16% of organic horizons) which is considered the rate-limiting step in soil N cycling.

Seasonal reversal of temperature-moisture response of net carbon exchange of biocrusted soils in a cool desert ecosystem.

NASA Astrophysics Data System (ADS)

Tucker, C.; Reed, S.; Howell, A.

2017-12-01

Carbon cycling associated with biological soil crusts, which occur in interspaces between vascular plants in drylands globally, may be an important part of the coupled climate-carbon cycle of the Earth system. A major challenge to understanding CO2 fluxes in these systems is that much of the biotic and biogeochemical activity occurs in the upper few mm of the soil surface layer (i.e., the `mantle of fertility'), which exhibits highly dynamic and difficult to measure temperature and moisture fluctuations. Here, we report data collected in a cool desert ecosystem over one year using a multi-sensor approach to simultaneously measuring temperature and moisture of the biocrust surface layer (0-2 mm), and the deeper soil profile (5-20 cm), concurrent with automated measurement of surface soil CO2 effluxes. Our results illuminate robust relationships between microclimate and field CO2 pulses that have previously been difficult to detect and explain. The temperature of the biocrust surface layer was highly variable, ranging from minimum of -9 °C in winter to maximum of 77 °C in summer with a maximum diurnal range of 61 °C. Temperature cycles were muted deeper in the soil profile. During summer, biocrust and soils were usually hot and dry and CO2 fluxes were tightly coupled to pulse wetting events experienced at the biocrust surface, which consistently resulted in net CO2 efflux (i.e., respiration). In contrast, during the winter, biocrust and soils were usually cold and moist, and there was sustained net CO2 uptake via photosynthesis by biocrust organisms, although during cold dry periods CO2 fluxes were minimal. During the milder spring and fall seasons, short wetting events drove CO2 loss, while sustained wetting events resulted in net CO2 uptake. Thus, the upper and lower bounds of net CO2 exchange at a point in time were functions of the seasonal temperature regime, while the actual flux within those bounds was determined by the magnitude and duration of biocrust and soil wetting events. These patterns reflect both the low temperature sensitivity and slow initiation in response to wetting of photosynthesis compared to respiration by biocrust organisms. Our study highlights the importance of cool and cold periods for C uptake in biocrusted soils of the Colorado Plateau.

Assessing cadmium exposure risks of vegetables with plant uptake factor and soil property.

PubMed

Yang, Yang; Chang, Andrew C; Wang, Meie; Chen, Weiping; Peng, Chi

2018-07-01

Plant uptake factors (PUFs) are of great importance in human cadmium (Cd) exposure risk assessment while it has been often treated in a generic way. We collected 1077 pairs of vegetable-soil samples from production fields to characterize Cd PUFs and demonstrated their utility in assessing Cd exposure risks to consumers of locally grown vegetables. The Cd PUFs varied with plant species and pH and organic matter content of soils. Once normalized PUFs against soil parameters, the PUFs distributions were log-normal in nature. In this manner, the PUFs were represented by definable probability distributions instead of a deterministic figure. The Cd exposure risks were then assessed using the normalized PUF based on the Monte Carlo simulation algorithm. Factors affecting the extent of Cd exposures were isolated through sensitivity analyses. Normalized PUF would illustrate the outcomes for uncontaminated and slightly contaminated soils. Among the vegetables, lettuce was potentially hazardous for residents due to its high Cd accumulation but low Zn concentration. To protect 95% of the lettuce production from causing excessive Cd exposure risks, pH of soils needed to be 5.9 and above. Copyright © 2018 Elsevier Ltd. All rights reserved.

Ectomycorrhizal Fungal Protein Degradation Ability Predicted by Soil Organic Nitrogen Availability.

PubMed

Rineau, Francois; Stas, Jelle; Nguyen, Nhu H; Kuyper, Thomas W; Carleer, Robert; Vangronsveld, Jaco; Colpaert, Jan V; Kennedy, Peter G

2015-12-18

In temperate and boreal forest ecosystems, nitrogen (N) limitation of tree metabolism is alleviated by ectomycorrhizal (ECM) fungi. As forest soils age, the primary source of N in soil switches from inorganic (NH4 (+) and NO3 (-)) to organic (mostly proteins). It has been hypothesized that ECM fungi adapt to the most common N source in their environment, which implies that fungi growing in older forests would have greater protein degradation abilities. Moreover, recent results for a model ECM fungal species suggest that organic N uptake requires a glucose supply. To test the generality of these hypotheses, we screened 55 strains of 13 Suillus species with different ecological preferences for their in vitro protein degradation abilities. Suillus species preferentially occurring in mature forests, where soil contains more organic matter, had significantly higher protease activity than those from young forests with low-organic-matter soils or species indifferent to forest age. Within species, the protease activities of ecotypes from soils with high or low soil organic N content did not differ significantly, suggesting resource partitioning between mineral and organic soil layers. The secreted protease mixtures were strongly dominated by aspartic peptidases. Glucose addition had variable effects on secreted protease activity; in some species, it triggered activity, but in others, activity was repressed at high concentrations. Collectively, our results indicate that protease activity, a key ectomycorrhizal functional trait, is positively related to environmental N source availability but is also influenced by additional factors, such as carbon availability. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Inoculation with arbuscular mycorrhizae does not improve 137Cs uptake in crops grown in the Chernobyl region.

PubMed

Vinichuk, M; Mårtensson, A; Rosén, K

2013-12-01

Methods for cleaning up radioactive contaminated soils are urgently needed. In this study we investigated whether the use of arbuscular mycorrhizal (AM) fungi can improve (137)Cs uptake by crops. Barley, cucumber, perennial ryegrass, and sunflower were inoculated with AM fungi and grown in low-level radionuclide contaminated soils in a field experiment 70 km southwest of Chernobyl, Ukraine, during two successive years (2009-2010). Roots of barley, cucumber and sunflower plants were slightly or moderately infected with AM fungus and root infection frequency was negatively or non-correlated with (137)Cs uptake by plants. Roots of ryegrass were moderately infected with AM fungus and infection frequency was moderately correlated with (137)Cs uptake by ryegrass. The application of AM fungi to soil in situ did not enhance radionuclide plant uptake or biomass. The responsiveness of host plants and AM fungus combination to (137)Cs uptake varied depending on the soil, although mycorrhization of soil in the field was conditional and did not facilitate the uptake of radiocesium. The total amount of (137)Cs uptake by plants growing on inoculated soil was equal to amounts in plant cultivated on non-inoculated soil. Thus, the use of AM fungi in situ for bioremediation of soil contaminated with a low concentration of (137)Cs could not be recommended. Copyright © 2013 Elsevier Ltd. All rights reserved.

Effects of soil water availability on water fluxes in winter wheat

NASA Astrophysics Data System (ADS)

Cai, G.; Vanderborght, J.; Langensiepen, M.; Vereecken, H.

2014-12-01

Quantifying soil water availability in water-limited ecosystems on plant water use continues to be a practical problem in agronomy. Transpiration which represents plant water demand is closely in relation to root water uptake in the root zone and sap flow in plant stems. However, few studies have been concentrated on influences of soil moisture on root water uptake and sap flow in crops. This study was undertaken to investigate (i) whether root water uptake and sap flow correlate with the transpiration estimated by the Penman-Monteith model for winter wheat(Triticum aestivum), and (ii) for which soil water potentials in the root zone, the root water uptake and sap flow rates in crop stems would be reduced. Therefore, we measured sap flow velocities by an improved heat-balance approach (Langensiepen et al., 2014), calculated crop transpiration by Penman-Monteith model, and simulated root water uptake by HYDRUS-1D on an hourly scale for different soil water status in winter wheat. In order to assess the effects of soil water potential on root water uptake and sap flow, an average soil water potential was calculated by weighting the soil water potential at a certain depth with the root length density. The temporal evolution of root length density was measured using horizontal rhizotubes that were installed at different depths.The results showed that root water uptake and sap flow matched well with the computed transpiration by Penman-Monteith model in winter wheat when the soil water potential was not limiting root water uptake. However, low soil water content restrained root water uptake, especially when soil water potential was lower than -90 kPa in the top soil. Sap flow in wheat was not affected by the observed soil water conditions, suggesting that stomatal conductance was not sensitive to soil water potentials. The effect of drought stress on root water uptake and sap flow in winter wheat was only investigated in a short time (after anthesis). Further research could focus on a long time (e.g. from vegetation to maturity) effect under different soil water conditions, such as irrigated, sheltered and normal status. Langensiepen, M., Kupisch, M., Graf, A., Schmidt, M. and Ewert, F., 2014. Improving the stem heat balance method for determining sap-flow in wheat. Agricultural and Forest Meteorology, 186: 34-42.

Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance

NASA Astrophysics Data System (ADS)

Kuzyakov, Yakov; Xu, Xingliang

2014-05-01

Demand of all living organisms on the same nutrients forms the basis for interspecific competition between plants and microorganisms in soils. This competition is especially strong in the rhizosphere. To evaluate competitive and mutualistic interactions between plants and microorganisms and to analyse ecological consequences of these interactions, we analysed 424 data pairs from 41 15N-labelling studies that investigated 15N redistribution between roots and microorganisms. Calculated Michaelis-Menten kinetics based on Km (Michaelis constant) and Vmax (maximum uptake capacity) values from 77 studies on the uptake of nitrate, ammonia, and amino acids by roots and microorganisms clearly showed that, shortly after nitrogen (N) mobilization from soil organic matter and litter, microorganisms take up most N. Lower Km values of microorganisms suggest that they are especially efficient at low N concentrations, but can also acquire more N at higher N concentrations (Vmax) compared with roots. Because of the unidirectional flow of nutrients from soil to roots, plants are the winners for N acquisition in the long run. Therefore, despite strong competition between roots and microorganisms for N, a temporal niche differentiation reflecting their generation times leads to mutualistic relationships in the rhizosphere. This temporal niche differentiation is highly relevant ecologically because it: protects ecosystems from N losses by leaching during periods of slow or no root uptake; continuously provides roots with available N according to plant demand; and contributes to the evolutionary development of mutualistic interactions between roots and microorganisms.

Seasonal soil VOC exchange rates in a Mediterranean holm oak forest and their responses to drought conditions

NASA Astrophysics Data System (ADS)

Asensio, Dolores; Peñuelas, Josep; Ogaya, Romà; Llusià, Joan

Available information on soil volatile organic compound (VOC) exchange, emissions and uptake, is very scarce. We here describe the amounts and seasonality of soil VOC exchange during a year in a natural Mediterranean holm oak forest growing in Southern Catalonia. We investigated changes in soil VOC dynamics in drought conditions by decreasing the soil moisture to 30% of ambient conditions by artificially excluding rainfall and water runoff, and predicted the response of VOC exchange to the drought forecasted in the Mediterranean region for the next decades by GCM and ecophysiological models. The annual average of the total (detected) soil VOC and total monoterpene exchange rates were 3.2±3.2 and -0.4±0.3 μg m -2 h -1, respectively, in control plots. These values represent 0.003% of the total C emitted by soil at the study site as CO 2 whereas the annual mean of soil monoterpene exchange represents 0.0004% of total C. Total soil VOC exchange rates in control plots showed seasonal variations following changes in soil moisture and phenology. Maximum values were found in spring (17±8 μg m -2 h -1). Although there was no significant global effect of drought treatment on the total soil VOC exchange rates, annual average of total VOC exchange rates in drought plots resulted in an uptake rate (-0.5±1.8 μg m -2 h -1) instead of positive net emission rates. Larger soil VOC and monoterpene exchanges were measured in drought plots than in control plots in summer, which might be mostly attributable to autotrophic (roots) metabolism. The results show that the diversity and magnitude of monoterpene and VOC soil emissions are low compared with plant emissions, that they are driven by soil moisture, that they represent a very small part of the soil-released carbon and that they may be strongly reduced or even reversed into net uptakes by the predicted decreases of soil water availability in the next decades. In all cases, it seems that VOC fluxes in soil might have greater impact on soil ecology than on atmospheric chemistry.

[Effect of composting organic fertilizer supplies on hexachlorobenzene dechlorination in paddy soils].

PubMed

Liu, Cui-Ying; Jiang, Xin

2013-04-01

A rice pot experiment was conducted in two soils, Hydragric Acrisols (Ac) and Gleyi-Stagnic Anthrosols (An). Three treatments including control and additions of 1% or 2% composting organic fertilizer were designed for each soil. The objective of this research was to evaluate the reductive dechlorination of hexachlorobenzene (HCB) as affected by organic fertilizer supplies in planted paddy soils, and to analyze the relationship between methane production and HCB dechlorination. The results showed that the HCB residues were decreased by 28.6%-30.1% of the initial amounts in Ac, and 47.3% -61.0% in An after 18 weeks of experiment. The amount of HCB and its metabolite uptake by rice plants was only a few thousandths of the initial HCB amount in soils. The main product of HCB dechlorination was pentachlorobenzene (PeCB). The rates of HCB dechlorination in An were higher than those in Ac, which was mainly attributed to the higher pH and dissolved organic carbon (DOC) content of An. The applications of both 1% and 2% composting organic fertilizer showed significant inhibition on PeCB production after the 6th and 10th week in Ac and An, respectively. In both tested soils, no significant difference of PeCB production rates was observed between the applications of 1% and 2% composting organic fertilizer. The role of methanogenic bacteria in HCB dechlorination was condition-dependent.

The effect of soil properties on the toxicity and bioaccumulation of Ag nanoparticles and Ag ions in Enchytraeus crypticus.

PubMed

Topuz, Emel; van Gestel, Cornelis A M

2017-10-01

Standard natural Lufa soils (2.2, 2.3 and 5M) with different organic carbon contents (0.67-1.61%) and pH CaCl2 (5.5-7.3) were spiked with ionic Ag (AgNO 3 ) and polyvinyl pyrrolidone (AgNP-PVP) and citrate (AgNP-Cit) coated Ag nanoparticles (NPs). Enchytraeus crypticus were exposed for 21 days to assess effects on survival and reproduction. Soil, pore water and animals were analyzed for Ag. AgNP-Cit had a strong increasing effect on soil pH, leading to high enchytraeid mortality at concentrations higher than 60-100mg Ag/kg dry soil which made it impossible to determine the influence of soil properties on its toxicity. LC50s were lower for AgNO 3 than for AgNP-PVP (92-112 and 335-425mg Ag/kg dry soil, respectively) and were not affected by soil properties. AgNO 3 and AgNP-PVP had comparable reproductive toxicity with EC50s of 26.9-75.2 and 28.2-92.3mg Ag/kg dry soil, respectively; toxicity linearly increased with decreasing organic carbon content of the soils but did not show a clear effect of soil pH. Ag uptake in the enchytraeids was higher at higher organic carbon content, but could not explain differences in toxicity between soils. This study indicates that the bioavailability of both ionic and nanoparticulate Ag is mainly affected by soil organic carbon, with little effect of soil pH. Copyright © 2017. Published by Elsevier Inc.

[Roles of organic acid metabolism in plant adaptation to nutrient deficiency and aluminum toxicity stress].

PubMed

Wang, Jianfei; Shen, Qirong

2006-11-01

Organic acids not only act as the intermediates in carbon metabolism, but also exert key roles in the plant adaptation to nutrient deficiency and metal stress and in the plant-microbe interactions at root-soil interface. From the viewpoint of plant nutrition, this paper reviewed the research progress on the formation and physiology of organic acids in plant, and their functions in nitrogen metabolism, phosphorus and iron uptake, aluminum tolerance, and soil ecology. New findings in the membrane transport of organic acids and the biotechnological manipulation of organic acids in transgenic model were also discussed. This novel perspectives of organic acid metabolism and its potential manipulation might present a possibility to understand the fundamental aspects of plant physiology, and lead to the new strategies to obtain crop varieties better adapted to environmental and metal stress.

Effects of nitrogen deposition on carbon and nitrogen dynamics: a model-data comparison at an alpine meadow on the Qinghai Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, L.; Li, P.; Fang, H.; Ren, X.; He, H.; Li, Y.; Yu, G.

2015-12-01

Significant increases in atmospheric nitrogen (N) deposition due to human activities are likely to alter the carbon (C) and nitrogen cycles of terrestrial ecosystems. N deposition has the potential to affect photosynthesis, plant and soil respiration, and thus vegetation and soil C storages. Accurate estimation of the change in plant uptake of carbon dioxide due to N deposition is essential to dealing with the climate change. Among the 11 earth system models which provide climate projection for the Fifth Assessment Report of the Intergovernmental Panel for Climate Change, only the community land model (CLM-CN) used in two of them includes a dynamic terrestrial nitrogen cycle. However, the responses of carbon and nitrogen dynamics to nitrogen deposition in CLM-CN have not been well evaluated. In this study, we examine the performance of CLM-CN (version 4.0) in simulating how leaf N content, leaf area index (LAI), aboveground biomass, soil respiration, and soil organic C and N respond to low-level N addition (40 kg N m-2 yr-1) using observations at an alpine meadow on the Qinghai Tibetan Plateau. CLM-CN well reproduced the positive responses of LAI and soil respiration (+13% and +8%) to the N addition, compared to observed increases (+14% and +12%). However, the CLM-CN leaf N content response to N addition (+13%) was larger than observed (+5%), and modeled response of aboveground biomass C (+5%) was smaller than observed (+12%). Moreover, modeled slight positive response (+0.2%) of soil organic C to N addition was inconsistent with observed decrease of 8.8%. Additional manipulation experimental data are required for evaluating and improving models in simulating responses of plant N uptake, C and N allocation, litter and soil organic matter decomposition to N deposition.

Lead and Arsenic Uptake by Leafy Vegetables Grown on Contaminated Soils: Effects of Mineral and Organic Amendments

PubMed Central

McBride, Murray B.; Simon, Tobi; Tam, Geoffrey; Wharton, Sarah

2015-01-01

To assess strategies for mitigating Pb and As transfer into leafy vegetables from contaminated garden soils, we conducted greenhouse experiments using two field-contaminated soils amended with materials expected to reduce metal phytoavailability. Lettuce and mustard greens grown on these soils were analysed by ICP-MS, showing that some Pb and As transfer into the vegetables occurred from both soils tested, but plant Pb concentrations were highly variable among treatment replicates. Soil-to-plant transfer was more efficient for As than for Pb. Contamination of the leaves by soil particles probably accounted for most of the vegetable Pb, since plant Pb concentrations were correlated to plant tissue concentrations of the immobile soil elements Al and Fe. This correlation was not observed for vegetable As concentrations, evidence that most of the soil-to-plant transfer for this toxic metal occurred by root uptake and translocation into the above-ground tissues. A follow-up greenhouse experiment with lettuce on one of the two contaminated soils revealed a lower and less variable foliar Pb concentration than observed in the first experiment, with evidence of less soil particle contamination of the crop. This reduced transfer of Pb to the crop appeared to be a physical effect attributable to the greater biomass causing reduced overall exposure of the above-ground tissues to the soil surface. Attempts to reduce soil Pb and As solubility and plant uptake by amendment at practical rates with stabilizing materials including composts, peat, Ca phosphate, gypsum and Fe oxide, were generally unsuccessful. Only Fe oxide reduced soluble As in the soil, but this effect did not persist. Phosphate amendment rapidly increased soil As solubility but had no measurable effect on either soil Pb solubility or concentrations of Pb or As in the leafy vegetables. The ineffectiveness of these amendments in reducing Pb transfer into leafy vegetables is attributed in this study to the low initial Pb solubility of the studied soils and the fact that the primary mechanism of Pb transfer is physical contamination. PMID:26884640

Modeling soil organic matter reallocation in soil enhanced by fungal growth

NASA Astrophysics Data System (ADS)

Battaïa, G.; Falconer, R. E.; Otten, W.

2012-04-01

Soil, as a huge carbon reservoir having a large interface with the atmosphere, has a major role in understanding global carbon cycle. Yet, its structure gives rise to an extremely complex ecosystem in which chemical fluxes are difficult to describe. Amongst microbial organisms that inhabit soil, fungi represent an entire kingdom of life that has developed its own strategy to adapt its environment. They are thus known to have a particular importance for the reallocation of carbon (and other elements) as they are able to build a mycelium structure that can spread over several meters and through which nutrients can be translocated. This study, based on simulations, is dedicated to enlighten the role of fungal colonization to generate an ecosystem in which coexists disperse biological hotspots. The simulation environment is reconstructed from thresholded computed tomography images of soil samples. Soil organic matter acting as a resource for fungi is assumed to occur first in a particulate solid state (POM). It is degraded into dissolved organic carbon (DOC) through enzymatic activity of fungi. Fungal uptake converts DOC into an internal resource that diffuses through the mycelium and helps it for further colonization. The fungal model is an adaptation of a previously developed model. In addition to internal resource, it accounts for two states of biomass: non-insulated and insulated. One is converted into the other by insulation which is the analog of an ageing process. Being insulated, the interaction rates of the biomass with the environment (degradation and uptake) become slower and the ability to diffuse in the pore space is lost. This aims at producing a more stable state of the mycelium when all resource has been consumed. Spatially simulations reveal a transient state in POM-fungi interaction characterized by a large spread of DOC in the pore space. It is then followed by an enhanced fungal growth toward these areas. Finally a steady state occurs in which DOC is produced and consumed in a close vicinity of the POM reducing its availability for other micro-organisms.

Increasing the Size of the Microbial Biomass Altered Bacterial Community Structure which Enhances Plant Phosphorus Uptake

PubMed Central

Shen, Pu; Murphy, Daniel Vaughan; George, Suman J.; Lapis-Gaza, Hazel; Xu, Minggang

2016-01-01

Agricultural production can be limited by low phosphorus (P) availability, with soil P being constrained by sorption and precipitation reactions making it less available for plant uptake. There are strong links between carbon (C) and nitrogen (N) availability and P cycling within soil P pools, with microorganisms being an integral component of soil P cycling mediating the availability of P to plants. Here we tested a conceptual model that proposes (i) the addition of readily-available organic substrates would increase the size of the microbial biomass thus exhausting the pool of easily-available P and (ii) this would cause the microbial biomass to access P from more recalcitrant pools. In this model it is hypothesised that the size of the microbial population is regulating access to less available P rather than the diversity of organisms contained within this biomass. To test this hypothesis we added mixtures of simple organic compounds that reflect typical root exudates at different C:N ratios to a soil microcosm experiment and assessed changes in soil P pools, microbial biomass and bacterial diversity measures. We report that low C:N ratio (C:N = 12.5:1) artificial root exudates increased the size of the microbial biomass while high C:N ratio (C:N = 50:1) artificial root exudates did not result in a similar increase in microbial biomass. Interestingly, addition of the root exudates did not alter bacterial diversity (measured via univariate diversity indices) but did alter bacterial community structure. Where C, N and P supply was sufficient to support plant growth the increase observed in microbial biomass occurred with a concurrent increase in plant yield. PMID:27893833

Poliovirus adsorption by 34 minerals and soils.

PubMed

Moore, R S; Taylor, D H; Sturman, L S; Reddy, M M; Fuhs, G W

1981-12-01

The adsorption of radiolabeled infectious poliovirus type 2 by 34 well-defined soils and mineral substrates was analyzed in a synthetic freshwater medium containing 1 mM CaCl(2) and 1.25 mM NaHCO(3) at pH 7. In a model system, adsorption of poliovirus by Ottawa sand was rapid and reached equilibrium within 1 h at 4 degrees C. Near saturation, the adsorption could be described by the Langmuir equation; the apparent surface saturation was 2.5 x 10(6) plaque-forming units of poliovirus per mg of Ottawa sand. At low surface coverage, adsorption was described by the Freundlich equation. The soils and minerals used ranged from acidic to basic and from high in organic content to organic free. The available negative surface charge on each substrate was measured by the adsorption of a cationic polyelectrolyte, polydiallyldimethylammonium chloride. Most of the substrates adsorbed more than 95% of the virus. In general, soils, in comparison with minerals, were weak adsorbents. Among the soils, muck and Genesee silt loam were the poorest adsorbents; among the minerals, montmorillonite, glauconite, and bituminous shale were the least effective. The most effective adsorbents were magnetite sand and hematite, which are predominantly oxides of iron. Correlation coefficients for substrate properties and virus adsorption revealed that the elemental composition of the adsorbents had little effect on poliovirus uptake. Substrate surface area and pH, by themselves, were not significantly correlated with poliovirus uptake. A strong negative correlation was found between poliovirus adsorption and both the contents of organic matter and the available negative surface charge on the substrates as determined by their capacities for adsorbing the cationic polyelectrolyte, polydiallyldimethylammonium chloride.

Size-fractionation and characterization of landfill leachate and the improvement of Cu{sup 2+} adsorption capacity in soil and aged refuse

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lou Ziyang; State Key Laboratory of Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Tongji University, Shanghai 200092; Chai Xiaoli

2009-01-15

Leachate was collected from an anaerobic lagoon at Shanghai Laogang refuse landfill, the largest landfill in China, and the sample was separated into six fractions using micro-filtration membranes, followed by ultra-filtration membranes. Several parameters of the samples were measured, including chemical oxygen demand (COD), total organic carbon (TOC), total solids (TS), pH, total phosphate (TP), total nitrogen (TN), fixed solids (FS), NH{sub 4}{sup +}, orthophosphate, color, turbidity, and conductivity. These parameters were then quantitatively correlated with the molecular weight cutoff of the membrane used. Organic matter in the dissolved fraction (MW < 1 kDa) predominated in the leachate, accounting formore » 65% of TOC. Thermal infrared spectroscopy was used to characterize the filter residues. Asymmetric and symmetric stretching of methyl and methylene groups, and of functional groups containing nitrogen and oxygen atoms, were observed. In addition, the ability of two different samples to adsorb heavy metals was tested. Cu{sup 2+} was chosen as the representative heavy metal in this study, and the samples were soil; aged refuse, which had spent 8 years in a conventional sanitary landfill; and samples of soil and aged refuse treated for 48 h with leachate in the ratio of 5 g of sample per 50 ml of leachate. Cu{sup 2+} uptake by the raw soil was {approx}4.60 {mu}g/g, while uptake by the leachate-contacted soil and leachate-contacted aged refuse were 5.66 and 5.11 {mu}g/g, respectively. These results show that the organic matter in the leachate enhanced the capacity of aqueous solutions to adsorb Cu{sup 2+}.« less

Soil degradation effect on biological activity in Mediterranean calcareous soils

NASA Astrophysics Data System (ADS)

Roca-Pérez, L.; Alcover-Sáez, S.; Mormeneo, S.; Boluda, R.

2009-04-01

Soil degradation processes include erosion, organic matter decline, compaction, salinization, landslides, contamination, sealing and biodiversity decline. In the Mediterranean region the climatological and lithological conditions, together with relief on the landscape and anthropological activity are responsible for increasing desertification process. It is therefore considered to be extreme importance to be able to measure soil degradation quantitatively. We studied soil characteristics, microbiological and biochemical parameters in different calcareous soil sequences from Valencia Community (Easter Spain), in an attempt to assess the suitability of the parameters measured to reflect the state of soil degradation and the possibility of using the parameters to assess microbiological decline and soil quality. For this purpose, forest, scrubland and agricultural soil in three soil sequences were sampled in different areas. Several sensors of the soil biochemistry and microbiology related with total organic carbon, microbial biomass carbon, soil respiration, microorganism number and enzyme activities were determined. The results show that, except microorganism number, these parameters are good indicators of a soil biological activity and soil quality. The best enzymatic activities to use like indicators were phosphatases, esterases, amino-peptidases. Thus, the enzymes test can be used as indicators of soil degradation when this degradation is related with organic matter losses. There was a statistically significant difference in cumulative O2 uptake and extracellular enzymes among the soils with different degree of degradation. We would like to thank Spanish government-MICINN for funding and support (MICINN, project CGL2006-09776).

The roles of nematodes in nitrogen and phosphorous availability, plant uptake and growth in organically amended soils

NASA Astrophysics Data System (ADS)

Gebremikael, Mesfin; Buchan, David; De Neve, Stefaan

2017-04-01

Several studies have shown that soil biota contributes significantly to the crucial ecosystem functions and services such as organic matter decomposition and nutrient cycling. The contribution of each group of soil organisms may vary depending primarily on their feeding behavior. The magnitude of the ecosystem services by the biota may also depend on the interactions amongst the soil biota groups and their surrounding environment, for instance, biochemical characteristics of the externally added organic material. However, only a few studies considered these interactions concurrently. Here, we investigated the effects of fauna-microbe-plant interactions on organic matter decomposition and nutrient cycling by applying different organic materials spanning a range of C:N ratios and presumed N availability. Nematodes were selected as model fauna because they are the most abundant soil metazoans that have a diversified feeding strategy and interact very intimately with microbes, other fauna, and plants. A series of incubation experiments were conducted in bare and planted microcosms under controlled conditions using fresh soil collected from an agricultural field and defaunated by gamma irradiation. In the first experiment without plants, the defaunated soil cores were either left unamended (UNA) or received lignin-rich low N compost (COI), N-rich compost (COV), fresh manure (MAN) or chopped clover (CLO). The entire free-living soil nematode community was extracted from unirradiated fresh soil and reinoculated into half of the soil cores that had been defaunated by gamma irradiation. Two treatments: with (+Nem) and without (-Nem) nematodes were compared for soil nitrogen and phosphorus availability, plant uptake, and PLFA signatures over time during a 105-days incubation. The same experimental setup was used to investigate further the CLO amendment in the presence of plants (rye grass was used as a model plant). Nematodes were extracted and assigned to feeding groups, and their contribution was calculated by simple differences between +Nem and Nem treatments. Nematode reinoculation generally increased the amount of N mineralized from the amendment in bare microcosms, the maximal mineralization being greater and occurring earlier for amendments with high bioavailable N (CLO and COV). Nematode reinoculation also clearly stimulated nitrification in all amendments. The abundance of both bacteria and fungi increased the most with MAN and CLO amendments which have the lowest C:N. In planted microcosms, nematodes increased net N mineralization and P availability by +25 and +23% respectively in CLO amended microcosms. Dry plant biomass and total PLFA concentration were also significantly higher during most of the incubation periods in +Nem compared to -Nem in CLO amended microcosms. Our results show that different functional groups of nematodes collectively exert significant influence on OM decomposition, nutrient availability and plant growth.

Effect of selenium-enriched organic material amendment on selenium fraction transformation and bioavailability in soil.

PubMed

Wang, Dan; Dinh, Quang Toan; Anh Thu, Tran Thi; Zhou, Fei; Yang, Wenxiao; Wang, Mengke; Song, Weiwei; Liang, Dongli

2018-05-01

To exploit the plant byproducts from selenium (Se) biofortification and reduce environmental risk of inorganic Se fertilizer, pot experiment was conducted in this study. The effects of Se-enriched wheat (Triticum aestivum L.) straw (WS + Se) and pak choi (Brassica chinensis L.) (P + Se) amendment on organo-selenium speciation transformation in soil and its bioavailability was evaluated by pak choi uptake. The Se contents of the cultivated pak choi in treatments amended with the same amount of Se-enriched wheat straw and pak choi were 1.7 and 9.7 times in the shoots and 2.3 and 6.3 times in the roots compared with control treatment. Soil respiration rate was significantly increased after all organic material amendment in soil (p < 0.05), which accelerated the mineralization of organic materials and thus resulted in soluble Se (SOL-Se), exchangeable Se (EX-Se), and fulvic acid-bound Se (FA-Se) fraction increasing by 25.2-29.2%, 9-13.8%, and 4.92-8.28%, respectively. In addition, both Pearson correlation and cluster analysis showed that EX-Se and FA-Se were better indicators for soil Se availability in organic material amendment soils. The Marquardt-Levenberg Model well described the dynamic kinetics of FA-Se content after Se-enriched organic material amendment in soil mainly because of the mineralization of organic carbon and organo-selenium. The utilization of Se in P + Se treatment was significantly higher than those in WS + Se treatment because of the different mineralization rates and the amount of FA-Se in soil. Se-enriched organic materials amendment can not only increase the availability of selenium in soil but also avoid the waste of valuable Se source. Copyright © 2018 Elsevier Ltd. All rights reserved.

Biotic and abiotic controls on diurnal fluctuations in labile soil phosphorus of a wet tropical forest.

PubMed

Vandecar, Karen L; Lawrence, Deborah; Wood, Tana; Oberbauer, Steven F; Das, Rishiraj; Tully, Katherine; Schwendenmann, Luitgard

2009-09-01

The productivity of many tropical wet forests is generally limited by bioavailable phosphorus (P). Microbial activity is a key regulator of P availability in that it determines both the supply of P through organic matter decomposition and the depletion of bioavailable P through microbial uptake. Both microbial uptake and mineralization occur rapidly, and their net effect on P availability varies with soil moisture, temperature, and soil organic matter quantity and quality. Exploring the mechanisms driving P availability at fine temporal scales can provide insight into the coupling of carbon, water, and nutrient cycles, and ultimately, the response of tropical forests to climate change. Despite the recognized importance of P cycling to the dynamics of wet tropical forests and their potential sensitivity to short-term fluctuations in bioavailable P, the diurnal pattern of P remains poorly understood. This study quantifies diurnal fluctuations in labile soil P and evaluates the importance of biotic and abiotic factors in driving these patterns. To this end, measurements of labile P were made every other hour in a Costa Rican wet tropical forest oxisol. Spatial and temporal variation in Bray-extractable P were investigated in relation to ecosystem carbon flux, soil CO2 efflux, soil moisture, soil temperature, solar radiation, and sap-flow velocity. Spatially averaged bi-hourly (every two hours) labile P ranged from 0.88 to 2.48 microg/g across days. The amplitude in labile P throughout the day was 0.61-0.82 microg/g (41-54% of mean P concentrations) and was characterized by a bimodal pattern with a decrease at midday. Labile P increased with soil CO2 efflux and soil temperature and declined with increasing sap flow and solar radiation. Together, soil CO2 efflux, soil temperature, and sap flow explained 86% of variation in labile P.

Soil Organic Carbon Loss: An Overlooked Factor in the Carbon Sequestration Potential of Enhanced Mineral Weathering

NASA Astrophysics Data System (ADS)

Dietzen, Christiana; Harrison, Robert

2016-04-01

Weathering of silicate minerals regulates the global carbon cycle on geologic timescales. Several authors have proposed that applying finely ground silicate minerals to soils, where organic acids would enhance the rate of weathering, could increase carbon uptake and mitigate anthropogenic CO2 emissions. Silicate minerals such as olivine could replace lime, which is commonly used to remediate soil acidification, thereby sequestering CO2 while achieving the same increase in soil pH. However, the effect of adding this material on soil organic matter, the largest terrestrial pool of carbon, has yet to be considered. Microbial biomass and respiration have been observed to increase with decreasing acidity, but it is unclear how long the effect lasts. If the addition of silicate minerals promotes the loss of soil organic carbon through decomposition, it could significantly reduce the efficiency of this process or even create a net carbon source. However, it is possible that this initial flush of microbial activity may be compensated for by additional organic matter inputs to soil pools due to increases in plant productivity under less acidic conditions. This study aimed to examine the effects of olivine amendments on soil CO2 flux. A liming treatment representative of typical agricultural practices was also included for comparison. Samples from two highly acidic soils were split into groups amended with olivine or lime and a control group. These samples were incubated at 22°C and constant soil moisture in jars with airtight septa lids. Gas samples were extracted periodically over the course of 2 months and change in headspace CO2 concentration was determined. The effects of enhanced mineral weathering on soil organic matter have yet to be addressed by those promoting this method of carbon sequestration. This project provides the first data on the potential effects of enhanced mineral weathering in the soil environment on soil organic carbon pools.

Heavy Metal Concentrations in Soils and Factors Affecting Metal Uptake by Plants in the Vicinity of a Korean Cu-W Mine.

PubMed

Jung, Myung Chae

2008-04-04

Heavy metal concentrations were measured in soils and plants in and around a copper-tungsten mine in southeast Korea to investigate the influence of past base metal mining on the surface environment. The results of chemical analysis indicate that the heavy metals in soils decreased with distance from the source, controlled mainly by water movement and topography. The metal concentrations measured in plant species generally decreased in the order; spring onions > soybean leaves > perilla leaves » red pepper > corn grains » jujube grains, although this pattern varied moderately between different elements. The results agree with other reports that metal concentrations in leaves are usually much higher than those in grain. Factors influencing the bioavailability of metals and their occurrences in crops were found as soil pH, cation exchange capacity, organic matter content, soil texture, and interaction among the target elements. It is concluded that total metal concentrations in soils are the main controls on their contents in plants. Soil pH was also an important factor. A stepwise linear multiple regression analysis was also conducted to identify the dominant factors influencing metal uptake by plants. Metal concentrations in plants were also estimated by computer-aided statistical methods.

Impact of ionophore monensin on performance and Cu uptake in earthworm Eisenia andrei exposed to copper-contaminated soil.

PubMed

Zidar, Primož; Kos, Monika; Vogel-Mikuš, Katarina; van Elteren, Johannes Teun; Debeljak, Marta; Žižek, Suzana

2016-10-01

Exposure of beneficial soil organisms to chemical mixtures is of great concern and can result in unexpected deleterious consequences. We investigated the effects of concurrent soil contamination with monensin, a veterinary pharmaceutical and feed additive, and copper, on earthworm copper uptake and reproductive success. The animals were exposed for 14 or 28 days to both substances and the results showed that the Cu body burden of earthworms increases in the presence of monensin. The harmful effects of Cu on earthworm cocoon production were considerably higher when monensin was also present in the soil. To localise the copper in earthworm tissues, histological staining was performed using two different dyes (rubeanic acid and 5-4-(p-dimethylaminobenzylidene)-rhodanine). Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) was used to quantify the Cu levels in the tissues. Cu was found predominantly in the gut wall. The Cu content in the body wall was at least ten times lower compared to the gut, but was proportional to the level of soil contamination. Concurrent soil contamination with monensin and copper resulted in higher earthworm Cu levels and in decreased reproductive success of these important soil decomposers. Copyright © 2016 Elsevier Ltd. All rights reserved.

Effect of crop rotation on soil nutrient balance and weediness in soddy podzolic organic farming fields

NASA Astrophysics Data System (ADS)

Zarina, Livija; Zarina, Liga

2017-04-01

The nutrient balance in different crop rotations under organic cropping system has been investigated in Latvia at the Institute of Agricultural Resources and Economics since 2006. Latvia is located in a humid and moderate climatic region where the rainfall exceeds evaporation (soil moisture coefficient > 1) and the soil moisture regime is characteristic with percolation. The average annual precipitation is 670-850 mm. The average temperature varies from -6.7° C in January to 16.5 °C in July. The growing season is 175 - 185 days. The most widespread are podzolic soils and mainly they are present in agricultural fields in all regions of Latvia. In a wider sense the goal of the soil management in organic farming is a creation of the biologically active flora and fauna in the soil by maintaining a high level of soil organic matter which is good for crops nutrient balance. Crop rotation is a central component of organic farming systems and has many benefits, including growth of soil microbial activity, which may increase nutrient availability. The aim of the present study was to calculate nutrient balance for each crop in the rotations and average in each rotation. Taking into account that crop rotations can limit build-up of weeds, additionally within the ERA-net CORE Organic Plus transnational programs supported project PRODIVA the information required for a better utilization of crop diversification for weed management in North European organic arable cropping systems was summarized. It was found that the nutrient balance was influenced by nutrients uptake by biomass of growing crops in crop rotation. The number of weeds in the organic farming fields with crop rotation is dependent on the cultivated crops and the succession of crops in the crop rotation.

Auxin effects on Pb phytoextraction from polluted soils by Tegetes minuta L. and Bidens pilosa L.: Extractive power of their root exudates.

PubMed

Salazar, María Julieta; Rodriguez, Judith Hebelen; Cid, Carolina Vergara; Pignata, María Luisa

2016-07-05

The principal impediment for Pb uptake by plants is the Casparian strip in roots. It prevents metals reaching the xylem, thereby hampering translocation to the aerial organs. In the root apices, young root cells have thin cell walls and the Casparian strip is not completely developed, which could facilitate Pb uptake by roots at these vulnerable points. However, as the phytotoxic effects of Pb reduce root growth and enhance suberization, entry of Pb into the plant is avoided. We propose that the application of root growth promotors could be an important complement in the phytoextraction of Pb from polluted soils, due to their effects on produced biomass, Pb toxicity, and root exudate production. A greenhouse experiment was carried on to evaluate the auxin application effect on the Pb uptake of Bidens pilosa and Tagetes minuta. These species were sensitive to auxins, but the phytotoxic effect of Pb was not reversed by this treatment. Root exudates capable of extracting Pb were produced only when the species were grown in highly polluted soils, indicating a behavioral response to Pb exposure which is desirable for phytoremediation. Copyright © 2016 Elsevier B.V. All rights reserved.

Nitrogen losses, uptake and abundance of ammonia oxidizers in soil under mineral and organo-mineral fertilization regimes.

PubMed

Florio, Alessandro; Felici, Barbara; Migliore, Melania; Dell'Abate, Maria Teresa; Benedetti, Anna

2016-05-01

A laboratory incubation experiment and greenhouse studies investigated the impact of organo-mineral (OM) fertilization as an alternative practice to conventional mineral (M) fertilization on nitrogen (N) uptake and losses in perennial ryegrass (Lolium perenne) as well as on soil microbial biomass and ammonia oxidizers. While no significant difference in plant productivity and ammonia emissions between treatments could be detected, an increase in soil total N content and an average 17.9% decrease in nitrates leached were observed in OM fertilization compared with M fertilization. The microbial community responded differentially to treatments, suggesting that the organic matter fraction of the OM fertilizer might have influenced N immobilization in the microbial biomass in the short-medium term. Furthermore, nitrate contents in fertilized soils were significantly related to bacterial but not archaeal amoA gene copies, whereas in non-fertilized soils a significant relationship between soil nitrates and archaeal but not bacterial amoA copies was found. The application of OM fertilizer to soil maintained sufficient productivity and in turn increased N use efficiency and noticeably reduced N losses. Furthermore, in this experiment, ammonia-oxidizing bacteria drove nitrification when an N source was added to the soil, whereas ammonia-oxidizing archaea were responsible for ammonia oxidation in non-fertilized soil. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

Long-term fate of nitrate fertilizer in agricultural soils.

PubMed

Sebilo, Mathieu; Mayer, Bernhard; Nicolardot, Bernard; Pinay, Gilles; Mariotti, André

2013-11-05

Increasing diffuse nitrate loading of surface waters and groundwater has emerged as a major problem in many agricultural areas of the world, resulting in contamination of drinking water resources in aquifers as well as eutrophication of freshwaters and coastal marine ecosystems. Although empirical correlations between application rates of N fertilizers to agricultural soils and nitrate contamination of adjacent hydrological systems have been demonstrated, the transit times of fertilizer N in the pedosphere-hydrosphere system are poorly understood. We investigated the fate of isotopically labeled nitrogen fertilizers in a three-decade-long in situ tracer experiment that quantified not only fertilizer N uptake by plants and retention in soils, but also determined to which extent and over which time periods fertilizer N stored in soil organic matter is rereleased for either uptake in crops or export into the hydrosphere. We found that 61-65% of the applied fertilizers N were taken up by plants, whereas 12-15% of the labeled fertilizer N were still residing in the soil organic matter more than a quarter century after tracer application. Between 8-12% of the applied fertilizer had leaked toward the hydrosphere during the 30-y observation period. We predict that additional exports of (15)N-labeled nitrate from the tracer application in 1982 toward the hydrosphere will continue for at least another five decades. Therefore, attempts to reduce agricultural nitrate contamination of aquatic systems must consider the long-term legacy of past applications of synthetic fertilizers in agricultural systems and the nitrogen retention capacity of agricultural soils.

Long-term fate of nitrate fertilizer in agricultural soils

PubMed Central

Sebilo, Mathieu; Mayer, Bernhard; Nicolardot, Bernard; Pinay, Gilles; Mariotti, André

2013-01-01

Increasing diffuse nitrate loading of surface waters and groundwater has emerged as a major problem in many agricultural areas of the world, resulting in contamination of drinking water resources in aquifers as well as eutrophication of freshwaters and coastal marine ecosystems. Although empirical correlations between application rates of N fertilizers to agricultural soils and nitrate contamination of adjacent hydrological systems have been demonstrated, the transit times of fertilizer N in the pedosphere–hydrosphere system are poorly understood. We investigated the fate of isotopically labeled nitrogen fertilizers in a three–decade-long in situ tracer experiment that quantified not only fertilizer N uptake by plants and retention in soils, but also determined to which extent and over which time periods fertilizer N stored in soil organic matter is rereleased for either uptake in crops or export into the hydrosphere. We found that 61–65% of the applied fertilizers N were taken up by plants, whereas 12–15% of the labeled fertilizer N were still residing in the soil organic matter more than a quarter century after tracer application. Between 8–12% of the applied fertilizer had leaked toward the hydrosphere during the 30-y observation period. We predict that additional exports of 15N-labeled nitrate from the tracer application in 1982 toward the hydrosphere will continue for at least another five decades. Therefore, attempts to reduce agricultural nitrate contamination of aquatic systems must consider the long-term legacy of past applications of synthetic fertilizers in agricultural systems and the nitrogen retention capacity of agricultural soils. PMID:24145428

Isolation of As-tolerant bacteria and their potentials of reducing As and Cd accumulation of edible tissues of vegetables in metal(loid)-contaminated soils.

PubMed

Wang, Xiaohan; Nie, Zongwei; He, Linyan; Wang, Qi; Sheng, Xiafang

2017-02-01

In this study, three As-tolerant bacteria Ralstonia eutropha Q2-8, Rhizobium tropici Q2-13, and Exiguobacterium aurantiacum Q3-11 were isolated from the rhizosphere and bulk soils of Chinese cabbage. The strains were characterized for their production of indole-3-acetic acid (IAA) and siderophores, their effects on soil metal(loid) bioavailability and organic matter content, and their effects on the edible tissue growth and metal(loid) accumulation of Chinese cabbage and radish in the metal(loid)-contaminated soil. The strains produced IAA and siderophores and increased the edible tissue biomass (ranging from 74% to 124%) of the vegetables compared to the controls. Furthermore, strain Q2-8 reduced As contents (ranging from 22% to 50%), while strains Q2-13 and Q3-11 decreased Cd contents (ranging from 21% to 53%) of the edible tissues of the vegetables compared to the controls. Strains Q2-8, Q2-13, and Q3-11 decreased the DTPA-extractable Cd contents (ranging from 16% to 41%) and increased the organic matter contents of the rhizosphere soils compared to the controls. The results showed the effects of the strains on the increased edible tissue growth and reduced As and Cd uptake of the edible tissues and highlighted the possibility to develop a new bacterial-assisted technique for reduced metal(loid) uptake of vegetables in the metal(loid)-contaminated soils. Copyright © 2016 Elsevier B.V. All rights reserved.

Defoliating Insect Mass Outbreak Affects Soil N Fluxes and Tree N Nutrition in Scots Pine Forests.

PubMed

Grüning, Maren M; Simon, Judy; Rennenberg, Heinz; L-M-Arnold, Anne

2017-01-01

Biotic stress by mass outbreaks of defoliating pest insects does not only affect tree performance by reducing its photosynthetic capacity, but also changes N cycling in the soil of forest ecosystems. However, how insect induced defoliation affects soil N fluxes and, in turn, tree N nutrition is not well-studied. In the present study, we quantified N input and output fluxes via dry matter input, throughfall, and soil leachates. Furthermore, we investigated the effects of mass insect herbivory on tree N acquisition (i.e., organic and inorganic 15 N net uptake capacity of fine roots) as well as N pools in fine roots and needles in a Scots pine ( Pinus sylvestris L.) forest over an entire vegetation period. Plots were either infested by the nun moth ( Lymantria monacha L.) or served as controls. Our results show an increased N input by insect feces, litter, and throughfall at the infested plots compared to controls, as well as increased leaching of nitrate. However, the additional N input into the soil did not increase, but reduce inorganic and organic net N uptake capacity of Scots pine roots. N pools in the fine roots and needles of infested trees showed an accumulation of total N, amino acid-N, protein-N, and structural N in the roots and the remaining needles as a compensatory response triggered by defoliation. Thus, although soil N availability was increased via surplus N input, trees did not respond with an increased N acquisition, but rather invested resources into defense by accumulation of amino acid-N and protein-N as a survival strategy.

Plant Water Uptake in Drying Soils1

PubMed Central

Lobet, Guillaume; Couvreur, Valentin; Meunier, Félicien; Javaux, Mathieu; Draye, Xavier

2014-01-01

Over the last decade, investigations on root water uptake have evolved toward a deeper integration of the soil and roots compartment properties, with the goal of improving our understanding of water acquisition from drying soils. This evolution parallels the increasing attention of agronomists to suboptimal crop production environments. Recent results have led to the description of root system architectures that might contribute to deep-water extraction or to water-saving strategies. In addition, the manipulation of root hydraulic properties would provide further opportunities to improve water uptake. However, modeling studies highlight the role of soil hydraulics in the control of water uptake in drying soil and call for integrative soil-plant system approaches. PMID:24515834

A hierarchical examination of methane uptake: field patterns, lab physiology, community composition and biogeography

NASA Astrophysics Data System (ADS)

von Fischer, J. C.; Koyama, A.; Johnson, N. G.; Webb, C. T.

2015-12-01

Scaling problems abound in biogeochemistry. At the finest scale, soil microbes experience habitats and environmental changes that affect the chemical transformations of interest. We collect the DNA of these organisms from sites across landscapes and note differences in who is there, and we seek to evaluate why group membership changes in space (biogeography) and why activity rates change over time (physiology). The goal of efforts at finer scales is often to better predict patterns at larger scales. We conducted such a hierarchical examination of methane uptake in the Great Plains grasslands of North America, gathering data from 22 plots at 8 field locations, scattered from South Dakota to New Mexico and Colorado to Kansas. Our work provides insight into methanotroph biogeochemistry at all of these scales. For example, we found that methane uptake rates vary mostly due to the methanotroph activity, and less so due to diffusivity. A combination of field and lab observations reveal that methanotroph communities differ in their sensitivity to soil moisture and to ammonium (an inhibitor of methanotrophy). Examination of methanotroph community composition reveals tantalizing patterns in composition, dominance and richness across sites, that appears to be structured by patterns of precipitation and soil texture. We anticipate that greater synthesis of these hierarchical findings will paint a richer picture of methanotroph life and enable improved prediction of methane uptake at regional scales.

Toxic Compounds in Our Food: Arsenic Uptake By Rice and Potential Mitigation By Silicon

NASA Astrophysics Data System (ADS)

Seyfferth, A.; Gill, R.; Penido, E.

2014-12-01

Arsenic is a ubiquitous element in soils worldwide and has the potential to negatively impact human and ecosystem health under certain biogeochemical conditions. While arsenic is relatively immobile in most oxidized soils due to a high affinity for soil solids, arsenic becomes mobilized under reduced soil conditions due to the reductive dissolution of iron(III) oxides thereby releasing soil-bound arsenic. Since arsenic is a well-known carcinogen, this plant-soil process has the potential to negatively impact the lives of billions of rice consumers worldwide upon plant uptake and grain storage of released arsenic. Moreover, arsenic uptake by rice is excacerbated by the use of As-laden groundwater for rice irrigation. One proposed strategy to decrease arsenic uptake by rice plants is via an increase in dissolved silicon in paddy soil solution (pore-water), since silicic acid and arsenous acid share an uptake pathway. However, several soil processes that influence arsenic cycling may be affected by silicon including desorption from bulk soil, formation and mineralogy of iron(III) oxide plaque, and adsorption/desorption onto/from iron plaque; the effect of silicon on these soil processes will ultimately dictate the effectiveness of altered dissolved silicon in decreasing arsenic uptake at the root, which in turn dictates the concentration of arsenic found in grains. Furthermore, the source of silicon may impact carbon cycling and, in particular, methane emissions. Here, impacts of altered dissolved silicon on processes that affect rhizospheric biogeochemical cycling of arsenic and subsequent plant-uptake, and how it influences other biogeochemical cycles such as carbon and iron are investigated. We show that silicon can decrease arsenic uptake and grain storage under certain conditions, and that altered silicon affects the type of iron (III) oxide that comprises iron plaque.

Response of soil methane uptake to simulated nitrogen deposition and grazing management across three types of steppe in Inner Mongolia, China.

PubMed

Li, Xianglan; He, Hong; Yuan, Wenping; Li, Linghao; Xu, Wenfang; Liu, Wei; Shi, Huiqiu; Hou, Longyu; Chen, Jiquan; Wang, Zhiping

2018-01-15

The response of soil methane (CH 4 ) uptake to increased nitrogen (N) deposition and grazing management was studied in three types of steppe (i.e., meadow steppe, typical steppe, and desert steppe) in Inner Mongolia, China. The experiment was designed with four simulated N deposition rates such as 0, 50, 100, and 200kgNha -1 , respectively, under grazed and fenced management treatments. Results showed that the investigated steppes were significant sinks for CH 4 , with an uptake flux of 1.12-3.36kgha -1 over the grass growing season and that the magnitude of CH 4 uptake significantly (P<0.05) decreased with increasing N deposition rates. The soil CH 4 uptake rates were highest in the desert steppe, moderate in the typical steppe, and lowest in the meadow steppe. Compared with grazed plots, fencing increased the CH 4 uptake by 4.7-40.2% with a mean value of 20.2% across the three different steppe types. The responses of soil CH 4 uptake to N deposition in the continental steppe varied depending on the N deposition rate, steppe type, and grazing management. A significantly positive correlation between CH 4 uptake and soil temperature was found in this study, whereas no significant relationship between soil moisture and CH 4 uptake occurred. Our results may contribute to the improvement of model parameterization for simulating biosphere-atmosphere CH 4 exchange processes and for evaluating the climate change feedback on CH 4 soil uptake. Copyright © 2017 Elsevier B.V. All rights reserved.

[Changes of soil nutrient contents after prescribed burning of forestland in Heshan City, Guangdong Province].

PubMed

Sun, Yu-xin; Wu, Jian-ping; Zhou, Li-xia; Lin, Yong-biao; Fu, Sheng-lei

2009-03-01

A comparative study was conducted to analyze the changes of soil nutrient contents in Eucalyptus forestland and in shrubland after three years of prescribed burning. In Eucalyptus forestland, soil organic carbon, total nitrogen, available potassium contents and soil pH decreased significantly; soil available phosphorus and exchangeable magnesium contents, net nitrogen mineralization rate and ammonification rate also decreased but showed no significant difference. In shrubland, soil exchangeable calcium content increased significantly, but the contents of other nutrients had no significant change. The main reason of the lower soil net nitrogen mineralization rate in Eucalyptus forest could be the decrease of available substrates and the uptake of larger amount of soil nutrients by the fast growth of Eucalyptus. The soil nutrients in shrubland had a quick restoration rate after burning.

Effects of soil organic matter content on cadmium toxicity in Eisenia fetida: implications for the use of biomarkers and standard toxicity tests.

PubMed

Irizar, A; Rodríguez, M P; Izquierdo, A; Cancio, I; Marigómez, I; Soto, M

2015-01-01

Bioavailability is affected by soil physicochemical characteristics such as pH and organic matter (OM) content. In addition, OM constitutes the energy source of Eisenia fetida, a well established model species for soil toxicity assessment. The present work aimed at assessing the effects of changes in OM content on the toxicity of Cd in E. fetida through the measurement of neutral red uptake (NRU) and mortality, growth, and reproduction (Organisation for Economic Co-operation and Development [OECD] Nos. 207 and 222). Complementarily, metallothionein (MT) and catalase transcription levels were measured. To decrease variability inherent to natural soils, artificial soils (Organization for Economic Cooperation and Development 1984) with different OM content (6, 10, and 14%) and spiked with Cd solutions at increasing concentrations were used. Low OM in soil decreased soil ingestion and Cd bioaccumulation but also increased Cd toxicity causing lower NRU of coelomocytes, 100 % mortality, and stronger reproduction impairment, probably due to the lack of energy to maintain protection mechanisms (production of MT).Cd bioaccumulation did not reflect toxicity, and OM played a pivotal role in Cd toxicity. Thus, OM content should be taken into account when using E. fetida in in vivo exposures for soil health assessment.

Concentration/time-dependent dissipation, partitioning and plant accumulation of hazardous current-used pesticides and 2-hydroxyatrazine in sand and soil.

PubMed

Neuwirthová, Natália; Bílková, Zuzana; Vašíčková, Jana; Hofman, Jakub; Bielská, Lucie

2018-07-01

The dissipation, partitioning dynamics and biouptake was measured for selected hazardous current-used pesticides (conazole fungicides: epoxiconazole, flusilazole, tebuconazole; prochloraz, chlorpyrifos, pendimethalin) and for a transformation product (2-hydroxyatrazine) in agricultural soil and quartz sand as representatives of a real and a worst-case scenario. Dissipation, uptake to Lactuca sativa and the freely dissolved concentration along with the organic carbon-normalized sorption coefficients (K oc ) were determined on days 12, 40, and 90 following the application of compounds at three fortification levels (0.1-1.0-10 mg/kg). Conazole fungicides showed similar dissipation patterns and were more persistent in soil than prochloraz, chlorpyrifos and pendimethalin. 2-Hydroxyatrazine showed a concentration-depended decrease in persistency in soil. Lettuce roots were shown to accumulate higher amounts than shoots where the extent of root uptake was driven by compound partitioning. This was evidenced by the ability of freely dissolved concentration (C free ) to reliably (r 2  = 0.94) predict root uptake. Concentration in leaves did not exceed the maximum residue levels (MRLs) for lettuce, which was likely given by the low root-to-shoot translocation factors (TFs) of the tested compounds varying between 0.007 and 0.14. K oc values were in the range of literature values. Sorption to soil was higher than to sand for all compounds, yet following the K oc dynamics compounds did not appear to be sequestered in soil with increasing residence time. From these results, it follows that the tested compounds may persist in soil but since they did not accumulate in lettuce above MRLs, contamination of the food web is unlikely. Copyright © 2018 Elsevier Ltd. All rights reserved.

Soil fertility controls soil-atmosphere carbon dioxide and methane fluxes in a tropical landscape converted from lowland forest to rubber and oil palm plantations

NASA Astrophysics Data System (ADS)

Hassler, E.; Corre, M. D.; Tjoa, A.; Damris, M.; Utami, S. R.; Veldkamp, E.

2015-10-01

Expansion of palm oil and rubber production, for which global demand is increasing, causes rapid deforestation in Sumatra, Indonesia, and is expected to continue in the next decades. Our study aimed to (1) quantify changes in soil CO2 and CH4 fluxes with land-use change and (2) determine their controlling factors. In Jambi Province, Sumatra, we selected two landscapes on heavily weathered soils that differ mainly in texture: loam and clay Acrisol soils. In each landscape, we investigated the reference land-use types (forest and secondary forest with regenerating rubber) and the converted land-use types (rubber, 7-17 years old, and oil palm plantations, 9-16 years old). We measured soil CO2 and CH4 fluxes monthly from December 2012 to December 2013. Annual soil CO2 fluxes from the reference land-use types were correlated with soil fertility: low extractable phosphorus (P) coincided with high annual CO2 fluxes from the loam Acrisol soil that had lower fertility than the clay Acrisol soil (P < 0.05). Soil CO2 fluxes from the oil palm (107.2 to 115.7 mg C m-2 h-1) decreased compared to the other land-use types (between 178.7 and 195.9 mg C m-2 h-1; P < 0.01). Across land-use types, annual CO2 fluxes were positively correlated with soil organic carbon (C) and negatively correlated with 15N signatures, extractable P and base saturation. This suggests that the reduced soil CO2 fluxes from oil palm were the result of strongly decomposed soil organic matter and reduced soil C stocks due to reduced litter input as well as being due to a possible reduction in C allocation to roots due to improved soil fertility from liming and P fertilization in these plantations. Soil CH4 uptake in the reference land-use types was negatively correlated with net nitrogen (N) mineralization and soil mineral N, suggesting N limitation of CH4 uptake, and positively correlated with exchangeable aluminum (Al), indicating a decrease in methanotrophic activity at high Al saturation. Reduction in soil CH4 uptake in the converted land-use types (ranging from -3.0 to -14.9 μg C m-2 h-1) compared to the reference land-use types (ranging from -20.8 to -40.3 μg C m-2 h-1; P < 0.01) was due to a decrease in soil N availability in the converted land-use types. Our study shows for the first time that differences in soil fertility control the soil-atmosphere exchange of CO2 and CH4 in a tropical landscape, a mechanism that we were able to detect by conducting this study on the landscape scale.

Mycorrhizal strategies for nitrogen acquisition have divergent effects on soil carbon

NASA Astrophysics Data System (ADS)

Wurzburger, N.; Brookshire, J.

2016-12-01

Most land plants acquire nitrogen (N) through associations with mycorrhizal fungi, but these symbioses employ contrasting strategies for N acquisition, which may lead to different stocks of soil carbon (C). Here we experimentally test the hypothesis that contrasting strategies for N acquisition by arbuscular (AM) and ectomycorrhizal (ECM) plants drive divergent patterns in soil decomposer activity and C loss. By employing a simple mesocosm system where we grew AM and ECM trees in 13C- and 15N-enriched organic matter, we quantified loss rates of soil C, uptake of N and net contributions of new plant C to soil. We found that AM trees promoted greater soil C loss relative to ECM trees and key mechanisms of N acquisition explained this pattern. AM trees were less dependent on biomass C to acquire N than ECM trees, and N uptake was correlated with soil C loss for AM, but not ECM trees. Further, while new plant C inputs stimulated soil C loss in both symbioses, we detected plant C inputs more frequently and measured higher rates of decomposer activity in soils colonized by AM relative to ECM trees. Together, our findings suggest that contrasting strategies of N acquisition by AM and ECM, including differences in stimulating decomposition, explain mycorrhizal effects on soil C. Our study provides experimental demonstration of the key mechanisms by which mycorrhizal strategies may give rise to broad patterns in soil C across terrestrial ecosystems.

Nitrogen dynamics in Turbic Cryosols from Siberia and Greenland☆

PubMed Central

Wild, Birgit; Schnecker, Jörg; Bárta, Jiří; Čapek, Petr; Guggenberger, Georg; Hofhansl, Florian; Kaiser, Christina; Lashchinsky, Nikolaj; Mikutta, Robert; Mooshammer, Maria; Šantrůčková, Hana; Shibistova, Olga; Urich, Tim; Zimov, Sergey A.; Richter, Andreas

2013-01-01

Turbic Cryosols (permafrost soils characterized by cryoturbation, i.e., by mixing of soil layers due to freezing and thawing) are widespread across the Arctic, and contain large amounts of poorly decomposed organic material buried in the subsoil. This cryoturbated organic matter exhibits retarded decomposition compared to organic material in the topsoil. Since soil organic matter (SOM) decomposition is known to be tightly linked to N availability, we investigated N transformation rates in different soil horizons of three tundra sites in north-eastern Siberia and Greenland. We measured gross rates of protein depolymerization, N mineralization (ammonification) and nitrification, as well as microbial uptake of amino acids and NH4+ using an array of 15N pool dilution approaches. We found that all sites and horizons were characterized by low N availability, as indicated by low N mineralization compared to protein depolymerization rates (with gross N mineralization accounting on average for 14% of gross protein depolymerization). The proportion of organic N mineralized was significantly higher at the Greenland than at the Siberian sites, suggesting differences in N limitation. The proportion of organic N mineralized, however, did not differ significantly between soil horizons, pointing to a similar N demand of the microbial community of each horizon. In contrast, absolute N transformation rates were significantly lower in cryoturbated than in organic horizons, with cryoturbated horizons reaching not more than 32% of the transformation rates in organic horizons. Our results thus indicate a deceleration of the entire N cycle in cryoturbated soil horizons, especially strongly reduced rates of protein depolymerization (16% of organic horizons) which is considered the rate-limiting step in soil N cycling. PMID:24302785

Accumulation of germanium and rare earth elements in functional groups of selected energy crops cultivated on two different soils

NASA Astrophysics Data System (ADS)

Wiche, Oliver; Székely, Balázs

2016-04-01

A field experiment was conducted to investigate the uptake of Ge and selected REEs in functional groups of selected crop species. Five species belonging to the functional group of grasses (Hordeum vulgare, Zea mays, Avena sativa, Panicum miliaceum and Phalaris arundinacea) and four species from the group of herbs (Lupinus albus, Lupinus angustifolius, Fagopyrum esculentum and Brassica napus) were cultivated in parallel on two soils with slightly alkaline (soil A: pH = 7.8) and slightly acidic (soil B: pH = 6.8) conditions. After harvest, concentrations of Ge, La, Nd, Gd, Er, P, Fe, Mn and Si in shoot tissues were determined with ICP-MS. Concentrations of Ge were significantly higher in grasses than in herbs. Conversely, concentrations of La and Nd were significantly higher in herbs, than in grasses. Highest concentrations were measured in Brassica napus (REEs) and Zea mays (Ge). Concentrations of Ge significantly correlated with that of Si in the shoots showing low concentrations in herbs and high concentrations in grasses, indicating a common mechanism during the uptake in grasses. Concentrations of REEs correlated significantly with that of Fe, indicating increasing concentrations of REEs with increasing concentrations of Fe. Cultivation of species on the slightly acidic soil significantly increased the uptake Ge in Lupinus albus and Phalaris arundinacea and the uptake of La and Nd in all species except of Phalaris arundinacea. This study demonstrated that commonly used field crops could be regarded as suitable candidates for a phytomining of Ge and REEs, since these species develop high yields of shoots, high concentrations of elements and are widely used in agricultural practice. Under soil conditions where bioavailability of Ge and REEs is expected to be low (soil A) accumulation can be estimated at 1.8 g/ha Ge in Z. mays and 3.7 g/ha REEs (1.5 g/ha La, 1.4 g/ha Nd, 0.6 g/ha Gd, 0.3 g/ha Er), respectively, in B. napus, assuming a constant high efficiency of phytoextraction in closed stands. Slight changes in soil properties like soil pH and fractions of REEs bound to organic matter significantly enhanced the uptake of Ge, La and Nd in plants. Thus, measures in soil management hold promise for enhanced phytoextraction of Ge and predominantly light REEs from soils, however, the impact of acidifying fertilizers and other soil amendments on the phytoextraction of Ge and REEs remain a field for further investigations. These studies have been carried out in the framework of the PhytoGerm project financed by the Federal Ministry of Education and Research, Germany.

Spatial P heterogeneity in forest soil: Influence on microbial P uptake and community structure

NASA Astrophysics Data System (ADS)

Zilla, Thomas; Angulo-Schipper, Bridith; Méndez, Juan Carlos; Dippold, Michaela A.; Kuzyakov, Yakov; Spielvogel, Sandra

2017-04-01

Other than nitrogen, phosphorus (P) is the most important growth limiting nutrient in soils. Yet, little information is available concerning the spatial heterogeneity of P content in forest soils. More so, the effects of a homogeneous vs. heterogeneous soil P distribution on microbial P acquisition and community structure have yet to be determined. Thus, a rhizotron experiment based on a P-deficient forest soil was conducted to investigate competitive P uptake strategies of microbes. F. sylvatica-bearing rhizotrons were labeled with Fe33PO4, a relatively immobile P source native to the study soil. Homogeneous and heterogeneous P patterns were created to study the effects of spatial P heterogeneity on plant and microbial P acquisition. P mobilization by microorganisms was tracked by an improved 33P-PLFA method, linking 33P incorporation in microbes with changes in microbial community structure in soils in situ. The microbial P uptake was enhanced in rhizotrons with high P availability and in those with a patchy P distribution. Characteristic PLFAs indicate a congregation of beech-associated ectomycorrhizal fungi in P-rich patches. These ectomycorrhizal fungi are likely to strongly increase P mobilization from the used Fe33PO4 in high P habitats. In contrast, habitats with low P availability require a more complex microbial community structure without a dominant group to mobilize this inaccessible P source. Therefore, hotspots of P are likely to promote the efforts of fungal hyphae for P mobilization - an effect which decreases with lower P content. Additionally, gram positive and negative bacteria exhibit a vastly higher P uptake under increasingly patchy P distributions. However, they form a smaller portion of the microbial community than in homogeneously P enriched rhizotrons, suggesting that filamentous organisms benefit from the patchy P distribution. Thus, only a heterogeneous P distribution promotes P acquisition of forest microbial communities from mineral P sources with low bioavailability. These novel insights into the effects of spatial P distributions on forest soil community dynamics will hopefully shed further light on microbial P cycling, thereby helping to tackle the impending global P crisis.|

The impact of pH and calcium on the uptake of fluoride by tea plants (Camellia sinensis L.).

PubMed

Ruan, Jianyun; Ma, Lifeng; Shi, Yuanzhi; Han, Wenyan

2004-01-01

Tea plants (Camellia sinensis L.) accumulate large amounts of fluoride (F) from soils containing normal F concentrations. The present experiments examined the effects of pH and Ca on F uptake by this accumulating plant species. The effect of pH was assessed in two experiments, one using uptake solutions with different pHs, and the other using lime, as CaO, applied to the soil. The effect of Ca was examined by analysing F concentrations in plants supplied with varying amounts of Ca, as Ca(NO3)2, either in uptake solutions or through the soil. F uptake was highest at solution pH 5.5, and significantly lower at pH 4.0. In the soil experiment, leaf F decreased linearly with the amounts of lime, which raised the soil pH progressively from 4.32 to 4.91, 5.43, 5.89 and, finally, 6.55. Liming increased the water-soluble F content of the soil. Including Ca in the uptake solution or adding Ca to soil significantly decreased leaf F concentrations. The distribution pattern of F in tea plants was not altered by Ca treatment, with most F being allocated to leaves. The activity of F- in the uptake solution was unaffected and water-soluble F in the soil was sometimes increased by added Ca. F uptake by tea plants, which are inherently able to accumulate large quantities of F, was affected both by pH and by Ca levels in the medium. The reduced F uptake following Ca application appeared not to be due simply to the precipitation of CaF2 in solution and soil or to the complexing of Ca and F in roots, although these factors cannot be dismissed. It was more likely due to the effect of Ca on the properties of cell wall or membrane permeability in the solution experiments, and to alteration of F speciations and their quantities in soil solutions following Ca application.

Direct uptake of soil nitrogen by mosses

PubMed Central

Ayres, Edward; van der Wal, René; Sommerkorn, Martin; Bardgett, Richard D

2006-01-01

Mosses are one of the most diverse and widespread groups of plants and often form the dominant vegetation in montane, boreal and arctic ecosystems. However, unlike higher plants, mosses lack developed root and vascular systems, which is thought to limit their access to soil nutrients. Here, we test the ability of two physiologically and taxonomically distinct moss species to take up soil- and wet deposition-derived nitrogen (N) in natural intact turfs using stable isotopic techniques (15N). Both species exhibited increased concentrations of shoot 15N when exposed to either soil- or wet deposition-derived 15N, demonstrating conclusively and for the first time, that mosses derive N from the soil. Given the broad physiological and taxonomic differences between these moss species, we suggest soil N uptake may be common among mosses, although further studies are required to test this prediction. Soil N uptake by moss species may allow them to compete for soil N in a wide range of ecosystems. Moreover, since many terrestrial ecosystems are N limited, soil N uptake by mosses may have implications for plant community structure and nutrient cycling. Finally, soil N uptake may place some moss species at greater risk from N pollution than previously appreciated. PMID:17148384

Direct uptake of soil nitrogen by mosses.

PubMed

Ayres, Edward; van der Wal, René; Sommerkorn, Martin; Bardgett, Richard D

2006-06-22

Mosses are one of the most diverse and widespread groups of plants and often form the dominant vegetation in montane, boreal and arctic ecosystems. However, unlike higher plants, mosses lack developed root and vascular systems, which is thought to limit their access to soil nutrients. Here, we test the ability of two physiologically and taxonomically distinct moss species to take up soil- and wet deposition-derived nitrogen (N) in natural intact turfs using stable isotopic techniques (15N). Both species exhibited increased concentrations of shoot 15N when exposed to either soil- or wet deposition-derived 15N, demonstrating conclusively and for the first time, that mosses derive N from the soil. Given the broad physiological and taxonomic differences between these moss species, we suggest soil N uptake may be common among mosses, although further studies are required to test this prediction. Soil N uptake by moss species may allow them to compete for soil N in a wide range of ecosystems. Moreover, since many terrestrial ecosystems are N limited, soil N uptake by mosses may have implications for plant community structure and nutrient cycling. Finally, soil N uptake may place some moss species at greater risk from N pollution than previously appreciated.

Models for root water uptake under deficit irrigation

NASA Astrophysics Data System (ADS)

Lazarovitch, Naftali; Krounbi, Leilah; Simunek, Jirka

2010-05-01

Modern agriculture, with its dependence on irrigation, fertilizers, and pesticide application, contributes significantly to the water and solute influx through the soil into the groundwater, specifically in arid areas. The quality and quantity of this water as it passes through the vadose zone is influenced primarily by plant roots. Root water uptake is a function of both a physical root parameter, commonly referred to as the root length density, and the soil water status. The location of maximum water uptake in a homogenous soil profile of uniform water content and hydraulic conductivity occurs in the soil layer containing the largest root length density. Under field conditions, in a drying soil, plants are both subject to, and the source of, great spatial variability in the soil water content. The upper soil layers containing the bulk of the root zone are usually the most water depleted, while the deeper regions of the soil profile containing fewer roots are wetter. Changes in the physiological functioning of plants have been shown to result from extended periods of water stress, but the short term effects of water stress on root water uptake are less well understood. While plants can minimize transpiration and the resulting growth rates under limiting conditions to conserve water, many plants maintain a constant potential transpiration rate long after the commencement of the drying process. Compensatory uptake, whereby plants respond to non-uniform, limiting conditions by increasing water uptake from areas in the root zone characterized by more favorable conditions, is one such mechanism by which plants sustain potential transpiration rates in drying soils. The development of models which accurately characterize temporal and spatial root water uptake patterns is important for agricultural resource optimization, upon which subsequent management decisions affecting resource conservation and environmental pollution are based. Numerical simulations of root water uptake in various irrigation and fertilization regimes provide a much-needed alternative to tiring and expensive field work. These simulations can aid in raising agricultural water use efficiency while preserving soil and water resources. In this research, controlled lab experiments were carried out in soil-packed lysimeters designed for plant cultivation. Both the water balance of the growing plants as well as the temporary matric head distribution in the soil profile were calculated and measured. The experiment was conducted with sweet sorghum grown in two different soil profiles with different hydraulic properties. The experiment provided the data necessary to calculate the parameters of various models used to simulate root water uptake, by using an inverse solution method imbedded in the HYDRUS-1D code. The observed increase in uptake from the wetter soil regions under drying conditions, as measured and calculated, sheds light on the dominant role of soil hydraulic properties over the root distribution, and consequently root water uptake.

Protozoa enhance foraging efficiency of arbuscular mycorrhizal fungi for mineral nitrogen from organic matter in soil to the benefit of host plants.

PubMed

Koller, Robert; Rodriguez, Alia; Robin, Christophe; Scheu, Stefan; Bonkowski, Michael

2013-07-01

Dead organic matter (OM) is a major source of nitrogen (N) for plants. The majority of plants support N uptake by symbiosis with arbuscular mycorrhizal (AM) fungi. Mineralization of N is regulated by microfauna, in particular, protozoa grazing on bacteria. We hypothesized that AM fungi and protozoa interactively facilitate plant N nutrition from OM. In soil systems consisting of an OM patch and a root compartment, plant N uptake and consequences for plant carbon (C) allocation were investigated using stable isotopes. Protozoa mobilized N by consuming bacteria, and the mobilized N was translocated via AM fungi to the host plant. The presence of protozoa in both the OM and root compartment stimulated photosynthesis and the translocation of C from the host plant via AM fungi into the OM patch. This stimulated microbial activity in the OM patch, plant N uptake from OM and doubled plant growth. The results indicate that protozoa increase plant growth by both mobilization of N from OM and by protozoa-root interactions, resulting in increased C allocation to roots and into the rhizosphere, thereby increasing plant nutrient exploitation. Hence, mycorrhizal plants need to interact with protozoa to fully exploit N resources from OM. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Critical soil conditions for oxygen stress to plant roots: Substituting the Feddes-function by a process-based model

NASA Astrophysics Data System (ADS)

Bartholomeus, Ruud P.; Witte, Jan-Philip M.; van Bodegom, Peter M.; van Dam, Jos C.; Aerts, Rien

2008-10-01

SummaryEffects of insufficient soil aeration on the functioning of plants form an important field of research. A well-known and frequently used utility to express oxygen stress experienced by plants is the Feddes-function. This function reduces root water uptake linearly between two constant pressure heads, representing threshold values for minimum and maximum oxygen deficiency. However, the correctness of this expression has never been evaluated and constant critical values for oxygen stress are likely to be inappropriate. On theoretical grounds it is expected that oxygen stress depends on various abiotic and biotic factors. In this paper, we propose a fundamentally different approach to assess oxygen stress: we built a plant physiological and soil physical process-based model to calculate the minimum gas filled porosity of the soil ( ϕgas_min) at which oxygen stress occurs. First, we calculated the minimum oxygen concentration in the gas phase of the soil needed to sustain the roots through (micro-scale) diffusion with just enough oxygen to respire. Subsequently, ϕgas_min that corresponds to this minimum oxygen concentration was calculated from diffusion from the atmosphere through the soil (macro-scale). We analyzed the validity of constant critical values to represent oxygen stress in terms of ϕgas_min, based on model simulations in which we distinguished different soil types and in which we varied temperature, organic matter content, soil depth and plant characteristics. Furthermore, in order to compare our model results with the Feddes-function, we linked root oxygen stress to root water uptake (through the sink term variable F, which is the ratio of actual and potential uptake). The simulations showed that ϕgas_min is especially sensitive to soil temperature, plant characteristics (root dry weight and maintenance respiration coefficient) and soil depth but hardly to soil organic matter content. Moreover, ϕgas_min varied considerably between soil types and was larger in sandy soils than in clayey soils. We demonstrated that F of the Feddes-function indeed decreases approximately linearly, but that actual oxygen stress already starts at drier conditions than according to the Feddes-function. How much drier is depended on the factors indicated above. Thus, the Feddes-function might cause large errors in the prediction of transpiration reduction and growth reduction through oxygen stress. We made our method easily accessible to others by implementing it in SWAP, a user-friendly soil water model that is coupled to plant growth. Since constant values for ϕgas_min in plant and hydrological modeling appeared to be inappropriate, an integrated approach, including both physiological and physical processes, should be used instead. Therefore, we advocate using our method in all situations where oxygen stress could occur.

Inorganic phosphorus fertilizer ameliorates maize growth by reducing metal uptake, improving soil enzyme activity and microbial community structure.

PubMed

Wu, Wencheng; Wu, Jiahui; Liu, Xiaowen; Chen, Xianbin; Wu, Yingxin; Yu, Shixiao

2017-09-01

Recently, several studies have showed that both organic and inorganic fertilizers are effective in immobilizing heavy metals at low cost, in comparison to other remediation strategies for heavy metal-contaminated farmlands. A pot trial was conducted in this study to examine the effects of inorganic P fertilizer and organic fertilizer, in single application or in combination, on growth of maize, heavy metal availabilities, enzyme activities, and microbial community structure in metal-contaminated soils from an electronic waste recycling region. Results showed that biomass of maize shoot and root from the inorganic P fertilizer treatments were respectively 17.8 and 10.0 folds higher than the un-amended treatments (CK), while the biomass in the organic fertilizer treatments was only comparable to the CK. In addition, there were decreases of 85.0% in Cd, 74.3% in Pb, 66.3% in Cu, and 91.9% in Zn concentrations in the roots of maize grown in inorganic P fertilizer amended soil. Consistently, urease and catalase activities in the inorganic P fertilizer amended soil were 3.3 and 2.0 times higher than the CK, whereas no enhancement was observed in the organic fertilizer amended soil. Moreover, microbial community structure was improved by the application of inorganic P fertilizer, but not by organic fertilizer; the beneficial microbial groups such as Kaistobacter and Koribacter were most frequently detected in the inorganic P fertilizer amended soil. The negligible effect from the organic fertilizer might be ascribed to the decreased pH value in soils. The results suggest that the application of inorganic P fertilizer (or in combination with organic fertilizer) might be a promising strategy for the remediation of heavy metals contaminated soils in electronic waste recycling region. Copyright © 2017. Published by Elsevier Inc.

Uptake and translocation of imidacloprid, clothianidin and flupyradifurone in seed-treated soybeans.

PubMed

Stamm, Mitchell D; Heng-Moss, Tiffany M; Baxendale, Frederick P; Siegfried, Blair D; Blankenship, Erin E; Nauen, Ralf

2016-06-01

Seed treatment insecticides have become a popular management option for early-season insect control. This study investigated the total uptake and translocation of seed-applied [(14) C]imidacloprid, [(14) C]clothianidin and [(14) C]flupyradifurone into different plant parts in three soybean vegetative stages (VC, V1 and V2). The effects of soil moisture stress on insecticide uptake and translocation were also assessed among treatments. We hypothesized that (1) uptake and translocation would be different among the insecticides owing to differences in water solubility, and (2) moisture stress would increase insecticide uptake and translocation. Uptake and translocation did not follow a clear trend in the three vegetative stages. Initially, flupyradifurone uptake was greater than clothianidin uptake in VC soybeans. In V1 soybeans, differences in uptake among the three insecticides were not apparent and unaffected by soil moisture stress. Clothianidin was negatively affected by soil moisture stress in V2 soybeans, while imidacloprid and flupyradifurone were unaffected. Specifically, soil moisture stress had a positive effect on the distribution of flupyradifurone in leaves. This was not observed with the neonicotinoids. This study enhances our understanding of the uptake and distribution of insecticides used as seed treatments in soybean. The uptake and translocation of these insecticides differed in response to soil moisture stress. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

The Pitcher Plant Sarracenia purpurea Can Directly Acquire Organic Nitrogen and Short-Circuit the Inorganic Nitrogen Cycle

PubMed Central

Karagatzides, Jim D.; Butler, Jessica L.; Ellison, Aaron M.

2009-01-01

Background Despite the large stocks of organic nitrogen in soil, nitrogen availability limits plant growth in many terrestrial ecosystems because most plants take up only inorganic nitrogen, not organic nitrogen. Although some vascular plants can assimilate organic nitrogen directly, only recently has organic nitrogen been found to contribute significantly to the nutrient budget of any plant. Carnivorous plants grow in extremely nutrient-poor environments and carnivory has evolved in these plants as an alternative pathway for obtaining nutrients. We tested if the carnivorous pitcher plant Sarracenia purpurea could directly take up intact amino acids in the field and compared uptake of organic and inorganic forms of nitrogen across a gradient of nitrogen deposition. We hypothesized that the contribution of organic nitrogen to the nitrogen budget of the pitcher plant would decline with increasing nitrogen deposition. Methodology and Principal Findings At sites in Canada (low nitrogen deposition) and the United States (high nitrogen deposition), individual pitchers were fed two amino acids, glycine and phenylalanine, and inorganic nitrogen (as ammonium nitrate), individually and in mixture. Plants took up intact amino acids. Acquisition of each form of nitrogen provided in isolation exceeded uptake of the same form in mixture. At the high deposition site, uptake of organic nitrogen was higher than uptake of inorganic nitrogen. At the low deposition site, uptake of all three forms of nitrogen was similar. Completeness of the associated detritus-based food web that inhabits pitcher-plant leaves and breaks down captured prey had no effect on nitrogen uptake. Conclusions and Significance By taking up intact amino acids, Sarracenia purpurea can short-circuit the inorganic nitrogen cycle, thus minimizing potential bottlenecks in nitrogen availability that result from the plant's reliance for nitrogen mineralization on a seasonally reconstructed food web operating on infrequent and irregular prey capture. PMID:19582167

The assessment of the energetic compound 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-Hexaazaisowurtzitane (CL-20) degradability in soil.

PubMed

Strigul, Nikolay; Braida, Washington; Christodoulatos, Christos; Balas, Wendy; Nicolich, Steven

2006-01-01

CL-20 is a relatively new energetic compound with applications in explosive and propellant formulations. Currently, information about the fate of CL-20 in ecological systems is scarce. The aim of this study is to evaluate the biodegradability of CL-20 in soil environments. Four soils were used where initial CL-20 concentrations (above water solubility) ranged from 125 to 1500 mg of CL-20 per kg dry soil (corresponding to the concentrations derived from unexploded ordnance, low order detonation, or manufacturing spills). CL-20 appears to be biodegradable in soil under anaerobic conditions, and additions of organic substrates can substantially accelerate this process. However, CL-20 is not degraded in soil under aerobic conditions kept in the dark at temperatures up to 30 degrees C without organic amendments. Additions of starch or cellulose promote the biodegradation of CL-20 under aerobic conditions. Soil microbial community mediated biodegradation and plant uptake appears to enhance CL-20 biodegradation, the latter suggesting a possible route for CL-20 to entry in the food chain.

Soil Methane uptake Model (MeMo): a process based model for global methane consumption by soils

NASA Astrophysics Data System (ADS)

Murguia-Flores, F.; Arndt, S.; Ganesan, A.; Hornibrook, E. R. C.; Murray-Tortarolo, G.

2016-12-01

Atmospheric methane (CH4) is a powerful greenhouse gas, responsible for 20% of global warming. The only terrestrial and biological sink is the uptake in the soils by methanotrophic bacteria, however there is large spatial and temporal heterogeneity in the magnitude of this sink. One way to provide a global understanding of this process is by using a mathematical model to simulate the mechanisms of the underlying physical and biological drivers. Here we present the soil Methane uptake Model (MeMo) a process-based model for the global methane consumption by soils. We have built on previous models by Ridgwell et al., (1999) and Curry et al., (2007), by making several advances. First, a general analytical solution of the one-dimensional diffusion-reaction equation was implemented that accounts for a maximum uptake depth and for a CH4 flux coming from below the surface (i.e. CH4 production in the soil). Secondly, we revisited and improved the effect of nitrogen inhibition, soil moisture and soil temperature on CH4 uptake in the light of newly available data and advances in our understanding of these drivers. Using observed forcing data, we estimated a global mean CH4 uptake of 31.2±1.2 Tg y-1 for the period 1990-2009 with an increasing trend of 0.1 Tg y-2. Our model represented the latitudinal pattern of uptake shown by field observations, with the highest uptake per unit area occurring over dry tropical forest and the lowest uptake in the polar desert. The highest seasonality occurred in the Northern Hemisphere, showing that the main driver of variability in a given year is from a combination of temperature and soil moisture. Our model showed that CH4 uptake is reduced from previous studies by approximately 10% at the regions with the highest nitrogen deposition: East Asia and Europe. Finally, our results suggest that more field measurements are needed to improve the modelling of the process, such as the basal oxidation rate for different ecosystems, the Q10 temperature response across different conditions and long term field CH4 uptake records.

Advances in Phytoremediation and Rhizoremediation

NASA Astrophysics Data System (ADS)

Macek, Tomas; Uhlik, Ondrej; Jecna, Katerina; Novakova, Martina; Lovecka, Petra; Rezek, Jan; Dudkova, Vlasta; Stursa, Petr; Vrchotova, Blanka; Pavlikova, Daniela; Demnerova, Katerina; Mackova, Martina

Phytoremediation, with the associated role of rhizospheric microorganisms, is an important tool in bioremediation processes. Plants have an inherent ability to detoxify some xenobiotics and remove compounds from soil by direct uptake of the contaminants followed by subsequent transformation, transport and product accumulation, using enzymes similar to detoxification enzymes in mammals. Being autotrophic organisms, plants do not utilize organic compounds for their energy and carbon metabolism. As a consequence, they usually lack the catabolic enzymes necessary to achieve full mineralization of organic molecules. Plants can be used for removal of both inorganic and organic xenobiotics present in the soil, water and air. The chapter summarizes the classical approaches and possibilities for increasing effectiveness of phyto-and rhizo-remediation using genetically modified organisms. Perspectives are presented related to the use of molecular methods, including metagenomics and stable isotope probing, for obtaining deeper knowledge with a view to influencing the composition of consortia of organisms living in the contaminated environment.

The interaction of genotype and environment determines variation in the maize kernal ionome

USDA-ARS?s Scientific Manuscript database

Plants obtain soil-resident elements that support growth and metabolism via water-mediated flow due to transpiration and active transport processes. The availability of elements in the environment can interact with the genetic capacity of the organism to modulate element uptake through plastic adapt...

Atmospheric nitrous oxide uptake in boreal spruce forest soil

NASA Astrophysics Data System (ADS)

Siljanen, Henri; Welti, Nina; Heikkinen, Juha; Biasi, Christina; Martikainen, Pertti

2017-04-01

Nitrous oxide (N2O) uptake from the atmosphere has been found in forest soils but environmental factors controlling the uptake and its atmospheric impact are poorly known. We measured N2O fluxes over growing season in a boreal spruce forest having control plots and plots with long nitrogen fertilization history. Also methane (CH4) fluxes were measured to compare the atmospheric impact of N2O and CH4fluxes. Soil chemical and physical characteristics and climatic conditions were measured as background data. Nitrous oxide consumption and uptake mechanisms were measured in complementary laboratory incubation experiments using stable isotope approaches. Gene transcript numbers of nitrous oxide reductase (nosZ) I and II genes were quantified along the incubation with elevated N2O atmosphere. The spruce forests without fertilization history showed highest N2O uptake rates whereas pine forest had low emissions. Nitrous oxide uptake correlated positively with soil moisture, high soil silt content, and low temperature. Nitrous oxide uptake varied seasonally, being highest in spring and autumn when temperature was low and water content was high. The spruce forest was sink for CH4.Methane fluxes were decoupled from the N2O fluxes (i.e. when the N2O uptake was high the CH4 uptake was low). By using GWP approach, the cooling effect of N2O uptake was on average 30% of the cooling effect of CH4 uptake in spruce forest without fertilization. Anoxic conditions promoted higher N2O consumption rates in all soils. Gene transcription of nosZ-I genes were activated at beginning of the incubation. However, atypical/clade-II nosZ was not detected. These results suggests, that also N2O uptake rates have to be considered when accounting for the GHG budget of spruce forests.

Competition between roots and microorganisms for phosphorus: A novel 33P labeling approach

NASA Astrophysics Data System (ADS)

Zilla, Thomas; Kuzyakov, Yakov; Zavišiæ, Aljoša; Polle, Andrea

2015-04-01

While organic N mineralization exhibits clear seasonal uptake dynamics, knowledge about seasonal variation in microbial P uptake and mineralization is scarce. We hypothesize that the dynamics of P uptake and mineralization by microorganisms in temperate forest soils exhibit a seasonality anti-cyclic to plant P uptake. Therefore, the ratio of microbial P to labile P increases by the transition from acquiring ecosystems (in spring) to recycling ones (in fall). To investigate this, intact soil-plant mesocosms containing Ah horizon with 1 year old F. sylvatica were removed from the P-rich field site Bad Brueckenau and the P-depleted field site Luess in Germany. During incubation under controlled conditions, seasonal pulse labeling by 33P-orthophosphate was performed at 5 time points over the course of one year. 33P recovery in microbial compounds of organic and mineral soil horizons was determined 7 and 30 days after the labeling. This procedure will account for temporal changes in P allocation and also considers the rather slow P transport from the mycorrhiza into the plants and other microorganisms. For the first time we analyzed the 33P incorporation into total PLFA and consequently provide a new technique for the analysis of P uptake by microorganisms, which has clear advantages compared to P quantification after chloroform fumigation. Polar lipids are hereby extracted with a Frostegård-modified Bligh-and-Dyer buffer, i.e. a single phase mixture of chloroform, methanol and citrate buffer (0.8:1:2, v:v:v). Phospholipids (PLFA) are isolated and purified by solid phase extraction via a silica gel column chromatography. Subsequently, PLFA are hydrolyzed and the resulting fatty acids derivatized by methylation. The fatty acid methyl esters were extracted with n-hexane and measured by GC/MS to investigate the composition of the microbial community. The remaining extract, containing head groups, phosphate units and glycerol backbones, was used to determine 33P activity and recovery in the microbial membrane lipids with a multi-purpose scintillation counter. This approach offers the unique possibility to quantify P fluxes through the microbial network. For the first time, P cycling can be linked to changes in microbial community structure and activity in soils in situ.

Cadmium Accumulation Risk in Vegetables and Rice in Southern China: Insights from Solid-Solution Partitioning and Plant Uptake Factor.

PubMed

Yang, Yang; Wang, Meie; Chen, Weiping; Li, Yanling; Peng, Chi

2017-07-12

Solid-solution partitioning coefficient (K d ) and plant uptake factor (PUF) largely determine the solubility and mobility of soil Cd to food crops. A four-year regional investigation was conducted in contaminated vegetable and paddy fields of southern China to quantify the variability in K d and PUF. The distributions of K d and PUF characterizing transfers of Cd from soil to vegetable and rice are probabilistic in nature. Dynamics in soil pH and soil Zn greatly affected the variations of K d . In addition to soil pH, soil organic matter had a major influence on PUF variations in vegetables. Heavy leaching of soil Mn caused a higher Cd accumulation in rice grain. Dietary ingestion of 85.5% of the locally produced vegetable and rice would have adverse health risks, with rice consumption contributing 97.2% of the risk. A probabilistic risk analysis based on derived transfer function reveals the amorphous Mn oxide content exerts a major influence on Cd accumulation in rice in pH conditions below 5.5. Risk estimation and field experiments show that to limit the Cd concentration in rice grains, soil management strategies should include improving the pH and soil Mn concentration to around 6.0 and 345 mg kg -1 , respectively. Our work illustrates that re-establishing a balance in trace elements in soils' labile pool provides an effective risk-based approach for safer crop practices.

Hexavalent chromium availability and phytoremediation potential of Cichorium spinosum as affect by manure, zeolite and soil ageing.

PubMed

Antoniadis, Vasileios; Polyzois, Theologos; Golia, Evaggelia E; Petropoulos, Spyridon A

2017-03-01

Cichorium spinosum (spiny chicory) is a wild edible vegetable, and a possible suitable species for Cr(VI)-phytoremediation. There are three approaches for altering Cr(VI) dynamics: reduction to Cr(III) by organic matter addition, soil ageing, and Cr(VI) retention by high binding capacity materials added to soil, e.g., zeolite. Our aim was to assess spiny chicory as a phytoremediation species in relation to these three methods of altering Cr(VI) soil dynamics. There were 5 treatments: control (C); soil with 100 mg kg -1 Cr(VI) (S); soil with zeolite plus 100 mg kg -1 Cr(VI) (Z); soil with manure plus 100 mg kg -1 Cr(VI) (M); and soil added with 100 mg kg -1 Cr(VI) one year before this experiment (AS, "aged soil"). In soil, Cr(VI) was higher at S, while Z, M and AS were lower. In plant, Cr(VI) at Z, S, and AS were similar and significantly higher than M. This indicates that added manure decrease Cr(VI) availability to chicory due to the formation of organometallic complexes. However, chicory uptake amounted to 0.26-0.40 kg Cr(VI) ha -1 for Z, S, and AS, while uptake at M was lower. In conclusion, manure addition was more successful in decreasing Cr(VI) bioavailability, but it also slowed Cr(VI)-phytoremediation process. Copyright © 2016. Published by Elsevier Ltd.

Nitrogen retention across a gradient of 15N additions to an unpolluted temperate forest soil in Chile

USGS Publications Warehouse

Perakis, Steven S.; Compton, J.E.; Hedin, L.O.

2005-01-01

Accelerated nitrogen (N) inputs can drive nonlinear changes in N cycling, retention, and loss in forest ecosystems. Nitrogen processing in soils is critical to understanding these changes, since soils typically are the largest N sink in forests. To elucidate soil mechanisms that underlie shifts in N cycling across a wide gradient of N supply, we added 15NH415NO3 at nine treatment levels ranging in geometric sequence from 0.2 kg to 640 kg NA? ha-1A? yr-1 to an unpolluted old-growth temperate forest in southern Chile. We recovered roughly half of tracers in 0-25 cm of soil, primarily in the surface 10 cm. Low to moderate rates of N supply failed to stimulate N leaching, which suggests that most unrecovered 15N was transferred from soils to unmeasured sinks above ground. However, soil solution losses of nitrate increased sharply at inputs > 160 kg NA? ha-1A? yr-1, corresponding to a threshold of elevated soil N availability and declining 15N retention in soil. Soil organic matter (15N in soils at the highest N inputs and may explain a substantial fraction of the 'missing N' often reported in studies of fates of N inputs to forests. Contrary to expectations, N additions did not stimulate gross N cycling, potential nitrification, or ammonium oxidizer populations. Our results indicate that the nonlinearity in N retention and loss resulted directly from excessive N supply relative to sinks, independent of plant-soil-microbial feedbacks. However, N additions did induce a sharp decrease in microbial biomass C:N that is predicted by N saturation theory, and which could increase long-term N storage in soil organic matter by lowering the critical C:N ratio for net N mineralization. All measured sinks accumulated 15N tracers across the full gradient of N supply, suggesting that short-term nonlinearity in N retention resulted from saturation of uptake kinetics, not uptake capacity, in plant, soil, and microbial pools.

Emerging investigator series: development and application of polymeric electrospun nanofiber mats as equilibrium-passive sampler media for organic compounds.

PubMed

Qian, Jiajie; Jennings, Brandon; Cwiertny, David M; Martinez, Andres

2017-11-15

We fabricated a suite of polymeric electrospun nanofiber mats (ENMs) and investigated their performance as next-generation passive sampler media for environmental monitoring of organic compounds. Electrospinning of common polymers [e.g., polyacrylonitrile (PAN), polymethyl methacrylate (PMMA), and polystyrene (PS), among others] yielded ENMs with reproducible control of nanofiber diameters (from 50 to 340 nm). The ENM performance was investigated initially with model hydrophilic (aniline and nitrobenzene) and hydrophobic (selected PCB congeners and dioxin) compounds, generally revealing fast chemical uptake into all of these ENMs, which was well described by a one compartment, first-order kinetic model. Typical times to reach 90% equilibrium (t 90% ) were ≤7 days under mixing conditions for all the ENMs and <0.5 days for the best performing materials under static (i.e., no mixing) conditions. Collectively, these short equilibrium timescales suggest that ENMs may be used in the field as an equilibrium-passive sampler, at least for our model compounds. Equilibrium partitioning coefficients (K ENM-W , L kg -1 ) averaged 2 and 4.7 log units for the hydrophilic and hydrophobic analytes, respectively. PAN, PMMA and PS were prioritized for additional studies because they exhibited not only the greatest capacity for simultaneous uptake of the entire model suite (log K ENM-W ∼1.5-6.2), but also fast uptake. For these optimized ENMs, the rates of uptake into PAN and PMMA were limited by aqueous phase diffusion to the nanofiber surface, and the rate-determining step for PS was analyte specific. Sorption isotherms also revealed that the environmental application of these optimized ENMs would occur within the linear uptake regime. We examined the ENM performance for the measurement of pore water concentrations from spiked soil and freshwater sediments. Soil and sediment studies not only yielded reproducible pore water concentrations and comparable values to other passive sampler materials, but also provided practical insights into ENM stability and fouling in such systems. Furthermore, fast uptake for a suite of structurally diverse hydrophilic and moderately hydrophobic compounds was obtained for PAN and PS, with t 90% ranging from 0.01 to 4 days with mixing and K ENM-W values ranging from 1.3 to 3.2 log units. Our findings show promise for the development and use of ENMs as equilibrium-passive samplers for a range of organic pollutants across soil/sediment and water systems.

Scaling of physical constraints at the root-soil interface to macroscopic patterns of nutrient retention in ecosystems.

PubMed

Gerber, Stefan; Brookshire, E N Jack

2014-03-01

Nutrient limitation in terrestrial ecosystems is often accompanied with maintaining a nearly closed vegetation-soil nutrient cycle. The ability to retain nutrients in an ecosystem requires the capacity of the plant-soil system to draw down nutrient levels in soils effectually such that export concentrations in soil solutions remain low. Here we address the physical constraints of plant nutrient uptake that may be limited by the diffusive movement of nutrients in soils, by the uptake at the root/mycorrhizal surface, and from interactions with soil water flow. We derive an analytical framework of soil nutrient transport and uptake and predict levels of plant available nutrient concentration and residence time. Our results, which we evaluate for nitrogen, show that the physical environment permits plants to lower soil solute concentration substantially. Our analysis confirms that plant uptake capacities in soils are considerable, such that water movement in soils is generally too small to significantly erode dissolved plant-available nitrogen. Inorganic nitrogen concentrations in headwater streams are congruent with the prediction of our theoretical framework. Our framework offers a physical-based parameterization of nutrient uptake in ecosystem models and has the potential to serve as an important tool toward scaling biogeochemical cycles from individual roots to landscapes.

Phytoremediation -- a practical capping alternative

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beath, J.M.; Peak, M.J.

1997-12-31

Much literature has been devoted recently to the use of various plant species for the uptake of heavy metals and organic contaminants. Other uses for plants as part of the remediation process are growing in perceived effectiveness. Consequently, this paper deals with two other equally important potential uses of plants to address environmental problems that are just now evolving to the field trial stage: the use of plants to remediate organic pollutants; and the use of plants to control the rainfall-driven leaching of contaminants and the subsequent delivery to underlying groundwater. The traditional Resource Conservation and Recovery Act (RCRA) approachmore » to capping landfills will be contrasted with the potential benefits of using plants that can balance incoming rainfall with evapotranspiration, as well as plants which can act on organic constituents in soil or sludge by either uptake or by promoting microbial activity in soil. This paper compares traditional RCRA capping costs to those for a phytoremediation capping alternative, whose benefits include significantly lower implementation cost and continued remediation. This paper discusses important elements of a successful approach to phytoremediation including: species selection, implementation techniques, cost-efficient monitoring, regulatory aspects, project timing, and realistic expectations.« less

Growth parameters influencing uptake of chlordecone by Miscanthus species.

PubMed

Liber, Yohan; Létondor, Clarisse; Pascal-Lorber, Sophie; Laurent, François

2018-05-15

Because of its high persistence in soils, t 1/2 =30years, chlordecone (CLD) was classified as a persistent organic pollutant (POP) by the Stockholm Convention in 2009.The distribution of CLD over time has been heterogeneous, ranging from banana plantations to watersheds, and contaminating all environmental compartments. The aims of this study were to (i) evaluate the potential of Miscanthus species to extract chlordecone from contaminated soils, (ii) identify the growth parameters that influence the transfer of CLD from the soil to aboveground plant parts. CLD uptake was investigated in two species of Miscanthus, C4 plants adapted to tropical climates. M. sinensis and M.×giganteus were transplanted in a soil spiked with [ 14 C]CLD at environmental concentrations (1mgkg -1 ) under controlled conditions. Root-shoot transfer of CLD was compared in the two species after two growing periods (2 then 6months) after transplantation. CLD was found in all plant organs, roots, rhizomes, stems, leaves, and even flower spikes. The highest concentration of CLD was in the roots, 5398±1636 (M.×giganteus) and 14842±3210ngg -1 DW (M. sinensis), whereas the concentration in shoots was lower, 152±28 (M.×giganteus) and 266±70ngg -1 DW (M. sinensis) in soil contaminated at 1mgkg -1 . CLD translocation led to an acropetal gradient from the bottom to the top of the plants. CLD concentrations were also monitored over two complete growing periods (10months) in M. sinensis grown in 8.05mgkg -1 CLD contaminated soils. Concentrations decreased in M. sinensis shoots after the second growth period due to the increase in organic matters in the vicinity of the roots. Results showed that, owing to their respective biomass production, the two species were equally efficient at phytoextraction of CLD. Copyright © 2017. Published by Elsevier B.V.

Improving prediction of metal uptake by Chinese cabbage (Brassica pekinensis L.) based on a soil-plant stepwise analysis.

PubMed

Zhang, Sha; Song, Jing; Gao, Hui; Zhang, Qiang; Lv, Ming-Chao; Wang, Shuang; Liu, Gan; Pan, Yun-Yu; Christie, Peter; Sun, Wenjie

2016-11-01

It is crucial to develop predictive soil-plant transfer (SPT) models to derive the threshold values of toxic metals in contaminated arable soils. The present study was designed to examine the heavy metal uptake pattern and to improve the prediction of metal uptake by Chinese cabbage grown in agricultural soils with multiple contamination by Cd, Cu, Ni, Pb, and Zn. Pot experiments were performed with 25 historically contaminated soils to determine metal accumulation in different parts of Chinese cabbage. Different soil bioavailable metal fractions were determined using different extractants (0.43M HNO3, 0.01M CaCl2, 0.005M DTPA, and 0.01M LWMOAs), soil moisture samplers, and diffusive gradients in thin films (DGT), and the fractions were compared with shoot metal uptake using both direct and stepwise multiple regression analysis. The stepwise approach significantly improved the prediction of metal uptake by cabbage over the direct approach. Strongly pH dependent or nonlinear relationships were found for the adsorption of root surfaces and in root-shoot uptake processes. Metals were linearly translocated from the root surface to the root. Therefore, the nonlinearity of uptake pattern is an important explanation for the inadequacy of the direct approach in some cases. The stepwise approach offers an alternative and robust method to study the pattern of metal uptake by Chinese cabbage (Brassica pekinensis L.). Copyright © 2016. Published by Elsevier B.V.

Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance.

PubMed

Kuzyakov, Yakov; Xu, Xingliang

2013-05-01

Demand of all living organisms on the same nutrients forms the basis for interspecific competition between plants and microorganisms in soils. This competition is especially strong in the rhizosphere. To evaluate competitive and mutualistic interactions between plants and microorganisms and to analyse ecological consequences of these interactions, we analysed 424 data pairs from 41 (15)N-labelling studies that investigated (15)N redistribution between roots and microorganisms. Calculated Michaelis-Menten kinetics based on K(m) (Michaelis constant) and V(max) (maximum uptake capacity) values from 77 studies on the uptake of nitrate, ammonia, and amino acids by roots and microorganisms clearly showed that, shortly after nitrogen (N) mobilization from soil organic matter and litter, microorganisms take up most N. Lower K(m) values of microorganisms suggest that they are especially efficient at low N concentrations, but can also acquire more N at higher N concentrations (V(max)) compared with roots. Because of the unidirectional flow of nutrients from soil to roots, plants are the winners for N acquisition in the long run. Therefore, despite strong competition between roots and microorganisms for N, a temporal niche differentiation reflecting their generation times leads to mutualistic relationships in the rhizosphere. This temporal niche differentiation is highly relevant ecologically because it: protects ecosystems from N losses by leaching during periods of slow or no root uptake; continuously provides roots with available N according to plant demand; and contributes to the evolutionary development of mutualistic interactions between roots and microorganisms. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Using Phytoremediation to Clean Up Contamination at Military Installations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zellmer, S.D.; Hinchman, R.R.; Negri, M.C.

1997-07-01

During and following World War II, wastes from the production of munitions and other military materials were disposed of using the best available practices acceptable at that time. However, these disposal methods often contaminated soil and groundwater with organic compounds and metals that require cleanup under current regulations. An emerging technology for cleaning contaminated soils and shallow groundwater is phytoremediation, an environmentally friendly, low- cost, and low-tech process. Phytoremediation encompasses all plant- influenced biological, chemical, and physical processes that aid in the uptake, degradation, and metabolism of contaminants by either plants or free-living organisms in the plant`s rhizosphere. A phytoremediationmore » system can be viewed as a biological, solar-driven, pump-and-treat system with an extensive, self-extending uptake network (the root system) that enhances the soil and below-ground ecosystem for subsequent productive use. Argonne National Laboratory (ANL) has been conducting basic and applied research in phytoremediation since 1990. Initial greenhouse studies evaluated salt-tolerant wetland plants to clean UP and reduce the volume of salty `produced water` from petroleum wells. Results of these studies were used to design a bioreactor for processing produced water that is being demonstrated at a natural gas well in Oklahoma; this system can reduce produced water volume by about 75% in less than eight days, representing substantial savings in waste disposal cost. During 1994, ANL conducted a TNT plant uptake and in situ remediation study in a ridge-and-furrow area used for the disposal of pink water at the Joliet Army Ammunition Plant.« less

Iron and zinc isotope fractionation during uptake and translocation in rice (Oryza sativa) grown in oxic and anoxic soils

NASA Astrophysics Data System (ADS)

Arnold, Tim; Markovic, Tamara; Kirk, Guy J. D.; Schönbächler, Maria; Rehkämper, Mark; Zhao, Fangjie J.; Weiss, Dominik J.

2015-11-01

Stable isotope fractionation is emerging quickly as a powerful novel technique to study metal uptake and translocation in plants. Fundamental to this development is a thorough understanding of the processes that lead to isotope fractionation under differing environmental conditions. In this study, we investigated Zn and Fe isotope fractionation in rice grown to maturity in anaerobic and aerobic soils under greenhouse conditions. The overall Zn isotope fractionation between the soil and above ground plant material was negligible in aerobic soil but significant in anaerobic soil with isotopically lighter Zn in the rice plant. The observed range of fractionation is in line with previously determined fractionations of Zn in rice grown in hydroponic solutions and submerged soils and emphasizes the effect of taking up different chemical forms of Zn, most likely free and organically complexed Zn. The Zn in the grain was isotopically lighter than in the rest of the above ground plant in rice grown in aerobic and anaerobic soils alike. This suggests that in the course of the grain loading and during the translocation within the plant important biochemical and/or biophysical processes occur. The isotope fractionation observed in the grains would be consistent with an unidirectional controlled transport from shoot to grain with a fractionation factor of α ≈ 0.9994. Iron isotopes showed an isotopic lighter signature in shoot and grain compared to the bulk soil or the leachate in aerobic and anaerobic soils alike. The negative direction of isotopic fractionation is consistent with possible changes in the redox state of Fe occurring during the uptake and translocation processes. The isotope fractionation pattern between shoots and grain material are different for Zn and Fe which finally suggests that different mechanisms operate during translocation and grain-loading in rice for these two key micronutrients.

[Crop-soil nitrogen cycling and soil organic carbon balance in black soil zone of Jilin Province based on DSSAT model].

PubMed

Yang, Jing-min; Dou, Sen; Yang, Jing-yi; Hoogenboom, Gerrit; Jiang, Xu; Zhang, Zhong-qing; Jiang, Hong-wei; Jia, Li-hui

2011-08-01

By using the CERES-Maize crop model and Century soil model in Decision Support System of Agrotechnology Transfer (DSSAT) model, this paper studied the effects of crop management parameters, fertilizer N application rate, soil initial N supply, and crop residue application on the maize growth, crop-soil N cycling, and soil organic C and N ecological balance in black soil (Mollisol) zone of Jilin Province, Northeast China. Taking 12,000-15,000 kg x hm(-2) as the target yield of maize, the optimum N application rate was 200-240 kg N x hm(-2). Under this fertilization, the aboveground part N uptake was 250-290 kg N x hm(-2), among which, 120-140 kg N x hm(-2) came from soil, and 130-150 kg N x hm(-2) came from fertilizer. Increasing the N application rate (250-420 kg N x hm(-2)) induced an obvious increase of soil residual N (63-183 kg x hm(-2)); delaying the N topdressing date also induced the increase of the residual N. When the crop residue application exceeded 6000 kg x hm(-2), the soil active organic C and N could maintain the supply/demand balance during maize growth season. To achieve the target maize yield and maintain the ecological balance of soil organic C and N in black soil zone of Jilin Province, the chemical N application rate would be controlled in the range of 200-240 kg N x hm(-2), topdressing N should be at proper date, and the application amount of crop residue would be up to 6000 kg x hm(-2).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sheppard, S.C.; Evenden, W.G.; Cornwell, T.C.

The relative depuration and uptake kinetics of contaminants should be known to interpret appropriately the use of organisms such as earthworms in environmental bioassays and monitoring. For example, 14-d earthworm bioassays should be interpreted with the knowledge that some contaminants will continue to accumulate in tissues for months. The radiotracers {sup 125}I, {sup 134}Cs, {sup 54}Mn, {sup 65}Zn, and {sup 109}Cd were applied to deciduous litter and specimens of Lumbricus terrestris were exposed, either to litter alone or to litter on the top of soil columns. Depuration was monitored for 120 d and uptake, in a separate experiment, for 20more » d. Both depuration and uptake were described using two-phase, first-order statistical models. Cut clearance had a mean half-time of 1.4 d. The mean half-time for physiological depuration decreased from I (210 d) > Cd (150 d) > Zn (69 d) > Mn (40 d) > Cs (24 d). Both the depuration and the uptake experiments were necessary to resolve even partially the multiphase processes. Earthworm/soil dry weight concentration ratios decreased from Cd > Zn > I {ge} Cs {ge} Mn. The very slow kinetics indicate that tissue concentrations will increase continuously for a long time, with important implications for subsequent food-chain transfers.« less

Influence of root-water-uptake parameterization on simulated heat transport in a structured forest soil

NASA Astrophysics Data System (ADS)

Votrubova, Jana; Vogel, Tomas; Dohnal, Michal; Dusek, Jaromir

2015-04-01

Coupled simulations of soil water flow and associated transport of substances have become a useful and increasingly popular tool of subsurface hydrology. Quality of such simulations is directly affected by correctness of its hydraulic part. When near-surface processes under vegetation cover are of interest, appropriate representation of the root water uptake becomes essential. Simulation study of coupled water and heat transport in soil profile under natural conditions was conducted. One-dimensional dual-continuum model (S1D code) with semi-separate flow domains representing the soil matrix and the network of preferential pathways was used. A simple root water uptake model based on water-potential-gradient (WPG) formulation was applied. As demonstrated before [1], the WPG formulation - capable of simulating both the compensatory root water uptake (in situations when reduced uptake from dry layers is compensated by increased uptake from wetter layers), and the root-mediated hydraulic redistribution of soil water - enables simulation of more natural soil moisture distribution throughout the root zone. The potential effect on heat transport in a soil profile is the subject of the present study. [1] Vogel T., M. Dohnal, J. Dusek, J. Votrubova, and M. Tesar. 2013. Macroscopic modeling of plant water uptake in a forest stand involving root-mediated soil-water redistribution. Vadose Zone Journal, 12, 10.2136/vzj2012.0154. The research was supported by the Czech Science Foundation Project No. 14-15201J.

Studies on uptake of trivalent and hexavalent chromium by maize (Zea mays).

PubMed

Mishra, S; Singh, V; Srivastava, S; Srivastava, R; Srivastava, M M; Dass, S; Satsangi, G P; Prakash, S

1995-05-01

Pot culture experiments were carried out to study the uptake and translocation of chromium from irrigation water when supplied in its trivalent and hexavalent states to maize plants grown in soil and sand culture. The uptake of chromium was observed to increase with increase in the concentration for both oxidation states of chromium. For the root, the observed order of uptake was CrIII sand > CrVI sand > CrIII soil > CrVI soil, whereas in the lower shoot, upper shoot and fruit the order was CrVI sand > CrVI soil > CrIII sand > CrIII soil. Significantly high uptake of chromium by roots in the sand culture (CrIII treatment) is attributed to the effect of root exudates and degradation products on the mobilization of CrIII. In aerial parts of the plants a higher uptake was observed when the initial supply was CrVI. The trends observed are explained on the basis of the redox behaviour of chromium.

A novel nanoparticle approach for imaging nutrient uptake by soil bacteria

NASA Astrophysics Data System (ADS)

O'Brien, S. L.; Whiteside, M. D.; Sholto-Douglas, D.; Antonopoulos, D. A.; Boyanov, M.; Durall, D. M.; Jones, M. D.; Lai, B.; O'Loughlin, E. J.; Kemner, K. M.

2014-12-01

The metabolic activities of soil microbes are the primary drivers of biogeochemical processes controlling the terrestrial carbon cycle, nutrient availability to plants, contaminant remediation, water quality, and other ecosystem services. However, we have a limited understanding of microbial metabolic processes such as nutrient uptake rates, substrate preferences, or how microbes and microbial metabolism are distributed throughout their habitat. Here we use a novel imaging technique with quantum dots (QDs, engineered semiconductor nanoparticles that produce size or composition-dependent fluorescence) to measure bacterial uptake of substrates of varying complexity. Cultures of two organisms differing in cell wall structure — Bacillus subtilis and Pseudomonas fluorescens — were grown in one of four ecologically relevant experimental conditions: nitrogen (N) limitation, phosphorus (P) limitation, N and P limitation, or no nutrient limitation. The cultures were then exposed to QDs with and without organic nutrients attached. X-ray fluorescence imaging was performed at 2ID-D at the Advanced Photon Source (APS) to determine the elemental distributions within both planktonic and surface-adhered (i.e, biofilms) cells. Uptake of unconjugated QDs was neglibible, and QDs conjugated to organic substrates varied depending on growth conditions and substrate, suggesting that they are a useful indicator of bacterial ecology. Cellular uptake was similar for the two bacterial species (2212 ± 273 nanoparticles per cm3 of cell volume for B. subtilis and 1682 ± 264 for P. fluorescens). On average, QD assimilation was six times greater when N or P was limiting, and cells took up about twice as much phosphoserine compared to other substrates, likely because it was the only compound providing both N and P. These results showed that regardless of their cell wall structure, bacteria can selectively take up quantifiable levels of QDs based on substrate and environmental conditions. APS images are consistent with those produced with confocal and optical microscopes, indicating that the XRF approach can detect bacterial uptake of CdSe-core QDs. These findings offer a new way to experimentally investigate basic bacterial ecology such as metabolic activity and biofilm development and function.

Soil moisture depletion under simulated drought in the Amazon: impacts on deep root uptake.

PubMed

Markewitz, Daniel; Devine, Scott; Davidson, Eric A; Brando, Paulo; Nepstad, Daniel C

2010-08-01

*Deep root water uptake in tropical Amazonian forests has been a major discovery during the last 15 yr. However, the effects of extended droughts, which may increase with climate change, on deep soil moisture utilization remain uncertain. *The current study utilized a 1999-2005 record of volumetric water content (VWC) under a throughfall exclusion experiment to calibrate a one-dimensional model of the hydrologic system to estimate VWC, and to quantify the rate of root uptake through 11.5 m of soil. *Simulations with root uptake compensation had a relative root mean square error (RRMSE) of 11% at 0-40 cm and < 5% at 350-1150 cm. The simulated contribution of deep root uptake under the control was c. 20% of water demand from 250 to 550 cm and c. 10% from 550 to 1150 cm. Furthermore, in years 2 (2001) and 3 (2002) of throughfall exclusion, deep root uptake increased as soil moisture was available but then declined to near zero in deep layers in 2003 and 2004. *Deep root uptake was limited despite high VWC (i.e. > 0.30 cm(3) cm(-3)). This limitation may partly be attributable to high residual water contents (theta(r)) in these high-clay (70-90%) soils or due to high soil-to-root resistance. The ability of deep roots and soils to contribute increasing amounts of water with extended drought will be limited.

Impact of soil water regime on degradation and plant uptake behaviour of the herbicide isoproturon in different soil types.

PubMed

Grundmann, Sabine; Doerfler, Ulrike; Munch, Jean Charles; Ruth, Bernhard; Schroll, Reiner

2011-03-01

The environmental fate of the worldwide used herbicide isoproturon was studied in four different, undisturbed lysimeters in the temperate zone of Middle Europe. To exclude climatic effects due to location, soils were collected at different regions in southern Germany and analyzed at a lysimeter station under identical environmental conditions. (14)C-isoproturon mineralization varied between 2.59% and 57.95% in the different soils. Barley plants grown on these lysimeters accumulated (14)C-pesticide residues from soil in partially high amounts and emitted (14)CO(2) in an extent between 2.01% and 13.65% of the applied (14)C-pesticide. Plant uptake and (14)CO(2) emissions from plants were inversely linked to the mineralization of the pesticide in the various soils: High isoproturon mineralization in soil resulted in low plant uptake whereas low isoproturon mineralization in soil resulted in high uptake of isoproturon residues in crop plants and high (14)CO(2) emission from plant surfaces. The soil water regime was identified as an essential factor that regulates degradation and plant uptake of isoproturon whereby the intensity of the impact of this factor is strongly dependent on the soil type. Copyright © 2010 Elsevier Ltd. All rights reserved.

Effect of soil moisture on the sorption of trichloroethene vapor to vadose-zone soil at picatinny arsenal, New Jersey

USGS Publications Warehouse

Smith, J.A.; Chiou, C.T.; Kammer, J.A.; Kile, D.E.

1990-01-01

This report presents data on the sorption of trichloroethene (TCE) vapor to vadose-zone soil above a contaminated water-table aquifer at Picatinny Arsenal in Morris County, NJ. To assess the impact of moisture on TCE sorption, batch experiments on the sorption of TCE vapor by the field soil were carried out as a function of relative humidity. The TCE sorption decreases as soil moisture content increases from zero to saturation soil moisture content (the soil moisture content in equilibrium with 100% relative humidity). The moisture content of soil samples collected from the vadose zone was found to be greater than the saturation soil-moisture content, suggesting that adsorption of TCE by the mineral fraction of the vadose-zone soil should be minimal relative to the partition uptake by soil organic matter. Analyses of soil and soil-gas samples collected from the field indicate that the ratio of the concentration of TCE on the vadose-zone soil to its concentration in the soil gas is 1-3 orders of magnitude greater than the ratio predicted by using an assumption of equilibrium conditions. This apparent disequilibrium presumably results from the slow desorption of TCE from the organic matter of the vadose-zone soil relative to the dissipation of TCE vapor from the soil gas.

Soil thresholds and a decision tool to manage food safety of crops grown in chlordecone polluted soil in the French West Indies.

PubMed

Clostre, Florence; Letourmy, Philippe; Lesueur-Jannoyer, Magalie

2017-04-01

Due to the persistent pollution of soils by an organochlorine, chlordecone (CLD also known as Kepone © ) in the French West Indies, some crops may be contaminated beyond the European regulatory threshold, the maximum residue limit (MRL). Farmers need to be able to foresee the risk of not complying with the regulatory threshold in each field and for each crop, if not, farmers whose fields are contaminated would have to stop cultivating certain crops in the fields concerned. To help farmers make the right choices, we studied the relationship between contamination of the soil and contamination of crops. We showed that contamination of a crop by CLD depended on the crop concerned, the soil CLD content and the type of soil. We grouped crop products in three categories: (i) non-uptakers and low-uptakers, (ii) medium-uptakers, and (iii) high-uptakers, according to their level of contamination and the resulting risk of exceeding MRL. Using a simulation model, we computed the soil threshold required to ensure the risk of not complying with MRL was sufficiently low for each crop product and soil type. Threshold values ranged from 0.02 μgkg -1 for dasheen grown in nitisol to 1.7 μgkg -1 for yam grown in andosol in the high-uptake category, and from 1 μgkg -1 for lettuce grown in nitisol to 45 μgkg -1 for the leaves of spring onions grown in andosol in the medium-uptake category. Contamination of non-uptakers and low-uptakers did not depend on soil contamination. With these results, we built an easy-to-use decision support tool based on two soil thresholds (0.1 and 1 μgkg -1 ) to enable growers to adapt their cropping system and hence to be able to continue farming. Copyright © 2017 Elsevier Ltd. All rights reserved.

Namib Desert primary productivity is driven by cryptic microbial community N-fixation.

PubMed

Ramond, Jean-Baptiste; Woodborne, Stephan; Hall, Grant; Seely, Mary; Cowan, Don A

2018-05-02

Carbon exchange in drylands is typically low, but during significant rainfall events (wet anomalies) drylands act as a C sink. During these anomalies the limitation on C uptake switches from water to nitrogen. In the Namib Desert of southern Africa, the N inventory in soil organic matter available for mineralisation is insufficient to support the observed increase in primary productivity. The C4 grasses that flourish after rainfall events are not capable of N fixation, and so there is no clear mechanism for adequate N fixation in dryland ecosystems to support rapid C uptake. Here we demonstrate that N fixation by photoautotrophic hypolithic communities forms the basis for the N budget for plant productivity events in the Namib Desert. Stable N isotope (δ 15 N) values of Namib Desert hypolithic biomass, and surface and subsurface soils were measured over 3 years across dune and gravel plain biotopes. Hypoliths showed significantly higher biomass and lower δ 15 N values than soil organic matter. The δ 15 N values of hypoliths approach the theoretical values for nitrogen fixation. Our results are strongly indicative that hypolithic communities are the foundation of productivity after rain events in the Namib Desert and are likely to play similar roles in other arid environments.

Converging patterns of uptake and hydraulic redistribution of soil water in contrasting woody vegetation types.

Treesearch

F.C. Meinzer; J.R. Brooks; S. Bucci; G. Goldstein; F.G. Scholz; J.M. Arren

2004-01-01

We used concurrent measurements of soil water content and soil water potential (Ψsoil) to assess the effects of Ψsoil on uptake and hydraulic redistribution (HR) of soil water by roots during seasonal drought cycles at six sites characterized by differences in the types and amounts of woody vegetations and...

Effect of arbuscular mycorrhizal (AM) fungi on 137Cs uptake by plants grown on different soils.

PubMed

Vinichuk, M; Mårtensson, A; Ericsson, T; Rosén, K

2013-01-01

The potential use of mycorrhiza as a bioremediation agent for soils contaminated by radiocesium was evaluated in a greenhouse experiment. The uptake of (137)Cs by cucumber, perennial ryegrass, and sunflower after inoculation with a commercial arbuscular mycorrhizal (AM) product in soils contaminated with (137)Cs was investigated, with non-mycorrhizal quinoa included as a "reference" plant. The effect of cucumber and ryegrass inoculation with AM fungi on (137)Cs uptake was inconsistent. The effect of AM fungi was most pronounced in sunflower: both plant biomass and (137)Cs uptake increased on loamy sand and loamy soils. The total (137)Cs activity accumulated within AM host sunflower on loamy sand and loamy soils was 2.4 and 3.2-fold higher than in non-inoculated plants. Although the enhanced uptake of (137)Cs by quinoa plants on loamy soil inoculated by the AM fungi was observed, the infection of the fungi to the plants was not confirmed. Copyright © 2012 Elsevier Ltd. All rights reserved.

Mapping the metal uptake in plants from Jasper Ridge Biological Preserve using synchrotron micro-focused X-ray fluorescence spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lo, Allison

2015-08-20

Serpentine soil originates in the Earth’s mantle and contains high concentrations of potentially toxic transition metals. Although serpentine soil limits plant growth, endemic and adapted plants at Jasper Ridge Biological Preserve, located behind SLAC National Accelerator Laboratory, can tolerate these conditions. Serpentine soil and seeds belonging to native California and invasive plants were collected at Jasper Ridge. The seeds were grown hydroponically and on serpentine and potting soil to examine the uptake and distribution of ions in the roots and shoots using synchrotron micro-focused X-ray fluorescence spectroscopy. The results were used to determine differences between serpentine-tolerant plants. Rye grown onmore » potting soil was enriched in Ni, Fe, Mn, and Cr compared to purple needlegrass grown on serpentine soil. Serpentine vegetation equally suppressed the uptake of Mn, Ni, and Fe in the roots and shoots. The uptake of Ca and Mg affected the uptake of other elements such as K, S, and P.« less

Mapping the Metal Uptake in Plants from Jasper Ridge Biological Preserve - Oral Presentation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lo, Allison

2015-08-24

Serpentine soil originates in the Earth’s mantle and contains high concentrations of potentially toxic transition metals. Although serpentine soil limits plant growth, endemic and adapted plants at Jasper Ridge Biological Preserve, located behind SLAC National Accelerator Laboratory, can tolerate these conditions. Serpentine soil and seeds belonging to native California and invasive plants were collected at Jasper Ridge. The seeds were grown hydroponically and on serpentine and potting soil to examine the uptake and distribution of ions in the roots and shoots using synchrotron micro-focused X-ray fluorescence spectroscopy. The results were used to determine differences between serpentinetolerant plants. Rye grown onmore » potting soil was enriched in Ni, Fe, Mn, and Cr compared to purple needlegrass grown on serpentine soil. Serpentine vegetation equally suppressed the uptake of Mn, Ni, and Fe in the roots and shoots. The uptake of Ca and Mg affected the uptake of other elements such as K, S, and P.« less

Transformation of soil organic matter in leached chernozems under minimized treatment in the forest-steppe of West Siberia

NASA Astrophysics Data System (ADS)

Sharkov, I. N.; Samokhvalova, L. M.; Mishina, P. V.

2016-07-01

Changes in the contents of total organic carbon and the carbon of easily mineralizable fractions of organic matter (labile humus, detritus, and mortmass) in the layers of 0-10, 10-25, and 0-25 cm were studied in leached chernozems ((Luvic Chernozems (Loamic, Aric)) subjected to deep plowing and surface tillage for nine years. In the layer of 0-25 cm, the content of Corg did not show significant difference between these two treatments and comprised 3.68-3.92% in the case of deep plowing and 3.63-4.08% in the case of surface tillage. Tillage practices greatly affected the distribution of easily mineralizable fractions of organic matter in the layers of 0-10 and 10-25 cm, though the difference between two treatments for the entire layer (0-25 cm) was insignificant. Surface tillage resulted in the increase in the contents of mortmass (by 59%), detritus (by 32%), and labile humus (by 8%) in the layer of 0-10 cm in comparison with deep plowing. At the same time, the contents of these fractions in the layer of 10-25 cm in the surface tillage treatment decreased by 67, 46, and 3%, respectively. The estimate of the nitrogen-mineralizing capacity made according to the data on the uptake of soil nitrogen by oat plants in a special greenhouse experiment confirmed the observed regularities of the redistribution of easily mineralizable organic matter fractions by the soil layers. In case of surface tillage, it increased by 23% in the layer of 0-10 cm; for the layer of 0-25 cm, no significant differences in the uptake of nitrogen by oat plants were found for the two studied treatments.

Defoliating Insect Mass Outbreak Affects Soil N Fluxes and Tree N Nutrition in Scots Pine Forests

PubMed Central

Grüning, Maren M.; Simon, Judy; Rennenberg, Heinz; l-M-Arnold, Anne

2017-01-01

Biotic stress by mass outbreaks of defoliating pest insects does not only affect tree performance by reducing its photosynthetic capacity, but also changes N cycling in the soil of forest ecosystems. However, how insect induced defoliation affects soil N fluxes and, in turn, tree N nutrition is not well-studied. In the present study, we quantified N input and output fluxes via dry matter input, throughfall, and soil leachates. Furthermore, we investigated the effects of mass insect herbivory on tree N acquisition (i.e., organic and inorganic 15N net uptake capacity of fine roots) as well as N pools in fine roots and needles in a Scots pine (Pinus sylvestris L.) forest over an entire vegetation period. Plots were either infested by the nun moth (Lymantria monacha L.) or served as controls. Our results show an increased N input by insect feces, litter, and throughfall at the infested plots compared to controls, as well as increased leaching of nitrate. However, the additional N input into the soil did not increase, but reduce inorganic and organic net N uptake capacity of Scots pine roots. N pools in the fine roots and needles of infested trees showed an accumulation of total N, amino acid-N, protein-N, and structural N in the roots and the remaining needles as a compensatory response triggered by defoliation. Thus, although soil N availability was increased via surplus N input, trees did not respond with an increased N acquisition, but rather invested resources into defense by accumulation of amino acid-N and protein-N as a survival strategy. PMID:28638396

From which soil metal fractions Fe, Mn, Zn and Cu are taken up by olive trees (Olea europaea L., cv. 'Chondrolia Chalkidikis') in organic groves?

PubMed

Chatzistathis, T; Papaioannou, A; Gasparatos, D; Molassiotis, A

2017-12-01

Organic farming has been proposed as an alternative agricultural system to help solve environmental problems, like the sustainable management of soil micronutrients, without inputs of chemical fertilizers. The purposes of this study were: i) to assess Fe, Mn, Zn and Cu bioavailability through the determination of sequentially extracted chemical forms (fractions) and their correlation with foliar micronutrient concentrations in mature organic olive (cv. 'Chondrolia Chalkidikis') groves; ii) to determine the soil depth and the available forms (fractions) by which the 4 metals are taken up by olive trees. DTPA extractable (from the soil layers 0-20, 20-40 and 40-60 cm) and foliar micronutrient concentrations were determined in two organic olive groves. Using the Tessier fractionation, five fractions, for all the metals, were found: exchangeable, bound to carbonates (acid-soluble), bound to Fe-Mn oxides (reducible), organic (oxidizable), as well as residual form. Our results indicated that Fe was taken up by the olive trees as organic complex, mainly from the soil layer 40-60 cm. Manganese was taken up from the exchangeable fraction (0-20 cm); Zinc was taken up as organic complex from the layers 0-20 and 40-60 cm, as well as in the exchangeable form from the upper 20 cm. Copper was taken up from the soil layers 0-20 and 40-60 cm as soluble organic complex, and as exchangeable ion from the upper 20 cm. Our data reveal the crucial role of organic matter to sustain metal (Fe, Zn and Cu) uptake -as soluble complexes-by olive trees, in mature organic groves grown on calcareous soils; it is also expected that these data will constitute a thorough insight and useful tool towards a successful nutrient and organic C management for organic olive groves, since no serious nutritional deficiencies were found. Copyright © 2017 Elsevier Ltd. All rights reserved.

Nutrient uptake and growth responses of Virginia pine to elevated atmospheric carbon dioxide. [Pisolithus tinctorius, Pinus virginiana Mill

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luxmoore, R.J.; O'Neill, E.G.; Ells, J.M.

One-year-old Virgina pine (Pinus virginiana Mill.) seedlings with native or Pisolithus tinctorius mycorrhizal associations were grown in pots with soil low in organic matter and in cation exchange capacity and were exposed to one of five atmospheric CO/sub 2/ levels in the range of 340 to 940 ..mu..L/L in open-top field chambers. The mean dry weight of the seedlings increased from 4.4 to 11.0 g/plant during the 122-d exposure period. Significant increases in dry weight and uptake of N, Ca, Al, Fe, Zn, and Sr occurred with CO/sub 2/ enrichment. Greater chemical uptake was associated with greater root weight. Specificmore » absorption rates for chemicals (uptake per gram of root per day) were generally not affected by CO/sub 2/ enrichment. The uptake of P and K was not increased with elevated CO/sub 2/, and these elements showed the greater nutrient-use efficiency (C gain per element uptake). The nutrient-use efficiency for N and Ca was not influenced by atmospheric CO/sub 2/ enrichment. Large increases in Zn uptake at high CO'' suggested an increase in rhizosphere acidification, which may have resulted from the release of protons from the roots, since it was estimated that cation uptake increasingly exceeded anion uptake with CO/sub 2/ enrichment. Potassium, P, and NO/sub 3//sup -/ concentrations in the pot leachate decreased with higher CO/sub 2/ levels, and a similar trend was found for Al and Mg. These results suggest that soil-plant systems may exhibit increased nutrient and chemical retention at elevated atmospheric CO/sub 2/.« less

Unexpected stimulation of soil methane uptake as emergent property of agricultural soils following bio-based residue application.

PubMed

Ho, Adrian; Reim, Andreas; Kim, Sang Yoon; Meima-Franke, Marion; Termorshuizen, Aad; de Boer, Wietse; van der Putten, Wim H; Bodelier, Paul L E

2015-10-01

Intensification of agriculture to meet the global food, feed, and bioenergy demand entail increasing re-investment of carbon compounds (residues) into agro-systems to prevent decline of soil quality and fertility. However, agricultural intensification decreases soil methane uptake, reducing, and even causing the loss of the methane sink function. In contrast to wetland agricultural soils (rice paddies), the methanotrophic potential in well-aerated agricultural soils have received little attention, presumably due to the anticipated low or negligible methane uptake capacity in these soils. Consequently, a detailed study verifying or refuting this assumption is still lacking. Exemplifying a typical agricultural practice, we determined the impact of bio-based residue application on soil methane flux, and determined the methanotrophic potential, including a qualitative (diagnostic microarray) and quantitative (group-specific qPCR assays) analysis of the methanotrophic community after residue amendments over 2 months. Unexpectedly, after amendments with specific residues, we detected a significant transient stimulation of methane uptake confirmed by both the methane flux measurements and methane oxidation assay. This stimulation was apparently a result of induced cell-specific activity, rather than growth of the methanotroph population. Although transient, the heightened methane uptake offsets up to 16% of total gaseous CO2 emitted during the incubation. The methanotrophic community, predominantly comprised of Methylosinus may facilitate methane oxidation in the agricultural soils. While agricultural soils are generally regarded as a net methane source or a relatively weak methane sink, our results show that methane oxidation rate can be stimulated, leading to higher soil methane uptake. Hence, even if agriculture exerts an adverse impact on soil methane uptake, implementing carefully designed management strategies (e.g. repeated application of specific residues) may compensate for the loss of the methane sink function following land-use change. © 2015 John Wiley & Sons Ltd.

Soluble soil aluminum alters the relative uptake of mineral nitrogen forms by six mature temperate broadleaf tree species: possible implications for watershed nitrate retention.

PubMed

Burnham, Mark B; Cumming, Jonathan R; Adams, Mary Beth; Peterjohn, William T

2017-11-01

Increased availability of monomeric aluminum (Al 3+ ) in forest soils is an important adverse effect of acidic deposition that reduces root growth and inhibits nutrient uptake. There is evidence that Al 3+ exposure interferes with NO 3 - uptake. If true for overstory trees, the reduction in stand demand for NO 3 - could increase NO 3 - discharge in stream water. These effects may also differ between species that tolerate different levels of soil acidity. To examine these ideas, we measured changes in relative uptake of NO 3 - and NH 4 + by six tree species in situ under increased soil Al 3+ using a 15 N-labeling technique, and measured soluble soil Al levels in a separate whole-watershed acidification experiment in the Fernow Experimental Forest (WV). When exposed to added Al 3+ , the proportion of inorganic N acquired as NO 3 - dropped 14% across species, but we did not detect a reduction in overall N uptake, nor did tree species differ in this response. In the long-term acidification experiment, we found that soluble soil Al was mostly in the free Al 3+ form, and the concentration of Al 3+ was ~65 μM higher (~250%) in the mineral soil of the acidified watershed vs. an untreated watershed. Thus, increased levels of soil Al 3+ under acidic deposition cause a reduction in uptake of NO 3 - by mature trees. When our 15 N uptake results were applied to the watershed acidification experiment, they suggest that increased Al 3+ exposure could reduce tree uptake of NO 3 - by 7.73 kg N ha -1  year -1 , and thus increase watershed NO 3 - discharge.

Input related microbial carbon dynamic of soil organic matter in particle size fractions

NASA Astrophysics Data System (ADS)

Gude, A.; Kandeler, E.; Gleixner, G.

2012-04-01

This paper investigated the flow of carbon into different groups of soil microorganisms isolated from different particle size fractions. Two agricultural sites of contrasting organic matter input were compared. Both soils had been submitted to vegetation change from C3 (Rye/Wheat) to C4 (Maize) plants, 25 and 45 years ago. Soil carbon was separated into one fast-degrading particulate organic matter fraction (POM) and one slow-degrading organo-mineral fraction (OMF). The structure of the soil microbial community were investigated using phospholipid fatty acids (PLFA), and turnover of single PLFAs was calculated from the changes in their 13C content. Soil enzyme activities involved in the degradation of carbohydrates was determined using fluorogenic MUF (methyl-umbelliferryl phosphate) substrates. We found that fresh organic matter input drives soil organic matter dynamic. Higher annual input of fresh organic matter resulted in a higher amount of fungal biomass in the POM-fraction and shorter mean residence times. Fungal activity therefore seems essential for the decomposition and incorporation of organic matter input into the soil. As a consequence, limited litter input changed especially the fungal community favouring arbuscular mycorrhizal fungi. Altogether, supply and availability of fresh plant carbon changed the distribution of microbial biomass, the microbial community structure and enzyme activities and resulted in different priming of soil organic matter. Most interestingly we found that only at low input the OMF fraction had significantly higher calculated MRT for Gram-positive and Gram-negative bacteria suggesting high recycling of soil carbon or the use of other carbon sources. But on average all microbial groups had nearly similar carbon uptake rates in all fractions and both soils, which contrasted the turnover times of bulk carbon. Hereby the microbial carbon turnover was always faster than the soil organic carbon turnover and higher carbon input reduced the carbon storage efficiency from 51 % in the low input to 20 %. These findings suggest that microbial community preferentially assimilated fresh carbon sources but also used recycled existing soil carbon. However, the priming rate was drastically reduced under carbon limitation. In consequence at high carbon availability more carbon was respired to activate the existing soil carbon (priming) whereas at low carbon availability new soil carbon was formed at higher efficiencies.

The Impact of pH and Calcium on the Uptake of Fluoride by Tea Plants (Camellia sinensis L.)

PubMed Central

RUAN, JIANYUN; MA, LIFENG; SHI, YUANZHI; HAN, WENYAN

2004-01-01

• Background and Aims Tea plants (Camellia sinensis L.) accumulate large amounts of fluoride (F) from soils containing normal F concentrations. The present experiments examined the effects of pH and Ca on F uptake by this accumulating plant species. • Methods The effect of pH was assessed in two experiments, one using uptake solutions with different pHs, and the other using lime, as CaO, applied to the soil. The effect of Ca was examined by analysing F concentrations in plants supplied with varying amounts of Ca, as Ca(NO3)2, either in uptake solutions or through the soil. • Key results F uptake was highest at solution pH 5·5, and significantly lower at pH 4·0. In the soil experiment, leaf F decreased linearly with the amounts of lime, which raised the soil pH progressively from 4·32 to 4·91, 5·43, 5·89 and, finally, 6·55. Liming increased the water‐soluble F content of the soil. Including Ca in the uptake solution or adding Ca to soil significantly decreased leaf F concentrations. The distribution pattern of F in tea plants was not altered by Ca treatment, with most F being allocated to leaves. The activity of F– in the uptake solution was unaffected and water‐soluble F in the soil was sometimes increased by added Ca. • Conclusions F uptake by tea plants, which are inherently able to accumulate large quantities of F, was affected both by pH and by Ca levels in the medium. The reduced F uptake following Ca application appeared not to be due simply to the precipitation of CaF2 in solution and soil or to the complexing of Ca and F in roots, although these factors cannot be dismissed. It was more likely due to the effect of Ca on the properties of cell wall or membrane permeability in the solution experiments, and to alteration of F speciations and their quantities in soil solutions following Ca application. PMID:14644914

Uptake of metals during chelant-assisted phytoextraction with EDDS related to the solubilized metal concentration.

PubMed

Tandy, Susan; Schulin, Rainer; Nowack, Bernd

2006-04-15

The use of chelants to enhance phytoextraction is one method being tested to make phytoextraction efficient enough to be used as a remediation technique for heavy metal pollution in the field. We performed pot experiments with sunflowers in order to investigate the use of the biodegradable chelating agent SS-EDDS for this purpose. We used singly and combined contaminated soils (Cu, Zn) and multimetal contaminated field soils (Cu, Zn, Cd, Pb). EDDS (10 mmol kg(-10 soil) increased soil solution metals greatly for Cu (factor 840-4260) and Pb (factor 100-315), and to a lesser extent for Zn (factor 23-50). It was found that Zn (when present as the sole metal), Cu, and Pb uptake by sunflowers was increased by EDDS, butin multimetal contaminated soil Zn and Cd were not. EDDS was observed in the sunflower roots and shoots at concentrations equal to metal uptake. The different metal uptake in the various soils can be related to a linear relationship between Cu and Zn in soil solution in the presence of EDDS and plant uptake, indicating the great importance of measuring and reporting soil solution metal concentrations in phytoextraction studies.

Temporal variability in trace metal solubility in a paddy soil not reflected in uptake by rice (Oryza sativa L.).

PubMed

Pan, Yunyu; Koopmans, Gerwin F; Bonten, Luc T C; Song, Jing; Luo, Yongming; Temminghoff, Erwin J M; Comans, Rob N J

2016-12-01

Alternating flooding and drainage conditions have a strong influence on redox chemistry and the solubility of trace metals in paddy soils. However, current knowledge of how the effects of water management on trace metal solubility are linked to trace metal uptake by rice plants over time is still limited. Here, a field-contaminated paddy soil was subjected to two flooding and drainage cycles in a pot experiment with two rice plant cultivars, exhibiting either high or low Cd accumulation characteristics. Flooding led to a strong vertical gradient in the redox potential (Eh). The pH and Mn, Fe, and dissolved organic carbon concentrations increased with decreasing Eh and vice versa. During flooding, trace metal solubility decreased markedly, probably due to sulfide mineral precipitation. Despite its low solubility, the Cd content in rice grains exceeded the food quality standards for both cultivars. Trace metal contents in different rice plant tissues (roots, stem, and leaves) increased at a constant rate during the first flooding and drainage cycle but decreased after reaching a maximum during the second cycle. As such, the high temporal variability in trace metal solubility was not reflected in trace metal uptake by rice plants over time. This might be due to the presence of aerobic conditions and a consequent higher trace metal solubility near the root surface, even during flooding. Trace metal solubility in the rhizosphere should be considered when linking water management to trace metal uptake by rice over time.

Forest Soil Phosphorus Resources and Fertilization Affect Ectomycorrhizal Community Composition, Beech P Uptake Efficiency, and Photosynthesis

PubMed Central

Zavišić, Aljosa; Yang, Nan; Marhan, Sven; Kandeler, Ellen; Polle, Andrea

2018-01-01

Phosphorus (P) is an important nutrient, whose plant-available form phosphate is often low in natural forest ecosystems. Mycorrhizal fungi mine the soil for P and supply their host with this resource. It is unknown how ectomycorrhizal communities respond to changes in P availability. Here, we used young beech (Fagus sylvatica L.) trees in natural forest soil from a P-rich and P-poor site to investigate the impact of P amendment on soil microbes, mycorrhizas, beech P nutrition, and photosynthesis. We hypothesized that addition of P to forest soil increased P availability, thereby, leading to enhanced microbial biomass and mycorrhizal diversity in P-poor but not in P-rich soil. We expected that P amendment resulted in increased plant P uptake and enhanced photosynthesis in both soil types. Young beech trees with intact soil cores from a P-rich and a P-poor forest were kept in a common garden experiment and supplied once in fall with triple superphosphate. In the following summer, labile P in the organic layer, but not in the mineral top soil, was significantly increased in response to fertilizer treatment. P-rich soil contained higher microbial biomass than P-poor soil. P treatment had no effect on microbial biomass but influenced the mycorrhizal communities in P-poor soil and shifted their composition toward higher similarities to those in P-rich soil. Plant uptake efficiency was negatively correlated with the diversity of mycorrhizal communities and highest for trees in P-poor soil and lowest for fertilized trees. In both soil types, radioactive P tracing (H333PO4) revealed preferential aboveground allocation of new P in fertilized trees, resulting in increased bound P in xylem tissue and enhanced soluble P in bark, indicating increased storage and transport. Fertilized beeches from P-poor soil showed a strong increase in leaf P concentrations from deficient to luxurious conditions along with increased photosynthesis. Based on the divergent behavior of beech in P-poor and P-rich forest soil, we conclude that acclimation of beech to low P stocks involves dedicated mycorrhizal community structures, low P reserves in storage tissues and photosynthetic inhibition, while storage and aboveground allocation of additional P occurs regardless of the P nutritional status. PMID:29706979

Spatial variations in larch needle and soil δ15N at a forest-grassland boundary in northern Mongolia.

PubMed

Fujiyoshi, Lei; Sugimoto, Atsuko; Tsukuura, Akemi; Kitayama, Asami; Lopez Caceres, M Larry; Mijidsuren, Byambasuren; Saraadanbazar, Ariunaa; Tsujimura, Maki

2017-03-01

The spatial patterns of plant and soil δ 15 N and associated processes in the N cycle were investigated at a forest-grassland boundary in northern Mongolia. Needles of Larix sibirica Ledeb. and soils collected from two study areas were analysed to calculate the differences in δ 15 N between needle and soil (Δδ 15 N). Δδ 15 N showed a clear variation, ranging from -8 ‰ in the forest to -2 ‰ in the grassland boundary, and corresponded to the accumulation of organic layer. In the forest, the separation of available N produced in the soil with 15 N-depleted N uptake by larch and 15 N-enriched N immobilization by microorganisms was proposed to cause large Δδ 15 N, whereas in the grassland boundary, small Δδ 15 N was explained by the transport of the most available N into larch. The divergence of available N between larch and microorganisms in the soil, and the accumulation of diverged N in the organic layer control the variation in Δδ 15 N.

Phytotreatment of soil contaminated with used lubricating oil using Hibiscus cannabinus.

PubMed

Abioye, O P; Agamuthu, P; Abdul Aziz, A R

2012-04-01

Soil contamination by hydrocarbons, especially by used lubricating oil, is a growing problem in developing countries, which poses a serious threat to the environment. Phytoremediation of these contaminated soils offers environmental friendly and a cost effective method for their remediation. Hibiscus cannabinus was studied for the remediation of soil contaminated with 2.5 and 1% used lubricating oil and treated with organic wastes [banana skin (BS), brewery spent grain (BSG) and spent mushroom compost (SMC)] for a period of 90 days under natural conditions. Loss of 86.4 and 91.8% used lubricating oil was recorded in soil contaminated with 2.5 and 1% oil and treated with organic wastes respectively at the end of 90 days. However, 52.5 and 58.9% oil loss was recorded in unamended soil contaminated with 2.5 and 1% oil, respectively. The plant did not accumulate hydrocarbon from the soil but shows appreciable accumulation of Fe and Zn in the root and stem of H. cannabinus at the end of the experiment. The first order kinetic rate of uptake of Fe and Zn in H. cannabinus was higher in organic wastes amendment treatments compared to the unamended treatments, which are extremely low. The results of this study suggest that H. cannabinus has a high potential for remediation of hydrocarbon and heavy metal contaminated soil.

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil.

PubMed

Lehtovirta-Morley, Laura E; Stoecker, Kilian; Vilcinskas, Andreas; Prosser, James I; Nicol, Graeme W

2011-09-20

Nitrification is a fundamental component of the global nitrogen cycle and leads to significant fertilizer loss and atmospheric and groundwater pollution. Nitrification rates in acidic soils (pH < 5.5), which comprise 30% of the world's soils, equal or exceed those of neutral soils. Paradoxically, autotrophic ammonia oxidizing bacteria and archaea, which perform the first stage in nitrification, demonstrate little or no growth in suspended liquid culture below pH 6.5, at which ammonia availability is reduced by ionization. Here we report the discovery and cultivation of a chemolithotrophic, obligately acidophilic thaumarchaeal ammonia oxidizer, "Candidatus Nitrosotalea devanaterra," from an acidic agricultural soil. Phylogenetic analysis places the organism within a previously uncultivated thaumarchaeal lineage that has been observed in acidic soils. Growth of the organism is optimal in the pH range 4 to 5 and is restricted to the pH range 4 to 5.5, unlike all previously cultivated ammonia oxidizers. Growth of this organism and associated ammonia oxidation and autotrophy also occur during nitrification in soil at pH 4.5. The discovery of Nitrosotalea devanaterra provides a previously unsuspected explanation for high rates of nitrification in acidic soils, and confirms the vital role that thaumarchaea play in terrestrial nitrogen cycling. Growth at extremely low ammonia concentration (0.18 nM) also challenges accepted views on ammonia uptake and metabolism and indicates novel mechanisms for ammonia oxidation at low pH.

Controls on soil solution nitrogen along an altitudinal gradient in the Scottish uplands

NASA Astrophysics Data System (ADS)

Jackson-Blake, L.; Helliwell, R. C.; Britton, A. J.; Gibbs, S.; Coull, M. C.; Dawson, L.

2012-04-01

Nitrogen (N) deposition continues to threaten upland ecosystems, contributing to acidification, eutrophication and biodiversity loss. We present results from a monitoring study aimed at investigating the fate of this deposited N within a relatively pristine catchment in the Cairngorm Mountains (Scotland). Six sites were established along an elevation gradient (486 - 908 m) spanning the key habitats of temperate maritime uplands. Bulk deposition chemistry, soil carbon content, soil solution chemistry, soil temperature and soil moisture content were monitored over a 5 year period, making this the first study of its kind in a maritime Alpine environment. Results were used to assess spatial variability in soil solution N and to investigate the factors and processes driving this variability. Highest soil solution inorganic N concentrations were found in the alpine soils at the top of the hillslope. Soil carbon stock, dissolved organic carbon concentration and factors representing site hydrology were the best predictors of nitrate concentration. These factors act as proxies for changing net biological uptake and soil/water contact time, and support the hypothesis that spatial variations in soil solution nitrate are controlled by habitat N retention capacity. Soil percent carbon was a better predictor of soil solution N concentration than mass of carbon. Ammonium was less affected by soil hydrology than nitrate and showed the effects of net mineralization inputs, particularly at Racomitrium heath and peaty sites. We hypothesize that high ammonium concentrations at the Racomitrium heath are related to the mineralization of microbial cell tissue during times of stress, largely in the absence of plant uptake. Due to the spatial heterogeneity in N leaching potential, a fine-scale approach to assessing surface water vulnerability to N leaching is recommended over the broad scale, critical loads approach currently in use, particularly for sensitive areas.

Experimental soil warming and cooling alters the partitioning of recent assimilates: evidence from a (14)C-labelling study at the alpine treeline.

PubMed

Ferrari, A; Hagedorn, F; Niklaus, P A

2016-05-01

Despite concerns about climate change effects on ecosystems functioning, little is known on how plant assimilate partitioning changes with temperature. Particularly, large temperature effects might occur in cold ecosystems where critical processes are at their temperature limit. In this study, we tested temperature effects on carbon (C) assimilate partitioning in a field experiment at the alpine treeline. We warmed and cooled soils of microcosms planted with Pinus mugo or Leucanthemopsis alpina, achieving daily mean soil temperatures (3-10 cm depth) around 5.8, 12.7 and 19.2 °C in cooled, control and warmed soils. We pulse-labelled these systems with (14)CO2 for one photoperiod and traced (14)C over the successive 4 days. Plant net (14)C uptake increased steadily with soil temperature. However, (14)C amounts in fungal hyphae, soil microbial biomass, soil organic matter, and soil respiration showed a non-linear response to temperature. This non-linear pattern was particularly pronounced in P. mugo, with five times higher (14)C activities in cooled compared to control soils, but no difference between warmed and control soil. Autoradiographic analysis of the spatial distribution of (14)C in soils indicated that temperature effects on the vertical label distribution within soils depended on plant species. Our results show that plant growth, in particular root metabolism, is limited by low soil temperature. As a consequence, positive temperature effects on net C uptake may not be paralleled by similar changes in rhizodeposition. This has important implications for predictions of soil C storage, because rhizodeposits and plant biomass vary strongly in their residence times.

Effect of soil type and exposure duration on mortality and transfer of chlorantraniliprole and fipronil on Formosan subterranean termites (Isoptera: Rhinotermitidae).

PubMed

Gautam, Bal K; Henderson, Gregg

2011-12-01

The uptake and potential transfer of chlorantraniliprole and fipronil by the Formosan subterranean termite, Coptotermes formosanus Shiraki, was investigated in the laboratory by using donor-recipient model bioassays. Two different types of substrates, sandy loam soil (18.6% organic matter) and sand (0.19% organic matter), were used to evaluate how these treated substrates impact the direct mortality and transfer efficiency of the two nonrepellent termiticides tested at different concentrations. Chlorantraniliprole exhibited a more delayed mortality on termites than fipronil in sand. In soil, chlorantraniliprole did not cause higher mortality to either donor or recipient termite at any of the tested concentrations during a 21-d test period when compared with controls. Compared with the controls, a greater number of donors died in the soil treated with fipronil at 14 h postinteraction, and higher death of recipients occurred at 21 d but only in the 60-ppm concentration tested. Our data showed that chlorantraniliprole performed best in substrate with low organic matter against

Potential Application of Biohydrogen Production Liquid Waste as Phosphate Solubilizing Agent-A Study Using Soybean Plants.

PubMed

Sarma, Saurabh Jyoti; Brar, Satinder Kaur; LeBihan, Yann; Buelna, Gerardo

2016-03-01

With CO2 free emission and a gravimetric energy density higher than gasoline, diesel, biodiesel, and bioethanol, biohydrogen is a promising green renewable energy carrier. During fermentative hydrogen production, 60-70 % of the feedstock is converted to different by-products, dominated by organic acids. In the present investigation, a simple approach for value addition of hydrogen production liquid waste (HPLW) containing these compounds has been demonstrated. In soil, organic acids produced by phosphate solubilizing bacteria chelate the cations of insoluble inorganic phosphates (e.g., Ca3 (PO4)2) and make the phosphorus available to the plants. Organic acid-rich HPLW, therefore, has been evaluated as soil phosphate solubilizer. Application of HPLW as soil phosphate solubilizer was found to improve the phosphorus uptake of soybean plants by 2.18- to 2.74-folds. Additionally, 33-100 % increase in seed germination rate was also observed. Therefore, HPLW has the potential to be an alternative for phosphate solubilizing biofertilizers available in the market. Moreover, the strategy can be useful for phytoremediation of phosphorus-rich soil.

Advancing the use of minirhizotrons in wetlands

Treesearch

C. M. Iversen; M. T. Murphy; M. F. Allen; J. Childs; D. M. Eissenstat; E.A. Lilleskov; T. M. Sarjala; V. L. Sloan; P. F. Sullivan

2012-01-01

Background. Wetlands store a substantial amount of carbon (C) in deep soil organic matter deposits, and play an important role in global fluxes of carbon dioxide and methane. Fine roots (i.e., ephemeral roots that are active in water and nutrient uptake) are recognized as important components of biogeochemical cycles in nutrient-limited wetland ecosystems. However,...

Long-term Tillage and Cropping Sequence Effect on Dryland Crop Yields and Carbon and Nitrogen Cycling

USDA-ARS?s Scientific Manuscript database

Improved management practices are needed to increase dryland crop yields and soil organic matter compared with conventional farming practices in the northern Great Plains. We evaluated the 21-yr effect of tillage and cropping sequence on dryland grain and biomass (stems + leaves) yields and N uptake...

Comparative uptake of plutonium from soils by Brassica juncea and Helianthus annuus.

PubMed

Lee, J H; Hossner, L R; Attrep, M; Kung, K S

2002-01-01

Plutonium uptake by Brassica juncea (Indian mustard) and Helianthus annuus (sunflower) from soils with varying chemical composition and contaminated with Pu complexes (Pu-nitrate [239Pu(NO3)4], Pu-citrate [239Pu(C6H5O7)], and Pu-diethylenetriaminepentaacetic acid (Pu-DTPA [239Pu-C14H23O10N3]) was investigated. Sequential extraction of soils incubated with applied Pu was used to determine the distribution of Pu in the various soil fractions. The initial Pu activity levels in soils were 44.40-231.25 Bq g(-1) as Pu-nitrate Pu-citrate, or Pu-DTPA. A difference in Pu uptake between treatments of Pu-nitrate and Pu-citrate without chelating agent was observed only with Indian mustard in acidic Crowley soil. The uptake of Pu by plants was increased with increasing DTPA rates, however, the Pu concentration of plants was not proportionally increased with increasing application rate of Pu to soil. Plutonium uptake from Pu-DTPA was significantly higher from the acid Crowley soil than from the calcareous Weswood soil. The uptake of Pu from the soils was higher in Indian mustard than in sunflower. Sequential extraction of Pu showed that the ion-exchangeable Pu fraction in soils was dramatically increased with DTPA treatment and decreased with time of incubation. Extractability of Pu in all fractions was not different when Pu-nitrate and Pu-citrate were applied to the same soil. More Pu was associated with the residual Pu fraction without DTPA application. Consistent trends with time of incubation for other fractions were not apparent. The ion-exchangeable fraction, assumed as plant-available Pu, was significantly higher in acid soil compared with calcareous soil with or without DTPA treatment. When the calcareous soil was treated with DTPA, the ion-exchangeable Pu was comparatively less influenced. This fraction in the soil was more affected with time of incubation. The lowest extractable Pu was from a pH 6.55 Crockett soil that contained the highest clay compared to the other two soils. Extractable soil Pu was largely affected by soil pH and the amounts of clay, salt, metal oxide, and carbonate.

Mechanistic insights from DGT and soil solution measurements on the uptake of Ni and Cd by radish.

PubMed

Luo, Jun; Cheng, Hao; Ren, Jinghua; Davison, William; Zhang, Hao

2014-07-01

This work tests the previously proposed hypothesis that plant uptake of metals is determined dominantly by diffusional controlled or plant limiting uptake mechanisms at, respectively, low and high metal concentrations. Radish (Raphanus sativus) was grown in 13 soils spiked with Ni (10 and 100 mg kg(-1)) and Cd (0.5 and 4 mg kg(-1)) for 4 weeks to investigate the mechanisms affecting plant uptake. Soil solution concentrations, Css, of Ni and Cd were measured, along with the DGT interfacial concentration, CDGT, and the derived effective concentration in soil solution, CE. Free ion activities, aNi(2+) and aCd(2+), were obtained using WHAM 6. Although there was a poor relationship between Ni in radish roots and either Css or aNi(2+) in unamended soils, the distribution of data could be rationalized in terms of the extent of release of Ni from the soil solid phase, as identified by DGT and soil solution measurements. By contrast Ni in radish was linearly related to CE, demonstrating diffusion limited uptake. For soils amended with high concentrations of Ni, linear relationships were obtained for Ni in radish plotted against, Css, aNi(2+), and CE, consistent with the plant controlling uptake. For Ni the hypothesis concerning dominant diffusional and plant limiting uptake mechanisms was demonstrated. Poor relationships between Cd in radish and Css, aCd(2+), and CE, irrespective of amendment by Cd, showed the importance of factors other than diffusional supply, such as rhizosphere and inhibitory processes, and that fulfilment of this hypothesis is plant and metal specific.

Influence of arbuscular mycorrhizal fungi on antimony phyto-uptake and compartmentation in vegetables cultivated in urban gardens.

PubMed

Pierart, Antoine; Dumat, Camille; Maes, Arthur QuyManh; Sejalon-Delmas, Nathalie

2018-01-01

1. Urban areas are often contaminated with various forms of persistent metal (loid) and emerging contaminants such as antimony (Sb). Thus, in the context of urban agriculture where sustainable practices such as biofertilizers application (arbuscular mycorrhizal fungi, AMF) could improve nutrient transfer from the soil to the vegetables, the effect of AMF on metal (loid) mobility and human bioaccessibility is still poorly known. 2. The role of AMF in Sb uptake by lettuce and carrot grown in artificial substrate spiked with different Sb chemical species was investigated. Plants were grown under hydroponic conditions and half of the treatments received a concentrated spore solution to obtain mycorrhized and non-mycorrhized plants. Three weeks before harvest, plants were exposed to 10 mg.L -1 of either Sb 2 O 3 or KSbO-tartrate (KSb). 3. The presence of AMF significantly increased its accumulation in carrots (all organs) with higher accumulation in roots. In lettuce, accumulation appeared to be dependent on the Sb chemical species. Moreover, it was observed for the first time that AMF changed the human bioaccessible fraction of Sb in edible organs. 4. The present results highlight a possible risk of Sb transfer from soil to edible plants cultivated in soil naturally containing AMF propagules, or when AMF are added as biofertilizers. After validating the influence of soil environment and AMF on Sb behavior in the field, these results should be considered in health risk assessments. Copyright © 2017 Elsevier Ltd. All rights reserved.

Compensatory Root Water Uptake of Overlapping Root Systems

NASA Astrophysics Data System (ADS)

Agee, E.; Ivanov, V. Y.; He, L.; Bisht, G.; Shahbaz, P.; Fatichi, S.; Gough, C. M.; Couvreur, V.; Matheny, A. M.; Bohrer, G.

2015-12-01

Land-surface models use simplified representations of root water uptake based on biomass distributions and empirical functions that constrain water uptake during unfavorable soil moisture conditions. These models fail to capture the observed hydraulic plasticity that allows plants to regulate root hydraulic conductivity and zones of active uptake based on local gradients. Recent developments in root water uptake modeling have sought to increase its mechanistic representation by bridging the gap between physically based microscopic models and computationally feasible macroscopic approaches. It remains to be demonstrated whether bulk parameterization of microscale characteristics (e.g., root system morphology and root conductivity) can improve process representation at the ecosystem scale. We employ the Couvreur method of microscopic uptake to yield macroscopic representation in a coupled soil-root model. Using a modified version of the PFLOTRAN model, which represents the 3-D physics of variably saturated soil, we model a one-hectare temperate forest stand under natural and synthetic climatic forcing. Our results show that as shallow soil layers dry, uptake at the tree and stand level shift to deeper soil layers, allowing the transpiration stream demanded by the atmosphere. We assess the potential capacity of the model to capture compensatory root water uptake. Further, the hydraulic plasticity of the root system is demonstrated by the quick response of uptake to rainfall pulses. These initial results indicate a promising direction for land surface models in which significant three-dimensional information from large root systems can be feasibly integrated into the forest scale simulations of root water uptake.

Effects of soil properties on the transfer of cadmium from soil to wheat in the Yangtze River delta region, China--a typical industry-agriculture transition area.

PubMed

Wang, Cheng; Ji, Junfeng; Yang, Zhongfang; Chen, Lingxiao; Browne, Patrick; Yu, Ruilian

2012-08-01

In order to identify the effects of soil properties on the transfer of Cd from soil to wheat under actual field conditions, 126 pairs of topsoil and wheat samples were collected from the Yangtze River delta region, China. Relevant parameters (Cd, Ca, Mg, Fe, Mn, Zn, N, P, K, S, pH, total organic carbon, and speciation of soil Cd) in soil and wheat tissues were analyzed, and the results were treated by statistical methods. Soil samples (19.8%) and 14.3% of the wheat grain samples exceeded the relevant maximum permissible Cd concentrations in China for agricultural soil and wheat grain, respectively. The major speciations of Cd in soil were exchangeable, bound to carbonates and fulvic and humic acid fraction, and they were readily affected by soil pH, total Ca, Mg, S and P, DTPA-Fe, Ex-Ca, and Ex-Mg. Cadmium showed a strong correlation with Fe, S, and P present in the grain and the soil, whereas there was no significant correlation in the straw or root. Generally, soil pH, Ca, Mg, Mn, P, and slowly available K restricted Cd transfer from soil to wheat, whereas soil S, N, Zn, DTPA-Fe, and total organic carbon enhance Cd uptake by wheat.

Effect of summer throughfall exclusion, summer drought, and winter snow cover on methane fluxes in a temperate forest soil

USGS Publications Warehouse

Borken, W.; Davidson, E.A.; Savage, K.; Sundquist, E.T.; Steudler, P.

2006-01-01

Soil moisture strongly controls the uptake of atmospheric methane by limiting the diffusion of methane into the soil, resulting in a negative correlation between soil moisture and methane uptake rates under most non-drought conditions. However, little is known about the effect of water stress on methane uptake in temperate forests during severe droughts. We simulated extreme summer droughts by exclusion of 168 mm (2001) and 344 mm (2002) throughfall using three translucent roofs in a mixed deciduous forest at the Harvard Forest, Massachusetts, USA. The treatment significantly increased CH4 uptake during the first weeks of throughfall exclusion in 2001 and during most of the 2002 treatment period. Low summertime CH4 uptake rates were found only briefly in both control and exclusion plots during a natural late summer drought, when water contents below 0.15 g cm-3 may have caused water stress of methanotrophs in the A horizon. Because these soils are well drained, the exclusion treatment had little effect on A horizon water content between wetting events, and the effect of water stress was smaller and more brief than was the overall treatment effect on methane diffusion. Methane consumption rates were highest in the A horizon and showed a parabolic relationship between gravimetric water content and CH4 consumption, with maximum rate at 0.23 g H2O g-1 soil. On average, about 74% of atmospheric CH4 was consumed in the top 4-5 cm of the mineral soil. By contrast, little or no CH4 consumption occurred in the O horizon. Snow cover significantly reduced the uptake rate from December to March. Removal of snow enhanced CH4 uptake by about 700-1000%, resulting in uptake rates similar to those measured during the growing season. Soil temperatures had little effect on CH4 uptake as long as the mineral soil was not frozen, indicating strong substrate limitation of methanotrophs throughout the year. Our results suggest that the extension of snow periods may affect the annual rate of CH4 oxidation and that summer droughts may increase the soil CH4 sink of temperate forest soils. ?? 2005 Elsevier Ltd. All rights reserved.

Supercritical carbon dioxide extraction as a predictor of polycyclic aromatic hydrocarbon bioaccumulation and toxicity by earthworms in manufactured-gas plant site soils.

PubMed

Kreitinger, Joseph P; Quiñones-Rivera, Antonio; Neuhauser, Edward F; Alexander, Martin; Hawthorne, Steven B

2007-09-01

The toxicity and uptake of polycyclic aromatic hydrocarbons (PAHs) by earthworms were measured in soil samples collected from manufactured-gas plant sites having a wide range in PAH concentrations (170-42,000 mg/kg) and soil characteristics. Samples varied from vegetated soils to pure lampblack soot and had total organic carbon contents ranging from 3 to 87%. The biota-soil accumulation factors (BSAFs) observed for individual PAHs in field-collected earthworms (Aporrectodea caliginosa) were up to 50-fold lower than the BSAFs predicted using equilibrium-partitioning theory. Acute toxicity to the earthworm Eisenia fetida was unrelated to total PAH concentration: Mortality was not observed in some soils having high concentrations of total PAHs (>42,000 mg/kg), whereas 100% mortality was observed in other soils having much lower concentrations of total PAHs (1,520 mg/kg). Instead, toxicity appeared to be related to the rapidly released fraction of PAHs determined by mild supercritical CO2 extraction (SFE). The results demonstrate that soils having approximately 16,000 mg rapidly released total PAH/kg organic carbon can be acutely toxic to earthworms and that the concentration of PAHs in soil that is rapidly released by SFE can estimate toxicity to soil invertebrates.

Relevant role of dissolved humic matter in phosphorus bioavailability in natural and agronomical ecosystems through the formation of Humic-(Metal)-Phosphate complexes

NASA Astrophysics Data System (ADS)

Baigorri, Roberto; Urrutia, Óscar; Erro, Javier; Pazos-Pérez, Nicolás; María García-Mina, José

2016-04-01

Natural Organic Matter (NOM) and the NOM fraction present in soil solution (dissolved organic matter: DOM) are currently considered as fundamental actors in soil fertility and crop mineral nutrition. Indeed, decreases in crop yields as well as soil erosion are closely related to low values of NOM and, in fact, the use of organic amendments as both soil improvers and plant growth enhancers is very usual in countries with soils poor in NOM. This role of NOM (and DOM) seems to be associated with the presence of bio-transformed organic molecules (humic substances) with high cation chelating-complexing ability. In fact, bioavailable micronutrients with metallic character in soil solutions of alkaline and calcareous soils are forming stable complexes with DOM. This beneficial action of DOM also concerns other plant nutrients such as inorganic phosphate (Pi). Among the different mechanisms involved in the beneficial action of DOM on P bioavailability, the possible formation of poly-nuclear complexes including stable chemical bonds between negative binding sites in humic substances and Pi through metal bridges in soil solution might be relevant, especially in acidic soils. In fact, several studies have proven that these complexes can be obtained in the laboratory and are very efficient in prevent Pi soil fixation and improve Pi root uptake. However, clear experimental evidence about their presence in soil solutions of natural and agronomical soil ecosystems has not published yet. We present here experimental results supporting the real presence of stable Pi-metal-Humic (PMH) complexes in the soil solution of several acidic soils. The study is based on the physico-chemical characterization (31P-NMR, FTIR, TEM-EDAX, ICP-OES) of the DOM fraction isolated by ultrafiltration from the soil solution of several representative acidic soils. In average, more than 60 % of Pi was found in the soil solution humic fraction forming stable humic-metal (Fe, Al) complexes.

Trace Metals and Nutrients at the Soil-Root Interface of Forest Soils

NASA Astrophysics Data System (ADS)

Courchesne, F.; Seguin, V.; Legrand, P.; Cloutier-Hurteau, B.

2004-05-01

The activity of roots creates a microenvironment, known as the rhizosphere, where soil properties, processes and feedback mechanisms differ substantially from those observed in the soil matrix. Due to its proximity to the site of elemental uptake by plants, the rhizosphere is viewed as a biogeochemical hotspot characterized by massive fluxes of matter and energy. In this context, the acquisition of new knowledge on the rhizosphere is crucial to increase our capacity to understand, manage and model soil-plants systems. Of particular interest to scientists is the response of the rhizosphere to perturbations of natural (e.g. climatic fluctuations) or anthropogenic (e.g. soil contamination) origin. Moreover, results from rhizosphere research help define new approaches designed either to restrict the entrance of potentially toxic elements in crops and, hence, in the food chain or, contrarily, to increase the uptake of trace elements by plants in contaminated environments to be bioremediated. Our recent studies in forested environments have clearly established that the rhizosphere (Abies, Acer, Betula, Picea, Pinus or Populus roots) is more acidic than the soil matrix and that it is enriched in organic substances (dissolved and solid), nutrient cations (Ca, Mg) and trace metals. Indeed, the rhizosphere systematically acts as a sink for Cd, Cu, Ni, Pb and Zn, notably under bioavailable (water-soluble and salt-extractable) forms. Yet, the relative activity of free metal ions is lower in the rhizosphere, as shown for Cu++, probably as a consequence of the higher DOC content. The corrosive environment forming in the rhizosphere, as controlled by the release of H+ ions and of organic acids, also impacts on mineral assemblages through an increase in the weathering of primary minerals (amphiboles, plagioclases) and the formation of secondary solid phases such as Fe and Al oxides. Some of the research avenues currently investigated by our research group include the quantification of functional links between organic carbon, microbial activity and metal speciation, the development of methodological and analytical approaches operating at the spatial scale of the rhizosphere and, the assessment of preferential hydrological fluxes along root networks.

Sorption characteristics of organic compounds on hexadecyltrimethylammonium-smectite

USGS Publications Warehouse

Boyd, Stephen A.; Mortland, Max M.; Chiou, Cary T.

1988-01-01

When hexadedyltrimethylammonium (HDTMA) ion is exchanged for metal cations like calcium in smectite, the sorptive properties of the clay are greatly modified. The resultant HDTMA-smectite complex behaves as a dual sorbent, in the sorption of organic compounds, in which the mineral fraction functions as a solid adsorbent and the organic (HDTMA) phase as a partition medium. Capacities of mineral adsorption and partition uptake by HDTMA in the HDTMA-smectites are illustrated by sorption of benzene, trichloroethene (TCE), and water as vapors on the dry sample and by sorption of benzene and TCE from water. The exchanged HDTMA in clay is found to be a much more powerful partition medium than ordinary soil organic matter in the uptake of benzene and TCE. Based on this finding, HDTMA-smectite appears to be an effective sorbent for removing organic contaminants from water. It is suggested that such sorptive organo-clay complexes could be used to enhance the containment capabilities of clay landfill liners and bentonite slurry walls.

Bioaccumulation and phyto-translocation of arsenic, chromium and zinc by Jatropha curcas L.: impact of dairy sludge and biofertilizer.

PubMed

Yadav, Santosh Kumar; Juwarkar, Asha A; Kumar, G Phani; Thawale, Prashant R; Singh, Sanjeev K; Chakrabarti, Tapan

2009-10-01

The present study was planned to remediate the metalloid and metal contaminated soil by using non-edible and economic plant species Jatropha curcas L. The experiment was conducted on pots to improve the survival rate, metal tolerance and growth response of the plant on soil; having different concentrations of arsenic, chromium and zinc. The soil was amended with dairy sludge and bacterial inoculum (Azotobacter chroococcum) as biofertilizer. The results of the study showed that the bioaccumulation potential was increased with increase in metalloid and metal concentration in soil system. Application of dairy sludge significantly reduces the DTPA-extractable As, Cr and Zn concentration in soil. The application of organic amendment stabilizes the As, Cr and Zn and reduced their uptake in plant tissues.

134Cs uptake by four plant species and Cs-K relations in the soil-plant system as affected by Ca(OH)2 application to an acid soil.

PubMed

Massas, I; Skarlou, V; Haidouti, C; Giannakopoulou, F

2010-03-01

Three rates of Ca(OH)(2) were applied to an acid soil and the (134)Cs uptake by radish, cucumber, soybean and sunflower plants was studied. The (134)Cs concentration in all plant species was reduced from 1.6-fold in the sunflower seeds to 6-fold in the soybean vegetative parts at the higher Ca(OH)(2) rate. Potassium (K) concentration in plants was also reduced, but less effectively. The significantly decreased (134)Cs-K soil to plant distribution factors (D.F.) clearly suggest a stronger effect of soil liming on (134)Cs than on K plant uptake. This observation was discussed in terms of ionic interactions in the soil matrix and within the plants. The results also indicated that the increased Ca(2+) concentration in the exchange phase and in the soil solution along with the improved root activity, due to the soil liming, enhanced the immobilization of (134)Cs in the soil matrix and consequently lowered the (134)Cs availability for plant uptake. 2009 Elsevier Ltd. All rights reserved.

Organic matter and salinity modify cadmium soil (phyto)availability.

PubMed

Filipović, Lana; Romić, Marija; Romić, Davor; Filipović, Vilim; Ondrašek, Gabrijel

2018-01-01

Although Cd availability depends on its total concentration in soil, it is ultimately defined by the processes which control its mobility, transformations and soil solution speciation. Cd mobility between different soil fractions can be significantly affected by certain pedovariables such as soil organic matter (SOM; over formation of metal-organic complexes) and/or soil salinity (over formation of metal-inorganic complexes). Phytoavailable Cd fraction may be described as the proportion of the available Cd in soil which is actually accessible by roots and available for plant uptake. Therefore, in a greenhouse pot experiment Cd availability was observed in the rhizosphere of faba bean exposed to different levels of SOM, NaCl salinity (50 and 100mM) and Cd contamination (5 and 10mgkg -1 ). Cd availability in soil does not linearly follow its total concentration. Still, increasing soil Cd concentration may lead to increased Cd phytoavailability if the proportion of Cd 2+ pool in soil solution is enhanced. Reduced Cd (phyto)availability by raised SOM was found, along with increased proportion of Cd-DOC complexes in soil solution. Data suggest decreased Cd soil (phyto)availability with the application of salts. NaCl salinity affected Cd speciation in soil solution by promoting the formation of CdCl n 2-n complexes. Results possibly suggest that increased Cd mobility in soil does not result in its increased availability if soil adsorption capacity for Cd has not been exceeded. Accordingly, chloro-complex possibly operated just as a Cd carrier between different soil fractions and resulted only in transfer between solid phases and not in increased (phyto)availability. Copyright © 2017 Elsevier Inc. All rights reserved.

Atmospheric CO and hydrogen uptake and CO oxidizer phylogeny for miyake-jima, Japan volcanic deposits.

PubMed

King, Gary M; Weber, Carolyn F; Nanba, Kenji; Sato, Yoshinori; Ohta, Hiroyuki

2008-01-01

We have assayed rates of atmospheric CO and hydrogen uptake, maximum potential CO uptake and the major phylogenetic composition of CO-oxidizing bacterial communities for a variety of volcanic deposits on Miyake-jima, Japan. These deposits represented different ages and stages of plant succession, ranging from unvegetated scoria deposited in 1983 to forest soils on deposits >800 yr old. Atmospheric CO and hydrogen uptake rates varied from -2.0±1.8-6.3±0.1 mg CO m(-2) d(-1) and 0.0±0.4-2.0±0.2 mg H(2) m(-2) d(-1), respectively, and were similar to or greater than values reported for sites on Kilauea volcano, Hawaii, USA. At one of the forested sites, CO was emitted to the atmosphere, while two vegetated sites did not consume atmospheric hydrogen, an unusual observation. Although maximum potential CO uptake rates were also comparable to values for Kilauea, the relationship between these rates and organic carbon contents of scoria or soil indicated that CO oxidizers were relatively more abundant in Miyake-jima deposits. Phylogenetic analyses based on the large sub-unit gene for carbon monoxide dehydrogenase (coxL) indicated that many novel lineages were present on Miyake-jima, that CO-oxidizing Proteobacteria were prevalent in vegetated sites and that community structure appeared to vary more than composition among sites.

The Combined Role Of Manganese Oxides And Microbes In The yAbiotic Uptake Of Amino Acid Nitrogen Into Litter And Soil Organic yMatter

NASA Astrophysics Data System (ADS)

Filley, T. R.; Dria, K.

2004-12-01

Soil organic matter (SOM) is the largest terrestrial C and N store. Microbial yand abiotic processes that control the transformation of protein nitrogen in litter and ysoils into macromolecular humic materials play an important role in organic matter ystorage and soil productivity. There are major gaps, however, in our understanding of ythese processes and behaviors. Abiotic reactions of amines, phenols and sugars derived yfrom forest leachates or present in detrital and litter organic matter are known to be ykey processes in the formation of complex organic nitrogen. We present here the yresults from a study designed to investigate how the inherent chemistry of lignin, leaf ylitter, and progressively advanced brown-rot wood decay impact the chemical reaction yof amino acids with this organic matter. Additionally, experiments in the presence of ybirnessite (MnO2) were also conducted to investigate the role of mineral induced phenol yoxidation on specific amino acid chemical humifcation processes. Solid and liquid state yNMR, 13C-labelled tetramethyl ammonium hydroxide thermochemolysis and stable ycarbon and nitrogen isotope ratio mass spectrometry were used to track the alteration yof litter material and document uptake of 13C and 15N labeled amino acids. yPreliminary results from birnessite-containing experiments suggest that the metal-ypromoted oxidation of the lignin, leaf litter, and, in particular, demethylated brown rot ywood residues, is necessary to convert the phenols to quinones of some type permitting yamine addition. This relationship is particularly true for the production of soluble yfractions after two and six weeks of reaction in the presence of the manganese oxides. yAdditionally, the production of leachable organic matter with incorporated N was ypromoted in the soluble fractions. Ongoing NMR studies will elucidate the nature of ythe chemical binding in these experiments. y

Availability of polycyclic aromatic hydrocarbons to earthworms (Eisenia andrei, Oligochaeta) in field-polluted soils and soil-sediment mixtures.

PubMed

Jager, Tjalling; Baerselman, Rob; Dijkman, Ellen; de Groot, Arthur C; Hogendoorn, Elbert A; de Jong, Ad; Kruitbosch, Jantien A W; Peijnenburg, Willie J G M

2003-04-01

The bioavailability of polycyclic aromatic hydrocarbons (PAHs) for earthworms (Eisenia andrei) was experimentally determined in seven field-polluted soils and 15 soil-sediment mixtures. The pore-water concentration of most PAHs was higher than predicted. However, most of the compound was associated with dissolved organic carbon (DOC) and not directly available for uptake by earthworms. The apparent sorption could be reasonably predicted on the basis of interactions with DOC; however, the biota-soil accumulation factors (BSAFs) for earthworms were up to two orders of magnitude lower than predicted by equilibrium partitioning. The large variability between sites was not fully explained by differences in sorption. Experimental results indicate that the pool of freely dissolved PAHs in the pore water became partially depleted because of uptake by the earthworms and that bioaccumulation is thus also influenced by the kinetics of PAH desorption and mass transport. A pilot study with Lumbricus rubellus showed that steady-state body residues were well correlated to E. andrei. Current results show that depositing dredge spoil on land may lead to increased bioavailability of the lower-molecular-weight PAHs. However, risk assessment can conservatively rely on equilibrium partitioning, but accurate prediction requires quantification of the kinetics of bioavailability.

Biochar as possible long-term soil amendment for phytostabilisation of TE-contaminated soils.

PubMed

Bopp, Charlotte; Christl, Iso; Schulin, Rainer; Evangelou, Michael W H

2016-09-01

Soils contaminated by trace elements (TEs) pose a high risk to their surrounding areas as TEs can spread by wind and water erosion or leaching. A possible option to reduce TE transfer from these sites is phytostabilisation. It is a long-term and cost-effective rehabilitation strategy which aims at immobilising TEs within the soil by vegetation cover and amendment application. One possible amendment is biochar. It is charred organic matter which has been shown to immobilise metals due to its high surface area and alkaline pH. Doubts have been expressed about the longevity of this immobilising effect as it could dissipate once the carbonates in the biochar have dissolved. Therefore, in a pot experiment, we determined plant metal uptake by ryegrass (Lolium perenne) from three TE-contaminated soils treated with two biochars, which differed only in their pH (acidic, 2.80; alkaline, 9.33) and carbonate (0.17 and 7.3 %) content. Root biomass was increased by the application of the alkaline biochar due to the decrease in TE toxicity. Zinc and Cu bioavailability and plant uptake were equally reduced by both biochars, showing that surface area plays an important role in metal immobilisation. Biochar could serve as a long-term amendment for TE immobilisation even after its alkalinity effect has dissipated.

Behavioral response and kinetics of terrestrial atrazine exposure in American toads (bufo americanus)

USGS Publications Warehouse

Storrs, Mendez S.I.; Tillitt, D.E.; Rittenhouse, T.A.G.; Semlitsch, R.D.

2009-01-01

Amphibians in terrestrial environments obtain water through a highly vascularized pelvic patch of skin. Chemicals can also be exchanged across this patch. Atrazine (ATZ), a widespread herbicide, continues to be a concern among amphibian ecologists based on potential exposure and toxicity. Few studies have examined its impact on the terrestrial juvenile or adult stages of toads. In the current study, we asked the following questions: (1) Will juvenile American toads (Bufo americanus) avoid soils contaminated with ATZ? (2) Can they absorb ATZ across the pelvic patch? (3) If so, how is it distributed among the organs and eventually eliminated? We conducted a behavioral choice test between control soil and soil dosed with ecologically relevant concentrations of ATZ. In addition, we examined the uptake, distribution, and elimination of water dosed with 14C-labeled ATZ. Our data demonstrate that toads do not avoid ATZ-laden soils. ATZ crossed the pelvic patch rapidly and reached an apparent equilibrium within 5 h. The majority of the radiolabeled ATZ ended up in the intestines, whereas the greatest concentrations were observed in the gall bladder. Thus, exposure of adult life stages of amphibians through direct uptake of ATZ from soils and runoff water should be considered in risk evaluations. ?? 2009 Springer Science+Business Media, LLC.

Estimating terrestrial amphibian pesticide body burden through dermal exposure.

PubMed

Van Meter, Robin J; Glinski, Donna A; Hong, Tao; Cyterski, Mike; Henderson, W Matthew; Purucker, S Thomas

2014-10-01

Dermal exposure presents a potentially significant but understudied route for pesticide uptake in terrestrial amphibians. Our study measured dermal uptake of pesticides of varying hydrophobicity (logKow) in frogs. Amphibians were indirectly exposed to one of five pesticide active ingredients through contact with contaminated soil: imidacloprid (logKow = 0.57), atrazine (logKow = 2.5), triadimefon (logKow = 3.0), fipronil (logKow = 4.11) or pendimethalin (logKow = 5.18). All amphibians had measurable body burdens at the end of the exposure in concentrations ranging from 0.019 to 14.562 μg/g across the pesticides tested. Atrazine produced the greatest body burdens and bioconcentration factors, but fipronil was more permeable to amphibian skin when application rate was considered. Soil partition coefficient and water solubility were much better predictors of pesticide body burden, bioconcentration factor, and skin permeability than logKow. Dermal uptake data can be used to improve risk estimates of pesticide exposure among amphibians as non-target organisms. Copyright © 2014 Elsevier Ltd. All rights reserved.

Growth and (137)Cs uptake of four Brassica species influenced by inoculation with a plant growth-promoting rhizobacterium Bacillus pumilus in three contaminated farmlands in Fukushima prefecture, Japan.

PubMed

Aung, Han Phyo; Djedidi, Salem; Oo, Aung Zaw; Aye, Yi Swe; Yokoyama, Tadashi; Suzuki, Sohzoh; Sekimoto, Hitoshi; Bellingrath-Kimura, Sonoko Dorothea

2015-07-15

The effectiveness of the plant growth-promoting rhizobacterium Bacillus pumilus regarding growth promotion and radiocesium ((137)Cs) uptake was evaluated in four Brassica species grown on different (137)Cs contaminated farmlands at Fukushima prefecture in Japan from June to August 2012. B. pumilus inoculation did not enhance growth in any of the plants, although it resulted in a significant increase of (137)Cs concentration and higher (137)Cs transfer from the soil to plants. The Brassica species exhibited different (137)Cs uptake abilities in the order Komatsuna>turnip>mustard>radish. TF values of (137)Cs ranged from 0.018 to 0.069 for all vegetables. Komatsuna possessed the largest root surface area and root volume, and showed a higher (137)Cs concentration in plant tissue and higher (137)Cs TF values (0.060) than the other vegetables. Higher (137)Cs transfer to plants was prominent in soil with a high amount of organic matter and an Al-vermiculite clay mineral type. Copyright © 2015 Elsevier B.V. All rights reserved.

Siderophores mediate reduced and increased uptake of cadmium by Streptomyces tendae F4 and sunflower (Helianthus annuus), respectively.

PubMed

Dimkpa, C O; Merten, D; Svatos, A; Büchel, G; Kothe, E

2009-11-01

As a toxic metal, cadmium (Cd) affects microbial and plant metabolic processes, thereby potentially reducing the efficiency of microbe or plant-mediated remediation of Cd-polluted soil. The role of siderophores produced by Streptomyces tendae F4 in the uptake of Cd by bacteria and plant was investigated to gain insight into the influence of siderophores on Cd availability to micro-organisms and plants. The bacterium was cultured under siderophore-inducing conditions in the presence of Cd. The kinetics of siderophore production and identification of the siderophores and their metal-bound forms were performed using electrospray ionization mass spectrometry. Inductively coupled plasma spectroscopy was used to measure iron (Fe) and Cd contents in the bacterium and in sunflower plant grown in Cd-amended soil. Siderophores significantly reduced the Cd uptake by the bacterium, while supplying it with iron. Bacterial culture filtrates containing three hydroxamate siderophores secreted by S. tendae F4 significantly promoted plant growth and enhanced uptake of Cd and Fe by the plant, relative to the control. Furthermore, application of siderophores caused slightly more Cd, but similar Fe uptake, compared with EDTA. Bioinoculation with Streptomyces caused a dramatic increase in plant Fe content, but resulted only in slight increase in plant Cd content. It is concluded that siderophores can help reduce toxic metal uptake in bacteria, while simultaneously facilitating the uptake of such metals by plants. Also, EDTA is not superior to hydroxamate siderophores in terms of metal solubilization for plant uptake. The study showed that microbial processes could indirectly influence the availability and amount of toxic metals taken up from the rhizosphere of plants. Furthermore, although EDTA is used for chelator-enhanced phytoremediation, microbial siderophores would be ideal for this purpose.

Copper, zinc, and cadmium in various fractions of soil and fungi in a Swedish forest.

PubMed

Vinichuk, Mykhailo M

2013-01-01

Ectomycorrhizal fungi profoundly affect forest ecosystems through mediating nutrient uptake and maintaining forest food webs. The accumulation of metals in each transfer step from bulk soil to fungal sporocarps is not well known. The accumulation of three metals copper (Cu), zinc (Zn) and cadmium (Cd) in bulk soil, rhizosphere, soil-root interface, fungal mycelium and sporocarps of mycorrhizal fungi in a Swedish forest were compared. Concentrations of all three metals increased in the order: bulk soil < soil-root interface (or rhizosphere) < fungal mycelium < fungal sporocarps. The uptake of Cu, Zn and Cd during the entire transfer process in natural conditions between soil and sporocarps occurred against a concentration gradient. In fungal mycelium, the concentration of all three metals was about three times higher than in bulk soil, and the concentration in sporocarps was about two times higher than in mycelium. In terms of accumulation, fungi (mycelium and sporocarps) preferred Cd to Zn and Cu. Zinc concentration in sporocarps and to a lesser extent in mycelium depended on the concentration in soil, whereas, the uptake of Cu and Cd by both sporocarps and mycelium did not correlate with metal concentration in soil. Heavy metal accumulation within the fungal mycelium biomass in the top forest soil layer (0-5 cm) might account for ca. 5-9% of the total amount of Cu, 5-11% of Zn, and 16-32% of Cd. As the uptake of zinc and copper by fungi may be balanced, this implied similarities in the uptake mechanism.

Effect of biosludge and biofertilizer amendment on growth of Jatropha curcas in heavy metal contaminated soils.

PubMed

Juwarkar, Asha Ashok; Yadav, Santosh Kumar; Kumar, Phani; Singh, Sanjeev Kumar

2008-10-01

The pot experiments were conducted to evaluate the effect of different concentrations of arsenic, chromium and zinc contaminated soils, amended with biosludge and biofertilizer on the growth of Jatropha curcas which is a biodiesel crop. The results further showed that biosludge alone and in combination with biofertilizer significantly improved the survival rates and enhanced the growth of the plant. With the amendments, the plant was able to grow and survive upto 500, 250 and 4,000 mg kg(-1) of As, Cr and Zn contaminated soils, respectively. The results also showed that zinc enhanced the growth of J. curcas more as compared to other metals contaminated soils. The heavy metal accumulation in plant increased with increasing concentrations of heavy metals in soil, where as a significant reduction in the metal uptake in plant was observed, when amended with biosludge and biofertilizer and biosludge alone. It seems that the organic matter present in the biosludge acted as metal chelator thereby reducing the toxicity of metals to the plant. Findings suggest that plantation of J. curcas may be promoted in metal contaminated soils, degraded soils or wasteland suitably after amending with organic waste.

Improved exposure estimation in soil screening and cleanup criteria for volatile organic chemicals.

PubMed

DeVaull, George E

2017-09-01

Soil cleanup criteria define acceptable concentrations of organic chemical constituents for exposed humans. These criteria sum the estimated soil exposure over multiple pathways. Assumptions for ingestion, dermal contact, and dust exposure generally presume a chemical persists in surface soils at a constant concentration level for the entire exposure duration. For volatile chemicals, this is an unrealistic assumption. A calculation method is presented for surficial soil criteria that include volatile depletion of chemical for these uptake pathways. The depletion estimates compare favorably with measured concentration profiles and with field measurements of soil concentration. Corresponding volatilization estimates compare favorably with measured data for a wide range of volatile and semivolatile chemicals, including instances with and without the presence of a mixed-chemical residual phase. Selected examples show application of the revised factors in estimating screening levels for benzene in surficial soils. Integr Environ Assess Manag 2017;13:861-869. © 2017 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals, Inc. on behalf of Society of Environmental Toxicology & Chemistry (SETAC). © 2017 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals, Inc. on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Phosphorus cycling in natural and low input soil/plant systems: the role of soil microorganisms

NASA Astrophysics Data System (ADS)

Tamburini, F.; Bünemann, E. K.; Oberson, A.; Bernasconi, S. M.; Frossard, E.

2011-12-01

Availability of phosphorus (as orthophosphate, Pi) limits biological production in many terrestrial ecosystems. During the first phase of soil development, weathering of minerals and leaching of Pi are the processes controlling Pi concentrations in the soil solution, while in mature soils, Pi is made available by desorption of mineral Pi and mineralization of organic compounds. In agricultural soils additional Pi is supplied by fertilization, either with mineral P and/or organic inputs (animal manure or plant residues). Soil microorganisms (bacteria and fungi) mediate several processes, which are central to the availability of Pi to plants. They play a role in the initial release of Pi from the mineral phase, and through extracellular phosphatase enzymes, they decompose and mineralize organic compounds, releasing Pi. On the other hand, microbial immobilization and internal turnover of Pi can decrease the soil available Pi pool, competing in this way with plants. Using radio- and stable isotopic approaches, we show evidence from different soil/plant systems which points to the central role of the microbial activity. In the presented case studies, P contained in the soil microbial biomass is a larger pool than available Pi. In a soil chronosequence after deglaciation, stable isotopes of oxygen associated to phosphate showed that even in the youngest soils microbial activity highly impacted the isotopic signature of available Pi. These results suggested that microorganisms were rapidly taking up and cycling Pi, using it to sustain their community. Microbial P turnover time was faster in the young (about 20 days) than in older soils (about 120 days), reflecting a different functioning of the microbial community. Microbial community crashes, caused by drying/rewetting and freezing/thawing cycles, were most likely responsible for microbial P release to the available P pool. In grassland fertilization experiments with mineral NK and NPK amendments, microbial P turnover was faster in the P-free treatment. Laboratory incubation also showed a more rapid P uptake by microbial biomass in the NK than in the NPK treatment (37% and 6% of added 33P recovered in microbial P after 100 minutes in NK and NPK, respectively). The seasonal microbial P flux in both treatments was 1.5-4 times larger than the annual plant P uptake. In field studies carried out on highly weathered low P soils in Colombia, the comparison between grass-legume and grass-only pastures showed that the presence of legumes had an impact on the overall biological activity. In fact, microbial biomass and phosphatase activity were significantly larger in grass-legume pastures than in the legume-free experiments. Larger release of Pi from the organic P pool improved P availability to plants and pointed at a modified C:N:P stoichiometry along pathways of the nutrient cycle in the soil/plant system. All these data are evidence of a highly dynamic microbial P pool, which controls Pi concentration and, hence, availability for plants in natural and low input agricultural ecosystems.

Sorptive and desorptive fractionation of dissolved organic matter by mineral soil matrices.

PubMed

Oren, Adi; Chefetz, Benny

2012-01-01

Interactions of dissolved organic matter (DOM) with soil minerals, such as metal oxides and clays, involve various sorption mechanisms and may lead to sorptive fractionation of certain organic moieties. While sorption of DOM to soil minerals typically involves a degree of irreversibility, it is unclear which structural components of DOM correspond to the irreversibly bound fraction and which factors may be considered determinants. To assist in elucidating that, the current study aimed at investigating fractionation of DOM during sorption and desorption processes in soil. Batch DOM sorption and desorption experiments were conducted with organic matter poor, alkaline soils. Fourier-transform infrared (FTIR) and UV-Vis spectroscopy were used to analyze bulk DOM, sorbed DOM, and desorbed DOM fractions. Sorptive fractionation resulted mainly from the preferential uptake of aromatic, carboxylic, and phenolic moieties of DOM. Soil metal-oxide content positively affected DOM sorption and binding of some specific carboxylate and phenolate functional groups. Desorptive fractionation of DOM was expressed by the irreversible-binding nature of some carboxylic moieties, whereas other bound carboxylic moieties were readily desorbed. Inner-sphere, as opposed to outer-sphere, ligand-exchange complexation mechanisms may be responsible for these irreversible, as opposed to reversible, interactions, respectively. The interaction of aliphatic DOM constituents with soil, presumably through weak van der Waals forces, was minor and increased with increasing proportion of clay minerals in the soil. Revealing the nature of DOM-fractionation processes is of great importance to understanding carbon stabilization mechanisms in soils, as well as the overall fate of contaminants that might be associated with DOM. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Polybrominated diphenyl ether (PBDE) accumulation by earthworms (Eisenia fetida) exposed to biosolids-, polyurethane foam microparticle-, and Penta-BDE-amended soils.

PubMed

Gaylor, Michael O; Harvey, Ellen; Hale, Robert C

2013-12-03

Polybrominated diphenyl ether (PBDE) flame retardants have been used in consumer polymers at up to percent levels. While long viewed as biologically inaccessible therein, PBDEs may become bioaccessible following volatilization or polymer deterioration. PBDEs may then enter soils via polymer fragmentation or following land application of sewage sludge-derived biosolids. Studies of direct PBDE uptake from these materials by soil organisms are scarce. We thus exposed earthworms ( Eisenia fetida ) to artificial soil amended with a Class B anaerobically digested biosolid (ADB), an exceptional quality composted biosolid (CB), PBDE-containing polyurethane foam (PUF) microparticles, and Penta-BDE-spiked artificial soil (SAS). Worms accumulated mg/kg (lipid) ∑Penta-PBDE burdens from all substrates. Biota-soil accumulation factors (BSAFs) for worms exposed to ADB- and CB-amended soils were comparable after 28 d. BSAFs generally decreased with increasing congener KOW and substrate dosage. Biosolids-associated PBDE bioavailability was lower than spiked PBDEs. BSAFs for worms exposed to PUF microparticles ranged from 3.9 to 33.4, with ∑Penta-PBDE tissue burdens reaching 3740 mg/kg lipid. Congener accumulation patterns were similar in worms and polyethylene passive sampling devices immersed in ADB-amended soil coincident with exposed worms. However, passive sampler accumulation factors were lower than BSAFs. Our results demonstrate that PBDEs may accumulate in organisms ingesting soils containing biosolids or waste plastics. Such organisms may then transfer their burdens to predators or translocate them from the site of application/disposal.

Effects of soil type, prepercolation, and ageing on bioaccumulation and toxicity of zinc for the springtail Folsomia candida

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smit, C.E.; Van Gestel, C.A.M.

1998-06-01

Soil properties are a major influence on the bioavailability and toxicity of metals and represent one of the important factors that complicate the extrapolation of results from laboratory tests to field situations. The influence of soil characteristics and way of contamination on the bioaccumulation and toxicity of zinc was investigated for the springtail Folsomia candida, and the applicability of chemical extraction techniques for the prediction of zinc uptake and toxicity was evaluated. Bioaccumulation of zinc in F. candida was related to water-soluble zinc concentrations, and uptake was dependent on the test soil used. Effects of zinc for F. candida couldmore » not be fully explained by bioaccumulation. This indicates that the existence of a fixed internal threshold concentration of zinc above which physiological functions are impaired is not likely for F. candida. In freshly contaminated soils, zinc toxicity was related to organic matter and clay content of the soil; however, the use of these soils overestimated the effects of zinc for F. candida by a factor of 5 to 8 compared to a test soil that was subjected to ageing under field conditions for 1.5 years. Equilibration of the zinc contamination by percolating the soils with water before use in the toxicity experiment strongly reduced the difference in zinc toxicity between laboratory-treated and aged soils. Water-soluble concentrations are most appropriate to predict effects of zinc on reproduction of F. candida in soils with unknown contamination histories. For laboratory toxicity tests, it is recommended to percolate soils with water after contamination and to include an equilibration period prior to use to achieve a more realistic exposure situation.« less

A partition-limited model for the plant uptake of organic contaminants from soil and water

USGS Publications Warehouse

Chiou, C.T.; Sheng, G.; Manes, M.

2001-01-01

In dealing with the passive transport of organic contaminants from soils to plants (including crops), a partition-limited model is proposed in which (i) the maximum (equilibrium) concentration of a contaminant in any location in the plant is determined by partition equilibrium with its concentration in the soil interstitial water, which in turn is determined essentially by the concentration in the soil organic matter (SOM) and (ii) the extent of approach to partition equilibrium, as measured by the ratio of the contaminant concentrations in plant water and soil interstitial water, ??pt (??? 1), depends on the transport rate of the contaminant in soil water into the plant and the volume of soil water solution that is required for the plant contaminant level to reach equilibrium with the external soil-water phase. Through reasonable estimates of plant organic-water compositions and of contaminant partition coefficients with various plant components, the model accounts for calculated values of ??pt in several published crop-contamination studies, including near-equilibrium values (i.e., ??pt ??? 1) for relatively water-soluble contaminants and lower values for much less soluble contaminants; the differences are attributed to the much higher partition coefficients of the less soluble compounds between plant lipids and plant water, which necessitates much larger volumes of the plant water transport for achieving the equilibrium capacities. The model analysis indicates that for plants with high water contents the plant-water phase acts as the major reservoir for highly water-soluble contaminants. By contrast, the lipid in a plant, even at small amounts, is usually the major reservoir for highly water-insoluble contaminants.

Assisted phytoremediation of Cd-contaminated soil using poplar rooted cuttings

NASA Astrophysics Data System (ADS)

Alizadeh, S.; Zahedi-Amiri, G.; Savaghebi-Firoozabadi, G.; Etemad, V.; Shirvany, A.; Shirmardi, M.

2012-07-01

To investigate the effect of amended substrates on cadmium uptake by one-year old poplar rooted cuttings a pot culture was carried out. Pots were filled with three substrates. Four treatments of Cd supply including were organized. The results showed that higher biomass productions in substrates A and B compare to substrate C, led to an increase total Cd uptake two times more than that in substrate C, at 150 mg kg-1 concentration. Meanwhile maximum total uptake occurred in substrate B at 100 mg kg-1 concentration. Using synthetic chelators such as ethylenediaminetetraacetic acid in order to achieve high removal rate led to increased environmental impacts while they are not expected when such environmental friendly approaches are applied.

Uptake dynamics of inorganic mercury and methylmercury by the earthworm Pheretima guillemi.

PubMed

Dang, Fei; Zhao, Jie; Zhou, Dongmei

2016-02-01

Mercury uptake dynamics in the earthworm Pheretima guillemi, including the dissolved uptake rate constant (ku) from pore-water and assimilation efficiencies (AEs) from mercury-contaminated soil, was quantified in this study. Dissolved uptake rate constants were 0.087 and 0.553 L g(-1) d(-1) for inorganic mercury (IHg) and methylmercury (MeHg), respectively. Assimilation efficiency of IHg in field-contaminated soil was 7.2%, lower than 15.4% of spiked soil. In contrast, MeHg exhibited comparable AEs for both field-contaminated and spiked soil (82.4-87.2%). Within the framework of biodynamic model, we further modelled the exposure pathways (dissolved exposure vs soil ingestion) to source the accumulated mercury in Pheretima guillemi. The model showed that the relative importance of soil ingestion to mercury bioaccumulation depended largely on mercury partitioning coefficients (K(d)), and was also influenced by soil ingestion rate of earthworms. In the examined field-contaminated soil, almost (>99%) accumulated IHg and MeHg was predicted to derive from soil ingestion. Therefore, soil ingestion should be carefully considered when assessing mercury exposure risk to earthworms. Copyright © 2015 Elsevier Ltd. All rights reserved.

Concomitant uptake of antimicrobials and Salmonella in soil and into lettuce following wastewater irrigation.

PubMed

Sallach, J Brett; Zhang, Yuping; Hodges, Laurie; Snow, Daniel; Li, Xu; Bartelt-Hunt, Shannon

2015-02-01

The use of wastewater for irrigation may introduce antimicrobials and human pathogens into the food supply through vegetative uptake. The objective of this study was to investigate the uptake of three antimicrobials and Salmonella in two lettuce cultivars. After repeated subirrigation with synthetic wastewater, lettuce leaves and soil were collected at three sequential harvests. The internalization frequency of Salmonella in lettuce was low. A soil horizon-influenced Salmonella concentration gradient was determined with concentrations in bottom soil 2 log CFU/g higher than in top soil. Lincomycin and sulfamethoxazole were recovered from lettuce leaves at concentrations as high as 822 ng/g and 125 ng/g fresh weight, respectively. Antimicrobial concentrations in lettuce decreased from the first to the third harvest suggesting that the plant growth rate may exceed antimicrobial uptake rates. Accumulation of antimicrobials was significantly different between cultivars demonstrating a subspecies level variation in uptake of antibiotics in lettuce. Copyright © 2014 Elsevier Ltd. All rights reserved.

Underestimation of boreal soil carbon stocks by mathematical soil carbon models linked to soil nutrient status

NASA Astrophysics Data System (ADS)

Ťupek, Boris; Ortiz, Carina A.; Hashimoto, Shoji; Stendahl, Johan; Dahlgren, Jonas; Karltun, Erik; Lehtonen, Aleksi

2016-08-01

Inaccurate estimate of the largest terrestrial carbon pool, soil organic carbon (SOC) stock, is the major source of uncertainty in simulating feedback of climate warming on ecosystem-atmosphere carbon dioxide exchange by process-based ecosystem and soil carbon models. Although the models need to simplify complex environmental processes of soil carbon sequestration, in a large mosaic of environments a missing key driver could lead to a modeling bias in predictions of SOC stock change.We aimed to evaluate SOC stock estimates of process-based models (Yasso07, Q, and CENTURY soil sub-model v4) against a massive Swedish forest soil inventory data set (3230 samples) organized by a recursive partitioning method into distinct soil groups with underlying SOC stock development linked to physicochemical conditions.For two-thirds of measurements all models predicted accurate SOC stock levels regardless of the detail of input data, e.g., whether they ignored or included soil properties. However, in fertile sites with high N deposition, high cation exchange capacity, or moderately increased soil water content, Yasso07 and Q models underestimated SOC stocks. In comparison to Yasso07 and Q, accounting for the site-specific soil characteristics (e. g. clay content and topsoil mineral N) by CENTURY improved SOC stock estimates for sites with high clay content, but not for sites with high N deposition.Our analysis suggested that the soils with poorly predicted SOC stocks, as characterized by the high nutrient status and well-sorted parent material, indeed have had other predominant drivers of SOC stabilization lacking in the models, presumably the mycorrhizal organic uptake and organo-mineral stabilization processes. Our results imply that the role of soil nutrient status as regulator of organic matter mineralization has to be re-evaluated, since correct SOC stocks are decisive for predicting future SOC change and soil CO2 efflux.

Modelling Water Uptake Provides a New Perspective on Grass and Tree Coexistence

PubMed Central

2015-01-01

Root biomass distributions have long been used to infer patterns of resource uptake. These patterns are used to understand plant growth, plant coexistence and water budgets. Root biomass, however, may be a poor indicator of resource uptake because large roots typically do not absorb water, fine roots do not absorb water from dry soils and roots of different species can be difficult to differentiate. In a sub-tropical savanna, Kruger Park, South Africa, we used a hydrologic tracer experiment to describe the abundance of active grass and tree roots across the soil profile. We then used this tracer data to parameterize a water movement model (Hydrus 1D). The model accounted for water availability and estimated grass and tree water uptake by depth over a growing season. Most root biomass was found in shallow soils (0–20 cm) and tracer data revealed that, within these shallow depths, half of active grass roots were in the top 12 cm while half of active tree roots were in the top 21 cm. However, because shallow soils provided roots with less water than deep soils (20–90 cm), the water movement model indicated that grass and tree water uptake was twice as deep as would be predicted from root biomass or tracer data alone: half of grass and tree water uptake occurred in the top 23 and 43 cm, respectively. Niche partitioning was also greater when estimated from water uptake rather than tracer uptake. Contrary to long-standing assumptions, shallow grass root distributions absorbed 32% less water than slightly deeper tree root distributions when grasses and trees were assumed to have equal water demands. Quantifying water uptake revealed deeper soil water uptake, greater niche partitioning and greater benefits of deep roots than would be estimated from root biomass or tracer uptake data alone. PMID:26633177

Radium and uranium levels in vegetables grown using different farming management systems.

PubMed

Lauria, D C; Ribeiro, F C A; Conti, C C; Loureiro, F A

2009-02-01

Vegetables grown with phosphate fertilizer (conventional management), with bovine manure fertilization (organic management) and in a mineral nutrient solution (hydroponic) were analyzed and the concentrations of (238)U, (226)Ra and (228)Ra in lettuce, carrots, and beans were compared. Lettuce from hydroponic farming system showed the lowest concentration of radionuclides 0.51 for (226)Ra, 0.55 for (228)Ra and 0.24 for (238)U (Bq kg(-1) dry). Vegetables from organically and conventionally grown farming systems showed no differences in the concentration of radium and uranium. Relationships between uranium content in plants and exchangeable Ca and Mg in soil were found, whereas Ra in vegetables was inversely correlated to the cation exchange capacity of soil, leading to the assumption that by supplying carbonate and cations to soil, liming may cause an increase of U and a decrease of radium uptake by plants. The soil to plant transfer varied from 10(-4) to 10(-2) for (238)U and from 10(-2) to 10(-1) for (228)Ra.

Incorporating availability/bioavailability in risk assessment and decision making of polluted sites, using Germany as an example.

PubMed

Kördel, Werner; Bernhardt, Cornelia; Derz, Kerstin; Hund-Rinke, Kerstin; Harmsen, Joop; Peijnenburg, Willie; Comans, Rob; Terytze, Konstantin

2013-10-15

Nearly all publications dealing with availability or bioavailability of soil pollutants start with the following statement: the determination of total pollutant content will lead to an over-estimation of risk. However, an assessment of contaminated sites should be based on the determination of mobile fractions of pollutants, and the fractions with potential for mobilisation that threaten groundwater and surface water, and the actual and potential fractions available for uptake by plants, soil microflora and soil organisms. After reviewing the literature for method proposals concerning the determination of available/bioavailable fractions of contaminants with respect to leaching, plants, microorganisms (biodegradation) and soil organisms, we propose a testing and assessment scheme for contaminated sites. The proposal includes (i) already accepted and used methods, (ii) methods which are under standardisation, and (iii) methods for which development has just started in order to promote urgently needed research. Copyright © 2013 Elsevier B.V. All rights reserved.

Effects of nitrogen and phosphorus additions on soil methane uptake in disturbed forests

NASA Astrophysics Data System (ADS)

Zheng, Mianhai; Zhang, Tao; Liu, Lei; Zhang, Wei; Lu, Xiankai; Mo, Jiangming

2016-12-01

Atmospheric nitrogen (N) deposition is generally thought to suppress soil methane (CH4) uptake in natural forests, and phosphorus (P) input may alleviate this negative effect. However, it remains unclear how N and P inputs control soil CH4 uptake in disturbed forests. In this study, soil CH4 uptake rates were measured in two disturbed forests, including a secondary forest (with previous, but not recent, disturbance) and a plantation forest (with recent continuous disturbance), in southern China for 34 months of N and/or P additions: control, N addition (150 kg N ha-1 yr-1), P addition (150 kg P ha-1 yr-1), and NP addition (150 kg N ha-1 yr-1 plus 150 kg P ha-1 yr-1). Mean CH4 uptake rate in control plots was significantly higher in the secondary forest (24.40 ± 0.81 µg CH4-C m-2 h-1) than in the plantation forest (17.07 ± 0.70 µg CH4-C m-2 h-1). CH4 uptake rate had negative relationships with soil water-filled pore space in both forests. In the secondary forest, N, P, and NP additions significantly decreased CH4 uptake by 39.7%, 27.8%, and 37.6%, respectively, but had no significant effects in the plantation forest, indicating that P input does not alleviate the suppression of CH4 uptake by N deposition. Taken together, our findings suggest that reducing anthropogenic disturbance, including harvesting of forest floor, and anthropogenic N and P inputs will increase soil CH4 uptake in disturbed forests, which is important in view of the increased trends in global warming during recent decades.

Rapid Consumption of Low Concentrations of Methyl Bromide by Soil Bacteria

PubMed Central

Hines, Mark E.; Crill, Patrick M.; Varner, Ruth K.; Talbot, Robert W.; Shorter, Joanne H.; Kolb, Charles E.; Harriss, Robert C.

1998-01-01

A dynamic dilution system for producing low mixing ratios of methyl bromide (MeBr) and a sensitive analytical technique were used to study the uptake of MeBr by various soils. MeBr was removed within minutes from vials incubated with soils and ∼10 parts per billion by volume of MeBr. Killed controls did not consume MeBr, and a mixture of the broad-spectrum antibiotics chloramphenicol and tetracycline inhibited MeBr uptake by 98%, indicating that all of the uptake of MeBr was biological and by bacteria. Temperature optima for MeBr uptake suggested a biological sink, yet soil moisture and temperature optima varied for different soils, implying that MeBr consumption activity by soil bacteria is diverse. The eucaryotic antibiotic cycloheximide had no effect on MeBr uptake, indicating that soil fungi were not involved in MeBr removal. MeBr consumption did not occur anaerobically. A dynamic flowthrough vial system was used to incubate soils at MeBr mixing ratios as low as those found in the remote atmosphere (5 to 15 parts per trillion by volume [pptv]). Soils consumed MeBr at all mixing ratios tested. Temperate forest and grassy lawn soils consumed MeBr most rapidly (rate constant [k] = 0.5 min−1), yet sandy temperate, boreal, and tropical forest soils also readily consumed MeBr. Amendments of CH4 up to 5% had no effect on MeBr uptake even at CH4:MeBr ratios of 107, and depth profiles of MeBr and CH4 consumption exhibited very different vertical rate optima, suggesting that methanotrophic bacteria, like those presently in culture, do not utilize MeBr when it is at atmospheric mixing ratios. Data acquired with gas flux chambers in the field demonstrated the very rapid in situ consumption of MeBr by soils. Uptake of MeBr at mixing ratios found in the remote atmosphere occurs via aerobic bacterial activity, displays first-order kinetics at mixing ratios from 5 pptv to ∼1 part per million per volume, and is rapid enough to account for 25% of the global annual loss of atmospheric MeBr. PMID:9572964

Uptake of 137Cs by Leafy Vegetables and Grains from Calcareous Soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robison, W; Hamilton, T; Conrado, C

2004-04-19

Cesium-137 was deposited on Bikini Island at Bikini Atoll in 1954 as a result of nuclear testing and has been transported and cycled in the ecosystem ever since. Atoll soils are of marine origin and are almost pure CaCO{sub 3} with high concentrations of organic matter in the top 40 cm. Data from previous experiments with mature fruit trees show very high transfer factors (TF's), [Bq g{sup -1} plant/ Bq g{sup -1} soil, both in dry weight] into fruits from atoll calcareous soil. These TF's are much higher than reported for continental, silica-based soils. In this report TF's for 5more » types of leafy vegetable crops and 2 types of grain crops are provided for use in predictive dose assessments and for comparison with other data from other investigators working with other types of soil in the IAEA CRP ''The Classification of Soil Systems on the Basis of Transfer Factors of Radionuclides from Soil to Reference Plants''. Transfer factors for plants grown on calcareous soil are again very high relative to clay-containing soils and range from 23 to 39 for grain crops and 21 to 113 for leafy vegetables. Results from these experiments, in this unique, high pH, high organic content, low potassium (K) soil, provide a boundary condition for models relating soil properties to TF.« less

Can ligand addition to soil enhance Cd phytoextraction? A mechanistic model study.

PubMed

Lin, Zhongbing; Schneider, André; Nguyen, Christophe; Sterckeman, Thibault

2014-11-01

Phytoextraction is a potential method for cleaning Cd-polluted soils. Ligand addition to soil is expected to enhance Cd phytoextraction. However, experimental results show that this addition has contradictory effects on plant Cd uptake. A mechanistic model simulating the reaction kinetics (adsorption on solid phase, complexation in solution), transport (convection, diffusion) and root absorption (symplastic, apoplastic) of Cd and its complexes in soil was developed. This was used to calculate plant Cd uptake with and without ligand addition in a great number of combinations of soil, ligand and plant characteristics, varying the parameters within defined domains. Ligand addition generally strongly reduced hydrated Cd (Cd(2+)) concentration in soil solution through Cd complexation. Dissociation of Cd complex ([Formula: see text]) could not compensate for this reduction, which greatly lowered Cd(2+) symplastic uptake by roots. The apoplastic uptake of [Formula: see text] was not sufficient to compensate for the decrease in symplastic uptake. This explained why in the majority of the cases, ligand addition resulted in the reduction of the simulated Cd phytoextraction. A few results showed an enhanced phytoextraction in very particular conditions (strong plant transpiration with high apoplastic Cd uptake capacity), but this enhancement was very limited, making chelant-enhanced phytoextraction poorly efficient for Cd.

Carbonyl sulfide exchange in soils for better estimates of ecosystem carbon uptake

DOE PAGES

Whelan, Mary E.; Hilton, Timothy W.; Berry, Joseph A.; ...

2016-03-21

Carbonyl sulfide (COS) measurements are one of the emerging tools to better quantify gross primary production (GPP), the largest flux in the global carbon cycle. COS is a gas with a similar structure to CO 2; COS uptake is thought to be a proxy for GPP. However, soils are a potential source or sink of COS. This study presents a framework for understanding soil–COS interactions. Excluding wetlands, most of the few observations of isolated soils that have been made show small uptake of atmospheric COS. Recently, a series of studies at an agricultural site in the central United States foundmore » soil COS production under hot conditions an order of magnitude greater than fluxes at other sites. To investigate the extent of this phenomenon, soils were collected from five new sites and incubated in a variety of soil moisture and temperature states. We found that soils from a desert, an oak savannah, a deciduous forest, and a rainforest exhibited small COS fluxes, behavior resembling previous studies. However, soil from an agricultural site in Illinois, >800 km away from the initial central US study site, demonstrated comparably large soil fluxes under similar conditions. These new data suggest that, for the most part, soil COS interaction is negligible compared to plant uptake of COS. We present a model that anticipates the large agricultural soil fluxes so that they may be taken into account. Furthermore, while COS air-monitoring data are consistent with the dominance of plant uptake, improved interpretation of these data should incorporate the soil flux parameterizations suggested here.« less

Carbon Storage Patterns of Caragana korshinskii in Areas of Reduced Environmental Moisture on the Loess Plateau, China.

PubMed

Gong, Chunmei; Bai, Juan; Wang, Junhui; Zhou, Yulu; Kang, Tai; Wang, Jiajia; Hu, Congxia; Guo, Hongbo; Chen, Peilei; Xie, Pei; Li, Yuanfeng

2016-07-14

Precipitation patterns are influenced by climate change and profoundly alter the carbon sequestration potential of ecosystems. Carbon uptake by shrubbery alone accounts for approximately one-third of the total carbon sink; however, whether such uptake is altered by reduced precipitation is unclear. In this study, five experimental sites characterised by gradual reductions in precipitation from south to north across the Loess Plateau were used to evaluate the Caragana korshinskii's functional and physiological features, particularly its carbon fixation capacity, as well as the relationships among these features. We found the improved net CO2 assimilation rates and inhibited transpiration at the north leaf were caused by lower canopy stomatal conductance, which enhanced the instantaneous water use efficiency and promoted plant biomass as well as carbon accumulation. Regional-scale precipitation reductions over a certain range triggered a distinct increase in the shrub's organic carbon storage with an inevitable decrease in the soil's organic carbon storage. Our results confirm C. korshinskii is the optimal dominant species for the reconstruction of fragile dryland ecosystems. The patterns of organic carbon storage associated with this shrub occurred mostly in the soil at wetter sites, and in the branches and leaves at drier sites across the arid and semi-arid region.

CONVERGING PATTERNS OF UPTAKE AND HYDRAULIC REDISTRIBUTION OF SOIL WATER IN CONTRASTING WOODY VEGETATION TYPES

EPA Science Inventory

We used concurrent measurements of soil water content and soil water potential (Ysoil) to assess the effects of Ysoil on uptake and hydraulic redistribution (HR) of soil water by roots during seasonal drought cycles in six sites characterized by different types and amounts of woo...

Response of rice genotype to straighthead disease as influenced by arsenic level and water management practices in soil.

PubMed

Hua, Bin; Yan, Wengui; Yang, John

2013-01-01

Arsenic (As) uptake by rice plants and the straighthead disease induced by As-based herbicide are of environmental concerns. Bioavailability or mobility of inorganic As in soil has been reported to be significantly influenced by soil minerals such as iron (hydr) oxide; however, the interactions of organic As such as monosodium methanearsonate (MSMA) with soil minerals are little studied, thus largely unknown. In an effort to minimize the As uptake by rice and determine rice cultivar response to soil MSMA level, a field experiment was conducted on three rice cultivars grown in both MSMA-treated and -untreated soils under continuous or intermittent flood water management practices. Results indicated that the grain yield and the occurrence of straighthead disease were cultivar-dependent and influenced by soil As level and water management practices. Straighthead-resistant cultivars yielded more and had lower grain As than the susceptible ones. Elevated soil As with continuous flood management significantly reduced the grain yield of susceptible cultivars by >89% due to substantially increased straighthead, which were induced by increased As content in grains. Yield reduction by MSMA treatment could be partially mitigated with intermittent flood water practice. The As accumulation was found to be associated with soil iron redox transformation influenced by the water management. This study demonstrates that the selection of less As-susceptible cultivars and intermittent flood water practice could be effective means to lower the As accumulation in grains and minimize the occurrence of the As-induced straighthead symptom and yield reduction. Copyright © 2012 Elsevier B.V. All rights reserved.

Drivers of atmospheric methane uptake by montane forest soils in the southern Peruvian Andes

NASA Astrophysics Data System (ADS)

Jones, Sam P.; Diem, Torsten; Huaraca Quispe, Lidia P.; Cahuana, Adan J.; Reay, Dave S.; Meir, Patrick; Arn Teh, Yit

2016-07-01

The soils of tropical montane forests can act as sources or sinks of atmospheric methane (CH4). Understanding this activity is important in regional atmospheric CH4 budgets given that these ecosystems account for substantial portions of the landscape in mountainous areas like the Andes. We investigated the drivers of net CH4 fluxes from premontane, lower and upper montane forests, experiencing a seasonal climate, in south-eastern Peru. Between February 2011 and June 2013, these soils all functioned as net sinks for atmospheric CH4. Mean (standard error) net CH4 fluxes for the dry and wet season were -1.6 (0.1) and -1.1 (0.1) mg CH4-C m-2 d-1 in the upper montane forest, -1.1 (0.1) and -1.0 (0.1) mg CH4-C m-2 d-1 in the lower montane forest, and -0.2 (0.1) and -0.1 (0.1) mg CH4-C m-2 d-1 in the premontane forest. Seasonality in CH4 exchange varied among forest types with increased dry season CH4 uptake only apparent in the upper montane forest. Variation across these forests was best explained by available nitrate and water-filled pore space indicating that nitrate inhibition of oxidation or diffusional constraints imposed by changes in water-filled pore space on methanotrophic communities may represent important controls on soil-atmosphere CH4 exchange. Net CH4 flux was inversely related to elevation; a pattern that differs to that observed in Ecuador, the only other extant study site of soil-atmosphere CH4 exchange in the tropical Andes. This may result from differences in rainfall patterns between the regions, suggesting that attention should be paid to the role of rainfall and soil moisture dynamics in modulating CH4 uptake by the organic-rich soils typical of high-elevation tropical forests.

The soil microbial community composition and soil microbial carbon uptake are more affected by soil type than by different vegetation types (C3 and C4 plants) and seasonal changes

NASA Astrophysics Data System (ADS)

Griselle Mellado Vazquez, Perla; Lange, Markus; Gleixner, Gerd

2016-04-01

This study investigates the influence of different vegetation types (C3 and C4 plants), soil type and seasonal changes on the soil microbial biomass, soil microbial community composition and soil microbial carbon (C) uptake. We collected soil samples in winter (non-growing season) and summer (growing season) in 2012 from an experimental site cropping C3 and C4 plants for 6 years on two different soil types (sandy and clayey). The amount of phospholipid fatty acids (PLFAs) and their compound-specific δ13C values were used to determined microbial biomass and the flow of C from plants to soil microorganisms, respectively. Higher microbial biomass was found in the growing season. The microbial community composition was mainly explained by soil type. Higher amounts of SOC were driving the predominance of G+ bacteria, actinobacteria and cyclic G- bacteria in sandy soils, whereas root biomass was significantly related to the increased proportions of G- bacteria in clayey soils. Plant-derived C in G- bacteria increased significantly in clayey soils in the growing season. This increase was positively and significantly driven by root biomass. Moreover, changes in plant-derived C among microbial groups pointed to specific capabilities of different microbial groups to decompose distinct sources of C. We concluded that soil texture and favorable growth conditions driven by rhizosphere interactions are the most important factors controlling the soil microbial community. Our results demonstrate that a change of C3 plants vs. C4 plants has only a minor effect on the soil microbial community. Thus, such experiments are well suited to investigate soil organic matter dynamics as they allow to trace the C flow from plants into the soil microbial community without changing the community abundance and composition.

A hydrological tracer study of water uptake depth in a Scots pine forest under two different water regimes.

PubMed

Plamboeck, A H; Grip, H; Nygren, U

1999-05-01

Little is known about the vertical distribution of water uptake by trees under different water supply regimes, the subject of this study, conducted in a Scots pine stand on sandy loam in northern Sweden. The objective was to determine the water uptake distribution in pines under two different water regimes, desiccation (no precipitation) and irrigation (2 mm day -1 in July and 1 mm day -1 in August), and to relate the uptake to water content, root and soil texture distributions. The natural 18 O gradient in soil water was exploited, in combination with two added tracers, 2 H at 10 cm and 3 H at 20 cm depth. Extraction of xylem sap and water from the soil profile then enabled evaluation of relative water uptake from four different soil depths (humus layer, 0-10, 10-25 and 25-55 cm) in each of two 50-m 2 plots per treatment. In addition, water content, root biomass and soil texture were determined. There were differences in vertical water uptake distribution between treatments. In July, the pines at the irrigated and desiccated plots took up 50% and 30%, respectively, of their water from the upper layers, down to 25 cm depth. In August, the pines on the irrigated plots took up a greater proportion of their water from layers below 25 cm deep than they did in July. In a linear regression, the mean hydraulic conductivity for each mineral soil horizon explained a large part of the variation in relative water uptake. No systematic variation in the residual water uptake correlated to the root distribution. It was therefore concluded that the distribution of water uptake by the pines at Åheden was not a function of root density in the mineral soil, but was largely determined by the unsaturated hydraulic conductivity.

Phosphorus in global agricultural soils: spatially explicit modelling of soil phosphorus and crop uptake for 1900 to 2010

NASA Astrophysics Data System (ADS)

Zhang, J.; Beusen, A.; Bouwman, L.; Apeldoorn, D. V.; Yu, C.

2016-12-01

Phosphorus (P) plays a vital role in global crop production and food security. To explore the global P status of soils, in this study we developed a spatially explicit version of a two-pool dynamic soil P model at 0.5°resolution. With this model, we analyzed the historical changes of soil P inputs (including manure and inorganic P fertilizer) from 1900 to 2010, reproduced the historical crop P uptake, calculated the phosphorus use efficiency (PUE) and conducted a comprehensive inventory of soil P pools and P budgets (deficit and surplus) in global soils under croplands. Our results suggest that the spatially explicit model is capable of simulating the long-term soil P budget changes and crop uptake, with model simulations closely matching historical P uptake for cropland in all countries. The global P inputs from fertilizers and manure increased from 2 Tg P in 1900 to 23 Tg P in 2010 with great variation across different regions and countries of the world. The magnitude of crop uptake has also changed rapidly over the 20th century: according to our model, crop P uptake per hectare in Western Europe increased by more than three times while the total soil P stock per hectare increased by close to 37% due to long-term P surplus application, with a slight decrease in recent years. Croplands in China (total P per hectare slight decline during 1900-1970, +34% since 1970) and India (total P per hectare gradual increase by 14% since 1900, 6% since 1970) are currently in the phase of accumulation.The total soil P content per hectare in Sub-Saharan Africa has slightly decreased since 1900.Our model is a promising tool to analyze the changes in the soil P status and the capacity of soils to supply P to crops, including future projections of required nutrient inputs.

Behavior of technetium-99 in soils and plants. Final report, April 1, 1974--December 31, 1978

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gast, R.G.; Landa, E.R.; Thorvig, L.J.

Studies described in this report were aimed at establishing the magnitude and mechanisms of /sup 99/Tc sorption by soils and uptake by plants. Results show that /sup 99/Tc was sorbed from solution over a period to two to five weeks by 8 of 11 soils studies. The slow rate of sorption, the lack of sorption by low organic matter soils, the elimination of sorption following sterilization and increased sorption following addition of dextrose all point to a microbial role in the sorption process. However, it has not been established whether this is a direct or indirect role nor is itmore » possible to clearly predict the conditions under which sorption will occur. Results of plant uptake studies show that /sup 99/Tc can be taken up and translocated into the photosynthetic tissue of higher plants with concentrations in seeds being much less than in vegetative tissue. Technetium-99 was also shown to be toxic to plants at low concentrations and evidence suggests that this is a chemically rather than radiologically induced toxicity. However, this remains to be completely resolved as well as whether there is a threshold level of /sup 99/Tc required before toxicity occurs. Studies of short-term, dynamic, aerobic systems indicated that /sup 99/Tc moves through the soil as a relatively large anion exhibiting characteristic miscible displacement with some asymmetric tailing. /sup 99/Tc exhibits greater retention that C1/sup -/, which may be attributed statistically to weak complexion by organic matter. It is unlikely that this retention phenomenon is related to the static sorption activity reported in the first part of this study.« less

Breeding crops for improved mineral nutrition under climate change conditions.

PubMed

Pilbeam, David J

2015-06-01

Improvements in understanding how climate change may influence chemical and physical processes in soils, how this may affect nutrient availability, and how plants may respond to changed availability of nutrients will influence crop breeding programmes. The effects of increased atmospheric CO2 and warmer temperatures, both individually and combined, on soil microbial activity, including mycorrhizas and N-fixing organisms, are evaluated, together with their implications for nutrient availability. Potential changes to plant growth, and the combined effects of soil and plant changes on nutrient uptake, are discussed. The organization of research on the efficient use of macro- and micronutrients by crops under climate change conditions is outlined, including analysis of QTLs for nutrient efficiency. Suggestions for how the information gained can be used in plant breeding programmes are given. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Depth of soil water uptake by tropical rainforest trees during dry periods: does tree dimension matter?

PubMed

Stahl, Clément; Hérault, Bruno; Rossi, Vivien; Burban, Benoit; Bréchet, Claude; Bonal, Damien

2013-12-01

Though the root biomass of tropical rainforest trees is concentrated in the upper soil layers, soil water uptake by deep roots has been shown to contribute to tree transpiration. A precise evaluation of the relationship between tree dimensions and depth of water uptake would be useful in tree-based modelling approaches designed to anticipate the response of tropical rainforest ecosystems to future changes in environmental conditions. We used an innovative dual-isotope labelling approach (deuterium in surface soil and oxygen at 120-cm depth) coupled with a modelling approach to investigate the role of tree dimensions in soil water uptake in a tropical rainforest exposed to seasonal drought. We studied 65 trees of varying diameter and height and with a wide range of predawn leaf water potential (Ψpd) values. We confirmed that about half of the studied trees relied on soil water below 100-cm depth during dry periods. Ψpd was negatively correlated with depth of water extraction and can be taken as a rough proxy of this depth. Some trees showed considerable plasticity in their depth of water uptake, exhibiting an efficient adaptive strategy for water and nutrient resource acquisition. We did not find a strong relationship between tree dimensions and depth of water uptake. While tall trees preferentially extract water from layers below 100-cm depth, shorter trees show broad variations in mean depth of water uptake. This precludes the use of tree dimensions to parameterize functional models.

Siderophore production and facilitated uptake of iron plutonium in p. putida.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boukhalfa, H.; Lack, J. G.; Reilly, S. D.

2003-01-01

Bioremediation is a very attractive alternative for restoration of contaminated soil and ground water . This is particularly true for radionuclide contamination, which tends to be low in concentration and distributed over large surface areas . Microorganisms, through their natural metabolism, produce a large variety of organic molecules of different size and functionality . These molecules interact with contaminants present in the microbe's environment . Through these interactions bio-molecules can solubilize, oxidize, reduce or precipitate major metal contaminant in soils and ground water . We are studying these interaction for actinides and common soil subsurface bacteria . One focus hasmore » been on siderophores, small molecules that have great affinity for hard metal ions, and their potential to affect the distribution and mobility of actinide contaminants . The metal siderophores assembly can be recognized and taken up by micro-organisms through their interference with their iron uptake system . The first step in the active iron transport consists of Fe(III)-siderophore recognition by membrane receptors, which requires specific stereo orientation of the Fe(III)-siderophore complex . Recent investigations have shown that siderophores can form strong complexes with a large variety of toxic metals and may mediate their introduction inside the cell . We have previously shown that a Puhydroxamate siderophore assembly is recognized and taken up by the Microbacterium flavescens (JG-9). However, it is not clear if Pu-siderophore assemblies of other siderophores are also recognized.« less

Toxicity and uptake of cyclic nitramine explosives in ryegrass Lolium perenne.

PubMed

Rocheleau, Sylvie; Lachance, Bernard; Kuperman, Roman G; Hawari, Jalal; Thiboutot, Sonia; Ampleman, Guy; Sunahara, Geoffrey I

2008-11-01

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX), and 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane (CL-20) are cyclic nitramines used as explosives. Their ecotoxicities have been characterized incompletely and little is known about their accumulation potential in soil organisms. We assessed the toxicity and uptake of these explosives in perennial ryegrass Lolium perenne L. exposed in a Sassafras sandy loam (SSL) or in a sandy soil (DRDC, CL-20 only) containing contrasting clay contents (11% and 0.3%, respectively). A 21-d exposure to RDX, HMX or CL-20 in either soil had no adverse effects on ryegrass growth. RDX and HMX were translocated to ryegrass shoots, with bioconcentration factors (BCF) of up to 15 and 11, respectively. In contrast, CL-20 was taken up by the roots (BCF up to 19) with no translocation to the shoots. These studies showed that RDX, HMX, and CL-20 can accumulate in plants and may potentially pose a risk of biomagnification across the food chain.

Feedbacks between soil penetration resistance, root architecture and water uptake limit water accessibility and crop growth - A vicious circle.

PubMed

Colombi, Tino; Torres, Lorena Chagas; Walter, Achim; Keller, Thomas

2018-06-01

Water is the most limiting resource for global crop production. The projected increase of dry spells due to climate change will further increase the problem of water limited crop yields. Besides low water abundance and availability, water limitations also occur due to restricted water accessibility. Soil penetration resistance, which is largely influenced by soil moisture, is the major soil property regulating root elongation and water accessibility. Until now the interactions between soil penetration resistance, root system properties, water uptake and crop productivity are rarely investigated. In the current study we quantified how interactive effects between soil penetration resistance, root architecture and water uptake affect water accessibility and crop productivity in the field. Maize was grown on compacted and uncompacted soil that was either tilled or remained untilled after compaction, which resulted in four treatments with different topsoil penetration resistance. Higher topsoil penetration resistance caused root systems to be shallower. This resulted in increased water uptake from the topsoil and hence topsoil drying, which further increased the penetration resistance in the uppermost soil layer. As a consequence of this feedback, root growth into deeper soil layers, where water would have been available, was reduced and plant growth decreased. Our results demonstrate that soil penetration resistance, root architecture and water uptake are closely interrelated and thereby determine the potential of plants to access soil water pools. Hence, these interactions and their feedbacks on water accessibility and crop productivity have to be accounted for when developing strategies to alleviate water limitations in cropping systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil

PubMed Central

Lehtovirta-Morley, Laura E.; Stoecker, Kilian; Vilcinskas, Andreas; Prosser, James I.; Nicol, Graeme W.

2011-01-01

Nitrification is a fundamental component of the global nitrogen cycle and leads to significant fertilizer loss and atmospheric and groundwater pollution. Nitrification rates in acidic soils (pH < 5.5), which comprise 30% of the world's soils, equal or exceed those of neutral soils. Paradoxically, autotrophic ammonia oxidizing bacteria and archaea, which perform the first stage in nitrification, demonstrate little or no growth in suspended liquid culture below pH 6.5, at which ammonia availability is reduced by ionization. Here we report the discovery and cultivation of a chemolithotrophic, obligately acidophilic thaumarchaeal ammonia oxidizer, “Candidatus Nitrosotalea devanaterra,” from an acidic agricultural soil. Phylogenetic analysis places the organism within a previously uncultivated thaumarchaeal lineage that has been observed in acidic soils. Growth of the organism is optimal in the pH range 4 to 5 and is restricted to the pH range 4 to 5.5, unlike all previously cultivated ammonia oxidizers. Growth of this organism and associated ammonia oxidation and autotrophy also occur during nitrification in soil at pH 4.5. The discovery of Nitrosotalea devanaterra provides a previously unsuspected explanation for high rates of nitrification in acidic soils, and confirms the vital role that thaumarchaea play in terrestrial nitrogen cycling. Growth at extremely low ammonia concentration (0.18 nM) also challenges accepted views on ammonia uptake and metabolism and indicates novel mechanisms for ammonia oxidation at low pH. PMID:21896746

Linking activity, composition and seasonal dynamics of atmospheric methane oxidizers in a meadow soil

PubMed Central

Shrestha, Pravin Malla; Kammann, Claudia; Lenhart, Katharina; Dam, Bomba; Liesack, Werner

2012-01-01

Microbial oxidation is the only biological sink for atmospheric methane. We assessed seasonal changes in atmospheric methane oxidation and the underlying methanotrophic communities in grassland near Giessen (Germany), along a soil moisture gradient. Soil samples were taken from the surface layer (0–10 cm) of three sites in August 2007, November 2007, February 2008 and May 2008. The sites showed seasonal differences in hydrological parameters. Net uptake rates varied seasonally between 0 and 70 μg CH4 m−2 h−1. Greatest uptake rates coincided with lowest soil moisture in spring and summer. Over all sites and seasons, the methanotrophic communities were dominated by uncultivated methanotrophs. These formed a monophyletic cluster defined by the RA14, MHP and JR1 clades, referred to as upland soil cluster alphaproteobacteria (USCα)-like group. The copy numbers of pmoA genes ranged between 3.8 × 105–1.9 × 106 copies g−1 of soil. Temperature was positively correlated with CH4 uptake rates (P<0.001), but had no effect on methanotrophic population dynamics. The soil moisture was negatively correlated with CH4 uptake rates (P<0.001), but showed a positive correlation with changes in USCα-like diversity (P<0.001) and pmoA gene abundance (P<0.05). These were greatest at low net CH4 uptake rates during winter times and coincided with an overall increase in bacterial 16S rRNA gene abundances (P<0.05). Taken together, soil moisture had a significant but opposed effect on CH4 uptake rates and methanotrophic population dynamics, the latter being increasingly stimulated by soil moisture contents >50 vol% and primarily related to members of the MHP clade. PMID:22189499

Linking activity, composition and seasonal dynamics of atmospheric methane oxidizers in a meadow soil.

PubMed

Shrestha, Pravin Malla; Kammann, Claudia; Lenhart, Katharina; Dam, Bomba; Liesack, Werner

2012-06-01

Microbial oxidation is the only biological sink for atmospheric methane. We assessed seasonal changes in atmospheric methane oxidation and the underlying methanotrophic communities in grassland near Giessen (Germany), along a soil moisture gradient. Soil samples were taken from the surface layer (0-10 cm) of three sites in August 2007, November 2007, February 2008 and May 2008. The sites showed seasonal differences in hydrological parameters. Net uptake rates varied seasonally between 0 and 70 μg CH(4) m(-2) h(-1). Greatest uptake rates coincided with lowest soil moisture in spring and summer. Over all sites and seasons, the methanotrophic communities were dominated by uncultivated methanotrophs. These formed a monophyletic cluster defined by the RA14, MHP and JR1 clades, referred to as upland soil cluster alphaproteobacteria (USCα)-like group. The copy numbers of pmoA genes ranged between 3.8 × 10(5)-1.9 × 10(6) copies g(-1) of soil. Temperature was positively correlated with CH(4) uptake rates (P<0.001), but had no effect on methanotrophic population dynamics. The soil moisture was negatively correlated with CH(4) uptake rates (P<0.001), but showed a positive correlation with changes in USCα-like diversity (P<0.001) and pmoA gene abundance (P<0.05). These were greatest at low net CH(4) uptake rates during winter times and coincided with an overall increase in bacterial 16S rRNA gene abundances (P<0.05). Taken together, soil moisture had a significant but opposed effect on CH(4) uptake rates and methanotrophic population dynamics, the latter being increasingly stimulated by soil moisture contents >50 vol% and primarily related to members of the MHP clade.

Increased Phosphorus Uptake by Wheat and Field Beans Inoculated with a Phosphorus-Solubilizing Penicillium bilaji Strain and with Vesicular-Arbuscular Mycorrhizal Fungi.

PubMed

Kucey, R M

1987-12-01

Greenhouse and field experiments were conducted to test the effect of a P-solubilizing isolate of Penicillium bilaji on the availability of Idaho rock phosphate (RP) in a calcareous soil. Under controlled greenhouse conditions, inoculation of soils with P. bilaji along with RP at 45 mug of P per g of soil resulted in plant dry matter production and P uptake by wheat (Triticum aestivum) and beans (Phaseolus vulgaris) that were not significantly different from the increases in dry matter production and P uptake caused by the addition of 15 mug of P per g of soil as triple superphosphate. Addition of RP alone had no effect on plant growth. Addition of vesicular-arbuscular mycorrhizal fungi was necessary for maximum effect in the sterilized soil in the greenhouse experiment. Under field conditions, a treatment consisting of RP (20 kg of P per ha of soil) plus P. bilaji plus straw resulted in wheat yields and P uptake equivalent to increases due to the addition of monoammonium phosphate added at an equivalent rate of P. RP added alone had no effect on wheat growth or P uptake. The results indicate that a biological system of RP solubilization can be used to increase the availability of RP added to calcareous soils.

An exploration of the relationship between adsorption and bioavailability of pesticides in soil to earthworm.

PubMed

Yu, Yun Long; Wu, Xiao Mao; Li, Shao Nan; Fang, Hua; Zhan, Hai Yan; Yu, Jing Quan

2006-06-01

A study was conducted to determine the adsorption/desorption of butachlor, myclobutanil and chlorpyrifos on five soils using a batch equilibration technique and to study the relationship between bioavailability to Allolobophora caliginosa and the adsorption/desorption of these three pesticides. The results showed that the adsorption/desorption processes of the tested compounds were mainly controlled by soil organic matter content (OM) and octanol/water-partitioning coefficient (K(ow)), and that the bioavailability of the pesticides was dependent on characteristics of pesticides, properties of soils, and uptake routes of earthworms. Bioconcentration of butachlor and myclobutanil was negatively correlated with Freundlich adsorption constant K(af) and K(df). However, only a slightly positive correlation between bioconcentration and K(af) and K(df) was observed for chlorpyrifos due to its high affinity onto soil.

Tree specific traits vs. stand level characteristics - assessing the source depths of plant water uptake in a mixed forest stand

NASA Astrophysics Data System (ADS)

Seeger, Stefan; Brinkmann, Nadine; Kahmen, Ansgar; Weiler, Markus

2017-04-01

Due to differences in fine root distributions, physiological root characteristics and plant plasticity, the spatial and temporal characteristics of plant water uptake are expected to vary between different tree species. This has implications on the overall water budget of a forest stand as well as on the drought sensitivity of particular trees. A four-year time series of climate data, soil moisture, and stable water isotopes in soil and tree xylem was used to investigate plant water uptake dynamics of four tree species (beech - Fagus sylvatica, spruce - Picea abies, ash - Fraxinus excelsior and maple - Acer pseudoplatanus) in a mixed forest stand. Modeling with a modified version of the soil hydrological model Hydrus-1D allowed us to simulate continuous time series of stable water isotopes in plant water uptake, which were compared to the measured values in tree xylem water and soil water. We found that different estimated species specific fine root distributions and root water uptake parameters lead to very similar simulated water balances and soil water isotope depth profiles for all four species. According to our simulations, differences in evaporative demand (i.e. LAI) had the biggest influence on water uptake and soil water distributions. Comparing the isotopic signatures of simulated root water uptake and measured xylem water, the simulations for beech were most suited to predict the observed signatures of all four species. This indicates that isolated, tree specific parametrized 1-D simulations are not suited to predict actual water uptake of different trees in a mixed stand. Due to overlapping root spaces dominant trees (in our case beeches with an LAI of around 5.5) may influence the soil water storage below accompanying trees (spruces, ashes and maples with LAIs between 1.8 and 3.1) in a degree that their actual water uptake cannot be predicted with 1-D simulations based on their smaller LAI values. Consequently, for a mixed forest stand the interplay of trees with different traits has to be accounted for in order to correctly model plant water uptake of single trees.

[Effects of organic-inorganic mixed fertilizers on rice yield and nitrogen use efficiency].

PubMed

Zhang, Xiao-li; Meng, Lin; Wang, Qiu-jun; Luo, Jia; Huang, Qi-wei; Xu, Yang-chun; Yang, Xing-ming; Shen, Qi-rong

2009-03-01

A field experiment was carried to study the effects of organic-inorganic mixed fertilizers on rice yield, nitrogen (N) use efficiency, soil N supply, and soil microbial diversity. Rapeseed cake compost (RCC), pig manure compost (PMC), and Chinese medicine residue compost (MRC) were mixed with chemical N, P and K fertilizers. All the treatments except CK received the same rate of N. The results showed that all N fertilizer application treatments had higher rice yield (7918.8-9449.2 kg x hm(-2)) than the control (6947.9 kg x hm(-2)). Compared with that of chemical fertilizers (CF) treatment (7918.8 kg x hm(-2)), the yield of the three organic-inorganic mixed fertilizers treatments ranged in 8532.0-9449.2 kg x hm(-2), and the increment was 7.7%-19.3%. Compared with treatment CF, the treatments of organic-inorganic mixed fertilizers were significantly higher in N accumulation, N transportation efficiency, N recovery rate, agronomic N use efficiency, and physiological N use efficiency. These mixed fertilizers treatments promoted rice N uptake and improved soil N supply, and thus, increased N use efficiency, compared with treatments CF and CK. Neighbor joining analysis indicated that soil bacterial communities in the five treatments could be classified into three categories, i.e., CF and CK, PMC and MRC, and RCC, implying that the application of exogenous organic materials could affect soil bacterial communities, while applying chemical fertilizers had little effect on them.

Effects of glucose on the uptake and metabolism of glycine in pakchoi (Brassica chinensis L.) exposed to various nitrogen sources.

PubMed

Ma, Qingxu; Cao, Xiaochuang; Xie, Yinan; Xiao, Han; Tan, Xiaoli; Wu, Lianghuan

2017-03-02

Plants can absorb amino acids as a nitrogen (N) source, and glucose is an important part of root rhizodeposition and the soil sugar pool, which participates in the regulation of plant growth and uptake. In pakchoi, the effect of glucose concentration on the glycine N uptake from a nutrient mixture composed of glycine, ammonium, and nitrate, or from a single N solution of glycine alone was studied using specific substrate 15 N-labeling and 15 N-gas chromatography mass spectrometry. The optimal glucose concentration for plant growth was 4.5 μM or 25 μM when supplied with glycine alone or the N mixture, respectively, and resulted in a >25% increase in seedling biomass. The addition of glucose affected the relative contribution from organic or inorganic sources to overall N uptake. When glucose was added at optimal concentrations, glycine was preferentially used as an N source, while the relative contribution from nitrate was reduced. The limiting step for glycine N contribution was active uptake in the roots in high glucose and single-N-source conditions; however, root metabolism of glycine to serine was limiting in high-glucose and mixed-N-source conditions. The addition of low concentrations of glucose increased the relative uptake of organic nitrogen and reduced the uptake of nitrate, suggesting a feasible way to decrease nitrate content and increase the edible quality of vegetables.

Spatial 2D distribution of the proportion of soil phosphorus uptake by maize and soybean caused by tillage and fertilization

NASA Astrophysics Data System (ADS)

Li, Haixiao; Mollier, Alain; Ziadi, Noura; Messiga, Aimé Jean; Parent, Leon-Étienne; Morel, Christian

2017-04-01

Plant-available soil phosphorus (P) accumulates primarily in the topsoil due to P fertilization and P released from crop residues. In contrast with conventional tillage (moldboard plough, MP), conservation tillage [e.g. no-till, (NT)] often leads to higher P concentrations in the topsoil mainly due to the absence of mixing between soil, fertilizer, and crop residues. Our objective was to estimate the proportion of P uptake from a given soil mass across the soil profile under maize and soybean as the product of root surface density proportions and local plant-available soil P. This study was conducted on a long-term field experiment initiated in 1992 in southern Quebec, Canada, and established on a clay-loam soil under MP and NT systems. The experiment was factorially treated with three P doses (0, 17.5 and 35 kg P ha-1 applied as triple superphosphate on maize at 5 cm depth and at 5 cm on one side of the crop row). Soil was sampled at flowering stage at five depths (0-5, 5-10, 10-20, 20-30 and 30-40 cm) and three horizontal distances perpendicular to the crop row (5, 15 and 25 cm) in 2014 and 2015 to map a grid soil P availability to plants, e.g. phosphate ion concentrations in solution and the time-dependent amount of phosphate ions that can equilibrate- solution by diffusion, root distribution, and consequently crop P uptake, which was calculated as the fraction of plant-available soil P intercepted by surface roots. In general, NT tended to have higher soil P status in the upper soil layer and lower soil P status in the deeper soil layer compared to MP ; confirming previous results obtained from the same experimental site. This variation along the soil profile was significantly affected by sampling distance to crop row with higher concentration observed at 5-cm distance mainly because of the placement of P fertilizers. The 2D distribution of P uptake depended on tillage practice and P fertilization. There was higher proportions of P uptake from the 0-10 and 0-20 cm layers in NT (46% and 79%, respectively) compared to MP (25% and 68%, respectively). On average 8% of P uptake originated from the 30-40 cm layer irrespective of tillage, indicating that plant P uptake from deeper soil layers also influenced the P cycling in agroecosystems.

Effects of nano-SiO2 on the adsorption of chiral metalaxyl to agricultural soils.

PubMed

Huang, Junxing; Liang, Chuanzhou; Zhang, Xu

2017-06-01

The application of nanotechnology in agriculture, pesticide delivery and other related fields increases the occurrence of engineered nanoparticles (ENPs) in soil. Since ENPs have larger surface areas and normally a high adsorption capacity for organic pollutants, they are thought to influence the transport of pesticides in soils and thereafter influence the uptake and transformation of pesticides. The adsorption pattern of racemic-metalaxyl on agricultural soils including kinetics and isotherms changed in the presence of nano-SiO 2 . The adsorption of racemic-metalaxyl on agricultural soil was not enantioselective, in either the presence or the absence of SiO 2 . The adsorption of racemic-metalaxyl on SiO 2 decreased to some extent in soil-SiO 2 mixture, and the absolute decrease was dependent on soil properties. The decreased adsorption of metalaxyl on SiO 2 in soil-SiO 2 mixture arose from the competitive adsorption of soil-dissolved organic matter and the different dispersion and aggregation behaviors of SiO 2 in the presence of soil. Interactions between SiO 2 and soil particles also contributed to the decreased adsorption of metalaxyl on SiO 2 , and the interactions were analyzed by extended Derjaguin-Landau-Verwey-Overbeek theory. The results showed that the presence of nano-particles in soils could decrease the mobility of pesticides in soils and that this effect varied with different soil compositions. Copyright © 2017 Elsevier Ltd. All rights reserved.

Calcium biogeochemical cycle at the beech tree-soil solution interface from the Strengbach CZO (NE France): insights from stable Ca and radiogenic Sr isotopes

NASA Astrophysics Data System (ADS)

Schmitt, Anne-Désirée; Gangloff, Sophie; Labolle, François; Chabaux, François; Stille, Peter

2017-09-01

Calcium (Ca) is the fourth most abundant element in mineral nutrition and plays key physiological and structural roles in plant metabolism. At the soil-water-plant scale, stable Ca isotopes are a powerful tool for the identification of plant-mineral interactions and recycling via vegetation. Radiogenic Sr isotopes are often used as tracers of Ca sources and mixtures of different reservoirs. In this study, stable Ca and radiogenic Sr are combined and analysed in several organs from two beech trees that were collected in June and September in the Strengbach critical zone observatory (CZO) (NE France) and in corresponding soil solutions. At the beech-tree scale, this study confirms the field Ca adsorption (i.e., physico-chemical mechanism and not vital effects) on carboxyl acid groups of pectin in the apoplasm of small roots. The analysis of the xylem sap and corresponding organs shows that although the Strengbach CZO is nutrient-poor, Ca seems to be non-limiting for tree-growth. Different viscosities of xylem sap between the stemwood and branches or leaves can explain δ44/40Ca values in different tree-organs. The bark and phloem 40Ca-enrichments could be due to Ca-oxalate precipitation in the bark tissues and in the phloem. The results from this study regarding the combination of these two isotopic systems show that the isotopic signatures of the roots are dominated by Ca fractionation mechanisms and Sr, and thus Ca, source variations. In contrast, translocation mechanisms are only governed by Ca fractionation processes. This study showed that at the root-soil solution interface, litter degradation was not the main source of Ca and Sr and that the soil solutions are not the complement of uptake by roots for samples from the 2011/2013 period. The opposite is observed for older samples. These observations indicate the decreasing contribution of low radiogenic Sr fluxes, such as recycling, alimenting the soil solutions. Such reduced importance of nutrient uptake and biomass production by the trees could be because the Strengbach trees are ageing and probably weakened by repeated storm events and drought episodes.

Microbial imprint on soil-atmosphere H2, COS, and CO2 fluxes

NASA Astrophysics Data System (ADS)

Meredith, L. K.; Commane, R.; Munger, J. W.; Wofsy, S. C.; Prinn, R. G.

2013-12-01

Microorganisms drive large trace gas fluxes between soil and atmosphere, but the signal can be difficult to detect and quantify in the presence of stronger exchange processes in an ecosystem. Partitioning methods are often needed to estimate trace gas budgets and to develop process-based models to explore the sensitivity of microbe-mediated fluxes. In this study, we test the performance of trace gases with predominantly microbe-mediated soil fluxes as a metric of the soil microbial uptake activity of other trace gases. Using simultaneous, collocated measurements at Harvard Forest, we consider three trace gases with microbe-mediated soil fluxes of various importance relative to their other (mainly plant-mediated) ecosystem fluxes: molecular hydrogen (H2), carbonyl sulfide (COS), and carbon dioxide (CO2). These gases probe different aspects of the soil trace-gas microbiology. Soil H2 uptake is a redox reaction driving the energy metabolism of a portion of the microbial community, while soil CO2 respiration is a partial proxy for the overall soil microbial metabolism. In comparison, very little is understood about the microbiological and environmental drivers of soil COS uptake and emissions. In this study, we find that H2, COS, and CO2 soil uptake rates are often correlated, but the relative soil uptake between gases is not constant, and is influenced by seasonality and local environmental conditions. We also consider how differences in the microbial communities and pathways involved in the soil fluxes may explain differences in the observations. Our results are important for informing previous studies using tracer approaches. For example, H2 has been used to estimate COS soil uptake, which must be accounted for to use COS as a carbon cycle tracer. Furthermore, the global distribution of H2 deposition velocity has been inferred from net primary productivity (CO2). Given that insufficient measurement frequency and spatial distribution exists to partition global net ecosystem fluxes of many climate-relevant trace gases, insight into the use of certain trace gases to estimate rates of more general biogeochemical processes is useful.

Plant Nutrition 2: Macronutrients (N, P, K, S, Mg, and Ca)

PubMed Central

2014-01-01

Summary In the second of three lessons spanning the topic of Plant Nutrition, we examine how macronutrients affect plant growth. Specifically, we look at (1) the availability of nutrients in the soil along with the effects of soil microbes and physical properties on their availability; (2) nutrient uptake from the external environment, across plasma membranes and into plant cells; (3) in some cases, the assimilation of the nutrient into organic molecules; (4) the distribution and redistribution of nutrients throughout the plant; and (5) regulation of these processes. In parallel, we examine the genetic basis of a plant's nutrient use efficiency (NUE) and evaluate strategies by which to replenish nutrients that growing plants extract from soil.

Effects of heavy metals contained in soil irrigated with a mixture of sewage sludge and effluent for thirty years on soil microbial biomass and plant growth

NASA Astrophysics Data System (ADS)

Katanda, Y.; Mushonga, C.; Banganayi, F.; Nyamangara, J.

The use of sewage effluent as a source of nutrients and water in peri-urban crop production is widespread in developing countries. A study was conducted in 2005 at Crowborough and Firle farms (near Harare) to assess effect of Cd on microbial biomass and activity, effect of sewage sludge and effluent on soybean (Glycine max L (Merr)) nodulation, and uptake of Zn and Cu by lettuce ( Lactuca sativa L.), mustard rape ( Brassica juncea L.), covo ( Brassica napus) and star grass ( Cynodon nlemfuensis). The soil that was used had been irrigated with sewage sludge and effluent for 30 years. Soil collected from Crowborough farm was enriched with Cd to different concentrations (0.4-5 mg Cd kg -1 soil) using Cd(NO 3) 2 and microbial biomass C and N (chloroform-incubation extraction) and respiration rates (CO 2 evolution) determined. A similar experiment to determine the effect of repeated addition of small amounts of Cd to soil over time on the same parameters was conducted. Three vegetables and star grass were grown in a pot experiment and harvested at six weeks after transplanting for the determination of above ground dry matter yield, and Zn and Cu, uptake. In another pot experiment, two soybean varieties, Magoye and Solitaire, were harvested after eight weeks and nodule number and effectiveness, and above ground dry matter yield were then determined. Cd significantly decreased biomass C (68%) and N (73%). Microbial respiration also significantly decreased. It was concluded that long-term application of sewage sludge and effluent to soil has negative effects on soil micro organisms, including Rhizobia. These micro organisms are essential for N-fixation. The damage to Rhizobia, caused diminished nodulation of soybean. Mustard rape and lettuce can accumulate Zn and Cu beyond toxic limits without apparent reduction in growth thereby posing a serious concern to the food chain. The consumption of mustard rape and lettuce grown on soil amended with sewage sludge and effluent at Crowborough and Firle farms poses a health risk to people who consume vegetables grown in this area.

Nitrogen Cycling and GHG Emissions of Natural and Managed Tropical Ecosystems at Mt. Kilimanjaro

NASA Astrophysics Data System (ADS)

Gutlein, A.; Ralf, K.; Gerschlauer, F.; Dannenmann, M.; Butterbach-Bahl, K.; Diaz-Pines, E.

2016-12-01

In a rapidly changing world understanding of natural ecosystems response to human perturbations such as land use and climate changes as well as habitat destruction is crucial with respect to sustainability of ecosystem services. This is particularily true for tropical forest ecosystems which have significant effects on the major biogeochemical cycles and global climate. Here we present a comprehensive dataset of nitrogen cycling and GHG emissions of natural and managed ecosystems along land use and climate gradients at Mt. Kilimanjaro, Tanzania including different forest ecosystems, homegardens, and coffee plantations. Soil N turnover rates were highest in the Ocotea forest and progressively decreased with decreasing annual rainfall and increasing land use intensity. Nitrogen production and immobilization rates positively correlated with soil organic C and total N concentrations as well as substrate availability of dissolved organic C and N, but correlated less with soil ammonium and nitrate concentrations. By using indicators of N retention and characteristics of soil nutrient status, we observed a grouping of faster, but tighter N cycling in the (semi-) natural savanna, Helychrysum and Ocotea forest. This contrasted with a more open N cycle in managed systems (homegarden and coffee plantation) where N was more prone to leaching or gaseous losses due to high nitrate production rates. The partly disturbed lower montane forest ranged in between these two groups. These finding could be supported by differences in natural 15N abundance of litter and soil across all sites. Comparing GHG emissions at the land use gradient showed, that with increasing intensification (lower montane forest - homegarden - coffee plantation) N2O emissions increased but at the same time the soil sink for atmospheric CH4 decreased. GHG emission measurements at the climate gradient (savanna, lower montane, Ocotea and Podocarpus forest, Helychrysum) revealed that differences in soil moisture were mainly overriding temperature effects, except for the Helychrysum site with lowest N2O emissions and CH4 uptake rates. Overall wettest soil conditions at the Ocotea site caused likely limited soil aeration, and thus highest emission of N2O and hampered atmospheric CH4 uptake rates.

Simulating ectomycorrhiza in boreal forests: implementing ectomycorrhizal fungi model MYCOFON in CoupModel (v5)

NASA Astrophysics Data System (ADS)

He, Hongxing; Meyer, Astrid; Jansson, Per-Erik; Svensson, Magnus; Rütting, Tobias; Klemedtsson, Leif

2018-02-01

The symbiosis between plants and Ectomycorrhizal fungi (ECM) is shown to considerably influence the carbon (C) and nitrogen (N) fluxes between the soil, rhizosphere, and plants in boreal forest ecosystems. However, ECM are either neglected or presented as an implicit, undynamic term in most ecosystem models, which can potentially reduce the predictive power of models.

In order to investigate the necessity of an explicit consideration of ECM in ecosystem models, we implement the previously developed MYCOFON model into a detailed process-based, soil-plant-atmosphere model, Coup-MYCOFON, which explicitly describes the C and N fluxes between ECM and roots. This new Coup-MYCOFON model approach (ECM explicit) is compared with two simpler model approaches: one containing ECM implicitly as a dynamic uptake of organic N considering the plant roots to represent the ECM (ECM implicit), and the other a static N approach in which plant growth is limited to a fixed N level (nonlim). Parameter uncertainties are quantified using Bayesian calibration in which the model outputs are constrained to current forest growth and soil C / N ratio for four forest sites along a climate and N deposition gradient in Sweden and simulated over a 100-year period.

The nonlim approach could not describe the soil C / N ratio due to large overestimation of soil N sequestration but simulate the forest growth reasonably well. The ECM implicit and explicit approaches both describe the soil C / N ratio well but slightly underestimate the forest growth. The implicit approach simulated lower litter production and soil respiration than the explicit approach. The ECM explicit Coup-MYCOFON model provides a more detailed description of internal ecosystem fluxes and feedbacks of C and N between plants, soil, and ECM. Our modeling highlights the need to incorporate ECM and organic N uptake into ecosystem models, and the nonlim approach is not recommended for future long-term soil C and N predictions. We also provide a key set of posterior fungal parameters that can be further investigated and evaluated in future ECM studies.

Nitrogen and Phosphorus Plant Uptake During Periods with no Photosynthesis Accounts for About Half of Global Annual Uptake

NASA Astrophysics Data System (ADS)

Riley, W. J.; Zhu, Q.; Tang, J.

2017-12-01

Uncertainties in current Earth System Model (ESM) predictions of terrestrial carbon-climate feedbacks over the 21st century are as large as, or larger than, any other reported natural system uncertainties. Soil Organic Matter (SOM) decomposition and photosynthesis, the dominant fluxes in this regard, are tightly linked through nutrient availability, and the recent Coupled Model Inter-comparison Project 5 (CMIP5) used for climate change assessment had no credible representations of these constraints. In response, many ESM land models (ESMLMs) have developed dynamic and coupled soil and plant nutrient cycles. Here we quantify terrestrial carbon cycle impacts from well-known observed plant nutrient uptake mechanisms ignored in most current ESMLMs. In particular, we estimate the global role of plant root nutrient competition with microbes and abiotic process at night and during the non-growing season using the ACME land model (ALMv1-ECA-CNP) that explicitly represents these dynamics. We first demonstrate that short-term nutrient uptake dynamics and competition between plants and microbes are accurately predicted by the model compared to 15N and 33P isotopic tracer measurements from more than 20 sites. We then show that global nighttime and non-growing season nitrogen and phosphorus uptake accounts for 46 and 45%, respectively, of annual uptake, with large latitudinal variation. Model experiments show that ignoring these plant uptake periods leads to large positive biases in annual N leaching (globally 58%) and N2O emissions (globally 68%). Biases these large will affect modeled carbon cycle dynamics over time, and lead to predictions of ecosystems that have overly open nutrient cycles and therefore lower capacity to sequester carbon.

Changes in soil moisture drive soil methane uptake along a fire regeneration chronosequence in a eucalypt forest landscape.

PubMed

Fest, Benedikt; Wardlaw, Tim; Livesley, Stephen J; Duff, Thomas J; Arndt, Stefan K

2015-11-01

Disturbance associated with severe wildfires (WF) and WF simulating harvest operations can potentially alter soil methane (CH4 ) oxidation in well-aerated forest soils due to the effect on soil properties linked to diffusivity, methanotrophic activity or changes in methanotrophic bacterial community structure. However, changes in soil CH4 flux related to such disturbances are still rarely studied even though WF frequency is predicted to increase as a consequence of global climate change. We measured in-situ soil-atmosphere CH4 exchange along a wet sclerophyll eucalypt forest regeneration chronosequence in Tasmania, Australia, where the time since the last severe fire or harvesting disturbance ranged from 9 to >200 years. On all sampling occasions, mean CH4 uptake increased from most recently disturbed sites (9 year) to sites at stand 'maturity' (44 and 76 years). In stands >76 years since disturbance, we observed a decrease in soil CH4 uptake. A similar age dependency of potential CH4 oxidation for three soil layers (0.0-0.05, 0.05-0.10, 0.10-0.15 m) could be observed on incubated soils under controlled laboratory conditions. The differences in soil CH4 uptake between forest stands of different age were predominantly driven by differences in soil moisture status, which affected the diffusion of atmospheric CH4 into the soil. The observed soil moisture pattern was likely driven by changes in interception or evapotranspiration with forest age, which have been well described for similar eucalypt forest systems in south-eastern Australia. Our results imply that there is a large amount of variability in CH4 uptake at a landscape scale that can be attributed to stand age and soil moisture differences. An increase in severe WF frequency in response to climate change could potentially increase overall forest soil CH4 sinks. © 2015 John Wiley & Sons Ltd.

Effect of chloride in soil solution on the plant availability of biosolid-borne cadmium.

PubMed

Weggler, Karin; McLaughlin, Michael J; Graham, Robin D

2004-01-01

Increasing chloride (Cl) concentration in soil solution has been shown to increase cadmium (Cd) concentration in soil solution and Cd uptake by plants, when grown in phosphate fertilizer- or biosolid-amended soils. However, previous experiments did not distinguish between the effect of Cl on biosolid-borne Cd compared with soil-borne Cd inherited from previous fertilizer history. A factorial pot experiment was conducted with biosolid application rates of 0, 20, 40, and 80 g biosolids kg(-1) and Cl concentration in soil solution ranging from 1 to 160 mM Cl. The Cd uptake of wheat (Triticum aestivum L. cv. Halberd) was measured and major cations and anions in soil solution were determined. Cadmium speciation in soil solution was calculated using GEOCHEM-PC. The Cd concentration in plant shoots and soil solution increased with biosolid application rates up to 40 g kg(-1), but decreased slightly in the 80 g kg(-1) biosolid treatment. Across biosolid application rates, the Cd concentration in soil solution and plant shoots was positively correlated with the Cl concentration in soil solution. This suggests that biosolid-borne Cd is also mobilized by chloride ligands in soil solution. The soil solution CdCl+ activity correlated best with the Cd uptake of plants, although little of the variation in plant Cd concentrations was explained by activity of CdCl+ in higher sludge treatments. It was concluded that chlorocomplexation of Cd increased the phytoavailability of biosolid-borne Cd to a similar degree as soil (fertilizer) Cd. There was a nonlinear increase in plant uptake and solubility of Cd in biosolid-amended soils, with highest plant Cd found at the 40 g kg(-1) rate of biosolid application, and higher rates (80 g kg(-1)) producing lower plant Cd uptake and lower Cd solubility in soil. This is postulated to be a result of Cd retention by CaCO3 formed as a result of the high alkalinity induced by biosolid application.

Modelling the influence of ectomycorrhizal decomposition on plant nutrition and soil carbon sequestration in boreal forest ecosystems.

PubMed

Baskaran, Preetisri; Hyvönen, Riitta; Berglund, S Linnea; Clemmensen, Karina E; Ågren, Göran I; Lindahl, Björn D; Manzoni, Stefano

2017-02-01

Tree growth in boreal forests is limited by nitrogen (N) availability. Most boreal forest trees form symbiotic associations with ectomycorrhizal (ECM) fungi, which improve the uptake of inorganic N and also have the capacity to decompose soil organic matter (SOM) and to mobilize organic N ('ECM decomposition'). To study the effects of 'ECM decomposition' on ecosystem carbon (C) and N balances, we performed a sensitivity analysis on a model of C and N flows between plants, SOM, saprotrophs, ECM fungi, and inorganic N stores. The analysis indicates that C and N balances were sensitive to model parameters regulating ECM biomass and decomposition. Under low N availability, the optimal C allocation to ECM fungi, above which the symbiosis switches from mutualism to parasitism, increases with increasing relative involvement of ECM fungi in SOM decomposition. Under low N conditions, increased ECM organic N mining promotes tree growth but decreases soil C storage, leading to a negative correlation between C stores above- and below-ground. The interplay between plant production and soil C storage is sensitive to the partitioning of decomposition between ECM fungi and saprotrophs. Better understanding of interactions between functional guilds of soil fungi may significantly improve predictions of ecosystem responses to environmental change. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Ancient low–molecular-weight organic acids in permafrost fuel rapid carbon dioxide production upon thaw

USGS Publications Warehouse

Drake, Travis W.; Wickland, Kimberly P.; Spencer, Robert G. M.; McKnight, Diane M.; Striegl, Robert G.

2015-01-01

Northern permafrost soils store a vast reservoir of carbon, nearly twice that of the present atmosphere. Current and projected climate warming threatens widespread thaw of these frozen, organic carbon (OC)-rich soils. Upon thaw, mobilized permafrost OC in dissolved and particulate forms can enter streams and rivers, which are important processors of OC and conduits for carbon dioxide (CO2) to the atmosphere. Here, we demonstrate that ancient dissolved organic carbon (DOC) leached from 35,800 y B.P. permafrost soils is rapidly mineralized to CO2. During 200-h experiments in a novel high–temporal-resolution bioreactor, DOC concentration decreased by an average of 53%, fueling a more than sevenfold increase in dissolved inorganic carbon (DIC) concentration. Eighty-seven percent of the DOC loss to microbial uptake was derived from the low–molecular-weight (LMW) organic acids acetate and butyrate. To our knowledge, our study is the first to directly quantify high CO2 production rates from permafrost-derived LMW DOC mineralization. The observed DOC loss rates are among the highest reported for permafrost carbon and demonstrate the potential importance of LMW DOC in driving the rapid metabolism of Pleistocene-age permafrost carbon upon thaw and the outgassing of CO2 to the atmosphere by soils and nearby inland waters.

Ancient low-molecular-weight organic acids in permafrost fuel rapid carbon dioxide production upon thaw.

PubMed

Drake, Travis W; Wickland, Kimberly P; Spencer, Robert G M; McKnight, Diane M; Striegl, Robert G

2015-11-10

Northern permafrost soils store a vast reservoir of carbon, nearly twice that of the present atmosphere. Current and projected climate warming threatens widespread thaw of these frozen, organic carbon (OC)-rich soils. Upon thaw, mobilized permafrost OC in dissolved and particulate forms can enter streams and rivers, which are important processors of OC and conduits for carbon dioxide (CO2) to the atmosphere. Here, we demonstrate that ancient dissolved organic carbon (DOC) leached from 35,800 y B.P. permafrost soils is rapidly mineralized to CO2. During 200-h experiments in a novel high-temporal-resolution bioreactor, DOC concentration decreased by an average of 53%, fueling a more than sevenfold increase in dissolved inorganic carbon (DIC) concentration. Eighty-seven percent of the DOC loss to microbial uptake was derived from the low-molecular-weight (LMW) organic acids acetate and butyrate. To our knowledge, our study is the first to directly quantify high CO2 production rates from permafrost-derived LMW DOC mineralization. The observed DOC loss rates are among the highest reported for permafrost carbon and demonstrate the potential importance of LMW DOC in driving the rapid metabolism of Pleistocene-age permafrost carbon upon thaw and the outgassing of CO2 to the atmosphere by soils and nearby inland waters.

Ancient low–molecular-weight organic acids in permafrost fuel rapid carbon dioxide production upon thaw

PubMed Central

Drake, Travis W.; Wickland, Kimberly P.; Spencer, Robert G. M.; McKnight, Diane M.; Striegl, Robert G.

2015-01-01

Northern permafrost soils store a vast reservoir of carbon, nearly twice that of the present atmosphere. Current and projected climate warming threatens widespread thaw of these frozen, organic carbon (OC)-rich soils. Upon thaw, mobilized permafrost OC in dissolved and particulate forms can enter streams and rivers, which are important processors of OC and conduits for carbon dioxide (CO2) to the atmosphere. Here, we demonstrate that ancient dissolved organic carbon (DOC) leached from 35,800 y B.P. permafrost soils is rapidly mineralized to CO2. During 200-h experiments in a novel high–temporal-resolution bioreactor, DOC concentration decreased by an average of 53%, fueling a more than sevenfold increase in dissolved inorganic carbon (DIC) concentration. Eighty-seven percent of the DOC loss to microbial uptake was derived from the low–molecular-weight (LMW) organic acids acetate and butyrate. To our knowledge, our study is the first to directly quantify high CO2 production rates from permafrost-derived LMW DOC mineralization. The observed DOC loss rates are among the highest reported for permafrost carbon and demonstrate the potential importance of LMW DOC in driving the rapid metabolism of Pleistocene-age permafrost carbon upon thaw and the outgassing of CO2 to the atmosphere by soils and nearby inland waters. PMID:26504243

The EDTA Amendment in Phytoextraction of (134)Cs From Soil by Indian Mustard (Brassica juncea).

PubMed

Tjahaja, Poppy Intan; Sukmabuana, Putu; Roosmini, Dwina

2015-01-01

Soil contamination with radiocaesium is a significant problem at any countries when a nuclear accident occurred. Recently, phytoextraction technique is developed to remediate the contaminated environment. However, the application is limited by the availability of the contaminant for root uptake. Therefore, a green house trial experiment of soil amendment with ethylene diamine tetraacetic acid (EDTA) has been conducted to examine (134)Cs availability for root uptake. Two groups of Indian mustard (Brassica juncea) were cultivated in (134)Cs contaminated soil. The soil in the first group was treated with EDTA amendment, while the other was not. Plant growth was observed gravimetrically and the (134)Cs concentration in soil as well as plants were determined using gamma spectrometry. The plant uptake capacity was determined as transfer factor (Fv), and the Fv values of 0.22 ± 0.0786 and 0.12 ± 0.039 were obtained for the soil treated with and without EDTA amendment, respectively. The phytoextraction efficiency of the plant cultivated in (134)Cs contaminated soil both with and without EDTA amendment was low. The EDTA amendment to the soil seems to enhance the (134)Cs availability for root uptake of Indian mustard and can still be considered to assist the field phytoremediation of contaminated soil.

Effect of ammonium and nitrate on ferric chelate reductase and nitrate reductase in Vaccinium species.

PubMed

Poonnachit, U; Darnell, R

2004-04-01

Most Vaccinium species have strict soil requirements for optimal growth, requiring low pH, high iron availability and nitrogen primarily in the ammonium form. These soils are limited and are often located near wetlands. Vaccinium arboreum is a wild species adapted to a wide range of soils, including high pH, low iron, and nitrate-containing soils. This broader soil adaptation in V. arboreum may be related to increased efficiency of iron or nitrate uptake compared with the cultivated Vaccinium species. Nitrate, ammonium and iron uptake, and nitrate reductase (NR) and ferric chelate reductase (FCR) activities were compared in two Vaccinium species grown hydroponically in either nitrate or ammonia, with or without iron. The species studied were the wild V. arboreum and the cultivated V. corymbosum interspecific hybrid, which exhibits the strict soil requirements of most Vaccinium species. Ammonium uptake was significantly greater than nitrate uptake in both species, while nitrate uptake was greater in the wild species, V. arboreum, compared with the cultivated species, V. corymbosum. The increased nitrate uptake in V. arboreum was correlated with increased root NR activity compared with V. corymbosum. The lower nitrate uptake in V. corymbosum was reflected in decreased plant dry weight in this species compared with V. arboreum. Root FCR activity increased significantly in V. corymbosum grown under iron-deficient conditions, compared with the same species grown under iron-sufficient conditions or with V. arboreum grown under either iron condition. V. arboreum appears to be more efficient in acquiring nitrate compared with V. corymbosum, possibly due to increased NR activity and this may partially explain the wider soil adaptation of V. arboreum.

Effect of Ammonium and Nitrate on Ferric Chelate Reductase and Nitrate Reductase in Vaccinium Species

PubMed Central

POONNACHIT, U.; DARNELL, R.

2004-01-01

• Background and Aims Most Vaccinium species have strict soil requirements for optimal growth, requiring low pH, high iron availability and nitrogen primarily in the ammonium form. These soils are limited and are often located near wetlands. Vaccinium arboreum is a wild species adapted to a wide range of soils, including high pH, low iron, and nitrate‐containing soils. This broader soil adaptation in V. arboreum may be related to increased efficiency of iron or nitrate uptake compared with the cultivated Vaccinium species. • Methods Nitrate, ammonium and iron uptake, and nitrate reductase (NR) and ferric chelate reductase (FCR) activities were compared in two Vaccinium species grown hydroponically in either nitrate or ammonia, with or without iron. The species studied were the wild V. arboreum and the cultivated V. corymbosum interspecific hybrid, which exhibits the strict soil requirements of most Vaccinium species. • Key Results Ammonium uptake was significantly greater than nitrate uptake in both species, while nitrate uptake was greater in the wild species, V. arboreum, compared with the cultivated species, V. corymbosum. The increased nitrate uptake in V. arboreum was correlated with increased root NR activity compared with V. corymbosum. The lower nitrate uptake in V. corymbosum was reflected in decreased plant dry weight in this species compared with V. arboreum. Root FCR activity increased significantly in V. corymbosum grown under iron‐deficient conditions, compared with the same species grown under iron‐sufficient conditions or with V. arboreum grown under either iron condition. • Conclusions. V. arboreum appears to be more efficient in acquiring nitrate compared with V. corymbosum, possibly due to increased NR activity and this may partially explain the wider soil adaptation of V. arboreum. PMID:14980973

Evaluation for rock phosphate solubilization in fermentation and soil-plant system using a stress-tolerant phosphate-solubilizing Aspergillus niger WHAK1.

PubMed

Xiao, Chunqiao; Zhang, Huaxiang; Fang, Yujuan; Chi, Ruan

2013-01-01

A strain WHAK1, identified as Aspergillus niger, was isolated from Yichang phosphate mines in Hubei province of China. The fungus developed a phosphate solubilization zone on modified National Botanical Research Institute's phosphate growth (NBRIP) agar medium, supplemented with tricalcium phosphate. The fungus was applied in a repeated-batch fermentation process in order to test its effect on solubilization of rock phosphate (RP). The results showed that A. niger WHAK1 could effectively solubilize RP in NBRIP liquid medium and released soluble phosphate in the broth, which can be illustrated by the observation of scanning electron microscope, energy-dispersive X-ray microanalysis, and Fourier transform infrared spectroscopy. Acidification of the broth seemed to be the major mechanism for RP solubilization by the fungus. Indeed, multiple organic acids (mainly gluconic acid) were detected in the broth by high-performance liquid chromatography analysis. These organic acids caused a significant drop of pH and an obvious rise of titratable acidity in the broth. The fungus also exhibited high levels of tolerance against temperature, pH, salinity, and desiccation stresses, although a significant decline in the fungal growth and release of soluble phosphate was marked under increasing intensity of stress parameters. Further, the fungus was introduced into the soil supplemented with RP to analyze its effect on plant growth and phosphate uptake of wheat plants. The result revealed that inoculation of A. niger WHAK1 significantly increased the growth and phosphate uptake of wheat plants in the RP-amended soil compared to the control soil.

Correlation of Intracellular Trehalose Concentration with Desiccation Resistance of Soil Escherichia coli Populations

PubMed Central

Zhang, Qian

2012-01-01

Naturalized soil Escherichia coli populations need to resist common soil desiccation stress in order to inhabit soil environments. In this study, four representative soil E. coli strains and one lab strain, MG1655, were tested for desiccation resistance via die-off experiments in sterile quartz sand under a potassium acetate-induced desiccation condition. The desiccation stress caused significantly lower die-off rates of the four soil strains (0.17 to 0.40 day−1) than that of MG1655 (0.85 day−1). Cellular responses, including extracellular polymeric substance (EPS) production, exogenous glycine betaine (GB) uptake, and intracellular compatible organic solute synthesis, were quantified and compared under the desiccation and hydrated control conditions. GB uptake appeared not to be a specific desiccation response, while EPS production showed considerable variability among the E. coli strains. All E. coli strains produced more intracellular trehalose, proline, and glutamine under the desiccation condition than the hydrated control, and only the trehalose concentration exhibited a significant correlation with the desiccation-contributed die-off coefficients (Spearman's ρ = −1.0; P = 0.02). De novo trehalose synthesis was further determined for 15 E. coli strains from both soil and nonsoil sources to determine its prevalence as a specific desiccation response. Most E. coli strains (14/15) synthesized significantly more trehalose under the desiccation condition, and the soil E. coli strains produced more trehalose (106.5 ± 44.9 μmol/mg of protein [mean ± standard deviation]) than the nonsoil reference strains (32.5 ± 10.5 μmol/mg of protein). PMID:22885754

Differences in fate, behavior and uptake of conventional- and nano-pesticides

NASA Astrophysics Data System (ADS)

Anuar, M. Firdaus Mohd; E Hodson, Mark; Boxall, Alistair BA

2017-04-01

Nanopesticides, in which conventional pesticides are designed into nanoparticles, are now available and are marketed as having improved longevity and efficacy in the environment. Nanoparticles are known to have different properties to dissolved chemicals and as such it is possible that the fate and behaviour of nanopesticides differs from conventional pesticides. We present work on the synthetic pyrethroid bifenthrin to explore the implications of nanoencapsulation for the sorption, persistence and uptake of the active ingredient in soil-earthworm systems. Studies were done using the active ingredient, a traditional formulation and two nanoformulations. In adsorption experiments conducted using five soils with a range of properties (pH 4.7 - 7.7; % organic carbon 1.2 - 5.2; texture silt loam to loamy sand), adsorption was well described by linear isotherms. Adsorption of analytical grade bifenthrin (Kd = 1800 - 7200 mL / g) was greater than that of a commercial formulation (Kd = 190 - 470 mL / g) which in turn was greater than that of nanoformulations (Kd = 52 - 150 mL / g). For all bifenthrin types adsorption increased with increasing soil organic matter content. Degradation rates of the analytical grade bifenthrin and commercial formulation were similar and faster than those of nanoformulations. Degradation rates were faster in non-sterile compared to sterile conditions. These results suggest that nano-encapsulation could lead to increased mobility and persistence of bifenthrin in the environment and therefore potentially increased exposure and bioavailability. To investigate the effects of nanoencapsulation on uptake we carried out a series of uptake and excretion experiments using the earthworms Eisenia fetida and Lumbricus terrestris. Over the exposure period the concentration of bifenthrin in the soil decreased and increased in the earthworms. Rates of accumulation and excretion were greater for the nanobifenthrin than the non-nanoformulation and active ingredient. Dissection and analysis of earthworm tissues indicated that the accumulated bifenthrin from the nano exposure was concentrated in the earthworm gut whereas the accumulated bifenthrin in the conventional exposure was concentrated in the earthworm tissues. We used kinetic modelling to determine bioconcentration factors. The higher accumulation and excretion rates result in predicted lower bioconcentration factors for the nanobofenthrin compared to the conventional and analytical grade forms. Our experiments demonstrate the differing behaviours of a conventional and nano-formluated pesticide therefore suggesting that current environmental risk assessment methodologies for conventional pesticides may not be appropriate for nanoformulations.

Effects of citric acid and the siderophore desferrioxamine B (DFO-B) on the mobility of germanium and rare earth elements in soil and uptake in Phalaris arundinacea.

PubMed

Wiche, Oliver; Tischler, Dirk; Fauser, Carla; Lodemann, Jana; Heilmeier, Hermann

2017-08-03

Effects of citric acid and desferrioxamine B (DFO-B) on the availability of Ge and selected rare earth elements (REEs) (La, Nd, Gd, Er) to Phalaris arundinacea were investigated. A soil dissolution experiment was conducted to elucidate the effect of citric acid and DFO-B at different concentrations (1 and 10 mmol L -1 citric acid) on the release of Ge and REEs from soil. In a greenhouse, plants of P. arundinacea were cultivated on soil and on sand cultures to investigate the effects of citric acid and DFO-B on the uptake of Ge and REEs by the plants. Addition of 10 mmol L -1 citric acid significantly enhanced desorption of Ge and REEs from soil and uptake into soil-grown plants. Applying DFO-B enhanced the dissolution and the uptake of REEs, while no effect on Ge was observed. In sand cultures, the presence of citric acid and DFO-B significantly decreased the uptake of Ge and REEs, indicating a discrimination of the formed complexes during uptake. This study clearly indicates that citric acid and the microbial siderophore DFO-B may enhance phytoextraction of Ge and REEs due to the formation of soluble complexes that increase the migration of elements in the rhizosphere.

Effects of soil texture and drought stress on the uptake of antibiotics and the internalization of Salmonella in lettuce following wastewater irrigation.

PubMed

Zhang, Yuping; Sallach, J Brett; Hodges, Laurie; Snow, Daniel D; Bartelt-Hunt, Shannon L; Eskridge, Kent M; Li, Xu

2016-01-01

Treated wastewater is expected to be increasingly used as an alternative source of irrigation water in areas facing fresh water scarcity. Understanding the behaviors of contaminants from wastewater in soil and plants following irrigation is critical to assess and manage the risks associated with wastewater irrigation. The objective of this study was to evaluate the effects of soil texture and drought stress on the uptake of antibiotics and the internalization of human pathogens into lettuce through root uptake following wastewater irrigation. Lettuce grown in three soils with variability in soil texture (loam, sandy loam, and sand) and under different levels of water stress (no drought control, mild drought, and severe drought) were irrigated with synthetic wastewater containing three antibiotics (sulfamethoxazole, lincomycin and oxytetracycline) and one Salmonella strain a single time prior to harvest. Antibiotic uptake in lettuce was compound-specific and generally low. Only sulfamethoxazole was detected in lettuce with increasing uptake corresponding to increasing sand content in soil. Increased drought stress resulted in increased uptake of lincomycin and decreased uptake of oxytetracycline and sulfamethoxazole. The internalization of Salmonella was highly dependent on the concentration of the pathogen in irrigation water. Irrigation water containing 5 Log CFU/mL Salmonella resulted in limited incidence of internalization. When irrigation water contained 8 Log CFU/mL Salmonella, the internalization frequency was significantly higher in lettuce grown in sand than in loam (p = 0.009), and was significantly higher in lettuce exposed to severe drought than in unstressed lettuce (p = 0.049). This work demonstrated how environmental factors affected the risk of contaminant uptake by food crops following wastewater irrigation. Copyright © 2015 Elsevier Ltd. All rights reserved.

The Dionaea muscipula ammonium channel DmAMT1 provides NH₄⁺ uptake associated with Venus flytrap's prey digestion.

PubMed

Scherzer, Sönke; Krol, Elzbieta; Kreuzer, Ines; Kruse, Jörg; Karl, Franziska; von Rüden, Martin; Escalante-Perez, Maria; Müller, Thomas; Rennenberg, Heinz; Al-Rasheid, Khaled A S; Neher, Erwin; Hedrich, Rainer

2013-09-09

Ammonium transporter (AMT/MEP/Rh) superfamily members mediate ammonium uptake and retrieval. This pivotal transport system is conserved among all living organisms. For plants, nitrogen represents a macronutrient available in the soil as ammonium, nitrate, and organic nitrogen compounds. Plants living on extremely nutrient-poor soils have developed a number of adaptation mechanisms, including a carnivorous lifestyle. This study addresses the molecular nature, function, and regulation of prey-derived ammonium uptake in the Venus flytrap, Dionaea muscipula, one of the fastest active carnivores. The Dionaea muscipula ammonium transporter DmAMT1 was localized in gland complexes where its expression was upregulated upon secretion. These clusters of cells decorating the inner trap surface are engaged in (1) secretion of an acidic digestive enzyme cocktail and (2) uptake of prey-derived nutrients. Voltage clamp of Xenopus oocytes expressing DmAMT1 and membrane potential recordings with DmAMT1-expressing Dionaea glands were used to monitor and compare electrophysiological properties of DmAMT1 in vitro and in planta. DmAMT1 exhibited the hallmark biophysical properties of a NH4(+)-selective channel. At depolarized membrane potentials (Vm = 0), the Km (3.2 ± 0.3 mM) indicated a low affinity of DmAMT1 for ammonium that increased systematically with negative going voltages. Upon hyperpolarization to, e.g., -200 mV, a Km of 0.14 ± 0.015 mM documents the voltage-dependent shift of DmAMT1 into a NH4(+) transport system of high affinity. We suggest that regulation of glandular DmAMT1 and membrane potential readjustments of the endocrine cells provide for effective adaptation to varying, prey-derived ammonium sources. Copyright © 2013 Elsevier Ltd. All rights reserved.

Compost and Crude Humic Substances Produced from Selected Wastes and Their Effects on Zea mays L. Nutrient Uptake and Growth

PubMed Central

Palanivell, Perumal; Susilawati, Kasim; Ahmed, Osumanu Haruna; Majid, Nik Muhamad

2013-01-01

Production of agriculture and timber commodities leads generation of enormous quantity of wastes. Improper disposal of these agroindustrial wastes pollutes the environment. This problem could be reduced by adding value to them. Therefore, a study was carried out to analyse and compare the nutrients content of RS, RH, SD, and EFB of composts and crude humic substances; furthermore, their effect on growth, dry matter production, and nutrient uptake for Zea mays L., and selected soil chemical properties were evaluated. Standard procedures were used to analyze humic acids (HA), crude fulvic acids (CFA), crude humin (CH), soil, dry matter production and nutrient uptake. Sawdust and RS compost matured at 42 and 47 days, respectively, while RH and EFB composts were less matured at 49th day of composting. Rice straw compost had higher ash, N, P, CEC, HA, K, and Fe contents with lower organic matter, total organic carbon, and C/N and C/P ratios. The HA of sawdust compost showed higher carbon, carboxylic, K, and Ca contents compared to those of RS, RH, and EFB. Crude FA of RS compost showed highest pH, total K, Ca, Mg, and Na contents. Crude humin from RS compost had higher contents of ash, N, P, and CEC. Rice straw was superior in compost, CFA, and CH, while sawdust compost was superior in HA. Application of sawdust compost significantly increased maize plants' diameter, height, dry matter production, N, P, and cations uptake. It also reduced N, P, and K based chemical fertilizer use by 90%. Application of CH and the composts evaluated in this study could be used as an alternative for chemical fertilizers in maize cultivation. PMID:24319353

Long term effects of fire on carbon and nitrogen pools and fluxes in the arctic permafrost and subarctic forests (ARCTICFIRE)

NASA Astrophysics Data System (ADS)

Pumpanen, Jukka; Köster, Kajar; Aaltonen, Heidi; Köster, Egle; Zhou, Xuan; Zhang-Turpeinen, Huizhong; Heinonsalo, Jussi; Palviainen, Marjo; Sun, Hui; Biasi, Christina; Bruckman, Viktor; Prokushkin, Anatoly; Berninger, Frank

2017-04-01

Boreal forests, which are to a large extent located on permafrost soils, are a crucial part of the climate system because of their large soil carbon (C) pool. Even small change in this pool may change the terrestrial C sink in the arctic into a source with a consequent increase in CO2 concentrations. About 1% of boreal forests are exposed to fire annually, which affects the soil and permafrost under them. Thawing of permafrost increases the depth of the active layer containing large C and N stocks. In addition to temperature, the decomposition of soil organic matter depends on its chemical composition which may also be affected by fires. Part of the soil organic matter is turned into pyrogenic C and N resistant to decomposition. We studied the effect of forest fires on soil greenhouse gas fluxes (CO2, CH4 and N2O)and biogenic volatile organic compound fluxes using portable chambers. The amount of easily decomposable and recalcitrant fractions in soil organic matter were determined with water, ethanol and acid extraction, and the natural 13C and 15N abundances as well as chemical quality with Fourier Transform Infrared Spectroscopy (FTIR) were studied. Also, changes in microbial community structure and composition were analyzed with next generation pyrosequencing. Our preliminary results indicate that soil CO2 effluxes were significantly decreased immediately after the fire, and the recovery to pre-fire level took several decades. Soils were a small sink of CH4 and a source of N2O in all age classes, and the CH4 uptake was increased and N2O fluxes decreased still 20 years following the fire. A clear vertical distribution was observed in the amount of extractable soil organic matter the amount of extractable organic matter being highest in the soil surface layers and decreasing with depth. The natural 13C and 15N abundances and FTIR spectra and changes in microbial community composition are still under analysis.

Biochar soil amendment on alleviation of drought and salt stress in plants: a critical review.

PubMed

Ali, Shafaqat; Rizwan, Muhammad; Qayyum, Muhammad Farooq; Ok, Yong Sik; Ibrahim, Muhammad; Riaz, Muhammad; Arif, Muhammad Saleem; Hafeez, Farhan; Al-Wabel, Mohammad I; Shahzad, Ahmad Naeem

2017-05-01

Drought and salt stress negatively affect soil fertility and plant growth. Application of biochar, carbon-rich material developed from combustion of biomass under no or limited oxygen supply, ameliorates the negative effects of drought and salt stress on plants. The biochar application increased the plant growth, biomass, and yield under either drought and/or salt stress and also increased photosynthesis, nutrient uptake, and modified gas exchange characteristics in drought and salt-stressed plants. Under drought stress, biochar increased the water holding capacity of soil and improved the physical and biological properties of soils. Under salt stress, biochar decreased Na + uptake, while increased K + uptake by plants. Biochar-mediated increase in salt tolerance of plants is primarily associated with improvement in soil properties, thus increasing plant water status, reduction of Na + uptake, increasing uptake of minerals, and regulation of stomatal conductance and phytohormones. This review highlights both the potential of biochar in alleviating drought and salt stress in plants and future prospect of the role of biochar under drought and salt stress in plants.

Can we predict uranium bioavailability based on soil parameters? Part 2: soil solution uranium concentration is not a good bioavailability index.

PubMed

Vandenhove, H; Van Hees, M; Wannijn, J; Wouters, K; Wang, L

2007-01-01

The present study aimed to quantify the influence of soil parameters on uranium uptake by ryegrass. Ryegrass was established on eighteen distinct soils, spiked with (238)U. Uranium soil-to-plant transfer factors (TF) ranged from 0.0003 to 0.0340kgkg(-1). There was no significant relation between the U soil-to-plant transfer (or total U uptake or flux) and the uranium concentration in the soil solution or any other soil factor measured, nor with the U recovered following selective soil extractions. Multiple linear regression analysis resulted in a significant though complex model explaining up to 99% of variation in TF. The influence of uranium speciation on uranium uptake observed was featured: UO(2)(+2), uranyl carbonate complexes and UO(2)PO(4)(-) seem the U species being preferentially taken up by the roots and transferred to the shoots. Improved correlations were obtained when relating the uranium TF with the summed soil solution concentrations of mentioned uranium species.

Total and Bioaccessible Soil Arsenic and Lead Levels and Plant Uptake in Three Urban Community Gardens in Puerto Rico

EPA Science Inventory

Arsenic (As) and lead (Pb) are two contaminants of concern associated with urban gardening. In Puerto Rico, data currently is limited on As and Pb levels in urban garden soils, soil metal (loid) bioaccessibility, and uptake of As and Pb in soil by edible plants grown in the regio...

Native Plant Uptake Model for Radioactive Waste Disposal Areas at the Nevada Test Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

BROWN,THERESA J.; WIRTH,SHARON

1999-09-01

This report defines and defends the basic framework, methodology, and associated input parameters for modeling plant uptake of radionuclides for use in Performance Assessment (PA) activities of Radioactive Waste Management Sites (RWMS) at the Nevada Test Site (NTS). PAs are used to help determine whether waste disposal configurations meet applicable regulatory standards for the protection of human health, the environment, or both. Plants adapted to the arid climate of the NTS are able to rapidly capture infiltrating moisture. In addition to capturing soil moisture, plant roots absorb nutrients, minerals, and heavy metals, transporting them within the plant to the above-groundmore » biomass. In this fashion, plant uptake affects the movement of radionuclides. The plant uptake model presented reflects rooting characteristics important to plant uptake, biomass turnover rates, and the ability of plants to uptake radionuclides from the soil. Parameters are provided for modeling plant uptake and estimating surface contaminant flux due to plant uptake under both current and potential future climate conditions with increased effective soil moisture. The term ''effective moisture'' is used throughout this report to indicate the soil moisture that is available to plants and is intended to be inclusive of all the variables that control soil moisture at a site (e.g., precipitation, temperature, soil texture, and soil chemistry). Effective moisture is a concept used to simplify a number of complex, interrelated soil processes for which there are too little data to model actual plant available moisture. The PA simulates both the flux of radionuclides across the land surface and the potential dose to humans from that flux. Surface flux is modeled here as the amount of soil contamination that is transferred from the soil by roots and incorporated into aboveground biomass. Movement of contaminants to the surface is the only transport mechanism evaluated with the model presented here. Parameters necessary for estimating surface contaminant flux due to native plants expected to inhabit the NTS RWMSS are developed in this report. The model is specific to the plant communities found at the NTS and is designed for both short-term (<1,000 years) and long-term (>1,000 years) modeling efforts. While the model has been crafted for general applicability to any NTS PA, the key radionuclides considered are limited to the transuranic (TRU) wastes disposed of at the NTS.« less

Molybdenum uptake by forage crops grown on sewage sludge -- Amended soils in the field and greenhouse

DOE Office of Scientific and Technical Information (OSTI.GOV)

McBride, M.B.; Richards, B.K.; Steenhuis, T.

2000-06-01

Molybdenum (Mo) is a plant-available element in soils that can adversely affect the health of farm animals. There is a need for more information on its uptake into forage crops from waste materials, such as sewage sludge, applied to agricultural land. Field and greenhouse experiments with several crops grown on long-term sewage sludge-amended soils as well as soils recently amended with dewatered (DW) and alkaline-stabilized (ALK) sludges indicated that Mo supplied from sludge is readily taken up by legumes in particular. Excessive uptake into red clover (Trifolium pratense L.) was seen in a soil that had been heavily amended withmore » sewage sludge 20 yr earlier, where the soil contained about 3 mg Mo/kg soil, three times the background soil concentration. The greenhouse and field studies indicated that Mo can have a long residual availability in sludge-amended soils. The effect of sludge application was to decrease Cu to Mo ratios in legume forages, canola (Brassica napus var. napus) and soybeans [Glycine max (L.) Merr.] below the recommended limit of 2:1 for ruminant diets, a consequence of high bioavailability of Mo and low uptake of Cu added in sludge. Molybdenum uptake coefficients (UCs) for ALK sludge were higher than for DW sludge, presumably due to the greater solubility of Mo measured in the more alkaline sludges and soils. Based on these UCs, it is tentatively recommended that cumulative Mo loadings on forages grown on nonacid soils should not exceed 1.0 kg/ha from ALK sludge or 4.0 kg/ha from DW sludge.« less

Soil methane oxidation in both dry and wet temperate eucalypt forests shows a near-identical relationship with soil air-filled porosity

NASA Astrophysics Data System (ADS)

Fest, Benedikt J.; Hinko-Najera, Nina; Wardlaw, Tim; Griffith, David W. T.; Livesley, Stephen J.; Arndt, Stefan K.

2017-01-01

Well-drained, aerated soils are important sinks for atmospheric methane (CH4) via the process of CH4 oxidation by methane-oxidising bacteria (MOB). This terrestrial CH4 sink may contribute towards climate change mitigation, but the impact of changing soil moisture and temperature regimes on CH4 uptake is not well understood in all ecosystems. Soils in temperate forest ecosystems are the greatest terrestrial CH4 sink globally. Under predicted climate change scenarios, temperate eucalypt forests in south-eastern Australia are predicted to experience rapid and extreme changes in rainfall patterns, temperatures and wild fires. To investigate the influence of environmental drivers on seasonal and inter-annual variation of soil-atmosphere CH4 exchange, we measured soil-atmosphere CH4 exchange at high-temporal resolution (< 2 h) in a dry temperate eucalypt forest in Victoria (Wombat State Forest, precipitation 870 mm yr-1) and in a wet temperature eucalypt forest in Tasmania (Warra Long-Term Ecological Research site, 1700 mm yr-1). Both forest soil systems were continuous CH4 sinks of -1.79 kg CH4 ha-1 yr-1 in Victoria and -3.83 kg CH4 ha-1 yr-1 in Tasmania. Soil CH4 uptake showed substantial temporal variation and was strongly controlled by soil moisture at both forest sites. Soil CH4 uptake increased when soil moisture decreased and this relationship explained up to 90 % of the temporal variability. Furthermore, the relationship between soil moisture and soil CH4 flux was near-identical at both forest sites when soil moisture was expressed as soil air-filled porosity (AFP). Soil temperature only had a minor influence on soil CH4 uptake. Soil nitrogen concentrations were generally low and fluctuations in nitrogen availability did not influence soil CH4 uptake at either forest site. Our data suggest that soil MOB activity in the two forests was similar and that differences in soil CH4 exchange between the two forests were related to differences in soil moisture and thereby soil gas diffusivity. The differences between forest sites and the variation in soil CH4 exchange over time could be explained by soil AFP as an indicator of soil moisture status.

Isotopic patterns in caps and stipes in sporocarps reveal patterns of organic nitrogen use by ectomycorrhizal fungi

NASA Astrophysics Data System (ADS)

Hobbie, Erik; Ouimette, Andrew; Chen, Janet

2016-04-01

Current ecosystem models use inorganic nitrogen as the currency of nitrogen acquisition by plants. However, many trees may gain access to otherwise unavailable soil resources, such as soil organic nitrogen, through their symbioses with ectomycorrhizal fungi, and this pathway of nitrogen acquisition may therefore be important in understanding plant responses to environmental change. Different functional groups of ectomycorrhizal fungi vary in their ability to enzymatically access protein and other soil resources. Such fungal parameters as hyphal hydrophobicity, the presence of rhizomorphs (long-distance transport structures), and exploration strategies (e.g., short-distance versus long-distance, mat formation) correspond with how fungi interact with and explore the environment, and the proportions of different exploration types present will shift along environmental gradients such as nitrogen availability. Isotopic differences between caps and stipes may provide a means to test for organic nitrogen use, since caps and stipes differ in δ13C and δ15N as a result of variable proportions of protein and other classes of compounds, and protein should differ isotopically among de novo synthesis, litter sources, and soil sources. Here, we propose that (1) isotopic differences between caps and stipes could be related to organic nitrogen uptake and to the δ13C and δ15N values of different pools of soil-derived or de novo-synthesized amino acids; (2) these isotopic differences will reflect greater acquisition of soil-derived organic nitrogen by exploration types of greater enzymatic capabilities to degrade recalcitrant nitrogen forms, specifically long-distance, medium-distance fringe, and medium-distance mat exploration types. To test these hypotheses, we use a dataset of isotopic values, %N, and %C in 208 cap/stipe samples collected from Oregon, western USA. δ13C differences in caps and stipes in a multiple regression model had an adjusted r2 of 0.292 (p < 0.0001), and were explained best by exploration type (45% of explained variance), the interaction of exploration type and %Ncap-stipe (20%), the interaction of exploration type and %Ncap/stipe (22%), %Ccap-stipe (8%), and %Ncap-stipe (5%). δ15N differences between caps and stipes in a multiple regression model had an adjusted r2 of 0.486 (p < 0.0001), and were explained best by exploration type (47% of explained variance), the interaction of exploration type and %Ncap-stipe (26%), the interaction of exploration type and %Ncap/stipe (14%), %Ncap/stipe (11%),and %Ccap-stipe (2%). We argue that these differences in the 13C and 15N enrichment of caps relative to stipes reflect not only shifts in the proportions of protein and carbohydrates, but also differences in the extent of fluxes and the δ13C and δ15N signatures of soil- and litter-derived organic nitrogen taken up by these fungi. We also propose equations to quantify this uptake. Organic nitrogen from litter (lower δ13C and δ15N) may be incorporated by medium-distance mat, short-distance, and contact exploration types of ectomycorrhizal fungi, whereas long-distance and medium-distance fringe exploration types appeared to incorporate deeper soil organic nitrogen.

Carbonyl sulfide (OCS) as a proxy for GPP: Complications derived from studies on the impact of CO2, soil humidity and sterilization on the OCS exchange between soils and atmosphere

NASA Astrophysics Data System (ADS)

Bunk, Rüdiger; Behrendt, Thomas; Yi, Zhigang; Kesselmeier, Jürgen

2016-04-01

Carbonyl sulfide is discussed to be used as a proxy for gross primary productivity (GPP) of forest ecosystems. However, soils may interfere. Soils play an important role in budgeting global and local carbonyl sulfide (OCS) fluxes, yet the available data on the uptake and emission behavior of soils in conjunction with environmental factors is limited. The work of many authors has shown that the OCS exchange of soils depends on various factors, such as soil type, atmospheric OCS concentrations, temperature or soil water content (Kesselmeier et al., J. Geophys. Res., 104, No. D9, 11577-11584, 1999; Van Diest & Kesselmeier, Biogeosciences, 5, 475-483, 2008; Masyek et al., PNAS, 111, No 25, 9064-9069, doi: 10.1073/pnas.1319132111, 2014; Whelan and Rhew, J. Geophys. Res. Biogeosciences., 120, 54-62, doi: 10.1002/2014JG002661, 2015) and the light dependent and obviously abiotic OCS production as reported by Whelan and Rhew (2015). To get a better constraint on the impact of some environmental factors on the OCS exchange of soils we used a new laser based integrated cavity output spectroscopy instrument (LGR COS/CO Analyzer Model 907-0028, Los Gatos, Mountain View, California, USA) in conjunction with an automated soil chamber system (as described in Behrendt et al, Biogeosciences, 11, 5463-5492, doi: 10.5194/bg-11-5463-2014, 2014). The OCS exchange of various soils under the full range of possible soil humidity and various CO2 mixing ratios was examined. Additionally OCS exchange of chloroform sterilized subsamples was compared to their live counterparts to illuminate the influence of microorganisms. Results were quite heterogeneous between different soils. With few exceptions, all examined soils show dependence between OCS exchange and soil humidity, usually with strongest uptake at a certain humidity range and less uptake or even emission at higher and lower humidity. Differences in CO2 mixing ratio also clearly impacts on OCS exchange, but trends for different soils vary strongly. One arable soil from organic farming even showed a trend directly opposed to the other arable soils examined. We interpret the heterogeneity in reaction of soils to different soil humidity and CO2 mixing ratios as related to activity of different microbiological communities within the soils. Preliminary experiments with sterilization agents that preferably act again bacteria (streptomycin) or fungi (nystatin) indicate that fungi might have played the dominant biotic role in the soils examined. These complex interactions will affect the exchange of OCS between forest ecosystems and the atmosphere and may hinder the use of this compound to catch GPP in a more CO2 independent way.

Impact of FGD gypsum on soil fertility and plant nutrient uptake

USDA-ARS?s Scientific Manuscript database

Use of FGD gypsum is thought to improve soil productivity and increase plant production. Thus, a study was conducted to evaluate the effects of FGD gypsum on yield, plant nutrient uptake and soil productivity. The study was conducted on an established bermudagrass pasture. Poultry litter was applied...

Heavy metals in soils and crops in Southeast Asia. 1. Peninsular Malaysia.

PubMed

Zarcinas, Bernhard A; Ishak, Che Fauziah; McLaughlin, Mike J; Cozens, Gill

2004-12-01

In a reconnaisance soil geochemical and plant survey undertaken to study the heavy metal uptake by major food crops in Malaysia, 241 soils were analysed for cation exchange capacity (CEC), organic carbon (C), pH, electrical conductivity (EC) and available phosphorus (P) using appropriate procedures. These soils were also analysed for arsenic (As), cadmium (Cd), cobalt (Co), chromium (Cr), copper (Cu), mercury (Hg), nickel (Ni), lead (Pb) and zinc (Zn) using aqua regia digestion, together with 180 plant samples using nitric acid digestion. Regression analysis between the edible plant part and aqua regia soluble soil As, Cd, Cr, Cu, Hg, Ni, Pb and Zn concentrations sampled throughout Peninsular Malaysia, indicated a positive relationship for Pb in all the plants sampled in the survey (R2 = 0.195, p < 0.001), for Ni in corn (R2 = 0.649, p < 0.005), for Cu in chili (R2 = 0.344, p < 0.010) and for Zn in chili (R2 = 0.501, p < 0.001). Principal component analysis of the soil data suggested that concentrations of Co, Ni, Pb and Zn were strongly correlated with concentrations of Al and Fe, which is suggestive of evidence of background variations due to changes in soil mineralogy. Thus the evidence for widespread contamination of soils by these elements through agricultural activities is not strong. Chromium was correlated with soil pH and EC, Na, S, and Ca while Hg was not correlated with any of these components, suggesting diffuse pollution by aerial deposition. However As, Cd, Cu were strongly associated with organic matter and available and aqua regia soluble soil P, which we attribute to inputs in agricultural fertilisers and soil organic amendments (e.g. manures, composts).

Achilles heel of environmental risk from recycling of sludge to soil as amendment: A summary in recent ten years (2007-2016).

PubMed

Liu, Hong-Tao

2016-10-01

Recycling sludge as a soil amendment has both positive and negative effects because of its enrichment in both nutrients and contaminants. So far, the negative effect has to be extensively investigated that the severities of different types of contaminants also remain unclear. The environmental behavior and risk of organic contaminant and pharmaceuticals, heavy metal and salt as well as pathogenic microorganisms brought by sludge amendment are summarized and discussed here. Organic contaminants and pharmaceuticals are typically found at low concentrations in sludge, the risks from sludge-amended soil decrease over time owing to its biodegradability. On the other hand, application of sludge generally increases soil salinity, which may cause physiological damage to plants grown in sludge-amended soil. In some extent, this negative effect can be alleviated by means of dilution; however, greater attention should be paid to long term increasing possible risk of eutrophication. Heavy metal (particularly of mobile heavy metals, such as Cd) with high concentrations in sludge and soil receiving considerable sludge can cause its incremental abundance in soil and crop contamination, further posing risks to humans, but most cases showed that there remained not excessive in heavy metal caused by sludge amendment. It is worth noting that increasing soil organic matter content may reduce transfer of heavy metal from soil to crops, but not restrict its uptake by crops at all. Combined literature together, it is summarized that heavy metal becomes a relatively severe bottleneck in recycling of sludge as soil amendment due to its non-biodegradability and potential damage to health by adventuring contamination from agricultural products. Particular attention should therefore be paid to long term monitoring the change of heavy metals concentration in sludge amended soil. Copyright © 2016 Elsevier Ltd. All rights reserved.

Immobilization and phytotoxicity of chromium in contaminated soil remediated by CMC-stabilized nZVI.

PubMed

Wang, Yu; Fang, Zhanqiang; Kang, Yuan; Tsang, Eric Pokeung

2014-06-30

The toxic effect of Cr(VI)-contaminated soil remediated by sodium carboxymethyl cellulose stabilized nanoscale zero-valent iron (CMC-stabilized nZVI) was assessed through in vitro toxicity and phytotoxicity tests. In vitro tests showed that 0.09 g L(-1) of Fe(0) nanoparticles (soil-to-solution ratio was 1 g:5 mL) significantly reduced the toxicity characteristic leaching procedure (TCLP) leachability and physiological based extraction test (PBET) bioaccessibility of Cr by 82% and 58%, respectively. Sequential extraction procedures (SEP) revealed that exchangeable (EX) Cr was completely converted to Fe-Mn oxides (OX) and organic matter (OM). Accordingly, phytotoxicity tests indicated that after 72-h remediation, Cr uptakes by edible rape and Chinese cabbage were suppressed by 61% and 36%, respectively. Moreover, no significant increase in Cr uptake was observed for either species after a 1-month static period for the amended soil. Regarding Fe absorption, germination and seedling growth, both plant species were significantly affected by CMC-nZVI-exposed soils. However, similar phytotoxicity tests conducted after 1 month showed an improvement in cultivation for both plants. Overall, this study demonstrated that CMC-nZVI could significantly enhance Cr immobilization, which reduced its leachability, bioavailability and bioaccumulation by plants. From a detoxification perspective, such remediation is technologically feasible and shows great potential in field applications. Copyright © 2014 Elsevier B.V. All rights reserved.

Contrasting Effects of Cattle Manure Applications and Root-Induced Changes on Heavy Metal Dynamics in the Rhizosphere of Soybean in an Acidic Haplic Fluvisol: A Chronological Pot Experiment.

PubMed

Chu, Qingnan; Sha, Zhimin; Osaki, Mitsuru; Watanabe, Toshihiro

2017-04-19

To characterize the dynamic mobilization of heavy metals (HM) in a crop-soil system affected by cattle manure (CM) application, soybean [Glycine max L. Merr. cv. Toyoharuka] crops were exposed in a chronological pot experiment to three CM application rates and sampled at two vegetative stages and two reproductive stages. A sequential extraction procedure for metal fractionation, soil pH, microbial activity, and plant HM uptake was determined. In non-rhizopshere soil, with CM application a liming effect was detected, and increased microbial activity was detected at the reproductive stage. CM application shifted Cd from available state to oxide-bound pool in non-rhizosphere soil; however, shifts in Cd from an oxide-bound pool to the available state were observed in rhizosphere soil. CM application stabilized the available Zn and Pb to oxide-bound Zn and organic-bound Pb in both non-rhizosphere and rhizosphere soils, and the stabilizing degree increased with higher CM application rates. The promoted Zn immobilization in the rhizosphere was due to the liming effects induced by added CM that counteracted the root-induced acidification. On the basis of a stepwise multiple regression analysis, the shift of Cd and Pb fractionation was mainly related to microbial activity. Adding manure inhibited Zn and Pb uptake but promoted Cd uptake by soybean, and a greater influence was detected at the reproductive stage, at which CM application increased the root Cd-absorbing power but did not significantly affect the Zn- and Pb-absorbing powers. In an agricultural context, long-term CM application, even at the recommended rate of 10.13 Mg ha -1 , may cause a soybean Zn deficiency and high Pb accumulation in Haplic Fluvisols, although CM is often considered as an environmentally friendly fertilizer.

Effect of water regimes and organic matters on transport of arsenic in summer rice (Oryza sativa L.).

PubMed

Rahaman, Sefaur; Sinha, Ashim Chandra; Mukhopadhyay, Dibyendu

2011-01-01

The arsenic contamination in soil-water-plant systems is a major concern of where, the groundwater is being contaminated with arsenic (above 0.01 mg/L) in the Indian subcontinent. The study was conducted with organic matter to find out the reducing effect on arsenic load to rice (cv. Khitish). It was observed that intermittent ponding reduced arsenic uptake (23.33% in root, 13.84% in shoot and 19.84% in leaf) at panicle initiation stage, instead of continuous ponding. A decreasing trend of arsenic accumulation (root > straw > husk > whole grain > milled grain) was observed in different plant parts at harvest. Combined applications of lathyrus + vermicompost + poultry manure reduced arsenic transport in plant parts (root, straw, husk, whole grains and milled grain) which was significantly at par (p > 0.05) with chopped rice straw (5 tons/ha) + lathyrus green manuring (5 tons/ha) in comparison to control and corresponding soils. A significant negative correlation of arsenic with phosphorus (grain P with arsenic in different parts R2= 0.627-0.726 at p > 0.01) was observed. Similarly, soil arsenic had a negative correlation with soil available phosphorus (R2 = 0.822 at p > 0.001) followed by soil nitrogen (R2 = 0.762 at p > 0.01) and soil potassium (R2 = 0.626 at p > 0.01). Hence, effective management of contaminated irrigation water along with organic matter could reduce the arsenic build up to plants and soil.

Use of nutrient supplements to increase the microbial degradation of PAH in contaminated soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carmichael, L.M.; Pfaender, F.K.

1994-12-31

The microbial degradation of polycyclic aromatic hydrocarbons (PAH) is often low in soils due to unavailability of PAH and/or to conditions in the soil that are not favorable to microbial activity. As a result, successful bioremediation of PAH contaminated soils may require the addition of supplements to impact PAH availability or soil conditions. This paper reports on the addition of supplements (Triton X-100, Inopol, nutrient buffer, an organic nutrient solution, salicylic acid) on the fate of (9-{sup 14}C) phenanthrene, a model PAH, in creosote contaminated soils. Phenanthrene metabolism was assessed using a mass balance approach that accounts for metabolism ofmore » phenanthrene to CO{sub 2}, relative metabolite production, and uptake of phenanthrene into cells. Most of the supplements did not drastically alter the fate of phenanthrene in the contaminated soils. Additions of Inopol, however, increased phenanthrene mineralization, while salicylic acid decreased phenanthrene mineralization but greatly increased the production of polar and water soluble metabolites. All supplements (excluding salicylic acid and the organic nutrient solution) increased populations of heterotrophic microorganisms, as measured by plate counts. Phenanthrene degrader populations, however, were only slightly increased by additions of the nutrient buffer, as measured by the Most Probable Number assay.« less

Low-molecular-weight organic acids correlate with cultivar variation in ciprofloxacin accumulation in Brassica parachinensis L.

PubMed

Zhao, Hai-Ming; Xiang, Lei; Wu, Xiao-Lian; Jiang, Yuan-Neng; Li, Hui; Li, Yan-Wen; Cai, Quan-Ying; Mo, Ce-Hui; Liu, Jie-Sheng; Wong, Ming-Hung

2017-08-31

To understand the mechanism controlling cultivar differences in the accumulation of ciprofloxacin (CIP) in Chinese flowering cabbage (Brassica parachinensis L.), low-molecular-weight organic acids (LMWOAs) secreted from the roots of high- and low-CIP cultivars (Sijiu and Cutai, respectively) and their effects on the bioavailability of CIP in soil were investigated. Significant differences in the content of LMWOAs (especially maleic acid) between the two cultivars played a key role in the variation in CIP accumulation. Based on the Freundlich sorption coefficient (K f ) and distribution coefficient (K d ), the presence of LMWOAs reduced the CIP sorption onto soil particles, and higher concentrations of LMWOAs led to less CIP sorption onto soil. On the other hand, LMWOAs enhanced CIP desorption by lowering the solution pH, which changed the surface charge of soil particles and the degree of CIP ionization. LMWOAs promoted CIP desorption from soil by breaking cation bridges and dissolving metal cations, particularly Cu 2+ . These results implied that the LMWOAs (mainly maleic acid) secreted from Sijiu inhibited CIP sorption onto soil and improved CIP desorption from soil to a greater extent than those secreted from Cutai, resulting in higher bioavailability of CIP and more uptake and accumulation of CIP in the former.

Uptake and retention of radio-caesium in earthworms cultured in soil contaminated by the Fukushima nuclear power plant accident.

PubMed

Fujiwara, K; Takahashi, T; Nguyen, P; Kubota, Y; Gamou, S; Sakurai, S; Takahashi, S

2015-01-01

To understand the effects of radionuclides on non-human biota and the environment, it is essential to study the intake and metabolism of radio-isotopes in earthworms which are among the most important soil organisms, and Eisenia fetida, which were used in this study, are known to be sufficiently sensitive to chemicals and representative of common earthworms. In this study, we assessed the concentration ratios, uptake and retention, absorbed dose rate, and distribution of radio-caesium in earthworms. The concentration ratios of (137)Cs (i.e., the concentrations of radio-caesium in earthworms relative to those in dry soil) were higher early in the culturing period and decreased gradually over the experimental period. (137)Cs taken up by E. fetida was cleared rapidly after the worms were cultured in radio-caesium-free soil, suggesting that the metabolism of radio-caesium in earthworms is very rapid. Autoradiography demonstrated that the concentration of radio-caesium within the digestive tract was as high as that in the soil, while radio-caesium in the body tissue was lower than radio-caesium in the soil and was almost uniformly distributed among earthworm tissues. The highest absorbed dose rate of total exposure to radio-caesium ((137)Cs + (134)Cs) was calculated to be 1.9 × 10(3) (μGy/day) in the earthworms. Copyright © 2014 Elsevier Ltd. All rights reserved.

Effects of arbuscular mycorrhizae on tomato yield, nutrient uptake, water relations, and soil carbon dynamics under deficit irrigation in field conditions.

PubMed

Bowles, Timothy M; Barrios-Masias, Felipe H; Carlisle, Eli A; Cavagnaro, Timothy R; Jackson, Louise E

2016-10-01

Plant strategies to cope with future droughts may be enhanced by associations between roots and soil microorganisms, including arbuscular mycorrhizal (AM) fungi. But how AM fungi affect crop growth and yield, together with plant physiology and soil carbon (C) dynamics, under water stress in actual field conditions is not well understood. The well-characterized mycorrhizal tomato (Solanum lycopersicum L.) genotype 76R (referred to as MYC+) and the mutant nonmycorrhizal tomato genotype rmc were grown in an organic farm with a deficit irrigation regime and control regime that replaced evapotranspiration. AM increased marketable tomato yields by ~25% in both irrigation regimes but did not affect shoot biomass. In both irrigation regimes, MYC+ plants had higher plant nitrogen (N) and phosphorus (P) concentrations (e.g. 5 and 24% higher N and P concentrations in leaves at fruit set, respectively), 8% higher stomatal conductance (gs), 7% higher photosynthetic rates (Pn), and greater fruit set. Stem water potential and leaf relative water content were similar in both genotypes within each irrigation regime. Three-fold higher rates of root sap exudation in detopped MYC+ plants suggest greater capacity for water uptake through osmotic driven flow, especially in the deficit irrigation regime in which root sap exudation in rmc was nearly absent. Soil with MYC+ plants also had slightly higher soil extractable organic C and microbial biomass C at anthesis but no changes in soil CO2 emissions, although the latter were 23% lower under deficit irrigation. This study provides novel, field-based evidence for how indigenous AM fungi increase crop yield and crop water use efficiency during a season-long deficit irrigation and thus play an important role in coping with increasingly limited water availability in the future. Copyright © 2016 Elsevier B.V. All rights reserved.

Mechanisms of thorium migration in a semiarid soil.

PubMed

Bednar, A J; Gent, D B; Gilmore, J R; Sturgis, T C; Larson, S L

2004-01-01

Thorium concentrations at Kirtland Air Force Base training sites in Albuquerque, NM, have been previously described; however, the mechanisms of thorium migration were not fully understood. This work describes the processes affecting thorium mobility in this semiarid soil, which has implications for future remedial action. Aqueous extraction and filtration experiments have demonstrated the colloidal nature of thorium in the soil, due in part to the low solubility of thorium oxide. Colloidal material was defined as that removed by a 0.22-microm or smaller filter after being filtered to nominally dissolved size (0.45 microm). Additionally, association of thorium with natural organic matter is suggested by micro- and ultrafiltration methods, and electrokinetic data, which indicate thorium migration as a negatively charged particle or anionic complex with organic matter. Soil fractionation and digestion experiments show a bimodal distribution of thorium in the largest and smallest size fractions, most likely associated with detrital plant material and inorganic oxide particles, respectively. Plant uptake studies suggest this could also be a mode of thorium migration as plants grown in thorium-containing soil had a higher thorium concentration than those in control soils. Soil erosion laboratory experiments with wind and surface water overflow were performed to determine bulk soil material movement as a possible mechanism of mobility. Information from these experiments is being used to determine viable soil stabilization techniques at the site to maintain a usable training facility with minimal environmental impact.

Relationships between stability, maturity, water-extractable organic matter of municipal sewage sludge composts and soil functionality.

PubMed

Sciubba, Luigi; Cavani, Luciano; Grigatti, Marco; Ciavatta, Claudio; Marzadori, Claudio

2015-09-01

Compost capability of restoring or enhancing soil quality depends on several parameters, such as soil characteristics, compost carbon, nitrogen and other nutrient content, heavy metal occurrence, stability and maturity. This study investigated the possibility of relating compost stability and maturity to water-extractable organic matter (WEOM) properties and amendment effect on soil quality. Three composts from municipal sewage sludge and rice husk (AN, from anaerobic wastewater treatment plants; AE, from aerobic ones; MIX, from both anaerobic and aerobic ones) have been analysed and compared to a traditional green waste compost (GM, from green manure, solid waste and urban sewage sludge). To this aim, WEOMs were characterized through chemical analysis; furthermore, compost stability was evaluated through oxygen uptake rate calculation and maturity was estimated through germination index determination, whereas compost impact on soil fertility was studied, in a lab-scale experiment, through indicators as inorganic nitrogen release, soil microbial biomass carbon, basal respiration rate and fluorescein di-acetate hydrolysis. The obtained results indicated that WEOM characterization could be useful to investigate compost stability (which is related to protein and phenol concentrations) and maturity (related to nitrate/ammonium ratio and degree of aromaticity) and then compost impact on soil functionality. Indeed, compost stability resulted inversely related to soil microbial biomass, basal respiration rate and fluorescein di-acetate hydrolysis when the products were applied to the soil.

Can liming reduce cadmium (Cd) accumulation in rice (Oryza sativa) in slightly acidic soils? A contradictory dynamic equilibrium between Cd uptake capacity of roots and Cd immobilisation in soils.

PubMed

Yang, Yongjie; Chen, Jiangmin; Huang, Qina; Tang, Shaoqing; Wang, Jianlong; Hu, Peisong; Shao, Guosheng

2018-02-01

Cadmium (Cd) accumulation in rice is strongly controlled by liming, but information on the use of liming to control Cd accumulation in rice grown in slightly acidic soils is inconsistent. Here, pot experiments were carried out to investigate the mechanisms of liming on Cd accumulation in two rice varieties focusing on two aspects: available/exchangeable Cd content in soils that were highly responsive to liming, and Cd uptake and transport capacity in the roots of rice in terms of Cd accumulation-relative gene expression. The results showed that soil availability and exchangeable iron, manganese, zinc and Cd contents decreased with increased liming, and that genes related to Cd uptake (OsNramp5 and OsIRT1) were sharply up-regulated in the roots of the two rice varieties. Thus, iron, manganese, zinc and Cd contents in rice plants increased under low liming applications but decreased in response to high liming applications. However, yield and rice quantities were only slightly affected. These results indicated that Cd accumulation in rice grown in slightly acidic soils presents a contradictory dynamic equilibrium between Cd uptake capacity by roots and soil Cd immobilisation in response to liming. The enhanced Cd uptake capacity under low liming dosages increases risks to human health. Copyright © 2017 Elsevier Ltd. All rights reserved.

Modeling forest development after fire disturbance: Climate, soil organic layer, and nitrogen jointly affect forest canopy species and long-term ecosystem carbon accumulation in the North American boreal forest

NASA Astrophysics Data System (ADS)

Trugman, A. T.; Fenton, N.; Bergeron, Y.; Xu, X.; Welp, L.; Medvigy, D.

2015-12-01

Soil organic layer dynamics strongly affect boreal forest development after fire. Field studies show that soil organic layer thickness exerts a species-specific control on propagule establishment in the North American boreal forest. On organic soils thicker than a few centimeters, all propagules are less able to recruit, but broadleaf trees recruit less effectively than needleleaf trees. In turn, forest growth controls organic layer accumulation through modulating litter input and litter quality. These dynamics have not been fully incorporated into models, but may be essential for accurate projections of ecosystem carbon storage. Here, we develop a data-constrained model for understanding boreal forest development after fire. We update the ED2 model to include new aspen and black spruce species-types, species-specific propagule survivorship dependent on soil organic layer depth, species-specific litter decay rates, dynamically accumulating moss and soil organic layers, and nitrogen fixation by cyanobacteria associated with moss. The model is validated against diverse observations ranging from monthly to centennial timescales and spanning a climate gradient in Alaska, central Canada, and Quebec. We then quantify differences in forest development that result from changes in organic layer accumulation, temperature, and nitrogen. We find that (1) the model accurately reproduces a range of observations throughout the North American boreal forest; (2) the presence of a thick organic layer results in decreased decomposition and decreased aboveground productivity, effects that can increase or decrease ecosystem carbon uptake depending on location-specific attributes; (3) with a mean warming of 4°C, some forests switch from undergoing succession to needleleaf forests to recruiting multiple cohorts of broadleaf trees, decreasing ecosystem accumulation by ~30% after 300 years; (4) the availability of nitrogen regulates successional dynamics such than broadleaf species are less able to compete with needleleaf trees under low nitrogen regimes. We conclude that a joint regulation between the soil organic layer, temperature, and nitrogen will likely play an important role in influencing boreal forests development after fire in future climates, and should be represented in models.

Streptomyces pactum assisted phytoremediation in Zn/Pb smelter contaminated soil of Feng County and its impact on enzymatic activities

PubMed Central

Ali, Amjad; Guo, Di; Mahar, Amanullah; Ma, Fang; Li, Ronghua; Shen, Feng; Wang, Ping; Zhang, Zengqiang

2017-01-01

Anthropogenic activities, such as industrial expansion, smelting, mining and agricultural practices, have intensified the discharge of potentially toxic trace elements (PTEs) into the environment, threatening human health and other organisms. To assist phytoremediation by sorghum in soil contaminated by smelters/mines in Feng County (FC), a pot experiment was performed to examine the phytoremediation potential of Streptomyces pactum (Act12) + biochar. The results showed that root uptake of Zn and Cd was reduced by 45 and 22%, respectively, while the uptake of Pb and Cu increased by 17 and 47%, respectively. The shoot and root dry weight and chlorophyll content improved after Act12 inoculation. β-glucosidase, alkaline phosphatase and urease activities in soil improved and antioxidant activities (POD, PAL, PPO) decreased after application of Act12 + biochar due to a reduction in stress from PTEs. BCF, TF and MEA confirmed the role of Act12 in the amelioration and translocation of PTEs. PCA analysis showed a correlation between different factors that affect the translocation of PTEs. Overall, Act12 promoted the phytoremediation of PTEs. Field experiments on Act12 + biochar may provide new insights into the rehabilitation and restoration of soils contaminated by mines. PMID:28387235

Phytoextraction of soil trace elements by willow during a phytoremediation trial in Southern Québec, Canada.

PubMed

Courchesne, François; Turmel, Marie-Claude; Cloutier-Hurteau, Benoît; Constantineau, Simon; Munro, Lara; Labrecque, Michel

2017-06-03

The phytoextraction of the trace elements (TEs) As, Cd, Cu, Ni, Pb, and Zn by willow cultivars (Fish Creek, SV1 and SX67) was measured during a 3-year field trial in a mildly contaminated soil. Biomass ranged from 2.8 to 4.4 Mg/ha/year at 30,000 plants/ha. Shoots (62%) were the main component followed by leaves (23%) and roots (15%). Biomass was positively linked to soluble soil dissolved organic carbon, K, and Mg, while TEs, not Cd and Zn, had a negative effect. The TE concentration ranking was: Zn > Cu > Cd > Ni, Pb > As, and distribution patterns were: (i) minima in shoots (As, Ni), (ii) maxima in leaves (Cd, Zn), or (iii) maxima in roots (Cu, Pb). Correlations between soil and plant TE were significant for the six TEs in roots. The amounts extracted were at a maximum for Zn, whereas Fish Creek and SV1 extracted more TE than SX67. More than 60% (91-94% for Cd and Zn) of the total TE was in the aboveground parts. Uptake increased with time because of higher biomass. Fertilization, the selection of cultivars, and the use of complementary plants are required to improve productivity and Cd and Zn uptake.

Streptomyces pactum assisted phytoremediation in Zn/Pb smelter contaminated soil of Feng County and its impact on enzymatic activities

NASA Astrophysics Data System (ADS)

Ali, Amjad; Guo, Di; Mahar, Amanullah; Ma, Fang; Li, Ronghua; Shen, Feng; Wang, Ping; Zhang, Zengqiang

2017-04-01

Anthropogenic activities, such as industrial expansion, smelting, mining and agricultural practices, have intensified the discharge of potentially toxic trace elements (PTEs) into the environment, threatening human health and other organisms. To assist phytoremediation by sorghum in soil contaminated by smelters/mines in Feng County (FC), a pot experiment was performed to examine the phytoremediation potential of Streptomyces pactum (Act12) + biochar. The results showed that root uptake of Zn and Cd was reduced by 45 and 22%, respectively, while the uptake of Pb and Cu increased by 17 and 47%, respectively. The shoot and root dry weight and chlorophyll content improved after Act12 inoculation. β-glucosidase, alkaline phosphatase and urease activities in soil improved and antioxidant activities (POD, PAL, PPO) decreased after application of Act12 + biochar due to a reduction in stress from PTEs. BCF, TF and MEA confirmed the role of Act12 in the amelioration and translocation of PTEs. PCA analysis showed a correlation between different factors that affect the translocation of PTEs. Overall, Act12 promoted the phytoremediation of PTEs. Field experiments on Act12 + biochar may provide new insights into the rehabilitation and restoration of soils contaminated by mines.

Quantifying the role of vegetation in controlling the time-variant age of evapotranspiration, soil water and stream flow

NASA Astrophysics Data System (ADS)

Smith, A.; Tetzlaff, D.; Soulsby, C.

2017-12-01

Identifying the sources of water which sustain plant water uptake is an essential prerequisite to understanding the interactions of vegetation and water within the critical zone. Estimating the sources of root-water uptake is complicated by ecohydrological separation, or the notion of "two-water worlds" which distinguishes more mobile and immobile water sources which respectively sustain streamflow and evapotranspiration. Water mobility within the soil determines both the transit time/residence time of water through/in soils and the subsequent age of root-uptake and xylem water. We used time-variant StorAge Selection (SAS) functions to conceptualise the transit/residence times in the critical zone using a dual-storage soil column differentiating gravity (mobile) and tension dependent (immobile) water, calibrated to measured stable isotope signatures of soil water. Storage-discharge relationships [Brutsaert and Nieber, 1977] were used to identify gravity and tension dependent storages. A temporally variable distribution for root water uptake was identified using simulated stable isotopes in xylem and soil water. Composition of δ2H and δ18O was measured in soil water at 4 depths (5, 10, 15, and 20 cm) on 10 occasions, and 5 times for xylem water within the dominant heather (Calluna sp. and Erica sp.) vegetation in a Scottish Highland catchment over a two-year period. Within a 50 cm soil column, we found that more than 53% of the total stored water was water that was present before the start of the simulation. Mean residence times of the mobile water in the upper 20 cm of the soil were 16, 25, 36, and 44 days, respectively. Mean evaporation transit time varied between 9 and 40 days, driven by seasonal changes and precipitation events. Lastly, mean transit times of xylem water ranged between 95-205 days, driven by changes in soil moisture. During low soil moisture (i.e. lower than mean soil moisture), root-uptake was from lower depths, while higher than mean soil moisture showed preferential uptake of near surface water. In our humid, low energy environment, we found that xylem water is comprised of both mobile and immobile water. The division of soil storage into two storages, gravity and tension dependent, has shown potential to identify the sources of plant water and vegetation and soil water interactions.

Humic substances biological activity at the plant-soil interface

PubMed Central

Trevisan, Sara; Francioso, Ornella; Nardi, Serenella

2010-01-01

Humic substances (HS) represent the organic material mainly widespread in nature. HS have positive effects on plant physiology by improving soil structure and fertility and by influencing nutrient uptake and root architecture. The biochemical and molecular mechanisms underlying these events are only partially known. HS have been shown to contain auxin and an “auxin-like” activity of humic substances has been proposed, but support to this hypothesis is fragmentary. In this review article, we are giving an overview of available data concerning molecular structures and biological activities of humic substances, with special emphasis on their hormone-like activities. PMID:20495384

Modelling bioaccumulation of semi-volatile organic compounds (SOCs) from air in plants based on allometric principles.

PubMed

Steyaert, Nils L L; Hauck, Mara; Van Hulle, Stijn W H; Hendriks, A Jan

2009-10-01

A model was developed for gaseous plant-air exchange of semi-volatile organic compounds. Based on previous soil-plant modelling, uptake and elimination kinetics were scaled as a function of plant mass and octanol-air partition ratios. Exchange of chemicals was assumed to be limited by resistances encountered during diffusion through a laminar boundary layer of air and permeation through the cuticle of the leaf. The uptake rate constant increased and the elimination rate constant decreased with the octanol-air partition ratio both apparently levelling off at high values. Differences in kinetics between species could be explained by their masses. Validation on independent data showed that bio-concentration factors of PCBs, chlorobenzenes and other chemicals were predicted well by the model. For pesticides, polycyclic aromatic hydrocarbons and dioxins deviations occurred.

Fate and Uptake of Pharmaceuticals in Soil–Plant Systems

PubMed Central

2014-01-01

Pharmaceuticals have been detected in the soil environment where there is the potential for uptake into crops. This study explored the fate and uptake of pharmaceuticals (carbamazepine, diclofenac, fluoxetine, propranolol, sulfamethazine) and a personal care product (triclosan) in soil–plant systems using radish (Raphanus sativus) and ryegrass (Lolium perenne). Five of the six chemicals were detected in plant tissue. Carbamazepine was taken up to the greatest extent in both the radish (52 μg/g) and ryegrass (33 μg/g), whereas sulfamethazine uptake was below the limit of quantitation (LOQ) (<0.01 μg/g). In the soil, concentrations of diclofenac and sulfamethazine dropped below the LOQ after 7 days. However, all pharmaceuticals were still detectable in the pore water at the end of the experiment. The results demonstrate the ability of plant species to accumulate pharmaceuticals from soils with uptake apparently specific to both plant species and chemical. Results can be partly explained by the hydrophobicity and extent of ionization of each chemical in the soil. PMID:24405013

Silicon isotope fractionation in bamboo and its significance to the biogeochemical cycle of silicon

NASA Astrophysics Data System (ADS)

Ding, T. P.; Zhou, J. X.; Wan, D. F.; Chen, Z. Y.; Wang, C. Y.; Zhang, F.

2008-03-01

A systematic investigation on silica contents and silicon isotope compositions of bamboos was undertaken. Seven bamboo plants and related soils were collected from seven locations in China. The roots, stem, branch and leaves for each plant were sampled and their silica contents and silicon isotope compositions were determined. The silica contents and silicon isotope compositions of bulk and water-soluble fraction of soils were also measured. The silica contents of studied bamboo organs vary from 0.30% to 9.95%. Within bamboo plant the silica contents show an increasing trend from stem, through branch, to leaves. In bamboo roots the silica is exclusively in the endodermis cells, but in stem, branch and leaves, the silica is accumulated mainly in epidermal cells. The silicon isotope compositions of bamboos exhibit significant variation, from -2.3‰ to 1.8‰, and large and systematic silicon isotope fractionation was observed within each bamboo. The δ 30Si values decrease from roots to stem, but then increase from stem, through branch, to leaves. The ranges of δ 30Si values within each bamboo vary from 1.0‰ to 3.3‰. Considering the total range of silicon isotope composition in terrestrial samples is only 7‰, the observed silicon isotope variation in single bamboo is significant and remarkable. This kind of silicon isotope variation might be caused by isotope fractionation in a Rayleigh process when SiO 2 precipitated in stem, branches and leaves gradually from plant fluid. In this process the Si isotope fractionation factor between dissolved Si and precipitated Si in bamboo ( αpre-sol) is estimated to be 0.9981. However, other factors should be considered to explain the decrease of δ 30Si value from roots to stem, including larger ratio of dissolved H 4SiO 4 to precipitated SiO 2 in roots than in stem. There is a positive correlation between the δ 30Si values of water-soluble fractions in soils and those of bulk bamboos, indicating that the dissolved silicon in pore water and phytoliths in soil is the direct sources of silicon taken up by bamboo roots. A biochemical silicon isotope fractionation exists in process of silicon uptake by bamboo roots. Its silicon isotope fractionation factor ( αbam-wa) is estimated to be 0.9988. Considering the distribution patterns of SiO 2 contents and δ 30Si values among different bamboo organs, evapotranspiration may be the driving force for an upward flow of a silicon-bearing fluid and silica precipitation. Passive silicon uptake and transportation may be important for bamboo, although the role of active uptake of silicic acid by roots may not be neglected. The samples with relatively high δ 30Si values all grew in soils showing high content of organic materials. In contrast, the samples with relatively low δ 30Si values all grew in soil showing low content of organic materials. The silicon isotope composition of bamboo may reflect the local soil type and growth conditions. Our study suggests that bamboos may play an important role in global silicon cycle.

Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength.

PubMed

Haling, Rebecca E; Brown, Lawrie K; Bengough, A Glyn; Young, Iain M; Hallett, Paul D; White, Philip J; George, Timothy S

2013-09-01

Root hairs are a key trait for improving the acquisition of phosphorus (P) by plants. However, it is not known whether root hairs provide significant advantage for plant growth under combined soil stresses, particularly under conditions that are known to restrict root hair initiation or elongation (e.g. compacted or high-strength soils). To investigate this, the root growth and P uptake of root hair genotypes of barley, Hordeum vulgare L. (i.e. genotypes with and without root hairs), were assessed under combinations of P deficiency and high soil strength. Genotypes with root hairs were found to have an advantage for root penetration into high-strength layers relative to root hairless genotypes. In P-deficient soils, despite a 20% reduction in root hair length under high-strength conditions, genotypes with root hairs were also found to have an advantage for P uptake. However, in fertilized soils, root hairs conferred an advantage for P uptake in low-strength soil but not in high-strength soil. Improved root-soil contact, coupled with an increased supply of P to the root, may decrease the value of root hairs for P acquisition in high-strength, high-P soils. Nevertheless, this work demonstrates that root hairs are a valuable trait for plant growth and nutrient acquisition under combined soil stresses. Selecting plants with superior root hair traits is important for improving P uptake efficiency and hence the sustainability of agricultural systems.

Ameliorating Effects of Biochar Derived from Poultry Manure and White Clover Residues on Soil Nutrient Status and Plant growth Promotion - Greenhouse Experiments

PubMed Central

Abbasi, M. Kaleem; Anwar, Ahsan Ali

2015-01-01

Biochar application to agricultural soils is rapidly emerging as a new management strategy for its potential role in carbon sequestration, soil quality improvements, and plant growth promotion. The aim of our study was to investigate the effects of biochars derived from white clover residues and poultry manure on soil quality characteristics, growth and N accumulation in maize (Zea mays L.) and wheat (Triticum aestivum L.) grown in a loam soil under greenhouse conditions. Treatments comprised of: untreated control; mineral N fertilizer (urea N, UN) at the rate of 200, and 100 mg N kg-1, white clover residues biochar (WCRB), poultry manure biochar (PMB) at 30 Mg ha–1, and the possible combinations of WCRB+PMB (50:50), UN+WCRB (50:50), UN+PMB (50:50), and UN+WCRB+PMB (50:25:25). The treatments were arranged in a completely randomized design with three replications. Results indicated a significant increase in the growth and biomass production of maize and wheat supplemented with biochars alone or mixed with N fertilizer. Biochars treatments showed varying impact on plant growth depended upon the type of the biochar, and in general plant growth under PMB was significantly higher than that recorded under WCRB. The growth characteristics in the combined treatments (half biochar+half N) were either higher or equivalent to that recorded under full fertilizer N treatment (N200). The biochar treatments WCRB, PMB, and WCRB+PMB (50:50) increased maize shoot N by 18, 26 and 21%, respectively compared to the control while wheat shoot N did not show positive response. The N-uptake by maize treated with WCRB, PMB, and WCRB+PMB (50:50) was 54, 116, and 90 mg g-1 compared to the 33 mg g-1 in the control while the N-uptake by wheat was 41, 60, and 53 mg g-1 compared to 24 mg g-1 in the control. The mixed treatments (half biochar+half N) increased N-uptake by 2.3folds in maize and 1.7 to 2.5folds in wheat compared to the N100 showing increasing effect of biochar on N use efficiency of applied N. Post-harvest soil analysis indicated a significant increase in pH, organic matter, organic C, total N, C:N, and porosity (% pore space) by the added biochars while bulk density (BD) was significantly decreased. The organic matter content in the soil amended with biochars ranged between 19.5 and 23.2 g kg-1 compared to 11.7 and 10.2 g kg-1 in the control and N fertilizer treatments while the BD of biochars amended soils (WCRB, PMB, and WCRB+PMB) was 1.07, 1.17, and 1.11 g cm-3 compared to 1.28 g cm-1 in the control. In summary, the results of present study highlight the agronomic benefits of biochars in improving the quality of the soil, and promoting growth, yield and N accumulation of both maize and wheat with a consequent benefit to agriculture. PMID:26121057

Response of Sesbania grandiflora to Inoculation of Soil with Vesicular-Arbuscular Mycorrhizal Fungi.

PubMed

Habte, M; Aziz, T

1985-09-01

A greenhouse experiment was conducted to determine the influence of two tropical isolates of Glomus fasciculatum and Glomus mosseae on the nutrient uptake and growth of Sesbania grandiflora. Inoculation of sterile soil with the fungi significantly improved growth and nutrient uptake by S. grandiflora, but the response of the legume was markedly better when the soil was inoculated with G. fasciculatum than when it was inoculated with G. mosseae. Nutrient uptake and growth of S. grandiflora in nonsterile soil was also significantly stimulated by inoculation, but the legume did not respond differently to the two endophytes under this condition.

The influence of EDTA application on the interactions of cadmium, zinc, and lead and their uptake of rainbow pink (Dianthus chinensis).

PubMed

Lai, Hung-Yu; Chen, Zueng-Sang

2006-10-11

Soil used in this study was artificially contaminated with Cd, Zn, Pb, or applied in combinations (Cd-Zn, Cd-Pb, Zn-Pb, or Cd-Zn-Pb) to study the interactions of metals in soil contaminated with multiple metals. After planting rainbow pink (Dianthus chinensis) in these soils for 21 days, three different concentrations of ethylenedinitrilotetraacetic acid (EDTA) solutions were added to study the effect of applying EDTA on the interactions among these metals. The concentrations of Cd, Zn, and Pb in the soil solutions of different metals-treated soils increased significantly after applying 5 mmol EDTA kg(-1) soil (p<0.05). The potential of groundwater contamination will increase after applying EDTA and it is not recommended to be in situ used or have to use very carefully. The existence of Pb in the Cd-contaminated soil enhanced the uptake of Cd in rainbow pink in the treatments of control and 2 mmol EDTA kg(-1) soil. Cadmium inhibited the concentration of Zn without applying EDTA. However, whether the application of EDTA or not and the applied EDTA concentration had the greatest effect on the uptake of Pb when compared to Cd and Zn. After applying 5 mmol EDTA kg(-1) soil, Cd or Zn in the Pb-contaminated soil inhibited the uptake of Pb in rainbow pink, but there were no effect in other treatments.

Effects of multi-walled carbon nanotubes on mineralization and mobility of nonylphenol and sodium dodecyl sulfate in agricultural soils

NASA Astrophysics Data System (ADS)

Lillotte, Julia; Marschner, Bernd; Stumpe, Britta

2014-05-01

Nanotechnology is one of the major scientific research fields in this decade. One of the most wide-spread nanomaterials are carbon based nanoparticles (CNPs) which are increasingly be used in industry. Several studies shows that CNPs are interacting with other chemical compounds and organic pollutants in the environment. It is assumed that the interactions between CNPs and organic pollutants are affected by solution and aggregate behavior. Based on the knowledge of the behavior of CNPs and organic pollutants in aquatic systems the interactions of CNPs and organic pollutants in agricultural soils have to be studied. As organic pollutants two environmental substances, nonylphenol (NP) and sodium dodecyl sulfate (SDS) were selected as model substances. They occur frequently in aqueous systems and also show different solubility behavior. As CNP representatives, two different multi-walled carbon nanotubes (MWNT) were selected. They differed either in length or outer diameter. Conclusions therefrom are to be closed the influence of length and diameter of the sorption capacity of different organic pollutants. In addition, two agricultural soils (sandy and silty soil) and one forest soil (sandy soil) were chosen. Mineralization and sorption experiments were conducted to provide information about the degradation of organic pollutants in presence of multi-walled carbon nanotubes in soils. To analyze the CNPs mineralization potential, peroxidase activity was measured. Further extraction experiments were conducted to detect the extractable part of organic pollutants. The results show that the surface area of the MWNT has a significant impact on the sorption behav-ior of NP and SDS in soils. The sorption of NP and SDS is much higher than without MWNT. However, the properties of the organic pollutants (different water solubility and hydrophobicity) are equally important and should be noted. The degradation of both pollutants is influenced by MWNT. Due to the strong sorption of NP and SDS on the MWNT, the degradation of these pollutants in soils, is slower than without MWNT. The peroxidase activity did not contribute to NP and SDS degradation. But the peroxidase activity in agricultural soils is higher than in forest soils. The extractable fraction of NP and SDS is very low and amounts to a maximum of 2 %. Due to the lower degradation of NP and SDS in the presence of MWNT a longer retention of the substances in the soils and potential toxic effects for humans and animals, as a result of plant uptake may be taken into account.

Pathways of soil moisture controls on boundary layer dynamics

NASA Astrophysics Data System (ADS)

Siqueira, M.; Katul, G.; Porporato, A.

2007-12-01

Soil moisture controls on precipitation are now receiving significant attention in climate systems because the memory of their variability is much slower than the memory of the fast atmospheric processes. We propose a new model that integrates soil water dynamics, plant hydraulics and stomatal responses to water availability to estimate root water uptake and available energy partitioning, as well as feedbacks to boundary layer dynamics (in terms of water vapor and heat input to the atmospheric system). Using a simplified homogenization technique, the model solves the intrinsically 3-D soil water movement equations by two 1-D coupled Richards' equations. The first resolves the radial water flow from bulk soil to soil-root interface to estimate root uptake (assuming the vertical gradients in moisture persist during the rapid lateral flow), and then it solves vertical water movement through the soil following the radial moisture adjustments. The coupling between these two equations is obtained by area averaging the soil moisture in the radial domain (i.e. homogenization) to calculate the vertical fluxes. For each vertical layer, the domain is discretized in axi-symmetrical grid with constant soil properties. This is deemed to be appropriate given the fact that the root uptake occurs on much shorter time scales closely following diurnal cycles, while the vertical water movement is more relevant to the inter-storm time scale. We show that this approach was able to explicitly simulate known features of root uptake such as diurnal hysteresis of canopy conductance, water redistribution by roots (hydraulic lift) and downward shift of root uptake during drying cycles. The model is then coupled with an atmospheric boundary layer (ABL) growth model thereby permitting us to explore low-dimensional elements of the interaction between soil moisture and ABL states commensurate with the lifting condensation level.

Sorption and biodegradability of sludge bacterial extracellular polymers in soil and their influence on soil copper behavior.

PubMed

Zhou, L X; Zhou, S G; Zhan, X H

2004-01-01

Bacterial extracellular polymers (BEP) affect the translocation and fate of organic and inorganic pollutants in terrestrial and aquatic ecosystems. In this study, BEP from activated sludge was compared with sludge dissolved organic matter (DOM) in terms of behavior and effects on the mobilization and bioavailability of Cu in a well-aged Cu-contaminated orchard sandy loam. Addition of sludge BEP (10-200 mg dissolved organic carbon [DOC] L(-1)) to the soil resulted in 1.6- to 12.8-fold-higher soil soluble Cu concentration over the control and 1.3- to 2.2-fold over sludge DOM of the same concentration. Consequently, the Cu uptake by the ryegrass (Lolium perenne L., cv. Target) grown in the soil was increased by 31% due to interval watering of 100 mg DOC L(-1) of sludge BEP solution in a 35-d period. The influence of sludge BEP on mobilizing soil Cu could be maintained as long as 60 d or more, depending on BEP biodegradation status. The findings that sludge BEP promoted Cu mobilization and bioavailability could be attributed to less adsorption of BEP by soil, slow degradation, and higher affinity with Cu. For example, after 3 wk of aerobic incubation, the soluble Cu present in the sludge DOM-treated soil was reduced to about the level of the control, while the concentration of soluble Cu in BEP-treated soil was 6.2 times higher than that in the control. Therefore, sludge BEP could act as a facilitated-transport carrier of Cu. The environmental risk of Cu should receive much attention if BEP is incorporated into soils.

May humic acids or mineral fertilisation mitigate arsenic mobility and availability to carrot plants (Daucus carota L.) in a volcanic soil polluted by As from irrigation water?

PubMed

Caporale, Antonio G; Adamo, Paola; Azam, Shah M G G; Rao, Maria A; Pigna, Massimo

2018-02-01

Carrot (Daucus carota L.) is a widely consumed root vegetable, whose growth and safety might be threatened by growing-medium arsenic (As) contamination. By this work, we evaluated the effects of humic acids from Leonardite and NPK mineral fertilisation on As mobility and availability to carrot plants grown for 60 days in a volcanic soil irrigated with As-contaminated water - representing the most common scenario occurring in As-affected Italian areas. As expected, the irrigation with As-contaminated water caused a serious toxic effect on plant growth and photosynthetic rate; the highest rate of As also inhibited soil enzymatic activity. In contrast, the organic and mineral fertilisation alleviated, at least partially, the toxicity of As, essentially by stimulating plant growth and promoting nutrient uptake. The mobility of As in the volcanic soil and thus its phytoavailability were differently affected by the organic and mineral fertilisers; the application of humic acids mitigated the availability of the contaminant, likely by its partial immobilisation on humic acid sorption sites - thus raising up the intrinsic anionic sorption capacity of the volcanic soil; the mineral fertilisation enhanced the mobility of As in soil, probably due to competition of P for the anionic sorption sites of the soil variable-charge minerals, very affine to available P. These findings hence suggest that a proper soil management of As-polluted volcanic soils and amendment by stable organic matter might mitigate the environmental risk of these soils, thus minimising the availability of As to biota. Copyright © 2017 Elsevier Ltd. All rights reserved.

Seasonal variations in methane fluxes in response to summer warming and leaf litter addition in a subarctic heath ecosystem

NASA Astrophysics Data System (ADS)

Pedersen, Emily Pickering; Elberling, Bo; Michelsen, Anders

2017-08-01

Methane (CH4) is a powerful greenhouse gas controlled by both biotic and abiotic processes. Few studies have investigated CH4 fluxes in subarctic heath ecosystems, and climate change-induced shifts in CH4 flux and the overall carbon budget are therefore largely unknown. Hence, there is an urgent need for long-term in situ experiments allowing for the study of ecosystem processes over time scales relevant to environmental change. Here we present in situ CH4 and CO2 flux measurements from a wet heath ecosystem in northern Sweden subjected to 16 years of manipulations, including summer warming with open-top chambers, birch leaf litter addition, and the combination thereof. Throughout the snow-free season, the ecosystem was a net sink of CH4 and CO2 (CH4 -0.27 mg C m-2 d-1; net ecosystem exchange -1827 mg C m-2 d-1), with highest CH4 uptake rates (-0.70 mg C m-2 d-1) during fall. Warming enhanced net CO2 flux, while net CH4 flux was governed by soil moisture. Litter addition and the combination with warming significantly increased CH4 uptake rates, explained by a pronounced soil drying effect of up to 32% relative to ambient conditions. Both warming and litter addition also increased the seasonal average concentration of dissolved organic carbon in the soil. The site was a carbon sink with a net uptake of 60 g C m-2 over the snow-free season. However, warming reduced net carbon uptake by 77%, suggesting that this ecosystem type might shift from snow-free season sink to source with increasing summer temperatures.

Plant uptake of pentachlorophenol from sludge-amended soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bellin, C.A.; O'Connor, G.A.

A greenhouse study was conducted to determine the effects of sludge on plant uptake of {sup 14}C-pentachlorophenol (PCP). Plants included tall fescue (Festuca arundinacea Schreb.), lettuce (Latuca sativa L.), carrot (Daucus carota L.), and chile pepper (Capsicum annum L.). Minimal intact PCP was detected in the fescue and lettuce by gas chromatography/mass spectrometry (GC/MS) analysis. No intact PCP was detected in the carrot tissue extracts. Chile pepper was not analyzed for intact PCP because methylene chloride extracts contained minimal {sup 14}C. The GC/MS analysis of soil extracts at harvest suggests a half-life of PCP of about 10 d independent ofmore » sludge rate or PCP loading rate. Rapid degradation of PCP in the soil apparently limited PCP availability to the plant. Bioconcentration factors (dry plant wt./initial soil PCP concentration) based on intact PCP were <0.01 for all crops, suggesting little PCP uptake. Thus, food-chain crop PCP uptake in these alkaline soils should not limit land application of sludge.« less

Plant uptake of pentachlorophenol from sludge-amended soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bellin, C.A.; O'Connor, G.A.

A greenhouse study was conducted to determine the effects of sludge on plant uptake of {sup 14}C-pentachlorophenol (PCP). Plants included tall fescue (Festuca arundinacea Schreb.), lettuce (Latuca sativa L.), carrot (Daucus carota L.), and chile pepper (Capsicum annum L.). Minimal intact PCP was detected in the fescue and lettuce by gas chromatography/mass spectrometry (GC/MS) analysis. No intact PCP was detected in the carrot tissue extracts. Chile pepper was not analyzed for intact PCP because methylene chloride extracts contained minimal {sup 14}C. The GC/MS analysis of soil extracts at harvest suggests a half-life of PCP of about 10 d independent ofmore » sludge rate or PCP loading rate. Rapid degradation of PCP in the soil apparently limited PCP availability to the plant. Bioconcentration factors (dry plant wt./initial soil PCP concentration) based on intact PCP were < 0.01 for all crops, suggesting little PCP uptake. Thus, food-chain crop PCP uptake in these alkaline soils should not limit land application of sludge.« less

Plant uptake of 238U, 235U, 232Th, 226Ra, 210Pb and 40K from a coal ash and slag disposal site and control soil under field conditions: A preliminary study.

PubMed

Skoko, Božena; Marović, Gordana; Babić, Dinko; Šoštarić, Marko; Jukić, Mirela

2017-06-01

The aim of this study was to investigate the uptake of 238 U, 235 U, 232 Th, 226 Ra, 210 Pb and 40 K by plants that grow on a coal ash and slag disposal site known for its higher content of naturally occurring radionuclides. Plant species that were sampled are common for the Mediterranean flora and can be divided as follows: grasses & herbs, shrubs and trees. To compare the activity concentrations and the resultant concentration ratios of the disposal site with those in natural conditions, we used control data specific for the research area, obtained for plants growing on untreated natural soil. Radionuclide activity concentrations were determined by high resolution gamma-ray spectrometry. Media parameters (pH, electrical conductivity and organic matter content) were also analysed. We confirmed significantly higher activity concentrations of 238 U, 235 U, 226 Ra and 210 Pb in ash and slag compared to control soil. However, a significant increase in the radionuclide activity concentration in the disposal site's vegetation was observed only for 226 Ra. On the contrary, a significantly smaller activity concentration of 40 K in ash and slag had no impact on its activity concentration in plant samples. The calculated plant uptake of 238 U, 235 U, 226 Ra and 210 Pb is significantly smaller in comparison with the uptake at the control site, while it is vice versa for 40 K. No significant difference was observed between the disposal site and the control site's plant uptake of 232 Th. These results can be the foundation for further radioecological assessment of this disposal site but also, globally, they can contribute to a better understanding of nature and long-term management of such disposal sites. Copyright © 2017 Elsevier Ltd. All rights reserved.

Predicting plant uptake of cadmium: validated with long-term contaminated soils.

PubMed

Lamb, Dane T; Kader, Mohammed; Ming, Hui; Wang, Liang; Abbasi, Sedigheh; Megharaj, Mallavarapu; Naidu, Ravi

2016-10-01

Cadmium accumulates in plant tissues at low soil loadings and is a concern for human health. Yet at higher levels it is also of concern for ecological receptors. We determined Cd partitioning constants for 41 soils to examine the role of soil properties controlling Cd partitioning and plant uptake. From a series of sorption and dose response studies, transfer functions were developed for predicting Cd uptake in Cucumis sativa L. (cucumber). The parameter log K f was predicted with soil pH ca , logCEC and log OC. Transfer of soil pore-water Cd 2+ to shoots was described with a power function (R 2  = 0.73). The dataset was validated with 13 long-term contaminated soils (plus 2 control soils) ranging in Cd concentration from 0.2 to 300 mg kg -1 . The series of equations predicting Cd shoot from pore-water Cd 2+ were able to predict the measured data in the independent dataset (root mean square error = 2.2). The good relationship indicated that Cd uptake to cucumber shoots could be predicted with Cd pore and Cd 2+ without other pore-water parameters such as pH or Ca 2+ . The approach may be adapted to a range of plant species.

Composted biosolids and treated wastewater as sources of pharmaceuticals and personal care products for plant uptake: A case study with carbamazepine.

PubMed

Ben Mordechay, Evyatar; Tarchitzky, Jorge; Chen, Yona; Shenker, Moshe; Chefetz, Benny

2018-01-01

Irrigation with treated wastewater (TWW) and application of biosolids to arable land expose the agro-environment to pharmaceuticals and personal care products (PPCPs) which can be taken up by crops. In this project, we studied the effect of a carrier medium (e.g., biosolids and TWW) on plant (tomato, wheat and lettuce) uptake, translocation and metabolism of carbamazepine as a model for non-ionic PPCPs. Plant uptake and bioconcentration factors were significantly lower in soils amended with biosolids compared to soils irrigated with TWW. In soils amended with biosolids and irrigated with TWW, the bioavailability of carbamazepine for plant uptake was moderately decreased as compared to plants grown in soils irrigated with TWW alone. While TWW acts as a continuous source of PPCPs, biosolids act both as a source and a sink for these compounds. Moreover, it appears that decomposition of the biosolids in the soil after amendment enhances their adsorptive properties, which in turn reduces the bioavailability of PPCPs in the soil environment. In-plant metabolism of carbamazepine was found to be independent of environmental factors, such as soil type, carrier medium, and absolute amount implemented to the soil, but was controlled by the total amount taken up by the plant. Copyright © 2017 Elsevier Ltd. All rights reserved.

Comparative toxic responses of male and female lizards (Eremias argus) exposed to (S)-metolachlor-contaminated soil.

PubMed

Chen, Li; Wang, Dezhen; Tian, Zhongnan; Di, Shanshan; Zhang, Wenjun; Wang, Fang; Zhou, Zhiqiang; Diao, Jinling

2017-08-01

Soil contamination caused by the widespread use of pesticides is one of the main environmental problems facing conservation organizations. (S)-metolachlor (SM) is a selective pre-emergent herbicide that poses potential risks to soil-related organisms such as reptiles. The present study elucidated the toxic effects of SM (3 and 30 mg/kg soil weight) in Eremias argus. The results showed that growth pattern was similar between the sexes in breeding season. For males, both kidney coefficient (KC) and testis coefficient in the exposure group were significantly different from those in the control group, while only KC in the high-dose group was significantly higher for females. Based on histopathological analysis, the livers of female lizards were more vulnerable than those of males in the exposure group. A reduction in total egg output was observed in SM exposed lizards. Accumulation studies indicated that skin exposure may be an important route for SM uptake in E. argus, and that the liver and lung have strong detoxification abilities. In addition, the body burdens of the lizards increased with increasing SM concentration in the soil. Copyright © 2017 Elsevier Ltd. All rights reserved.

Modeling long-term uptake and re-volatilization of semi-volatile organic compounds (SVOCs) across the soil-atmosphere interface.

PubMed

Bao, Zhongwen; Haberer, Christina; Maier, Uli; Beckingham, Barbara; Amos, Richard T; Grathwohl, Peter

2015-12-15

Soil-atmosphere exchange is important for the environmental fate and atmospheric transport of many semi-volatile organic compounds (SVOCs). This study focuses on modeling the vapor phase exchange of semi-volatile hydrophobic organic pollutants between soil and the atmosphere using the multicomponent reactive transport code MIN3P. MIN3P is typically applied to simulate aqueous and vapor phase transport and reaction processes in the subsurface. We extended the code to also include an atmospheric boundary layer where eddy diffusion takes place. The relevant processes and parameters affecting soil-atmosphere exchange were investigated in several 1-D model scenarios and at various time scales (from years to centuries). Phenanthrene was chosen as a model compound, but results apply for other hydrophobic organic compounds as well. Gaseous phenanthrene was assumed to be constantly supplied to the system during a pollution period and a subsequent regulation period (with a 50% decline in the emission rate). Our results indicate that long-term soil-atmosphere exchange of phenanthrene is controlled by the soil compartment - re-volatilization thus depends on soil properties. A sensitivity analysis showed that accumulation and transport in soils in the short term is dominated by diffusion, whereas in the long term groundwater recharge and biodegradation become relevant. As expected, sorption causes retardation and slows down transport and biodegradation. If atmospheric concentration is reduced (e.g. after environmental regulations), re-volatilization from soil to the atmosphere occurs only for a relatively short time period. Therefore, the model results demonstrate that soils generally are sinks for atmospheric pollutants. The atmospheric boundary layer is only relevant for time scales of less than one month. The extended MIN3P code can also be applied to simulate fluctuating concentrations in the atmosphere, for instance due to temperature changes in the topsoil. Copyright © 2015. Published by Elsevier B.V.

Effect of Polonite used for phosphorus removal from wastewater on soil properties and fertility of a mountain meadow.

PubMed

Cucarella, Victor; Mazurek, Ryszard; Zaleski, Tomasz; Kopeć, Michał; Renman, Gunno

2009-07-01

Reactive filter materials used for phosphorus (P) removal from wastewater can be disposed of as soil amendments after treatment, thus recycling P and other macro- and micro-nutrients to plants. In addition, materials with a high pH and Ca content, such as Polonite, are potential soil conditioners, which can be particularly beneficial for acid soils. Polonite previously used for on-site wastewater treatment was applied as a soil amendment to a mountain meadow. The amendment significantly increased soil pH and decreased the hydrolytic acidity, thus reducing Al toxicity risks. The effects were comparable to those of liming. No difference in yield and P uptake by meadow plants was observed. The uptake of metals was lower for amended soils, especially the uptake of Mn. Using Polonite after wastewater treatment as a soil amendment is thus a viable disposal alternative that can replace liming, when necessary, being capable of recycling P and other nutrients to meadow plants.

Selenium Uptake and Volatilization by Marine Algae

NASA Astrophysics Data System (ADS)

Luxem, Katja E.; Vriens, Bas; Wagner, Bettina; Behra, Renata; Winkel, Lenny H. E.

2015-04-01

Selenium (Se) is an essential trace nutrient for humans. An estimated one half to one billion people worldwide suffer from Se deficiency, which is due to low concentrations and bioavailability of Se in soils where crops are grown. It has been hypothesized that more than half of the atmospheric Se deposition to soils is derived from the marine system, where microorganisms methylate and volatilize Se. Based on model results from the late 1980s, the atmospheric flux of these biogenic volatile Se compounds is around 9 Gt/year, with two thirds coming from the marine biosphere. Algae, fungi, and bacteria are known to methylate Se. Although algal Se uptake, metabolism, and methylation influence the speciation and bioavailability of Se in the oceans, these processes have not been quantified under environmentally relevant conditions and are likely to differ among organisms. Therefore, we are investigating the uptake and methylation of the two main inorganic Se species (selenate and selenite) by three globally relevant microalgae: Phaeocystis globosa, the coccolithophorid Emiliania huxleyi, and the diatom Thalassiosira oceanica. Selenium uptake and methylation were quantified in a batch experiment, where parallel gas-tight microcosms in a climate chamber were coupled to a gas-trapping system. For E. huxleyi, selenite uptake was strongly dependent on aqueous phosphate concentrations, which agrees with prior evidence that selenite uptake by phosphate transporters is a significant Se source for marine algae. Selenate uptake was much lower than selenite uptake. The most important volatile Se compounds produced were dimethyl selenide, dimethyl diselenide, and dimethyl selenyl sulfide. Production rates of volatile Se species were larger with increasing intracellular Se concentration and in the decline phase of the alga. Similar experiments are being carried out with P. globosa and T. oceanica. Our results indicate that marine algae are important for the global cycling of Se, especially in low phosphate regimes such as oligotrophic waters and late stage phytoplankton blooms.

[Promotion effects of microorganisms on phytoremediation of heavy metals-contaminated soil].

PubMed

Yang, Zhuo; Wang, Zhan-Li; Li, Bo-Wen; Zhang, Rui-Fang

2009-08-01

Taking Brassica juncea as a hyperaccumulator, a pot experiment was conducted to study the effects of Bacillusme gaterium - Bacillus mucilaginosus mixed agent and Aspergillus niger 30177 fermentation liquor on the phytoremediation of Cd, Pb, and Zn-contaminated soil. The B. gaterium - B. mucilaginosus mixed agent not only promoted the growth of B. juncea, but also increased the soil Cd, Pb, and Zn uptake by the hyperaccumulator, with the phytoremediation efficiency enhanced greatly. The enrichment amount of Cd, Pb and Zn in B. juncea on the soil added with soluble Cd, Pb and Zn increased by 1.18, 1.54 and 0.85 folds, while that on the soil added with Cd, Pb and Zn-contaminated sediment increased by 4.00, 0. 64 and 0. 65 folds, respectively, compared with the control. A. niger 30177 fermentation liquor increased the soil Cd, Pb, and Zn uptake by B. juncea. Comparing with the control, the enrichment amount of Cd, Pb and Zn in aboveground part of B. juncea on the soil added with soluble Cd, Pb and Zn increased by 88.82%, 129.04% and 16.80%, while that on the soil added with Cd, Pb and Zn-contaminated sediment increased by 78.95%, 113.63% and 33.85%, respectively. However, A. niger 30177 fermentation liquor decreased the B. juncea biomass greatly, having less effect in the enhancement of phytoremediation efficiency. The analysis of reversed-phase high performance liquid chromatography showed that the fermentation liquor of B. gaterium and B. mucilaginosus contained some organic acids such as oxalic acid and citric acid. These acids could dissolve the heavy metals to some degree, and accordingly, enhance the bioavailability of the metals.

Effect of dissimilatory iron and sulfate reduction on arsenic dynamics in the wetland rhizosphere and its bioaccumulation in plants

NASA Astrophysics Data System (ADS)

Jaffe, P. R.; Zhang, Z.; Moon, H. S.; Myneni, S.

2015-12-01

The mobility of arsenic in soils is linked to biogeochemical redox processes. The presence of wetland plants in riparian wetlands has a significant impact on the biogeochemical dynamics of the soil/sediment-redoxcline due to the release of root exudates and root turnover and oxygen transfer from the roots into the surrounding sediment. Micro-environmental redox conditions in the rhizosphere affect As, Fe, and S speciation as well as Fe(III) plaque deposition, which affects arsenic transport and uptake by plants. To investigate the dynamics of As coupled to S and Fe cycling in wetlands, mesocosms were operated in a greenhouse under various conditions (high and low Fe, high and low sulfate, with plant and without plants) for four months. Results show that the presence of plants, high Fe, and high SO42- levels enhanced As sequestration in these soils. We hypothesize that this compounding effect is because plants release biodegradable organic carbon, which is used by microorganism to reduce ferrihydrite and SO42- to generate FeS, FeS2, and/or orpiment (As2S3). Over the concentration range studied, As immobilization in soil and uptake by Scirpus actus was mainly controlled by SO42- rather than Fe levels. Under high sulfate levels, As immobilization in soil increased by 50% and As concentrations in plant roots increased by 97%, whereas no significant changes in plant As levels were seen for varying Fe concentrations. More than 80% of As was sequestrated in soils rather than plant uptake. Pore water As speciation analyses indicate that 20% more As(V) was reduced to As(III) under high sulfate as than low sulfate levels and that low Fe was more favorable to the As dissimilatory reduction. More dissimilatory arsenate-respiring bacteria (DARB) under high sulfate were confirmed by quantitative PCR. Arsenic distribution in plant leafs and roots after 30 days of exposure to As was analyzed via Synchrotron X-ray fluorescence analyses. The uptake of As by plants was distributed along leaf veins. The distribution of As in roots was correlated with the distribution of Fe in the roots, rather than with Ca or Zn. These observations expand our understanding of how Fe and S influences microbial As redox metabolisms and provide insights into the biogeochemical coupling between As and S as well as Fe in As contaminated wetlands.

Anomalous bioaccumulation of lead in the earthworm Eisenoides lonnbergi (Michaelsen)

USGS Publications Warehouse

Beyer, W. Nelson; Codling, Eton E.; Rutzke, Michael A.

2018-01-01

Lead concentrations in soil organisms are usually well below those in the associated soil and tend to decrease with each higher trophic level in a food chain. Earthworms of the species Eisenoides lonnbergi provide an exception to this observation, accumulating very high concentrations of lead from acidic soils. Earthworms belonging to this species were collected from strongly to extremely acidic soils at 16 sites on a wildlife refuge in Maryland, USA. A lead concentration as high as 766 mg/kg, dry weight, was detected in depurated E. lonnbergi collected from soil containing only 17 mg/kg of lead. Concentration factors (ratio of lead concentration in earthworms to lead concentration in soil, dry wt) were highly variable at the sites, from 1.0 to 83. As suggested previously, lead absorption by earthworms is enhanced in low-calcium soils. The anomalously high concentrations of lead found in E. lonnbergi are more closely correlated with the uptake of calcium from acidic soils than with bioaccessibility of soil lead. 

Use of an exchange method to estimate the association and dissociation rate constants of cadmium complexes formed with low-molecular-weight organic acids commonly exuded by plant roots.

PubMed

Schneider, André; Nguyen, Christophe

2011-01-01

Organic acids released from plant roots can form complexes with cadmium (Cd) in the soil solution and influence metal bioavailability not only due to the nature and concentration of the complexes but also due to their lability. The lability of a complex influences its ability to buffer changes in the concentration of free ions (Cd); it depends on the association (, m mol s) and dissociation (, s) rate constants. A resin exchange method was used to estimate and (m mol s), which is the conditional estimate of depending on the calcium (Ca) concentration in solution. The constants were estimated for oxalate, citrate, and malate, three low-molecular-weight organic acids commonly exuded by plant roots and expected to strongly influence Cd uptake by plants. For all three organic acids, the and estimates were around 2.5 10 m mol s and 1.3 × 10 s, respectively. Based on the literature, these values indicate that the Cd- low-molecular-weight organic acids complexes formed between Cd and low-molecular-weight organic acids may be less labile than complexes formed with soil soluble organic matter but more labile than those formed with aminopolycarboxylic chelates. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Soluble soil aluminum alters the relative uptake of mineral nitrogen forms by six mature temperate broadleaf tree species: possible implications for watershed nitrate retention

Treesearch

Mark B. Burnham; Jonathan R. Cumming; Mary Beth Adams; William T. Peterjohn

2017-01-01

Increased availability of monomeric aluminum ( Al3+) in forest soils is an important adverse effect of acidic deposition that reduces root growth and inhibits nutrient uptake. There is evidence that Al3+ exposure interferes with NO3− uptake. If true for overstory trees, the...

Uptake Kinetics of Arsenic Species in Rice Plants

PubMed Central

Abedin, Mohammed Joinal; Feldmann, Jörg; Meharg, Andy A.

2002-01-01

Arsenic (As) finds its way into soils used for rice (Oryza sativa) cultivation through polluted irrigation water, and through historic contamination with As-based pesticides. As is known to be present as a number of chemical species in such soils, so we wished to investigate how these species were accumulated by rice. As species found in soil solution from a greenhouse experiment where rice was irrigated with arsenate contaminated water were arsenite, arsenate, dimethylarsinic acid, and monomethylarsonic acid. The short-term uptake kinetics for these four As species were determined in 7-d-old excised rice roots. High-affinity uptake (0–0.0532 mm) for arsenite and arsenate with eight rice varieties, covering two growing seasons, rice var. Boro (dry season) and rice var. Aman (wet season), showed that uptake of both arsenite and arsenate by Boro varieties was less than that of Aman varieties. Arsenite uptake was active, and was taken up at approximately the same rate as arsenate. Greater uptake of arsenite, compared with arsenate, was found at higher substrate concentration (low-affinity uptake system). Competitive inhibition of uptake with phosphate showed that arsenite and arsenate were taken up by different uptake systems because arsenate uptake was strongly suppressed in the presence of phosphate, whereas arsenite transport was not affected by phosphate. At a slow rate, there was a hyperbolic uptake of monomethylarsonic acid, and limited uptake of dimethylarsinic acid. PMID:11891266

Clipping and shading alter NH4+ uptake by plants in grazed and ungrazed Tibetan alpine grasslands

NASA Astrophysics Data System (ADS)

Sun, Yue; Schleuss, Per; Li, Qianru; Yang, Baijie; Xu, Xingliang; Kuzyakov, Yakov

2014-05-01

The Kobresia pastures are the most common and most important vegetation type on the Tibetan Plateau as it occupies more than 35% the plateau area. These pastures have been remained stable for about one million years, but have been strongly changed by increased grazing in the recent decades which led to serious grassland degradation. Previous studies on the N cycling in alpine grasslands showed that plant growth was limited by low N availability due to low N mineralization caused by low temperature. However, the effect of grazing on N turnover processes and plant N uptake remains unclear. To clarify the grazing effect for a better understanding N mineralization and plant N uptake in these alpine grasslands, we conducted a 15N experiment in grazed and ungraded plots in these alpine grasslands. Because ammonium was a dominant N form, we used 15N-labeled ammonium so that we can also measure gross N mineralization. To explore the effect of root exudates on 15NH4+ uptake by plants and gross N mineralization, three treatments such as clipping, shading and control were used. Initially, all treatments were labeled by 15NH4+, with blank treatments no 15N tracer addition. Plant and soil samples were collected 7, 14 and 28 days after the labelling. 15NH4+ uptake by alpine plants almost did not change after clipping in the grazed plots, but its uptake was lower under the clipping treatment than under the control treatment in the ungrazed plots. 15N recovery in plants under the shading treatment remained the lowest level in grazed and ungrazed plots. Although clipping removed a part of aboveground biomass, subsequent stimulation of plant growth increased N uptake by plants. Likely, moderate grazing removed a part of aboveground biomass, but 15N recovery in plants was still compared to that in the ungrazed plots, indicating moderate grazing stimulate N uptake by plants through compensatory growth. Gross N mineralization under the shading treatment was higher than under the clipping treatment (shading vs clipping: 0.42 vs 0.34 mg N kg-1 h-1) in the grazed plot. In contrast, gross N mineralization was lower for shading treatment than for clipping treatment (shading vs clipping 0.47 vs 0.63 mg N kg-1 h-1) in the ungrazed plot. Gross N mineralization in the ungrazed soil was higher than in the grazed soil, suggesting that grazing greatly reduced the potential to provide available nitrogen for plants and microorganisms. Therefore, we concluded that low photosynthesis caused by shading, clipping and grazing can affect N transformation and therefore affect the format of soil organic matter.

Nutrient additions to a tropical rain forest drive substantial soil carbon dioxide losses to the atmosphere.

PubMed

Cleveland, Cory C; Townsend, Alan R

2006-07-05

Terrestrial biosphere-atmosphere carbon dioxide (CO(2)) exchange is dominated by tropical forests, where photosynthetic carbon (C) uptake is thought to be phosphorus (P)-limited. In P-poor tropical forests, P may also limit organic matter decomposition and soil C losses. We conducted a field-fertilization experiment to show that P fertilization stimulates soil respiration in a lowland tropical rain forest in Costa Rica. In the early wet season, when soluble organic matter inputs to soil are high, P fertilization drove large increases in soil respiration. Although the P-stimulated increase in soil respiration was largely confined to the dry-to-wet season transition, the seasonal increase was sufficient to drive an 18% annual increase in CO(2) efflux from the P-fertilized plots. Nitrogen (N) fertilization caused similar responses, and the net increases in soil respiration in response to the additions of N and P approached annual soil C fluxes in mid-latitude forests. Human activities are altering natural patterns of tropical soil N and P availability by land conversion and enhanced atmospheric deposition. Although our data suggest that the mechanisms driving the observed respiratory responses to increased N and P may be different, the large CO(2) losses stimulated by N and P fertilization suggest that knowledge of such patterns and their effects on soil CO(2) efflux is critical for understanding the role of tropical forests in a rapidly changing global C cycle.

Nutrient Uptake and Use Efficiency by Tropical Legume Cover Crops at varying pH of an Oxisol

USDA-ARS?s Scientific Manuscript database

Oxisols comprise large soil group in tropical America. These soils are acidic and having low fertility. Use of tropical legume cover crops in cropping systems is an important strategy to improve fertility of these soils for sustainable crop production. Data are limited on nutrient uptake and use ef...

Seasonal changes in depth of water uptake for encroaching trees Juniperus virginiana and Pinus ponderosa and two dominant C4 grasses in a semiarid grassland.

PubMed

Eggemeyer, Kathleen D; Awada, Tala; Harvey, F Edwin; Wedin, David A; Zhou, Xinhua; Zanner, C William

2009-02-01

We used the natural abundance of stable isotopic ratios of hydrogen and oxygen in soil (0.05-3 m depth), plant xylem and precipitation to determine the seasonal changes in sources of soil water uptake by two native encroaching woody species (Pinus ponderosa P. & C. Lawson, Juniperus virginiana L.), and two C(4) grasses (Schizachyrium scoparium (Michx.) Nash, Panicum virgatum L.), in the semiarid Sandhills grasslands of Nebraska. Grass species extracted most of their water from the upper soil profile (0.05-0.5 m). Soil water uptake from below 0.5 m depth increased under drought, but appeared to be minimal in relation to the total water use of these species. The grasses senesced in late August in response to drought conditions. In contrast to grasses, P. ponderosa and J. virginiana trees exhibited significant plasticity in sources of water uptake. In winter, tree species extracted a large fraction of their soil water from below 0.9 m depth. In spring when shallow soil water was available, tree species used water from the upper soil profile (0.05-0.5 m) and relied little on water from below 0.5 m depth. During the growing season (May-August) significant differences between the patterns of tree species water uptake emerged. Pinus ponderosa acquired a large fraction of its water from the 0.05-0.5 and 0.5-0.9 m soil profiles. Compared with P. ponderosa, J. virginiana acquired water from the 0.05-0.5 m profile during the early growing season but the amount extracted from this profile progressively declined between May and August and was mirrored by a progressive increase in the fraction taken up from 0.5-0.9 m depth, showing plasticity in tracking the general increase in soil water content within the 0.5-0.9 m profile, and being less responsive to growing season precipitation events. In September, soil water content declined to its minimum, and both tree species shifted soil water uptake to below 0.9 m. Tree transpiration rates (E) and water potentials (Psi) indicated that deep water sources did not maintain E which sharply declined in September, but played an important role in the recovery of tree Psi. Differences in sources of water uptake among these species and their ecological implications on tree-grass dynamics and soil water in semiarid environments are discussed.

The Plant as Metaorganism and Research on Next-Generation Systemic Pesticides – Prospects and Challenges

PubMed Central

Vryzas, Zisis

2016-01-01

Systemic pesticides (SPs) are usually recommended for soil treatments and as seed coating agents and are taken up from the soil by involving various plant-mediated processes, physiological, and morphological attributes of the root systems. Microscopic insights and next-generation sequencing combined with bioinformatics allow us now to identify new functions and interactions of plant-associated bacteria and perceive plants as meta-organisms. Host symbiotic, rhizo-epiphytic, endophytic microorganisms and their functions on plants have not been studied yet in accordance with uptake, tanslocation and action of pesticides. Root tips exudates mediated by rhizobacteria could modify the uptake of specific pesticides while bacterial ligands and enzymes can affect metabolism and fate of pesticide within plant. Over expression of specific proteins in cell membrane can also modify pesticide influx in roots. Moreover, proteins and other membrane compartments are usually involved in pesticide modes of action and resistance development. In this article it is discussed what is known of the physiological attributes including apoplastic, symplastic, and trans-membrane transport of SPs in accordance with the intercommunication dictated by plant–microbe, cell to cell and intracellular signaling. Prospects and challenges for uptake, translocation, storage, exudation, metabolism, and action of SPs are given through the prism of new insights of plant microbiome. Interactions of soil applied pesticides with physiological processes, plant root exudates and plant microbiome are summarized to scrutinize challenges for the next-generation pesticides. PMID:28018306

Arctic water tracks retain phosphorus and transport ammonium

NASA Astrophysics Data System (ADS)

Harms, T.; Cook, C. L.; Wlostowski, A. N.; Godsey, S.; Gooseff, M. N.

2017-12-01

Hydrologic flowpaths propagate biogeochemical signals among adjacent ecosystems, but reactions may attenuate signals by retaining, removing, or transforming dissolved and suspended materials. The theory of nutrient spiraling describes these simultaneous reaction and transport processes, but its application has been limited to stream channels. We applied nutrient spiraling theory to water tracks, zero-order channels draining Arctic hillslopes that contain perennially saturated soils and flow at the surface either perennially or in response to precipitation. In the Arctic, experimental warming results in increased availability of nitrogen, the limiting nutrient for hillslope vegetation at the study site, which may be delivered to aquatic ecosystems by water tracks. Increased intensity of rain events, deeper snowpack, earlier snowmelt, and increasing thaw depth resulting from climate change might support increased transport of nutrients, but the reactive capacity of hillslope flowpaths, including sorption and uptake by plants and microbes, could counter transport to regulate solute flux. Characteristics of flowpaths might influence the opportunity for reaction, where slower flowpaths increase the contact time between solutes and soils or roots. We measured nitrogen and phosphorus uptake and transient storage of water tracks through the growing season and found that water tracks retain inorganic phosphorus, but transport ammonium. Nutrient uptake was unrelated to transient storage, suggesting high capacity for nutrient retention by shallow organic soils and vegetation. These observations indicate that increased availability of ammonium, the biogeochemical signal of warming tundra, is propagated by hillslope flowpaths, whereas water tracks attenuate delivery of phosphorus to aquatic ecosystems, where its availability typically limits production.

Composition, dynamics, and fate of leached dissolved organic matter in terrestrial ecosystems: Results from a decomposition experiment

USGS Publications Warehouse

Cleveland, C.C.; Neff, J.C.; Townsend, A.R.; Hood, E.

2004-01-01

Fluxes of dissolved organic matter (DOM) are an important vector for the movement of carbon (C) and nutrients both within and between ecosystems. However, although DOM fluxes from throughfall and through litterfall can be large, little is known about the fate of DOM leached from plant canopies, or from the litter layer into the soil horizon. In this study, our objectives were to determine the importance of plant-litter leachate as a vehicle for DOM movement, and to track DOM decomposition [including dissolve organic carbon (DOC) and dissolved organic nitrogen (DON) fractions], as well as DOM chemical and isotopic dynamics, during a long-term laboratory incubation experiment using fresh leaves and litter from several ecosystem types. The water-extractable fraction of organic C was high for all five plant species, as was the biodegradable fraction; in most cases, more than 70% of the initial DOM was decomposed in the first 10 days of the experiment. The chemical composition of the DOM changed as decomposition proceeded, with humic (hydrophobic) fractions becoming relatively more abundant than nonhumic (hydrophilic) fractions over time. However, in spite of proportional changes in humic and nonhumic fractions over time, our data suggest that both fractions are readily decomposed in the absence of physicochemical reactions with soil surfaces. Our data also showed no changes in the ??13C signature of DOM during decomposition, suggesting that isotopic fractionation during DOM uptake is not a significant process. These results suggest that soil microorganisms preferentially decompose more labile organic molecules in the DOM pool, which also tend to be isotopically heavier than more recalcitrant DOM fractions. We believe that the interaction between DOM decomposition dynamics and soil sorption processes contribute to the ??13C enrichment of soil organic matter commonly observed with depth in soil profiles.

Sorption, Uptake, and Translocation of Pharmaceuticals across Multiple Interfaces in Soil Environment

NASA Astrophysics Data System (ADS)

Zhang, W.; Liu, C. H.; Bhalsod, G.; Zhang, Y.; Chuang, Y. H.; Boyd, S. A.; Teppen, B. J.; Tiedje, J. M.; Li, H.

2015-12-01

Pharmaceuticals are contaminants of emerging concern frequently detected in soil and water environments, raising serious questions on their potential impact on human and ecosystem health. Overuse and environmental release of antibiotics (i.e., a group of pharmaceuticals extensively used in human medicine and animal agriculture) pose enormous threats to the health of human, animal, and the environment, due to proliferation of antibiotic resistant bacteria. Recently, we have examined interactions of pharmaceuticals with soil geosorbents, bacteria, and vegetable crops in order to elucidate pathways of sorption, uptake, and translocation of pharmaceuticals across the multiple interfaces in soils. Sorption of pharmaceuticals by biochars was studied to assess the potential of biochar soil amendment for reducing the transport and bioavailability of antibiotics. Our preliminary results show that carbonaceous materials such as biochars and activated carbon had strong sorption capacities for antibiotics, and consequently decreased the uptake and antibiotic resistance gene expression by an Escherichia coli bioreporter. Thus, biochar soil amendment showed the potential for reducing selection pressure on antibiotic resistant bacteria. Additionally, since consumption of pharmaceutical-tainted food is a direct exposure pathway for humans, it is important to assess the uptake and accumulation of pharmaceuticals in food crops grown in contaminated soils or irrigated with reclaimed water. Therefore, we have investigated the uptake and accumulations of pharmaceuticals in greenhouse-grown lettuce under contrasting irrigation practices (i.e., overhead or surface irrigations). Preliminary results indicate that greater pharmaceutical concentrations were measured in overhead irrigated lettuce than in surface irrigated lettuce. This could have important implications when selecting irrigation scheme to use the reclaimed water for crop irrigation. In summary, proper soil and water management is needed to minimize the transfer of pharmaceuticals from soil and water to biota.

A mechanistic, globally-applicable model of plant nitrogen uptake, retranslocation and fixation

NASA Astrophysics Data System (ADS)

Fisher, J. B.; Tan, S.; Malhi, Y.; Fisher, R. A.; Sitch, S.; Huntingford, C.

2008-12-01

Nitrogen is one of the nutrients that can most limit plant growth, and nitrogen availability may be a controlling factor on biosphere responses to climate change. We developed a plant nitrogen assimilation model based on a) advective transport through the transpiration stream, b) retranslocation whereby carbon is expended to resorb nitrogen from leaves, c) active uptake whereby carbon is expended to acquire soil nitrogen, and d) biological nitrogen fixation whereby carbon is expended for symbiotic nitrogen fixers. The model relies on 9 inputs: 1) net primary productivity (NPP), 2) plant C:N ratio, 3) available soil nitrogen, 4) root biomass, 5) transpiration rate, 6) saturated soil depth,7) leaf nitrogen before senescence, 8) soil temperature, and 9) ability to fix nitrogen. A carbon cost of retranslocation is estimated based on leaf nitrogen and compared to an active uptake carbon cost based on root biomass and available soil nitrogen; for nitrogen fixers both costs are compared to a carbon cost of fixation dependent on soil temperature. The NPP is then allocated to optimize growth while maintaining the C:N ratio. The model outputs are total plant nitrogen uptake, remaining NPP available for growth, carbon respired to the soil and updated available soil nitrogen content. We test and validate the model (called FUN: Fixation and Uptake of Nitrogen) against data from the UK, Germany and Peru, and run the model under simplified scenarios of primary succession and climate change. FUN is suitable for incorporation into a land surface scheme of a General Circulation Model and will be coupled with a soil model and dynamic global vegetation model as part of a land surface model (JULES).

The effect of EDTA on Helianthus annuus uptake, selectivity, and translocation of heavy metals when grown in Ohio, New Mexico and Colombia soils.

PubMed

Turgut, Cafer; Pepe, M Katie; Cutright, Teresa J

2005-02-01

The use of two EDTA concentrations for enhancing the bioavailability of cadmium, chromium, and nickel in three natural soils (Ohio, New Mexico and Colombia) was investigated. The resulting uptake, translocation and selectivity with Helianthus annuus after mobilization were also examined. In general, plants grown in the sandy-loam Ohio soil had a higher uptake that resulted in a selectivity and total metal content of Cd>Cr>Ni and 0.73 mg and Cr>Cd>Ni and 0.32 mg for 0.1 and 0.3 g kg-1 EDTA, respectively. With the silty-loam New Mexico soil, although the total metal uptake was not statistically different the EDTA level did alter the selectivity; Cd>Cr>Ni (0.1 g kg-1 EDTA) and Cd>Cr>Ni (0.3 g kg-1 EDTA). Conversely, with the Colombian (sandy clay loam) soil increasing the EDTA level resulted in a higher total metal uptake (0.62 mg) than the 0.1 g kg-1 (0.59 mg) treatment. For all three soils, the translocation of Cd was limited. Evaluating the mobile metal fraction with and without EDTA determined that the chelator was capable of overcoming mass transfer limitations associated with the expandable clay fraction in the soils. Root wash results and root biomass concentrations indicated that Cd sorption was occurring. Therefore limited Cd translocation was attributed to insufficient phytochelatin levels.

Phytoremediation of cadmium and zinc by Populus deltoids and Pinus tada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, M.; Houpis, J.; Johnson, K.

1998-12-31

Phytoremediation, the use of plants to uptake contaminants and thereby lower soil contamination, is an emerging alternative to the costly and often impractical conventional methods of soil remediation. There has been limited research in using trees for metal extraction, despite their high potential for remediating contaminated soils. The authors investigated the cadmium phytoextraction capability of Pinus taeda. Cadmium uptake was investigated using a randomized design with four replicates of each treatment. Seeds were germinated, grown for 60 days and treated with cadmium at 4 mg/L [supplied as cadmium nitrate tetrahydrate (Cd-(NO{sub 3})2x4H{sub 2}O)] or with potassium nitrate (KNO{sub 3}) asmore » a control. Seedlings were harvested at either seven or seventeen days. Metal analysis of plant tissues was conducted by atomic absorption spectroscopy following acid digestion. A phytoextraction coefficient was determined and data were analyzed using analysis of variance. P. taeda seedlings treated with cadmium contained significantly higher Cd tissue levels than control seedlings. Cd tissue levels did not differ significantly between seedlings harvested seven days and seedlings harvested seventeen days after treatment. Cd levels also differed significantly between all plant organs (leaves, stems and roots).« less

CO2 Fluxes Associated with Soil Organic C Stock Changes in the Mid-Continent Region of the U.S.

NASA Astrophysics Data System (ADS)

Ogle, S. M.; Paustian, K.; Easter, M.; Killian, K.; Williams, S.

2005-12-01

Regional CO2 sources and sinks need to be quantified in the terrestrial biosphere for basic understanding and policy development. Our objective was to quantify CO2 fluxes for the Mid-Continent Region of the US, including Iowa and neighboring areas in adjacent states, using a "bottom-up" simulation modeling approach. Soils represent an important potential sink for this largely agricultural region because of limited potential for CO2 uptake and storage in woody biomass. SOC stocks were estimated to have increased during the 1990s at a rate equivalent to 3.81 Tg CO2 yr-1, but with considerable sub-regional variation due to differences in land use and management patterns. Sinks were driven by conservation tillage adoption, enrollment in the Conservation Reserve Program, and conversion of annual crops to continuous hay or pasture. The dominant source of CO2 from soils in the Mid-Continent Region was attributed to drainage and cultivation of organic soils. Uncertainties in regional estimates were determined using a Monte Carlo Analysis and empirically-based uncertainty estimator, and the largest uncertainties were associated with estimating the fluxes from drained organic soils. A major research challenge is to verify the accuracy of these rates using "top-down" atmospheric budgets that are independent of the bottom-up inventory.

Biochar immobilizes soil-borne arsenic but not cationic metals in the presence of low-molecular-weight organic acids.

PubMed

Alozie, Nneka; Heaney, Natalie; Lin, Chuxia

2018-07-15

A batch experiment was conducted to examine the effects of biochar on the behaviour of soil-borne arsenic and metals that were mobilized by three low-molecular-weight organic acids. In the presence of citric acid, oxalic acid and malic acid at a molar concentration of 0.01M, the surface of biochar was protonated, which disfavours adsorption of the cationic metals released from the soil by organic acid-driven mobilization. In contrast, the oxyanionic As species were re-immobilized by the protonated biochar effectively. Biochar could also immobilize oxyanionic Cr species but not cationic Cr species. The addition of biochar increased the level of metals in the solution due to the release of the biochar-borne metals under attack by LMWOAs via cation exchange. Biochar could also have the potential to enhance reductive dissolution of iron and manganese oxides in the soil, leading to enhanced release of trace elements bound to these oxides. The findings obtained from this study have implications for evaluating the role of biochar in immobilizing trace elements in rhizosphere. Adsorption of cationic heavy metals on biochar in the presence of LMWOAs is unlikely to be a mechanism responsible for the impeded uptake of heavy metals by plants growing in heavy metal-contaminated soils. Copyright © 2018 Elsevier B.V. All rights reserved.

Evidences on the Ability of Mycorrhizal Genus Piloderma to Use Organic Nitrogen and Deliver It to Scots Pine

PubMed Central

Heinonsalo, Jussi; Sun, Hui; Santalahti, Minna; Bäcklund, Kirsi; Hari, Pertti; Pumpanen, Jukka

2015-01-01

Ectomycorrhizal (ECM) symbiosis has been proposed to link plant photosynthesis and soil organic matter (SOM) decomposition through the production of fungal enzymes which promote SOM degradation and nitrogen (N) uptake. However, laboratory and field evidence for the existence of these processes are rare. Piloderma sp., a common ECM genus in boreal forest soil, was chosen as model mycorrhiza for this study. The abundance of Piloderma sp. was studied in root tips and soil over one growing season and in winter. Protease production was measured from ectomycorrhiza and soil solution in the field and pure fungal cultures. We also tested the effect of Piloderma olivaceum on host plant organic N nutrition in the laboratory. The results showed that Piloderma sp. was highly abundant in the field and produced extracellular proteases, which correlated positively with the gross primary production, temperature and soil respiration. In the laboratory, Piloderma olivaceum could improve the ability of Pinus sylvestris L. to utilize N from extragenous proteins. We suggest that ECM fungi, although potentially retaining N in their hyphae, are important in forest C and N cycling due to their ability to access proteinaeous N. As Piloderma sp. abundance appeared to be seasonally highly variable, recycling of fungal-bound N after hyphal death may therefore be of primary importance for the N cycling in boreal ecosystems. PMID:26132469

Distribution and Ratios of 137Cs and K in Control and K-treated Coconut Trees at Bikini Island where Nuclear Test Fallout Occurred: Effects and Implications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robison, W L; Brown, P H; Stone, E L

Coconut trees growing on atolls of the Bikini Islands are on the margin of K deficiency because the concentration of exchangeable K in coral soil is very low ranging from only 20 to 80 mg kg{sup -1}. When provided with additional K, coconut trees absorb large quantities of K and this uptake of K significantly alters the patterns of distribution of {sup 137}Cs within the plant. Following a single K fertilization event, mean total K in trunks of K-treated trees is 5.6 times greater than in trunks of control trees. In contrast, {sup 137}Cs concentration in trunks of K-treated andmore » control trees is statistically the same while {sup 137}Cs is significantly lower in edible fruits of K treated trees. Within one year after fertilization (one rainy season), K concentration in soil is back to naturally, low concentrations, however, the tissue concentrations of K in treated trees stays very high internally in the trees for years while {sup 137}Cs concentration in treated trees remains very low in all tree compartments except for the trunk. Potassium fertilization did not change soil Cs availability. Mass balance calculations suggest that the fertilization event increased above ground plant K content by at least a factor of 5 or 2.2 kg. Potassium concentrations and content were higher in all organs of K fertilized trees with the greatest increases seen in organs that receive a portion of tissue K through xylem transport (trunk, fronds and fruit husks) and lowest in organs supplied predominantly with K via the phloem (palm heart, spathe, coco meat and fluid). {sup 137}Cesium concentrations and contents were dramatically lower in all organs of K treated trees with greatest proportional reductions observed in organs supplied predominantly with K via the phloem (palm heart, spathe, coco meat and fluid). All trees remobilize both K and {sup 137}Cs from fronds as they proceed toward senescence. In control trees the reduction in concentration of K and {sup 137}Cs in fronds as they age is logarithmic but K remobilization is linear in K-treated trees where K concentration is high. As a result of K treatment the {sup 137}Cs concentration in K-treated fronds is extremely low and constant with frond age. Fronds of K treated trees contain a greater amount of K than control tree fronds. As they fall to the ground and decay they provide a small continuing pool of K that is about 3% of the natural K in soil under the tree canopy. Results of K and {sup 137}Cs concentration and distribution in control and K-treated coconut trees suggest that the application of K reduces {sup 137}Cs uptake both in the short term immediately following K fertilization and in the long term, after soil K levels have returned to normal but while plant K stores remain high. These results suggests that high internal K concentration and not high soil K is primarily responsible for long-term reduction of {sup 137}Cs in edible fruits, and plays a significant role in limiting further uptake of {sup 137}Cs by roots, and affects allocation of {sup 137}Cs to edible fruits for years. Coconut trees are capable of luxury K accumulation when provided with excess K and in this example the additional K can effectively provide the K requirements of the plant for in excess of 10 years. The reduction of {sup 137}Cs uptake lasts for at least 10 y after K is last applied and greatly reduces the estimated radiation dose to people consuming local tree foods. Effectiveness and duration of K treatment provides important assurances that reduction in {sup 137}Cs is long term and the radiation dose from consuming local plant foods will remain low.« less

Distribution and ratios of 137Cs and K in control and K-treated coconut trees at Bikini Island where nuclear test fallout occurred: effects and implications.

PubMed

Robison, William L; Brown, Patrick H; Stone, Earl L; Hamilton, Terry F; Conrado, Cynthia L; Kehl, Steven

2009-01-01

Coconut trees growing on atolls of the Bikini Islands are on the margin of K deficiency because the concentration of exchangeable K in coral soil is very low, ranging from only 20 to 80mgkg(-1). When provided with additional K, coconut trees absorb large quantities of K and this uptake of K significantly alters the patterns of distribution of 137Cs within the plant. Following a single K fertilization event, mean total K in trunks of K-treated trees is 5.6 times greater than in trunks of control trees. In contrast, 137Cs concentration in trunks of K-treated and control trees is statistically the same while 137Cs is significantly lower in edible fruits of K-treated trees. Within one year after fertilization (one rainy season), K concentration in soil is back to naturally low concentrations. However, the tissue concentrations of K in treated trees stays very high internally in the trees for years while 137Cs concentration in treated trees remains very low in all tree compartments except for the trunk. Potassium fertilization did not change soil Cs availability. Mass balance calculations suggest that the fertilization event increased above ground plant K content by at least a factor of 5 (2.2kg). Potassium concentrations and content were higher in all organs of K-fertilized trees with the greatest increases seen in organs that receive a portion of tissue K through xylem transport (trunk, fronds and fruit husks) and lowest in organs supplied predominantly with K via the phloem (palm heart, spathe, coco meat and fluid). The 137Cesium concentrations and contents were dramatically lower in all organs of K-treated trees with greatest proportional reductions observed in organs supplied predominantly with K via the phloem (palm heart, spathe, coco meat and fluid). All trees remobilize both K and 137Cs from fronds as they proceed toward senescence. In control trees the reduction in concentration of K and 137Cs in fronds as they age is logarithmic, but K remobilization is linear in K-treated trees where K concentration is high. As a result of K treatment the 137Cs concentration in K-treated fronds is extremely low and constant with frond age. Fronds of K-treated trees contain a greater amount of K than control tree fronds. As they fall to the ground and decay they provide a small continuing pool of K that is about 3% of the natural K in soil under the tree canopy. Results of K and 137Cs concentration and distribution in control and K-treated coconut trees suggest that the application of K reduces 137Cs uptake both in the short term immediately following K fertilization and in the long term, after soil K levels have returned to normal but while plant K stores remain high. These results suggest that high internal K concentration and not high soil K is primarily responsible for long-term reduction of 137Cs in edible fruits, play a significant role in limiting further uptake of 137Cs by roots, and affects allocation of 137Cs to edible fruits for years. Coconut trees are capable of luxury K accumulation when provided with excess K and in this example the additional K can effectively provide the K requirements of the plant for in excess of 10y. The reduction of 137Cs uptake lasts for at least 10y after K is last applied and greatly reduces the estimated radiation dose to people consuming local tree foods. Effectiveness and duration of K treatment provide important assurances that reduction in 137Cs is long term and the radiation dose from consuming local plant foods will remain low.

Soil Biogeochemistry in a Changing Climate: Effect of Snow Removal

NASA Astrophysics Data System (ADS)

Patel, K.; Tatariw, C.; Fernandez, I. J.; Macrae, J. D.; Ohno, T.

2016-12-01

Winter snowpack plays an important role in ecosystem functioning, thermally insulating the subnivean soil from freezing temperatures. Wintertime microbial mineralization of organic material results in accumulation of nutrients under the snowpack, which are available post-melt for plant root uptake. The northeastern United States has experienced declining snow accumulation, and climate models project this trend will continue in the future. Intermittent and reduced snow cover increases soil freezing and frost damage, which can have implications on spring nutrient availability and forest productivity. We conducted a 2-year snow removal experiment in the Dwight B. DeMeritt Forest at the University of Maine to study subnivean winter processes, and to examine the effect of a decreased snowpack on soil winter and spring biogeochemistry. Surface organic soils were collected during winter and spring of 2015 and 2016, years with sharply contrasting snow accumulation, to track temporal changes in nutrient dynamics as the system evolved from under the snowpack. Laboratory extractions and incubations were performed to quantify the inorganic available nitrogen, dissolved organic carbon (DOC), and potential net N-mineralization (PNNM) in field moist soils. Snow removal resulted in decreased winter soil temperatures (2-8°C colder than the reference plots). There was an increased incidence of rain-on-soil events in the winter, forming concrete frost. Freeze-thaw cycles in the treatment plots resulted in higher NH4-N and DOC concentrations, but lower PNNM, compared to the reference plots. Treatment effects on DOC and NH4-N concentrations were not seen in the spring, although the effects on PNNM persisted. Our findings demonstrated that freeze-thaw cycles play an important role in the timing and magnitude of soil nutrient availability during the vernal transition. Understanding these processes becomes increasingly important when defining forest ecosystem response to a changing climate.

Modulation of hexavalent chromium toxicity on Οriganum vulgare in an acidic soil amended with peat, lime, and zeolite.

PubMed

Antoniadis, Vasileios; Zanni, Anna A; Levizou, Efi; Shaheen, Sabry M; Dimirkou, Anthoula; Bolan, Nanthi; Rinklebe, Jörg

2018-03-01

Dynamics of chromate (Cr(VI)) in contaminated soils may be modulated by decreasing its phytoavailability via the addition of organic matter-rich amendments, which might accelerate Cr(VI) reduction to inert chromite (Cr(III)) or high-cation exchange capacity amendments. We studied Cr(VI) phytoavailability of oregano in a Cr(VI)-spiked acidic soil non-treated (S) and treated with peat (SP), lime (SL), and zeolite (SZ). The addition of Cr(VI) increased the concentrations of Cr(VI) and Cr(III) in soils and plants, especially in the lime-amended soil. The plant biomass decreased in the lime-amended soil compared to the un-spiked soil (control) due to decreased plant phosphorus concentrations and high Cr(VI) concentrations in root at that treatment. Oregano in the peat-amended soil exhibited significantly less toxic effects, due to the role of organic matter in reducing toxic Cr(VI) to Cr(III) and boosted plant vigour in this treatment. In the lime-amended soil, the parameters of soil Cr(VI), soil Cr(III), and root Cr(III) increased significantly compared to the non-amended soil, indicating that Cr(VI) reduction to Cr(III) was accelerated at high pH. Added zeolite failed to decreased Cr(VI) level to soil and plant. Oregano achieved a total uptake of Cr(III) and Cr(VI) of 0.275 mg in plant kg -1 soil in a pot in the non-amended soil. We conclude that peat as soil amendment might be considered as a suitable option for decreasing Cr(VI) toxicity in soil and plant, and that oregano as tolerant plant species has a certain potential to be used as a Cr accumulator. Copyright © 2017 Elsevier Ltd. All rights reserved.

Calcium depletion in a Southeastern United States forest ecosystem

USGS Publications Warehouse

Huntington, T.G.; Hooper, R.P.; Johnson, C.E.; Aulenbach, Brent T.; Cappellato, R.; Blum, A.E.

2000-01-01

Forest soil Ca depletion through leaching and vegetation uptake may threaten long-term sustainability of forest productivity in the southeastern USA. This study was conducted to assess Ca pools and fluxes in a representative southern Piedmont forest to determine the soil Ca depletion rate. Soil Ca storage, Ca inputs in atmospheric deposition, and outputs in soil leaching and vegetation uptake were investigated at the Panola Mountain Research Watershed (PMRW) near Atlanta, GA. Average annual outputs of 12.3 kg ha-1 yr-1 in uptake into merchantable wood and 2.71 kg ha-1 yr-1 soil leaching exceeded inputs in atmospheric deposition of 2.24 kg ha-1 yr-1. The annual rate of Ca uptake into merchantable wood exceeds soil leaching losses by a factor of more than five. The potential for primary mineral weathering to provide a substantial amount of Ca inputs is low. Estimates of Ca replenishment through mineral weathering in the surface 1 m of soil and saprolite was estimated to be 0.12 kg ha-1 yr-1. The weathering rate in saprolite and partially weathered bedrock below the surface 1 m is similarly quite low because mineral Ca is largely depleted. The soil Ca depletion rate at PMRW is estimated to be 12.7 kg ha-1 yr-1. At PMRW and similar hardwood-dominated forests in the Piedmont physiographic province, Ca depletion will probably reduce soil reserves to less than the requirement for a merchantable forest stand in ???80 yr. This assessment and comparable analyses at other southeastern USA forest sites suggests that there is a strong potential for a regional problem in forest nutrition in the long term.Forest soil Ca depletion through leaching and vegetation uptake may threaten long-term sustainability of forest productivity in the southeastern USA. This study was conducted to assess Ca pools and fluxes in a representative southern Piedmont forest to determine the soil Ca depletion rate. Soil Ca storage, Ca inputs in atmospheric deposition, and outputs in soil leaching and vegetation uptake were investigated at the Panola Mountain Research Watershed (PMRW) near Atlanta, GA. Average annual outputs of 12.3 kg ha-1 yr-1 in uptake into merchantable wood and 2.71 kg ha-1 yr-1 soil leaching exceeded inputs in atmospheric deposition of 2.24 kg ha-1 yr-1. The annual rate of Ca uptake into merchantable wood exceeds soil leaching losses by a factor of more than five. The potential for primary mineral weathering to provide a substantial amount of Ca inputs is low. Estimates of Ca replenishment through mineral weathering in the surface 1 m of soil and saprolite was estimated to be 0.12 kg ha-1 yr-1. The weathering rate in saprolite and partially weathered bedrock below the surface 1 m is similarly quite low because mineral Ca is largely depleted. The soil Ca depletion rate at PMRW is estimated to be 12.7 kg ha-1 yr-1. At PMRW and similar hardwood-dominated forests in the Piedmont physiographic province, Ca depletion will probably reduce soil reserves to less than the requirement for a merchantable forest stand in ???80 yr. This assessment and comparable analyses at other southeastern USA forest sites suggests that there is a strong potential for a regional problem in forest nutrition in the long term.

Estimating Grass-Soil Bioconcentration of Munitions Compounds from Molecular Structure.

PubMed

Torralba Sanchez, Tifany L; Liang, Yuzhen; Di Toro, Dominic M

2017-10-03

A partitioning-based model is presented to estimate the bioconcentration of five munitions compounds and two munition-like compounds in grasses. The model uses polyparameter linear free energy relationships (pp-LFERs) to estimate the partition coefficients between soil organic carbon and interstitial water and between interstitial water and the plant cuticle, a lipid-like plant component. Inputs for the pp-LFERs are a set of numerical descriptors computed from molecular structure only that characterize the molecular properties that determine the interaction with soil organic carbon, interstitial water, and plant cuticle. The model is validated by predicting concentrations measured in the whole plant during independent uptake experiments with a root-mean-square error (log predicted plant concentration-log observed plant concentration) of 0.429. This highlights the dominant role of partitioning between the exposure medium and the plant cuticle in the bioconcentration of these compounds. The pp-LFERs can be used to assess the environmental risk of munitions compounds and munition-like compounds using only their molecular structure as input.

[Effects of sand burial on fluxes of greenhouse gases from the soil covered by biocrust in an arid desert region.

PubMed

Teng, Jia Ling; Jia, Rong Liang; Hu, Yi Gang; Xu, Bing Xin; Chen, Meng Chen; Zhao, Yun

2016-03-01

Based on the measurements of the fluxes of CO 2 , CH 4 and N 2 O from the soil covered by two types of biocrusts dominated separately by moss and algae-lichen, followed by 0 (control), 1 (shallow) and 10 (deep) mm depths of sand burial treatments, we studied the effects of sand burial on greenhouse gases fluxes and their relationships with soil temperature and moisture at Shapotou, southeastern edge of the Tengger Desert. The results showed that sand burial had significantly positive effects on CO 2 emission fluxes and CH 4 uptake fluxes of the soil covered by the two types of biocrusts, but imposed differential effects on N 2 O fluxes depending on the type of biocrust and the depth of burial. Deep burial (10 mm) dramatically increased the N 2 O uptake fluxes of the soil co-vered by the two types of biocrusts, while shallow burial (1 mm) decreased the N 2 O uptake flux of the soil co-vered by moss crust only and had no significant effects on N 2 O uptake flux of the soil covered by algae-lichen crust. In addition, CO 2 fluxes of the two biocrusts were closely related to the soil temperature and soil moisture, thereby increasing with the raised soil surface temperature and soil moisture caused by sand burial. However, the relationships of burial-induced changes of soil temperature and moisture with the changes in the other two greenhouse gases fluxes were not evident, indicating that the variations of soil temperature and moisture caused by sand burial were not the key factors affecting the fluxes of CH 4 and N 2 O of the soil covered by the two types of biocrusts.

Nitrogen nutrition of poplar trees.

PubMed

Rennenberg, H; Wildhagen, H; Ehlting, B

2010-03-01

Many forest ecosystems have evolved at sites with growth-limiting nitrogen (N) availability, low N input from external sources and high ecosystem internal cycling of N. By contrast, many poplar species are frequent constituents of floodplain forests where they are exposed to a significant ecosystem external supply of N, mainly nitrate, in the moving water table. Therefore, nitrate is much more important for N nutrition of these poplar species than for many other tree species. We summarise current knowledge of nitrate uptake and its regulation by tree internal signals, as well as acquisition of ammonium and organic N from the soil. Unlike herbaceous plants, N nutrition of trees is sustained by seasonal, tree internal cycling. Recent advances in the understanding of seasonal storage and mobilisation in poplar bark and regulation of these processes by temperature and daylength are addressed. To explore consequences of global climate change on N nutrition of poplar trees, responses of N uptake and metabolism to increased atmospheric CO(2) and O(3) concentrations, increased air and soil temperatures, drought and salt stress are highlighted.

A new mechanistic framework to predict OCS fluxes in soils

NASA Astrophysics Data System (ADS)

Sauze, Joana; Ogee, Jérôme; Launois, Thomas; Kesselmeier, Jürgen; Van Diest, Heidi; Wingate, Lisa

2015-04-01

A better description of the amplitude of photosynthetic and respiratory gross CO2 fluxes at large scales is needed to improve our predictions of the current and future global CO2 cycle. Carbonyl sulfide (COS) is the most abundant sulphur gas in the atmosphere and has been proposed as a new tracer of gross photosynthesis, as the uptake of COS from the atmosphere is dominated by the activity of carbonic anhydrase (CA), an enzyme abundant in leaves that also catalyses CO2 hydration during photosynthesis. However, soils also exchange COS with the atmosphere and there is growing evidence that this flux must also be accounted for in atmospheric budgets. In this context a new mechanistic description of soil-atmosphere COS exchange is clearly needed. Soils can take up COS from the atmosphere as the soil biota also contain CA, and COS emissions from soils have also been reported in agricultural fields or anoxic soils. Previous studies have also shown that soil COS fluxes present an optimum soil water content and soil temperature. Here we propose a new mechanistic framework to predict the fluxes of COS between the soils and the atmosphere. We describe the COS soil budget by a first-order reaction-diffusion-production equation, assuming that the hydrolysis of COS by CA is total and irreversible. To describe COS diffusion through the soil matrix, we use different formulations of soil air-filled pore space and temperature, depending on the turbulence level above the soil surface. Using this model we are able to explain the observed presence of an optimum temperature for soil COS uptake and show how this optimum can shift to cooler temperatures in the presence of soil COS emissions. Our model can also explain the observed optimum with soil moisture content previously described in the literature (e.g. Van Diest & Kesselmeier, 2008) as a result of diffusional constraints on COS hydrolysis. These diffusional constraints are also responsible for the response of COS uptake to soil weight and depth observed by Kesselmeier et al. (1999). In order to simulate the exact COS uptake rates and patterns observed on several soils collected from a range of biomes (Van Diest & Kesselmeier, 2008) different CA activities had to be evoked in each soil type, coherent with the expected soil microbial population size and diversity. A better description of the drivers governing soil CA activity and COS emissions from soils is needed before incorporating our new mechanistic model of soil-atmosphere COS uptake in large-scale ecosystem models and COS atmospheric budgets.

Foliar concentrations of volunteer willows growing on polluted sediment-derived sites versus sites with baseline contamination levels.

PubMed

Vandecasteele, Bart; Quataert, Paul; De Vos, Bruno; Tack, Filip M G; Muys, Bart

2004-04-01

Many alluvial soils along navigable waterways are affected by disposal of dredged sediments or overbank sedimentation and contain metal concentrations that are elevated compared to baseline levels. Uptake patterns for metals and other elements by several volunteer Salix species growing on these sites were determined during a growing season in field plots and compared with the same species growing on soils with baseline contamination levels. For Cd and Zn, foliar concentrations were clearly higher on dredged sediment landfills. Uptake patterns differed significantly between species. A high uptake of Mn and low uptake of Cu, K and S in S. cinerea was attributed to wetland soil chemistry. Site effects on metal uptake were evaluated in more detail for Salix cinerea and S. alba growing on different sediment-derived sites under field conditions. Foliar Cd concentrations were higher in S. cinerea than in S. alba. This appeared to be a genetic feature not influenced by soil chemical properties, as it was observed both on clean sites and polluted sediment-derived sites. For S. cinerea, soil chemistry was reflected in foliar concentrations, while foliar Cd concentrations and bioavailability were found to be independent of the thickness of the polluted horizon. Dredged sediment landfills and freshwater tidal marshes with comparable Cd soil pollution had significantly different foliar Cd concentrations.

Zn uptake behavior of rice genotypes and its implication on grain Zn biofortification

PubMed Central

Johnson-Beebout, Sarah E.; Goloran, Johnvie Bayang; Rubianes, Francis H. C.; Jacob, Jack D. C.; Castillo, Oliver B.

2016-01-01

Understanding Zn uptake dynamics is critical to rice grain Zn biofortification. Here we examined soil Zn availability and Zn uptake pathways as affected by genotype (high-grain Zn varieties IR69428 and IR68144), Zn fertilization and water management in two pot experiments. Results showed significant interactions (P < 0.05) between genotypes and Zn fertilization on DTPA (diethylenetriaminepentaacetic acid)-extractable soil Zn from early tillering to flowering. DTPA-extractable Zn in soils grown with IR69428 was positively correlated with stem (r = 0.78, P < 0.01), flagleaf (r = 0.60, P < 0.01) and grain (r = 0.67, P < 0.01) Zn concentrations, suggesting improved soil Zn availability and continued soil Zn uptake by IR69428 even at maturity. Conversely for IR68144, DTPA-extractable Zn was positively correlated only with leaf Zn uptake (r = 0.60, P < 0.01) at active tillering, indicating dependence on remobilization for grain Zn loading. Furthermore, the highest grain Zn concentration (P < 0.05) was produced by a combination of IR69428 and Zn fertilization applied at panicle initiation (38.5 μg g−1) compared with other treatments (P < 0.05). The results highlight that Zn uptake behavior of a rice genotype determines the fate of Zn from the soil to the grain. This has implications on overcoming Zn translocation barriers between vegetative parts and grains, and achieving grain Zn biofortification targets (30.0 μg g−1). PMID:27910900

Influence of fly ash aided phytostabilisation of Pb, Cd and Zn highly contaminated soils on Lolium perenne and Trifolium repens metal transfer and physiological stress.

PubMed

Lopareva-Pohu, Alena; Verdin, Anthony; Garçon, Guillaume; Lounès-Hadj Sahraoui, Anissa; Pourrut, Bertrand; Debiane, Djouher; Waterlot, Christophe; Laruelle, Frédéric; Bidar, Géraldine; Douay, Francis; Shirali, Pirouz

2011-06-01

Due to anthropogenic activities, large extends of soils are highly contaminated by Metal Trace Element (MTE). Aided phytostabilisation aims to establish a vegetation cover in order to promote in situ immobilisation of trace elements by combining the use of metal-tolerant plants and inexpensive mineral or organic soil amendments. Eight years after Coal Fly Ash (CFA) soil amendment, MTE bioavailability and uptake by two plants, Lolium perenne and Trifolium repens, were evaluated, as some biological markers reflecting physiological stress. Results showed that the two plant species under study were suitable to reduce the mobility and the availability of these elements. Moreover, the plant growth was better on CFA amended MTE-contaminated soils, and the plant sensitivity to MTE-induced physiological stress, as studied through photosynthetic pigment contents and oxidative damage was lower or similar. In conclusion, these results supported the usefulness of aided phytostabilisation of MTE-highly contaminated soils. Copyright © 2011 Elsevier Ltd. All rights reserved.