Three-dimensional Effects on Formation of a "Tiger Tail" of Turbidity in Lake Biwa, Japan, following a Typhoon.

NASA Astrophysics Data System (ADS)

Wells, J. C.; Auger, G.

2016-02-01

Lake Biwa, Japan, supplies water to 14.5 million in Kyoto and beyond. The North Basin's dimensions of roughly 20×40 km, and maximal depth of 104 m, facilitate geostrophic gyres during the stratified season. Our motivation is pollution by large-scale runoff, possibly combined with hypothetical earthquake-induced damage. This report focuses on the days following Typhoon Man-Yi, which dumped record rainfall in our area around September 16, 2013. Clear skies allowed unobstructed visible and IR satellite images during the period Sept 17-19. The image on the left of the attached file is a near-IR MODIS image taken at 03:54 UTC on Sept 17th, in which turbid water appears milky. There is a thin filament of turbidity extending from the Ado River delta on the western shore northeast toward Chikubu Island near the north shore. The structure of turbidity near the tip of this filament, taken together with a corresponding image take 97 minutes earlier, strongly suggests that the flow at the tip is decelerating as it approaches a saddlepoint-like structure to its north-east. This aspect, and the overall shape, are strongly reminiscent of the "Tiger Tail" of surface oil that was observed after the Deepwater Horizon disaster and analyzed mathematically in terms of Lagrangian Coherent Structures by Olascoaga et al (2012 ; PNAS 109 (13): 4738-4743). We have applied the SUNTANS ocean model, in hydrostatic mode, to simulate the flow in the Lake in the period around Typhoon Man-Yi. Comparison of simulation results with temperatures measured in-situ at six depths every six hours near the Ado River mouth, and with available data from MODIS images (cf. right side of image file) lends credibility to the simulation results. Notably, an upwelling was hindcasted by the model to occur near the north shore during the night of Sept 16-17, and this matches MODIS estimates of SST distribution. We find that the upwelling water strongly limits the initially northward motion of the sediment from the Ado River, thus representing a transverse, strongly three-dimensional effect that accordingly forms this turbid river plume into a filament. Associated effects at this time, and during the following hours and days, will be discussed.

Analysis of southeast Australian zooplankton observations of 1938-42 using synoptic oceanographic conditions

NASA Astrophysics Data System (ADS)

Baird, Mark E.; Everett, Jason D.; Suthers, Iain M.

2011-03-01

The research vessel Warreen obtained 1742 planktonic samples along the continental shelf and slope of southeast Australia from 1938-42, representing the earliest spatially and temporally resolved zooplankton data from Australian marine waters. In this paper, Warreen observations along the southeast Australian seaboard from 28°S to 38°S are interpreted based on synoptic meteorological and oceanographic conditions and ocean climatologies. Meteorological conditions are based on the NOAA-CIRES 20th Century Reanalysis Project; oceanographic conditions use Warreen hydrological observations, and the ocean climatology is the CSIRO Atlas of Regional Seas. The Warreen observations were undertaken in waters on average 0.45 °C cooler than the climatological average, and included the longest duration El Niño of the 20th century. In northern New South Wales (NSW), week time-scale events dominate zooplankton response. In August 1940 an unusual winter upwelling event occurred in northern NSW driven by a stronger than average East Australian Current (EAC) and anomalous northerly winds that resulted in high salp and larvacean abundance. In January 1941 a strong upwelling event between 28° and 33°S resulted in a filament of upwelled water being advected south and alongshore, which was low in zooplankton biovolume. In southern NSW a seasonal cycle in physical and planktonic characteristics is observed. In January 1941 the poleward extension of the EAC was strong, advecting more tropical tunicate species southward. Zooplankton abundance and distribution on the continental shelf and slope are more dependent on weekly to monthly timescales on local oceanographic and meteorological conditions than continental-scale interannual trends. The interpretation of historical zooplankton observations of the waters off southeast Australia for the purpose of quantifying anthropogenic impacts will be improved with the use of regional hindcasts of synoptic ocean and atmospheric weather that can explain some of the physically forced natural variability.

Coastal upwelling south of Madagascar: Temporal and spatial variability

NASA Astrophysics Data System (ADS)

Ramanantsoa, Juliano D.; Krug, M.; Penven, P.; Rouault, M.; Gula, J.

2018-02-01

Madagascar's southern coastal marine zone is a region of high biological productivity which supports a wide range of marine ecosystems, including fisheries. This high biological productivity is attributed to coastal upwelling. This paper provides new insights on the structure, variability and drivers of the coastal upwelling south of Madagascar. Satellite remote sensing is used to characterize the spatial extent and strength of the coastal upwelling. A front detection algorithm is applied to thirteen years of Multi-scale Ultra-high Resolution (MUR) Sea Surface Temperatures (SST) and an upwelling index is calculated. The influence of winds and ocean currents as drivers of the upwelling is investigated using satellite, in-situ observations, and a numerical model. Results reveal the presence of two well-defined upwelling cells. The first cell (Core 1) is located in the southeastern corner of Madagascar, and the second cell (Core 2) is west of the southern tip of Madagascar. These two cores are characterized by different seasonal variability, different intensities, different upwelled water mass origins, and distinct forcing mechanisms. Core 1 is associated with a dynamical upwelling forced by the detachment of the East Madagascar Current (EMC), which is reinforced by upwelling favourable winds. Core 2 appears to be primarily forced by upwelling favourable winds, but is also influenced by a poleward eastern boundary flow coming from the Mozambique Channel. The intrusion of Mozambique Channel warm waters could result in an asynchronicity in seasonality between upwelling surface signature and upwelling favourables winds.

On the Past, Present, and Future of Eastern Boundary Upwelling Systems

NASA Astrophysics Data System (ADS)

Bograd, S. J.; Black, B.; Garcia-Reyes, M.; Rykaczewski, R. R.; Thompson, S. A.; Turley, B. D.; van der Sleen, P.; Sydeman, W. J.

2016-12-01

Coastal upwelling in Eastern Boundary Upwelling Systems (EBUS) drives high productivity and marine biodiversity and supports lucrative commercial fishing operations. Thus there is significant interest in understanding the mechanisms underlying variations in the upwelling process, its drivers, and potential changes relative to global warming. Here we review recent results from a combination of regional and global observations, reanalysis products, and climate model projections that describe variability in coastal upwelling in EBUS. Key findings include: (1) interannual variability in California Current upwelling occurs in two orthogonal seasonal modes: a winter/early spring mode dominated by interannual variability and a summer mode dominated by long-term increasing trend; (2) there is substantial coherence in year-to-year variability between this winter/spring upwelling mode and upper trophic level demographic processes, including fish growth rates (rockfish and salmon) and seabird phenology, breeding success and survival; (3) a meta-analysis of existing literature suggests consistency with the Bakun (1990) hypothesis that rising global greenhouse-gas concentrations would result in upwelling-favorable wind intensification; however, (4) an ensemble of coupled, global ocean-atmosphere models finds limited evidence for intensification of upwelling-favorable winds over the 21st century, although summertime winds near the poleward boundaries of climatalogical upwelling zones are projected to intensify. We will also review a new comparative research program between the California and Benguela Upwelling Systems, including efforts to understand patterns of change and variation between climate, upwelling, fish, and seabirds.

Air-Sea Interaction in the Somali Current Region

NASA Astrophysics Data System (ADS)

Jensen, T. G.; Rydbeck, A.

2017-12-01

The western Indian Ocean is an area of high eddy-kinetic energy generated by local wind-stress curl, instability of boundary currents as well as Rossby waves from the west coast of India and the equatorial wave guide as they reflect off the African coast. The presence of meso-scale eddies and coastal upwelling during the Southwest Monsoon affects the air-sea interaction on those scales. The U.S. Navy's Coupled Ocean-Atmosphere Mesoscale Prediction System (COAMPS) is used to understand and quantify the surface flux, effects on surface waves and the role of Sea Surface Temperature anomalies on ocean-atmosphere coupling in that area. The COAMPS atmosphere model component with 9 km resolution is fully coupled to the Navy Coastal Ocean Model (NCOM) with 3.5 km resolution and the Simulating WAves Nearshore (SWAN) wave model with 10 km resolution. Data assimilation using a 3D-variational approach is included in hindcast runs performed daily since June 1, 2015. An interesting result is that a westward jet associated with downwelling equatorial Rossy waves initiated the reversal from the southward Somali Current found during the northeast monsoon to a northward flow in March 2016 more than a month before the beginning of the southwest monsoon. It is also found that warm SST anomalies in the Somali Current eddies, locally increase surface wind speed due to an increase in the atmospheric boundary layer height. This results in an increase in significant wave height and also an increase in heat flux to the atmosphere. Cold SST anomalies over upwelling filaments have the opposite impacts on air-sea fluxes.

Impact of oceanic submesoscale coherent structures on marine top predators: new tools and challenges

NASA Astrophysics Data System (ADS)

Tew-Kai, E.; Sudre, J.; Gremillet, D.; Yahia, H.; Rossi, V.; Hernandez-Garcia, E.; López, C.; Marsac, F.; Weimerskirch, H.; Garçon, V.

2011-12-01

In recent years it appears that meso- and submesoscale features (fronts, eddies, filaments) in surface ocean flow have a crucial influence on marine ecosystems. Their dynamics partly control the foraging behaviour and the movements of marine top. One of the challenges in ecology is to define critical habitats and understand the rules of habitat selection. Recently new tools for detection of coherent structures at submesoscale open the way for new studies never investigated before in marine ecology. Through two examples we highlight novel research on the importance of submesoscale structures for the spatial distribution of marine top predators. We studied two seabird populations with contrasting characteristics: Frigatebirds in the Mozambique Channel, and Cape gannets in the Benguela upwelling off southern Africa. Frigatebirds are mainly offshore birds while Cape gannets do not venture beyond the continental shelf. For these two studies, we used products derived from remote sensing data, to describe submesoscale coherent structures (<10km). In the first example, using Finite-Size Lyapunov Exponents (FSLE), we have identified Lagrangian coherent structures (LCSs) present in the surface flow of the Mozambique Channel resulting from an intense mesoscale activity. By comparing seabird satellite positions with LCSs locations, we demonstrate that frigatebirds track precisely these structures in the Mozambique Channel, providing the first evidence that a top predator is able to track these FSLE ridges to locate food patches. Although many questions remain unanswered, this work remains a pioneering on this topic. Despite the interest of FSLE, they are limited to offshore areas due to altimetry products limitation on continental shelves. However, many seabirds operate in coastal areas undergoing stronger anthropogenic pressures, such as Cape gannets off South Africa. The Benguela system is characterized by an upwelling inhabited by numerous fronts and filaments that very likely have a strong impact on seabird spatial distribution, and it was not possible to implement FSLE in this area. Thus, we used a newly developed method based on the singularity exponents calculated from remotely sensed data of ocean colour and SST, which delivers a precise picture of meso and submeso-scale structures off the coast. Preliminary results on understanding the rules of habitat selection by Cape gannets, and contribution to the conservation of this endangered species will be presented.

Upwelling Dynamic Based on Satellite and INDESO Data in the Flores Sea

NASA Astrophysics Data System (ADS)

Kurniawan, Reski; Suriamihardja, D. A.; Hamzah Assegaf, Alimuddin

2018-03-01

Upwelling phenomenon is crucial to be forecasted, mainly concerning the information of potential fishery areas. Utilization of calibrated model for recorded upwelling such as INDESO gives benefit for historical result up to the present time. The aim of this study is to estimate areas and seasons of upwelling occurrences in the Flores Sea using data assimilation of satellite and modeling result. This study uses sea surface temperature, chlorophyll-a data from level 3 of MODIS image and sea surface height from satellite Jason-2 monthly for three years (2014-2016) and INDESO model data for sea surface temperature, sea surface height, and chlorophyll-a daily for three years (2014-2016). The upwelling is indicated by declining of sea surface temperature, sea surface height and increasing of chlorophyll-a. Verification is conducted by comparing the model result with recorded MODIS satellite image. The result shows that the area of southern Makassar Strait having occurrences of upwelling phenomenon every year starting in June, extended to July and August. The strongest upwelling occurred in 2015 covering more or less the area of 23,000 km2. The relation of monthly data of satellite has significantly correlated with daily data of INDESO model

Relative contributions of local wind and topography to the coastal upwelling intensity in the northern South China Sea

NASA Astrophysics Data System (ADS)

Wang, Dongxiao; Shu, Yeqiang; Xue, Huijie; Hu, Jianyu; Chen, Ju; Zhuang, Wei; Zu, TingTing; Xu, Jindian

2014-04-01

Topographically induced upwelling caused by the interaction between large-scale currents and topography was observed during four cruises in the northern South China Sea (NSCS) when the upwelling favorable wind retreated. Using a high-resolution version of the Princeton Ocean Model, we investigate relative contributions of local wind and topography to the upwelling intensity in the NSCS. The results show that the topographically induced upwelling is sensitive to alongshore large-scale currents, which have an important contribution to the upwelling intensity. The topographically induced upwelling is comparable with the wind-driven upwelling at surface and has a stronger contribution to the upwelling intensity than the local wind does at bottom in the near-shore shelf region. The widened shelf to the southwest of Shanwei and west of the Taiwan Banks intensifies the bottom friction, especially off Shantou, which is a key factor for topographically induced upwelling in terms of bottom Ekman transport and Ekman pumping. The local upwelling favorable wind enhances the bottom friction as well as net onshore transport along the 50 m isobath, whereas it has less influence along the 30 m isobath. This implies the local wind is more important in upwelling intensity in the offshore region than in the nearshore region. The contribution of local upwelling favorable wind on upwelling intensity is comparable with that of topography along the 50 m isobath. The effects of local upwelling favorable wind on upwelling intensity are twofold: on one hand, the wind transports surface warm water offshore, and as a compensation of mass the bottom current transports cold water onshore; on the other hand, the wind enhances the coastal current, and the bottom friction in turn increases the topographically induced upwelling intensity.

Hematite-coated microfossils: primary ecological fingerprint or taphonomic oddity of the Paleoproterozoic?

PubMed

Shapiro, R S; Konhauser, K O

2015-05-01

Microfossils belonging to the 1.88-billion-year-old 'Gunflint-biota' are preserved as carbonaceous and hematitic filaments and spheres that are believed to represent ancient chemolithoautotrophic Fe(II) oxidizing bacteria that grew above a chemocline where ferruginous seawater upwelled into shallow, oxygenated waters. This 'biological' model posits that hematite formed during burial from dewatering of the precursor ferric oxyhydroxides that encrusted Fe(II)-oxidizing bacteria. Here, we present an alternate 'taphonomic' model in which iron-rich groundwaters discharged into buried stromatolites; thus, the mineralization reactions are more informative of diagenetic processes than they are for primary marine conditions. We sampled centimeter-scale columnar stromatolites from both the lower and upper stromatolite horizons of the Biwabik and Gunflint formations, across a range of metamorphic gradients including unaltered to prehnite-pumpellyite taconite, supergene altered ore, and amphibolite-pyroxene grade contact-metamorphic zones. Fossils are rare to very rare and comprise curved filaments that exist in clusters with similar orientations. The filaments from throughout the Biwabik are similar to well-preserved carbonaceous Gunflintia from Ontario. Spheres of Huroniospora are also found in both formations. Microfossils from the least altered sections are preserved as carbon. Prehnite-pumpellyite samples are composed of either carbon or hematite (Fe2 O3 ). Within the contact aureole, filaments are densely coated by magnetite (Fe3 O4 ); the highest grade samples are secondarily oxidized to martite. The consistency in stromatolite microstructure and lithofacies throughout the metamorphic grades suggests they formed under similar environmental conditions. Post-depositional alteration led to replacement of the carbon by iron oxide. The facies association, filament distribution, and lack of branching and attached spherical cells argue against Gunflintia being a direct analogue to common marine, chemolithoautotrophic Fe(II)-oxidizing bacteria. Instead, we propose that the presence of hematite-coated microfossils is a reflection of taphonomic processes and does not necessarily reflect the byproduct of an original microbial ecosystem. © 2015 John Wiley & Sons Ltd.

Long-time observation of annual variation of Taiwan Strait upwelling in summer season

NASA Astrophysics Data System (ADS)

Tang, D. L.; Kawamura, H.; Guan, L.

The Taiwan Strait is between Taiwan Island and Mainland China, where several upwelling zones are well known for good fishing grounds. Earlier studies in the strait have been conducted on detecting upwelling by ship measurements with short-term cruises, but long-term variations of upwelling in this region are not understood. The present paper examines satellite images for a long-time observation of two major upwelling zones in the Taiwan Strait: Taiwan Bank Upwelling (TBU) and Dongshan Upwelling (DSU). Sea surface temperature (SST) and chlorophyll a (Chl-a) images have been analyzed for summer months (June, July, and August) from 1980 to 2002. Results reveal annual variation of two upwelling zones. These two upwelling zones occur every year characterized with distinct low water temperature and high Chl-a concentrations. During the period from 1989 to 1998, SST is found to be 1.15 °C lower in TBU, and 1.42 °C lower in the DSU than the Taiwan Strait. The size of DSU has been found to be larger during summer of 1989, 1990, 1993 and 1995; TBU has been found to be weak during summer of 1994 and 1997. Ocean color images obtained from CZCS, OCI, and SeaWiFS also show high Chl-a concentrations (0.8-2.5 mg m-3) in two upwelling zones, which coincide with low SST in terms of location, shape, and time. These high Chl-a concentrations in TBU and DSU may be related to upwelling waters that bring nutrients from bottom to surface. The present results also show the potential of using satellite data for monitoring of ocean environment for long time period.

Biological and physical oceanographic observations pertaining to the trawl fishery in a region of persistent coastal upwelling

NASA Technical Reports Server (NTRS)

Howe, J. T.; Gibson, D. B.; Evans, T. O.; Breaker, L.; Wrigley, R. C.; Broenkow, W. W.

1981-01-01

An upwelling episode in the Point Sal region of the central California coast is examined by using data obtained by a data buoy. The episodes was interrupted by the abrupt abatement of the strong wind which promotes coastal upwelling. The mean hourly upwelling index is calculated to be higher than the 20 year mean monthly value. During 3 days of light wind commercial bottom trawl operations were possible. Shipboard estimates of chlorophyll content in surface waters during trawling show the high concentrations that are indicative of a rich biomass of phytoplankton, a result of the upwelling episode. Satellite imagery shows the extent of the upwelling water to be of the order of 100 km offshore; the result of many upwelling episodes. Shipboard echo sounder data show the presence of various delmersal species and of zooplakton; the latter graze on the phytoplankton in the upper euphotic layers. The fish catch data are recorded according to species for 2 days of trawling, and the catch per trawl hour is recorded.

Recent 121-year variability of western boundary upwelling in the northern South China Sea

NASA Astrophysics Data System (ADS)

Liu, Yi; Peng, Zicheng; Shen, Chuan-Chou; Zhou, Renjun; Song, Shaohua; Shi, Zhengguo; Chen, Tegu; Wei, Gangjian; Delong, Kristine L.

2013-06-01

upwelling is typically related to the eastern boundary upwelling system, whereas the powerful southwest Asian summer monsoon can also generate significant cold, nutrient-rich deep water in western coastal zones. Here we present a sea surface temperature record (A.D. 1876-1996) derived from coral Porites Sr/Ca for an upwelling zone in the northern South China Sea. The upwelling-induced sea surface temperature anomaly record reveals prominent multidecadal variability driven by Asian summer monsoon dynamics with an abrupt transition from warmer to colder conditions in 1930, and a return to warmer conditions after 1960. Previous studies suggest the expected increase in atmospheric CO2 for the coming decades may result in intensification in the eastern boundary upwelling system, which could enhance upwelling of CO2-rich deep water thus exacerbating the impact of acidification in these productive zones. In contrast, the weakening trend since 1961 in the upwelling time series from the northern South China Sea suggests moderate regional ocean acidification from upwelling thus a stress relief for marine life in this region.

Intensification and spatial homogenization of coastal upwelling under climate change.

PubMed

Wang, Daiwei; Gouhier, Tarik C; Menge, Bruce A; Ganguly, Auroop R

2015-02-19

The timing and strength of wind-driven coastal upwelling along the eastern margins of major ocean basins regulate the productivity of critical fisheries and marine ecosystems by bringing deep and nutrient-rich waters to the sunlit surface, where photosynthesis can occur. How coastal upwelling regimes might change in a warming climate is therefore a question of vital importance. Although enhanced land-ocean differential heating due to greenhouse warming has been proposed to intensify coastal upwelling by strengthening alongshore winds, analyses of observations and previous climate models have provided little consensus on historical and projected trends in coastal upwelling. Here we show that there are strong and consistent changes in the timing, intensity and spatial heterogeneity of coastal upwelling in response to future warming in most Eastern Boundary Upwelling Systems (EBUSs). An ensemble of climate models shows that by the end of the twenty-first century the upwelling season will start earlier, end later and become more intense at high but not low latitudes. This projected increase in upwelling intensity and duration at high latitudes will result in a substantial reduction of the existing latitudinal variation in coastal upwelling. These patterns are consistent across three of the four EBUSs (Canary, Benguela and Humboldt, but not California). The lack of upwelling intensification and greater uncertainty associated with the California EBUS may reflect regional controls associated with the atmospheric response to climate change. Given the strong linkages between upwelling and marine ecosystems, the projected changes in the intensity, timing and spatial structure of coastal upwelling may influence the geographical distribution of marine biodiversity.

Has upwelling strengthened along worldwide coasts over 1982-2010?

NASA Astrophysics Data System (ADS)

Varela, R.; Álvarez, I.; Santos, F.; Decastro, M.; Gómez-Gesteira, M.

2015-05-01

Changes in coastal upwelling strength have been widely studied since 1990 when Bakun proposed that global warming can induce the intensification of upwelling in coastal areas. Whether present wind trends support this hypothesis remains controversial, as results of previous studies seem to depend on the study area, the length of the time series, the season, and even the database used. In this study, temporal and spatial trends in the coastal upwelling regime worldwide were investigated during upwelling seasons from 1982 to 2010 using a single wind database (Climate Forecast System Reanalysis) with high spatial resolution (0.3°). Of the major upwelling systems, increasing trends were only observed in the coastal areas of Benguela, Peru, Canary, and northern California. A tendency for an increase in upwelling-favourable winds was also identified along several less studied regions, such as the western Australian and southern Caribbean coasts.

Has upwelling strengthened along worldwide coasts over 1982-2010?

PubMed Central

Varela, R.; Álvarez, I.; Santos, F.;  deCastro, M.; Gómez-Gesteira, M.

2015-01-01

Changes in coastal upwelling strength have been widely studied since 1990 when Bakun proposed that global warming can induce the intensification of upwelling in coastal areas. Whether present wind trends support this hypothesis remains controversial, as results of previous studies seem to depend on the study area, the length of the time series, the season, and even the database used. In this study, temporal and spatial trends in the coastal upwelling regime worldwide were investigated during upwelling seasons from 1982 to 2010 using a single wind database (Climate Forecast System Reanalysis) with high spatial resolution (0.3°). Of the major upwelling systems, increasing trends were only observed in the coastal areas of Benguela, Peru, Canary, and northern California. A tendency for an increase in upwelling-favourable winds was also identified along several less studied regions, such as the western Australian and southern Caribbean coasts. PMID:25952477

A Holocene record of ocean productivity and upwelling from the northern California continental slope

NASA Astrophysics Data System (ADS)

Addison, J. A.; Barron, J. A.; Finney, B.; Kusler, J. E.; Bukry, D.; Heusser, L. E.; Alexander, C. R., Jr.

2016-12-01

The Holocene upwelling history of the northern California continental slope is examined using a 7-m-long marine sediment core (TN062-O550; 40.9°N, 124.6°W, 550 m water depth) collected offshore from Eureka, CA, that spans the last 7,400 calibrated years before present (cal yrs BP). A combination of biogenic sediment concentrations (opal, total organic C, and total N), stable isotopes (organic matter δ13C and bulk sedimentary δ15N), and key microfossil indicators of upwelling were used to test the hypothesis that marine productivity in the California Current System (CCS) driven by coastal upwelling has co-varied with global Holocene millennial-scale warm intervals. Results show biogenic sediment accumulation in TN062-O550 varied considerably during the Holocene, despite being located within 50 km of the mouth of the Eel River, one of the largest sources of terrigenous sediment to the Northeast Pacific Ocean margin. A key time interval beginning at 2900 cal yr BP indicates the onset of modern upwelling in the CCS, and that this period also corresponds to the most intense period of upwelling in the last 7,400 years. When these results are placed into a regional CCS context during the Holocene, it was found that the timing of upwelling intensification as recorded in TN062-O550 corresponds closely to that seen at nearby ODP Site 1019 as well as in the Santa Barbara Basin of southern California. Other CCS records with less high-quality age control show similar results, which suggest late Holocene upwelling intensification may be synchronous throughout the CCS. Based on the strong correspondence between the alkenone-derived sea surface temperature record at ODP Site 1019 and the onset of late Holocene upwelling in northern California, we tentatively suggest that regional CCS warming may be conducive to upwelling intensification in the future.

Biogeochemical cycling in the ocean. Part 1: Introduction to the effects of upwelling along the west coast of North America

NASA Technical Reports Server (NTRS)

Howe, John T.

1986-01-01

Coastal upwelling is examined as it relates to the cycling of chemical species in coastal waters along the west coast of North America. The temporal and spatial features of upwelling phenomena in the Eastern boundary regions of the North Pacific Ocean are presented and discussed in terms of upwelling episodes. Climate conditions affecting upwelling include: thermal effects, wind-induced shear stress which moves surface layers, and the curl of the wind stress vector which is thought to affect the extent and nature of upwelling and the formation of offshore convergent downwelling fronts. These effects and the interaction of sunlight and upwelled nutrients which result in a biological bloom in surface waters is modeled analytically. The roles of biological and chemical species, including the effects of predation, are discussed in that context, and relevant remote sensing and in situ observations are presented. Climatological, oceanographic, biological, physical, chemical events, and processes that pertain to biogeochemical cycling are presented and described by a set of partial differential equations. Simple preliminary results are obtained and are compared with data. Thus a fairly general framework has been laid where the many facets of biogeochemical cycling in coastal upwelled waters can be examined in their relationship to one another, and to the whole, to whatever level of detail or approximation is warranted or desired.

Far-reaching transport of Pearl River plume water by upwelling jet in the northeastern South China Sea

NASA Astrophysics Data System (ADS)

Chen, Zhaoyun; Pan, Jiayi; Jiang, Yuwu; Lin, Hui

2017-09-01

Satellite images from the Moderate Resolution Imaging Spectroradiometer (MODIS) show that there was a belt of turbid water appearing along an upwelling front near the Chinese coast of Guangdong, and indicate that the turbid water of the Pearl River plume water could be transported to a far-reaching area east of the Taiwan Bank. Numerical modeling results are consistent with the satellite observations, and reveal that a strong jet exists at the upwelling front with a speed as high as 0.8 m s- 1, which acts as a pathway for transporting the high-turbidity plume water. The dynamical analysis suggests that geostrophic equilibrium dominates in the upwelling front and plume areas, and the baroclinicity of the upwelling front resulting from the horizontal density gradient is responsible for the generation of the strong jet, which enhances the far-reaching transport of the terrigenous nutrient-rich water of the Pearl River plume. Model sensitivity analyses also confirm that this jet persists as long as the upwelling front exists, even when the wind subsides and becomes insignificant. Further idealized numerical model experiments indicate that the formation and persistence of the upwelling front jet depend on the forcing strength of the upwelling-favorable wind. The formation time of the jet varies from 15 to 158 h as the stress of the upwelling-favorable wind changes from 0.2 to 0.01 N m- 2. With the persistent transport of the nutrient-rich plume water, biophysical activities can be promoted significantly in the far-reaching destination area of the oligotrophic water.

Iberian and California-Oregon Upwelling Systems: trends and status of two upwelling systems at the same latitude over the last four decades.

NASA Astrophysics Data System (ADS)

Barreiro, B.; Barton, E. D.

2012-04-01

The study of Eastern Boundary Upwelling Systems is of vital importance, given the interest in rational management of the fisheries resources. The high level of biogeochemical activity associated with the physical process of upwelling increases primary production and enriches the living resources of these areas. This presentation focuses on the variability of these physical processes on daily to interdecadal scales, in an investigation of the effects of climate change in the Iberian and California-Oregon Upwelling Systems. The Upwelling Index (UI) was analysed for the period 1967-2010 at 35.5-44.5°N in both areas. The two systems differ in that the magnitudes of upwelling intensity off California-Oregon are 3.3 higher than off Iberia but they show a similar latitudinal behaviour. The annual/interannual scale variability of upwelling can be represented by the recently introduced Cumulative Upwelling Index (CUI) based on summing the mean daily UI. The seasonal cycle results show the length of upwelling season increases southwards from 180 to 300 days and a net upwelling occurs only for latitudes lower than 43°N. On the interannual scales, the CUI showed a roughly linear change at high and low latitudes (R>0.9), with slopes between 250 and -130 m3 s-1 km-1 day-1 in Iberian and 620 and -290 m3 s-1 km-1 day-1 in California-Oregon. The central areas (40.5-42.5°N) are less stable and shifted between net upwelling and downwelling over extended periods. This information helps us contextualize the present state of the study area and interpreted ongoing intensive process-oriented studies within the longer term variability.

Development of upwelling on pathway and freshwater transport of Pearl River plume in northeastern South China Sea

NASA Astrophysics Data System (ADS)

Chen, Zhaoyun; Jiang, Yuwu; Liu, James T.; Gong, Wenping

2017-08-01

In situ observations, satellite images, and numerical modeling results have shown that the Pearl River plume axis extends alongshore and passes through two separate upwelling regions—one off the Guangdong and Fujian coasts (the Yuedong upwelling) and the other in the Taiwan Bank during the initial and medium stages of the Yuedong upwelling, while it is directed offshore when the Yuedong upwelling is strong. Model experiments are conducted to examine the effects of wind strength and baroclinicity on the upwelling and the corresponding pathway and freshwater transport of the Pearl River plume. The baroclinic effect is important to intensifying the horizontal velocity at the upwelling front and freshwater transport in the northeastern South China Sea. The freshwater transport flux is further decomposed into advection, vertical shear, and tidal pumping components, and advection is the dominant contributor. As the Yuedong upwelling develops, the zone with a relatively high-pressure gradient moves offshore due to offshore Ekman transport and the shift in the upwelling front, which is responsible for the offshore transport of the river plume. When the river plume is transported to the outer-shelf, sometimes it can be further entrained into eddies, allowing its export to the open sea.

Seasonality of coastal upwelling trends under future warming scenarios along the southern limit of the canary upwelling system

NASA Astrophysics Data System (ADS)

Sousa, Magda Catarina; Alvarez, Ines; deCastro, Maite; Gomez-Gesteira, Moncho; Dias, João Miguel

2017-04-01

The Canary Upwelling Ecosystem (CUE) is one of the four most important upwelling sites around the world in terms of primary production, with coastal upwelling mostly a year-round phenomenon south of 30°N. Based on annual future projections, several previous studies indicated that global warming will intensify coastal upwelling in the northern region and will induce its weakening at the southernmost latitudes. However, analysis of historical data, showed that coastal upwelling depends on the length of the time series, the season, and even the database used. Thus, despite previous efforts, an overall detailed description of seasonal upwelling trends and their effects on sea surface temperature (SST) along the Canary coast over the 21st century remains unclear. To address this issue, several regional and global wind and SST climate models from CORDEX and CMIP5 projects for the period 1976-2099 were analyzed. This research provides new insights about coastal upwelling trends under future warming scenarios for the CUE, with results showing opposite patterns for upwelling index (UI) trends depending on the season. A weakening of the UI occurs from May to August all along the coast, whereas it increases from October to April. Analysis of SST trends reveals a general warming throughout the area, although the warming rate is considerably lower near the shore than at open ocean locations due to coastal upwelling effects. In addition, SST projections show higher warming rates from May to August than from October to April in response to the future decreasing trend in the UI during the summer months.

Physical structure and algae community of summer upwelling off eastern Hainan

NASA Astrophysics Data System (ADS)

Xu, H.; Liu, S.; Xie, Q.; Hong, B.; Long, T.

2017-12-01

The upwelling system is the most productive ecosystem along the continental shelf of the northern South China Sea Shelf. It brings nutrient from bottom to surface and blooms biotic community driven by summer monsoon. In this study, we present observed results of physical and biotic community structures during August, 2015 in the upwelling system along Hainan eastern coast, which is one the strongest upwelling systems in the northern South China Sea. By using hydrological data collected by CTD, we found a significant cold water tongue with high salinity which extended from offshore to 100 m isobaths. However, dissolved oxygen (DO) showed a sandwich structure in which high core of DO concentration appeared at the layer from 5 m to 30 m. It possibly was caused by the advection transport of high DO from adjacent area. Basically, this upwelling system was constrained at northern area of 18.8ºN in horizontal due to the weakening summer monsoon in August. In addition, we collected water sample at the upwelling area and measured algae categories and concentration by high performance liquid chromatography (HPLC). Results show the biotic community was dominated by five types of algae mainly, they were diatoms, dinoflagellates, green algae, prokaryotes and prochlorococcus. And different patterns of different algae were demonstrated. In the upwelling area, diatoms and prokaryotes show opposite structures, and more complex pattern for the rest three algae indicating an active biotic community in the upwelling system.

Reconstructing Holocene Upwelling Conditions in Monterey Bay, California

NASA Astrophysics Data System (ADS)

Owen, P. W.; Wagner, A. J.; Addison, J. A.; Schwartz, V.; Barron, J. A.; Carlin, J. A.

2017-12-01

Upwelling along the eastern margin of the North Pacific is vital to the California Current System (CCS) and is a major contributing factor to the diverse marine ecosystems along the US West Coast. Prior studies hypothesize climate change will accelerate the alongshore equatorward winds that drive coastal upwelling, with the greatest increase in upwelling occurring within the poleward portion (N of 40°N) of the CCS. However, other studies have suggested that future upwelling changes in the southern portion (S of 35°N) of the CCS are less certain. Here we present a geological perspective into past Holocene upwelling along the central California coast from the Monterey Bay National Marine Sanctuary to provide a potential analogue for future upwelling conditions and a deeper understanding of CCS dynamics. A smear slide analysis of marine sediment cores taken from [1] the Pioneer Seamount off the Central California coast, [2] offshore of Pt. Año Nuevo, and [3] near the mouth of the Salinas River shows varying percentages of biogenic and terrigenous sediments during the past 11,000 years, with a shift toward greater biogenic silica sediments occurring approximately 3,000 cal yrs BP in the offshore site. In addition, an analysis of the diatom assemblages is used as a proxy for upwelling conditions. Preliminary results suggest a greater abundance of F. doliolus, a diatom species commonly used as a proxy for increased productivity and upwelling, occurs around 3,500 cal years BP. These results are then compared to existing calibrated X-ray computed tomography (CT) bulk density, total organic carbon (TOC), and biogenic silica (opal) measurements during periods of known climatic variability such as the Holocene Climate Optimum, Medieval Warm Period and Little Ice Age. Our results can provide a new high-resolution study of the central CCS throughout the Holocene, and give us a better understanding as to how future oceanic conditions may change the marine ecosystems along California's coast.

A Holocene record of ocean productivity and upwelling from the northern California continental slope

USGS Publications Warehouse

Addison, Jason A.; Barron, John A.; Finney, Bruce P.; Kusler, Jennifer E.; Bukry, David; Heusser, Linda E.; Alexander, Clark R.

2018-01-01

The Holocene upwelling history of the northern California continental slope is examined using the high-resolution record of TN062-O550 (40.9°N, 124.6°W, 550 m water depth). This 7-m-long marine sediment core spans the last ∼7500 years, and we use it to test the hypothesis that marine productivity in the California Current System (CCS) driven by coastal upwelling has co-varied with Holocene millennial-scale warm intervals. A combination of biogenic sediment concentrations (opal, total organic C, and total N), stable isotopes (organic matter δ13C and bulk sedimentary δ15N), and key microfossil indicators of upwelling were used to test this hypothesis. The record of biogenic accumulation in TN062-O550 shows considerable Holocene variability despite being located within 50 km of the mouth of the Eel River, which is one of the largest sources of terrigenous sediment to the Northeast Pacific Ocean margin. A key time interval beginning at ∼2900 calibrated years before present (cal yr BP) indicates the onset of modern upwelling in the CCS, and this period also corresponds to the most intense period of upwelling in the last 7500 years. When these results are placed into a regional CCS context during the Holocene, it was found that the timing of upwelling intensification at TN062-O550 corresponds closely to that seen at nearby ODP Site 1019, as well as in the Santa Barbara Basin of southern California. Other CCS records with less refined age control show similar results, which suggest late Holocene upwelling intensification may be synchronous throughout the CCS. Based on the strong correspondence between the alkenone sea surface temperature record at ODP Site 1019 and the onset of late Holocene upwelling in northern California, we suggest that CCS warming may be conducive to upwelling intensification, though future changes are unclear as the mechanisms forcing SST variability may differ.

Nutrient supply, surface currents, and plankton dynamics predict zooplankton hotspots in coastal upwelling systems

NASA Astrophysics Data System (ADS)

Messié, Monique; Chavez, Francisco P.

2017-09-01

A simple combination of wind-driven nutrient upwelling, surface currents, and plankton growth/grazing equations generates zooplankton patchiness and hotspots in coastal upwelling regions. Starting with an initial input of nitrate from coastal upwelling, growth and grazing equations evolve phytoplankton and zooplankton over time and space following surface currents. The model simulates the transition from coastal (large phytoplankton, e.g., diatoms) to offshore (picophytoplankton and microzooplankton) communities, and in between generates a large zooplankton maximum. The method was applied to four major upwelling systems (California, Peru, Northwest Africa, and Benguela) using latitudinal estimates of wind-driven nitrate supply and satellite-based surface currents. The resulting zooplankton simulations are patchy in nature; areas of high concentrations coincide with previously documented copepod and krill hotspots. The exercise highlights the importance of the upwelling process and surface currents in shaping plankton communities.

A study on the seasonal variability of upwelling and its effects on physical parameters in Arabian Sea

NASA Astrophysics Data System (ADS)

Shukla, Rohit Kumar; Shaji, Chithra; Ojha, Satya P.; Kumar, Pankaj

2017-04-01

The upwelling in Arabian Sea is an important phenomenon, mainly occurring along the southwest coast of India during summer monsoon, which increases the biological productivity in the region. The south west coast of Arabian sea region accounts for about 53% of fish yield of the total fish production in Arabian Sea, thus it is imperative to study and understand the process of upwelling in this region. To study the upwelling features in southwest coast of India, monthly Ekman mass transport is estimated using analyzed wind and derived products from Oceansat-II scatterometer data. Seasonal variability of Ekman mass transport has been analyzed to study the occurrences of coastal upwelling in this region. Results show prominent region of upwelling along southwest coast of India is between 7° and 15° N. Transport estimate demonstrate that the strong offshore Ekman mass transport, as high as -2000 kg/m/s, was observed during summer monsoon months due to favorable wind conditions. Very weak offshore transport, as low as -200 kg/m/s, was observed during pre-monsoon months as winds were weak and spatially variable. Moderate offshore transport, up to -750 kg/m/s, was observed during winter monsoon months. The upwelling associated ocean surface features such as Sea-surface temperature (SST, from AVHRR), chlorophyll concentration (AQUA-MODIS), wind stress curl derived from Oceansat-II and sea surface salinity (SSS, from Aquarius) were examined to demonstrate the spatial and temporal evolution of upwelling in this region. With the advancement of the summer monsoon and upwelling, the monthly mean SST range reaches up to 26-27°C (August - September) from about 29-30°C (April - May). The monthly mean Chlorophyll concentration reaches up to 25-30 mg/m3 (August-September) from 0.1-0.2 mg/m3 (January-February). The monthly SSS which was observed to be about 34 psu (December 2102- January 2013) reaches to 36.5 psu (August-September). Analysis of SST from different sources suggests that the occurrence of a mini-cold pool (MCP) off the southern tip of India (STI) is a persistent phenomenon which occurs during both the summer and the winter monsoon seasons. The dynamics which governs the occurrence of MCP during the summer monsoon season is mainly due to upwelling, advection of the cold upwelled water from the western Arabian Sea and the southwest coast of India. Since, Somalia upwelling is an established fact, hence, we estimate upwelling only on southwest coast of India to understand the genesis of MCP. Results show that the genesis of MCP off STI starts by June and peaks in August and the SST attains a value as low as 26.0 °C, essentially due to upwelling and advection of upwelled water from the Somalia region along with upwelled water from southwest coast of India.

Dehumidification of Iberia by enhanced summer upwelling

NASA Astrophysics Data System (ADS)

Miranda, P. M.; Costa, V.; Nogueira, M.; Semedo, A.

2015-12-01

Dehumidification of Iberia by enhanced summer upwelling Miranda PMA, Costa V, Semedo AIDL, Faculdade de Ciências, University of LisbonA 24-year simulation of the recent Iberian climate, using the WRF model at 9km resolution forced by ERA-Interim reanalysis (1989-2012), is analysed for the decadal evolution of the upwelling forcing coastal wind and for column integrated Precipitable water vapour (PWV). Results indicate that, unlike what was found by Bakun et al. (2009) for the Peruvian region, a statistically significant trend in the upwelling favourable (northerly) wind has been accompanied by a corresponding decrease in PWV, not only inland but also over the coastal waters. Such increase is consistent with a reinforced northerly coastal jet in the maritime boundary layer contributing to atmospheric Ekman pumping of dry continental air into the coastal region. Diagnostics of the prevalence of the Iberian thermal low following Hoinka and Castro (2003) also show a positive trend in its frequency during an extended summer period (April to September). These results are consistent with recent studies indicating an upward trend in the frequency of upwelling in SW Iberia (Alves and Miranda 2013), and may be relevant for climate change applications as an increase in coastal upwelling (Miranda et al 2013) may lead to substantial regional impacts in the subtropics. Aknowledgements: Study supported by FCT Grant RECI/GEO-MET/0380/2012Alves JMR, Miranda PMA (2013) Variability of Iberian upwelling implied by ERA-40 and ERA-Interim reanalyses, Tellus A 2013, http://dx.doi.org/10.3402/tellusa.v65i0.19245.Bakun et al (2010) Greenhouse gas, upwelling-favorable winds, and the future of coastal ocean upwelling ecosystems, Global Change Biology, doi: 10.1111/j.1365-2486.2009.02094.xHoinka KP, Castro M (2003) The Iberian Peninsula thermal low. QJRMS, 129, 1491- 1511, doi: 10.1256/qj.01.189.Miranda et al (2013) Climate change and upwelling: response of Iberian upwelling to atmospheric forcing in a regional climate scenario. Climate Dynamics, doi: 10.1007/s00382-012-1442-9.

Dynamics of upwelling annual cycle in the equatorial Atlantic Ocean

NASA Astrophysics Data System (ADS)

Wang, Li-Chiao; Jin, Fei-Fei; Wu, Chau-Ron; Hsu, Huang-Hsiung

2017-04-01

The annual upwelling is an important component of the equatorial Atlantic annual cycle. A simple theory is proposed using the framework of Zebiak-Cane (ZC) ocean model for insights into the dynamics of the upwelling annual cycle. It is demonstrated that in the Atlantic equatorial region this upwelling is dominated by Ekman processing in the west, whereas in the east it is primarily owing to shoaling and deepening of the thermocline resulting from equatorial mass meridional recharge/discharge and zonal redistribution processes associated with wind-driven equatorial ocean waves. This wind-driven wave upwelling plays an important role in the development of the annual cycle in the sea surface temperature of the cold tongue in the eastern equatorial Atlantic.

The future of coastal upwelling in the Humboldt current from model projections

NASA Astrophysics Data System (ADS)

Oyarzún, Damián; Brierley, Chris M.

2018-03-01

The Humboldt coastal upwelling system in the eastern South Pacific ocean is one of the most productive marine ecosystems in the world. A weakening of the upwelling activity could lead to severe ecological impacts. As coastal upwelling in eastern boundary systems is mainly driven by wind stress, most studies so far have analysed wind patterns change through the 20th and 21st Centuries in order to understand and project the phenomenon under specific forcing scenarios. Mixed results have been reported, and analyses from General Circulation Models have suggested even contradictory trends of wind stress for the Humboldt system. In this study, we analyse the ocean upwelling directly in 13 models contributing to phase 5 of the Coupled Model Intercomparison Project (CMIP5) in both the historical simulations and an extreme climate change scenario (RCP8.5). The upwelling is represented by the upward ocean mass flux, a newly-included variable that represents the vertical water transport. Additionally, wind stress, ocean stratification, Ekman layer depth and thermocline depth were also analysed to explore their interactions with coastal upwelling throughout the period studied. The seasonal cycle of coastal upwelling differs between the Northern and Southern Humboldt areas. At lower latitudes, the upwelling season spans most of the autumn, winter and spring. However, in the Southern Humboldt area the upwelling season takes place in spring and the summertime with downwelling activity in winter. This persists throughout the Historical and RCP8.5 simulations. For both the Northern and Southern Humboldt areas an increasing wind stress is projected. However, different trends of upwelling intensity are observed away from the sea surface. Whereas wind stress will continue controlling the decadal variability of coastal upwelling on the whole ocean column analysed (surface to 300 m depth), an increasing disconnect with upwelling intensity is projected below 100 m depth throughout the 21st Century. This relates to an intensification of ocean stratification under global warming as shown by the sea water temperature profiles. Additionally, a divergence between the Ekman layer and thermocline depths is also evidenced. Given the interaction of upwelled nutrients and microscopic organisms essential for fish growth, a potential decline of coastal upwelling at depth could lead to unknown ecological and socio-economical effects.

Ocean response to typhoons in the western North Pacific: Composite results from Argo data

NASA Astrophysics Data System (ADS)

Lin, Sheng; Zhang, Wen-Zhou; Shang, Shao-Ping; Hong, Hua-Sheng

2017-05-01

Composite structures of ocean temperature and salinity anomalies caused by tropical cyclones (TCs) or typhoons in the western North Pacific Ocean were obtained from Argo data. These structures were used to analyze ocean responses to typhoons and the dynamic mechanisms inherent in those responses with a particular focus on upwelling. TC-induced cooling is often strongly rightward-biased in the surface layer, and shifts toward the typhoon track at depths exceeding roughly 100 m. In the central water column within approximately 75 km of the typhoon track, subsurface warming predicted by vertical mixing is restrained and replaced by cooling due to upwelling. Upwelling contributes 15% on average to temperature cooling in the near surface layer (10-30 m), 84% in the subsurface layer (30-250 m) and 94% in the deep layer (250-600 m) during the period of 0.5-2.5 days after the typhoon's passage. It is suggested that the sea surface cooling effect of vertical mixing can be enhanced by the upwelling. The effect of upwelling is also prominent in the salinity response to typhoons. The composite results from the Argo data clearly reveal basic ocean responses to typhoons and indicate the important role of upwelling therein.

Dynamics of plankton populations in upwelling areas

NASA Technical Reports Server (NTRS)

Szekielda, K. H. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Spectral properties of the upwelled waters off the NW coast of Africa were studied with observations derived from aircraft and Skylab. Results indicate that the two-channel, ratio approach is ineffective in determining surface chlorophyll concentrations. Ocean color boundaries and temperature gradients were found to be directly correlated with each other and also with fishing effort in the upwelling region. Photographic and scanner data derived from Skylab were effective in locating ocean boundaries and mapping temperature distributions.

Observed impact of upwelling events on water properties and biological activity off the southwest coast of New Caledonia.

PubMed

Ganachaud, Alexandre; Vega, Andrés; Rodier, Martine; Dupouy, Cécile; Maes, Christophe; Marchesiello, Patrick; Eldin, Gerard; Ridgway, Ken; Le Borgne, Robert

2010-01-01

The upwelling events that follow strong trade wind episodes have been described in terms of their remarkable signature in the sea surface temperature southwest off New Caledonia. Upwelling brings deeper, and colder waters to the surface, causing 2-4 degrees C drops in temperature in a few hours, followed by a slower relaxation over several days. Upwelling may sporadically bring nutrients to the surface under certain conditions, and increase the biological productivity. Two multidisciplinary hydrographic cruises allow the impact of upwelling on the chemical and biological properties of the water to be documented. Both cruises took place in austral summer (December 2004 and December 2005), but the first cruise occurred during a strong upwelling event, while the second cruise occurred in calm conditions. The water properties and planktonic composition show important contrasts, with a strong southeastward current (the "ALIS current of New Caledonia") competing with the upwelling system. Our analysis suggests that, while observed productivities are far less than those of typical upwelling systems, some wind events in New Caledonia may contribute to biological activity. A currentmeter mooring, deployed during the second cruise, documents the ocean response to a changing wind field and the local impact of upwelling on currents and temperatures on the water column. The results are discussed, with the help of climatology, Argo float profiler data, satellite data and of a high-resolution numerical simulation. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Coastal Upwelling Drives Intertidal Assemblage Structure and Trophic Ecology.

PubMed

Reddin, Carl J; Docmac, Felipe; O'Connor, Nessa E; Bothwell, John H; Harrod, Chris

2015-01-01

Similar environmental driving forces can produce similarity among geographically distant ecosystems. Coastal oceanic upwelling, for example, has been associated with elevated biomass and abundance patterns of certain functional groups, e.g., corticated macroalgae. In the upwelling system of Northern Chile, we examined measures of intertidal macrobenthic composition, structure and trophic ecology across eighteen shores varying in their proximity to two coastal upwelling centres, in a hierarchical sampling design (spatial scales of >1 and >10 km). The influence of coastal upwelling on intertidal communities was confirmed by the stable isotope values (δ13C and δ15N) of consumers, including a dominant suspension feeder, grazers, and their putative resources of POM, epilithic biofilm, and macroalgae. We highlight the utility of muscle δ15N from the suspension feeding mussel, Perumytilus purpuratus, as a proxy for upwelling, supported by satellite data and previous studies. Where possible, we used corrections for broader-scale trends, spatial autocorrelation, ontogenetic dietary shifts and spatial baseline isotopic variation prior to analysis. Our results showed macroalgal assemblage composition, and benthic consumer assemblage structure, varied significantly with the intertidal influence of coastal upwelling, especially contrasting bays and coastal headlands. Coastal topography also separated differences in consumer resource use. This suggested that coastal upwelling, itself driven by coastline topography, influences intertidal communities by advecting nearshore phytoplankton populations offshore and cooling coastal water temperatures. We recommend the isotopic values of benthic organisms, specifically long-lived suspension feeders, as in situ alternatives to offshore measurements of upwelling influence.

Coastal Upwelling Drives Intertidal Assemblage Structure and Trophic Ecology

PubMed Central

Reddin, Carl J.; Docmac, Felipe; O’Connor, Nessa E.; Bothwell, John H.; Harrod, Chris

2015-01-01

Similar environmental driving forces can produce similarity among geographically distant ecosystems. Coastal oceanic upwelling, for example, has been associated with elevated biomass and abundance patterns of certain functional groups, e.g., corticated macroalgae. In the upwelling system of Northern Chile, we examined measures of intertidal macrobenthic composition, structure and trophic ecology across eighteen shores varying in their proximity to two coastal upwelling centres, in a hierarchical sampling design (spatial scales of >1 and >10 km). The influence of coastal upwelling on intertidal communities was confirmed by the stable isotope values (δ13C and δ15N) of consumers, including a dominant suspension feeder, grazers, and their putative resources of POM, epilithic biofilm, and macroalgae. We highlight the utility of muscle δ15N from the suspension feeding mussel, Perumytilus purpuratus, as a proxy for upwelling, supported by satellite data and previous studies. Where possible, we used corrections for broader-scale trends, spatial autocorrelation, ontogenetic dietary shifts and spatial baseline isotopic variation prior to analysis. Our results showed macroalgal assemblage composition, and benthic consumer assemblage structure, varied significantly with the intertidal influence of coastal upwelling, especially contrasting bays and coastal headlands. Coastal topography also separated differences in consumer resource use. This suggested that coastal upwelling, itself driven by coastline topography, influences intertidal communities by advecting nearshore phytoplankton populations offshore and cooling coastal water temperatures. We recommend the isotopic values of benthic organisms, specifically long-lived suspension feeders, as in situ alternatives to offshore measurements of upwelling influence. PMID:26214806

Practical limitations on the use of diurnal temperature signals to quantify groundwater upwelling

USGS Publications Warehouse

Briggs, Martin A.; Lautz, Laura K.; Buckley, Sean F.; Lane, John W.

2014-01-01

Groundwater upwelling to streams creates unique habitat by influencing stream water quality and temperature; upwelling zones also serve as vectors for contamination when groundwater is degraded. Temperature time series data acquired along vertical profiles in the streambed have been applied to simple analytical models to determine rates of vertical fluid flux. These models are based on the downward propagation characteristics (amplitude attenuation and phase-lag) of the surface diurnal signal. Despite the popularity of these models, there are few published characterizations of moderate-to-strong upwelling. We attribute this limitation to the thermodynamics of upwelling, under which the downward conductive signal transport from the streambed interface occurs opposite the upward advective fluid flux. Governing equations describing the advection–diffusion of heat within the streambed predict that under upwelling conditions, signal amplitude attenuation will increase, but, counterintuitively, phase-lag will decrease. Therefore the extinction (measurable) depth of the diurnal signal is very shallow, but phase lag is also short, yielding low signal to noise ratio and poor model sensitivity. Conversely, amplitude attenuation over similar sensor spacing is strong, yielding greater potential model sensitivity. Here we present streambed thermal time series over a range of moderate to strong upwelling sites in the Quashnet River, Cape Cod, Massachusetts. The predicted inverse relationship between phase-lag and rate of upwelling was observed in the field data over a range of conditions, but the observed phase-lags were consistently shorter than predicted. Analytical solutions for fluid flux based on signal amplitude attenuation return results consistent with numerical models and physical seepage meters, but the phase-lag analytical model results are generally unreasonable. Through numerical modeling we explore reasons why phase-lag may have been over-predicted by the analytical models, and develop guiding relations of diurnal temperature signal extinction depth based on stream diurnal signal amplitude, upwelling magnitude, and streambed thermal properties that will be useful in designing future experiments.

Evaluation of the sinks and sources of atmospheric CO2 by artificial upwelling.

PubMed

Pan, Yiwen; Fan, Wei; Huang, Ting-Hsuan; Wang, Shu-Lun; Chen, Chen-Tung Arthur

2015-04-01

Artificial upwelling is considered a promising way to reduce the accumulation of anthropogenic carbon dioxide in the atmosphere. This practice could transport nutrient-rich deep water to the euphotic zone, enhance phytoplankton growth and consequently increase organic carbon exportation to the deep ocean via the biological pump. However, only a few studies quantitatively assess changes in oceanic CO2 uptake resulting from artificial upwelling. This article uses a simulation to examine the effect of hypothetical artificial upwelling-induced variations of CO2 fugacity in seawater (fCO2) using observed carbon and nutrient data from 14 stations, ranging from 21 to 43°N, in the West Philippine Sea (WPS), the East China Sea (ECS) and the Sea of Japan. Calculations are based on two basic assumptions: First, a near-field mixing of a nutrient-rich deep-ocean water plume in a stratified ocean environment is assumed to form given the presence of an artificial upwelling devise with appropriate technical parameters. Second, it is assumed that photosynthesis of marine phytoplankton could deplete all available nutrients following the stoichiometry of the modified Redfield ratio C/H/O/N/S/P=103.1/181.7/93.4/11.7/2.1/1. Results suggest artificial upwelling has significant effects on regional changes in sea-air differences (ΔfCO2sea-air) and the carbon sequestration potential (ΔfCO2mixed-amb). Large variations of ΔfCO2sea-air and ΔfCO2mixed-amb are shown to be associated with different regions, seasons and technical parameters of the artificial upwelling device. With proper design, it is possible to reverse the contribution of artificial upwelling from a strong CO2 source to sink. Thus, artificial upwelling has the potential to succeed as a geoengineering technique to sequester anthropogenic CO2, with appropriate technical parameters in the right region and season. Copyright © 2014 Elsevier B.V. All rights reserved.

Natural ocean acidification at Papagayo upwelling system (north Pacific Costa Rica): implications for reef development

NASA Astrophysics Data System (ADS)

Sánchez-Noguera, Celeste; Stuhldreier, Ines; Cortés, Jorge; Jiménez, Carlos; Morales, Álvaro; Wild, Christian; Rixen, Tim

2018-04-01

Numerous experiments have shown that ocean acidification impedes coral calcification, but knowledge about in situ reef ecosystem response to ocean acidification is still scarce. Bahía Culebra, situated at the northern Pacific coast of Costa Rica, is a location naturally exposed to acidic conditions due to the Papagayo seasonal upwelling. We measured pH and pCO2 in situ during two non-upwelling seasons (June 2012, May-June 2013), with a high temporal resolution of every 15 and 30 min, respectively, using two Submersible Autonomous Moored Instruments (SAMI-pH, SAMI-CO2). These results were compared with published data from the 2009 upwelling season. Findings revealed that the carbonate system in Bahía Culebra shows a high temporal variability. Incoming offshore waters drive intra- and interseasonal changes. Lowest pH (7.8) and highest pCO2 (658.3 µatm) values measured during a cold-water intrusion event in the non-upwelling season were similar to those minimum values reported from upwelling season (pH = 7.8, pCO2 = 643.5 µatm), unveiling that natural acidification also occurs sporadically in the non-upwelling season. This affects the interaction of photosynthesis, respiration, calcification and carbonate dissolution and the resulting diel cycle of pH and pCO2 in the reefs of Bahía Culebra. During the non-upwelling season, the aragonite saturation state (Ωa) rises to values of > 3.3 and during the upwelling season falls below 2.5. The Ωa threshold values for coral growth were derived from the correlation between measured Ωa and coral linear extension rates which were obtained from the literature and suggest that future ocean acidification will threaten the continued growth of reefs in Bahía Culebra. These data contribute to building a better understanding of the carbonate system dynamics and coral reefs' key response (e.g., coral growth) to natural low-pH conditions, in upwelling areas in the eastern tropical Pacific and beyond.

Spatio-Temporal Variation in Effects of Upwelling on the Fatty Acid Composition of Benthic Filter Feeders in the Southern Benguela Ecosystem: Not All Upwelling Is Equal

PubMed Central

McQuaid, Christopher David; Noyon, Margaux

2016-01-01

Variability in mesoscale nearshore oceanographic conditions plays an important role in the distribution of primary production and food availability for intertidal consumers. Advection of nutrient rich waters by upwelling usually allows the proliferation of diatoms, later replaced by dinoflagellates. We examined upwelling effects on the fatty acid (FA) signature of a benthic intertidal filter feeder to identify its response to pulsed variability in food availability. The study took place in two contrasting seasons and at two upwelling and two non-upwelling sites interspersed within the southern Benguela upwelling system of South Africa. We investigated the FA composition of the adductor muscles and gonads of the mussel Mytilus galloprovincialis to assess how FA are apportioned to the different tissues and whether this changes between upwelling and non-upwelling conditions. In situ temperature loggers used to identify upwelling conditions at the four sites indicated that such events occurred only at the upwelling centres and only in summer. Tissues differed strongly, with gonads presenting a higher proportion of essential FAs. This could reflect the faster turnover rate of gonad tissue or preferential retention of specific FA for reproductive purposes. FA composition did not vary as a direct function of upwelling, but there were strong dissimilarities among sites. Upwelling influenced mussel diets at one upwelling site while at the other, the expected signature of upwelling was displaced downstream of the core of upwelling. Condition Index (CI) and Gonad Index (GI) differed among sites and were not influenced by upwelling, with GI being comparable among sites. In addition, FA proportions were consistent among sites, indicating similar food quality and quantity over time and under upwelling and non-upwelling conditions. This suggests that the influence of upwelling on the west coast of South Africa is pervasive and diffuse, rather than discrete; while nearshore retention or advection of upwelled water is critical and site-specific so that the effects of upwelling differ even among sites categorised as upwelling centres. PMID:27570968

A long history of equatorial deep-water upwelling in the Pacific Ocean

NASA Astrophysics Data System (ADS)

Zhang, Yi Ge; Pagani, Mark; Henderiks, Jorijntje; Ren, Haojia

2017-06-01

Cold, nutrient- and CO2-rich waters upwelling in the eastern equatorial Pacific (EEP) give rise to the Pacific cold tongue. Quasi-periodic subsidence of the thermocline and attenuation in wind strength expressed by El Niño conditions decrease upwelling rates, increase surface-water temperatures in the EEP, and lead to changes in regional climates both near and far from the equatorial Pacific. EEP surface waters have elevated CO2 concentrations during neutral (upwelling) or La Niña (strong upwelling) conditions. In contrast, approximate air-sea CO2 equilibrium characterizes El Niño events. One hypothesis proposes that changes in physical oceanography led to the establishment of a deep tropical thermocline and expanded mixed-layer prior to 3 million years ago. These effects are argued to have substantially reduced deep-water upwelling rates in the EEP and promoted a "permanent El Niño-like" climate state. For this study, we test this supposition by reconstructing EEP "excess CO2" and upwelling history for the past 6.5 million years using the alkenone-pCO2 methodology. Contrary to previous assertions, our results indicate that average temporal conditions in the EEP over the past ∼6.5 million years were characterized by substantial CO2 disequilibrium and high nutrient delivery to surface waters - characteristics that imply strong upwelling of deep waters. Upwelling appears most vigorous between ∼6.5 to 4.5 million years ago coinciding with high accumulation rates of biogenic material during the late Miocene - early Pliocene "biogenic bloom".

Pliocene Warm Period Upwelling in the Southern Benguela Region

NASA Astrophysics Data System (ADS)

Petrick, B. F.; McClymont, E.; Felder, S.; Leng, M. J.; Rosell Mele, A.; Rueda, G.

2014-12-01

The mid-Pliocene has been proposed as a possible analogue for understanding future climate change and testing climate models. Previous work has shown that during the Pliocene the major upwelling systems were relatively warm, and thus either inactive, contracted, or upwelling warmer waters than present. Here we examine evidence from a core site located on the margins of the modern Benguela upwelling system, to test whether the upwelling cells had migrated or contracted relative to present during the Pliocene. We applied several organic geochemistry proxies and foraminiferal analyses to reconstruct the Pliocene history of ODP site 1087 (31º28'S, 15º19'E, 1374m water depth), including the UK37' index and TEX86 index (for reconstructing sea surface temperatures), chlorins (for estimating primary productivity) and planktonic foraminifera assemblages (for inferring water mass changes). These proxies show that between 3.5 and 3.0 Ma the southern Benguela region was significantly cooler than the northern Benguela region, the latter where the main upwelling cells are found today. Coupled with higher primary production, a shift in planktonic foraminifera assemblage, and an offset between the UK37' index and TEX86 index, we infer that more extensive upwelling was present in the southern Benguela region during the Pliocene. We infer that the main Benguela upwelling cells had shifted southward relative to today, as a result of changes in the local wind field. We find evidence for pronounced cooling and a shift in the planktonic foraminifera assemblage during the M2 and KM2 glacial stages, showing a sensitivity of Benguela upwelling to these short-lived climate events.

Open oceanic productivity changes at mid-latitudes during interglacials and its relation to the Atlantic Meridional Overturning Circulation

NASA Astrophysics Data System (ADS)

Nave, Silvia; Lebreiro, S.; Kissel, C.; Guihou, A.; Figueiredo, M. O.; Silva, T. P.; Michel, E.; Cortijo, E.; Labeyrie, L.; Voelker, A.

2010-05-01

Variations in the interactions between marine ecosystems, thermohaline circulation, external forcing and atmospheric greenhouse gases concentrations are not yet fully represented in detailed models of the glacial-interglacial transitions. Most of the research on past productivity changes has been focused so far on high-productivity areas such as upwelling areas (i.e. equatorial or coastal upwelling areas) even though those regions appraise only a little part of the ocean. Accordingly, the importance of oceanic productivity changes over glacial/interglacial cycles should be better known, as it may also play an important role on the loss of photosynthetically generated carbon as a central mechanism in the global carbon cycle. Its understanding will help quantifying the parameters needed to run comprehensive climate models, and subsequently help to better predict climate change for the near future. A high-resolution study of oceanic productivity, bottom water flow speed, surface and deep-water mass, bottom water ventilation, and terrestrial input changes during two interglacials (Holocene and Marine Isotope Stage [MIS] 5), at an open ocean site approximately 300 km west off Portugal [IMAGES core MD01-2446: 39°03'N, 12°37'W, 3547 m water depth] was conducted within the AMOCINT project (ESF-EUROCORES programme, 06-EuroMARC-FP-008). Even though siliceous productivity is expectedly low for oceanic regions, it shows a robust and consistent pattern with increased values during cold phases of MIS 5, and during the glacial stages 4 and 6 suggesting higher nutrient availability, during these periods. The same pattern is observed for MIS2 and the last deglaciation. The opal record is fully supported by the organic carbon content and to the estimated productivity using foraminifera based FA20 and SIMMAX.28 transfer functions for a near location. The benthic δ13C record suggests less North Atlantic Deep Water (NADW) coincident with periods of higher productivity. The grain-size variations and magnetic properties, suggests stronger/faster bottom currents during cold phases, in agreement with a stronger component of Antarctic sourced Bottom Water (AABW) at the Eastern Atlantic Margin. The probable enhancement of AABW during these periods may also account for a higher preservation of siliceous biogenic particles at the ocean floor sediment/water interface. Given that MD01-2446 is placed far from the continent, productivity records should mainly reflect local conditions. Still, we should not fully discard the preservation of punctual influence of coastal processes derived from upwelling filament plumes at the Estremadura Plateau. Lebreiro et al., 1997 [Paleoceanography, 12, 718-727] reported for a near location, the dominance of pre-upwelling and post-upwelling related foraminifera species during MIS 6 implying less intense or persistent upwelling during MIS 6 than MIS 4. On the contrary, opal and organic carbon data reveals a clear increase in productivity also during MIS 6, reinforcing the idea that productivity variations are likely related to open ocean conditions and therefore, nutrients availability associated to the Atlantic Meridional Oceanic Circulation.

Decadal changes in the Canary Current Upwelling Ecosystem

NASA Astrophysics Data System (ADS)

Santos, A. M.; Luis, J. M.; Relvas-Almeida, P.

2013-12-01

The Canary Current Upwelling System (CCUS) covers the latitudinal range 12-43 degrees N and has some singularities in relation to the other three major Eastern Boundary Upwelling Systems (EBUS), namely a major interruption in the continuity of the system at the Strait of Gibraltar and it is the only one with a sardine species from a different genus (Sardina vs Sardinops). Long-term trends in ocean temperature and coastal upwelling were investigated using the AVHRR Pathfinder SST (sea surface temperature) Version 5.1 dataset, in situ SST from the International Comprehensive Ocean-Atmosphere Data Set (ICOADS), and upwelling indices from the Pacific Fisheries Environmental Laboratory (PFEL). The analysis is applied to the eastern boundary of the North Atlantic, from 10 to 45 degrees N extending until 30 degrees W, focusing mainly in the CCUS because the strong dynamic link between the atmosphere and the ocean makes upwelling regions highly sensitive to global change and ideal to monitor and investigate its effects. The detail in SST variability results in a large extent from the fine analysis and the numerical processing carefully designed to avoid trend bias in the climatological studies. The obtained fields of SST trends show a generalized warming of the entire region. However, alternate patches of significantly different warming rates are observed, ranging from large scale down to mesoscale. Known coastal upwelling features are seen to warm at a lower rate than corresponding offshore waters, pointing to an intensification of the upwelling in the last decades. Wind data are used to attempt to explain the variability of some upwelling structures. Our results evidence the main role that mesoscale processes play in the modulation of the spatial and temporal variability of SST, namely at the decadal scale. This result prevents any global conclusion about the intensification of the upwelling at the scale of the entire CCUS. The bulk of the sardine population is located in the southern part of CCUS off NW Africa. Important fluctuations in landings have been observed in the last 70 years but they seem to be out of phase between the two sub-regions - the northern CCUS (Iberia) and southern CCUS (NW Africa). The explanation for these fluctuations has been related, at least partially, to environmental drivers but also to changes in exploitation. Landing time series of sardine, anchovy and sardinella were used to perform an exploratory analysis to investigate the relationships between small pelagic fish species in the CCUS and decadal changes in SST and coastal upwelling. This is a contribution to FCT (Portuguese Science and Technology Foundation) funded projects LONGUP (PTDC/AAC-CLI/105296/2008) and MODELA (PTDC/MAR/098643/2008).

Dynamical consequences of compositional and thermal density stratification beneath spreading centers

NASA Technical Reports Server (NTRS)

Sotin, C.; Parmentier, E. M.

1989-01-01

Dynamical consequences of compositional buoyancy and the combined effects of compositional and thermal buoyancy on mantle flow and crustal production are explored. The results show that for a low enough mantle viscosity, buoyant upwelling can significantly enhance the crustal thickness relative to that which would be produced by plate spreading alone, while for a mantle viscosity of 10 to the 22nd Pa s, upwelling due to plate spreading is dominant and crustal thickness is predicted to be a function of spreading rate. The results indicate that thermal and compositional density variations result in opposing buoyancy forces that can cause time-dependent upwelling.

Progress on upwelling studies in the China seas

NASA Astrophysics Data System (ADS)

Hu, Jianyu; Wang, Xiao Hua

2016-09-01

East Asian marginal seas surrounding China exhibit rich ocean upwelling, mostly in response to the southwesterly summer monsoon. Upwelling in the China seas, namely, the South China Sea, the Taiwan Strait, the East China Sea, the Yellow Sea, and the Bohai Sea, has become increasingly important because the potential changes in the upwelling may have dramatic ecosystem, socioeconomic, and climate impacts. This paper reviews the progress of upwelling studies in the China seas since the year 2000, by presenting the principal characteristics and new understanding of 12 major upwelling regions in the China seas. Upwelling exhibits long-term variability at intraseasonal to multidecadal scales as well as short-term variability frequently caused by tropical cyclones. It is also associated with the El Niño-Southern Oscillation, local environmental variation, and biogeochemical factors. The coastal upwelling around Hainan Island and the upwelling or cold dome northeast of Taiwan Island are specifically highlighted because they have attracted great interest for decades. This paper summarizes upwelling mechanisms in terms of wind, topography, tide, stratification, and background flow, with applications mostly to the China seas. Finally, we propose some topics for future upwelling research, i.e., potential intensification of coastal upwelling under global climate change, downwelling, intrusion of upwelling into coastal embayments, and the influence of upwelling on fishery and biogeochemical processes.

Patterns of primary productivity and biomass in a coastal upwelling region

NASA Astrophysics Data System (ADS)

Small, Lawrence F.; Menzies, David W.

1981-02-01

Average distributions of chlorophyll α during upwelling in areas of smooth bathymetry off Oregon have been computed from historical data. Chlorophyll concentrations in cross-shelf sections over the Oregon continental shelf (44°40'N) were similar to those in cross-shelf sections off northwest Africa during JOINT-1 studies but differed from those in similar sections over an adjacent narrow region of the Oregon shelf (44°55'N to 45°12'N). The fact that larger concentration differences can occur along short sections of one coastline than between upwelling regions half a world apart bears on the time and space scales of sampling and might have bearing on the support and distributions of other trophic levels. Relationships between the local winds and the broader-scale BAKUN (1975) upwelling indices were used to classify various phytoplankton biomass and primary productivity distributions according to whether they were in strong upwelling steady state, weak upwelling steady state, or one of two transition states. The upwelling steady state conforms to the 'upwelling event' scale (about 3 to 10 days) of WALSH, WHITLEDGE, KELLEY, HUNTSMAN and PILLSBURY (1977) and the transition state of approximately one-day duration might specify the critical scale for driving the upwelling off Oregon. Under strong steady-state upwelling in early summer a single band of high primary productivity and biomass develops in the surface layer parallel to the bottom contours, but under similar upwelling conditions in later summer a two-celled zonal circulation occurs and two parallel bands develop. Our strong upwelling distributions are discussed in light of current models of the Oregon upwelling system. Maintenance of biological properties through time in the upwelling bands is also discussed. Under weak steady-state upwelling the primary productivity and biomass bands are farther inshore or immediately against the coast. Productivity in the weak upwelling bands can be twice that of the strong upwelling bands and often 20 times that in surrounding water. Under transient conditions in which the local winds are favorable for strong upwelling but the slower-responding Bakun index indicates weak upwelling, chlorophyll distributions change within a day to resemble distributions during strong steady-state upwelling. Under transient conditions in which the local winds weaken dramatically but the Bakun index still indicates strong upwelling, chlorophyll concentrations are high and widely distributed throughout the upwelling region.

Total and mesoscale long-range offshore transport of organic carbon from the Canary Upwelling System to the open North Atlantic

NASA Astrophysics Data System (ADS)

Lovecchio, Elisa; Gruber, Nicolas; Münnich, Matthias; Byrne, David; Lachkar, Zouhair

2017-04-01

The ocean's biological pump is often simplified to a purely vertical process. Nevertheless, the horizontal transport of organic carbon can be substantial, especially in coastal regions such as the Canary Upwelling System (CanUS), one of the four major Eastern Boundary Upwelling Systems, characterized by high shelf productivity and an intense lateral exchange of mass and tracers with the adjacent oligotrophic waters. Despite its importance, the magnitude of this lateral flux has not yet been constrained. Here, we quantify the lateral export of organic carbon from the CanUS to the open North Atlantic using the Regional Ocean Modeling System (ROMS) coupled to a biogeochemical ecosystem module. The model is run on an Atlantic telescopic grid with a strong refinement towards the north-western African shelf, to combine an eddy-resolving resolution in the region of study with a full Atlantic basin perspective. Our results reveal that over the whole CanUS more than a third of the Net Community Production (NCP) in the nearshore 100 km is transported offshore, amounting to about 19 Tg C yr-1. The offshore transport dominates the lateral fluxes up to 1500 km into the subtropical North Atlantic, along the way adding organic carbon to the upper 100 m at rates of between 8% and 34% of the alongshore average NCP. The remineralization at depth of this extra organic carbon leads to strongly negative vertically-integrated NCP throughout the whole offshore region of the CanUS, i.e. it makes the offshore region net heterotrophic. Substantial subregional variability shapes the spatial pattern of the fluxes in the CanUS. In particular, the central subregion surrounding Cape Blanc is the most efficient in terms of collecting and laterally exporting the organic carbon, resulting in a sharp peak of watercolumn heterotrophy. A decomposition of the organic carbon fluxes into a time-mean component and a time-variable, i.e., mesoscale component reveals a large contribution of the mesoscale activity to the offshore flux of organic carbon at every latitude. The mesoscale offshore transport ranges in intensity between 20% and 50% of the mean flux, reaching as far offshore as the mean transport. In its alongshore component, the mesoscale transport opposes the mean transport, recirculating laterally the organic carbon against the mean currents. Fundamental differences between the contributions of filaments, cyclonic and anticyclonic eddies to the transport of organic carbon are highlighted and discussed in a subregional perspective.

Does mesoscale matters in decadal changes observed in the northern Canary upwelling system?

NASA Astrophysics Data System (ADS)

Relvas, P.; Luís, J.; Santos, A. M. P.

2009-04-01

The Western Iberia constitutes the northern limb of the Canary Current Upwelling System, one of the four Eastern Boundary Upwelling Systems of the world ocean. The strong dynamic link between the atmosphere and the ocean makes these systems highly sensitive to global change, ideal to monitor and investigate its effects. In order to investigate decadal changes of the mesoscale patterns in the Northern Canary upwelling system (off Western Iberia), the field of the satellite-derived sea surface temperature (SST) trends was built at the pixel scale (4x4 km) for the period 1985-2007, based on the monthly mean data from the Advanced Very High Resolution Radiometer (AVHRR) on board NOAA series satellites, provided by the NASA Physical Oceanography Distributed Active Archive Center (PO.DAAC) at the Jet Propulsion Laboratory. The time series were limited to the nighttime passes to avoid the solar heating effect and a suite of procedures were followed to guarantee that the temperature trends were not biased towards the seasonally more abundant summer data, when the sky is considerably clear. A robust linear fit was applied to each individual pixel, crossing along the time the same pixel in all the processed monthly mean AVHRR SST images from 1985 until 2007. The field of the SST trends was created upon the slopes of the linear fits applied to each pixel. Monthly mean SST time series from the one degree enhanced International Comprehensive Ocean-Atmosphere Data Set (ICOADS) and from near-shore measurements collected on a daily basis by the Portuguese Meteorological Office (IM) are also used to compare the results and extend the analysis back until 1960. A generalized warming trend is detected in the coastal waters off Western Iberia during the last decades, no matter which data set we analyse. However, significant spatial differences in the warming rates are observed in the satellite-derived SST trends. Remarkably, off the southern part of the Western Iberia the known upwelling pattern is clearly reflected in the warming field. There, the coastal upwelled waters show a weak warming trend when compared with the offshore waters. If we assume that the SST contrast between coastal and offshore waters is a proxy for the upwelling intensity, then this fact suggests the enhancement of the upwelling regime off SW Iberia since 1985. Although the seasonal nature of the upwelling in the region, the strengthening must be significant since it leaves a coherent imprint in the annual warming field. An analysis done on a monthly basis reveals that the central months of the classical upwelling season (July to September) are the responsible for this coherent mesoscale structure observed in the warming field off SW Iberia. The same conclusions are not clear for the mesoscale structure further north, where no significant differences are observed between the coastal and offshore warming rates. To investigate if our results, obtained for the period with satellite coverage (1985-2007), could be extended or not until 1960, we computed an upwelling index as the SST difference between coastal and offshore ICOADS SST. The analysis revealed that the trends are different whether we consider the whole time series or only the period investigated with the satellite imagery. We can suppose a relatively unchanged upwelling regime if we consider the period 1960-2005, but a rapid increase of intensity if we consider the period from 1985 onwards, particularly in the most southern regions, in agreement with the satellite imagery analysis. Our present results point out that mesoscale activity can account for larger changes in local SST than global average trends. In Eastern Boundary Upwelling Systems, where mesoscale structures play a major role in the description of the upwelling regime, to rely on sparse spatial observations to hypothesize about the decadal behaviour of the upwelling intensity at the basin scale may be questionable.

Spatial variability of Spanish sardine (Sardinella aurita) abundance as related to the upwelling cycle off the southeastern Caribbean Sea

PubMed Central

Cárdenas, Juan José; Achury, Alina; Astor, Yrene

2017-01-01

The Sardinella aurita fishery off northeastern Venezuela, region of seasonal wind-driven coastal-upwelling, accounts for 90% of the Caribbean Sea small pelagic catch. This law-protected artisanal fishery takes place up to ~10 km offshore. The spatial distribution, number of schools, and biomass of S. aurita were studied using eight hydro-acoustic surveys (1995–1998). The study included the analysis of satellite-derived sea surface temperature and chlorophyll-a. Surveys were grouped by strong, weak, and transitional upwelling seasons. Relationships between these observations were analyzed using Generalized Additive Models. Results show that during the primary upwelling season (January-May) sardines were widely distributed in upwelling plumes that extended up to 70 km offshore. In the other hand, during the weak upwelling season (September-October) higher sardine densities were found within 10 Km off the coastal upwelling foci. The number of small pelagic schools was directly correlated with small pelagic densities; however, regardless of the season, higher numbers of small pelagic schools were always closer to the shoreline, especially during warm conditions. These two behaviors increase the availability and catchability of sardines for the artisanal fishery during the warm season, regardless of the total stock size. Using this evidence, we pose the hypothesis that the collapse of the regional S. aurita fishery in 2005 was due to a combination of stressful habitat conditions sustained since 2004. These included bottom-up factors due to food scarcity caused by weak upwelling, combined with top-down stress due to overfishing, as sardines accumulated in narrow diminished upwelling plumes located close to the coast. The increased catchability within easily accessible upwelling foci led to the demise of this biological resource, which as of 2014 had not yet recovered. Environmental conditions affecting the sardine habitat needs to be taken into account for the management of this stock. For example, during years with weak upwelling, special measures should be taken during the warm season on the second half of the year to avoid further pressure on the stock. PMID:28654685

Remote sensing and ichthyoplankton ecology of coastal upwelling fronts off central California

NASA Astrophysics Data System (ADS)

Bjorkstedt, Eric Peter

1998-11-01

Recruitment to many marine populations is determined by processes affecting survival and transport of planktonic larvae. Coastal upwelling poses a trade-off between larval access to high productivity supported by upwelled nutrients and increased risk of offshore transport and failure to return to coastal habitats. I used plankton surveys, remote sensing, and a simple model to investigate the role of coastal upwelling fronts and behavior in pelagic ecology and recruitment success, focussing on rockfish (Sebastes spp.) off central California. Distributions of early stage larvae suggest that coastal upwelling fronts reduce offshore transport of rockfish larvae, in contrast to distributions of taxa with life histories that minimize larval exposure to strong upwelling. Coincident distributions of larval fish, prey (i.e., small copepods and invertebrate eggs) and phytoplankton patches indicate that coastal upwelling fronts provide enhanced foraging conditions for larvae. Thus, coastal upwelling fronts may allow coastal taxa to successfully exploit high productivity during the upwelling season while reducing the risk of offshore transport. I developed a novel method for utilizing a single HF radar to resolve currents and detect fronts that matched sea surface temperature fronts generated by coastal upwelling. Fronts and currents detected with NF radar affect distributions and transport of planktonic larval fish and intertidal barnacle larvae, demonstrating that remote sensing with HF radar can support field and modelling research on ecological dynamics in coastal marine systems. I used an empirically-based model that incorporated the advection-foraging trade-off and long-distance swimming as an active settlement behavior to investigate optimal settlement strategies as a function of pelagic transport and growth. For parameters loosely describing pelagic stages of rockfish, the model predicts optimal settling strategies (ages and sizes) for pelagic juveniles that roughly match observed values for settling rockfish and suggests optimal spawning locations for adults. The model suggests that offshore transport is more important than growth in determining recruitment success. Thus, coastal upwelling fronts may favor recruitment more by reducing offshore transport than by providing rich food resources. Results of this model represent an initial step towards determining the role of active settlement behaviors in population dynamics and life history evolution.

Association of whale sharks (Rhincodon typus) with thermo-biological frontal systems of the eastern tropical Pacific.

PubMed

Ryan, John P; Green, Jonathan R; Espinoza, Eduardo; Hearn, Alex R

2017-01-01

Satellite tracking of 27 whale sharks in the eastern tropical Pacific, examined in relation to environmental data, indicates preferential occupancy of thermo-biological frontal systems. In these systems, thermal gradients are caused by wind-forced circulation and mixing, and biological gradients are caused by associated nutrient enrichment and enhanced primary productivity. Two of the frontal systems result from upwelling, driven by divergence in the current systems along the equator and the west coast of South America; the third results from wind jet dynamics off Central America. All whale sharks were tagged near Darwin Island, Galápagos, within the equatorial Pacific upwelling system. Occupancy of frontal habitat is pronounced in synoptic patterns of shark locations in relation to serpentine, temporally varying thermal fronts across a zonal expanse > 4000 km. 80% of shark positions in northern equatorial upwelling habitat and 100% of positions in eastern boundary upwelling habitat were located within the upwelling front. Analysis of equatorial shark locations relative to thermal gradients reveals occupancy of a transition point in environmental stability. Equatorial subsurface tag data show residence in shallow, warm (>22°C) water 94% of the time. Surface zonal current speeds for all equatorial tracking explain only 16% of the variance in shark zonal movement speeds, indicating that passive drifting is not a primary determinant of movement patterns. Movement from equatorial to eastern boundary frontal zones occurred during boreal winter, when equatorial upwelling weakens seasonally. Off Peru sharks tracked upwelling frontal positions within ~100-350 km from the coast. Off Central America, the largest tagged shark (12.8 m TL) occupied an oceanic front along the periphery of the Panama wind jet. Seasonal movement from waning equatorial upwelling to productive eastern boundary habitat is consistent with underlying trophic dynamics. Persistent shallow residence in thermo-biological frontal zones suggests the role of physical-biological interactions that concentrate food resources.

Association of whale sharks (Rhincodon typus) with thermo-biological frontal systems of the eastern tropical Pacific

PubMed Central

Green, Jonathan R.; Espinoza, Eduardo; Hearn, Alex R.

2017-01-01

Satellite tracking of 27 whale sharks in the eastern tropical Pacific, examined in relation to environmental data, indicates preferential occupancy of thermo-biological frontal systems. In these systems, thermal gradients are caused by wind-forced circulation and mixing, and biological gradients are caused by associated nutrient enrichment and enhanced primary productivity. Two of the frontal systems result from upwelling, driven by divergence in the current systems along the equator and the west coast of South America; the third results from wind jet dynamics off Central America. All whale sharks were tagged near Darwin Island, Galápagos, within the equatorial Pacific upwelling system. Occupancy of frontal habitat is pronounced in synoptic patterns of shark locations in relation to serpentine, temporally varying thermal fronts across a zonal expanse > 4000 km. 80% of shark positions in northern equatorial upwelling habitat and 100% of positions in eastern boundary upwelling habitat were located within the upwelling front. Analysis of equatorial shark locations relative to thermal gradients reveals occupancy of a transition point in environmental stability. Equatorial subsurface tag data show residence in shallow, warm (>22°C) water 94% of the time. Surface zonal current speeds for all equatorial tracking explain only 16% of the variance in shark zonal movement speeds, indicating that passive drifting is not a primary determinant of movement patterns. Movement from equatorial to eastern boundary frontal zones occurred during boreal winter, when equatorial upwelling weakens seasonally. Off Peru sharks tracked upwelling frontal positions within ~100–350 km from the coast. Off Central America, the largest tagged shark (12.8 m TL) occupied an oceanic front along the periphery of the Panama wind jet. Seasonal movement from waning equatorial upwelling to productive eastern boundary habitat is consistent with underlying trophic dynamics. Persistent shallow residence in thermo-biological frontal zones suggests the role of physical-biological interactions that concentrate food resources. PMID:28854201

Spectral measurements of ocean-dumped wastes tested in the marine upwelled spectral signature laboratory

NASA Technical Reports Server (NTRS)

Witte, W. G.; Usry, J. W.; Whitlock, C. H.; Gurganus, E. A.

1979-01-01

Transmission and inherent upwelled radiance measurements were made of various mixtures of three ocean-dumped industrial plant wastes in artificial seawater. Laboratory analyses were made of the physical and chemical properties of the various mixtures. These results and the laboratory measurements of beam attenuation and inherent upwelled radiance indicate a variety of chemical and spectral responses when industrial wastes are added to artificial seawater. In particular, increased levels of turbidity did not always cause increased levels of inherent reflectance.

Temporal variability and phylogenetic characterization of planktonic anammox bacteria in the coastal upwelling ecosystem off central Chile

NASA Astrophysics Data System (ADS)

Galán, Alexander; Molina, Verónica; Belmar, Lucy; Ulloa, Osvaldo

2012-01-01

The phylogenetic affiliation and temporal variability in the abundance of planktonic anammox bacteria were studied at a time-series station above the continental shelf off central Chile (∼36°S; bottom depth 93 m), a wind-driven, seasonal upwelling area, between August 2006 and April 2008. The study was carried out by cloning and sequencing the 16S rRNA gene and by using catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). Our results showed the presence of a single anammox bacteria-like ribotype during both upwelling and non-upwelling seasons, which was phylogenetically associated with a recently described oxygen-minimum-zone subcluster within the Candidatus Scalindua clade. Moreover, clear differences were observed in the temporal and vertical distribution of anammox cells. During the upwelling season (austral spring-summer), relatively high abundances (∼5500 cells mL -1) and large cells (0.8 μm 3-75.7 fg C cell -1) were found below 20 m depth. In contrast, during the non-upwelling season (austral fall-winter), lower abundances (∼600 cells mL -1) and smaller cells (0.1 μm 3-22.8 fg C cell -1) were found, predominantly associated with the bottom layer. Overall, our results indicate that the abundance and vertical distribution of anammox planktonic assemblages are related to the occurrence of seasonal, wind-driven, coastal upwelling, which in turn appears to offer favorable conditions for the development of these microorganisms. The dominance of a unique anammox bacteria-like ribotype could be related to the high environmental variability observed in the system, which prevents the establishment of other anammox lineages.

A high-resolution Late Quaternary upwelling record from the anoxic Cariaco Basin, Venezuela

NASA Astrophysics Data System (ADS)

Peterson, L. C.; Overpeck, J. T.; Kipp, N. G.; Imbrie, J.

1991-02-01

Results are presented of a high-resolution study of the planktonic foraminiferal faunas from two piston cores recovered from the Cariaco Basin in the southern Caribbean Sea. The Cariaco Basin is a small anoxic marine basin on the northern continental margin of Venezuela in an area today characterized by both seasonal trade wind-induced upwelling and pronounced dry and wet seasons. Our data indicate that large changes in the intensity of upwelling, and hence trade wind strength, occurred in this region during the last glacial-interglacial transition and throughout the Holocene. During the last glacial lowstand of sea level, the Cariaco Basin was effectively isolated from the open Caribbean along its northern margin by the then largely emergent Tortuga Bank. Oxic conditions existed in the deep Cariaco Basin at this time, and surface productivity was low. About 12,600 years ago, the abrupt initiation of strong upwelling over the basin and the onset of permanent anoxia in the deep waters are coincident with the rapid rise of sea level that accompanied the peak interval of meltwater discharge from the Laurentide Ice Sheet into the Gulf of Mexico. Strong upwelling between 12,600 and about 10,000 years ago may be related to intensified trade winds resulting, in part, from cooler sea surface temperatures in the Caribbean and Gulf of Mexico. After about 10,000 years ago, upwelling intensity was reduced, though highly variable. A preliminary frequency domain analysis of the Holocene portion of the Cariaco Basin time series suggests that solar forcing may explain a significant component of the century-scale variability observed in the record of upwelling and trade wind strength.

The relationship between Arabian Sea upwelling and Indian Monsoon revisited

NASA Astrophysics Data System (ADS)

Yi, Xing; Zorita, Eduardo; Hünicke, Birgit

2015-04-01

Coastal upwelling is important to marine ecosystems and human activities. It transports nutrient-rich deep water mass that supports marine biological productivity. In this study, we aim to characterize the large-scale climate forcings that drive upwelling along the western Arabian Sea coast. Studies based on ocean sediments suggest that there is a link between this coastal upwelling system and the Indian summer monsoon. However, a more direct method is needed to examine the influence of various forcings on upwelling. For this purpose, we analyse a high-resolution (about 10 km) global ocean simulation (denoted STORM), which is based on the MPI-OM model developed by the Max-Planck-Institute for Meteorology in Hamburg driven by the global meteorological reanalysis NCEP over the period 1950-2010. This very high spatial resolution allows us to identify characteristics of the coastal upwelling system. We compare the simulated upwelling velocity of STORM with two traditional upwelling indices: along-shore wind speed and sea surface temperature. The analysis reveals good consistency between these variables, with high correlations between coastal upwelling and along-shore wind speed (r=0.85) as well as coastal sea surface temperature (r=-0.77). To study the impact of the monsoon on the upwelling we analyse both temporal and spatial co-variability between upwelling velocity and the Indian summer monsoon index. The spatial analysis shows that the impact of the monsoon on the upwelling is concentrated along the coast, as expected. However, somewhat unexpectedly, the temporal correlation between the coastal upwelling and the monsoon index is rather weak (r=0.26). Also, the spatial structure of upwelling in the Arabian Sea as revealed by a Principal Component Analysis is rather rich, indicating that factors other than the Monsoon are also important drivers of upwelling. In addition, no detectable trend in our coastal upwelling is found in the simulation that would match the prediction of a strengthening of upwelling under anthropogenic radiative forcing.

Does upwelling intensity influence feeding habits and trophic position of planktivorous fish?

NASA Astrophysics Data System (ADS)

Lopez-Lopez, Lucia; Preciado, Izaskun; Muñoz, Isabel; Decima, Moira; Molinero, Juan Carlos; Tel, Elena

2017-04-01

Food web configuration is shaped by many factors, including primary production patterns and oceanographic features, such as upwelling events. In this study, we investigate variability in the trophic position, food web interlinks and energy pathways of four planktivorous demersal fish in the Southern Bay of Biscay- NE Atlantic. The study area is exposed to upwelling events of varying intensity and shows a significant spatial gradient along the coast. The two sampling years were characterized by markedly different conditions, with weak summer upwelling in 2012 and an intense upwelling season in 2013. We used a complementary approach based on stomach content analysis (SCA) and stable isotope analysis (SIA) to test the effects of upwelling intensity and persistence on the food-web. In particular we investigated whether different intensities shift the main flow of energy between the pelagic and benthic energy pathways. We found conspicuous interannual changes in the isotopic POM, whose δ15N was 2.5‰ lower during the productive 2013 season. Interannual changes in the isotopic signature of the fish species were also detected, although their values did not mirror variability at the basal level. The SCA results did not match the isotopic changes, which likely reflected dietary adjustments of the species during summer. The upwelling intensity gradient along the coast did not affect the nitrogen isotopic ratio of any group, however there was a significant effect of such gradient on the carbon isotopic ratio of the fish and euphausiid species. This effect was likely related to the higher primary production associated with intense upwelling conditions.

Potential and timescales for oxygen depletion in coastal upwelling systems: A box-model analysis

NASA Astrophysics Data System (ADS)

Harrison, C. S.; Hales, B.; Siedlecki, S.; Samelson, R. M.

2016-05-01

A simple box model is used to examine oxygen depletion in an idealized ocean-margin upwelling system. Near-bottom oxygen depletion is controlled by a competition between flushing with oxygenated offshore source waters and respiration of particulate organic matter produced near the surface and retained near the bottom. Upwelling-supplied nutrients are consumed in the surface box, and some surface particles sink to the bottom where they respire, consuming oxygen. Steady states characterize the potential for hypoxic near-bottom oxygen depletion; this potential is greatest for faster sinking rates, and largely independent of production timescales except in that faster production allows faster sinking. Timescales for oxygen depletion depend on upwelling and productivity differently, however, as oxygen depletion can only be reached in meaningfully short times when productivity is rapid. Hypoxia thus requires fast production, to capture upwelled nutrients, and fast sinking, to deliver the respiration potential to model bottom waters. Combining timescales allows generalizations about tendencies toward hypoxia. If timescales of sinking are comparable to or smaller than the sum of those for respiration and flushing, the steady state will generally be hypoxic, and results indicate optimal timescales and conditions exist to generate hypoxia. For example, the timescale for approach to hypoxia lengthens with stronger upwelling, since surface particle and nutrient are shunted off-shelf, in turn reducing subsurface respiration and oxygen depletion. This suggests that if upwelling winds intensify with climate change the increased forcing could offer mitigation of coastal hypoxia, even as the oxygen levels in upwelled source waters decline.

Geographical gradients in selection can reveal genetic constraints for evolutionary responses to ocean acidification

PubMed Central

Gaitán-Espitia, Juan Diego; Marshall, Dustin; Dupont, Sam; Bacigalupe, Leonardo D.; Bodrossy, Levente; Hobday, Alistair J.

2017-01-01

Geographical gradients in selection can shape different genetic architectures in natural populations, reflecting potential genetic constraints for adaptive evolution under climate change. Investigation of natural pH/pCO2 variation in upwelling regions reveals different spatio-temporal patterns of natural selection, generating genetic and phenotypic clines in populations, and potentially leading to local adaptation, relevant to understanding effects of ocean acidification (OA). Strong directional selection, associated with intense and continuous upwellings, may have depleted genetic variation in populations within these upwelling regions, favouring increased tolerances to low pH but with an associated cost in other traits. In contrast, diversifying or weak directional selection in populations with seasonal upwellings or outside major upwelling regions may have resulted in higher genetic variances and the lack of genetic correlations among traits. Testing this hypothesis in geographical regions with similar environmental conditions to those predicted under climate change will build insights into how selection may act in the future and how populations may respond to stressors such as OA. PMID:28148831

Weakened stratospheric quasibiennial oscillation driven by increased tropical mean upwelling.

PubMed

Kawatani, Yoshio; Hamilton, Kevin

2013-05-23

The zonal wind in the tropical stratosphere switches between prevailing easterlies and westerlies with a period of about 28 months. In the lowermost stratosphere, the vertical structure of this quasibiennial oscillation (QBO) is linked to the mean upwelling, which itself is a key factor in determining stratospheric composition. Evidence for changes in the QBO have until now been equivocal, raising questions as to the extent of stratospheric circulation changes in a global warming context. Here we report an analysis of near-equatorial radiosonde observations for 1953-2012, and reveal a long-term trend of weakening amplitude in the zonal wind QBO in the tropical lower stratosphere. The trend is particularly notable at the 70-hectopascal pressure level (an altitude of about 19 kilometres), where the QBO amplitudes dropped by roughly one-third over the period. This trend is also apparent in the global warming simulations of the four models in the Coupled Model Intercomparison Project Phase 5 (CMIP5) that realistically simulate the QBO. The weakening is most reasonably explained as resulting from a trend of increased mean tropical upwelling in the lower stratosphere. Almost all comprehensive climate models have projected an intensifying tropical upwelling in global warming scenarios, but attempts to estimate changes in the upwelling by using observational data have yielded ambiguous, inconclusive or contradictory results. Our discovery of a weakening trend in the lower-stratosphere QBO amplitude provides strong support for the existence of a long-term trend of enhanced upwelling near the tropical tropopause.

Implications of Upwells as Hydrodynamic Jets in a Pulse Jet Mixed System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pease, Leonard F.; Bamberger, Judith A.; Minette, Michael J.

This report evaluates the physics of the upwell flow in pulse jet mixed systems in the Hanford Tank Waste Treatment and Immobilization Plant (WTP). Although the initial downward flow and radial flow from jets characteristic of pulse jet mixers (PJMs) has been analyzed, the upwells have received considerably less attention despite having significant implications for vessel mixing. Do the upwells behave like jets? How do the upwells scale? When will the central upwell break through? What proportion of the vessel is blended by the upwells themselves? Indeed, how the physics of the central upwell is affected by multiple PJMs (e.g.,more » six in the proposed mixing vessels), non-Newtonian rheology, and significant multicomponent solids loadings remain unexplored.« less

Linking benthic community structure to terrestrial runoff and upwelling in the coral reefs of northeastern Hainan Island

NASA Astrophysics Data System (ADS)

Li, Xiubao; Wang, Daoru; Huang, Hui; Zhang, Jing; Lian, Jiansheng; Yuan, Xiangcheng; Yang, Jianhui; Zhang, Guoseng

2015-04-01

Near-shore coral reefs in northeastern Hainan Island are close to river mouths and aquaculture ponds, and also located at the center of the Qiongdong Upwelling (QDU). However, it is still unclear how terrestrial runoff and upwelling influence the community composition and spatial distribution of the benthos. During three cruises in 2010 and 2011 in Wenchang, northeastern Hainan Island, we determined a subset of environmental parameters in seawater (e.g. temperature, salinity, DO, dissolved inorganic nutrient (DIN), turbidity and transparency) and macroalgal δ15N and investigated the benthic communities (e.g. live coral cover, coral species richness, juvenile coral density, macroalgal cover and coverage of calcified algae) by video transect and visual census techniques at 10 stations (i.e. 1S-6D). The results showed that the QDU has influenced the reef waters in Wenchang. In 2011, the upwelling started in early May, peaked in July and disappeared in September and most upwelling events lasted for 1-2 weeks between May and July. The results also demonstrated that the reef water was nutrient enriched. Stations close to the river mouth and aquaculture ponds had higher levels of DIN and a higher percentage of ammonia in DIN, and there was consistently lower live coral cover, juvenile coral density and higher macroalgal cover. At some stations in this study, live coral cover was negatively correlated with macroalgal cover (i.e. 2S-6D). Live coral cover, species richness, and juvenile coral density all increased with the distance away from the river outlet and decreased with the rise of DIN. These results suggest that terrestrial runoff and upwelling stimulate nutrient enrichment, and that overgrowing macroalgae has an important influence on the coral communities in northeastern Hainan Island.

Observations of a cycle of intense coastal upwelling and downwelling at the research site of the Shirshov Institute of Oceanology in the Black Sea

NASA Astrophysics Data System (ADS)

Zatsepin, A. G.; Silvestrova, K. P.; Kuklev, S. B.; Piotoukh, V. B.; Podymov, O. I.

2016-03-01

The paper presents the results of joint analysis of the response of vertical temperature and current velocity profile distributions in the coastal zone of the Gelendzhik region of the Black Sea to strong wind forcing in the third ten-day period of September 2013. This forcing was caused by the propagation of an atmospheric cyclone, which first initiated coastal upwelling that was later replaced by downwelling. We formulate a criterion for the development of full coastal upwelling and demonstrate its efficiency. We assume that frequent events of incomplete coastal upwelling and downwelling are associated with changes in the water dynamics (variations in the intensity and direction of the alongshore current) generally not related to local wind forcing.

Upwelling Scales off the Coast of Peru: Comparison of Observation and Model

NASA Astrophysics Data System (ADS)

Vazquez, J.; Chin, T. M.; Armstrong, E. M.

2014-12-01

Upwelling regions of the world's oceans are home to some of the most productive fisheries. Yet these coastal areas provide unique challenges for remote sensing from satellite platforms because of both their proximity to land (radar interference) and typically small horizontal scales (< 50km) of upwelling processes. Comparisons are performed on the gradient of sea surface temperature (SST) fields derived from multiple sources: 1) the 0.25 degree resolution National Climatic Data Center (NCDC) Optimally Interpolated AVHRR+in-situ or AVHRR_OI, data set. 2) the 1km resolution Multi-scale Ultra-high Resolution (MUR) gridded SST data set, 3) the 0.25 degree resolution SST derived from the WindSat microwave sensor, 4) a 2km version of the Estimating the Circulation and Climate of the Ocean Model (HECCO2). Temporal and spatial correlations between HECCO2 and MUR, as well as between HECCO2 and NCDC, are examined through the dominant singular vectors (eigenmodes) of the covariance matrix for each pair of data sets. In both cases the first mode of covariability accounts for over 90% of the total variance. A simple technique based on SST gradients is then applied to the first mode to determine the upwelling scales based on HECCO2, MUR, and NCDC. Longitudinal sections at 8S, 20S, and 30S indicate that the upwelling scale decreases between 8S and 20S. At 20S the first mode of covariability between MUR and HECCO2 indicate an upwelling scale between 25 and 50km. Results are consistent when compared with chlorophyll-a data from MODIS-Aqua. Such upwelling scales are not seen in the WindSat data and reduced in the NCDC data. A reduction of the upwelling scale by a factor 0.2 between 8S and 20S is consistent with a dependence on the Coriolis parameter. A major conclusion of the work is that magnitudes of SST gradient and upwelling scales derived from MUR are consistent with those of the HECCO2 for the test period of October-November 2011. Additionally, it is shown that to resolve upwelling scales near the coast high resolution infrared data must be used in the analysis. Microwave derived SSTs, such as those from WindSat are of limited value when upwelling scales are less then 50km.

A theoretical study of topographic effects on coastal upwelling and cross-shore exchange

NASA Astrophysics Data System (ADS)

Song, Y. Tony; Chao, Yi

The effects of topographic variations on coastal upwelling and cross-shore exchange are examined with a theoretical, continuously stratified, three-dimensional coastal ocean model. The model takes into account topographic variations in both alongshore and cross-shore directions and allows analytical solutions with an Ekman surface layer that faithfully represents the physical nature of the coastal upwelling system. Theoretical solutions with any analytical form of alongshore-varying topography can be solved based on the perturbation method of Killworth [J. Phys. Oceanogr. 8 (1978) 188]. Analyses of the model solutions lead to the following conclusions: The variation of upwelling fronts and currents is shown to be caused by the combined effect of topography and stratification. Topographic variation causes uneven upwelling distribution and leads to density variation, which results in a varying horizontal pressure gradient field that causes the meandering currents. The variation index is dependent upon a bilinear function of their physical parameters--the ratio of the topographic variation depth to the total depth and Burger's number of stratification. Cross-shore slope is found to play a role in maintaining the meandering structure of the alongshore currents. The anticyclonic circulations can further induce downwelling on the offshore side of the current, while the cyclonic circulations enhance upwelling and form upwelling centers on the inshore side of the current. Alongshore topography does not change the total upwelled water, i.e., the total Ekman pumping is conserved. However, it increases cross-exchange of water masses by transporting inshore (offshore) water near topographic features far offshore (inshore) from the mean position of the front. The applicability and limitations of the theory are also discussed.

Growth and production of the copepod community in the southern area of the Humboldt Current System

NASA Astrophysics Data System (ADS)

Escribano, R.; Bustos-Ríos, E.; Hidalgo, P.; Morales, C. E.

2015-02-01

Zooplankton production is a critical issue for understanding marine ecosystem structure and dynamics, however, its time-space variations are mostly unknown in most systems. In this study, estimates of copepod growth and production (CP) in the coastal upwelling and coastal transition zones off central-southern Chile (∼35-37° S) were obtained from annual cycles during a 3 year time series (2004, 2005, and 2006) at a fixed shelf station and from spring-summer surveys during the same years. C-specific growth rates (g) varied extensively among species and under variable environmental conditions; however, g values were not correlated to either near surface temperature or copepod size. Copepod biomass (CB) and CP were higher within the coastal upwelling zone (<50 km) and both decreased substantially from 2004 to 2006. Annual CP ranged between 24 and 52 g C m-2 year-1 with a~mean annual P/B ratio of 2.7. We estimated that CP could consume up to 60% of the annual primary production (PP) in the upwelling zone but most of the time is around 8%. Interannual changes in CB and CP values were associated with changes in the copepod community structure, the dominance of large-sized forms replaced by small-sized species from 2004 to 2006. This change was accompanied by more persistent and time extended upwelling during the same seasonal period. Extended upwelling may have caused large losses of CB from the upwelling zone due to an increase in offshore advection of coastal plankton. On a larger scale, these results suggest that climate-related impacts of increasing wind-driven upwelling in coastal upwelling systems may generate a negative trend in zooplankton biomass.

Holocene variability in the intensity of wind-gap upwelling in the tropical eastern Pacific

USGS Publications Warehouse

Toth, Lauren T.; Aronson, Richard B.; Cheng, Hai; Edwards, R. Lawrence

2015-01-01

Wind-driven upwelling in Pacific Panamá is a significant source of oceanographic variability in the tropical eastern Pacific. This upwelling system provides a critical teleconnection between the Atlantic and tropical Pacific that may impact climate variability on a global scale. Despite its importance to oceanographic circulation, ecology, and climate, little is known about the long-term stability of the Panamanian upwelling system or its interaction with climatic forcing on millennial time scales. Using a combination of radiocarbon and U-series dating of fossil corals collected in cores from five sites across Pacific Panamá, we reconstructed the local radiocarbon reservoir correction, ΔR, from ~6750 cal B.P. to present. Because the ΔR of shallow-water environments is elevated by upwelling, our data set represents a millennial-scale record of spatial and temporal variability of the Panamanian upwelling system. The general oceanographic gradient from relatively strong upwelling in the Gulf of Panamá to weak-to-absent upwelling in the Gulf of Chiriquí was present throughout our record; however, the intensity of upwelling in the Gulf of Panamá varied significantly through time. Our reconstructions suggest that upwelling in the Gulf of Panamá is weak at present; however, the middle Holocene was characterized by periods of enhanced upwelling, with the most intense upwelling occurring just after of a regional shutdown in the development of reefs at ~4100 cal B.P. Comparisons with regional climate proxies suggest that, whereas the Intertropical Convergence Zone is the primary control on modern upwelling in Pacific Panamá, the El Niño–Southern Oscillation drove the millennial-scale variability of upwelling during the Holocene.

Isotopic and enzymatic analyses of planktonic nitrogen utilisation in the vicinity of Cape Sines (Portugal) during weak upwelling activity

NASA Astrophysics Data System (ADS)

Slawyk, Gerd; Coste, Bernard; Collos, Yves; Rodier, Martine

1997-01-01

Using measurements of 15N uptake and activities of nitrate reductase and glutamine synthetase, the utilization of nitrogenous nutrients by microplankton in the Portuguese upwelling area was investigated. During this cruise the euphotic zone of coastal waters was in most cases bisected by a nitracline forming two layers. Total inorganic nitrogen uptake rates (NH 4+ + NO 3-) in the upper mixed and nitrate-impoverished layer ranged from 0.1 to 0.8 nM h -1 and were primarily supported by regenerated (ammonium) nitrogen (62-97%), whereas they varied between 0.9 and 10.4 nM h -1 in the deep nitrate-rich layer and were mainly driven by new (nitrate) nitrogen (52-82%). Depth profiles of Chl a-specific uptake rates for ammonium and nitrate paralleled those of absolute uptake rates, i.e. values of VNH 4+Chl were highest (up to 16.1 nmol μg -1 h -1) in nitrate-poor surface waters while values of VNO 3-Chl were maximum (up to 8.4 nmol μg -1 h -1)within the nitracline. This latter vertical ordering of planktonic nitrogen nutrition was consistent with an aged upwelling situation. However, applying several indices of cell metabolism and nutritional status, such as 15N uptake/enzyme activity, surge uptake internally controlled uptake, and V maxChl/K t ratios, we were able to demonstrate that the phytoplankton assemblages inhabiting the nutrient-impoverished upper layer still bore the signature of physically mediated nitrogen (nitrate) supply generated by active upwelling that had occurred during the week before our visit to the area. This signature was the most evident in samples from the station furthest inshore and faded with distance from shore as a result of the deepening of the nitrate isopleths (weakening of upwelling activity), which showed the same offshore trend. The appearance of nitrate-rich waters at the surface, after a strong pulse of upwelling favourable winds just before the end of the cruise, led to a five-fold increase in average (over the euphotic zone) absolute and Chl a-specific nitrate uptake rates (10.4 nM h -1, 7.5 nmol μ -1 h -1) compared to the mean rates during weak upwelling (1.7 nM h -1, 1.5 nmol μ -1 h -1). From a comparison with the neighbouring Moroccan upwelling, it is assumed that new production in the Portuguese upwelling averages 50 nM h -1. Thus, this upwelling would rank with the northwest African upwelling system off Cape Blanc or with the Californian upwelling at Point Conception for the capacity of new production, but seems to be much less efficient (seven-fold) than the highly permanent Peru upwelling.

A Lagrangian description of motion in Northern California coastal transition filaments

NASA Astrophysics Data System (ADS)

Paduan, Jeffrey D.; Niiler, Pearn P.

1990-10-01

Lagrangian drifters deployed during May 1987 as part of the Coastal Transition Zone experiment were used to examine the motion in cold-water features seen in satellite AVHRR imagery. The drifters were drogued at 15 m depth and had temperature sensors at 0 m, 12 m, and 18 m. Drogue positions were obtained via service ARGOS at an average of 8 times per day. A cluster of nine drifters was deployed on May 18 near the base of a cold-water feature off Pt. Reyes. Drifter trajectories confirm the presence of strong (> 50 cm s-1) currents along the axis of the feature. Six of the drifters moved northward following a cyclonic circulation pattern between the Pt. Reyes jet and another feature originating near Pt. Arena. The remaining three drifters, together with three more deployed on May 20, moved offshore in the positive vorticity portion of the Reyes jet. Cluster analysis of the northern tracks indicates large convergence (˜0.5f;), but because relative vorticity during the same few-day period is found to be constant (˜-0.2f), a simple vorticity balance does not emerge. This is attributed to insufficient resolution of divergence of the water parcel by the small number in the cluster. Drifters reside on the negative vorticity side of the jet while the flow is upwind but on the positive vorticity side while the flow is downwind. Such behavior is consistent with the convergence or divergence patterns expected when along-jet winds blow over such strong and narrow ocean currents producing significant advection of relative vorticity. Temperature-salinity data from CTD surveys during the experiment show how the jets that were revealed in both the imagery and the drifter trajectories were advecting different water masses. In the nearshore area where the drifters were deployed a column of cold and salty water had upwelled about 80 m since leaving the source region far offshore. Within the offshore extension of the jets as traced by the drifters, this same water is found about 20 m deeper than it is in the nearshore area. We thus observe that cold filaments seen in AVHRR transport upwelled water offshore through the coastal transition zone. That water subducts in the offshore extension of the filaments. Analysis of the high-frequency motion from a cluster of five drifters in the Reyes jet shows a multitude of mixing scales. For periods shorter than a day, the cluster shows coherent oscillations of tidal/inertial period whose motions lead to excursions on the order of 2 to 4 km. This suggests that motions on these scales are organized and not random or turbulent. Conversely, motions at scales of 1 km and less appear turbulent. Over longer time periods (several days), the particles exchange places over the cross-jet scale of the feature (10 to 20 km).

On vertical advection truncation errors in terrain-following numerical models: Comparison to a laboratory model for upwelling over submarine canyons

NASA Astrophysics Data System (ADS)

Allen, S. E.; Dinniman, M. S.; Klinck, J. M.; Gorby, D. D.; Hewett, A. J.; Hickey, B. M.

2003-01-01

Submarine canyons which indent the continental shelf are frequently regions of steep (up to 45°), three-dimensional topography. Recent observations have delineated the flow over several submarine canyons during 2-4 day long upwelling episodes. Thus upwelling episodes over submarine canyons provide an excellent flow regime for evaluating numerical and physical models. Here we compare a physical and numerical model simulation of an upwelling event over a simplified submarine canyon. The numerical model being evaluated is a version of the S-Coordinate Rutgers University Model (SCRUM). Careful matching between the models is necessary for a stringent comparison. Results show a poor comparison for the homogeneous case due to nonhydrostatic effects in the laboratory model. Results for the stratified case are better but show a systematic difference between the numerical results and laboratory results. This difference is shown not to be due to nonhydrostatic effects. Rather, the difference is due to truncation errors in the calculation of the vertical advection of density in the numerical model. The calculation is inaccurate due to the terrain-following coordinates combined with a strong vertical gradient in density, vertical shear in the horizontal velocity and topography with strong curvature.

The relationship between Arabian Sea upwelling and Indian monsoon revisited

NASA Astrophysics Data System (ADS)

Yi, X.; Hünicke, B.; Tim, N.; Zorita, E.

2015-11-01

Studies based on upwelling indices (sediment records, sea-surface temperature and wind) suggest that upwelling along the western coast of Arabian Sea is strongly affected by the Indian summer monsoon (ISM). In order to examine this relationship directly, we employ the vertical water mass transport produced by the eddy-resolving global ocean simulation STORM driven by meteorological reanalysis over the last 61 years. With its very high spatial resolution (10 km), STORM allows us to identify characteristics of the upwelling system. We analyze the co-variability between upwelling and meteorological and oceanic variables from 1950 to 2010. The analyses reveal high interannual correlations between coastal upwelling and along-shore wind-stress (r=0.73) as well as with sea-surface temperature (r0.83). However, the correlation between the upwelling and the ISM is small and other factors might contribute to the upwelling variability. In addition, no long-term trend is detected in our modeled upwelling time series.

Three-dimensional structure of a swarm of the salp Thalia democratica within a cold-core eddy off southeast Australia

NASA Astrophysics Data System (ADS)

Everett, J. D.; Baird, M. E.; Suthers, I. M.

2011-12-01

Swarms of the salp Thalia democratica periodically occur off southeast Australia following the austral spring bloom of phytoplankton. In October 2008 a filament of upwelled water was advected south by the adjacent East Australian Current and formed a 30 km diameter cold-core eddy (CCE). The three-dimensional structure of a subsurface swarm of T. democratica within the eddy was examined using both oblique and vertical hauls and an optical plankton counter (OPC) deployed on a towed body. The CCE displayed distinct uplift of the nutricline and elevated fluorescence. Net samples show the zooplankton community was dominated by T. democratica, comprising 73%-88% of zooplankton abundance. The size distribution of T. democratica measured from net samples was 0.5-5 mm and was used to interpret the OPC transects, which showed the swarm formed a 15 km diameter disc located 20-40 m deep in the center of the eddy. The maximum salp abundance was in the pycnocline and coincided with the subsurface fluorescence maximum. The mean abundance of T. democratica size particles within the disc was 5003 individuals m-3 (ind. m-3), contrasted with only 604 ind. m-3 at the outer edge of the eddy. The vertically concentrated and horizontally constrained disc-shaped salp swarm occurred at the interface of salp-bearing inner shelf water and nutrient-rich upwelled water in a CCE. The physical processes that formed the CCE on the inshore edge of the western boundary current led to the largest density of salps recorded.

Coastal upwelling seasonality and variability of temperature and chlorophyll in a small coastal embayment

NASA Astrophysics Data System (ADS)

Walter, Ryan K.; Armenta, Kevin J.; Shearer, Brandon; Robbins, Ian; Steinbeck, John

2018-02-01

While the seasonality of wind-driven coastal upwelling in eastern boundary upwelling systems has long been established, many studies describe two distinct seasons (upwelling and non-upwelling), a generalized framework that does not capture details relevant to marine ecosystems. In this contribution, we present a more detailed description of the annual cycle and upwelling seasonality for an understudied location along the central California coast. Using both the mean monthly upwelling favorable wind stress and the monthly standard deviation, we define the following seasons (contiguous months) and a transitional period (non-contiguous months): "Winter Storms" season (Dec-Jan-Feb), "Upwelling Transition" period (Mar and Jun), "Peak Upwelling" season (Apr-May), "Upwelling Relaxation" season (Jul-Aug-Sep), and "Winter Transition" season (Oct-Nov). In order to describe the oceanic response to this upwelling wind seasonality, we take advantage of nearly a decade of full water-column measurements of temperature and chlorophyll made using an automated profiling system at the end of the California Polytechnic State University Pier in San Luis Obispo Bay, a small ( 2 km wide near study site) and shallow ( 10 m average bay depth) coastal embayment. Variability and average-year patterns are described inside the bay during the various upwelling seasons. Moreover, the role of the local coastline orientation and topography on bay dynamics is also assessed using long-term measurements collected outside of the bay. The formation of a seasonally variable upwelling shadow system and potential nearshore retention zone is discussed. The observations presented provide a framework on which to study interannual changes to the average-year seasonal cycle, assess the contribution of higher-frequency features to nearshore variability, and better predict dynamically and ecologically important events.

On the Hiatus in the Acceleration of Tropical Upwelling Since the Beginning of the 21st Century

NASA Technical Reports Server (NTRS)

Aschmann, J.; Burrows, J. P.; Gebhardt, C.; Rozanov, A.; Hommel, R.; Weber, M.; Thompson, A. M.

2014-01-01

Chemistry-climate models predict an acceleration of the upwelling branch of the Brewer-Dobson circulation as a consequence of increasing global surface temperatures, resulting from elevated levels of atmospheric greenhouse gases. The observed decrease of ozone in the tropical lower stratosphere during the last decades of the 20th century is consistent with the anticipated acceleration of upwelling. However, more recent satellite observations of ozone reveal that this decrease has unexpectedly stopped in the first decade of the 21st century, challenging the implicit assumption of a continuous acceleration of tropical upwelling. In this study we use three decades of chemistry transport-model simulations (1980-2013) to investigate this phenomenon and resolve this apparent contradiction. Our model reproduces the observed tropical lower stratosphere ozone record, showing a significant decrease in the early period followed by a statistically robust trend-change after 2002. We demonstrate that this trend-change is correlated with corresponding changes in the vertical transport and conclude that a hiatus in the acceleration of tropical upwelling occurred during the last decade.

Geographical gradients in selection can reveal genetic constraints for evolutionary responses to ocean acidification.

PubMed

Gaitán-Espitia, Juan Diego; Marshall, Dustin; Dupont, Sam; Bacigalupe, Leonardo D; Bodrossy, Levente; Hobday, Alistair J

2017-02-01

Geographical gradients in selection can shape different genetic architectures in natural populations, reflecting potential genetic constraints for adaptive evolution under climate change. Investigation of natural pH/pCO 2 variation in upwelling regions reveals different spatio-temporal patterns of natural selection, generating genetic and phenotypic clines in populations, and potentially leading to local adaptation, relevant to understanding effects of ocean acidification (OA). Strong directional selection, associated with intense and continuous upwellings, may have depleted genetic variation in populations within these upwelling regions, favouring increased tolerances to low pH but with an associated cost in other traits. In contrast, diversifying or weak directional selection in populations with seasonal upwellings or outside major upwelling regions may have resulted in higher genetic variances and the lack of genetic correlations among traits. Testing this hypothesis in geographical regions with similar environmental conditions to those predicted under climate change will build insights into how selection may act in the future and how populations may respond to stressors such as OA. © 2017 The Author(s).

Global climate change and intensification of coastal ocean upwelling.

PubMed

Bakun, A

1990-01-12

A mechanism exists whereby global greenhouse warning could, by intensifying the alongshore wind stress on the ocean surface, lead to acceleration of coastal upwelling. Evidence from several different regions suggests that the major coastal upwelling systems of the world have been growing in upwelling intensity as greenhouse gases have accumulated in the earth's atmosphere. Thus the cool foggy summer conditions that typify the coastlands of northern California and other similar upwelling regions might, under global warming, become even more pronounced. Effects of enhanced upwelling on the marine ecosystem are uncertain but potentially dramatic.

Variability of Phytoplankton Size Structure in Response to Changes in Coastal Upwelling Intensity in the Southwestern East Sea

NASA Astrophysics Data System (ADS)

Shin, Jung-Wook; Park, Jinku; Choi, Jang-Geun; Jo, Young-Heon; Kang, Jae Joong; Joo, HuiTae; Lee, Sang Heon

2017-12-01

The aim of this study was to examine the size structure of phytoplankton under varying coastal upwelling intensities and to determine the resulting primary productivity in the southwestern East Sea. Samples of phytoplankton assemblages were collected on five occasions from the Hupo Bank, off the east coast of Korea, during 2012-2013. Because two major surface currents have a large effect on water mass transport in this region, we first performed a Backward Particle Tracking Experiment (BPTE) to determine the coastal sea from which the collected samples originated according to advection time of BPTE particles, following which we used upwelling age (UA) to determine the intensity of coastal upwelling in the region of origin for each sample. Only samples that were affected by coastal upwelling in the region of origin were included in subsequent analyses. We found that as UA increased, there was a decreasing trend in the concentration of picophytoplankton, and increasing trends in the concentration of nanophytoplankton and microphytoplankton. We also examined the relationship between the size structure of phytoplankton and primary productivity in the Ulleung Basin (UB), which has experienced significant variation over the past decade. We found that primary productivity in UB was closely related to the strength of the southerly wind, which is the most important mechanism for coastal upwelling in the southwestern East Sea. Thus, the size structure of phytoplankton is determined by the intensity of coastal upwelling, which is regulated by the southerly wind, and makes an important contribution to primary productivity.

Analysis of longwave radiation for the Earth-atmosphere system

NASA Technical Reports Server (NTRS)

Tiwari, S. N.; Venuru, C. S.; Subramanian, S. V.

1983-01-01

Accurate radiative transfer models are used to determine the upwelling atmospheric radiance and net radiative flux in the entire longwave spectral range. The validity of the quasi-random band model is established by comparing the results of this model with those of line-by-line formulations and with available theoretical and experimental results. Existing radiative transfer models and computer codes are modified to include various surface and atmospheric effects (surface reflection, nonequilibrium radiation, and cloud effects). The program is used to evaluate the radiative flux in clear atmosphere, provide sensitivity analysis of upwelling radiance in the presence of clouds, and determine the effects of various climatological parameters on the upwelling radiation and anisotropic function. Homogeneous and nonhomogeneous gas emissivities can also be evaluated under different conditions.

Upwelling Response to Hurricane Isaac in Geostrophic Oceanic Vortices

NASA Astrophysics Data System (ADS)

Jaimes, B.; Shay, L. K.; Brewster, J. K.; Schuster, R.

2013-05-01

As a tropical cyclone (TC) moves over the ocean, the cyclonic curl of the wind stress produces a region of upwelling waters under the TC center that is compensated by downwelling waters at regions outside the center. Direct measurements conducted during hurricane Rita and recent numerical studies indicate that this is not necessarily the case when TCs move over geostrophic oceanic features, where its background relative vorticity impacts wind-driven horizontal current divergence and the upwelling velocity. Modulation of the upwelling response in these energetic oceanic regimes impacts vertical mixing across the oceanic mixed layer base, air-sea fluxes into the atmosphere, and ultimately storm intensity. As part of NOAA Intensity Forecasting Experiment, an experiment was conducted during the passage of TC Isaac over the energetic geostrophic eddy field in the Gulf of Mexico in August 2012. Expendable bathythermographs, current profilers, and conductivity-temperature-depth probes were deployed in Isaac from NOAA WP-3D aircraft during four in-storm flights to measure oceanic variability and its impact on TC-driven upwelling and surface fluxes of heat and momentum. During intensification to hurricane, the cyclonic curl of the wind stress of Isaac extended over a region of more than 300 km in diameter (4 to 5 times the radius of maximum winds). Isaac's center moved over a cold cyclonic feature, while its right and left sides moved over warm anticyclones. Contrasting upwelling and downwelling regimes developed inside the region of cyclonic curl of the wind stress. Both positive (upwelling) and negative (downwelling) vertical displacements of 40 and 60 m, respectively, were measured inside the region of cyclonic curl of the wind stress, which are between 3 to 4 times larger than predicted vertical displacements for a quiescent ocean based on scaling arguments. Oceanic mixed layer (OML) currents of 0.2 to 0.7 m s-1 were measured, which are about 50% smaller than the expected velocity response under quiescent oceanic conditions. Although OML currents were measured inside the core of cyclonic curl of the wind stress, their orientation is not consistent with horizontally divergent flows typically found in upwelling regimes under TC centers. Theoretical predictions that consider background relative vorticity effects on the upwelling response mimic the contrasting upwelling/downwelling regimes inside the region of cyclonic curl of the wind stress. These results point to an important modulation of the OML current and upwelling response by background oceanic flows, where the upwelling velocity is a function of the curl of wind-intensified pre-storm geostrophic currents, rather than just a function of the curl of the wind stress. Thus, properly initializing temperature and salinity fields in numerical models is needed to accurately represent these oceanic processes in coupled forecast models.

Submesoscale-selective compensation of fronts in a salinity-stratified ocean.

PubMed

Spiro Jaeger, Gualtiero; Mahadevan, Amala

2018-02-01

Salinity, rather than temperature, is the leading influence on density in some regions of the world's upper oceans. In the Bay of Bengal, heavy monsoonal rains and runoff generate strong salinity gradients that define density fronts and stratification in the upper ~50 m. Ship-based observations made in winter reveal that fronts exist over a wide range of length scales, but at O(1)-km scales, horizontal salinity gradients are compensated by temperature to alleviate about half the cross-front density gradient. Using a process study ocean model, we show that scale-selective compensation occurs because of surface cooling. Submesoscale instabilities cause density fronts to slump, enhancing stratification along-front. Specifically for salinity fronts, the surface mixed layer (SML) shoals on the less saline side, correlating sea surface salinity (SSS) with SML depth at O(1)-km scales. When losing heat to the atmosphere, the shallower and less saline SML experiences a larger drop in temperature compared to the adjacent deeper SML on the salty side of the front, thus correlating sea surface temperature (SST) with SSS at the submesoscale. This compensation of submesoscale fronts can diminish their strength and thwart the forward cascade of energy to smaller scales. During winter, salinity fronts that are dynamically submesoscale experience larger temperature drops, appearing in satellite-derived SST as cold filaments. In freshwater-influenced regions, cold filaments can mark surface-trapped layers insulated from deeper nutrient-rich waters, unlike in other regions, where they indicate upwelling of nutrient-rich water and enhanced surface biological productivity.

Hot-spots of primary productivity: An Alternative interpretation to Conventional upwelling models

NASA Astrophysics Data System (ADS)

van Ruth, Paul D.; Ganf, George G.; Ward, Tim M.

2010-12-01

The eastern Great Australian Bight (EGAB) forms part of the Southern and Indian Oceans and is an area of high ecological and economic importance. Although it supports a commercial fishery, quantitative estimates of the primary productivity underlying this industry are open to debate. Estimates range from <100 mg C m -2 day -1 to > 500 mg C m -2 day -1. Part of this variation may be due to the unique upwelling circulation of shelf waters in summer/autumn (November-April), which shares some similarities with highly productive eastern boundary current upwelling systems, but differs due to the influence of a northern boundary current, the Flinders current, and a wide continental shelf. This study examines spatial variations in primary productivity in the EGAB during the upwelling seasons of 2005 and 2006. Daily integral productivity calculated using the vertically generalised production model (VGPM) showed a high degree of spatial variation. Productivity was low (<800 mg C m -2 day -1) in offshore central and western regions of the EGAB. High productivities (1600-3900 mg C m -2 day -1) were restricted to hotspots in the east that were influenced by the upwelled water mass. There was a strong correlation between the depth of the euphotic zone and the depth of the mixed layer that suggested that ˜50% of the euphotic zone lay below the mixed layer depth. As a result, high rates of primary productivity did not require upwelled water to reach the surface. A significant proportion of total productivity in the euphotic zone (57% in 2005 and 65% in 2006) occurred in the upwelled water mass below the surface mixed layer. This result has implications for daily integral productivities modelled with the VGPM, which uses surface measures of phytoplankton biomass to calculate productivity. Macro-nutrient concentrations could not be used to explain the difference in the low and high productivities (silica > 1 μmol L -1, nitrate/nitrite > 0.4 μmol L -1, phosphate > 0.1 μmol L -1). Mixing patterns or micro-nutrient concentrations are possible explanations for spatial variations in primary productivity in the EGAB. On a global scale, daily rates of primary productivity of the EGAB lie between the highly productive eastern boundary current upwelling systems, and less productive coastal regions of western and south eastern Australia, and the oligotrophic ocean. However, daily productivity rates in the upwelling hotspots of the EGAB rival productivities in Benguela and Humboldt currents.

Recent decadal trends in Iberian water vapour: GPS analysis and WRF process study

NASA Astrophysics Data System (ADS)

Miranda, Pedro M. A.; Nogueira, Miguel; Semedo, Alvaro; Benevides, Pedro; Catalao, Joao; Costa, Vera

2016-04-01

A 24-year simulation of the recent Iberian climate, using the WRF model at 9km resolution forced by ERA-Interim reanalysis (1989-2012), is analysed for the decadal evolution of the upwelling forcing coastal wind and for column integrated Precipitable water vapour (PWV). Results indicate that, unlike what was found by Bakun et al. (2009) for the Peruvian region, a statistically significant trend in the upwelling favourable (northerly) wind has been accompanied by a corresponding decrease in PWV, not only inland but also over the coastal waters. Such increase is consistent with a reinforced northerly coastal jet in the maritime boundary layer contributing to atmospheric Ekman pumping of dry continental air into the coastal region. Diagnostics of the prevalence of the Iberian thermal low following Hoinka and Castro (2003) also show a positive trend in its frequency during an extended summer period (April to September). These results are consistent with recent studies indicating an upward trend in the frequency of upwelling in SW Iberia (Alves and Miranda 2013), and may be relevant for climate change applications as an increase in coastal upwelling (Miranda et al 2013) may lead to substantial regional impacts in the subtropics. The same analysis with ERA-Interim reanalysis data, which was used to force the WRF simulations, does not reveal the same signal in PWV, and indeed correlates poorly with the GPS observations, indicating that the data assimilation process makes the water vapour data in reanalysis unusable for climate change purposes. The good correlation between the WRF simulated data and GPS observations allow for a detailed analysis of the processes involved in the evolution of the PWV field. Akcnowledgements: Study done within FCT Grant RECI/GEO-MET/0380/2012, financially supported by FCT Grant UID/ GEO/50019/2013-IDL Alves JMR, Miranda PMA (2013) Variability of Iberian upwelling implied by ERA-40 and ERA-Interim reanalyses, Tellus A 2013, http://dx.doi.org/10.3402/tellusa.v65i0.19245. Bakun et al (2010) Greenhouse gas, upwelling-favorable winds, and the future of coastal ocean upwelling ecosystems, Global Change Biology, doi: 10.1111/j.1365-2486.2009.02094.x Hoinka KP, Castro M (2003) The Iberian Peninsula thermal low. QJRMS, 129, 1491- 1511, doi: 10.1256/qj.01.189. Miranda et al (2013) Climate change and upwelling: response of Iberian upwelling to atmospheric forcing in a regional climate scenario. Climate Dynamics, doi: 10.1007/s00382-012-1442-9.

Evaluation of upwelling infrared radiance from earth's atmosphere

NASA Technical Reports Server (NTRS)

Gupta, S. K.; Tiwari, S. N.

1975-01-01

Basic equations for calculating the upwelling atmospheric radiation are presented which account for various sources of radiation coming out at the top of the atmosphere. The theoretical formulation of the transmittance models (line-by-line and quasi-random band model) and the computational procedures used for the evaluation of the transmittance and radiance are discussed in detail. By employing the Lorentz line-by-line and quasi-random computer programs, model calculations were made to determine the upwelling radiance and signal change in the wave number interval of CO fundamental band. These results are useful in determining the effects of different interfering molecules, water vapor profiles, ground temperatures, and ground emittances on the upwelling radiance and signal change. This information is of vital importance in establishing the feasibility of measuring the concentrations of pollutants in the atmosphere from a gas filter correlation instrument flown on an aircraft or mounted on a satellite.

Bathymetric analysis of in-water upwelling-radiance data

NASA Astrophysics Data System (ADS)

Fay, Temple H.; Miller, H. V.; Clark, R. K.

1990-09-01

In June 1988, the Naval Ocean Research and Development Activity (NORDA) collected some "in-water" data using its Towed Underwater Pumping System (TUPS) in the near-shore waters off St. Andrews State Park, Shell Island, Florida. These in situ data include latitude; longitude; depth in meters; narrow-band upwelling at 465 nm, 507 nm, and 532 nm; broad-band downwelling collected at the surface; temperature; salinity; atid transmissivity. In this paper, we investigate the relationship between depth and the normalized upwelling irradiance (upwelling divided by downwelling) in the three bands. Algorithms used to calculate water depth from remotely sensed airborne and satellite multispectral data are applied to the TUPS data and results compared. The TEJPS data have the advantage over most aircraft- and satellite-collected data because they were collected over an essentially uniform bottom type (smooth sandy bottom with steady slope) and have no atmospheric contamination. A new algorithm for depth calculation is proposed.

A simple predictive model for the structure of the oceanic pycnocline

PubMed

Gnanadesikan

1999-03-26

A simple theory for the large-scale oceanic circulation is developed, relating pycnocline depth, Northern Hemisphere sinking, and low-latitude upwelling to pycnocline diffusivity and Southern Ocean winds and eddies. The results show that Southern Ocean processes help maintain the global ocean structure and that pycnocline diffusion controls low-latitude upwelling.

Wind modulation of upwelling at the shelf-break front off Patagonia: Observational evidence

NASA Astrophysics Data System (ADS)

Carranza, M. M.; Gille, S. T.; Piola, A. R.; Charo, M.; Romero, S. I.

2017-03-01

The South-Atlantic Patagonian shelf is the largest chlorophyll-a (Chl-a) hot spot in Southern Ocean color images. While a persistent 1500 km long band of high Chl-a along the shelf-break front (SBF) is indicative of upwelling, the mechanisms that drive it are not entirely known. Along-front wind oscillations can enhance upwelling and provide a nutrient pumping mechanism at shelf-break fronts of western boundary currents. Here we assess wind-induced upwelling at the SBF off Patagonia from daily satellite Chl-a and winds, historical hydrographic observations, cross-shelf Chl-a fluorescence transects from two cruises, and in situ winds and water column structure from a mooring site. Satellite Chl-a composites segregated by along-front wind direction indicate that surface Chl-a is enhanced at the SBF with southerly winds and suppressed with northerly winds. Northerly winds also result in enhanced Chl-a further offshore (˜25-50 km). Synoptic transects as well as mean hydrographic sections segregated by along-front winds show isopycnals tilted upward for southerly winds. Spring observations from the mooring also suggest that southerly winds destratify the water column and northerly winds restratify, in agreement with Ekman transport interacting with the front. Moreover, changes in water column temperature lag along-front wind forcing by 2-4 days. Our results suggest that oscillations in along-front winds, on timescales typical of atmospheric storms (2-10 days), can significantly modulate the upwelling and Chl-a concentrations at the SBF off Patagonia, revealing the importance of wind-induced upwelling for shelf-slope exchange at shelf-break fronts of western boundary currents.

The NAO Influence on the Early to Mid-Holocene North Atlantic Coastal Upwelling

NASA Astrophysics Data System (ADS)

Hernandez, A.; Cachão, M.; Sousa, P.; Trigo, R. M.; Freitas, M. C.

2017-12-01

Coastal upwelling regions yield some of the oceanic most productive ecosystems, being crucial for the worldwide social and economic development. Most upwelling systems, emerging cold nutrient-rich deep waters, are located in the eastern boundaries of the Atlantic and Pacific basins, and are driven by meridional wind fields parallel to the coastal shore. These winds are associated with the subsiding branch of the large-scale Anticyclonic high pressure systems that dominate the subtropical ocean basins, and therefore can be displaced or intensified within the context of past and future climate changes. However, the role of the current global warming influencing the coastal upwelling is, as yet, unclear. Therefore it is essential to derive a long-term perspective, beyond the era of instrumental measurements, to detect similar warm periods in the past that have triggered changes in the upwelling patterns. In this work, the upwelling dynamics in the Iberian North Atlantic margin during the early and mid-Holocene is reconstructed, using calcareous nannofossils from a decadally resolved estuarine sediment core located in southwestern Portugal. Results suggest that the coastal dynamics reflects changes in winds direction likely related to shifts in the NAO-like conditions. Furthermore, the reconstructed centennial-scale variations in the upwelling are synchronous with changes in solar irradiance, a major external forcing factor of the climate system that is known to exert influence in atmospheric circulation patterns. In addition, these proxy-based data interpretations are in agreement with wind field and solar irradiance simulation modelling for the mid-Holocene. Therefore, the conclusion that the solar activity via the NAO modulation controlled the North Atlantic upwelling of western Iberia during the early and mid-Holocene at decadal to centennial timescales can be derived. The financial support for attending this meeting was possible through FCT project UID/GEO/50019/2013 - Instituto Dom Luiz

High Resolution Upwelling Cycles in Guaymas and Cariaco Basins over the late Holocene: Coupling Between the Western Atlantic and Eastern Pacific?

NASA Astrophysics Data System (ADS)

Goni, M. A.

2005-12-01

The recent past history of sea surface temperature (SST) conditions in two wind-dominated upwelling systems, Guaymas Basin (Gulf of California) and Cariaco Basin (Venezuela) was investigated using the alkenone-based UK'37 index. Both of these systems undergo marked seasonal SST changes of 4-10 degrees C, which are associated with wind-driven upwelling and thermal stratification cycles. Both Guaymas and Cariaco Basins are also characterized by suboxic to anoxic bottom waters that result in undisturbed, varved sediments. Confirmation that the seasonal SST trends are accurately incorporated into the UK'37 ratios of sinking particles was achieved using sediment trap samples. Analyses of sediment cores from Guaymas and Cariaco Basins yielded high-resolution (decadal) records of SST conditions in the overlying water column from 1700 to 2000 AD. The trends in the UK'37 index revealed general increases in the SST at both sites over that last 300 years associated with the end of the little ice age. However, in addition to this long-term trend, higher-frequency (~ 50 years) changes in SST that ranged from 1-3 degrees C were observed. We speculate that these decadal trends in SST reflect variations in the intensity of wind-driven upwelling at these sites. Most interestingly, there is a marked contrast in the timing of the SST values between Guaymas and Cariaco so that periods of enhanced upwelling in Guyamas Basin are characterized by decreased upwelling in Cariaco Basin (and vice versa). We propose that these contrasting records reflect differences in the response of wind-driven upwelling to changes in the position of the Intertropical Convergence Zone over the western Atlantic and the subtropical High over the eastern Pacific. The connection between these two upwelling systems and its significance for paleoreconstruction studies will be explored further.

The relationship between Arabian Sea upwelling and Indian Monsoon revisited in a high resolution ocean simulation

NASA Astrophysics Data System (ADS)

Yi, Xing; Hünicke, Birgit; Tim, Nele; Zorita, Eduardo

2018-01-01

Studies based on sediment records, sea-surface temperature and wind suggest that upwelling along the western coast of Arabian Sea is strongly affected by the Indian summer Monsoon. We examine this relationship directly in an eddy-resolving global ocean simulation STORM driven by atmospheric reanalysis over the last 61 years. With its very high spatial resolution (10 km), STORM allows us to identify characteristics of the upwelling system. We analyse the co-variability between upwelling and meteorological and oceanic variables from 1950 to 2010. The analysis reveals high interannual correlations between coastal upwelling and along-shore wind-stress (r = 0.73) as well as with sea-surface temperature (r = -0.83). However, the correlation between the upwelling and the Monsoon is small. We find an atmospheric circulation pattern different from the one that drives the Monsoon as the main modulator of the upwelling variability. In spite of this, the patterns of temperature anomalies that are either linked to Arabian Sea upwelling or to the Monsoon are spatially quite similar, although the physical mechanisms of these links are different. In addition, no long-term trend is detected in our modelled upwelling in the Arabian Sea.

Benguela upwelling response during intervals of global climate transition

NASA Astrophysics Data System (ADS)

Shrivastava, Ankush; Sinha, Devesh; Singh, Ashutosh; Ramesh, Rengaswamy

2017-04-01

In the present study sedimentary records from the southeast Atlantic ocean were used for reconstructing the variability of Benguela upwelling system as well as the Interoceanic exchange between Indian and Atlantic Oceans during the critical intervals. Planktic foraminiferal assemblage data revealed diminished upwelling in the Benguela upwelling region during the Pliocene warm interval (3.7-3 Ma) which is in contrast to the model reconstructions by Wang et al., 2015 proposing intensification of upwelling with projected future warming. Gradual intensification of Benguela upwelling was interpreted during the Pliocene - Pleistocene transition (3-2.5 Ma). Enhanced Benguela upwelling during the Northern Hemisphere Glaciation supposed to have played a major role in the drawdown of atmospheric carbon dioxide after Pliocene warmth interval (3.7-3 Ma). Enhanced Benguela upwelling also occurred during Mid- Pleistocene transition (1-0.7 Ma). Reduced interoceanic exchange has been identified between Indian and Atlantic ocean during Northern Hemisphere glaciation (2.5- 2 Ma) and Mid-Pleistocene transition (1- 0.7 Ma). Equatorward migration of subtropical fronts during these two intervals was probably responsible for the reduced interoceanic exchange. Keywords: Pliocene-Pleistocene transition, Mid- Pleistocene transition, Benguela upwelling, Interoceanic exchange

Implications of Upwells as Hydrodynamic Jets in a Pulse Jet Mixed System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pease, Leonard F.; Bamberger, Judith A.; Minette, Michael J.

2015-08-01

This report evaluates the physics of the upwell flow in pulse jet mixed systems in the Hanford Tank Waste Treatment and Immobilization Plant (WTP). Although the initial downward flow and radial flow from pulse jet mixers (PJMs) has been analyzed in some detail, the upwells have received considerably less attention despite having significant implications for vessel mixing. Do the upwells behave like jets? How do the upwells scale? When will the central upwell breakthrough? What proportion of the vessel is blended by the upwells themselves? Indeed, how the physics of the central upwell is affected by multiple PJMs (e.g., sixmore » in the proposed mixing vessels), non-Newtonian rheology, and significant multicomponent solids loadings remain unexplored. The central upwell must satisfy several criteria to be considered a free jet. First, it must travel for several diameters in a nearly constant direction. Second, its velocity must decay with the inverse of elevation. Third, it should have an approximately Gaussian profile. Fourth, the influence of surface or body forces must be negligible. A combination of historical data in a 12.75 ft test vessel, newly analyzed data from the 8 ft test vessel, and conservation of momentum arguments derived specifically for PJM operating conditions demonstrate that the central upwell satisfies these criteria where vigorous breakthrough is achieved. An essential feature of scaling from one vessel to the next is the requirement that the underlying physics does not change adversely. One may have confidence in scaling if (1) correlations and formulas capture the relevant physics; (2) the underlying physics does not change from the conditions under which it was developed to the conditions of interest; (3) all factors relevant to scaling have been incorporated, including flow, material, and geometric considerations; and (4) the uncertainty in the relationships is sufficiently narrow to meet required specifications. Although the central upwell satisfies these criteria when vigorous breakthrough is achieved, not all available data follow the free jet profile for the central upwell, particularly at lower nozzle velocities. Alternative flow regimes are considered and new models for cloud height, “cavern height,” and the rate of jet penetration (jet celerity) are benchmarked against data to anchor scaling analyses. This analytical modeling effort to provide a technical basis for scaling PJM mixed vessels has significant implications for vessel mixing, because jet physics underlies “cavern” height, cloud height, and the volume of mixing considerations. A new four-parameter cloud height model compares favorably to experimental results. This model is predictive of breakthrough in 8 ft vessel tests with the two-part simulant. Analysis of the upwell in the presence of yield stresses finds evidence of expanding turbulent jets, confined turbulent jets, and confined laminar flows. For each, the critical elevation at which jet momentum depletes is predicted, which compare favorably to experimental cavern height data. Partially coupled momentum and energy balances suggest that these are limiting cases of a gradual transition from a turbulent expanding flow to a confined laminar flow. This analysis of the central upwell alone lays essential groundwork for complete analysis of mode three mixing (i.e., breakthrough with slow peripheral mixing). Consideration of jet celerity shows that the rate of jet penetration is a governing consideration in breakthrough to the surface. Estimates of the volume of mixing are presented. This analysis shows that flow along the vessel wall is sluggish such that the central upwell governs the volume of mixing. This analysis of the central upwell alone lays essential groundwork for complete analysis of mode three mixing and estimates of hydrogen release rates from first principles.« less

What drives the spatial variability of primary productivity and matter fluxes in the north-west African upwelling system? A modelling approach

NASA Astrophysics Data System (ADS)

Auger, Pierre-Amaël; Gorgues, Thomas; Machu, Eric; Aumont, Olivier; Brehmer, Patrice

2016-11-01

A comparative box analysis based on a multi-decadal physical-biogeochemical hindcast simulation (1980-2009) was conducted to characterize the drivers of the spatial distribution of phytoplankton biomass and production in the north-west (NW) African upwelling system. Alongshore geostrophic flow related to large-scale circulation patterns associated with the influence of coastal topography is suggested to modulate the coastal divergence, and then the response of nutrient upwelling to wind forcing. In our simulation, this translates into a coastal upwelling of nitrate being significant in all regions but the Cape Blanc (CB) area. However, upwelling is found to be the dominant supplier of nitrate only in the northern Saharan Bank (NSB) and the Senegalo-Mauritanian (SM) regions. Elsewhere, nitrate supply is dominated by meridional advection, especially off Cape Blanc. Phytoplankton displays a similar behaviour with a supply by lateral advection which equals the net coastal phytoplankton growth in all coastal regions except the Senegalo-Mauritanian area. Noticeably, in the Cape Blanc area, the net coastal phytoplankton growth is mostly sustained by high levels of regenerated production exceeding new production by more than twofold, which is in agreement with the locally weak input of nitrate by coastal upwelling. Further offshore, the distribution of nutrients and phytoplankton is explained by the coastal circulation. Indeed, in the northern part of our domain (i.e. Saharan Bank), the coastal circulation is mainly alongshore, resulting in low offshore lateral advection of nutrients and phytoplankton. Conversely, lateral advection transports coastal nutrients and phytoplankton towards offshore areas in the latitudinal band off the Senegalo-Mauritanian region. Moreover, this latter offshore region benefits from transient southern intrusions of nutrient-rich waters from the Guinean upwelling.

Upwelling-derived oceanographic conditions impact growth performance and growth-related gene expression in intertidal fish.

PubMed

Fuentes, Eduardo N; Zuloaga, Rodrigo; Almarza, Oscar; Mendez, Katterinne; Valdés, Juan Antonio; Molina, Alfredo; Pulgar, Jose

2017-12-01

Growth is one of the main biological processes in aquatic organisms that is affected by environmental fluctuations such as upwelling (characterized by food-rich waters). In fish, growth is directly related with skeletal muscle increase; which represents the largest tissue of body mass. However, the effects of upwelling on growth, at the physiological and molecular level, are unknown. This study used Girella laevifrons (one of the most abundant intertidal fish in Eastern South Pacific) as a biological model, considering animals from upwelling (U) and non-upwelling (NU) areas. Here, we evaluated the effect of nutritional composition and food availability on growth performance and expression of key growth-related genes (insulin-kike growth factor 1 (igf1) and myosin heavy-chain (myhc)) and atrophy-related genes (muscle ring-finger 1 (murf1), F-box only protein 32 (atrogin-1) and BCL2/adenovirus E1B 19kDa-interacting protein 3 (bnip3)). We reported that, among zones, U fish displayed higher growth performance in response to nutritional composition, specifically between protein- and fiber-rich diets (~1g). We also found in NU fish that atrophy-related genes were upregulated with fiber-rich diet and during fasting (~2-fold at minimum respect U). In conclusion, our results suggest that the growth potential of upwelling fish may be a consequence of differential muscle gene expression. Our data provide a preliminary approach contributing on how upwelling influence fish growth at the physiological and molecular levels. Future studies are required to gain further knowledge about molecular differences between U and NU animals, as well as the possible applications of this knowledge in the aquaculture industry. Copyright © 2017 Elsevier Inc. All rights reserved.

Dynamics of a "low-enrichment high-retention" upwelling center over the southern Senegal shelf

NASA Astrophysics Data System (ADS)

Ndoye, Siny; Capet, Xavier; Estrade, Philippe; Sow, Bamol; Machu, Eric; Brochier, Timothée.; Döring, Julian; Brehmer, Patrice

2017-05-01

Senegal is the southern tip of the Canary upwelling system. Its coastal ocean hosts an upwelling center which shapes sea surface temperatures between latitudes 12° and 15°N. Near this latter latitude, the Cape Verde headland and a sudden change in shelf cross-shore profile are major sources of heterogeneity in the southern Senegal upwelling sector (SSUS). SSUS dynamics is investigated by means of Regional Ocean Modeling System simulations. Configuration realism and resolution (Δx≈ 2 km) are sufficient to reproduce the SSUS frontal system. Our main focus is on the 3-D upwelling circulation which turns out to be profoundly different from 2-D theory: cold water injection onto the shelf and upwelling are strongly concentrated within a few tens of kilometers south of Cape Verde and largely arise from flow divergence in the alongshore direction; a significant fraction of the upwelled waters are retained nearshore over long distances while travelling southward under the influence of northerly winds. Another source of complexity, regional-scale alongshore pressure gradients, also contributes to the overall retention of upwelled waters over the shelf. Varying the degree of realism of atmospheric and oceanic forcings does not appreciably change these conclusions. This study sheds light on the dynamics and circulation underlying the recurrent sea surface temperature pattern observed during the upwelling season and offers new perspectives on the connections between the SSUS physical environment and its ecosystems. It also casts doubt on the validity of upwelling intensity estimations based on simple Ekman upwelling indices at such local scales.

A dynamic box model of bioactive elements in the southern Taiwan Strait

NASA Astrophysics Data System (ADS)

Hua-Sheng, Hong; Shao-Ling, Shang

1994-06-01

A dynamic box model was applied to study the characteristics of biogeochemical cycling of PO4-P, NO3-N, AOU, POC and PON in the southern Taiwan Strait region based on the field data of the “Minnan Taiwan Bank Fishing Ground Upwelling Ecosystem Study” during the period of Dec. 1987-Nov. 1988. According to the unique hydrological and topographical features of the region, six boxes and three layers were considered in the model. The variation rates and fluxes of elements induced by horizontal current, upwelling, by diffusion, sinking of particles and biogeochemical processes were estimated respectively. Results further confirmed that upwellings had important effects in this region. The nearshore upwelling areas had net input fluxes of nutrients brought by upwelling water, also had high depletion rates of nutrients and production rates of particulate organic matter and dissolved oxygen. The abnormal net production of nutrients in the middle layer, (10-30 m) indicated the important role of bacteria in this high production region. The phytoplankton POC contributed about 28% of the total POC. POC settling out from the euphotic zone was estimated to be 2×10-6 g/(m2·s) which was about 35% of the primary production.

Net-phytoplankton communities in the Western Boundary Currents and their environmental correlations

NASA Astrophysics Data System (ADS)

Chen, Yunyan; Sun, Xiaoxia; Zhun, Mingliang

2018-03-01

This study investigated net-phytoplankton biomass, species composition, the phytoplankton abundance horizontal distribution, and the correlations between net-phytoplankton communities and mesoscale structure that were derived from the net samples taken from the Western Boundary Currents during summer, 2014. A total of 199 phytoplankton species belonging to 61 genera in four phyla were identified. The dominant species included Climacodium frauenfeldianum, Thalassiothrix longissima, Rhizosolenia styliformis var. styliformis, Pyrocystis noctiluca, Ceratium trichoceros, and Trichodesmium thiebautii. Four phytoplankton communities were divided by cluster analysis and the clusters were mainly associated with the North Equatorial Counter Current (NECC), the North Equatorial Current (NEC), the Subtropical Counter Current (STCC), and the Luzon Current (LC), respectively. The lowest phytoplankton cell abundance and the highest Trichodesmium filament abundance were recorded in the STCC region. The principal component analysis showed that T. thiebautii preferred warm and nutrient poor water. There was also an increase in phytoplankton abundance and biomass near 5°N in the NECC region, where they benefit from upwellings and eddies.

Can upwelling signals be detected in intertidal fishes of different trophic levels?

PubMed

Pulgar, J; Poblete, E; Alvarez, M; Morales, J P; Aranda, B; Aldana, M; Pulgar, V M

2013-11-01

For intertidal fishes belonging to three species, the herbivore Scartichthys viridis (Blenniidae), the omnivore Girella laevifrons (Kyphosidae) and the carnivore Graus nigra (Kyphosidae), mass and body size relationships were higher in individuals from an upwelling zone compared with those from a non-upwelling zone. RNA:DNA were higher in the herbivores and omnivores from the upwelling zone. Higher biomass and RNA:DNA in the upwelling intertidal fishes may be a consequence of an increased exposure to higher nutrient availability, suggesting that increased physiological conditioning in vertebrates from upwelling areas can be detected and measured using intertidal fishes of different trophic levels. © 2013 The Fisheries Society of the British Isles.

Seasonality in planktic foraminifera of the central California coastal upwelling region

NASA Astrophysics Data System (ADS)

Davis, Catherine V.; Hill, Tessa M.; Russell, Ann D.; Gaylord, Brian; Jahncke, Jaime

2016-09-01

The close association between planktic foraminiferal assemblages and local hydrography make foraminifera invaluable proxies for environmental conditions. Modern foraminiferal seasonality is important for interpreting fossil distributions and shell geochemistry as paleoclimate proxies. Understanding this seasonality in an active upwelling area is also critical for anticipating which species may be vulnerable to future changes in upwelling intensity and ocean acidification. Two years (2012-2014) of plankton tows, along with conductivity-temperature-depth profiles and carbonate chemistry measurements taken along the north-central California shelf, offer new insights into the seasonal dynamics of planktic foraminifera in a seasonal coastal upwelling regime. This study finds an upwelling affinity for Neogloboquadrina pachyderma as well as a seasonal and upwelling associated alternation between dominance of N. pachyderma and Neogloboquadrina incompta, consistent with previous observations. Globigerina bulloides, however, shows a strong affinity for non-upwelled waters, in contrast to findings in Southern California where the species is often associated with upwelling. We also find an apparent lunar periodicity in the abundances of all species and document the presence of foraminifera even at very low saturation states of calcite.

Spatio-temporal variability of upwelling along the southwest coast of India based on satellite observations

NASA Astrophysics Data System (ADS)

Jayaram, Chiranjivi; Kumar, P. K. Dinesh

2018-03-01

Upwelling phenomenon along the eastern boundaries of global ocean has received greater attention in the recent times due to its environmental and economic significance in the global warming and the scenario of changing climate as opined by IPCC AR5. In this context, the availabile satellite data on sea surface winds, sea surface temperature (SST), sea level anomaly (SLA) and chlorophyll-a concentration (Chl-a), for the period 1981-2016 were analyzed to identify the coastal upwelling pattern in the Southeastern Arabian Sea (SEAS). Synergistic approach, using winds, SST, SLA and Chl-a revealed that strong upwelling was prevailing between 8°N and 12°N. During the study period, geographical differences existed in the peak values of upwelling favorable conditions considered for study. Analysis of the alongshore winds which are conducive for upwelling were observed to be curtailed towards the northern part of the study region between 2005 and 2010. Also, the strength of upwelling reduced during the strong ENSO years of 1997 and 2015. Linear regression based trend analysis of upwelling indices like Ekman transport, SST and chlorophyll along the coast, during the upwelling period, revealed slight increase in the strength towards the southern region while it decreased to the north during the study period.

Numerical Study on the influence of Kuroshio Intrusion on Coastal upwelling off Coasts of China

NASA Astrophysics Data System (ADS)

Dezhou, Y.; Yin, B.

2016-02-01

Anomalous distribution of sea surface temperature (SST) has been observed off coasts of Zhejiang province, China in summer 2009 and 2012, respectively, where algal blooms are increasingly reported. Then, the rotated empirical orthogonal functions analysis has been employed to examine the 31 summertime SST fields. A distinct SST mode is identified in this upwelling area, and its principal components show a colder phase in 2009 and a warmer phase in 2012. At the same time, cruise data show colder and more saline bottom water in this upwelling area in summer 2009 relative to that in summer 2012, which implies a more nearshore Kuroshio branch current (NKBC) in summer 2009 and a more offshore NKBC in summer 2012. On the basis of regional ocean model system (ROMS), 20-year hindcast run has been successfully carried out. Model results faithfully reproduce the anomalous SST in summer 2009 and 2012. On the basis of the observational and modeled evidences, we propose that the anomalously cold or warm coastal upwelling is mainly attributed to the extremely shoreward or seaward shift of the NKBC. In other words, the more shoreward the NKBC shift, the colder the surface upwelling water is. In contrast, the more seaward the NKBC shift, the warmer the surface upwelling water is. Moreover, this paper shows a good example that the coastal environment may be profoundly influenced by the remote variation of Kuroshio east of Taiwan, which is highly correlated to the sea surface height east of Taiwan.

Surface ocean carbon isotope anomalies on glacial terminations: An alternative view

NASA Astrophysics Data System (ADS)

Lund, D. C.; Cote, M.; Schmittner, A.

2016-12-01

Late Pleistocene glacial terminations are characterized by surface ocean carbon isotope minima on a global scale. During the last deglaciation (i.e. Termination 1), planktonic foraminiferal δ13C anomalies occurred in the Atlantic, Indian, Pacific, and Southern Oceans. Despite the apparently ubiquitous nature of δ13C anomalies on glacial terminations, their cause remains a matter of ongoing debate. The prevailing view is that isotopically light carbon from the abyss was upwelled in the Southern Ocean, resulting in outgassing of 13C-depleted carbon to the atmosphere and its advection to lower latitudes via mode and intermediate waters (Spero and Lea, 2002). Alternatively, carbon isotope minima may be driven by weakening of the biological pump related to circulation-driven changes in the oceanic preformed nutrient budget (Schmittner and Lund, 2015). Here we assess the deep upwelling and biological pump hypotheses using a new compilation of 70 globally-distributed planktonic δ13C records from the published literature. We find that 1) the mean deglacial δ13C anomaly is similar in all ocean basins, 2) the eastern tropical Pacific yields smaller mean δ13C anomalies than the western tropical Pacific, and 3) δ13C anomalies in the Southern Ocean decrease with increasing latitude. Our results are generally inconsistent with the deep upwelling hypothesis, which predicts that the δ13C signal should be largest in the Southern Ocean and upwelling regions. Instead, the spatial pattern in δ13C anomalies supports the biological pump hypothesis, which predicts that reduced export of light carbon from the euphotic zone triggers negative carbon isotope anomalies in the surface ocean and positive anomalies at intermediate depths. Upwelling of relatively 13C-enriched intermediate waters tends to moderate carbon isotope minima in upwelling regions. Our results suggest that the initial rise in atmospheric CO2 during Termination 1 was likely due to weakening of the biological pump associated with a reduction in the Atlantic Meridional Overturning Circulation, consistent with model results (Schmittner and Lund, 2015). Spero, H., and D. Lea (2002) Science 296, 522-525. Schmittner, A., and D. Lund (2015) Climate of the Past 11, 135-152.

Surface circulation and upwelling patterns around Sri Lanka

NASA Astrophysics Data System (ADS)

de Vos, A.; Pattiaratchi, C. B.; Wijeratne, E. M. S.

2013-09-01

Sri Lanka occupies a unique location within the equatorial belt in the northern Indian Ocean with the Arabian Sea on its western side and the Bay of Bengal on its eastern side. The region is characterised by bi-annually reversing monsoon winds resulting from seasonal differential heating and cooling of the continental land mass and the ocean. This study explored elements of the dynamics of the surface circulation and coastal upwelling in the waters around Sri Lanka using satellite imagery and the Regional Ocean Modelling System (ROMS) configured to the study region and forced with ECMWF interim data. The model was run for 2 yr to examine the seasonal and shorter term (∼10 days) variability. The results confirmed the presence of the reversing current system in response to the changing wind field: the eastward flowing Southwest Monsoon Current (SMC) during the Southwest (SW) monsoon transporting 11.5 Sv and the westward flowing Northeast Monsoon Current (NMC) transporting 9.5 Sv during the Northeast (NE) monsoon, respectively. A recirculation feature located to the east of Sri Lanka during the SW monsoon, the Sri Lanka Dome, is shown to result from the interaction between the SMC and the Island of Sri Lanka. Along the eastern and western coasts, during both monsoon periods, flow is southward converging along the south coast. During the SW monsoon the Island deflects the eastward flowing SMC southward whilst along the east coast the southward flow results from the Sri Lanka Dome recirculation. The major upwelling region, during both monsoon periods, is located along the south coast and is shown to be due to flow convergence and divergence associated with offshore transport of water. Higher surface chlorophyll concentrations were observed during the SW monsoon. The location of the flow convergence and hence the upwelling centre was dependent on the relative strengths of wind driven flow along the east and west coasts: during the SW (NE) monsoon the flow along the western (eastern) coast was stronger and hence the upwelling centre was shifted to the east (west). The presence of upwelling along the south coast during both monsoon periods may explain the blue whale (Balaenoptera musculus) aggregations in this region.

Disintegration of an eruptive filament via interactions with quasi-separatrix layers

NASA Astrophysics Data System (ADS)

Liu, Rui; Chen, Jun; Wang, YuMing

2018-06-01

The disintegration of solar filaments via mass drainage is a frequently observed phenomenon during a variety of filament activities. It is generally considered that the draining of dense filament material is directed by both gravity and magnetic field, yet the detailed process remains elusive. Here we report on a partial filament eruption during which filament material drains downward to the surface not only along the filament's legs, but to a remote flare ribbon through a fan-out curtain-like structure. It is found that the magnetic configuration is characterized by two conjoining dome-like quasi-sepratrix layers (QSLs). The filament is located underneath one QSL dome, whose footprint apparently bounds the major flare ribbons resulting from the filament eruption, whereas the remote flare ribbon matches well with the other QSL dome's far-side footprint. We suggest that the interaction of the filament with the overlying QSLs results in the splitting and disintegration of the filament.

Jurassic-Cretaceous paleogeography, paleoclimate and upwelling of the northern margin of Tethys

DOE Office of Scientific and Technical Information (OSTI.GOV)

Golonka, J.; Krobicki, M.

The Jurassic and Cretaceous global paleogeographic reconstructions illustrate the changing configuration of mountains, land, shallow seas and deep ocean basins. Active plate boundaries, such as spreading centers and subduction zones, are also shown. The Pliensbachian, Toarcian, Bathonian, Oxfordian-Kimmeridgian, Tithonian-Berriasian, Valanginian, Albian, Turonian and Maastrichtian maps were generated The outlines of paleogeography are used as input for paleoclimatic modeling. The PALEOCLIMATE program models global atmospheric pressure, derive paleo-wind directions and estimate the likelihood of coastal upwelling. The program is based on the paleoclimatic methods first developed by Judith Parrish, adopted by C. R. Scotese and modified by M. I. Ross. Themore » maps depict air pressure, wind directions, humid zones and areas favorable for upwelling conditions plotted on the paleogeographic background. Paleoclimate modeling suggests that prevailing Jurassic-Cretaceous wind directions in the northern Tethys area were from north-northeast. These winds were parallel to the axis of Czorsztyn ridge. The ridge was uplifted between Magura and Pieniny basins as the result of extension during Jurassic supercontinent breakup. The upwelling may have been induced at the southeastern margin of the ridge. The model is consistent with rock records, especially from the upper part of ammonitico rosso type Czorsztyn formation. Mass occurrence of Tithonian and Berriasian brachiopods was probably controlled by upwelling-induced trophic relationships which is resulted in the intense growth of benthic organisms on the ridge. This is additionally supported by the presence of phosphorites at localities which corresponded to the continental shelf/slope transition.« less

Temporal and spatial changes in plankton respiration and biomass in the Canary Islands region: the effect of mesoscale variability

NASA Astrophysics Data System (ADS)

Arístegui, Javier; Montero, María F.

2005-02-01

The temporal and spatial variabilities in the abundance and respiratory activity of plankton communities (<200 μm) were studied during three seasonal cruises around Gran Canaria Island (Canary Islands), a region of high mesoscale variability. Marked seasonal changes in respiratory activity, plankton community structure, and the ratio of heterotrophic to autotrophic biomass can be largely explained by hydrographic changes at the mesoscale level. Wind/current shearing at the flanks of the island enhances plankton respiration, presumably as the consequence of an increase in turbulence. Counter-paired cyclonic and anticyclonic eddies generated downstream of the island act as a two-way biological pump, increasing plankton production by nutrient pumping into the euphotic zone and accelerating the transport of organic matter into the aphotic zone, respectively. Coastal upwelling waters invading the Canary region in the form of filaments can transport either water with low plankton respiration and large phytoplankton cells or water with high respiratory rates associated with small cells. Plankton respiration was closely related to the abundance of Synechococcus type cyanobacteria and heterotrophic nanoflagellates during the three periods, but was only correlated with chlorophyll during the most fertile season, suggesting that respiration was mainly linked to microbial food web processes. Size-fractionated studies showed that 51-67% of the respiratory activity was due to picoplankton cells (<2 μm). Respiration rates (average values: 113±18 to 187±87 mmol C m -2 d -1) matched primary production rates during the fertile period, but were up to one order of magnitude higher during the rest of the year. Substantial inputs of organic matter from the coastal upwelling would be necessary to balance the large annual heterotrophic deficit in the region of study.

Late Pliocene Sea Surface Temperature contrast in the Benguela upwelling as recorded by foraminiferal Mg/Ca and alkenones

NASA Astrophysics Data System (ADS)

Leduc, G.; Garbe-Schoenberg, C.; Regenberg, M.; Schneider, R. R.

2011-12-01

Alkenone-based sea surface temperature (SST) in the Benguela region reveal quite warm and stable conditions between ~3.0 and 2.0 Ma, coinciding with a period of very high diatom production as revealed by mass accumulation rates (MAR) of biogenic opal (Marlow et al., 2000, Science; Etourneau et al., 2009, Geology). Such a pattern is difficult to believe with the general perception that high diatom productivity results from strong coastal upwelling associated with pronounced Surface Ocean cooling. Therefore we assessed whether different paleothermometers from the same sedimentary archive (i.e. ODP site 1082) provide different results for the Namibian upwelling system by performing a comparison between alkenone-derived temperatures and those from the planktonic foraminifera Globigerinoides bulloides, a species known to proliferate in upwelling regions. We used laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) for multiple in situ determination of Mg/Ca in single tests of G. bulloides. These measurements allow monitoring of contaminant phases linked to Mg-rich clays (monitored by Al/Ca) and Mn-rich foraminiferal tests, which contain substantial high Mg (monitored by Mn/Ca) (Pena et al., 2005, G-cubed). Moreover, using LA-ICP-MS measurements for Mg/Ca ratios on single specimens allows estimating the range of seasonal or vertical temperature variability by considering the intra-sample variance in the SST estimated from different specimens and/or different chambers within the same specimen. When compared to the Pliocene alkenone SST record, the Mg/Ca-ratios imply SSTs colder by ~10°C. A similar contrast in SST estimates between these two proxies was reported for the last 20 ka in the same region (Farmer et al., 2005, Paleoceanography). Such discrepancy can be reconciled by assuming that the two SST proxies are either strongly skewed towards warm (non-upwelling) and cold (upwelling) conditions for alkenones and Mg/Ca SST, respectively, or by the possibility that G. bulloides captures a temperature signal integrated over a larger water depth range. If representative for a specific season, downcore SST estimates from the two proxies may provide reliable evidences for changes in the seasonal temperature contrasts and thus upwelling intensity during the Pliocene. Even if the absolute temperature contrasts recorded between these two proxies have not dramatically changed between the Pliocene and Late Quaternary, the range of SST estimates between single specimen Mg/Ca values may hint to changes in past upwelling intensity. Accordingly, the scattering of intra-sample Mg/Ca values tends to increase together with the opal MAR, probably reflecting enhanced temperature contrasts at times of intense upwelling and diatom production which occurred during the cold season, one feature that is not captured by alkenone SST records.

Coastal upwelling and downwelling forcing of circulation in a semi-enclosed bay: Ria de Vigo

NASA Astrophysics Data System (ADS)

Barton, E. D.; Largier, J. L.; Torres, R.; Sheridan, M.; Trasviña, A.; Souza, A.; Pazos, Y.; Valle-Levinson, A.

2015-05-01

Semi-enclosed bays in upwelling regions are exposed to forcing related to winds, currents and buoyancy over the shelf. The influence of this external forcing is moderated by factors such as connectivity to the open ocean, shelter by surrounding topography, dimensions of the bay, and freshwater outflows. Such bays, preferred locations for ports, mariculture, marine industry, recreational activities and coastal settlement, present a range of characteristics, understanding of which is necessary to their rational management. Observations in such a semi-enclosed bay, the Ria de Vigo in Spain, are used to characterize the influence of upwelling and downwelling pulses on its circulation. In this location, near the northern limit of the Iberian upwelling system, upwelling events dominate during a short summer season and downwelling events the rest of the year. The ria response to the external forcing is central to nutrient supply and resultant plankton productivity that supports its high level of cultured mussel production. Intensive field studies in September 2006 and June 2007 captured a downwelling event and an upwelling event, respectively. Data from eight current profiler moorings and boat-based MiniBat/ADCP surveys provided an unprecedented quasi-synoptic view of the distribution of water masses and circulation patterns in any ria. In the outer ria, circulation was dominated by the introduction of wind-driven alongshore flow from the external continental shelf through the ria entrances and its interaction with the topography. In the middle ria, circulation was primarily related to the upwelling/downwelling cycle, with a cool, salty and dense lower layer penetrating to the inner ria during upwelling over the shelf. A warmer, lower salinity and less dense surface layer of coastal waters flowed inward during downwelling. Without external forcing, the inner ria responded primarily to tides and buoyancy changes related to land runoff. Under both upwelling and downwelling conditions, the flushing of the ria involved shelf responses to wind pulses. Their persistence for a few days was sufficient to allow waters from the continental shelf to penetrate the innermost ria. Longer term observations supported by numerical modeling are required to confirm the generality of such flushing events in the ria and determine their typical frequency, while comparative studies should explore how these scenarios fit into the range of conditions experienced in other semi-enclosed bays.

Coastal Jets, Oceanic Upwelling, Mesoscale Eddies, and Clouds in the Southeast Pacific

NASA Astrophysics Data System (ADS)

Hong, X.; Wang, S.; Jiang, Q.; O'Neill, L. W.; Hodur, R.; Chen, S.; Martin, P.; Cummings, J. A.

2009-12-01

Coastal jets, oceanic upwelling, mesoscale eddies, and clouds in the Southeast Pacific (SEP) are studied using the two-way-coupled COAMPS/NCOM system with the NCODA for the ocean data assimilation. The coupled system was run for the period of the VAMOS Ocean-Cloud-Atmosphere-Land Study (VOCALS) field campaign from 20 October to 30 November, 2008. The investigation of the feedback between the atmosphere and the ocean is focused on the periods of the strong and the weak coastal jets. During the strong coastal jet period, colder and drier air along the coast results in larger surface heat fluxes and increased boundary layer height. More extensive and organized clouds are generated in the strongly unstable conditions in the atmospheric boundary layer. The oceanic upwelling is stronger and the upwelled cold water extends further offshore. During the weak coastal jet period, the cyclonic and anti-cyclonic oceanic eddies propagate westward more significantly. The inertial oscillations induced by the variations of the wind stress also increase in strength with stronger phase shifts between the oscillations in the upper and the lower layers of the ocean. In addition, the model results from the coupled system were evaluated with available observations from the VOCALS field campaign.

Evaluation of ERTS data for certain oceanographic uses. [upwelling, water circulation, and pollution in Great Lakes

NASA Technical Reports Server (NTRS)

Strong, A. E. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Upwelling along the eastern shore of Lake Michigan was occurring during the 3 and 21 August 1973 visits by ERTS-1. The NOAA-2 VHRR thermal-IR data are being digitized for comparison. Early indications are that these upwellings induced a calcium carbonate precipitate to form in the surface waters. It is most pronounced in the MSS-4 channel. On the lake bottom this jell-like sediment is known as marl and adds to the eutrophication of the lake. This phenomenon may help to explain the varve-like nature of bottom cores that have been observed in the Great Lakes.

Dynamics of Black Band Disease in a Diploria strigosa population subjected to annual upwelling on the northeastern coast of Venezuela

NASA Astrophysics Data System (ADS)

Rodríguez, S.; Cróquer, A.

2008-06-01

Temporal variability of Black Band Disease (BBD) prevalence, incidence, recurrence, recovery and virulence was estimated in a Diploria strigosa population from an upwelling zone of Venezuela, for 1 year between August 2004 and August 2005. The sampling spanned both upwelling and non-upwelling seasons, and included three samplings, roughly 60 days apart, within each season. The negative effects of BBD epizootiology in the sampling population (El Mercado reef) were positively correlated with sea surface temperature (taken as an upwelling estimator). Disease prevalence, incidence and recurrence decreased significantly during upwelling, and the recovery rate increased. Contrary to expectations, tissue mortality did not decrease significantly during the upwelling season, remaining at 1.2 ± 0.7 mm day-1. BBD prevalence, and the ensuing rates of tissue mortality were higher than values previously reported for other Caribbean reefs, even during upwelling episodes, suggesting that nutrient enrichment of the local waters by upwelling counteracts the expected reductions of the disease prevalence and virulence due to the lower temperature. Colonies which had previously been infected with BBD were up to six times more susceptible to new infections than those which were not infected during the preceding 7 months, suggesting that the infected colonies never healed completely. The high variability between tissue mortality values among coral colonies also suggests that overall host health-status may alter susceptibility to BBD infections.

Coupled ice-ocean dynamics in the marginal ice zones Upwelling/downwelling and eddy generation

NASA Technical Reports Server (NTRS)

Hakkinen, S.

1986-01-01

This study is aimed at modeling mesoscale processes such as upwelling/downwelling and ice edge eddies in the marginal ice zones. A two-dimensional coupled ice-ocean model is used for the study. The ice model is coupled to the reduced gravity ocean model through interfacial stresses. The parameters of the ocean model were chosen so that the dynamics would be nonlinear. The model was tested by studying the dynamics of upwelling. Wings parallel to the ice edge with the ice on the right produce upwelling because the air-ice momentum flux is much greater than air-ocean momentum flux; thus the Ekman transport is greater than the ice than in the open water. The stability of the upwelling and downwelling jets is discussed. The downwelling jet is found to be far more unstable than the upwelling jet because the upwelling jet is stabilized by the divergence. The constant wind field exerted on a varying ice cover will generate vorticity leading to enhanced upwelling/downwelling regions, i.e., wind-forced vortices. Steepening and strengthening of vortices are provided by the nonlinear terms. When forcing is time-varying, the advection terms will also redistribute the vorticity. The wind reversals will separate the vortices from the ice edge, so that the upwelling enhancements are pushed to the open ocean and the downwelling enhancements are pushed underneath the ice.

Changes in upwelling and surface productivity in the Eastern Pacific during Terminations I and II

NASA Astrophysics Data System (ADS)

Erdem, Z.; De Bar, M.; Stolwijk, D.; Schneider, R. R.; S Sinninghe Damsté, J.; Schouten, S.

2017-12-01

The Eastern Pacific coastal system is characterized by intense upwelling and consequently by an enhanced surface primary productivity. Combination of this high organic matter flux with sluggish bottom water ventilation results in one of the most pronounced oxygen minimum zones reaching from offshore California in the North to offshore Chile in the South. As a result of this process, the region is particularly interesting in view of nutrient and carbon cycling as well as ecosystem dynamics. The dynamics of the upwelling and oxygen concentrations are closely related to climatic conditions. Therefore, paleo-reconstructions of different settings are crucial in order to improve our understanding of the response of these nutrient-rich, oxygen-deficient, environments in relation to the recent global ocean warming, acidification and deoxygenation. In this study, we present downcore results from three different sites in the Eastern Pacific: offshore California (IODP site 1012), Peru (M77/2-52-2) and Chile (IODP site 1234). We applied different biomarkers as proxies to decipher changes in phytoplankton community composition, including the upwelling index based on long chain diols, and other common productivity indicators such as bulk organic carbon, carbonate and biogenic opal. In addition, application of carbon and nitrogen isotope ratios of total organic carbon and benthic foraminifera complement our multiproxy approach. Herewith we aim to compare at least two glacial-interglacial transitions with different magnitudes of deglacial warming along the Eastern Pacific upwelling systems at different latitudes. The data presented will cover the last 160 ka BP offshore California and Chile, and 30 ka BP offshore Peru enabling comparison between glacial Terminations I and II.

Physical processes affecting availability of dissolved silicate for diatom production in the Arabian Sea

NASA Technical Reports Server (NTRS)

Young, David K.; Kindle, John C.

1994-01-01

A passive tracer to represent dissolved silicate concentrations, with biologically realistic uptake kinetics, is successfully incorporated into a three-dimensional, eddy-resolving, ocean circulation model of the Indian Ocean. Hypotheses are tested to evaluate physical processes which potentially affect the availability of silicate for diatom production in the Arabian Sea. An alternative mechanism is offered to the idea that open ocean upwelling is primarily responsible for the high, vertical nutrient flux and consequent large-scale phytoplankton bloom in the northwestern Arabian Sea during the southwest monsoon. Model results show that dissolved silicate in surface waters available for uptake by diatoms is primarily influenced by the intensity of nearshore upwelling from soutwest monsoonal wind forcing and by the offshore advective transport of surface waters. The upwelling, which in the model occurs within 200 +/- 50 km of the coast, appears to be a result of a combination of coastal upwelling, Elkman pumping, and divergence of the coastal flow as it turns offshore. Localized intensifications of silicate concentrations appear to be hydrodynamically driven and geographically correlated to coastal topographic features. The absence of diatoms in sediments of the eastern Arabian Basin is consistent with modeled distributional patterns of dissolved silicate resulting from limited westward advection of upwelled coastal waters from the western continental margin of India and rapid uptake of available silicate by diatoms. Concentrations of modeled silicate become sufficiently low to become unavailable for diatom production in the eastern Arabian Sea, a region between 61 deg E and 70 deg E at 8 deg N on the south, with the east and west boundaries converging on the north at approximately 67 deg E, 20 deg N.

Late quaternary time series of Arabian Sea productivity: Global and regional signals

NASA Technical Reports Server (NTRS)

Clemens, Steven C.; Prell, W. L.; Murray, D. W.

1992-01-01

Modern annual floral and faunal production in the northwest Arabian Sea derives primarily from upwelling induced by strong southwest winds during June, July, and August. Indian Ocean summer monsoon winds are, in turn, driven by differential heating between the Asian continent and the Indian ocean to the south. This differential heating produces a strong pressure gradient resulting in southwest monsoon winds and both coastal and divergent upwelling off the Arabian Peninsula. Over geologic time scales (10(exp 4) to 10(exp 6) years), monsoon wind strength is sensitive to changes in boundary conditions which influence this pressure gradient. Important boundary conditions include the seasonal distribution of solar radiation, global ice volume, Indian Ocean sea surface temperature, and the elevation and albedo of the Asian continent. To the extent that these factors influence monsoon wind strength, they also influence upwelling and productivity. In addition, however, productivity associated with upwelling can be decoupled from the strength of the summer monsoon winds via ocean mechanisms which serve to inhibit or enhance the nutrient supply in the intermediate waters of the Indian Ocean, the source for upwelled waters in the Arabian Sea. To differentiate productivity associated with wind-induced upwelling from that associated with other components of the system such as nutrient sequestering in glacial-age deep waters, we employ a strategy which monitors independent components of the oceanic and atmospheric subsystems. Using sediment records from the Owen Ridge, northwest Arabian Sea, we monitor the strength of upwelling and productivity using two independent indicators, percent G. bulloides and opal accumulation. We monitor the strength of southwest monsoon winds by measuring the grain-size of lithogenic dust particles blown into the Arabian Sea from the surrounding deserts of the Somali and Arabian Peninsulas. Our current hypothesis is that the variability associated with the 41 kyr power in the G. bulloides and opal accumulation records derive from nutrient availability in the intermediate waters which are upwelled via monsoon winds. This hypothesis is testable by comparison with Cd records of intermediate and deep waters of the Atlantic and Indian Ocean.

Geodynamic constraints on deep-mantle buoyancy: Implications for thermochemical structure of LLSVP and large-scale upwellings under the Pacific Ocean.

NASA Astrophysics Data System (ADS)

Forte, A. M.; Glisovic, P.; Grand, S. P.; Lu, C.; Simmons, N. A.; Rowley, D. B.

2015-12-01

Convection-related data constrain lower-mantle density anomalies that contribute to mantle convective flow. These include global gravity and topography anomalies, plate motions and excess ellipticity of the core-mantle boundary (CMB). Each datum possesses differing wavelength and depth dependent resolution of heterogeneity and thus the strongest constraints on density anomalies are obtained by jointly inverting all data in combination. The joint-inversions employ viscous response functions (i.e. geodynamic kernels) for a flowing mantle. Non-uniqueness is greatly reduced by including seismic and mineral physics data into the joint inversions. We present the results of inversions where seismic and geodynamic data are singly and jointly inverted to map density anomalies. Employing mineral physical data we estimate thermal and compositional contributions to density anomalies. We evaluate the extent to which "Large Low Shear Velocity Provinces" (LLSVP) are anomalous and we determine their impact on the global pattern of convective flow. The inversions yield consistent maps of lower-mantle flow (see figure) that are dominated by two large upwellings, under the Western Pacific (next to the Caroline microplate) and Eastern Pacific (under the East Pacific Rise). These hot upwellings effectively delimit the margins of the Pacific LLSVP, suggesting intrinsic negative buoyancy within this structure impedes large-scale upwellings in the mantle above. These two upwellings do not resemble classical mantle "plumes" found in simple isoviscous and isochemical convection models but their contribution to mass and heat transport across the lower mantle is significant and thus behave similarly to plumes. The large scale of these upwellings may be understood in terms of the high viscosity in the lower mantle, inferred from geodynamic constraints on mantle rheology. Very-long time convection simulations initiated with present-day structure inferred from these inversions show the two Pacific upwellings possess remarkable geographic fixity and longevity extending over several hundred million years, again a consequence of the high viscosity in the lower mantle. These upwellings are fed by large heat flux across the CMB (from 12 to 20 TW) and should play a major role in the thermal evolution of the mantle.

The Effects of Ridge Axis Width on Mantle Melting at Mid-Ocean Ridges

NASA Astrophysics Data System (ADS)

Montesi, L.; Magni, V.; Gaina, C.

2017-12-01

Mantle upwelling in response to plate divergence produces melt at mid-ocean ridges. Melt starts when the solidus is crossed and stops when conductive cooling overcomes heat advection associated with the upwelling. Most mid-ocean ridge models assume that divergence takes place only in a narrow zone that defines the ridge axis, resulting in a single upwelling. However, more complex patterns of divergence are occasionally observed. The rift axis can be 20 km wide at ultraslow spreading center. Overlapping spreading center contain two parallel axes. Rifting in backarc basins is sometimes organized as a series of parallel spreading centers. Distributing plate divergence over several rifts reduces the intensity of upwelling and limits melting. Can this have a significant effect on the expected crustal thickness and on the mode of melt delivery at the seafloor? We address this question by modeling mantle flow and melting underneath two spreading centers separated by a rigid block. We adopt a non-linear rheology that includes dislocation creep, diffusion creep and yielding and include hydrothermal cooling by enhancing thermal conductivity where yielding takes place. The crustal thickness decreases if the rifts are separated by 30 km or more but only if the half spreading rate is between 1 and 2 cm/yr. At melting depth, a single upwelling remains the norm until the separation of the rifts exceeds a critical value ranging from 15 km in the fastest ridges to more than 50 km at ultraslow spreading centers. The stability of the central upwelling is due to hydrothermal cooling, which prevents hot mantle from reaching the surface at each spreading center. When hydrothermal cooling is suppressed, or the spreading centers are sufficiently separated, the rigid block becomes extremely cold and separates two distinct, highly asymmetric upwellings that may focus melt beyond the spreading center. In that case, melt delivery might drive further and further the divergence centers, whereas, when a single upwelling is retained, melt delivery would drive the spreading centers closer together. Thus, the system composed of two rifts is unstable and, if observed in nature, indicates either a transient geodynamic regime, like a recent change in spreading rates, or control structural or stress heterogeneities.

On the fragmentation of filaments in a molecular cloud simulation

NASA Astrophysics Data System (ADS)

Chira, R.-A.; Kainulainen, J.; Ibáñez-Mejía, J. C.; Henning, Th.; Mac Low, M.-M.

2018-03-01

Context. The fragmentation of filaments in molecular clouds has attracted a lot of attention recently as there seems to be a close relation between the evolution of filaments and star formation. The study of the fragmentation process has been motivated by simple analytical models. However, only a few comprehensive studies have analysed the evolution of filaments using numerical simulations where the filaments form self-consistently as part of large-scale molecular cloud evolution. Aim. We address the early evolution of parsec-scale filaments that form within individual clouds. In particular, we focus on three questions: How do the line masses of filaments evolve? How and when do the filaments fragment? How does the fragmentation relate to the line masses of the filaments? Methods: We examine three simulated molecular clouds formed in kiloparsec-scale numerical simulations performed with the FLASH adaptive mesh refinement magnetohydrodynamic code. The simulations model a self-gravitating, magnetised, stratified, supernova-driven interstellar medium, including photoelectric heating and radiative cooling. We follow the evolution of the clouds for 6 Myr from the time self-gravity starts to act. We identify filaments using the DisPerSe algorithm, and compare the results to other filament-finding algorithms. We determine the properties of the identified filaments and compare them with the predictions of analytic filament stability models. Results: The average line masses of the identified filaments, as well as the fraction of mass in filamentary structures, increases fairly continuously after the onset of self-gravity. The filaments show fragmentation starting relatively early: the first fragments appear when the line masses lie well below the critical line mass of Ostriker's isolated hydrostatic equilibrium solution ( 16 M⊙ pc-1), commonly used as a fragmentation criterion. The average line masses of filaments identified in three-dimensional volume density cubes increases far more quickly than those identified in two-dimensional column density maps. Conclusions: Our results suggest that hydrostatic or dynamic compression from the surrounding cloud has a significant impact on the early dynamical evolution of filaments. A simple model of an isolated, isothermal cylinder may not provide a good approach for fragmentation analysis. Caution must be exercised in interpreting distributions of properties of filaments identified in column density maps, especially in the case of low-mass filaments. Comparing or combining results from studies that use different filament finding techniques is strongly discouraged.

Scales of variability of bio-optical properties as observed from near-surface drifters

NASA Technical Reports Server (NTRS)

Abbott, Mark R.; Brink, Kenneth H.; Booth, C. R.; Blasco, Dolors; Swenson, Mark S.; Davis, Curtiss O.; Codispoti, L. A.

1995-01-01

A drifter equipped with bio-optical sensors and an automated water sampler was deployed in the California Current as part of the coastal transition zone program to study the biological, chemical, and physical dynamics of the meandering filaments. During deployments in 1987 and 1988, measurements were made of fluorescence, downwelling irradiance, upwelling radiance, and beam attenuation using several bio-optical sensors. Samples were collected by an automated sampler for later analysis of nutrients and phytoplankton species compositon. Large-scale spatial and temporal changes in the bio-optical and biological properties of the region were driven by changes in phytoplankton species composition which, in turn, were associated with the meandering circulation. Variance spectra of the bio-optical paramenters revealed fluctuations on both diel and semidiurnal scales, perhaps associated with solar variations and internal tides, respectively. Offshore, inertial-scale fluctuations were apparent in the variance spectra of temperature, fluorescence, and beam attenuation. Although calibration samples can help remove some of these variations, these results suggest that the use of bio-optical data from unattended platforms such as moorings and drifters must be analyzed carefully. Characterization of the scaled of phytoplankton variability must account for the scales of variability in the algorithms used to convert bio-optical measurments into biological quantities.

Submesoscale-selective compensation of fronts in a salinity-stratified ocean

PubMed Central

Spiro Jaeger, Gualtiero; Mahadevan, Amala

2018-01-01

Salinity, rather than temperature, is the leading influence on density in some regions of the world’s upper oceans. In the Bay of Bengal, heavy monsoonal rains and runoff generate strong salinity gradients that define density fronts and stratification in the upper ~50 m. Ship-based observations made in winter reveal that fronts exist over a wide range of length scales, but at O(1)-km scales, horizontal salinity gradients are compensated by temperature to alleviate about half the cross-front density gradient. Using a process study ocean model, we show that scale-selective compensation occurs because of surface cooling. Submesoscale instabilities cause density fronts to slump, enhancing stratification along-front. Specifically for salinity fronts, the surface mixed layer (SML) shoals on the less saline side, correlating sea surface salinity (SSS) with SML depth at O(1)-km scales. When losing heat to the atmosphere, the shallower and less saline SML experiences a larger drop in temperature compared to the adjacent deeper SML on the salty side of the front, thus correlating sea surface temperature (SST) with SSS at the submesoscale. This compensation of submesoscale fronts can diminish their strength and thwart the forward cascade of energy to smaller scales. During winter, salinity fronts that are dynamically submesoscale experience larger temperature drops, appearing in satellite-derived SST as cold filaments. In freshwater-influenced regions, cold filaments can mark surface-trapped layers insulated from deeper nutrient-rich waters, unlike in other regions, where they indicate upwelling of nutrient-rich water and enhanced surface biological productivity. PMID:29507874

Ecology of Thioploca spp.: nitrate and sulfur storage in relation to chemical microgradients and influence of Thioploca spp. on the sedimentary nitrogen cycle.

PubMed

Zopfi, J; Kjaer, T; Nielsen, L P; Jørgensen, B B

2001-12-01

Microsensors, including a recently developed NO3(-) biosensor, were applied to measure O(2) and NO3(-) profiles in marine sediments from the upwelling area off central Chile and to investigate the influence of Thioploca spp. on the sedimentary nitrogen metabolism. The studies were performed in undisturbed sediment cores incubated in a small laboratory flume to simulate the environmental conditions of low O(2), high NO3(-), and bottom water current. On addition of NO3(-) and NO2(-), Thioploca spp. exhibited positive chemotaxis and stretched out of the sediment into the flume water. In a core densely populated with Thioploca, the penetration depth of NO3(-) was only 0.5 mm and a sharp maximum of NO3(-) uptake was observed 0.5 mm above the sediment surface. In sediments with only few Thioploca spp., NO3(-) was detectable down to a depth of 2 mm and the maximum consumption rates were observed within the sediment. No chemotaxis toward nitrous oxide (N2O) was observed, which is consistent with the observation that Thioploca does not denitrify but reduces intracellular NO3(-) to NH(4)(+). Measurements of the intracellular NO3(-) and S(0) pools in Thioploca filaments from various depths in the sediment gave insights into possible differences in the migration behavior between the different species. Living filaments containing significant amounts of intracellular NO3(-) were found to a depth of at least 13 cm, providing final proof for the vertical shuttling of Thioploca spp. and nitrate transport into the sediment.

Phytoplankton dynamics in relation to seasonal variability and upwelling and relaxation patterns at the mouth of Ria de Aveiro (West Iberian Margin) over a four-year period

PubMed Central

Calado, António José; Moita, Maria Teresa; Cunha, Marina R.

2017-01-01

From June 2004 to December 2007, samples were weekly collected at a fixed station located at the mouth of Ria de Aveiro (West Iberian Margin). We examined the seasonal and inter-annual fluctuations in composition and community structure of the phytoplankton in relation to the main environmental drivers and assessed the influence of the oceanographic regime, namely changes in frequency and intensity of upwelling events, over the dynamics of the phytoplankton assemblage. The samples were consistently handled and a final subset of 136 OTUs (taxa with relative abundance > 0.01%) was subsequently submitted to various multivariate analyses. The phytoplankton assemblage showed significant changes at all temporal scales but with an overriding importance of seasonality over longer- (inter-annual) or shorter-term fluctuations (upwelling-related). Sea-surface temperature, salinity and maximum upwelling index were retrieved as the main driver of seasonal change. Seasonal signal was most evident in the fluctuations of chlorophyll a concentration and in the high turnover from the winter to spring phytoplankton assemblage. The seasonal cycle of production and succession was disturbed by upwelling events known to disrupt thermal stratification and induce changes in the phytoplankton assemblage. Our results indicate that both the frequency and intensity of physical forcing were important drivers of such variability, but the outcome in terms of species composition was highly dependent on the available local pool of species and the timing of those events in relation to the seasonal cycle. We conclude that duration, frequency and intensity of upwelling events, which vary seasonally and inter-annually, are paramount for maintaining long-term phytoplankton diversity likely by allowing unstable coexistence and incorporating species turnover at different scales. Our results contribute to the understanding of the complex mechanisms of coastal phytoplankton dynamics in relation to changing physical forcing which is fundamental to improve predictability of future prospects under climate change. PMID:28472179

Phytoplankton dynamics in relation to seasonal variability and upwelling and relaxation patterns at the mouth of Ria de Aveiro (West Iberian Margin) over a four-year period.

PubMed

Vidal, Tânia; Calado, António José; Moita, Maria Teresa; Cunha, Marina R

2017-01-01

From June 2004 to December 2007, samples were weekly collected at a fixed station located at the mouth of Ria de Aveiro (West Iberian Margin). We examined the seasonal and inter-annual fluctuations in composition and community structure of the phytoplankton in relation to the main environmental drivers and assessed the influence of the oceanographic regime, namely changes in frequency and intensity of upwelling events, over the dynamics of the phytoplankton assemblage. The samples were consistently handled and a final subset of 136 OTUs (taxa with relative abundance > 0.01%) was subsequently submitted to various multivariate analyses. The phytoplankton assemblage showed significant changes at all temporal scales but with an overriding importance of seasonality over longer- (inter-annual) or shorter-term fluctuations (upwelling-related). Sea-surface temperature, salinity and maximum upwelling index were retrieved as the main driver of seasonal change. Seasonal signal was most evident in the fluctuations of chlorophyll a concentration and in the high turnover from the winter to spring phytoplankton assemblage. The seasonal cycle of production and succession was disturbed by upwelling events known to disrupt thermal stratification and induce changes in the phytoplankton assemblage. Our results indicate that both the frequency and intensity of physical forcing were important drivers of such variability, but the outcome in terms of species composition was highly dependent on the available local pool of species and the timing of those events in relation to the seasonal cycle. We conclude that duration, frequency and intensity of upwelling events, which vary seasonally and inter-annually, are paramount for maintaining long-term phytoplankton diversity likely by allowing unstable coexistence and incorporating species turnover at different scales. Our results contribute to the understanding of the complex mechanisms of coastal phytoplankton dynamics in relation to changing physical forcing which is fundamental to improve predictability of future prospects under climate change.

Export of pre-aged, labile DOM from a central California coastal upwelling system: Insights from D/L amino acids and Δ14C signatures

NASA Astrophysics Data System (ADS)

Walker, B. D.; Shen, Y.; Benner, R. H.; Druffel, E. R. M.

2014-12-01

Coastal upwelling zones are among the most productive regions in the world and play a major role in global carbon and nitrogen cycles. Recent research suggests that a substantial fraction of newly fixed organic matter is exported offshore in the form of dissolved organic matter (DOM). However, to date only a few studies have examined DOM composition in the context of production and export from upwelling systems. The ultimate fate and geochemical impact of coastal DOM exported to offshore and mesopelagic ecosystems also remains largely unknown. Between 2007-2009 we conducted a high-resolution biogeochemical time series at the Granite Canyon Marine Pollution Studies Lab in part to evaluate the seasonal production and export of DOM from the Central CA coast. Our previous work demonstrated substantial, albeit disparate, seasonal production of dissolved organic carbon and nitrogen (DOC, DON) - with high DON (and low C:N ratios) produced during upwelling and high DOC produced during summer/fall water column stratification (Walker and McCarthy, 2012). Here we present new total dissolved D/L amino acid (TDAA) and UV-oxidizable DOC radiocarbon (Δ14C) data with the goal of determining the relative sources (heterotrophic vs. autotrophic), bioavailability, microbial processing and 14C-ages of C-rich vs. N-rich DOM exported from this upwelling system. Our results suggest that C-rich DOM produced during water column stratification carries a large microbial signature (i.e. high D/L AA ratios and non-protein AA abundance), whereas N-rich DOM produced during upwelling appears to be fresh, autotrophic DOM (i.e. lowest D/L AA ratios and highest TDAA abundance). DOM Δ14C signatures also did not approximate in situ dissolved inorganic carbon (DIC), and instead were far more negative and highly correlated to water mass density. Together our results indicate a previously unrecognized source of highly labile yet pre-aged DOM potentially impacting offshore and mesopelagic ecosystems.

Upwelling Measurement Issues at the CERES Ocean Validation Experiment (COVE)

NASA Astrophysics Data System (ADS)

Fabbri, B. E.; Schuster, G. L.; Denn, F. M.; Arduini, R. F.; Madigan, J. J.; Rutan, D. A.

2016-12-01

The Clouds and the Earth's Radiant Energy System (CERES) satellite measures both solar-reflected and Earth-emitted radiation from the Earth's surface to the top of the atmosphere. One surface validation site is located at Chesapeake Light Station, approximately 25 kilometers east of Virginia Beach, Virginia (coordinates: 36.90N, 75.71W). In 1999, the CERES Ocean Validation Experiment (COVE) was established at Chesapeake Light Station. COVE is in its 17th year collecting radiometric and meteorological data. Other measurements over this time period include aerosol optical depth, water leaving radiance, precipitable water vapor and more. The issues we are trying to resolve for the upwelling flux are two-fold. First, there is the "shadow effect". In the morning, the shadow of the tower appears on the water in the field of view underneath the shortwave (SW) and longwave (LW) upwelling instruments. An attempt to understand the shading effect is made by separating the data into "shaded" and "unshaded" time periods using the Solar Azimuth (SA) angle. SA < 180 degrees are considered shaded, and SA > 180 degrees are considered unshaded. Upwelling SW shaded and unshaded datasets differ by a maximum of 9.5 W/m2 and a minimum of -0.7 W/m2 with the delta mean resulting in 3.6 W/m2. Upwelling LW shaded and unshaded datasets differ by a maximum of 8.0 W/m2 and a minimum of 1.0 W/m2 with the delta mean resulting in 3.7 W/m2. The second issue is the "tower radiating effect" which is especially noticeable on clear, sunny days. During these days, the tower tends to heat up and radiate extra heat energy that is measured by the LW instrument. We compare Infrared Radiation Thermometer (IRT) measurements to Precision Infrared Radiometer (PIR) measurements and make a case for using IRT measurements as upwelling LW.

Transport of terrigenous polycyclic aromatic hydrocarbons affected by the coastal upwelling in the northwestern coast of South China Sea.

PubMed

Ya, Miaolei; Wu, Yuling; Li, Yongyu; Wang, Xinhong

2017-10-01

Coastal upwelling prevails in the coast of Hainan Island, the northern South China Sea (SCS) during summer. We studied the influences of the upwelling on the horizontal and vertical transport of terrigenous polycyclic aromatic hydrocarbons (PAHs). PAHs in dissolved and suspended particulate phase of water samples were determined in the upper (depth < 1 m) and water column (depth > 10 m). PAH levels decreased sharply from inshore to offshore to open sea. The results showed that terrestrial input was the main source of coastal PAHs. Perylene, an important indicator of land plant-derived PAH, showed the significant correlation with PAHs (p < 0.005). This implied that fluvial transport was the primary pathway of terrigenous PAHs into the coast of northern SCS. Variations of the concentrations, compositions and diagnostic ratios of PAHs, accompanied the partition equilibrium in the water column, could indicate the selective degradation of PAHs by the plankton affected by upwelling. Different from the "traditional" transport pathway of PAHs in the water column (surface enrichment-depth depletion distribution), the upwelling could provide the original driver to elevate the upward diffusion of sediment entrained contaminants towards the intermediate even the upper waters. It could also enhance the outward diffusion of terrigenous PAHs accompanied by the offshore transport of the upper waters. Therefore, the transport pathway of PAHs can be summarized by the coastal upwelling rising PAHs with their subsequent transport offshore and settling in the adjacent open sea. Copyright © 2017 Elsevier Ltd. All rights reserved.

Oceanographic upwelling conditions influence signaling pathways involved in muscle growth of intertidal fish.

PubMed

Zuloaga, Rodrigo; Almarza, Oscar; Valdés, Juan A; Molina, Alfredo; Pulgar, José

2018-04-01

Few studies have addressed the impact of the upwelling oceanographical conditions on biological processes, such as growth, using a molecular and physiological approach. Upwelling conditions are characterized by low temperature seawater and high nutrient availability, which represents an ideal opportunity to understand how habitat modulates animal performance at different levels of biological complexity. We aimed to assess intraspecific variations in weight, oxygen consumption, protein content, and key signaling pathways involved in muscle-growth (protein kinase B (AKT) and extracellular signal-regulated kinase (ERK)) under experimental trials considering high/low seawater temperatures with full/restricted food rations. For this purpose, we studied Girella laevifrons, one of the most abundant fish species inhabiting rocky intertidal zones along the Eastern South Pacific coasts. Using fish obtained from upwelling (U) and non-upwelling (NU) zones, we reported that U animals displayed higher growth performance during both contrasting trials, with a weight gain (~3 g), lower oxygen consumption (~12%), and higher protein contents (~20%). Only ERK showed significant differences during the trials (~2-fold downregulation between NU and U fish). We also found that U fish increased protein ubiquitination in high water temperature and restricted food ration in contrast to NU fish. Our results help to elucidate how upwelling conditions may influence fish growth at physiological and molecular levels. Still, future analyses are necessary to improve the information regarding the impact of U and NU condition on animals, as well as the possible applications of this data in the aquaculture industry. Copyright © 2018 Elsevier Inc. All rights reserved.

Mindanao Dome variability over the last 160 kyr: Episodic glacial cooling of the West Pacific Warm Pool

NASA Astrophysics Data System (ADS)

Bolliet, Timothé; Holbourn, Ann; Kuhnt, Wolfgang; Laj, Carlo; Kissel, Catherine; Beaufort, Luc; Kienast, Markus; Andersen, Nils; Garbe-Schönberg, Dieter

2011-02-01

We present sea surface, upper thermocline, and benthic δ18O data, as well as temperature and paleoproductivity proxy data, from the International Marine Global Change Study Program (IMAGES) Core MD06-3067 (6°31‧N, 126°30‧E, 1575 m water depth), located in the western equatorial Pacific Ocean within the flow path of the Mindanao Current. Our records reveal considerable glacial-interglacial and suborbital variability in the Mindanao Dome upwelling over the last 160 kyr. Dome activity generally intensified during glacial intervals resulting in cooler thermocline waters, whereas it substantially declined during interglacials, in particular in the early Holocene and early marine oxygen isotope stage (MIS) 5e, when upwelling waters did not reach the thermocline. During MIS 3 and MIS 2, enhanced surface productivity together with remarkably low SST and low upper ocean thermal contrast provide evidence for episodic glacial upwelling to the surface, whereas transient surface warming marks periodic collapses of the Mindanao Dome upwelling during Heinrich events. We attribute the high variability during MIS 3 and MIS 2 to changes in the El Niño Southern Oscillation state that affected boreal winter monsoonal winds and upper ocean circulation. Glacial upwelling intensified when a strong cyclonic gyre became established, whereas El Niño-like conditions during Heinrich events tended to suppress the cyclonic circulation, reducing Ekman transport. Thus, our findings demonstrate that variations in the Mindanao Dome upwelling are closely linked to the position and intensity of the tropical convection and also reflect far-field influences from the high latitudes.

Changes in monsoon-driven upwelling in the South China Sea over glacial Terminations I and II: a multi-proxy record

NASA Astrophysics Data System (ADS)

Sadatzki, Henrik; Sarnthein, Michael; Andersen, Nils

2016-06-01

Upwelling intensity in the South China Sea has changed over glacial-interglacial cycles in response to orbital-scale changes in the East Asian Monsoon. Here, we evaluate new multi-proxy records of two sediment cores from the north-eastern South China Sea to uncover millennial-scale changes in winter monsoon-driven upwelling over glacial Terminations I and II. On the basis of U/Th-based speleothem chronology, we compare these changes with sediment records of summer monsoon-driven upwelling east of South Vietnam. Ocean upwelling is traced by reduced (UK'37-based) temperature and increased nutrient and productivity estimates of sea surface waters (δ13C on planktic foraminifera, accumulation rates of alkenones, chlorins, and total organic carbon). Accordingly, strong winter upwelling occurred north-west of Luzon (Philippines) during late Marine Isotope Stage 6.2, Heinrich (HS) and Greenland stadials (GS) HS-11, GS-26, GS-25, HS-1, and the Younger Dryas. During these stadials, summer upwelling decreased off South Vietnam and sea surface salinity reached a maximum suggesting a drop in monsoon rains, concurrent with speleothem records of aridity in China. In harmony with a stadial-to-interstadial see-saw pattern, winter upwelling off Luzon in turn was weak during interstadials, in particular those of glacial Terminations I and II, when summer upwelling culminated east of South Vietnam. Most likely, this upwelling terminated widespread deep-water stratification, coeval with the deglacial rise in atmospheric CO2. Yet, a synchronous maximum in precipitation fostered estuarine overturning circulation in the South China Sea, in particular as long as the Borneo Strait was closed when sea level dropped below -40 m.

Life cycle strategies of copepods in coastal upwelling zones

NASA Astrophysics Data System (ADS)

Peterson, W.

1998-06-01

Life cycles of copepods of coastal upwelling zones are of the multigenerational type—as many as 10 or more generations may be produced each year, depending upon water temperature, food concentration and length of the upwelling season. Abundant food resources and moderate temperature convey advantages to those copepods living in coastal upwelling zones, however, there is a clear disadvantage in that coastal upwelling zones are highly advective environments. Typically, water circulation patterns are such that surface waters are carried offshore, deeper waters carried onshore and most of the water column over the continental shelf is moving equatorward. The challenge to copepod species that inhabit upwelling systems is life cycle closure—how do eggs, nauplii, juveniles and adults avoid being swept out of these ecosystems in the face of persistent transport out of the system? In this review, I first list the species which dominate coastal upwelling ecosystems then discuss three variations on the multigenerational life cycle scheme that are observed in upwelling systems. The latter part of the review is devoted to discussion of how individuals are retained in the productive continental shelf waters within coastal upwelling ecosystems. The suggestion is made that the only copepod species that successfully achieve life cycle closure in such systems are those that are preadapted to upwelling circulation patterns. Our quantitative understanding of the relative importance of physical factors (such as advection) and biological factors (birth, growth, and mortality) on life cycle strategies and population dynamics is quite rudimentary. It would help our understanding if there were more field studies and more computer modeling studies that focused on seasonal cycles of abundance, development times and vertical distribution of life cycle stages, and measurements of water circulation patterns.

The role of Southern Ocean mixing and upwelling in glacial-interglacial atmospheric CO2 change

NASA Astrophysics Data System (ADS)

Watson, Andrew J.; Naveira Garabato, Alberto C.

2006-02-01

Decreased ventilation of the Southern Ocean in glacial time is implicated in most explanations of lower glacial atmospheric CO2. Today, the deep (>2000 m) ocean south of the Polar Front is rapidly ventilated from below, with the interaction of deep currents with topography driving high mixing rates well up into the water column. We show from a buoyancy budget that mixing rates are high in all the deep waters of the Southern Ocean. Between the surface and ~2000 m depth, water is upwelled by a residual meridional overturning that is directly linked to buoyancy fluxes through the ocean surface. Combined with the rapid deep mixing, this upwelling serves to return deep water to the surface on a short time scale. We propose two new mechanisms by which, in glacial time, the deep Southern Ocean may have been more isolated from the surface. Firstly, the deep ocean appears to have been more stratified because of denser bottom water resulting from intense sea ice formation near Antarctica. The greater stratification would have slowed the deep mixing. Secondly, subzero atmospheric temperatures may have meant that the present-day buoyancy flux from the atmosphere to the ocean surface was reduced or reversed. This in turn would have reduced or eliminated the upwelling (contrary to a common assumption, upwelling is not solely a function of the wind stress but is coupled to the air-sea buoyancy flux too). The observed very close link between Antarctic temperatures and atmospheric CO2 could then be explained as a natural consequence of the connection between the air-sea buoyancy flux and upwelling in the Southern Ocean, if slower ventilation of the Southern Ocean led to lower atmospheric CO2. Here we use a box model, similar to those of previous authors, to show that weaker mixing and reduced upwelling in the Southern Ocean can explain the low glacial atmospheric CO2 in such a formulation.

Atmosphere-ocean feedbacks in a coastal upwelling system

NASA Astrophysics Data System (ADS)

Alves, J. M. R.; Peliz, A.; Caldeira, R. M. A.; Miranda, P. M. A.

2018-03-01

The COAWST (Coupled Ocean-Atmosphere-Wave-Sediment Transport) modelling system is used in different configurations to simulate the Iberian upwelling during the 2012 summer, aiming to assess the atmosphere-ocean feedbacks in the upwelling dynamics. When model results are compared with satellite measurements and in-situ data, two-way coupling is found to have a moderate impact in data-model statistics. A significant reinforcement of atmosphere-ocean coupling coefficients is, however, observed in the two-way coupled run, and in the WRF and ROMS runs forced by previously simulated SST and wind fields, respectively. The increasing in the coupling coefficient is associated with slight, but potentially important changes in the low-level coastal jet in the atmospheric marine boundary layer. While these results do not imply the need for fully coupled simulations in many applications, they show that in seasonal numerical studies such simulations do not degrade the overall model performance, and contribute to produce better dynamical fields.

Sensitivity analysis of upwelling thermal radiance in presence of clouds

NASA Technical Reports Server (NTRS)

Subramanian, S. V.; Tiwari, S. N.; Suttles, J. T.

1981-01-01

Total upwelling radiance at the top of the atmosphere is evaluated theoretically in the presence of clouds. The influence of cloud heights, thicknesses and different cloud covers on the upwelling radiance is also investigated. The characteristics of the two cloud types considered in this study closely correspond to altocumulus and cirrus with the cloud emissivity as a function of its liquid water (or ice) content. For calculation of the integrated transmittance of atmospheric gases such as, H2O, CO2, O3, and N2O, the Quasi Random Band (QRB) model approach is adopted. Results are obtained in three different spectral ranges and are compared with the clearsky radiance results. It is found that the difference between the clearsky and cloudy radiance increases with increasing cloud height and liquid water content. This difference also decreases as the surface temperature approaches the value of the cloud top temperature.

Three-Dimensional Spherical Models of Convection in the Earth's Mantle.

PubMed

Bercovici, D; Schubert, G; Glatzmaier, G A

1989-05-26

Three-dimensional, spherical models of mantle convection in the earth reveal that upwelling cylindrical plumes and downwelling planar sheets are the primary features of mantle circulation. Thus, subduction zones and descending sheetlike slabs in the mantle are fundamental characteristics of thermal convection in a spherical shell and are not merely the consequences of the rigidity of the slabs, which are cooler than the surrounding mantle. Cylindrical mantle plumes that cause hotspots such as Hawaii are probably the only form of active upwelling and are therefore not just secondary convective currents separate from the large-scale mantle circulation. Active sheetlike upwellings that could be associated with mid-ocean ridges did not develop in the model simulations, a result that is in agreement with evidence suggesting that ridges are passive phenomena resulting from the tearing of surface plates by the pull of descending slabs.

The phytoplankton bloom in the northwestern Arabian Sea during the southwest monsoon of 1979

NASA Technical Reports Server (NTRS)

Brock, John C.; Mcclain, Charles R.; Luther, Mark E.; Hay, William W.

1991-01-01

The present study investigates the biological variability of the northwestern Arabian Sea during the 1979 southwest monsoon by the synthesis of satellite ocean color remote sensing with an analysis of in situ hydrographic and meteorological data sets and the results of wind-driven modeling of upper-ocean circulation. The phytoplankton bloom peaked during August-September, extended from the Oman coast to about 65 deg E, and lagged behind the development of open-sea upwelling by at least 1 mo. The pigment distributions, hydrographic data, and model results all suggest that the boom was driven by spatially distinct upward nutrient fluxes to the euphotic zone forced by the physical processes of coastal upwelling and offshore Ekman pumping. Coastal upwelling was evident from May through September, yielded the most extreme concentrations of phytoplankton biomass, and, along the Arabian coast, was limited to the continental shelf in the promotion of high concentrations of phytoplankton.

(abstract) Seasonal Variability in Coastal Upwelling: A Comparison of Four Coastal Upwelling Sites from Space

NASA Technical Reports Server (NTRS)

Carr, Mary-Elena

1996-01-01

Coastal upwelling of subsurface nutrient-rich water occurs along the eastern boundary of the ocean basins and leads to high primary production and fish catches. In this study satellite observations are used to compare the seasonal cycle in wind forcing and in the oceanic and biological response of the major coastal upwelling regions associated with the Canary, Benguela, California, and Humboldt Currents.

Narrowing of the Upwelling Branch of the Brewer-Dobson Circulation and Hadley Cell in Chemistry-Climate Model Simulations of the 21st Century

NASA Technical Reports Server (NTRS)

Li, Feng; Stolarski, Richard S.; Pawson, Steven; Newman, Paul A.; Waugh, Darryn

2010-01-01

Changes in the width of the upwelling branch of the Brewer-Dobson circulation and Hadley cell in the 21st Century are investigated using simulations from a coupled chemistry-climate model. In these model simulations the tropical upwelling region narrows in the troposphere and lower stratosphere. The narrowing of the Brewer-Dobson circulation is caused by an equatorward shift of Rossby wave critical latitudes and Eliassen-Palm flux convergence in the subtropical lower stratosphere. In the troposphere, the model projects an expansion of the Hadley cell's poleward boundary, but a narrowing of the Hadley rising branch. Model results suggest that the narrowing of the Hadley cell ascent is also eddy-driven.

Reconstruction of the Mesoscale Velocity Shear Seaward of Coastal Upwelling Regions from the Refraction of the Surface Wave Field

NASA Technical Reports Server (NTRS)

Flament, Pierre; Graber, Hans C.; Halpern, D.; Holt, B.

1996-01-01

The objective of this project is to study fronts that develop at the boundary between cold water recently upwelled to the surface through Ekman divergence, and warmer surrounding waters. This specific objective was suggested by studying the small scale structure of upwelling fronts (coastal, island, and equatorial) through shipboard surveys and infrared satellite images. Constraints on the shuttle equator crossing imposed by other land sites precluded a coverage of the area targeted in the initial SIR-C proposal, the California Current. The site was then relocated to the Equatorial Pacific upwelling tongue, that can be satisfactorily imaged for a wide range of longitudes of the equator crossing. Some limited data was nevertheless obtained over coastal upwelling off California in 1989, using the JPL AIRSAR in multifrequency mode, and over island upwelling off Hawaii in 1990, using the radar in along-track interferometric mode.

Lamp automatically switches to new filament on burnout

NASA Technical Reports Server (NTRS)

Ingle, W. B.

1966-01-01

Lamp with primary and secondary filaments has a means for automatic switching to the secondary filament at primary filament burnout. Lamp failures and resultant expenses during oscillograph printing are appreciably reduced.

Organic carbon fluxes in the Atlantic and the Southern Ocean: relationship to primary production compiled from satellite radiometer data

NASA Astrophysics Data System (ADS)

Fischer, G.; Ratmeyer, V.; Wefer, G.

Fluxes of organic carbon normalised to a depth of 1000 m from 18 sites in the Atlantic and the Southern Ocean are presented, comprising nine biogeochemical provinces as defined by Longhurst et al. (1995. Journal of Plankton Research 17, 1245-1271). For comparison with primary production, we used a recent compilation of primary production values derived from CZCS data (Antoine et al., 1996. Global Biogeochemical Cycles 10, 57-69). In most cases, the seasonal patterns stood reasonably well in accordance with the carbon fluxes. Particularly, organic carbon flux records from two coastal sites off northwest and southwest Africa displayed a more distinct correlation to the primary production in sectors (1×1°) which are situated closer to the coastal environments. This was primarily caused by large upwelling filaments streaming far offshore, resulting in a cross-shelf carbon transport. With respect to primary production, organic carbon export to a water depth of 1000 m, and the fraction of primary production exported to a depth of 1000 m (export fraction=EF 1000), we were able to distinguish between: (1) the coastal environments with highest values (EF 1000=1.75-2.0%), (2) the eastern equatorial upwelling area with moderately high values (EF 1000=0.8-1.1%), (3) and the subtropical oligotrophic gyres that yielded lowest values (EF 1000=0.6%). Carbon export in the Southern Ocean was low to moderate, and the EF 1000 value seems to be quite low in general. Annual organic carbon fluxes were proportional to primary production, and the export fraction EF 1000 increased with primary production up to 350 gC m -2 yr-1. Latitudinal variations in primary production were reflected in the carbon flux pattern. A high temporal variability of primary production rates and a pronounced seasonality of carbon export were observed in the polar environments, in particular in coastal domains, although primary production (according to Antoine et al., 1996. Global Biogeochemical Cycles 10, 57-69), carbon fluxes, and the export fraction remained at low.

Why coastal upwelling is expected to increase along the western Iberian Peninsula over the next century?

PubMed

Sousa, Magda Catarina; deCastro, Maite; Alvarez, Ines; Gomez-Gesteira, Moncho; Dias, João Miguel

2017-08-15

Former studies about coastal upwelling along the Western Iberian Peninsula (WIP) using historical data indicated contradictory results, showing either its strengthening or reduction, while previous studies using Global Climate Models (GCMs) indicated that global warming is likely to intensify this phenomenon although predicting different rates and not justifying the patterns found. Taking advantage of the recent high spatial resolution Regional Climate Models (RCMs) projections from EURO-CORDEX project (Representative Concentration Pathway, RCP 8.5), detailed higher accuracy estimations of the spatio-temporal trends of Upwelling Index (UI) along the WIP coast were performed in this study, integrating the coastal mesoscale effects within the framework of climate change. Additionally, this research brings new insights about the origin of the WIP coastal upwelling intensification over the next century. These new projections clarified the upwelling strengthening rates predicted along the coast of the WIP from 2006 to 2099 revealing more prominent changes in the northern limit of the region (25-30m 3 s -1 km -1 per decade between 41.5 and 42.5°N). Trends observed at high latitudes of the region were found to be induced by the displacement of the Azores High, which will intensify (0.03hPa per decade) and drift northeastward (10km per decade) during the 21st century. Copyright © 2017 Elsevier B.V. All rights reserved.

Mantle upwellings and convective instabilities revealed by seismic tomography and helium isotope geochemistry beneath eastern Africa

NASA Astrophysics Data System (ADS)

Montagner, Jean-Paul; Marty, Bernard; Stutzmann, Eléonore; Sicilia, Déborah; Cara, Michel; Pik, Raphael; Lévêque, Jean-Jacques; Roult, Geneviève; Beucler, Eric; Debayle, Eric

2007-11-01

The relationship between intraplate volcanism and continental tectonics has been investigated for North and East Africa using a high resolution three-dimensional anisotropic tomographic model derived from seismic data of a French experiment ``Horn of Africa'' and existing broadband data. The joint inversion for seismic velocity and anisotropy of the upper 400 km of the mantle, and geochemical data reveals a complex interaction between mantle upwellings, and lithosphere. Two kinds of mantle upwellings can be distinguished: The first one, the Afar ``plume'' originates from deeper than 400 km and is characterized by enrichment in primordial 3He and 3He/4He ratios higher than those along mid-ocean ridges (MOR). The second one, associated with other Cenozoic volcanic provinces (Darfur, Tibesti, Hoggar, Cameroon), with 3He/4He ratios similar to, or lower than MOR, is a consequence of shallower upwelling. The presumed asthenospheric convective instabilities are oriented in an east-west direction, resulting from interaction between south-north asthenospheric mantle flow, main plume head and topography on the base of lithosphere.

Impact of Indian ocean dipole on the coastal upwelling features off the southwest coast of India

NASA Astrophysics Data System (ADS)

Nigam, Tanuja; Pant, Vimlesh; Prakash, Kumar Ravi

2018-05-01

A three-dimensional regional ocean model is used to examine the impact of positive Indian ocean dipole (pIOD) events on the coastal upwelling features at the southwest coast of India (SWCI). Two model experiments are carried out with different surface boundary conditions that prevailed in the normal and pIOD years from 1982 to 2010. Model experiments demonstrate the weakening of coastal upwelling at the SWCI in the pIOD years. The reduced southward meridional wind stress off the SWCI leads to comparatively lower offshore Ekman transport during August-October in the pIOD years to that in normal years. The suppressed coastal upwelling results in warmer sea surface temperature and deeper thermocline in the pIOD years during June-September. The offshore spatial extent of upwelled colder (< 22 °C) water was up to 75.5° E in August-September in normal years that was limited up to 76.2° E in pIOD years. The heat budget analysis reveals the decreased contribution of vertical entrainment process to the mixed layer cooling in pIOD years which is almost half of that of normal years in October. The net heat flux term shows warming tendency during May-November with a higher magnitude (+ 0.4 °C day-1) in normal years than pIOD years (+ 0.28 °C day-1). The biological productivity is found to reduce during the pIOD years as the concentration of phytoplankton and zooplankton decreases over the region of coastal upwelling at SWCI. Nitrate concentration in the pIOD years dropped by half during August-September and dropped by an order of magnitude in October as compared to its ambient concentration of 13 μmol L-1 in normal years.

Impact of Indian ocean dipole on the coastal upwelling features off the southwest coast of India

NASA Astrophysics Data System (ADS)

Nigam, Tanuja; Pant, Vimlesh; Prakash, Kumar Ravi

2018-06-01

A three-dimensional regional ocean model is used to examine the impact of positive Indian ocean dipole (pIOD) events on the coastal upwelling features at the southwest coast of India (SWCI). Two model experiments are carried out with different surface boundary conditions that prevailed in the normal and pIOD years from 1982 to 2010. Model experiments demonstrate the weakening of coastal upwelling at the SWCI in the pIOD years. The reduced southward meridional wind stress off the SWCI leads to comparatively lower offshore Ekman transport during August-October in the pIOD years to that in normal years. The suppressed coastal upwelling results in warmer sea surface temperature and deeper thermocline in the pIOD years during June-September. The offshore spatial extent of upwelled colder (< 22 °C) water was up to 75.5° E in August-September in normal years that was limited up to 76.2° E in pIOD years. The heat budget analysis reveals the decreased contribution of vertical entrainment process to the mixed layer cooling in pIOD years which is almost half of that of normal years in October. The net heat flux term shows warming tendency during May-November with a higher magnitude (+ 0.4 °C day-1) in normal years than pIOD years (+ 0.28 °C day-1). The biological productivity is found to reduce during the pIOD years as the concentration of phytoplankton and zooplankton decreases over the region of coastal upwelling at SWCI. Nitrate concentration in the pIOD years dropped by half during August-September and dropped by an order of magnitude in October as compared to its ambient concentration of 13 μmol L-1 in normal years.

Diatoms as a paleoproductivity proxy in the NW Iberian coastal upwelling system (NE Atlantic)

NASA Astrophysics Data System (ADS)

Zúñiga, Diana; Santos, Celia; Froján, María; Salgueiro, Emilia; Rufino, Marta M.; De la Granda, Francisco; Figueiras, Francisco G.; Castro, Carmen G.; Abrantes, Fátima

2017-03-01

The objective of the current work is to improve our understanding of how water column diatom's abundance and assemblage composition is seasonally transferred from the photic zone to seafloor sediments. To address this, we used a dataset derived from water column, sediment trap and surface sediment samples recovered in the NW Iberian coastal upwelling system. Diatom fluxes (2.2 (±5.6) 106 valves m-2 d-1) represented the majority of the siliceous microorganisms sinking out from the photic zone during all studied years and showed seasonal variability. Contrasting results between water column and sediment trap diatom abundances were found during downwelling periods, as shown by the unexpectedly high diatom export signals when diatom-derived primary production achieved their minimum levels. They were principally related to surface sediment remobilization and intense Minho and Douro river discharge that constitute an additional source of particulate matter to the inner continental shelf. In fact, contributions of allochthonous particles to the sinking material were confirmed by the significant increase of both benthic and freshwater diatoms in the sediment trap assemblage. In contrast, we found that most of the living diatom species blooming during highly productive upwelling periods were dissolved during sinking, and only those resistant to dissolution and the Chaetoceros and Leptocylindrus spp. resting spores were susceptible to being exported and buried. Furthermore, Chaetoceros spp. dominate during spring-early summer, when persistent northerly winds lead to the upwelling of nutrient-rich waters on the shelf, while Leptocylindrus spp. appear associated with late-summer upwelling relaxation, characterized by water column stratification and nutrient depletion. These findings evidence that the contributions of these diatom genera to the sediment's total marine diatom assemblage should allow for the reconstruction of different past upwelling regimes.

Microplankton biomass and diversity in the Vietnamese upwelling area during SW monsoon under normal conditions and after an ENSO event

NASA Astrophysics Data System (ADS)

Loick-Wilde, Natalie; Bombar, Deniz; Doan, Hai Nhu; Nguyen, Lam Ngoc; Nguyen-Thi, Anh Mai; Voss, Maren; Dippner, Joachim W.

2017-04-01

Investigating microplankton biomass and diversity under different climatological conditions is key to the understanding of cascading effects of climate change on nutrient cycles and biological productivity. Here we have used data collected during two contrasting summers along the coast of Viet Nam to show how climatological-driven changes can have a significant influence on the distribution of microplankton communities and their biomass via its impact on nutrient concentrations in the water column. The first summer in July 2003 followed a weak El-Nino Southern Oscillation (ENSO) event and was characterized by weak coastal upwelling, in the second summer during July 2004, upwelling was normal. Very low silicate (SiO4) concentrations and SiO4:DIN ratios characterized the source water mass for upwelling in July 2004, and dynamic SiO4 to dissolved inorganic nitrogen ratios (SiO4:DIN) mainly below the Redfield-Brzezinski ratio and DIN to phosphate ratios (DIN:PO43-) below the Redfield ratio were a common feature off Viet Nam. Much higher particle concentrations and PSi/PC ratios during normal upwelling revealed major changes in the microplankton community structure among summers. Small dinoflagellates (10-20 μm) prevailed ubiquitously during reduced upwelling. During normal upwelling, the diatom Rhizosolenia sp. dominated the cell-carbon biomass in the silicate poor upwelling waters. Trichodesmium erythraeum dominated in the Mekong-influenced and nutrient depleted offshore waters, where it co-occurred with Rhizosolenia sp. Both species were directly associated with the much higher primary production (PP) and N2 fixation rates that were quantified in earlier studies, as well as with much higher diversities at these offshore sites. Along the coast, the correlation between Rhizosolenia sp. and PP rates was less clear and the factors regulating the biomass of Rhizosolenia sp. in the upwelling waters are discussed. The very low silicate concentrations in the source water mass for upwelling and the offshore deflection of the Mekong river plume likely triggered the observed ecological differences in the microplankton communities off Viet Nam in the normal upwelling season compared to the post ENSO conditions.

Interactions between trophic levels in upwelling and non-upwelling regions during summer monsoon

NASA Astrophysics Data System (ADS)

Malik, A.; Fernandes, C. E. G.; Gonsalves, M.-J. B. D.; Subina, N. S.; Mamatha, S. S.; Krishna, K.; Varik, S.; Kumari, R.; Gauns, M.; Cejoice, R. P.; Pandey, S. S.; Jineesh, V. K.; Kamaleson, A. S.; Vijayan, V.; Mukherjee, I.; Subramanyan, S.; Nair, S.; Ingole, B.; LokaBharathi, P. A.

2015-01-01

Coastal upwelling is a regular phenomenon occurring along the southwest coast of India during summer monsoon (May-September). We hypothesize that there could be a shift in environmental parameters along with changes in the network of interactions between bacteria, phytoplankton, and zooplankton in upwelling and non-upwelling regions. During cruise # 267 on FORV Sagar Sampada, water samples were analysed for environmental and biological parameters from two transects, one upwelling region off Trivandrum (TVM) (8°26‧N, 76°20‧E-8°30‧N, 76°50‧E), and the other non-upwelling region off Calicut (CLT) (11°11‧N, 75°30‧E-11°14‧N,74°54‧E), about 230 nmi to the north. Meteorological, hydrological, and nutrient profiles confirmed upwelling off TVM. Bacteria, phytoplankton and zooplankton significantly responded. Primary and bacterial productivity enhanced together with increase in the percentage of viable bacteria (TVC). Pearson's correlation analysis pointed out the differences in bacterial interactions with other trophic levels at both transects. TVC played a prominent role in trophic interactions off TVM by depending on phytoplankton for substrate (r = 0.754). This contrasted with CLT where total counts (TC) played an important role. However, most interrelationships were less pronounced. Principal component analysis (PCA) confirmed the correlation analysis and further showed that the factor loadings of the biotic and abiotic parameters differed in strength and direction in the two regions. More importantly, the processes of mineralization by bacteria and uptake by phytoplankton are obviously more coupled off TVM as evidenced by the clustering of the related parameters in the PCA biplot. Canonical correspondence analysis also complements these findings and demonstrated that the abiotic factors influenced phytoplankton and bacteria similarly at TVM but differently at CLT. The impact on the trophic interrelationships is evident by the close association between all the variables in upwelling waters. Besides, bacteria may represent a more stable element in the food web, TVC for upwelling region and TC for non-upwelling region.

The JCMT Gould Belt Survey: properties of star-forming filaments in Orion A North

NASA Astrophysics Data System (ADS)

Salji, C. J.; Richer, J. S.; Buckle, J. V.; di Francesco, J.; Hatchell, J.; Hogerheijde, M.; Johnstone, D.; Kirk, H.; Ward-Thompson, D.; JCMT GBS Consortium

2015-05-01

We develop and apply a Hessian-based filament detection algorithm to submillimetre continuum observations of Orion A North. The resultant filament radial density profiles are fitted with beam-convolved line-of-sight Plummer-profiles using Markov chain Monte Carlo techniques. The posterior distribution of the radial decay parameter demonstrates that the majority of filaments exhibit p = 1.5-3, with a mode at p = 2.2, suggesting deviation from the Ostriker p = 4 isothermal, equilibrium, self-gravitating cylinder. The spatial distribution of young stellar objects relative to the high column density filaments is investigated, yielding a lower limit on the star-forming age of the integral-shaped filament ˜1.4 Myr. Additionally, inferred lifetimes of filaments are examined which suggest long-term filament accretion, varying rates of star formation, or both. Theoretical filament stability measures are determined with the aid of HARP C18O J = 3-2 observations and indicate that the majority of filaments are gravitationally subcritical, despite the presence of young protostars. The results from this investigation are consistent with the one-dimensional accretion flow filament model recently observed in numerical simulations.

Stereoscopic Analysis of 19 May and 31 Aug 2007 Filament Eruptions

NASA Technical Reports Server (NTRS)

Liewer, Paulett; DeJong, E. M.; Hall, J. R.

2008-01-01

The presentation outline includes results from stereoscopic analysis of SECCHI/EUVI data for 19 May 2007 filament eruption, including the determined 3D trajectory of erupting filament, strong evidence for reconnection below erupting filament as consistent with standard model, and comparison of EUVI and H-alpha images during eruption; and results from stereoscopic analytic of 21 August 2007 filament eruption. Slide topics include standard model of filament eruption; 2007 May 19 STEREO A/SECCHI/EUVI 195 and 304 A: CME signatures and filament eruption, 3D reconstruction of erupting prominence; filament's relation to coronal magnetic fields; 3d reconstructions of filament eruption; height-time plot of eruption from 3D reconstructions; detailed pre-eruptions comparison of H-alpha and EUVI 304 at 12:42 UT; comparisons during the eruption; STEREO prominence and CME August 31, 2007; reconstructions of prominence and leading edges of both dark cavity and CME; and 3D reconstructions of prominence and leading edges.

Summertime sea surface temperature fronts associated with upwelling around the Taiwan Bank

NASA Astrophysics Data System (ADS)

Lan, Kuo-Wei; Kawamura, Hiroshi; Lee, Ming-An; Chang, Yi; Chan, Jui-Wen; Liao, Cheng-Hsin

2009-04-01

It is well known that upwelling of subsurface water is dominant around the Taiwan Bank (TB) and the Penghu (PH) Islands in the southern Taiwan Strait in summertime. Sea surface temperature (SST) frontal features and related phenomena around the TB upwelling and the PH upwelling were investigated using long-term AVHRR (1996-2005) and SeaWiFS (1998-2005) data received at the station of National Taiwan Ocean University. SST and chlorophyll-a (Chl-a) images with a spatial resolution of 0.01° were generated and used for the monthly SST and Chl-a maps. SST fronts were extracted from each SST images and gradient magnitudes (GMs); the orientations were derived for the SST fronts. Monthly maps of cold fronts where the cooler SSTs were over a shallower bottom were produced from the orientation. Areas with high GMs (0.1-0.2 °C/km) with characteristic shapes appeared at geographically fixed positions around the TB/PH upwelling region where SSTs were lower than the surrounding waters. The well-shaped high GMs corresponded to cold fronts. Two areas with high Chl-a were found around the TB and PH Islands. The southern border of the high-Chl-a area in the TB upwelling area was outlined by the high-GM area. Shipboard measurements of snapshot vertical sections of temperature (T) and salinity (S) along the PH Channel showed a dome structure east of PH Islands, over which low SST and high GM in the maps of the corresponding month were present. Clear evidence of upwelling (vertically uniform distributions of T and S) was indicated at the TB edge in the T and S sections close to TB upwelling. This case of upwelling may be caused by bottom currents ascending the TB slope as pointed out by previous studies. The position of low SSTs in the monthly maps matched the upwelling area, and the high GMs corresponded to the area of eastern surface fronts in the T/S sections.

Potential new production in two upwelling regions of the western Arabian Sea: Estimation and comparison

NASA Astrophysics Data System (ADS)

Liao, Xiaomei; Zhan, Haigang; Du, Yan

2016-07-01

Using satellite-derived and in situ data, the wind-driven potential new production (nitrate supply) for the 300 km wide coastal band in two upwelling regions of the western Arabian Sea (AS) during the southwest monsoon is estimated. The upward nitrate flux to the euphotic zone is generally based on the physical processes of coastal transport (Ekman transport and geostrophic transport) and offshore Ekman pumping. The coastal geostrophic current in the western AS influences the upwelling intensity and latitudinal distributions of nitrate supply. The Oman and Somalia upwelling regions have similar level of potential new production (nitrate supply) during the summer monsoon, while the satellite estimates of primary production off Oman are 2 times greater than those off Somalia. The much higher potential f-ratio in the Somalia upwelling region indicates that the primary production could be limited by availability of other macronutrients (e.g., silicate). The correlation analysis of the primary production and the aerosol optical thickness shows that the Oman upwelling region displays a stronger coupling between the atmospheric deposition and the phytoplankton abundance. The high summertime dust levels in the atmosphere are suggested to contribute to the high primary production in the Oman upwelling region.

Intensification of Chile-Peru upwelling under climate change: diagnosing the impact of natural and anthropogenic forcing from the IPSL-CM5 model.

NASA Astrophysics Data System (ADS)

Jebri, B.; Khodri, M.; Gastineau, G.; Echevin, V.; Thiria, S.

2017-12-01

Upwelling is critical to the biological production, acidification, and deoxygenation of the ocean's major eastern boundary current ecosystems. A conceptual hypothesis suggests that the winds that favour coastal upwelling intensify with anthropogenic global warming due to increased land-sea temperature contrast. We examine this hypothesis for the dynamics of the Peru-Chile upwelling using a set of four large ensembles of coupled, ocean-atmosphere model simulations with the IPSL model covering the 1940-2014 period. In one large ensemble we prescribe the standard CMIP5 greenhouse gas (GHG) concentrations, anthropogenic aerosol, ozone and volcanic forcings, following the historical experiments through 2005 and RCP8.5 from 2006-2014, while the other ensembles consider separately the GHG, ozone and volcanic forcings. We find evidence for intensification of upwelling-favourable winds with however little evidence of atmospheric pressure gradients in response to increasing land-sea temperature differences. Our analyses reveal poleward migration and intensification of the South Pacific Anticyclone near poleward boundaries of climatological Peruvian and Chilean upwelling zones. This contribution further investigates the physical mechanisms for the Peru-Chile upwelling intensification and the relative role of natural and anthropogenic forcings.

Assessing the Feasibility and Risks of Using Wave-Driven Upwelling Pumps to Enhance the Biological Sequestration of Carbon in Open Oceans

NASA Astrophysics Data System (ADS)

White, A.; Bjorkman, K.; Grabowski, E.; Letelier, R. M.; Poulos, S.; Watkins, B.; Karl, D. M.

2008-12-01

In 1976, John D. Isaacs proposed to use wave energy to pump cold and nutrient-rich deep water into the sunlit surface layers. The motivation for this endeavor has taken many forms over the years, from energy production to fueling aquaculture to the more recent suggestion that artificial upwelling could be used to stimulate primary productivity and anthropogenic carbon sequestration in oligotrophic regions of the ocean. However, the potential for biological carbon sequestration in response to upwelling will depend on the concentration of nutrients relative to that of dissolved inorganic carbon in the water being upwelled and on the response of the marine microbial assemblage to this nutrient enrichment. In June 2008, we tested a commercially available wave pump in the vicinity of Station ALOHA, north of Oahu, Hawaii in order to assess the logistics of at-sea deployment and the survivability of the equipment in the open ocean. Our engineering test was also designed to evaluate a recently published hypothesis (Karl and Letelier, 2008, Marine Ecology Progress Series) that upwelling of water containing excess phosphate relative to nitrogen compared to the canonical "Redfield" molar ratio of 16N:1P, would generate a two-phased phytoplankton bloom and enhance carbon sequestration. In this presentation, we analyze the results of this field test within the context of pelagic biogeochemical cycles. Furthermore, we discuss the deployment of a 300m wave pump, efforts to sample a biochemical response, the engineering challenges faced and the practical and ethical implications of these results for future experiments aimed at stimulating the growth of phytoplankton in oligotrophic regions.

Cold cratonic roots and thermal blankets: How continents affect mantle convection

USGS Publications Warehouse

Trubitsyn, V.P.; Mooney, W.D.; Abbott, D.H.

2003-01-01

Two-dimensional convection models with moving continents show that continents profoundly affect the pattern of mantle convection. If the continents are wider than the wavelength of the convection cells (???3000 km, the thickness of the mantle), they cause neighboring deep mantle thermal upwellings to coalesce into a single focused upwelling. This focused upwelling zone will have a potential temperature anomaly of about 200??C, much higher than the 100??C temperature anomaly of upwelling zones generated beneath typical oceanic lithosphere. Extensive high-temperature melts (including flood basalts and late potassic granites) will be produced, and the excess temperature anomaly will induce continental uplift (as revealed in sea level changes) and the eventual breakup of the supercontinent. The mantle thermal anomaly will persist for several hundred million years after such a breakup. In contrast, small continental blocks (<1000 km diameter) do not induce focused mantle upwelling zones. Instead, small continental blocks are dragged to mantle downwelling zones, where they spend most of their time, and will migrate laterally with the downwelling. As a result of sitting over relatively cold mantle (downwellings), small continental blocks are favored to keep their cratonic roots. This may explain the long-term survival of small cratonic blocks (e.g., the Yilgarn and Pilbara cratons of western Australia, and the West African craton). The optimum size for long-term stability of a continental block is <3000 km. These results show that continents profoundly affect the pattern of mantle convection. These effects are illustrated in terms of the timing and history of supercontinent breakup, the production of high-temperature melts, and sea level changes. Such two-dimensional calculations can be further refined and tested by three-dimensional numerical simulations of mantle convection with moving continental and oceanic plates.

Thick filament mechano-sensing is a calcium-independent regulatory mechanism in skeletal muscle.

PubMed

Fusi, L; Brunello, E; Yan, Z; Irving, M

2016-10-31

Recent X-ray diffraction studies on actively contracting fibres from skeletal muscle showed that the number of myosin motors available to interact with actin-containing thin filaments is controlled by the stress in the myosin-containing thick filaments. Those results suggested that thick filament mechano-sensing might constitute a novel regulatory mechanism in striated muscles that acts independently of the well-known thin filament-mediated calcium signalling pathway. Here we test that hypothesis using probes attached to the myosin regulatory light chain in demembranated muscle fibres. We show that both the extent and kinetics of thick filament activation depend on thick filament stress but are independent of intracellular calcium concentration in the physiological range. These results establish direct control of myosin motors by thick filament mechano-sensing as a general regulatory mechanism in skeletal muscle that is independent of the canonical calcium signalling pathway.

Thick filament mechano-sensing is a calcium-independent regulatory mechanism in skeletal muscle

PubMed Central

Fusi, L.; Brunello, E.; Yan, Z.; Irving, M.

2016-01-01

Recent X-ray diffraction studies on actively contracting fibres from skeletal muscle showed that the number of myosin motors available to interact with actin-containing thin filaments is controlled by the stress in the myosin-containing thick filaments. Those results suggested that thick filament mechano-sensing might constitute a novel regulatory mechanism in striated muscles that acts independently of the well-known thin filament-mediated calcium signalling pathway. Here we test that hypothesis using probes attached to the myosin regulatory light chain in demembranated muscle fibres. We show that both the extent and kinetics of thick filament activation depend on thick filament stress but are independent of intracellular calcium concentration in the physiological range. These results establish direct control of myosin motors by thick filament mechano-sensing as a general regulatory mechanism in skeletal muscle that is independent of the canonical calcium signalling pathway. PMID:27796302

Record of massive upwellings from the Pacific large low shear velocity province

NASA Astrophysics Data System (ADS)

Madrigal, Pilar; Gazel, Esteban; Flores, Kennet E.; Bizimis, Michael; Jicha, Brian

2016-11-01

Large igneous provinces, as the surface expression of deep mantle processes, play a key role in the evolution of the planet. Here we analyse the geochemical record and timing of the Pacific Ocean Large Igneous Provinces and preserved accreted terranes to reconstruct the history of pulses of mantle plume upwellings and their relation with a deep-rooted source like the Pacific large low-shear velocity Province during the Mid-Jurassic to Upper Cretaceous. Petrological modelling and geochemical data suggest the need of interaction between these deep-rooted upwellings and mid-ocean ridges in pulses separated by ~10-20 Ma, to generate the massive volumes of melt preserved today as oceanic plateaus. These pulses impacted the marine biota resulting in episodes of anoxia and mass extinctions shortly after their eruption.

Coastal warming and wind-driven upwelling: A global analysis.

PubMed

Varela, Rubén; Lima, Fernando P; Seabra, Rui; Meneghesso, Claudia; Gómez-Gesteira, Moncho

2018-10-15

Long-term sea surface temperature (SST) warming trends are far from being homogeneous, especially when coastal and ocean locations are compared. Using data from NOAA's AVHRR OISST, we have analyzed sea surface temperature trends over the period 1982-2015 at around 3500 worldwide coastal points and their oceanic counterparts with a spatial resolution of 0.25 arc-degrees. Significant warming was observed at most locations although with important differences between oceanic and coastal points. This is especially patent for upwelling regions, where 92% of the coastal locations showed lower warming trends than at neighboring ocean locations. This result strongly suggests that upwelling has the potential to buffer the effects of global warming nearshore, with wide oceanographic, climatic, and biogeographic implications. Copyright © 2018 Elsevier B.V. All rights reserved.

A coupled ice-ocean model of ice breakup and banding in the marginal ice zone

NASA Technical Reports Server (NTRS)

Smedstad, O. M.; Roed, L. P.

1985-01-01

A coupled ice-ocean numerical model for the marginal ice zone is considered. The model consists of a nonlinear sea ice model and a two-layer (reduced gravity) ocean model. The dependence of the upwelling response on wind stress direction is discussed. The results confirm earlier analytical work. It is shown that there exist directions for which there is no upwelling, while other directions give maximum upwelling in terms of the volume of uplifted water. The ice and ocean is coupled directly through the stress at the ice-ocean interface. An interesting consequence of the coupling is found in cases when the ice edge is almost stationary. In these cases the ice tends to break up a few tenths of kilometers inside of the ice edge.

Analysis of coastal upwelling and the production of a biomass

NASA Technical Reports Server (NTRS)

Howe, J. T.

1979-01-01

The coastal upwelling index derived from weather data is input to a set of coupled differential equations that describe the production of a biomass. The curl of the wind stress vector is discussed in the context of the physical extent of the upwelling structure. An analogy between temperature and biomass concentration in the upwelled coastal water is derived and the relationship is quantified. The use of remote satellite or airborne sensing to obtain biomass rate production coefficients is considered.

Contradictory Evidence on Wave Forcing of Tropical Upwelling in the Brewer-Dobson Circulation - A Suggested Resolution

NASA Technical Reports Server (NTRS)

Zhou, Tiehan; Geller, Marvin A.; Lin, Wuyin

2011-01-01

ERA-40 data are analyzed to demonstrate that wave forcing at lower latitudes plays a crucial role in driving the tropical upwelling portion of the Brewer-Dobson circulation. It is shown that subtropical wave forcing is correlated with tropical upwelling on both intraseasonal and interannual time scales when transient waves are taken into account, and that tropical wave forcing exerts its influence on tropical upwelling via its body force on the zonal mean flow.

Electrical image of passive mantle upwelling beneath the northern East Pacific Rise.

PubMed

Key, Kerry; Constable, Steven; Liu, Lijun; Pommier, Anne

2013-03-28

Melt generated by mantle upwelling is fundamental to the production of new oceanic crust at mid-ocean ridges, yet the forces controlling this process are debated. Passive-flow models predict symmetric upwelling due to viscous drag from the diverging tectonic plates, but have been challenged by geophysical observations of asymmetric upwelling that suggest anomalous mantle pressure and temperature gradients, and by observations of concentrated upwelling centres consistent with active models where buoyancy forces give rise to focused convective flow. Here we use sea-floor magnetotelluric soundings at the fast-spreading northern East Pacific Rise to image mantle electrical structure to a depth of about 160 kilometres. Our data reveal a symmetric, high-conductivity region at depths of 20-90 kilometres that is consistent with partial melting of passively upwelling mantle. The triangular region of conductive partial melt matches passive-flow predictions, suggesting that melt focusing to the ridge occurs in the porous melting region rather than along the shallower base of the thermal lithosphere. A deeper conductor observed east of the ridge at a depth of more than 100 kilometres is explained by asymmetric upwelling due to viscous coupling across two nearby transform faults. Significant electrical anisotropy occurs only in the shallowest mantle east of the ridge axis, where high vertical conductivity at depths of 10-20 kilometres indicates localized porous conduits. This suggests that a coincident seismic-velocity anomaly is evidence of shallow magma transport channels rather than deeper off-axis upwelling. We interpret the mantle electrical structure as evidence that plate-driven passive upwelling dominates this ridge segment, with dynamic forces being negligible.

Phytoplankton community and environmental correlates in a coastal upwelling zone along western Taiwan Strait

NASA Astrophysics Data System (ADS)

Wang, Yu; Kang, Jian-hua; Ye, You-yin; Lin, Geng-ming; Yang, Qing-liang; Lin, Mao

2016-02-01

Upwelling system in western Taiwan Strait is important for facilitating the fishery production. This study investigated hydro-chemical properties, phytoplankton biomass, phytoplankton species composition, three-dimensional (horizontal, vertical and transect) distribution of phytoplankton abundance, as well as phytoplankton annual variation and the correlation of phytoplankton community with the upwelling of underlying current and nutrients according to samples of Fujian-Guangdong coastal upwelling zone in western Taiwan Strait from August 27 to September 8, 2009. The results manifest that the nutrient-rich cold and high salinity current on the continental shelf of South China Sea upwells to the Fujian-Guangdong coastal waters through Taiwan Bank and the surging strength to surface is weak while strong at 30-m layer. The thermohaline center of coastal upwelling shifts to the east of Dongshan Island and expanded to offshore waters in comparison with previous records. A total of 137 phytoplankton species belonging to 59 genera in 4 phyla are identified excluding the unidentified species. Diatom is the first major group and followed by dinoflagellate. Cyanobacteria mainly composed by three Trichodesmium species account for a certain proportions, while Chrysophyta are only found in offshore waters. The dominant species include Thalassionema nitzschioides, Pseudo-nitzschia pungens, Thalassionema frauenfeldii, Pseudo-nitzschia delicatissima, Rhizosolenia styliformis, Chaetoceros curvisetus, Diplopsalis lenticula and Trichodesmium thiebautii. Phytoplankton community mainly consists of eurythermal and eurytopic species, followed by warm-water species, tropic high-salinity species and oceanic eurythermic species in order. Phytoplankton abundance ranges from 1.00 × 102 ind./L ~ 437.22 × 102 ind./L with an average of 47.36 × 102 ind./L. For vertical distribution, maximum abundance is found at 30 m-depth and the surface comes second. Besides, the abundance below 30 m decreases with increasing water depth. The horizontal and transect distribution of phytoplankton abundance are both displayed in patchy size, and the peak area is the offshore waters from the east of Dongshan Island to the south of Zhangpu which is basically coincident with the thermohaline center of the upwelling, but the distribution range of phytoplankton high abundance is expanded out of the upwelling center. Phytoplankton abundances on 3 transects in offshore waters from the east of Dongshan Island to the south of Zhangpu are higher than that of nearshore waters and the other 5 transects. Moreover, the underlying current is accompanied by shade flora so as to offer a certain evidence for the presence of upwelling. Phytoplankton abundance at 30 m-depth and bottom both present low significant positive correlation with phosphate, while there are not significant correlations between the content of inorganic nitrogen and phytoplankton abundance in all water layers. The intensity and range of Fujian-guangdong coastal upwelling has a regulating effect on the species succession, abundance distribution and the location of phytoplankton peak area.

Initial observation of upwelling along east coast of Peninsular Malaysia musica gratis

NASA Astrophysics Data System (ADS)

Akhir, M.; Tanggang, F.

2013-12-01

There is no published evidence of upwelling in coastal area along the east coast of Peninsular Malaysia. However numbers of recent cruise data collected during the southwest monsoon found features of thermocline lifting and isolated cooler temperature water along the coast, These sign was observed along the 104°E from numbers of parallel transects. To confirm the presence of upwelling, satellite remote sensing data was used, and numerical model experiments were conducted. Cooler sea-surface temperature along the coast was observed from both in-situ and satellite data, while upward movement in the vertical profiles agreed with the location of upwelling from both in-situ and satellite data. Moreover, these data also show that the upwelled water band along the 104°E longitude stretch approximately 650 km long. Initially, southwesterly wind during this season is believed to be the important mechanism that contributed to this wind-induced Ekman upwelling. musica gratis

Poleward displacement of coastal upwelling-favorable winds through the 21st century

NASA Astrophysics Data System (ADS)

Rykaczewski, R. R.; Dunne, J. P.; Sydeman, W. J.; Garcia-Reyes, M.; Black, B.; Bograd, S. J.

2016-02-01

Coastal upwelling is a critical factor influencing the biological production, acidification, and deoxygenation of the ocean's major eastern boundary current ecosystems. A leading conceptual hypothesis projects that the winds that induce coastal upwelling will intensify in response to increased land-sea temperature differences associated with anthropogenic global warming. We examine this hypothesis using an ensemble of coupled, ocean-atmosphere models and find limited evidence for intensification of upwelling-favorable winds or atmospheric pressure gradients in response to increasing land-sea temperature differences. However, our analyses reveal consistent latitudinal and seasonal dependencies of projected changes in wind intensity associated with poleward migration of major atmospheric high-pressure cells. Summertime winds near poleward boundaries of climatological upwelling zones are projected to intensify, while winds near equatorward boundaries are projected to weaken. Developing a better understanding of future changes in upwelling winds is essential to identifying portions of the oceans susceptible to increased hypoxia, ocean acidification, and eutrophication under climate change.

Contribution of actin filaments to the global compressive properties of fibroblasts.

PubMed

Ujihara, Yoshihiro; Nakamura, Masanori; Miyazaki, Hiroshi; Wada, Shigeo

2012-10-01

Actin filaments are often regarded as tension-bearing components. Here, we examined the effects of actin filaments on global compressive properties of cells experimentally and numerically. Fibroblasts were harvested from the patellar tendon of a mature Japanese white rabbit and treated with cytochalasin D to depolymerize the actin filaments. Intact cells and cells with disrupted actin filaments were subjected to the compressive tests. Each floating cell was held between the cantilever and compressive plates and compressed by moving the compressive plate with a linear actuator to obtain a load-deformation curve under quasi-static conditions. The experimental results demonstrated that the initial stiffness of a cell with disrupted actin filaments decreased by 51%. After the experiments, we simulated the compressive test of cells with/without bundles of actin filaments. A bundle of actin filaments was modeled as a tension-bearing component that generates a force based on Hooke's law only when it was elongated. By contrast, if it was shortened, it was assumed to exert no force. The computational results revealed that the alignment of bundles of actin filaments significantly affected the cell stiffness. In addition, the passive reorientation of bundles of actin filaments perpendicular to the compression induced an increase in the resistance to the vertical elongation of a cell and thereby increased the cell stiffness. These results clearly indicated that bundles of actin filaments contribute to the compressive properties of a cell, even if they are tension-bearing components. Copyright © 2012 Elsevier Ltd. All rights reserved.

On the presence of coastal upwelling along the northeastern Tyrrhenian coast

NASA Astrophysics Data System (ADS)

Martellucci, Riccardo; Melchiorri, Cristiano; Costanzo, Lorenzo; Marcelli, Marco

2017-04-01

The Mediterranean region shows a high climate variability due to the interactions between mid-latitude and tropical processes. This variability makes the Mediterranean a potentially vulnerable region to climatic changes. The present research aims to investigate the hydrographical response to Northerly wind in the northeastern Tyrrhenian coast, to identify the relations between upwelling events and teleconnection patterns. In the Tyrrhenian basin northerly winds flow between North-East and North-West and could be considered upwelling favorable winds. This atmospheric circulation can causes a divergent flow near the coast that generates a subsurface water flows inshore toward the coast up to the surface layer that is upwelling. This phenomenon strongly influence the marine ecosystems, contributing to the supply of nutrients and affecting the primary producers. In this context multi-platform observing system is an important tool to follow the evolution of these phenomena. Sea temperature and wind field acquired by the C-CEMS Observing system were used to identify upwelling phenomena between 2012 and 2016, in the coastal area of Civitavecchia, Northern Tyrrhenian sea, Italy. Moreover a thirty years' wind-driven upwelling conditions have been studied in the area. ERA-Interim (ECMWF) wind data for the period 1982-2012 have been used to compute the distribution of upwelling favorable wind events. These have been compared to "Copernicus Marine Environment Monitoring Service" Sea Surface Temperature (SST) to compute upwelling events. Upwelling favorable wind has been defined in the sector between Northwest and Northeast (Wd >330°N & Wd < 30°N). Wind speed has been divided into three classes: between 4 m/s and 6 m/s, between 6 m/s and 8 m/s and greater than 8 m/s. Sea Surface Temperature have been analyzed to define SST field for wind-driven coastal upwelling assessment. SST minima along the coast was used to identify upwelling from satellite imagery. The two datasets were compared and only the days that presented those characteristics were chosen. ERA-Interim (ECMWF) sea level pressure data over the Europe for the period 1982 -2012 have been used to compute the most relevant teleconnection patterns through Empirical Orthogonal Function's analysis. An increase of upwelling events in the Tyrrhenian coast is observed in the last thirty years; the occurrence of upwelling events has a seasonal oscillation, with a maximum frequency during winter and spring seasons. In the last decade an increase of these events in winter and a decrease in spring is observed; also a recurrence of these events in summer season has been identified, without the specific contribution of one of atmospheric regimes. Data analyzed shows a decrement in Atlantic Ridge (AR) regime and an increment in West Blocking (WBL) regime, especially for the event characterized by wind speeds greater than 8m/s.

Sedimentary silicon isotope indicates the Kuroshio subsurface upwelling in the East China Sea

NASA Astrophysics Data System (ADS)

Zhao, Y.; Yang, S.; Su, N.

2017-12-01

The Kuroshio as the western boundary current of the North Pacific subtropical circulation, originates from east of the Philippine Islands, and flows northeastward along the eastern coast of Taiwan. It's subsurface water intrudes the East China Sea (ECS) and forms a typical upwelling on the inner shelf, which may play an important role in the material and heat transport, biogeochemical process and marine ecosystem of the ECS.To date, most previous studies on the Kuroshio subsurface upwelling focuse on the seasonal and interannual variations, and few researches touch on the upwelling evolution in the geologic past. In this study, eight short sediment cores were taken along the ECS inner shelf (upwelling area), which allow us to reconstruct the upwelling history over the last several hundred years. Although conventional indexes of oceanographic changes, such as salinity, temperature and hydrogen and oxygen isotope, provide valuable constraints on the modern oceanic circulation and water mass movements, how to reconstruct them from geologic records is always a challenging work. In this contribution, we present the data of stable silicon isotope, biogenic opal, diatom assemblages, element geochemistry and stable carbon and nitrogen isotopes of these core sediments, and aim to decipher the Kuroshio subsurface upwelling history on the ECS shelf. We will also illustrate the difference in δ30Si signals between small (<30 um) and large (>150 um) diatom fractions, and test whether it is an effective indicator for paleo-upwelling intensity.

Upwelling characteristics in the Gulf of Finland (Baltic Sea) as revealed by Ferrybox measurements in 2007-2013

NASA Astrophysics Data System (ADS)

Kikas, Villu; Lips, Urmas

2016-07-01

Ferrybox measurements have been carried out between Tallinn and Helsinki in the Gulf of Finland (Baltic Sea) on a regular basis since 1997. The system measures autonomously water temperature, salinity, chlorophyll a fluorescence and turbidity and takes water samples for further analyses at a predefined time interval. We aimed to show how the Ferrybox technology could be used to study the coastal upwelling events in the Gulf of Finland. Based on the introduced upwelling index and related criteria, 33 coastal upwelling events were identified in May-September 2007-2013. The number of events, as well as the frequency of their occurrence and intensity expressed as a sum of daily average temperature deviations in the 20 km wide coastal area, were almost equal near the northern and southern coasts. Nevertheless, the wind impulse, which was needed to generate upwelling events of similar intensity, differed between the northern and southern coastal areas. It is suggested that the general thermohaline structure adapted to the prevailing forcing and the estuarine character of the basin weaken the upwelling created by the westerly to southwesterly (up-estuary) winds and strengthen the upwelling created by the easterly to northeasterly (down-estuary) winds. Two types of upwelling events were identified - one characterized by a strong temperature front and the other revealing gradual decrease in temperature from the open sea to the coastal area, with maximum temperature deviation close to the shore.

A model study of the response of hypoxia to upwelling-favorable wind on the northern Gulf of Mexico shelf

NASA Astrophysics Data System (ADS)

Feng, Yang; Fennel, Katja; Jackson, George A.; DiMarco, Steven F.; Hetland, Robert D.

2014-03-01

The hypoxic region in the northern Gulf of Mexico, one of the largest man-made hypoxic zones in the world, has received extensive scientific study and management interest. A previous statistical study has concluded that in addition to anthropogenic nitrogen loading, the observed hypoxic extent is correlated to the duration of upwelling favorable (westerly) wind without elucidating the underlying mechanism. In this study, we use a three-dimensional, coupled hydrological-biogeochemical model to mechanistically examine how variations of the hypoxic area are related to the duration of upwelling-favorable wind. We performed scenario experiments with different durations of upwelling-favorable wind using realistic winds from summer 2002 (when upwelling-favorable winds were present only for about 1 month) and summer 2009 (when upwelling-favorable conditions started early and persisted for about 2 months). While the maximum simulated hypoxic area is approximately 15,000 km2 in both cases, the evolutions of the hypoxic area and the dates when its maximum extent are reached are different. With an early start of persistently upwelling-favorable wind in 2009, the hypoxic area reached its maximum in early summer and decreased afterwards. By contrast, the hypoxic area was small in early summer of 2002 and peaked during the short period of upwelling-favorable wind in late summer. The model revealed that the wind influences the evolution of the hypoxic area by changing the vertical and horizontal distributions of the low salinity, high chlorophyll water on the shelf.

Diagnosis of femtosecond plasma filament by channeling microwaves along the filament

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alshershby, Mostafa; Ren, Yu; Qin, Jiang

2013-05-20

We introduce a simple, fast, and non-intrusive experimental method to obtain the basic parameters of femtosecond laser-generated plasma filament. The method is based on the channeling of microwaves along both a plasma filament and a well-defined conducting wire. By comparing the detected microwaves that propagate along the plasma filament and a copper wire with known conductivity and spatial dimension, the basic parameters of the plasma filament can be easily obtained. As a result of the possibility of channeling microwave radiation along the plasma filament, we were then able to obtain the plasma density distribution along the filament length.

Spatial evolution of laser filaments in turbulent air

NASA Astrophysics Data System (ADS)

Zeng, Tao; Zhu, Shiping; Zhou, Shengling; He, Yan

2018-04-01

In this study, the spatial evolution properties of laser filament clusters in turbulent air were evaluated using numerical simulations. Various statistical parameters were calculated, such as the percolation probability, filling factor, and average cluster size. The results indicate that turbulence-induced multi-filamentation can be described as a new phase transition universality class. In addition, during this process, the relationship between the average cluster size and filling factor could be fit by a power function. Our results are valuable for applications involving filamentation that can be influenced by the geometrical features of multiple filaments.

Galactic cold cores. VII. Filament formation and evolution: Methods and observational constraints

NASA Astrophysics Data System (ADS)

Rivera-Ingraham, A.; Ristorcelli, I.; Juvela, M.; Montillaud, J.; Men'shchikov, A.; Malinen, J.; Pelkonen, V.-M.; Marston, A.; Martin, P. G.; Pagani, L.; Paladini, R.; Paradis, D.; Ysard, N.; Ward-Thompson, D.; Bernard, J.-P.; Marshall, D. J.; Montier, L.; Tóth, L. V.

2016-06-01

Context. The association of filaments with protostellar objects has made these structures a priority target in star formation studies. However, little is known about the link between filament properties and their local environment. Aims: The datasets from the Herschel Galactic Cold cores key programme allow for a statistical study of filaments with a wide range of intrinsic and environmental characteristics. Characterisation of this sample can therefore be used to identify key physical parameters and quantify the role of the environment in the formation of supercritical filaments. These results are necessary to constrain theoretical models of filament formation and evolution. Methods: Filaments were extracted from fields at distance D< 500 pc with the getfilaments algorithm and characterised according to their column density profiles and intrinsic properties. Each profile was fitted with a beam-convolved Plummer-like function, and the filament structure was quantified based on the relative contributions from the filament "core", represented by a Gaussian, and "wing" component, dominated by the power-law behaviour of the Plummer-like function. These filament parameters were examined for populations associated with different background levels. Results: Filaments increase their core (Mline,core) and wing (Mline,wing) contributions while increasing their total linear mass density (Mline,tot). Both components appear to be linked to the local environment, with filaments in higher backgrounds having systematically more massive Mline,core and Mline,wing. This dependence on the environment supports an accretion-based model of filament evolution in the local neighbourhood (D ≤ 500 pc). Structures located in the highest backgrounds develop the highest central AV, Mline,core, and Mline,wing as Mline,tot increases with time, favoured by the local availability of material and the enhanced gravitational potential. Our results indicate that filaments acquiring a significantly massive central region with Mline,core≳Mcrit/2 may become supercritical and form stars. This translates into a need for filaments to become at least moderately self-gravitating to undergo localised star formation or become star-forming filaments. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.

Variability of temperature and chlorophyll of the Iberian Peninsula near costal ecosystem during an upwelling event for the present climate and a future climate scenario

NASA Astrophysics Data System (ADS)

Lopes, José Fortes; Ferreira, Juan A.; Cardoso, Ana Cristina; Rocha, Alfredo C.

2014-01-01

Understanding the importance and the implication of the climate changes on coastal areas may be one of the major issues for this and next centuries. Climate changes may, indeed, impact the nearshore marine ecosystem, as coastal areas are very sensitive to the strength and the variability of the meteorological forcings. The main purpose of this work is to study temperature and phytoplankton distributions along the Portuguese near coastal zone during upwelling events in the present climate conditions and in a future climate scenario. The SRES-A2 IPCC scenario has been considered. We have used a three-dimensional model for coastal and shelf seas, including the following sub-models: hydrodynamical/physical, biological, sediment and contaminant. The forcings are provided by the interactions at the air-sea, considering the wind intensity and direction with the help of the WRF model (Weather Research and Forecast Model) and the coupled atmosphere-ocean model ECHAM5/MPI-OM. Results show that, for the future climate scenario, there is a reinforcement of the southward wind. The responses of the coastal ecosystem corresponds to the reinforcement of both, the southward (up to 10 cm/s) and the westward (up to 6 cm/s) induced upwelling currents. This, in turn generates an enlargement of the near coast upwelled cold layer, extending up to 60 km, as well as the rise of the warm layer temperature (up to 2.0 °C) and the spreading of the phytoplankton offshore. Significant changes in both the Chl-a vertical and the horizontal distribution patterns have been observed, as the nutrient supply to the upper layers depends on the strength of the upwelling, the bottom topography and orography of the coastal. These results confirm that changes in the strength and eventually the frequency of the upwelling favourable wind impact the phytoplankton distribution, which can have significant effect in the distribution and population of the upper level of the trophic chain of the coastal ecosystem.

Oceanographic, Air-sea Interaction, and Environmental Aspects of Artificial Upwelling Produced by Wave-Inertia Pumps for Potential Hurricane Intensity Mitigation

NASA Astrophysics Data System (ADS)

Soloviev, A.; Dean, C.

2017-12-01

The artificial upwelling system consisting of the wave-inertia pumps driven by surface waves can produce flow of cold deep water to the surface. One of the recently proposed potential applications of the artificial upwelling system is the hurricane intensity mitigation. Even relatively small reduction of intensity may provide significant benefits. The ocean heat content (OHC) is the "fuel" for hurricanes. The OHC can be reduced by mixing of the surface layer with the cold water produced by wave-inertia pumps. Implementation of this system for hurricane mitigation has several oceanographic and air-sea interaction aspects. The cold water brought to the surface from a deeper layer has higher density than the surface water and, therefore, tends to sink back down. The mixing of the cold water produced by artificial upwelling depends on environmental conditions such as stratification, regional ocean circulation, and vertical shear. Another aspect is that as the sea surface temperature drops below the air temperature, the stable stratification develops in the atmospheric boundary layer. The stable atmospheric stratification suppresses sensible and latent heat air-sea fluxes and reduces the net longwave irradiance from the sea surface. As a result, the artificial upwelling may start increasing the OHC (though still reducing the sea surface temperature). In this work, the fate of the cold water in the stratified environment with vertical shear has been studied using computational fluid dynamics (CFD) tools. A 3D large eddy simulation model is initialized with observational temperature, salinity, and current velocity data from a sample location in the Straits of Florida. A periodic boundary condition is set along the direction of the current, which allows us to simulate infinite fetch. The model results indicate that the cold water brought to the sea surface by a wave-inertia pump forms a convective jet. This jet plunges into the upper ocean mixed layer and penetrates the thermocline. On the way down, the jet partially mixes with the surrounding water reducing the temperature of the upper ocean. The OHC thus can either reduce or increase, depending on the wave-inertia pump parameters. Based on the model results, we discuss feasibility of the implementation of the artificial upwelling system for hurricane intensity mitigation.

Observations of the Growth of an Active Region Filament

NASA Astrophysics Data System (ADS)

Yang, Bo

2017-04-01

We present observations of the growth of an active region filament caused by magnetic interactions among the filament and its adjacent superpenumbral filament (SF) and dark thread-like structures (T). Multistep reconnections are identified during the whole growing process. Magnetic flux convergence and cancellation occurring at the positive footpoint region of the filament is the first step reconnection, which resulted in the filament bifurcating into two sets of intertwined threads. One set anchored in situ, while the other set moved toward and interacted with the SF and part of T. This indicates the second step reconnection, which gave rise to the disappearance of the SF and the formation of a long thread-like structure that connects the far ends of the filament and T. The long thread-like structure further interacted with the T and then separated into two parts, representing the third step reconnection. Finally, another similar long thread-like structure, which intertwined with the fixed filament threads, appeared. Hαobservations show that this twisted structure is a longer sinistral filament. Based on the observed photospheric vector magnetograms, we performed a non-linear force-free field extrapolation to reconstruct the magnetic fields above the photosphere and found that the coronal magnetic field lines associated with the filament consists of two twisted flux ropes winding around each other. These results suggest that magnetic interactions among filaments and their adjacent SFs and T could lead to the growth of the filaments, and the filament is probably supported in a flux rope.

Multiple Filamentation of Laser Pulses in a Glass

NASA Astrophysics Data System (ADS)

Apeksimov, D. V.; Bukin, O. A.; Golik, S. S.; Zemlyanov, A. A.; Iglakova, A. N.; Kabanov, A. M.; Kuchinskaya, O. I.; Matvienko, G. G.; Oshlakov, V. K.; Petrov, A. V.; Sokolova, E. B.

2016-03-01

Results are presented of experiments on investigation of the spatial characteristics of multi-filamentation region of giga- and terawatt pulses of a Ti:sapphire laser in a glass. Dependences are obtained of the coordinate of the beginning of filamentation region, number of filaments, their distribution along the laser beam axis, and length of filaments on the pulse power. It is shown that with increasing radiation power, the number of filaments in the multi-filamentation region decreases, whereas the filament diameter has a quasiconstant value for all powers realized in the experiments. It is shown that as a certain power of the laser pulse with Gauss energy density distribution is reached, the filamentation region acquires the shape of a hollow cone with apex directed toward the radiation source.

Oxygen cycling in the northern Benguela Upwelling System: Modelling oxygen sources and sinks

NASA Astrophysics Data System (ADS)

Schmidt, Martin; Eggert, Anja

2016-12-01

This paper elucidates the oxygen dynamics in the northern Benguela Upwelling System by means of process oriented, numerical modelling. Owing to the complex physical-biological interaction in this system, a coupled hydrodynamic-biogeochemical model is required to grasp the various aspects of the oxygen dynamics. We used high-resolution atmospheric fields derived from observations to force our model, available since 1999. The model results represent a 15 years, consistent data set of realistic hydrographic and ecosystem variables, including oxygen distribution patterns. After a concise description of the main aspects of the model, we use the model data to analyse the components contributing to the oxygen dynamics, namely, the ocean circulation, the exchange between ocean and atmosphere as well as the local biogeochemical oxygen cycling in the system. We thoroughly validate the model with available field observations and remote sensing data. The strengths of coastal upwelling, which controls the nutrient supply to the euphotic zone, as well as the poleward undercurrent that carries oxygen and nutrients to the shelf in the northern Benguela Upwelling System are well reproduced in the model. Among the biological oxygen sinks, mineralisation in the sediment, respiration of zooplankton and nitrification in the water column are important. We also found that vertical migration of zooplankton in response to the oxygen conditions provides a regulating feedback, which may prevent a complete deoxygenation of suboxic waters. As long as oxygen or nitrate are available in the bottom waters, the activities of chemolithoautotrophic sulphur bacteria on the sediment surface keep the redoxcline within the sediment and prevent the release of hydrogen sulphide into the water column. By horizontal integration of the simulated ocean-atmosphere oxygen flux, it can be shown that the Kunene upwelling cell between 16 ° S and 18 ° S is a boundary between the equatorial ocean, characterise by weak oxygen release to the atmosphere, and the subtropical Benguela Upwelling System governed by an enhanced and seasonal varying flux. Furthermore, a comparison of oxygen fluxes controlled by physical transport versus biogeochemical processes shows that the physical processes dominate in the northern Benguela Upwelling System.

Dimensional quantization effects in the thermodynamics of conductive filaments

NASA Astrophysics Data System (ADS)

Niraula, D.; Grice, C. R.; Karpov, V. G.

2018-06-01

We consider the physical effects of dimensional quantization in conductive filaments that underlie operations of some modern electronic devices. We show that, as a result of quantization, a sufficiently thin filament acquires a positive charge. Several applications of this finding include the host material polarization, the stability of filament constrictions, the equilibrium filament radius, polarity in device switching, and quantization of conductance.

Dimensional quantization effects in the thermodynamics of conductive filaments.

PubMed

Niraula, D; Grice, C R; Karpov, V G

2018-06-29

We consider the physical effects of dimensional quantization in conductive filaments that underlie operations of some modern electronic devices. We show that, as a result of quantization, a sufficiently thin filament acquires a positive charge. Several applications of this finding include the host material polarization, the stability of filament constrictions, the equilibrium filament radius, polarity in device switching, and quantization of conductance.

Impact of Equatorial Waves on the Variability of Upwelling Process Along West Coast of India

NASA Astrophysics Data System (ADS)

Prakash, K. R.; Nigam, T.; Pant, V.

2017-12-01

Coastal upwelling is a seasonal phenomenon along the south eastern Arabian Sea (SEAS) due to favourable wind setup during Indian Summer Monsoon Season (June-September). This upwelling brings subsurface cold and nutrient rich water to the surface layers. The cold water transported northward by the altered along shore current of west coast of India in the post-monsoon season. The different climatological forcing of positive Indian Ocean Dipole (IOD) and normal years were utilised to simulate the upwelling off the west coast of India using a three dimensional Regional Ocean Modelling System (ROMS). Strength of upwelling and the northward transport were found to be weaken for positive IOD simulations as compared to normal years. Analysis suggests that the meridional wind stress weakening resulted into a decrease in strength of West India Coastal Current (WICC) and, therefore, reduced magnitude of offshore Ekman transport. The mixed layer heat budget calculation also supports the findings by showing dominated vertical process in comparison to net heat flux effect. The post-monsoon northward transport of cold water was found to be correlated with the coastally trapped downwelling Kelvin waves. These waves are the only remote forcing from the Bay of Bengal that reaches to the south-eastern Arabian Sea during the months of October-December. The composite of sea surface height anomalies for the positive IOD and normal years shows that the downwelling Kelwin wave was absent during October-December.

Mantle P wave travel time tomography of Eastern and Southern Africa: New images of mantle upwellings

NASA Astrophysics Data System (ADS)

Benoit, M. H.; Li, C.; van der Hilst, R.

2006-12-01

Much of Eastern Africa, including Ethiopia, Kenya, and Tanzania, has undergone extensive tectonism, including rifting, uplift, and volcanism during the Cenozoic. The cause of this tectonism is often attributed to the presence of one or more mantle upwellings, including starting thermal plumes and superplumes. Previous regional seismic studies and global tomographic models show conflicting results regarding the spatial and thermal characteristics of these upwellings. Additionally, there are questions concerning the extent to which the Archean and Proterozoic lithosphere has been altered by possible thermal upwellings in the mantle. To further constrain the mantle structure beneath Southern and Eastern Africa and to investigate the origin of the tectonism in Eastern Africa, we present preliminary results of a large-scale P wave travel time tomographic study of the region. We invert travel time measurements from the EHB database with travel time measurements taken from regional PASSCAL datasets including the Ethiopia Broadband Seismic Experiment (2000-2002); Kenya Broadband Seismic Experiment (2000-2002); Southern Africa Seismic Experiment (1997- 1999); Tanzania Broadband Seismic Experiment (1995-1997), and the Saudi Arabia PASSCAL Experiment (1995-1997). The tomographic inversion uses 3-D sensitivity kernels to combine different datasets and is parameterized with an irregular grid so that high spatial resolution can be obtained in areas of dense data coverage. It uses an adaptive least-squares context using the LSQR method with norm and gradient damping.

Variability and Dynamics of the Yucatan Upwelling: High-Resolution Simulations

NASA Astrophysics Data System (ADS)

Jouanno, J.; Pallàs-Sanz, E.; Sheinbaum, J.

2018-02-01

The Yucatan shelf in the southern Gulf of Mexico is under the influence of an upwelling that uplifts cool and nutrient rich waters over the continental shelf. The analysis of a set of high-resolution (Δx = Δy ≈ 2.8 km) simulations of the Gulf of Mexico shows two dominant modes of variability of the Yucatan upwelling system: (1) a low-frequency mode related to variations in position and intensity of the Loop Current along the shelf, with upwelling intensified when the Loop Current is strong and approaches to the Yucatan shelf break and (2) a high-frequency mode with peak frequency in the 6-10 days band related to wind-forced coastal waves that force vertical velocities along the eastern Yucatan shelf break. To first order, the strength and position of the Loop Current are found to control the intensity of the upwelling, but we show that high-frequency winds also contribute (˜17%) to a net input of cool waters (<22.5°C) on the Yucatan shelf. Finally, although more observational studies are needed to corroborate the topographic character of the Yucatan upwelling system, this study reveals the key role played by a notch along the Yucatan shelf break: a sensitivity simulation without the notch shows a 55% reduction of the upwelling.

Spiraling pathways of global deep waters to the surface of the Southern Ocean.

PubMed

Tamsitt, Veronica; Drake, Henri F; Morrison, Adele K; Talley, Lynne D; Dufour, Carolina O; Gray, Alison R; Griffies, Stephen M; Mazloff, Matthew R; Sarmiento, Jorge L; Wang, Jinbo; Weijer, Wilbert

2017-08-02

Upwelling of global deep waters to the sea surface in the Southern Ocean closes the global overturning circulation and is fundamentally important for oceanic uptake of carbon and heat, nutrient resupply for sustaining oceanic biological production, and the melt rate of ice shelves. However, the exact pathways and role of topography in Southern Ocean upwelling remain largely unknown. Here we show detailed upwelling pathways in three dimensions, using hydrographic observations and particle tracking in high-resolution models. The analysis reveals that the northern-sourced deep waters enter the Antarctic Circumpolar Current via southward flow along the boundaries of the three ocean basins, before spiraling southeastward and upward through the Antarctic Circumpolar Current. Upwelling is greatly enhanced at five major topographic features, associated with vigorous mesoscale eddy activity. Deep water reaches the upper ocean predominantly south of the Antarctic Circumpolar Current, with a spatially nonuniform distribution. The timescale for half of the deep water to upwell from 30° S to the mixed layer is ~60-90 years.Deep waters of the Atlantic, Pacific and Indian Oceans upwell in the Southern Oceanbut the exact pathways are not fully characterized. Here the authors present a three dimensional view showing a spiralling southward path, with enhanced upwelling by eddy-transport at topographic hotspots.

Changes in the partial pressure of carbon dioxide in the Mauritanian-Cap Vert upwelling region between 2005 and 2012

NASA Astrophysics Data System (ADS)

González-Dávila, Melchor; Magdalena Santana Casiano, J.; Machín, Francisco

2017-08-01

Coastal upwellings along the eastern margins of major ocean basins represent regions of large ecological and economic importance due to the high biological productivity. The role of these regions for the global carbon cycle makes them essential in addressing climate change. The physical forcing of upwelling processes that favor production in these areas are already being affected by global warming, which will modify the intensity of upwelling and, consequently, the carbon dioxide cycle. Here, we present monthly high-resolution surface experimental data for temperature and partial pressure of carbon dioxide in one of the four most important upwelling regions of the planet, the Mauritanian-Cap Vert upwelling region, from 2005 to 2012. This data set provides direct evidence of seasonal and interannual changes in the physical and biochemical processes. Specifically, we show an upwelling intensification and an increase of 0.6 Tg yr-1 in CO2 outgassing due to increased wind speed, despite increased primary productivity. This increase in CO2 outgassing together with the observed decrease in sea surface temperature at the location of the Mauritanian Cap Blanc, 21° N, produced a pH rate decrease of -0.003 ± 0.001 yr-1.

Mechanical model for filament buckling and growth by phase ordering.

PubMed

Rey, Alejandro D; Abukhdeir, Nasser M

2008-02-05

A mechanical model of open filament shape and growth driven by phase ordering is formulated. For a given phase-ordering driving force, the model output is the filament shape evolution and the filament end-point kinematics. The linearized model for the slope of the filament is the Cahn-Hilliard model of spinodal decomposition, where the buckling corresponds to concentration fluctuations. Two modes are predicted: (i) sequential growth and buckling and (ii) simultaneous buckling and growth. The relation among the maximum buckling rate, filament tension, and matrix viscosity is given. These results contribute to ongoing work in smectic A filament buckling.

Record of massive upwellings from the Pacific large low shear velocity province

PubMed Central

Madrigal, Pilar; Gazel, Esteban; Flores, Kennet E.; Bizimis, Michael; Jicha, Brian

2016-01-01

Large igneous provinces, as the surface expression of deep mantle processes, play a key role in the evolution of the planet. Here we analyse the geochemical record and timing of the Pacific Ocean Large Igneous Provinces and preserved accreted terranes to reconstruct the history of pulses of mantle plume upwellings and their relation with a deep-rooted source like the Pacific large low-shear velocity Province during the Mid-Jurassic to Upper Cretaceous. Petrological modelling and geochemical data suggest the need of interaction between these deep-rooted upwellings and mid-ocean ridges in pulses separated by ∼10–20 Ma, to generate the massive volumes of melt preserved today as oceanic plateaus. These pulses impacted the marine biota resulting in episodes of anoxia and mass extinctions shortly after their eruption. PMID:27824054

Sub-regional ecosystem variability in the Canary Current upwelling

NASA Astrophysics Data System (ADS)

Arístegui, Javier; Barton, Eric D.; Álvarez-Salgado, Xosé A.; Santos, A. Miguel P.; Figueiras, Francisco G.; Kifani, Souad; Hernández-León, Santiago; Mason, Evan; Machú, Eric; Demarcq, Hervé

2009-12-01

The Canary Current upwelling ecosystem (CanC) constitutes one of the four main eastern boundary upwelling ecosystems (EBUEs) of the world, thus hosting high productivity and fisheries. Recent observations indicate that the CanC region as a whole has been experiencing a progressive warming and a decrease in productivity over the last decades. This overall trend is however not directly reflected in the fisheries of the region. Here we update recent results and previous reviews on the CanC, covering aspects from the physical environment to fish populations and fisheries on a range of time scales. We approach these topics, when possible, through a comparative exploration of the biogeographical characteristics of different sub-regions comprising this ecosystem. This review shows that variability in coastline configuration, shelf width, coastal upwelling, nutrient fertilization, productivity, or retentive vs. dispersive physical mechanisms, among other factors, may help explain sub-regional differences in fish distributions and abundances in the CanC. Nevertheless, the lack of systematic information on the regional variability of physical and biological processes hampers an integrated understanding of the relative contribution of natural vs. human-induced variability in the populations of at least small-pelagic fishes and their associated fisheries.

Mantle Upwellings Below the Ibero-Maghrebian Region with a Common Deep Source from P Travel-time Tomography

NASA Astrophysics Data System (ADS)

Civiero, C.; Custodio, S.; Silveira, G. M.; Rawlinson, N.; Arroucau, P.

2017-12-01

The processes responsible for the geodynamical evolution of the Ibero-Maghrebian domain are still enigmatic. Several geophysical studies have improved our understanding of the region, but no single model has been accepted yet. This study takes advantage of the dense station networks deployed from France in the north to Canary Islands and Morocco in the south to provide a new high-resolution P-wave velocity model of the structure of the upper-mantle and top of the lower mantle. These images show subvertical small-scale upwellings below Atlas Range, Canary Islands and Central Iberia that seem to cross the transition zone. The results, together with geochemical evidence and a comparison with previous global tomographic models, reveal the ponding or flow of deep-plume material beneath the transition zone, which seems to feed upper-mantle "secondary" pulses. In the upper mantle the plumes, in conjunction with the subduction-related upwellings, allow the hot mantle to rise in the surrounding zones. During its rising, the mantle interacts with horizontal SW slab-driven flow which skirts the Alboran slab and connects with the mantle upwelling below Massif Central through the Valencia Trough rift.

Transient response of the Northwestern Iberian upwelling regime.

PubMed

Ferreira Cordeiro, Nuno Gonçalo; Dubert, Jesus; Nolasco, Rita; Desmond Barton, Eric

2018-01-01

The hydrography and dynamics of NW Iberian margin were explored for July 2009, based on a set of in situ and remote sensing observations. Zonal sections of standard CTD casts, towed CTD (SeaSoar), Acoustic Doppler Current Profilers (ADCP) and Lagrangian surveys were made to characterize cycles of upwelling and relaxation in this region. Two periods of northerly winds, bounded by relaxation periods, were responsible for the formation of an upwelling front extending to the shelf edge. An equatorward flow was quickly set up on the shelf responding to the northerly wind pulses. South of Cape Silleiro, the development and subsequent relaxation of an upwelling event was intensively surveyed in the shelf, following a Lagrangian drifter transported by the upwelling jet. This region is part of an upwelling center extending from Cape Silleiro to Porto, where the surface temperature was colder than the neighboring regions, under upwelling favorable winds. As these winds relaxed, persistent poleward flow developed, originating south of the upwelling center and consisting in an inner-shelf tongue of warm waters. During an event of strong southerly wind, the poleward flow was observed to extend to the whole continental shelf. Although the cruise was executed during summertime, the presence of river-plumes was observed over the shelf. The interaction of the plumes with the circulation on the shelf was also described in terms of coastal convergence and offshore advection. The sampling of the offshore and slope regions showed the presence of the Iberian poleward current offshore and a persistent equatorward flow over the upper slope.

Blowout Surge due to Interaction between a Solar Filament and Coronal Loops

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Haidong; Jiang, Yunchun; Yang, Jiayan

2017-06-20

We present an observation of the interaction between a filament and the outer spine-like loops that produces a blowout surge within one footpoint of large-scale coronal loops on 2015 February 6. Based the observation of the AIA 304 and 94 Å, the activated filament is initially embedded below a dome of a fan-spine configuration. Due to the ascending motion, the erupting filament reconnects with the outer spine-like field. We note that the material in the filament blows out along the outer spine-like field to form the surge with a wider spire, and a two-ribbon flare appears at the site ofmore » the filament eruption. In this process, small bright blobs appear at the interaction region and stream up along the outer spine-like field and down along the eastern fan-like field. As a result, a leg of the filament becomes radial and the material in it erupts, while another leg forms the new closed loops. Our results confirm that the successive reconnection occurring between the erupting filament and the coronal loops may lead to a strong thermal/magnetic pressure imbalance, resulting in a blowout surge.« less

Filamentation of ultrashort light pulses in a liquid scattering medium

NASA Astrophysics Data System (ADS)

Jukna, V.; Tamošauskas, G.; Valiulis, G.; Aputis, M.; Puida, M.; Ivanauskas, F.; Dubietis, A.

2009-01-01

We have studied filamentation of 1-ps laser pulses in a scattering medium (aqueous suspension of 2-μm polystyrene microspheres) and compared filamentation dynamics to that in pure water. Our results indicate that light scattering does not alter filamentation dynamics in general, but rather results in farther position of the nonlinear focus, shorter filament length, and the development of speckle structure in the peripheral part of the beam. The experimental observations are qualitatively reproduced by the numerical model which accounts for diffraction, self-focusing, multiphoton absorption, and light scattering introduced through a stochastic diffusion and diffraction term.

OBSERVATIONS OF THE GROWTH OF AN ACTIVE REGION FILAMENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Bo; Jiang, Yunchun; Yang, Jiayan

We present observations of the growth of an active region filament caused by magnetic interactions among the filament and its adjacent superpenumbral filament (SF) and dark thread-like structures (T). Multistep reconnections are identified during the whole growing process. Magnetic flux convergence and cancellation occurring at the positive footpoint region of the filament is the first step reconnection, which resulted in the filament bifurcating into two sets of intertwined threads. One set anchored in situ, while the other set moved toward and interacted with the SF and part of T. This indicates the second step reconnection, which gave rise to themore » disappearance of the SF and the formation of a long thread-like structure that connects the far ends of the filament and T. The long thread-like structure further interacted with the T and then separated into two parts, representing the third step reconnection. Finally, another similar long thread-like structure, which intertwined with the fixed filament threads, appeared. H {sub α} observations show that this twisted structure is a longer sinistral filament. Based on the observed photospheric vector magnetograms, we performed a non-linear force-free field extrapolation to reconstruct the magnetic fields above the photosphere and found that the coronal magnetic field lines associated with the filament consists of two twisted flux ropes winding around each other. These results suggest that magnetic interactions among filaments and their adjacent SFs and T could lead to the growth of the filaments, and the filament is probably supported in a flux rope.« less

Influence of Coastal Upwelling on SST Trends along the South Coast of Java

PubMed Central

Varela, R.; Santos, F.; Gómez-Gesteira, M.; Álvarez, I.; Costoya, X.; Días, J. M.

2016-01-01

The south coast of Java has warmed at a much lower rate than adjacent ocean locations over the last three decades (1982–2015). This behavior can be observed during the upwelling season (July-October) and it is especially patent in August and September when upwelling attains the highest values. Although different warming rates (ocean-coast) had been previously observed in other areas around the world, this behavior was always linked to situations where upwelling increased or remained unchanged. South Java warming is observed at ocean locations and cooling near shore but under a scenario of decreasing upwelling (~30% in some cases). The origin of coastal cooling is due to changes in the vertical structure of the water column. A vein of subsurface water, which has cooled at a rate higher than 0.3°C per decade, is observed to enter from the northwestern part of the study area following the South Java Current. This water only manifests at surface near coast, where it is pumped up by coastal upwelling. PMID:27606676

Surface circulation and upwelling patterns around Sri Lanka

NASA Astrophysics Data System (ADS)

de Vos, A.; Pattiaratchi, C. B.; Wijeratne, E. M. S.

2014-10-01

Sri Lanka occupies a unique location within the equatorial belt in the northern Indian Ocean, with the Arabian Sea on its western side and the Bay of Bengal on its eastern side, and experiences bi-annually reversing monsoon winds. Aggregations of blue whale (Balaenoptera musculus) have been observed along the southern coast of Sri Lanka during the northeast (NE) monsoon, when satellite imagery indicates lower productivity in the surface waters. This study explored elements of the dynamics of the surface circulation and coastal upwelling in the waters around Sri Lanka using satellite imagery and numerical simulations using the Regional Ocean Modelling System (ROMS). The model was run for 3 years to examine the seasonal and shorter-term (~10 days) variability. The results reproduced correctly the reversing current system, between the Equator and Sri Lanka, in response to the changing wind field: the eastward flowing Southwest Monsoon Current (SMC) during the southwest (SW) monsoon transporting 11.5 Sv (mean over 2010-2012) and the westward flowing Northeast Monsoon Current (NMC) transporting 9.6 Sv during the NE monsoon, respectively. A recirculation feature located to the east of Sri Lanka during the SW monsoon, the Sri Lanka Dome, is shown to result from the interaction between the SMC and the island of Sri Lanka. Along the eastern and western coasts, during both monsoon periods, flow is southward converging along the southern coast. During the SW monsoon, the island deflects the eastward flowing SMC southward, whilst along the eastern coast, the southward flow results from the Sri Lanka Dome recirculation. The major upwelling region, during both monsoon periods, is located along the southern coast, resulting from southward flow converging along the southern coast and subsequent divergence associated with the offshore transport of water. Higher surface chlorophyll concentrations were observed during the SW monsoon. The location of the flow convergence and hence the upwelling centre was dependent on the relative strengths of wind-driven flow along the eastern and western coasts: during the SW (NE) monsoon, the flow along the western (eastern) coast was stronger, migrating the upwelling centre to the east (west).

Femtosecond Laser Filamentation for Atmospheric Sensing

PubMed Central

Xu, Huai Liang; Chin, See Leang

2011-01-01

Powerful femtosecond laser pulses propagating in transparent materials result in the formation of self-guided structures called filaments. Such filamentation in air can be controlled to occur at a distance as far as a few kilometers, making it ideally suited for remote sensing of pollutants in the atmosphere. On the one hand, the high intensity inside the filaments can induce the fragmentation of all matters in the path of filaments, resulting in the emission of characteristic fluorescence spectra (fingerprints) from the excited fragments, which can be used for the identification of various substances including chemical and biological species. On the other hand, along with the femtosecond laser filamentation, white-light supercontinuum emission in the infrared to UV range is generated, which can be used as an ideal light source for absorption Lidar. In this paper, we present an overview of recent progress concerning remote sensing of the atmosphere using femtosecond laser filamentation. PMID:22346566

Detecting effects of filaments on galaxy properties in the Sloan Digital Sky Survey III

NASA Astrophysics Data System (ADS)

Chen, Yen-Chi; Ho, Shirley; Mandelbaum, Rachel; Bahcall, Neta A.; Brownstein, Joel R.; Freeman, Peter E.; Genovese, Christopher R.; Schneider, Donald P.; Wasserman, Larry

2017-04-01

We study the effects of filaments on galaxy properties in the Sloan Digital Sky Survey (SDSS) Data Release 12 using filaments from the 'Cosmic Web Reconstruction' catalogue, a publicly available filament catalogue for SDSS. Since filaments are tracers of medium- to high-density regions, we expect that galaxy properties associated with the environment are dependent on the distance to the nearest filament. Our analysis demonstrates that a red galaxy or a high-mass galaxy tends to reside closer to filaments than a blue or low-mass galaxy. After adjusting the effect from stellar mass, on average, early-forming galaxies or large galaxies have a shorter distance to filaments than late-forming galaxies or small galaxies. For the main galaxy sample, all signals are very significant (>6σ). For the LOWZ and CMASS sample, the stellar mass and size are significant (>2σ). The filament effects we observe persist until z = 0.7 (the edge of the CMASS sample). Comparing our results to those using the galaxy distances from redMaPPer galaxy clusters as a reference, we find a similar result between filaments and clusters. Moreover, we find that the effect of clusters on the stellar mass of nearby galaxies depends on the galaxy's filamentary environment. Our findings illustrate the strong correlation of galaxy properties with proximity to density ridges, strongly supporting the claim that density ridges are good tracers of filaments.

Microbial Functioning and Community Structure Variability in the Mesopelagic and Epipelagic Waters of the Subtropical Northeast Atlantic Ocean

PubMed Central

Arístegui, Javier; Gasol, Josep M.; Herndl, Gerhard J.

2012-01-01

We analyzed the regional distribution of bulk heterotrophic prokaryotic activity (leucine incorporation) and selected single-cell parameters (cell viability and nucleic acid content) as parameters for microbial functioning, as well as bacterial and archaeal community structure in the epipelagic (0 to 200 m) and mesopelagic (200 to 1,000 m) subtropical Northeast Atlantic Ocean. We selectively sampled three contrasting regions covering a wide range of surface productivity and oceanographic properties within the same basin: (i) the eddy field south of the Canary Islands, (ii) the open-ocean NE Atlantic Subtropical Gyre, and (iii) the upwelling filament off Cape Blanc. In the epipelagic waters, a high regional variation in hydrographic parameters and bacterial community structure was detected, accompanied, however, by a low variability in microbial functioning. In contrast, mesopelagic microbial functioning was highly variable between the studied regions despite the homogeneous abiotic conditions found therein. More microbial functioning parameters indicated differences among the three regions within the mesopelagic (i.e., viability of cells, nucleic acid content, cell-specific heterotrophic activity, nanoflagellate abundance, prokaryote-to-nanoflagellate abundance ratio) than within the epipelagic (i.e., bulk activity, nucleic acid content, and nanoflagellate abundance) waters. Our results show that the mesopelagic realm in the Northeast Atlantic is, in terms of microbial activity, more heterogeneous than its epipelagic counterpart, probably linked to mesoscale hydrographical variations. PMID:22344670

[Energy saving achieved by limited filamentous bulking under low dissolved oxygen: derivation, originality and theoretical basis].

PubMed

Peng, Yong-zhen; Guo, Jian-hua; Wang, Shu-ying; Chen, Ying

2008-12-01

How to prevent and control filamentous bulking sludge has being a research focus and attracted much attention. To date despite the extensive research that has been done on bulking sludge, filamentous bulking still occurs world-wide and a comprehensive solution does not seem to be available. Particularly, there are few studies about making use of the characteristics of filamentous bacteria and achieving energy saving by filamentous bulking. Limited filamentous bulking, a novel method for energy saving while equal or better treatment performance by allowing slight and controlled filamentous bulking sludge at low dissolved oxygen (DO), was proposed based on full-scale field observations. The practical operation showed that limited filamentous bulking resulted from a decline in DO concentration. COD, SS and TP removal could be enhanced and energy saving could be achieved by limited filamentous bulking at low DO. The derivation of limited filamentous bulking is introduced firstly, and then the theoretical fundamentals of the technique of limited filamentous bulking are presented and analyzed, including the occurrence of limited filamentous bulking caused by low DO, the enhanced effect of filamentous bacteria on pollutants removal and the energy saving mechanism by using limited filamentous bulking. Besides, the paper provides some new perspectives about the application and research direction of limited filamentous bulking in future.

The importance of subfragment 2 and C-terminus of myosin heavy chain for thick filament assembly in skeletal muscle cells.

PubMed

Ojima, Koichi; Oe, Mika; Nakajima, Ikuyo; Shibata, Masahiro; Muroya, Susumu; Chikuni, Koichi; Hattori, Akihito; Nishimura, Takanori

2015-04-01

In skeletal muscle cells, myofibrillar proteins are highly organized into sarcomeres in which thick filaments interdigitate with thin filaments to generate contractile force. The size of thick filaments, which consist mainly of myosin molecules, is strictly controlled. However, little is known about the mechanisms by which myosin molecules assemble into thick filaments. Here, we assessed the ability of each domain of myosin heavy chain (Myh) to form thick filaments. We showed that exogenously expressed subfragment 2 (S2) + light meromyosin (LMM) of Myh was efficiently incorporated into thick filaments in muscle cells, although neither solely expressed S2 nor LMM targeted to thick filaments properly. In nonmuscle COS7 cells, S2+LMM formed more enlarged filaments/speckles than LMM. These results suggest that Myh filament formation is induced by S2 accompanying LMM. We further examined the effects of Myh C-terminus on thick filament assembly. C-terminal deletion mutants were incorporated not into entire thick filaments but rather into restricted regions of thick filaments. Our findings suggest that the elongation of myosin filaments to form thick filaments is regulated by S2 as well as C-terminus of LMM. © 2014 Japanese Society of Animal Science.

Measuring Filament Orientation: A New Quantitative, Local Approach

NASA Astrophysics Data System (ADS)

Green, C.-E.; Dawson, J. R.; Cunningham, M. R.; Jones, P. A.; Novak, G.; Fissel, L. M.

2017-09-01

The relative orientation between filamentary structures in molecular clouds and the ambient magnetic field provides insight into filament formation and stability. To calculate the relative orientation, a measurement of filament orientation is first required. We propose a new method to calculate the orientation of the one-pixel-wide filament skeleton that is output by filament identification algorithms such as filfinder. We derive the local filament orientation from the direction of the intensity gradient in the skeleton image using the Sobel filter and a few simple post-processing steps. We call this the “Sobel-gradient method.” The resulting filament orientation map can be compared quantitatively on a local scale with the magnetic field orientation map to then find the relative orientation of the filament with respect to the magnetic field at each point along the filament. It can also be used for constructing radial profiles for filament width fitting. The proposed method facilitates automation in analyses of filament skeletons, which is imperative in this era of “big data.”

A general explanation on the correlation of dark matter halo spin with the large-scale environment

NASA Astrophysics Data System (ADS)

Wang, Peng; Kang, Xi

2017-06-01

Both simulations and observations have found that the spin of halo/galaxy is correlated with the large-scale environment, and particularly the spin of halo flips in filament. A consistent picture of halo spin evolution in different environments is still lacked. Using N-body simulation, we find that halo spin with its environment evolves continuously from sheet to cluster, and the flip of halo spin happens both in filament and nodes. The flip in filament can be explained by halo formation time and migrating time when its environment changes from sheet to filament. For low-mass haloes, they form first in sheets and migrate into filaments later, so their mass and spin growth inside filament are lower, and the original spin is still parallel to filament. For high-mass haloes, they migrate into filaments first, and most of their mass and spin growth are obtained in filaments, so the resulted spin is perpendicular to filament. Our results well explain the overall evolution of cosmic web in the cold dark matter model and can be tested using high-redshift data. The scenario can also be tested against alternative models of dark matter, such as warm/hot dark matter, where the structure formation will proceed in a different way.

Penetration of Magnetosheath Plasma into Dayside Magnetosphere: 1. Density, Velocity, and Rotation

NASA Technical Reports Server (NTRS)

Lyatsky, Wladislaw; Pollock, Craig; Goldstein, Melvyn L.; Lyatsky, Sonya; Avanov, Levon Albert

2016-01-01

In this study, we examine a large number of plasma structures (filaments), observed with the Cluster spacecraft during 2 years (2007-2008) in the dayside magnetosphere but consisting of magnetosheath plasma. To reduce the effects observed in the cusp regions and on magnetosphere flanks, we consider these events predominantly inside the narrow cone less than 30 about the subsolar point. Two important features of these filaments are (i) their stable antisunward (earthward) motion inside the magnetosphere, whereas the ambient magnetospheric plasma moves usually in the opposite direction (sunward), and (ii) between these filaments and the magnetopause, there is a region of magnetospheric plasma, which separates these filaments from the magnetosheath. The stable earthward motion of these magnetopause show the possible disconnection of these filaments from the magnetosheath, as suggested earlier by many researchers. The results also show that these events cannot be a result of back-and-forth motions of magnetopause position or surface waves propagating on the magnetopause. Another important feature of these filaments is their rotation about the filament axis, which might be a result of their passage through the velocity shear on magnetopause boundary. After crossing the velocity shear, the filaments get a rotational velocity, which has opposite directions in the noon-dusk and noon-dawn sectors. This rotation velocity may be an important factor, supporting the stability of these filaments and providing their motion into the magnetosphere.

A penny shaped crack in a filament-reinforced matrix. 2: The crack problem

NASA Technical Reports Server (NTRS)

Pacella, A. H.; Erdogan, F.

1973-01-01

The elastostatic interaction problem between a penny-shaped crack and a slender inclusion or filament in an elastic matrix was formulated. For a single filament as well as multiple identical filaments located symmetrically around the crack the problem is shown to reduce to a singular integral equation. The solution of the problem is obtained for various geometries and filament-to-matrix stiffness ratios, and the results relating to the angular variation of the stress intensity factor and the maximum filament stress are presented.

Pathways of upwelling deep waters to the surface of the Southern Ocean

NASA Astrophysics Data System (ADS)

Tamsitt, Veronica; Drake, Henri; Morrison, Adele; Talley, Lynne; Dufour, Carolina; Gray, Alison; Griffies, Stephen; Mazloff, Matthew; Sarmiento, Jorge; Wang, Jinbo; Weijer, Wilbert

2017-04-01

Upwelling of Atlantic, Indian and Pacific deep waters to the sea surface in the Southern Ocean closes the global overturning circulation and is fundamentally important for oceanic uptake of anthropogenic carbon and heat, nutrient resupply for sustaining oceanic biological production, and the melt rate of ice shelves. Here we go beyond the two-dimensional view of Southern Ocean upwelling, to show detailed Southern Ocean upwelling pathways in three dimensions, using hydrographic observations and particle tracking in high-resolution ocean and climate models. The northern deep waters enter the Antarctic Circumpolar Current (ACC) via narrow southward currents along the boundaries of the three ocean basins, before spiraling southeastward and upward through the ACC. Upwelling is greatly enhanced at five major topographic features, associated with vigorous mesoscale eddy activity. Deep water reaches the upper ocean predominantly south of the southern ACC boundary, with a spatially nonuniform distribution, regionalizing warm water supply to Antarctic ice shelves and the delivery of nutrient and carbon-rich water to the sea surface. The timescale for half of the deep water to upwell from 30°S to the mixed layer is on the order of 60-90 years, which has important implications for the timescale for signals to propagate through the deep ocean. In addition, we quantify the diabatic transformation along particle trajectories, to identify where diabatic processes are important along the upwelling pathways.

Linking the Modern and Recent Record of Cabo Frio Upwelling with Local Climate and Biogeochemical Processes in Hypersaline Coastal Lagoons, Região dos Lagos, Rio de Janeiro, Brazil

NASA Astrophysics Data System (ADS)

McKenzie, J. A.; Nascimento, G. S.; Albuquerque, A. L.; Belem, A. L.; Carreira, R.; Eglinton, T. I.; Vasconcelos, C.

2015-12-01

A unique marine and lagoonal system along the coast east of Rio de Janeiro is being investigated to understand the impact of climatic variability on the South Atlantic carbon cycle and biomineralisation processes involved in carbonate precipitation in the hypersaline coastal lagoons. The region is dominated by a semi-arid microclimate attributed to the local coastal upwelling phenomenon near Cabo Frio. The intensity of the upwelling affects the hydrology of the annual water and biogeochemical cycles in the lagoons, as well as biogeochemical signals of environmental change recorded in both onshore and offshore sediments. Preliminary results of δ18O and δD values of water samples collected monthly in Lagoa Vermelha and Brejo do Espinho from 2011 to 2014 show lower values for waters corresponding to the wet season, reflecting increased input of meteoric water. The higher values for waters collected during the dry season reflect the greater amount of evaporation with increased seasonal aridity. Radiocarbon dating of Holocene marine and lagoonal cores indicates that Mg-carbonate precipitation in the lagoons is associated with high evaporation. Modern field observations for the last 3 years suggest that the amount of carbonate precipitation is correlated with evaporitic conditions associated with the upwelling phenomenon. A calibration study of hydrogen isotopic fractionation in the modern lagoons is underway to define a relationship between δDlipid of suspended particles and δDwater of associated water. This isotopic relationship will be applied to material obtained in cores from the lagoons. Offshore cores will be studied using well-tested paleotemperature proxies to evaluate the intensity of the upwelling during the Holocene. In summary, linking the coastal upwelling with the lagoonal hydrology has the potential to furnish important insights about the relationship between the local climate and paleoceanographic circulation associated with the regional carbon cycle.

Wind-induced upwelling in the Kerguelen Plateau region

NASA Astrophysics Data System (ADS)

Gille, S. T.; Carranza, M. M.; Cambra, R.

2014-11-01

In contrast to most of the Southern Ocean, the Kerguelen Plateau supports an unusually strong spring chlorophyll (Chl a) bloom, likely because the euphotic zone in the region is supplied with higher iron concentrations. This study uses satellite wind, sea surface temperature (SST), and ocean color data to explore the impact of wind-driven processes on upwelling of cold (presumably iron-rich) water to the euphotic zone. Results show that, in the Kerguelen region, cold SSTs correlate with high wind speeds, implying that wind-mixing leads to enhanced vertical mixing. Cold SSTs also correlate with negative wind-stress curl, implying that Ekman pumping can further enhance upwelling. In the moderate to high eddy kinetic energy (EKE) regions surrounding Kerguelen, we find evidence of coupling between winds and SST gradients associated with mesoscale eddies, which can locally modulate the wind-stress curl. This coupling introduces persistent wind-stress curl patterns and Ekman pumping around these long-lived eddies, which may modulate the evolution of Chl a in the downstream plume far offshore. Close to the plateau, this eddy coupling breaks down. Kerguelen has a significant wind shadow on its downwind side, which changes position depending on the prevailing wind and which generates a wind-stress curl dipole that shifts location depending on wind direction. This leads to locally enhanced Ekman pumping for a few hundred kilometers downstream from the Kerguelen Plateau; Chl a values tend to be more elevated in places where wind-stress curl induces Ekman upwelling than in locations of downwelling, although the estimated upwelling rates are too small for this relationship to derive from direct effects on upward iron supply, and thus other processes, which remain to be determined, must also be involved in the establishment of these correlations. During the October and November (2011) KErguelen Ocean and Plateau compared Study (KEOPS-2) field program, wind conditions were fairly typical for the region, with enhanced Ekman upwelling expected to the north of the Kerguelen Islands.

The Gulf of Cádiz pelagic ecosystem: A review

NASA Astrophysics Data System (ADS)

García Lafuente, Jesús; Ruiz, Javier

2007-08-01

The Gulf of Cádiz, strategically situated between the North Atlantic Ocean and the Mediterranean Sea, has been the focus of attention of a few oceanographic studies dealing with the deep circulation in order to understand the dynamics of the dense plume of Mediterranean water. Much less attention has been paid to the surface pelagic layer which holds important living resources of commercial and ecological interest. This overview summarizes the recent advances that have been made concerning the regional oceanography of the northern half of this important basin from an interdisciplinary point of view. Probably the most relevant oceanographic feature of the basin is its strong seasonality, which is linked to the meteorologically-induced seasonality of the eastern boundary current system of the North Atlantic. The prominent cape Santa Maria divides the continental shelf off the southern Iberian Peninsula in two shelves of different shape that hold different oceanographic processes, which in turn determine the characteristics of the pelagic ecosystem. Mass and energy inputs from land as well as tidally-driven processes makes the wider eastern shelf be more productive while the narrower western shelf, cut by a sharp submarine canyon, is under the influence of the almost-permanent upwelling spot off cape San Vicente. Under easterlies, the west-going, warm coastal countercurrent that is observed in the eastern shelf may invade the western shelf thus connecting biologically both shelves in an east-to-west direction. Westerlies induce generalised upwelling off the southern Iberia Peninsula, which adds to the almost-permanent one off cape San Vicente and generates an upwelling jet that moves eastwards. Cape Santa Maria may deflect this flow by generating a cold filament that extends southward and diverts water from the western shelf to the open ocean. This pattern of circulation hampers the biological connection between shelves in the west-to-east direction, which is therefore less effective. The eastern shelf is prone to hold a cyclonic circulation cell during summer. This cell seems to be part of the reproductive strategy of fish species like anchovy with significant commercial interest in the region. The coupling between spawning and circulation is particularly beneficial under westerlies, when productivity in the eastern shelf is enhanced and the plankton is confined within the cyclonic cell. Easterlies favour oligotrophy and the westward export of plankton, which has an adverse effect on the recruitment and correlates low anchovy catches with periods of noticeable easterly intensity.

Longitudinal Biases in the Seychelles Dome Simulated by 34 Ocean-Atmosphere Coupled General Circulation Models

NASA Astrophysics Data System (ADS)

Nagura, M.; Sasaki, W.; Tozuka, T.; Luo, J.; Behera, S. K.; Yamagata, T.

2012-12-01

The upwelling dome of the southern tropical Indian Ocean is examined by using simulated results from 34 ocean-atmosphere coupled general circulation models (CGCMs) including those from the phase five of the Coupled Model Intercomparison Project (CMIP5). Among the current set of the 34 CGCMs, 12 models erroneously produce the upwelling dome in the eastern half of the basin while the observed Seychelles Dome is located in the southwestern tropical Indian Ocean (Figure 1). The annual mean Ekman pumping velocity is almost zero in the southern off-equatorial region in these models. This is in contrast with the observations that show Ekman upwelling as the cause of the Seychelles Dome. In the models that produce the dome in the eastern basin, the easterly biases are prominent along the equator in boreal summer and fall that cause shallow thermocline biases along the Java and Sumatra coasts via Kelvin wave dynamics and result in a spurious upwelling dome there. In addition, these models tend to overestimate (underestimate) the magnitude of annual (semiannual) cycle of thermocline depth variability in the dome region, which is another consequence of the easterly wind biases in boreal summer-fall. Compared to the CMIP3 models (Yokoi et al. 2009), the CMIP5 models are even worse in simulating the dome longitudes and magnitudes of annual and semiannual cycles of thermocline depth variability in the dome region. Considering the increasing need to understand regional impacts of climate modes, these results may give serious caveats to interpretation of model results and help in further model developments.; Figure 1: The longitudes of the shallowest annual-mean D20 in 5°S-12°S. The open and filled circles are for the observations and the CGCMs, respectively.

A Numerical Study of the Effect of Periodic Nutrient Supply on Pathways of Carbon in a Coastal Upwelling Regime

NASA Technical Reports Server (NTRS)

Carr, Mary-Elena

1998-01-01

A size-based ecosystem model was modified to include periodic upwelling events and used to evaluate the effect of episodic nutrient supply on the standing stock, carbon uptake, and carbon flow into mesozooplankton grazing and sinking flux in a coastal upwelling regime. Two ecosystem configurations were compared: a single food chain made up of net phytoplankton and mesozooplankton (one autotroph and one heterotroph, A1H1), and three interconnected food chains plus bacteria (three autotrophs and four heterotrophs, A3H4). The carbon pathways in the A1H1 simulations were under stronger physical control than those of the A3H4 runs, where the small size classes are not affected by frequent upwelling events. In the more complex food web simulations, the microbial pathway determines the total carbon uptake and grazing rates, and regenerated nitrogen accounts for more than half of the total primary production for periods of 20 days or longer between events. By contrast, new production, export of carbon through sinking and mesozooplankton grazing are more important in the A1H1 simulations. In the A3H4 simulations, the turnover time scale of the autotroph biomass increases as the period between upwelling events increases, because of the larger contribution of slow-growing net phytoplankton. The upwelling period was characterized for three upwelling sites from the alongshore wind speed measured by the NASA Scatterometer (NSCAT) and the corresponding model output compared with literature data. This validation exercise for three upwelling sites and a downstream embayment suggests that standing stock, carbon uptake and size fractionation were best supported by the A3H4 simulations, while the simulated sinking fluxes are not distinguishable in the two configurations.

High frequency responses of nanoplankton and microplankton to wind-driven upwelling off northern Chile

NASA Astrophysics Data System (ADS)

Aguilera, Victor; Escribano, Ruben; Herrera, Liliana

2009-08-01

Autotrophic and heterotrophic nanoplankton and microplankton vary widely in quantity and composition in coastal upwelling zones, causing a highly heterogeneous distribution of food resources for higher trophic levels. Here, we assessed daily changes in size-fractioned biomass and community structure of nanoplankton and microplankton at two upwelling sites off northern Chile, Mejillones (23°S) and Chipana (21°S), during summer 2006, winter 2006 and summer 2007 as related to changes in oceanographic conditions upon upwelling variation. We found highly-significant changes in quantity and community structure (species diversity and richness) of both nanoplankton and microplankton fractions after 3-5 days of observations. These changes were coupled to an intermittent upwelling regime reflected in the alongshore component of the wind. After a few days the whole community was modified in terms of species and size structure. Over-imposing this variability, during winter 2006 there was a strong perturbation of remote origin that substantially impacted temperature, oxygenation and stratification of the water column. This "abnormal" warming event altered the upwelling regime, but its impact on abundance and composition of the nanoplankton and microplankton fractions was uncertain. Over the short-time scale however, we found a strong coupling between daily changes in the alongshore component of wind and nanoplankton and microplankton abundances and their structure. All these findings indicate that despite the high biological productivity of this upwelling region, high frequency variation induced by wind forcing may be a major regulator of food resources (quantity and quality) for primary consumers, such as zooplankton, fish larvae and benthic organisms in the near-shore area. This high frequency variation may also impose a key constrain for prey-predator encounter rates and survival of short-lived zooplankton and invertebrate and fish larvae in the upwelling zone.

Biogeochemical and ecological impacts of boundary currents in the Indian Ocean

NASA Astrophysics Data System (ADS)

Hood, Raleigh R.; Beckley, Lynnath E.; Wiggert, Jerry D.

2017-08-01

Monsoon forcing and the unique geomorphology of the Indian Ocean basin result in complex boundary currents, which are unique in many respects. In the northern Indian Ocean, several boundary current systems reverse seasonally. For example, upwelling coincident with northward-flowing currents along the coast of Oman during the Southwest Monsoon gives rise to high productivity which also alters nutrient stoichiometry and therefore, the species composition of the resulting phytoplankton blooms. During the Northeast Monsoon most of the northern Indian Ocean boundary currents reverse and favor downwelling. Higher trophic level species have evolved behavioral responses to these seasonally changing conditions. Examples from the western Arabian Sea include vertical feeding migrations of a copepod (Calanoides carinatus) and the reproductive cycle of a large pelagic fish (Scomberomorus commerson). The impacts of these seasonal current reversals and changes in upwelling and downwelling circulations are also manifested in West Indian coastal waters, where they influence dissolved oxygen concentrations and have been implicated in massive fish kills. The winds and boundary currents reverse seasonally in the Bay of Bengal, though the associated changes in upwelling and productivity are less pronounced. Nonetheless, their effects are observed on the East Indian shelf as, for example, seasonal changes in copepod abundance and zooplankton community structure. In contrast, south of Sri Lanka seasonal reversals in the boundary currents are associated with dramatic changes in the intensity of coastal upwelling, chlorophyll concentration, and catch per unit effort of fishes. Off the coast of Java, monsoon-driven changes in the currents and upwelling strongly impact chlorophyll concentrations, seasonal vertical migrations of zooplankton, and sardine catch in Bali Strait. In the southern hemisphere the Leeuwin is a downwelling-favorable current that flows southward along western Australia, though local wind forcing can lead to transient near shore current reversals and localized coastal upwelling. The poleward direction of this eastern boundary current is unique. Due to its high kinetic energy the Leeuwin Current sheds anomalous, relatively high chlorophyll, warm-core, downwelling eddies that transport coastal diatom communities westward into open ocean waters. Variations in the Leeuwin transport and eddy generation impact many higher trophic level species including the recruitment and fate of rock lobster (Panulirus cygnus) larvae. In contrast, the transport of the Agulhas Current is very large, with sources derived from the Mozambique Channel, the East Madagascar Current and the southwest Indian Ocean sub-gyre. Dynamically, the Agulhas Current is upwelling favorable; however, the spatial distribution of prominent surface manifestations of upwelling is controlled by local wind and topographic forcing. Meanders and eddies in the Agulhas Current propagate alongshore and interact with seasonal changes in the winds and topographic features. These give rise to seasonally variable localized upwelling and downwelling circulations with commensurate changes in primary production and higher trophic level responses. Due to the strong influence of the Agulhas Current, many neritic fish species in southeast Africa coastal waters have evolved highly selective behaviors and reproductive patterns for successful retention of planktonic eggs and larvae. For example, part of the Southern African sardine (Sardinops sagax) stock undergoes a remarkable northward migration enhanced by transient cyclonic eddies in the shoreward boundary of the Agulhas Current. There is evidence from the paleoceanographic record that these currents and their biogeochemical and ecological impacts have changed significantly over glacial to interglacial timescales. These changes are explored as a means of providing insight into the potential impacts of climate change in the Indian Ocean.

Abyssal Upwelling and Downwelling and the role of boundary layers

NASA Astrophysics Data System (ADS)

McDougall, T. J.; Ferrari, R. M.

2016-02-01

The bottom-intensified mixing activity arising from the interaction of internal tides with bottom topography implies that the dianeutral advection in the ocean interior is downwards, rather than upwards as is required by continuity. The upwelling of Bottom Water through density surfaces in the deep ocean is however possible because of the sloping nature of the sea floor. A budget study of the abyss (deeper than 2000m) will be described that shows that while the upwelling of Bottom Water might be 25 Sv, this is achieved by very strong upwelling in the bottom turbulent boundary layer (of thickness 50m) of 100 Sv and strong downwelling in the ocean interior of 75 Sv. This downwelling occurs within 10 degrees of longitude of the continental boundaries. This near-boundary confined strong upwelling and downwelling clearly has implications for the Stommel-Arons circulation.

Recent Ship, Satellite and Autonomous Observations of Southern Ocean Eddies

NASA Astrophysics Data System (ADS)

Strutton, P. G.; Moreau, S.; Llort, J.; Phillips, H. E.; Patel, R.; Della Penna, A.; Langlais, C.; Lenton, A.; Matear, R.; Dawson, H.; Boyd, P. W.

2016-12-01

The Southern Ocean is the area of greatest uncertainty regarding the exchange of CO2 between the ocean and atmosphere. It is also a region of abundant energetic eddies that significantly impact circulation and biogeochemistry. In the Indian sector of the Southern Ocean, cyclonic eddies are unusual in that they are upwelling favorable, as for cyclonic eddies elsewhere, but during summer they are low in silicate and phytoplankton biomass. The reverse is true for anticyclonic eddies in that they have counter-intuitive positive chlorophyll anomalies in summer. Similar but less obvious patterns occur in the Pacific and Atlantic sectors. Using ship, satellite and autonomous observations in the region south of Australia, the physical and biogeochemical signatures of both types of eddies were documented in 2016. A cyclonic eddy that lived for seven weeks exhibited doming isopycnals indicative of upwelling. However, low surface silicate and chlorophyll concentrations appeared to be characteristic of surface waters to the south where the eddy formed. Higher chlorophyll was confined to filaments at the eddy edge. Surface nitrate and phosphate concentrations were more than sufficient for a bloom of non-siliceous phytoplankton to occur. Acoustic observations from a high resolution TRIAXUS transect through the eddy documented high zooplankton biomass in the upper 150m. It is hypothesized that a non-diatom bloom was prevented by grazing pressure, but light may have also been an important limiting resource in late summer (April). Two SOCCOM floats that were deployed in the eddy field continued to monitor the physics, nitrate and bio-optics through the transition to winter. These observations across complementary platforms have identified and then explained the reason for these unexpected biological anomalies in an energetic and globally important region of the global ocean. Understanding the role of eddies in this region will be critical to the representation of mesoscale processes in models used to simulate and project ocean biogeochemistry and carbon uptake.

Acidification mediated by a river plume and coastal upwelling on a fringing reef at the east coast of Hainan Island, Northern South China Sea

NASA Astrophysics Data System (ADS)

Dong, Xu; Huang, Haining; Zheng, Nan; Pan, Aijun; Wang, Sumin; Huo, Cheng; Zhou, Kaiwen; Lin, Hui; Ji, Weidong

2017-09-01

We investigated the dynamics of carbonate system which was greatly modulated by a river plume and coastal upwelling in July 2014 and July 2015 at the east coast of Hainan Island where a fringing reef distributes inshore. By using a three end-member mixing model, we semiquantitatively estimated the removal of dissolved inorganic carbon (DIC) mediated by biological production in the river plume and upwelled water to be 13 ± 17 and 15 ± 16 μmol kg-1, respectively. The enhanced organic production was mainly responsible for these DIC consumptions in both two regimes, however, nearly a half of DIC removal was attributed to biocalcification in the plume system while it was negligible in the upwelling system. Furthermore, the modeled results over reefs revealed that river plume and coastal upwelling were two major threats of acidification to coral communities at the east coast of Hainan Island during cruises. In comparison, the biological contribution to acidification was limited for balancing between organic production and biocalcification during July 2014 cruise, whereas the acidification was greatly intensified by organic degradation during July 2015 cruise. It was verified that naturally local acidification (physical and biological processes) played a major role in great pH decreases on a short-term scale, leading to coastal waters more vulnerable to anthropogenic "ocean acidification" (uptake of atmospheric CO2) by reducing buffering capacity of waters. Finally, effects of acidification associated with other local threats on a fringing reef were further depicted with a conceptual model.

Monsoonal upwelling in the western Arabian Sea since the middle Miocene

NASA Astrophysics Data System (ADS)

Zhuang, G.; Zhang, Y.

2017-12-01

The Asian monsoon has long been argued to be a product of the Himalaya-Tibetan Plateau, and simulation experiments have confirmed the key role of the Himalaya-Tibetan Plateau in transforming regional atmospheric and oceanic circulations. However, temporal constraints on the strengthening of the Asian monsoon inferred from foraminifer isotopic and faunal data and terrestrial climatic and ecological records are inconsistent with each other, which has obscured the tectonic-climatic linkage. In particular, discriminating the post-middle Miocene global cooling from the monsoon upwelling cooling is critical, but poorly understood due to the lack of adequate constraints for monsoonal upwelling. Here we present new middle to late Miocene biomarker-based reconstructions of sea-surface temperature (SST) for the western Arabian Sea. Our new SSTs capture a long-term ocean cooling since ca. 14.8 Ma and a major drop in SST in the period 11-10 Ma after which the SSTs reached similar values as the Holocene. The new SST record is consistent with planktonic foraminifer, siliceous biota, and geochemical tracer studies, suggestive of ocean cooling and high productivity associated with monsoonal upwelling. The 11-10 Ma ocean cooling is not clearly expressed in other tropical oceans, indicating that the ocean cooling in the western Arabian Sea is not a simple reflection of global cooling. We interpret the 11-10 Ma ocean cooling as representing the establishment of monsoonal upwelling in the western Arabian Sea, triggered by strong cyclonic activities as a result of the Neogene outward expansion of the Himalaya-Tibetan Plateau.

Standoff Detection of Uranium and its Isotopes by Femtosecond Filament Laser Ablation Molecular Isotopic Spectrometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hartig, Kyle C.; Ghebregziabher, Isaac; Jovanovic, Igor

The ability to perform not only elementally but also isotopically sensitive detection and analysis at standoff distances is important for remote sensing applications in diverse ares, such as nuclear nonproliferation, environmental monitoring, geophysics, and planetary science. We demonstrate isotopically sensitive real-time standoff detection of uranium by the use of femtosecond filament-induced laser ablation molecular isotopic spectrometry. A uranium oxide molecular emission isotope shift of 0.05 ± 0.007 nm is reported at 593.6 nm. We implement both spectroscopic and acoustic diagnostics to characterize the properties of uranium plasma generated at different filament- uranium interaction points. The resulting uranium oxide emission exhibitsmore » a nearly constant signal-to-background ratio over the length of the filament, unlike the uranium atomic and ionic emission, for which the signal-to-background ratio varies significantly along the filament propagation. This is explained by the different rates of increase of plasma density and uranium oxide density along the filament length resulting from spectral and temporal evolution of the filament along its propagation. Lastly, the results provide a basis for the optimal use of filaments for standoff detection and analysis of uranium isotopes and indicate the potential of the technique for a wider range of remote sensing applications that require isotopic sensitivity.« less

Standoff Detection of Uranium and its Isotopes by Femtosecond Filament Laser Ablation Molecular Isotopic Spectrometry

PubMed Central

Hartig, Kyle C.; Ghebregziabher, Isaac; Jovanovic, Igor

2017-01-01

The ability to perform not only elementally but also isotopically sensitive detection and analysis at standoff distances is impor-tant for remote sensing applications in diverse ares, such as nuclear nonproliferation, environmental monitoring, geophysics, and planetary science. We demonstrate isotopically sensitive real-time standoff detection of uranium by the use of femtosecond filament-induced laser ablation molecular isotopic spectrometry. A uranium oxide molecular emission isotope shift of 0.05 ± 0.007 nm is reported at 593.6 nm. We implement both spectroscopic and acoustic diagnostics to characterize the properties of uranium plasma generated at different filament-uranium interaction points. The resulting uranium oxide emis-sion exhibits a nearly constant signal-to-background ratio over the length of the filament, unlike the uranium atomic and ionic emission, for which the signal-to-background ratio varies significantly along the filament propagation. This is explained by the different rates of increase of plasma density and uranium oxide density along the filament length resulting from spectral and temporal evolution of the filament along its propagation. The results provide a basis for the optimal use of filaments for standoff detection and analysis of uranium isotopes and indicate the potential of the technique for a wider range of remote sensing applications that require isotopic sensitivity. PMID:28272450

Standoff Detection of Uranium and its Isotopes by Femtosecond Filament Laser Ablation Molecular Isotopic Spectrometry

DOE PAGES

Hartig, Kyle C.; Ghebregziabher, Isaac; Jovanovic, Igor

2017-03-08

The ability to perform not only elementally but also isotopically sensitive detection and analysis at standoff distances is important for remote sensing applications in diverse ares, such as nuclear nonproliferation, environmental monitoring, geophysics, and planetary science. We demonstrate isotopically sensitive real-time standoff detection of uranium by the use of femtosecond filament-induced laser ablation molecular isotopic spectrometry. A uranium oxide molecular emission isotope shift of 0.05 ± 0.007 nm is reported at 593.6 nm. We implement both spectroscopic and acoustic diagnostics to characterize the properties of uranium plasma generated at different filament- uranium interaction points. The resulting uranium oxide emission exhibitsmore » a nearly constant signal-to-background ratio over the length of the filament, unlike the uranium atomic and ionic emission, for which the signal-to-background ratio varies significantly along the filament propagation. This is explained by the different rates of increase of plasma density and uranium oxide density along the filament length resulting from spectral and temporal evolution of the filament along its propagation. Lastly, the results provide a basis for the optimal use of filaments for standoff detection and analysis of uranium isotopes and indicate the potential of the technique for a wider range of remote sensing applications that require isotopic sensitivity.« less

Standoff Detection of Uranium and its Isotopes by Femtosecond Filament Laser Ablation Molecular Isotopic Spectrometry

NASA Astrophysics Data System (ADS)

Hartig, Kyle C.; Ghebregziabher, Isaac; Jovanovic, Igor

2017-03-01

The ability to perform not only elementally but also isotopically sensitive detection and analysis at standoff distances is impor-tant for remote sensing applications in diverse ares, such as nuclear nonproliferation, environmental monitoring, geophysics, and planetary science. We demonstrate isotopically sensitive real-time standoff detection of uranium by the use of femtosecond filament-induced laser ablation molecular isotopic spectrometry. A uranium oxide molecular emission isotope shift of 0.05 ± 0.007 nm is reported at 593.6 nm. We implement both spectroscopic and acoustic diagnostics to characterize the properties of uranium plasma generated at different filament-uranium interaction points. The resulting uranium oxide emis-sion exhibits a nearly constant signal-to-background ratio over the length of the filament, unlike the uranium atomic and ionic emission, for which the signal-to-background ratio varies significantly along the filament propagation. This is explained by the different rates of increase of plasma density and uranium oxide density along the filament length resulting from spectral and temporal evolution of the filament along its propagation. The results provide a basis for the optimal use of filaments for standoff detection and analysis of uranium isotopes and indicate the potential of the technique for a wider range of remote sensing applications that require isotopic sensitivity.

THE CONTRACTION OF OVERLYING CORONAL LOOP AND THE ROTATING MOTION OF A SIGMOID FILAMENT DURING ITS ERUPTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, X. L.; Qu, Z. Q.; Xue, Z. K.

We present an observation of overlying coronal loop contraction and rotating motion of the sigmoid filament during its eruption on 2012 May 22 observed by the Solar Dynamics Observatory (SDO). Our results show that the twist can be transported into the filament from the lower atmosphere to the higher atmosphere. The successive contraction of the coronal loops was due to a suddenly reduced magnetic pressure underneath the filament, which was caused by the rising of the filament. Before the sigmoid filament eruption, there was a counterclockwise flow in the photosphere at the right feet of the filament and the contractionmore » loops and a convergence flow at the left foot of the filament. The hot and cool materials have inverse motion along the filament before the filament eruption. Moreover, two coronal loops overlying the filament first experienced brightening, expansion, and contraction successively. At the beginning of the rising and rotation of the left part of the filament, the second coronal loop exhibited rapid contraction. The top of the second coronal loop also showed counterclockwise rotation during the contraction process. After the contraction of the second loop, the left part of the filament rotated counterclockwise and expanded toward the right of NOAA AR 11485. During the filament expansion, the right part of the filament also exhibited counterclockwise rotation like a tornado.« less

The Contraction of Overlying Coronal Loop and the Rotating Motion of a Sigmoid Filament during Its Eruption

NASA Astrophysics Data System (ADS)

Yan, X. L.; Pan, G. M.; Liu, J. H.; Qu, Z. Q.; Xue, Z. K.; Deng, L. H.; Ma, L.; Kong, D. F.

2013-06-01

We present an observation of overlying coronal loop contraction and rotating motion of the sigmoid filament during its eruption on 2012 May 22 observed by the Solar Dynamics Observatory (SDO). Our results show that the twist can be transported into the filament from the lower atmosphere to the higher atmosphere. The successive contraction of the coronal loops was due to a suddenly reduced magnetic pressure underneath the filament, which was caused by the rising of the filament. Before the sigmoid filament eruption, there was a counterclockwise flow in the photosphere at the right feet of the filament and the contraction loops and a convergence flow at the left foot of the filament. The hot and cool materials have inverse motion along the filament before the filament eruption. Moreover, two coronal loops overlying the filament first experienced brightening, expansion, and contraction successively. At the beginning of the rising and rotation of the left part of the filament, the second coronal loop exhibited rapid contraction. The top of the second coronal loop also showed counterclockwise rotation during the contraction process. After the contraction of the second loop, the left part of the filament rotated counterclockwise and expanded toward the right of NOAA AR 11485. During the filament expansion, the right part of the filament also exhibited counterclockwise rotation like a tornado.

How capping protein enhances actin filament growth and nucleation on biomimetic beads.

PubMed

Wang, Ruizhe; Carlsson, Anders E

2015-11-25

Capping protein (CP), which caps the growing ends of actin filaments, accelerates actin-based motility. Recent experiments on biomimetic beads have shown that CP also enhances the rate of actin filament nucleation. Proposed explanations for these phenomena include (i) the actin funneling hypothesis (AFH), in which the presence of CP increases the free-actin concentration, and (ii) the monomer gating model, in which CP binding to actin filament barbed ends makes more monomers available for filament nucleation. To establish how CP increases the rates of filament elongation and nucleation on biomimetic beads, we perform a quantitative modeling analysis of actin polymerization, using rate equations that include actin filament nucleation, polymerization and capping, as modified by monomer depletion near the surface of the bead. With one adjustable parameter, our simulation results match previously measured time courses of polymerized actin and filament number. The results support a version of the AFH where CP increases the local actin monomer concentration at the bead surface, but leaves the global free-actin concentration nearly constant. Because the rate of filament nucleation increases with the monomer concentration, the increased local monomer concentration enhances actin filament nucleation. We derive a closed-form formula for the characteristic CP concentration where the local free-actin concentration reaches half the bulk value, and find it to be comparable to the global Arp2/3 complex concentration. We also propose an experimental protocol for distinguishing branching nucleation of filaments from spontaneous nucleation.

Penetration of Magnetosheath Plasma into Dayside Magnetosphere. 2. ; Magnetic Field in Plasma Filaments

NASA Technical Reports Server (NTRS)

Lyatsky, Wladislaw; Pollock, Craig; Goldstein, Melvyn L.; Lyatskaya, Sonya Inna; Avanov, Levon Albert

2016-01-01

In this paper, we examined plasma structures (filaments), observed in the dayside magnetosphere but containing magnetosheath plasma. These filaments show the stable antisunward motion (while the ambient magnetospheric plasma moved in the opposite direction) and the existence of a strip of magnetospheric plasma, separating these filaments from the magnetosheath. These results, however, contradict both theoretical studies and simulations by Schindler (1979), Ma et al. (1991), Dai and Woodward (1994, 1998), and other researchers, who reported that the motion of such filaments through the magnetosphere is possible only when their magnetic field is directed very close to the ambient magnetic field, which is not the situation that is observed. In this study, we show that this seeming contradiction may be related to different events as the theoretical studies and simulations are related to the case when the filament magnetic field is about aligned with filament orientation, whereas the observations show that the magnetic field in these filaments may be rotating. In this case, the rotating magnetic field, changing incessantly its direction, drastically affects the penetration of plasma filaments into the magnetosphere. In this case, the filaments with rotating magnetic field, even if in each moment it is significantly inclined to the ambient magnetic field, may propagate through the magnetosphere, if their average (for the rotation period) magnetic field is aligned with the ambient magnetic field. This shows that neglecting the rotation of magnetic field in these filaments may lead to wrong results.

A penny-shaped crack in a filament-reinforced matrix. I - The filament model. II - The crack problem

NASA Technical Reports Server (NTRS)

Erdogan, F.; Pacella, A. H.

1974-01-01

The study deals with the elastostatic problem of a penny-shaped crack in an elastic matrix which is reinforced by filaments or fibers perpendicular to the plane of the crack. An elastic filament model is first developed, followed by consideration of the application of the model to the penny-shaped crack problem in which the filaments of finite length are asymmetrically distributed around the crack. Since the primary interest is in the application of the results to studies relating to the fracture of fiber or filament-reinforced composites and reinforced concrete, the main emphasis of the study is on the evaluation of the stress intensity factor along the periphery of the crack, the stresses in the filaments or fibers, and the interface shear between the matrix and the filaments or fibers. Using the filament model developed, the elastostatic interaction problem between a penny-shaped crack and a slender inclusion or filament in an elastic matrix is formulated.

Terahertz waves radiated from two noncollinear femtosecond plasma filaments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Du, Hai-Wei; Hoshina, Hiromichi; Otani, Chiko, E-mail: otani@riken.jp

2015-11-23

Terahertz (THz) waves radiated from two noncollinear femtosecond plasma filaments with a crossing angle of 25° are investigated. The irradiated THz waves from the crossing filaments show a small THz pulse after the main THz pulse, which was not observed in those from single-filament scheme. Since the position of the small THz pulse changes with the time-delay of two filaments, this phenomenon can be explained by a model in which the small THz pulse is from the second filament. The denser plasma in the overlap region of the filaments changes the movement of space charges in the plasma, thereby changingmore » the angular distribution of THz radiation. As a result, this schematic induces some THz wave from the second filament to propagate along the path of the THz wave from the first filament. Thus, this schematic alters the direction of the THz radiation from the filamentation, which can be used in THz wave remote sensing.« less

Isotopic constraints on the genesis and evolution of basanitic lavas at Haleakala, Island of Maui, Hawaii

NASA Astrophysics Data System (ADS)

Phillips, Erin H.; Sims, Kenneth W. W.; Sherrod, David R.; Salters, Vincent J. M.; Blusztajn, Jurek; Dulai, Henrietta

2016-12-01

To understand the dynamics of solid mantle upwelling and melting in the Hawaiian plume, we present new major and trace element data, Nd, Sr, Hf, and Pb isotopic compositions, and 238U-230Th-226Ra and 235U-231Pa-227Ac activities for 13 Haleakala Crater nepheline normative basanites with ages ranging from ∼900 to 4100 yr B.P. These basanites of the Hana Volcanics exhibit an enrichment in incompatible trace elements and a more depleted isotopic signature than similarly aged Hawaiian shield lavas from Kilauea and Mauna Loa. Here we posit that as the Pacific lithosphere beneath the active shield volcanoes moves away from the center of the Hawaiian plume, increased incorporation of an intrinsic depleted component with relatively low 206Pb/204Pb produces the source of the basanites of the Hana Volcanics. Haleakala Crater basanites have average (230Th/238U) of 1.23 (n = 13), average age-corrected (226Ra/230Th) of 1.25 (n = 13), and average (231Pa/235U) of 1.67 (n = 4), significantly higher than Kilauea and Mauna Loa tholeiites. U-series modeling shows that solid mantle upwelling velocity for Haleakala Crater basanites ranges from ∼0.7 to 1.0 cm/yr, compared to ∼10 to 20 cm/yr for tholeiites and ∼1 to 2 cm/yr for alkali basalts. These modeling results indicate that solid mantle upwelling rates and porosity of the melting zone are lower for Hana Volcanics basanites than for shield-stage tholeiites from Kilauea and Mauna Loa and alkali basalts from Hualalai. The melting rate, which is directly proportional to both the solid mantle upwelling rate and the degree of melting, is therefore greatest in the center of the Hawaiian plume and lower on its periphery. Our results indicate that solid mantle upwelling velocity is at least 10 times higher at the center of the plume than at its periphery under Haleakala.

Measuring Filament Orientation: A New Quantitative, Local Approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Green, C.-E.; Cunningham, M. R.; Jones, P. A.

The relative orientation between filamentary structures in molecular clouds and the ambient magnetic field provides insight into filament formation and stability. To calculate the relative orientation, a measurement of filament orientation is first required. We propose a new method to calculate the orientation of the one-pixel-wide filament skeleton that is output by filament identification algorithms such as filfinder. We derive the local filament orientation from the direction of the intensity gradient in the skeleton image using the Sobel filter and a few simple post-processing steps. We call this the “Sobel-gradient method.” The resulting filament orientation map can be compared quantitativelymore » on a local scale with the magnetic field orientation map to then find the relative orientation of the filament with respect to the magnetic field at each point along the filament. It can also be used for constructing radial profiles for filament width fitting. The proposed method facilitates automation in analyses of filament skeletons, which is imperative in this era of “big data.”.« less

N2O production by nitrifier denitrification in the Benguela Upwelling System

NASA Astrophysics Data System (ADS)

Frame, C. H.; Hou, L.; Lehmann, M. F.

2014-12-01

The Benguela upwelling system off the coast of southwestern Africa is an important zone of marine N2O production whose upwelling rates vary seasonally. Here we present N2O stable isotopic and isotopomeric data collected during a period of high upwelling (September 2013) and low upwelling (January 2014). During both periods, 15N-nitrite and 15N-ammonium tracer inucbation experiments were used to investigate N2O production by ammonia oxidizing microorganisms in the top 150m of the water column. N2O production from 15N-ammonium was not measurable during these incubations. However, we detected N2O production from 15N-nitrite, suggesting that nitrifier denitrification is a source of shallow N2O in this region. Furthermore, decreasing the pH of the incubation water enhanced the amount of N2O produced, suggesting that upwelling of CO2-rich/low-pH deep water may enhance N2O production in this region. Finally, we present our incubation data in the larger context of the N2O and nitrite isotopic and concentration profiles, with an eye toward comparing incubation-based N2O production rates with profile-based estimates.

Transition of Femtosecond-Filament-Solid Interactions from Single to Multiple Filament Regime

DOE PAGES

Skrodzki, P. J.; Burger, M.; Jovanovic, I.

2017-10-06

High-peak-power fs-laser filaments offer unique characteristics attractive to remote sensing via techniques such as remote laser-induced breakdown spectroscopy (R-LIBS). The dynamics of several ablation mechanisms following the interaction between a filament and a solid determines the emission strength and reproducibility of target plasma, which is of relevance for R-LIBS applications. Here, we investigate the space- and time-resolved dynamics of ionic and atomic emission from copper as well as the surrounding atmosphere in order to understand limitations of fs-filament-ablation for standoff energy delivery. Furthermore, we probe the shock front produced from filament-target interaction using time-resolved shadowgraphy and infer laser-material coupling efficienciesmore » for both single and multiple filament regimes through analysis of shock expansion with the Sedov model for point detonation. The results provide insight into plasma structure for the range of peak powers up to 30 times the critical power for filamentation P cr. Despite the stochastic nucleation of multiple filaments at peak-powers greater than 16 P cr, emission of ionic and neutral species increases with pump beam intensity, and short-lived nitrogen emission originating from the ambient is consistently observed. Ultimately, results suggest favorable scaling of emission intensity from target species on the laser pump energy, furthering the prospects for use of filament-solid interactions for remote sensing.« less

Transition of Femtosecond-Filament-Solid Interactions from Single to Multiple Filament Regime

DOE Office of Scientific and Technical Information (OSTI.GOV)

Skrodzki, P. J.; Burger, M.; Jovanovic, I.

High-peak-power fs-laser filaments offer unique characteristics attractive to remote sensing via techniques such as remote laser-induced breakdown spectroscopy (R-LIBS). The dynamics of several ablation mechanisms following the interaction between a filament and a solid determines the emission strength and reproducibility of target plasma, which is of relevance for R-LIBS applications. Here, we investigate the space- and time-resolved dynamics of ionic and atomic emission from copper as well as the surrounding atmosphere in order to understand limitations of fs-filament-ablation for standoff energy delivery. Furthermore, we probe the shock front produced from filament-target interaction using time-resolved shadowgraphy and infer laser-material coupling efficienciesmore » for both single and multiple filament regimes through analysis of shock expansion with the Sedov model for point detonation. The results provide insight into plasma structure for the range of peak powers up to 30 times the critical power for filamentation P cr. Despite the stochastic nucleation of multiple filaments at peak-powers greater than 16 P cr, emission of ionic and neutral species increases with pump beam intensity, and short-lived nitrogen emission originating from the ambient is consistently observed. Ultimately, results suggest favorable scaling of emission intensity from target species on the laser pump energy, furthering the prospects for use of filament-solid interactions for remote sensing.« less

Dramatic enhancement of supercontinuum generation in elliptically-polarized laser filaments

PubMed Central

Rostami, Shermineh; Chini, Michael; Lim, Khan; Palastro, John P.; Durand, Magali; Diels, Jean-Claude; Arissian, Ladan; Baudelet, Matthieu; Richardson, Martin

2016-01-01

Broadband laser sources based on supercontinuum generation in femtosecond laser filamentation have enabled applications from stand-off sensing and spectroscopy to the generation and self-compression of high-energy few-cycle pulses. Filamentation relies on the dynamic balance between self-focusing and plasma defocusing – mediated by the Kerr nonlinearity and multiphoton or tunnel ionization, respectively. The filament properties, including the supercontinuum generation, are therefore highly sensitive to the properties of both the laser source and the propagation medium. Here, we report the anomalous spectral broadening of the supercontinuum for filamentation in molecular gases, which is observed for specific elliptical polarization states of the input laser pulse. The resulting spectrum is accompanied by a modification of the supercontinuum polarization state and a lengthening of the filament plasma column. Our experimental results and accompanying simulations suggest that rotational dynamics of diatomic molecules play an essential role in filamentation-induced supercontinuum generation, which can be controlled with polarization ellipticity. PMID:26847427

On the Geometrical Optics Approach in the Theory of Freely-Localized Microwave Gas Breakdown

NASA Astrophysics Data System (ADS)

Shapiro, Michael; Schaub, Samuel; Hummelt, Jason; Temkin, Richard; Semenov, Vladimir

2015-11-01

Large filamentary arrays of high pressure gas microwave breakdown have been experimentally studied at MIT using a 110 GHz, 1.5 MW pulsed gyrotron. The experiments have been modeled by other groups using numerical codes. The plasma density distribution in the filaments can be as well analytically calculated using the geometrical optics approach neglecting plasma diffusion. The field outside the filament is a solution of an inverse electromagnetic problem. The solutions are found for the cylindrical and spherical filaments and for the multi-layered planar filaments with a finite plasma density at the boundaries. We present new results of this theory showing a variety of filaments with complex shapes. The solutions for plasma density distribution are found with a zero plasma density at the boundary of the filament. Therefore, to solve the inverse problem within the geometrical optics approximation, it can be assumed that there is no reflection from the filament. The results of this research are useful for modeling future MIT experiments.

Effects of thermal noise on the transitional dynamics of an inextensible elastic filament in stagnation flow.

PubMed

Deng, Mingge; Grinberg, Leopold; Caswell, Bruce; Karniadakis, George Em

2015-06-28

We investigate the dynamics of a single inextensible elastic filament subject to anisotropic friction in a viscous stagnation-point flow, by employing both a continuum model represented by Langevin type stochastic partial differential equations (SPDEs) and a dissipative particle dynamics (DPD) method. Unlike previous works, the filament is free to rotate and the tension along the filament is determined by the local inextensible constraint. The kinematics of the filament is recorded and studied with normal modes analysis. The results show that the filament displays an instability induced by negative tension, which is analogous to Euler buckling of a beam. Symmetry breaking of normal modes dynamics and stretch-coil transitions are observed above the threshold of the buckling instability point. Furthermore, both temporal and spatial noise are amplified resulting from the interaction of thermal fluctuations and nonlinear filament dynamics. Specifically, the spatial noise is amplified with even normal modes being excited due to symmetry breaking, while the temporal noise is amplified with increasing time correlation length and variance.

The making of a productivity hotspot in the coastal ocean.

PubMed

Wingfield, Dana K; Peckham, S Hoyt; Foley, David G; Palacios, Daniel M; Lavaniegos, Bertha E; Durazo, Reginaldo; Nichols, Wallace J; Croll, Donald A; Bograd, Steven J

2011-01-01

Highly productive hotspots in the ocean often occur where complex physical forcing mechanisms lead to aggregation of primary and secondary producers. Understanding how hotspots persist, however, requires combining knowledge of the spatio-temporal linkages between geomorphology, physical forcing, and biological responses with the physiological requirements and movement of top predators. Here we integrate remotely sensed oceanography, ship surveys, and satellite telemetry to show how local geomorphology interacts with physical forcing to create a region with locally enhanced upwelling and an adjacent upwelling shadow that promotes retentive circulation, enhanced year-round primary production, and prey aggregation. These conditions provide an area within the upwelling shadow where physiologically optimal water temperatures can be found adjacent to a region of enhanced prey availability, resulting in a foraging hotspot for loggerhead sea turtles (Caretta caretta) off the Baja California peninsula, Mexico. We have identified the set of conditions that lead to a persistent top predator hotspot, which increases our understanding of how highly migratory species exploit productive regions of the ocean. These results will aid in the development of spatially and environmentally explicit management strategies for marine species of conservation concern.

Are Superplumes a Myth?

NASA Astrophysics Data System (ADS)

Steinberger, Bernhard; Conrad, Clinton

2017-04-01

Two large seismically slow lower mantle regions beneath the Pacific and Africa are sometimes referred to as "superplumes". This names evokes associations of large-scale active upwellings, however it is not clear whether these are real, or rather just regular mantle plumes occur more frequently in these regions. Here we study the implications of new results on dynamic topography, which would be associated with active upwellings, on this question. Recently, Hoggard et al. (2016) developed a detailed model of marine residual topography, after subtracting isostatic crustal topography. Combining this with results from continents, a global model can be expanded in spherical harmonics. Comparison with dynamic topography derived from mantle flow models inferred from seismic tomography (Steinberger, 2016) yields overall good agreement and similar power spectra, except at spherical harmonic degree two where mantle flow models predict about six times as much power as is inferred from observations: Mantle flow models feature two large-scale antipodal upwellings at the seismically slow regions, whereas the actual topography gives only little indication of these. We will discuss here what this discrepancy could possibly mean and how it could be resolved.

Evaluation of the saturation state of Aragonite, at Baja California Coast, Mexico

NASA Astrophysics Data System (ADS)

Oliva, N. L.; Hernandez, J. M.; Camacho, V.; Deldagillo, F.; Torres, V.; Siqueiros-Valencia, A.; Castro, R.

2012-12-01

The carbonate ion is in excess in the surface waters of the world's ocean, and is necessary for the formation of carbonate structures such as oyster shells and echinoderm skeletons. Seasonal upwelling in the California Current system brings dense water with high partial pressure of carbon dioxide to the sea surface and into contact with the atmosphere in the near shore. In order to evaluate the saturation state of Aragonite (ΩA), from November 2009 to November 2011, biweekly monitoring of dissolved inorganic carbon (CID), total alkalinity (TA), temperature (T) and salinity (S), in the intertidal zone at "Arbolitos" was conducted. During the same period, a mooring buoy located 3 km from Arbolitos recorded data every 3 hours for T and carbon dioxide partial pressure (pCO2), at the sea and in the air 1 meter above the sea surface.The ΩA was calculated for both study sites where upwelling events occurred during the spring-summer months. The data at both Arbolitos and mooring buoy shows that during the upwelling season maximum DIC concentration (2150μmol kg -1) and maximum pCO2 (863 μatm) correspond to the lowest temperature (11°C) and ΩA values (1; equilibrium). During the ten upwelling events identified (T < 15 °C, pCO2 > 387 μatm), the ΩA values (3 to 1) were not lower than the saturation limit (value of 1).The results show that the calcifying organisms in this region are persisting in an environment with variable ΩA conditions. It was determined that the longer the duration of the upwelling event, the lower the ΩA value, and the higher the change in pCO2. The ΩA interval (approximately 3 to 1) is not the same from year to year. This suggests interannual variations in upwelling, possibly due to El Niño (present during the first six months of 2010), and La Niña conditions (from July 2010 to November 2011).; t; Characteristics of the ten events of upwelling, at arbolitos and at the moorign buoy. For both study sites it shows the duration, pCO2, ΩA y pH values.

Seasonal cycle of the mixed-layer heat and freshwater budget in the eastern tropical Atlantic

NASA Astrophysics Data System (ADS)

Rath, Willi; Dengler, Marcus; Lüdke, Jan; Schmidtko, Sunke; Schlundt, Michael; Brandt, Peter; Partners, Preface

2016-04-01

A new seasonal mixed-layer heat flux climatology is used to explore the mechanisms driving seasonal variability of sea surface temperature and salinity in the eastern tropical Atlantic (ETA) with a focus on the eastern boundary upwelling regions. Until recently, large areas at the continental margins of the ETA were not well covered by publically available hydrographic data hampering a detailed understanding of the involved processes. In a collaborative effort between African and European partners within the EU-funded PREFACE program, a new seasonal climatology for different components of the heat and freshwater budget was compiled for the ETA using all publically available hydrographic data sets and a large trove of previously not-publically available hydrographic measurements from the territorial waters of western African countries, either from national programs or from the FAO supported EAF-Nansen program. The publically available data includes hydrographic data from global data repositories including most recent ARGO floats and glider measurements. This data set was complemented by velocity data from surface drifter and ARGO floats to allow determining horizontal heat and freshwater advection. Monthly means of air-sea heat fluxes were derived from the TropFlux climatology while precipitation rates were derived from monthly mean fields of the Global Precipitation Climatology Project. Finally, microstructure data from individual measurement campaigns allow estimating diapycnal heat and salt fluxes for certain regions during specific months. A detailed analysis of the seasonal cycle of mixed-layer heat and freshwater balance in previously poorly covered regions in the eastern tropical Atlantic upwelling is presented. In both eastern boundary upwelling region, off Senegal/Mauritania and off Angola/Namibia, average net surface heat fluxes warm the mixed layer at a rate between 50 and 80 W/m2 with maxima in the respective summer seasons. Horizontal advection contributed to cooling of the mixed layer but a residual cooling term remains in both upwelling regions. A surprising result is that this residual is largest in the Angolan upwelling region, where upwelling-favourable winds are generally weaker than off Namibia and in the north-eastern upwelling region. The contributions of windstress-derived vertical advection and diapycnal heat and freshwater fluxes are discussed. In addition, the TropFlux climatology is evaluated against radiative and turbulent ocean-atmosphere heat and freshwater fluxes derived from ship-board observations.

Assessing the applicability of organic SST proxies in an upwelling region (Arabian Sea)

NASA Astrophysics Data System (ADS)

Lattaud, J.; van Erk, M. R.; Reichart, G. J.; Schulz, H.; S Sinninghe Damsté, J.; Schouten, S.

2017-12-01

Multiple organic proxies have the potential to reconstruct sea surface temperature (SST), but their behaviour is not completely understood within upwelling areas. This holds in particular for the recently developed Long chain Diol Index1 (LDI), based on the ratio of 1,15-diols over 1,13-diols, both likely produced by Eustigmatophytes. We tested the applicability of the LDI by comparing it to the more established temperature proxies TEX86 and Uk¢37 in a sediment core (spanning the last 76 ky) from the northern Arabian Sea and in surface sediments (Pakistan margin). In the surface sediments, Uk¢37- and LDI-SSTs agree well with annual mean SST, but the TEX86-SST substantially overestimates SST. A better agreement is observed, when the 0-200 m TEX86 calibration is used, suggesting TEX86 reflects subsurface temperatures. The results from the sediment core reveal that the SST records differ in absolute reconstructed temperature and show different patterns. TEX86 subsurface temperatures show a continuous increase toward the Holocene and no stadial/interstadial differences, while the LDI-SST is constant around 26°C with the exception of some short-term cooling events during periods of intensified upwelling. The Uk¢37-SST varies between 22 and 26°C and follows the global δ18Obenthic foram curve and thus is representing mean annual SST in this region3. During stadials, the reduced monsoon and low upwelling intensity resulted in warming of the subsurface waters2, as indicated by higher TEX86 temperatures, while global cooling led to colder surface waters as reflected in lower Uk¢37-SSTs, thus reducing the thermal gradient in the water column2. During the interstadials, which are periods of strong upwelling3, there is a high proportion of 1,14-diols (>40%). This probably disturbs the LDI-SST signal because the diatoms that produce the 1,14-diols are also generating small amounts of the 1,13-diols4. This suggests that care has to be taken in applying the LDI in upwelling regions. References 1Rampen et al., 2012 2Tierney et al., 2015 3Emeis et al., 1995 4Rampen et al., 2007

Phytoplankton and nutrient distributions in a front-eddy area adjacent to the coastal upwelling zone off Concepcion (Chile): implications for ecosystem productivity.

NASA Astrophysics Data System (ADS)

Morales, Carmen; Anabalón, Valeria; Hormazábal, Samuel; Cornejo, Marcela; Bento, Joaquim; Silva, Nelson

2016-04-01

The impact that sub-mesoscale (1-10 km) to mesocale (50-100 km) oceanographic variability has on plankton and nutrient distributions (horizontal and vertical) in the coastal upwelling and transition zones off Concepcion was the focus of this study. Satellite time-series data (wind, sea-surface temperature (SST), and altimetry) were used to understand the dynamic context of in situ data derived from a short-term front survey (3 d) during the upwelling period (3-6 February, 2014). The survey included two transects perpendicular to the coast, covering the shelf and shelf-break areas just north of Punta Lavapie, a main upwelling center (˜37° S). Wind and SST time-series data indicated that the survey was undertaken just after a moderate upwelling event (end of January) which lead to a relaxation phase during early February. A submesoscale thermal front was detected previous to and during the survey and results from an eddy tracking algorithm based on altimetry data indicated that this front (F1) was flanked on its oceanic side by an anticyclonic, mesoscale eddy (M1), which was ˜25 d old at the sampling time. M1 strengthened the thermal gradient of F1 by bringing warmer oceanic water nearer to the colder coastal upwelling zone. The distributions of hydrographic variables and nutrients in the water column (<300 m depth) also denoted these two features. Phytoplankton biomass (Chl-a) and diatom abundance were highest in the surface layer (<20 m depth) between the coast and F1, with primary maxima in the latter, whereas they were highest at the subsurface (20-40 m depth) towards M1 and associated with secondary maxima. The distribution of dominant diatoms in the top layer (<100 m depth) indicated that both coastal and oceanic species were aggregated at F1 and in M1. These results suggest that the front-eddy interaction creates a complex field of submesoscale processes in the top layer, including vertical nutrient injections and lateral stirring, which contributes to the exportation of coastal communities to the open ocean in this region. We discuss how this interaction might affect ecosystem productivity in the coastal band.

Transformation of Deep Water Masses Along Lagrangian Upwelling Pathways in the Southern Ocean

NASA Astrophysics Data System (ADS)

Tamsitt, V.; Abernathey, R. P.; Mazloff, M. R.; Wang, J.; Talley, L. D.

2018-03-01

Upwelling of northern deep waters in the Southern Ocean is fundamentally important for the closure of the global meridional overturning circulation and delivers carbon and nutrient-rich deep waters to the sea surface. We quantify water mass transformation along upwelling pathways originating in the Atlantic, Indian, and Pacific and ending at the surface of the Southern Ocean using Lagrangian trajectories in an eddy-permitting ocean state estimate. Recent related work shows that upwelling in the interior below about 400 m depth is localized at hot spots associated with major topographic features in the path of the Antarctic Circumpolar Current, while upwelling through the surface layer is more broadly distributed. In the ocean interior upwelling is largely isopycnal; Atlantic and to a lesser extent Indian Deep Waters cool and freshen while Pacific deep waters are more stable, leading to a homogenization of water mass properties. As upwelling water approaches the mixed layer, there is net strong transformation toward lighter densities due to mixing of freshwater, but there is a divergence in the density distribution as Upper Circumpolar Deep Water tends become lighter and dense Lower Circumpolar Deep Water tends to become denser. The spatial distribution of transformation shows more rapid transformation at eddy hot spots associated with major topography where density gradients are enhanced; however, the majority of cumulative density change along trajectories is achieved by background mixing. We compare the Lagrangian analysis to diagnosed Eulerian water mass transformation to attribute the mechanisms leading to the observed transformation.

Co-option of the polarity gene network shapes filament morphology in angiosperms

PubMed Central

de Almeida, Ana Maria Rocha; Yockteng, Roxana; Schnable, James; Alvarez-Buylla, Elena R.; Freeling, Michael; Specht, Chelsea D.

2014-01-01

The molecular genetic mechanisms underlying abaxial-adaxial polarity in plants have been studied as a property of lateral and flattened organs, such as leaves. In leaves, laminar expansion occurs as a result of balanced abaxial-adaxial gene expression. Over- or under- expression of either abaxializing or adaxializing genes inhibits laminar growth, resulting in a mutant radialized phenotype. Here, we show that co-option of the abaxial-adaxial polarity gene network plays a role in the evolution of stamen filament morphology in angiosperms. RNA-Seq data from species bearing laminar (flattened) or radial (cylindrical) filaments demonstrates that species with laminar filaments exhibit balanced expression of abaxial-adaxial (ab-ad) genes, while overexpression of a YABBY gene is found in species with radial filaments. This result suggests that unbalanced expression of ab-ad genes results in inhibition of laminar outgrowth, leading to a radially symmetric structure as found in many angiosperm filaments. We anticipate that co-option of the polarity gene network is a fundamental mechanism shaping many aspects of plant morphology during angiosperm evolution. PMID:25168962

Co-option of the polarity gene network shapes filament morphology in angiosperms.

PubMed

de Almeida, Ana Maria Rocha; Yockteng, Roxana; Schnable, James; Alvarez-Buylla, Elena R; Freeling, Michael; Specht, Chelsea D

2014-08-29

The molecular genetic mechanisms underlying abaxial-adaxial polarity in plants have been studied as a property of lateral and flattened organs, such as leaves. In leaves, laminar expansion occurs as a result of balanced abaxial-adaxial gene expression. Over- or under- expression of either abaxializing or adaxializing genes inhibits laminar growth, resulting in a mutant radialized phenotype. Here, we show that co-option of the abaxial-adaxial polarity gene network plays a role in the evolution of stamen filament morphology in angiosperms. RNA-Seq data from species bearing laminar (flattened) or radial (cylindrical) filaments demonstrates that species with laminar filaments exhibit balanced expression of abaxial-adaxial (ab-ad) genes, while overexpression of a YABBY gene is found in species with radial filaments. This result suggests that unbalanced expression of ab-ad genes results in inhibition of laminar outgrowth, leading to a radially symmetric structure as found in many angiosperm filaments. We anticipate that co-option of the polarity gene network is a fundamental mechanism shaping many aspects of plant morphology during angiosperm evolution.

Fungal parasites infect marine diatoms in the upwelling ecosystem of the Humboldt current system off central Chile.

PubMed

Gutiérrez, Marcelo H; Jara, Ana M; Pantoja, Silvio

2016-05-01

This is the first report of fungal parasitism of diatoms in a highly productive coastal upwelling ecosystem, based on a year-round time series of diatom and parasitic Chytridiomycota abundance in the Humboldt Current System off Chile (36°30.80'S-73°07.70'W). Our results show co-variation in the presence of Skeletonema, Thalassiosira and Chaetoceros diatoms with attached and detached chytrid sporangia. High abundance of attached sporangia was observed during the austral spring, coinciding with a predominance of Thalassiosira and Skeletonema under active upwelling conditions. Towards the end of austral spring, a decreasing proportion of attached sporangia was accompanied by a decline in abundance of Skeletonema and Thalassiosira and the predominance of Chaetoceros, suggesting specificity and host density dependence of chytrid infection. The new findings on fungal parasitism of diatoms provide further support for the inclusion of Fungi in the current model of the role played by the marine microbial community in the coastal ocean. We propose a conceptual model where Fungi contribute to controlling the dynamics of phytoplankton populations, as well as the release of organic matter and the transfer of organic carbon through the pelagic trophic web in coastal upwelling ecosystems. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Effects of contrasting upwelling downwelling on benthic foraminiferal distribution in the Ría de Vigo (NW Spain)

NASA Astrophysics Data System (ADS)

Diz, Paula; Francés, Guillermo; Rosón, Gabriel

2006-04-01

Live benthic foraminifera in the superficial sediments from the muddy central axis of the Ría de Vigo were examined under two contrasting hydrographic conditions: downwelling and upwelling. During downwelling conditions the abundance of benthic foraminifera does not show large differences between sites with different organic carbon contents. The arrival of labile organic carbon to the seafloor delivered during upwelling events causes an increase in the abundance of the most significant species and the appearance of new species in the life assemblage. This suggests that benthic foraminiferal faunas strongly depend on high quality organic carbon supply and the sedimentary organic carbon is not a good indicator of food availability to benthic foraminifera. The response of benthic foraminifera to phytoplankton blooms differs between outer and inner sites. In outer and middle areas benthic foraminiferal assemblages show quick population growth in reaction to phytoplankton blooms (r-strategists), whereas in inner sites the most abundant species displays both growth and reproduction (k-strategists). It is suggested that r-strategy results of adaptation to perturbations on short time-scales (downwelling/upwelling cycles) under favourable microenvironmental conditions, while the k-strategy represents the adaptation to long term perturbations, such as relatively low oxygen concentrations and/or reducing microenvironmental conditions in the sediment.

Future changes in coastal upwelling ecosystems with global warming: The case of the California Current System.

PubMed

Xiu, Peng; Chai, Fei; Curchitser, Enrique N; Castruccio, Frederic S

2018-02-12

Coastal upwelling ecosystems are among the most productive ecosystems in the world, meaning that their response to climate change is of critical importance. Our understanding of climate change impacts on marine ecosystems is largely limited to the open ocean, mainly because coastal upwelling is poorly reproduced by current earth system models. Here, a high-resolution model is used to examine the response of nutrients and plankton dynamics to future climate change in the California Current System (CCS). The results show increased upwelling intensity associated with stronger alongshore winds in the coastal region, and enhanced upper-ocean stratification in both the CCS and open ocean. Warming of the open ocean forces isotherms downwards, where they make contact with water masses with higher nutrient concentrations, thereby enhancing the nutrient flux to the deep source waters of the CCS. Increased winds and eddy activity further facilitate upward nutrient transport to the euphotic zone. However, the plankton community exhibits a complex and nonlinear response to increased nutrient input, as the food web dynamics tend to interact differently. This analysis highlights the difficulty in understanding how the marine ecosystem responds to a future warming climate, given to range of relevant processes operating at different scales.

The formation processes of phytoplankton growth and decline in mesoscale eddies in the western North Pacific Ocean

NASA Astrophysics Data System (ADS)

Chang, Yu-Lin; Miyazawa, Yasumasa; Oey, Lie-Yauw; Kodaira, Tsubasa; Huang, Shihming

2017-05-01

In this study, we investigate the processes of phytoplankton growth and decline in mesoscale eddies in the western North Pacific Ocean based on the in situ chlorophyll data obtained from 52 cruises conducted by the Japan Meteorological Agency together with idealized numerical simulations. Both the observation and model results suggest that chlorophyll/phytoplankton concentrations are higher in cold than in warm eddies in near-surface water (z > -70 m). In the idealized simulation, the isopycnal movements associated with upwelling/downwelling transport phytoplankton and nutrients to different vertical depths during eddy formation (stage A). Phytoplankton and nutrients in cold eddies is transported toward shallower waters while those in warm eddies move toward deeper waters. In the period after the eddy has formed (stage B), sunlight and initially upwelled nutrients together promote the growth of phytoplankton in cold eddies. Phytoplankton in warm eddies decays due to insufficient sunlight in deeper waters. In stage B, upwelling and downwelling coexist in both warm and cold eddies, contributing nearly equally to vertical displacement. The upwelling/downwelling-induced nitrate flux accounts for a small percentage (˜3%) of the total nitrate flux in stage B. The vertical velocity caused by propagating eddies, therefore, is not the primary factor causing differences in phytoplankton concentrations between stage-B warm and cold eddies.

Three-Dimensional Numerical Simulation on Passively Excited Flows by Distributed Local Hot Sources Settled at the D" Layer Below Hotspots and/or Large-Scale Cool Masses at Subduction Zones Within the Static Layered Mantle

NASA Astrophysics Data System (ADS)

Eguchi, T.; Matsubara, K.; Ishida, M.

2001-12-01

To unveil dynamic process associated with three-dimensional unsteady mantle convection, we carried out numerical simulation on passively exerted flows by simplified local hot sources just above the CMB and large-scale cool masses beneath smoothed subduction zones. During the study, we used our individual code developed with the finite difference method. The basic three equations are for the continuity, the motion with the Boussinesq (incompressible) approximation, and the (thermal) energy conservation. The viscosity of our model is sensitive to temperature. To get time integration with high precision, we used the Newton method. In detail, the size and thermal energy of the hot or cool sources are not uniform along the latitude, because we could not select uniform local volumes assigned for the sources within the finite difference grids throughout the mantle. Our results, thus, accompany some latitude dependence. First, we treated the case of the hotspots, neglecting the contribution of the subduction zones. The local hot sources below the currently active hotspots were settled as dynamic driving forces included in the initial condition. Before starting the calculation, we assumed that the mantle was statically layered with zero velocity component. The thermal anomalies inserted instantaneously in the initial condition do excite dynamically passive flows. The type of the initial hot sources was not 'plume' but 'thermal.' The simulation results represent that local upwelling flows which were directly excited over the initial heat sources reached the upper mantle by approximately 30 My during the calculation. Each of the direct upwellings above the hotspots has its own dynamic potential to exert concentric down- and up-welling flows, alternately, at large distances. Simultaneously, the direct upwellings interact mutually within the spherical mantle. As an interesting feature, we numerically observed secondary upwellings somewhere in a wide region covering east Eurasia to the Bering Sea where no hot sources were initially input. It seems that the detailed location of the secondary upwellings depends partly on the numerical parameters such as the radial profile of mantle viscosity especially at the D" layer, etc., because the secondary flows are provoked by dynamic interaction among the distributed direct upwellings just above the CMB. Our results suggest that if we assume not only non-zero time delays during the input of the local hot sources but also parameters related with the difference of their historical surface flux rates, the pattern of the passively excited flows will be different from that obtained with the simultaneously settled hot sources stated above. Second, we simultaneously incorporated simplified thermal anomaly models associated with both the distributed local hotspots and the global subduction zones, as dynamic origins in the initial condition for the static layered mantle. In this case, the simulation result represents that the pattern of secondary radial flows, being different from those in the earlier case, is sensitive to the relative strength between the positive dynamic buoyancy integrated over all of the local hot sources below the hotspots and the total negative buoyancy beneath the subduction zones.

UV/IR Filaments for High Resolution Novel Spectroscopic Interrogation of Plumes on Nuclear Materials

DTIC Science & Technology

2016-06-01

Understanding the physics and properties of high power filaments propagating in air, which include: (a) Femtosecond IR (mJ) filaments (b) Nanosecond UV (J...space and wavelength can resolve this controversy. The results have been published in Journal of Physics B, special issue on filamentation [19]. Only a...Raman scattering? 3. What is the impact of filamentation on the ratio of backward to forward Raman? 4. What is the physical origin/content of the

Filament winding technique, experiment and simulation analysis on tubular structure

NASA Astrophysics Data System (ADS)

Quanjin, Ma; Rejab, M. R. M.; Kaige, Jiang; Idris, M. S.; Harith, M. N.

2018-04-01

Filament winding process has emerged as one of the potential composite fabrication processes with lower costs. Filament wound products involve classic axisymmetric parts (pipes, rings, driveshafts, high-pressure vessels and storage tanks), non-axisymmetric parts (prismatic nonround sections and pipe fittings). Based on the 3-axis filament winding machine has been designed with the inexpensive control system, it is completely necessary to make a relative comparison between experiment and simulation on tubular structure. In this technical paper, the aim of this paper is to perform a dry winding experiment using the 3-axis filament winding machine and simulate winding process on the tubular structure using CADWIND software with 30°, 45°, 60° winding angle. The main result indicates that the 3-axis filament winding machine can produce tubular structure with high winding pattern performance with different winding angle. This developed 3-axis winding machine still has weakness compared to CAWIND software simulation results with high axes winding machine about winding pattern, turnaround impact, process error, thickness, friction impact etc. In conclusion, the 3-axis filament winding machine improvements and recommendations come up with its comparison results, which can intuitively understand its limitations and characteristics.

Analysis on the Upwelling of the Anoxic Water Mass in Inner Tokyo Bay

NASA Astrophysics Data System (ADS)

Kitahara, Kouichi; Wada, Akira; Kawanaga, Mitsuhito; Fukuoka, Ippei; Takano, Tairyu

In the period of strong density stratification from early summer through early fall, the supply of oxygen from the sea surface to the deeper water is cut off. At the same time, organic matter decomposes near the ocean bottom, so that the anoxic water mass forms. In inner Tokyo Bay, when a northeasterly wind(directed from the inner bay toward the mouth of the bay)blows, the anoxic water mass upwells(an “Aoshio” occurs). In some cases fishes and shellfish die along the coast. Based on the report of results of continuous observations of water temperature, salinity and dissolved oxygen content presented by Fukuoka et al, 2005, here we have used an improved fluid flow model to carry out 3-dimensional calculations of the water level, water temperature, salinity and flow distributions. The computational results have reproduced the observational results well. The calculations showed that upwelling of the anoxic water mass that forms during the stratified period is not only affected by the continuously blowing northeasterly wind, but also by a continuous southwesterly wind that blew several days previously. Surface water blown against the coast by this continuous southwesterly wind is pushed downward; the calculations reproduced the process by which the rising force of this previously downwelled surface water also affects the phenomenon of anoxia. Furthermore, we presented the results of time dependent analysis of quantities relevant to water quality, including dissolved oxygen, which is closely related to the Aoshio, using the flow and diffusion model and a primary ecological model during the stratified ocean period, the sinking period and the upwelling period. We have compared the computed results to the results of continuous observations of dissolved oxygen during occurrence of an Aoshio in 1992 at observation point D-2, and confirmed that this model is an appropriate one to describe this phenomenon.

Larval fish assemblages across an upwelling front: Indication for active and passive retention

NASA Astrophysics Data System (ADS)

Tiedemann, Maik; Brehmer, Patrice

2017-03-01

In upwelling areas, enrichment, concentration and retention are physical processes that have major consequences for larval fish survival. While these processes generally increase larval survival, strong upwelling can also increase mortality due to an offshore transport of larvae towards unfavorable habitats. In 2013 a survey was conducted along the Senegalese coast to investigate the upwelling effect with regard to larval fish assemblages and possible larval fish retention. According to water column characteristics two distinct habitats during an upwelling event were discriminated, i.e. the inshore upwelled water and the transition area over the deepest part of the Senegalese shelf. Along the two areas 42,162 fish larvae were collected representing 133 species within 40 families. Highest larval fish abundances were observed in the inshore area and decreasing abundances towards the transition, indicating that certain fish species make use of the retentive function of the inner shelf area as spawning grounds. Two larval fish assemblages overlap both habitats, which are sharply delimited by a strong upwelling front. One assemblage inhabited the inshore/upwelling area characterized by majorly neritic and pelagic species (Sparidae spp., Sardinella aurita), that seem to take the advantage of a passive retention on the shelf. The second assemblage consisted of a mix of pelagic and mesopelagic species (Engraulis encrasicolus, Carangidae spp. and Myctophidae spp.). Some species of the second assemblage, e.g. horse mackerels (Trachurus trachurus and Trachurus trecae), large finned-lantern fish (Hygophum macrochir) and foureyed sole (Microchirus ocellatus), revealed larval peak occurrences at intermediate and deep water layers, where the near-ground upwelling layer is able to transport larvae back to the shelf. This indicates active larval retention for species that are dominant in the transition area. Diel vertical migration patterns of S. aurita, E. encrasicolus and M. ocellatus revealed that a larval fish species may adapt its behavior to the local environment and do not necessarily follow a diurnal cycle. Field observations are essential to be integrated in larval drift models, since the vertical and horizontal larval distribution will have major consequences for survival. Comprehending larval survival mechanisms is necessary for the ultimate goal to understand and predict recruitment.

Fundamental mechanisms of tensile fracture in aluminum sheet undirectionally reinforced with boron filament

NASA Technical Reports Server (NTRS)

Herring, H. W.

1972-01-01

Results are presented from an experimental study of the tensile-fracture process in aluminum sheet unidirectionally reinforced with boron filament. The tensile strength of the material is severely limited by a noncumulative fracture mechanism which involves the initiation and sustenance of a chain reaction of filament fractures at a relatively low stress level. Matrix fracture follows in a completely ductile manner. The minimum filament stress for initiation of the fracture mechanism is shown to be approximately 1.17 GN/sq m (170 ksi), and appears to be independent of filament diameter, number of filament layers, and the strength of the filament-matrix bond. All the commonly observed features of tensile fracture surfaces are explained in terms of the observed noncumulative fracture mechanism.

Constitutive Models for the Force-Extension Behavior of Biological Filaments

NASA Astrophysics Data System (ADS)

Palmer, J. S.; Castro, C. E.; Arslan, M.; Boyce, M. C.

Biopolymer filaments form the molecular backbone of biological structures throughout the body. The biomechanical response of single filaments yields insight into their individual behavior at the molecular level as well as their concerted networked behavior at the cellular and tissue scales. This paper focuses on modeling approaches for axial force vs. extension behavior of single biopolymer filaments within three stiffness regimes: flexible, semiflexible, and stiff. The end-to-end force-extension behaviors of flexible and semiflexible filaments arise as a result of a reduction in configurational space as the filament is straightened and are captured with entropic models including the freely jointed chain model and the worm-like chain model. As the filament is straightened and the end-to-end distance approaches the filament contour length, the contour length is directly axially extended and an internal energy contribution governs the force-extension behavior in this limiting extension regime. On the other hand, for stiff filaments in originally crimped or kinked configurations, the end-to-end force vs. extension behavior results from the unbending (straightening) of the crimped configuration as governed by an internal energy based elastica approximation which is also complemented by an axial stretching contribution once the end-to-end distance approaches the contour length of the filament. Simplified, analytical force-extension relationships are developed for the worm-like chain model for semiflexible filaments, and for the Euler elastica model for stiffer, wavy fibers. For the case of flexible molecules containing modular folded domains, the influence of force-induced unfolding on the force-extension behavior of single molecules and assemblies of multiple molecules is also presented.

Verification of reflectance models in turbid waters

NASA Technical Reports Server (NTRS)

Tanis, F. J.; Lyzenga, D. R.

1981-01-01

Inherent optical parameters of very turbid waters were used to evaluate existing water reflectance models. Measured upwelling radiance spectra and Monte Carlo simulations of the radiative transfer equations were compared with results from models based upon two flow, quasi-single scattering, augmented isotropic scattering, and power series approximation. Each model was evaluated for three separate components of upwelling radiance: (1) direct sunlight; (2) diffuse skylight; and (3) internally reflected light. Limitations of existing water reflectance models as applied to turbid waters and possible applications to the extraction of water constituent information are discussed.

Control of the collapse distance in atmospheric propagation

NASA Astrophysics Data System (ADS)

Fibich, Gadi; Sivan, Yonatan; Ehrlich, Yosi; Louzon, Einat; Fraenkel, Moshe; Eisenmann, Shmuel; Katzir, Yiftach; Zigler, Arie

2006-06-01

We show experimentally for ultrashort laser pulses propagating in air, that the collapse/filamentation distance of intense laser pulses in the atmosphere can be extended and controlled with a simple double-lens setup. We derive a simple formula for the filamentation distance, and confirm its agreement with the experimental results. We also observe that delaying the onset of filamentation increases the filament length.

Investigating the use of curcumin-loaded electrospun filaments for soft tissue repair applications

PubMed Central

Mouthuy, Pierre-Alexis; Somogyi Škoc, Maja; Čipak Gašparović, Ana; Milković, Lidija; Carr, Andrew J; Žarković, Neven

2017-01-01

Electrospun filaments represent a new generation of medical textiles with promising applications in soft tissue repair. A potential strategy to improve their design is to combine them with bioactive molecules. Curcumin, a natural compound found in turmeric, is particularly attractive for its antioxidant, anti-inflammatory, and antimicrobial properties. However, investigating the range of relevant doses of curcumin in materials designed for tissue regeneration has remained limited. In this paper, a wide range of curcumin concentrations was explored and the potential of the resulting materials for soft tissue repair applications was assessed. Polydioxanone (PDO) filaments were prepared with various amounts of curcumin: 0%, 0.001%, 0.01%, 0.1%, 1%, and 10% (weight to weight ratio). The results from the present study showed that, at low doses (≤0.1%), the addition of curcumin has no influence on the spinning process or on the physicochemical properties of the filaments, whereas higher doses lead to smaller fiber diameters and improved mechanical properties. Moreover, filaments with 0.001% and 0.01% curcumin stimulate the metabolic activity and proliferation of normal human dermal fibroblasts (NHDFs) compared with the no-filament control. However, this stimulation is not significant when compared to the control filaments (0%). Highly dosed filaments induce either the inhibition of proliferation (with 1%) or cell apoptosis (with 10%) as a result of the concentrations of curcumin found in the medium (9 and 32 μM, respectively), which are near or above the known toxicity threshold of curcumin (~10 μM). Moreover, filaments with 10% curcumin increase the catalase activity and glutathione content in NHDFs, indicating an increased production of reactive oxygen species resulting from the large concentration of curcumin. Overall, this study suggested that PDO electrospun filaments loaded with low amounts of curcumin are more promising compared with higher concentrations for stimulating tissue repair. This study also highlighted the need to explore lower concentrations when using polymers as PDO, such as those with polycaprolactone and other degradable polyesters. PMID:28579781

Initiation of Solar Eruptions

NASA Technical Reports Server (NTRS)

Sterling, Alphonse C.; Moore, Ronald L.

2007-01-01

We consider processes occurring just prior to and at the start of the onset of flare- and CME-producing solar eruptions. Our recent work uses observations of filament motions around the time of eruption onset as a proxy for the evolution of the fields involved in the eruption. Frequently the filaments show a slow rise prior to fast eruption, indicative of a slow expansion of the field that is about co explode. Work by us and others suggests that reconnection involving emerging or canceling flux results in a lengthening of fields restraining the filament-carrying field, and the consequent upward expansion of the field in and around the filament produces the filament's slow rise: that is, the reconnection weakens the magnetic "tethers" ("tether-weakening" reconnection), and results in the slow rise of the filament. It is still inconclusive, however, what mechanism is responsible for the switch from the slow rise to the fast eruption.

Critical current density measurement of striated multifilament-coated conductors using a scanning Hall probe microscope

NASA Astrophysics Data System (ADS)

Li, Xiao-Fen; Kochat, Mehdi; Majkic, Goran; Selvamanickam, Venkat

2016-08-01

In this paper the authors succeeded in measuring the critical current density ({J}{{c}}) of multifilament-coated conductors (CCs) with thin filaments as low as 0.25 mm using the scanning hall probe microscope (SHPM) technique. A new iterative method of data analysis is developed to make the calculation of {J}{{c}} for thin filaments possible, even without a very small scan distance. The authors also discussed in detail the advantage and limitation of the iterative method using both simulation and experiment results. The results of the new method correspond well with the traditional fast Fourier transform method where this is still applicable. However, the new method is applicable for the filamentized CCs in much wider measurement conditions such as with thin filament and a large scan distance, thus overcoming the barrier for application of the SHPM technique on {J}{{c}} measurement of long filamentized CCs with narrow filaments.

Mechanical behaviors of multi-filament twist superconducting strand under tensile and cyclic loading

NASA Astrophysics Data System (ADS)

Wang, Xu; Li, Yingxu; Gao, Yuanwen

2016-01-01

The superconducting strand, serving as the basic unit cell of the cable-in-conduit-conductors (CICCs), is a typical multi-filament twist composite which is always subjected to a cyclic loading under the operating condition. Meanwhile, the superconducting material Nb3Sn in the strand is sensitive to strain frequently relating to the performance degradation of the superconductivity. Therefore, a comprehensive study on the mechanical behavior of the strand helps understanding the superconducting performance of the strained Nb3Sn strands. To address this issue, taking the LMI (internal tin) strand as an example, a three-dimensional structural finite element model, named as the Multi-filament twist model, of the strand with the real configuration of the LMI strand is built to study the influences of the plasticity of the component materials, the twist of the filament bundle, the initial thermal residual stress and the breakage and its evolution of the filaments on the mechanical behaviors of the strand. The effective properties of superconducting filament bundle with random filament breakage and its evolution versus strain are obtained based on the damage theory of fiber-reinforced composite materials proposed by Curtin and Zhou. From the calculation results of this model, we find that the occurrence of the hysteresis loop in the cyclic loading curve is determined by the reverse yielding of the elastic-plastic materials in the strand. Both the initial thermal residual stress in the strand and the pitch length of the filaments have significant impacts on the axial and hysteretic behaviors of the strand. The damage of the filaments also affects the axial mechanical behavior of the strand remarkably at large axial strain. The critical current of the strand is calculated by the scaling law with the results of the Multi-filament twist model. The predicted results of the Multi-filament twist model show an acceptable agreement with the experiment.

Recent observations of the formation of filaments

NASA Technical Reports Server (NTRS)

Martin, Sara F.

1986-01-01

Two examples of the formation of small filaments in H alpha are described and illustrated. In both cases, the formation is seen to be the spontaneous appearance of strands of absorbing mass that evolve from no previous structure. The initial development of the filaments appears to consist of the accumulation of these absorptive strands along approximately parallel paths in a channel between large-scale, opposite polarity magnetic fields on either side of the filaments. The strands exhibit continuous changes in shape and degree of absorption which can be due to successive condensations resulting in new strands, mass motions within the strands, and outflow of the mass from the strands. For at least several hours before the formation of both filaments, small-scale fragments of opposite polarity, line-of-sight magnetic flux adjacent to or immediately below the filaments, and at the ends of the filaments, were cancelling. This type of magnetic flux disappearance continued during the development of the filaments and is commonly observed in association with established filaments. Cancellation is interpreted as an important evolutionary change in the magnetic field that can lead to configurations suitable for the formation of filaments.

Connections of intermediate filaments with the nuclear lamina and the cell periphery.

PubMed

Katsuma, Y; Swierenga, S H; Marceau, N; French, S W

1987-01-01

We investigated the relationship between intermediate filaments (IFs) and other detergent- and nuclease-resistant filamentous structures of cultured liver epithelial cells (T51B cell line) using whole mount unembedded preparations which were sequentially extracted with Triton X-100 and nucleases. Immunogold labelling and stereoscopic observation facilitated the examination of each filamentous structure and their three-dimensional relationships to each other. After solubilizing phospholipid, nucleic acid and soluble cellular protein, the resulting cytoskeleton preparation consisted of a network of cytokeratin and vimentin IFs linked by 3 nm filaments. The IFs were anchored to and determined the position of the nuclear lamina filaments (NLF) network and the centrioles. The NLF was composed of the nuclear lamina filaments measuring 3-6 nm in diameter which radiated from and anchored to the skeleton of the nuclear pores. The IFs located in the nuclear region appeared to be interwoven with the NLF. At the cell surface, the IFs seemed to be attached to the putative actin filament network. They formed a focally interrupted plexus-like structure at the cell periphery. Fragments of vimentin filaments were found among the filamentous network located at the cell surface, and some filaments terminated blindly there.

Cofilin Increases the Bending Flexibility of Actin Filaments: Implications for Severing and Cell Mechanics

PubMed Central

McCullough, Brannon R.; Blanchoin, Laurent; Martiel, Jean-Louis; De La Cruz, Enrique M.

2009-01-01

We determined the flexural (bending) rigidities of actin and cofilactin filaments from a cosine correlation function analysis of their thermally driven, two-dimensional fluctuations in shape. The persistence length of actin filaments is 9.8 µm, corresponding to a flexural rigidity of 0.040 pN µm2. Cofilin binding lowers the persistence length ∼5-fold to a value of 2.2 µm and the filament flexural rigidity to 0.0091 pN µm2. That cofilin-decorated filaments are more flexible than native filaments despite an increased mass indicates that cofilin binding weakens and redistributes stabilizing subunit interactions of filaments. We favor a mechanism in which the increased flexibility of cofilin-decorated filaments results from the linked dissociation of filament-stabilizing ions and reorganization of actin subdomain 2 and as a consequence promotes severing due to a mechanical asymmetry. Knowledge of the effects of cofilin on actin filament bending mechanics, together with our previous analysis of torsional stiffness, provide a quantitative measure of the mechanical changes in actin filaments associated with cofilin binding, and suggest that the overall mechanical and force-producing properties of cells can be modulated by cofilin activity. PMID:18617188

DNA damage induces nuclear actin filament assembly by Formin -2 and Spire-½ that promotes efficient DNA repair. [corrected].

PubMed

Belin, Brittany J; Lee, Terri; Mullins, R Dyche

2015-08-19

Actin filaments assemble inside the nucleus in response to multiple cellular perturbations, including heat shock, protein misfolding, integrin engagement, and serum stimulation. We find that DNA damage also generates nuclear actin filaments-detectable by phalloidin and live-cell actin probes-with three characteristic morphologies: (i) long, nucleoplasmic filaments; (ii) short, nucleolus-associated filaments; and (iii) dense, nucleoplasmic clusters. This DNA damage-induced nuclear actin assembly requires two biologically and physically linked nucleation factors: Formin-2 and Spire-1/Spire-2. Formin-2 accumulates in the nucleus after DNA damage, and depletion of either Formin-2 or actin's nuclear import factor, importin-9, increases the number of DNA double-strand breaks (DSBs), linking nuclear actin filaments to efficient DSB clearance. Nuclear actin filaments are also required for nuclear oxidation induced by acute genotoxic stress. Our results reveal a previously unknown role for nuclear actin filaments in DNA repair and identify the molecular mechanisms creating these nuclear filaments.

Tracking the Surface Circulation in Coastal Upwelling off Central and Northern California over Long Times and Large Areas.

NASA Astrophysics Data System (ADS)

Largier, J. L.; Garcia-Reyes, M.; Bjorkstedt, E.; Paduan, J. D.

2016-12-01

More than a decade of HF Radar data off central and northern California provides an unprecedented view of the flow structures and interannual variability in surface circulation in a coastal upwelling area. The interaction of the alongshore shelf jet with shoreline features and mesoscale eddies is well represented in direct analyses of HFR data and also important in improving the performance of data-assimilating models. While invaluable for operational response in the short-term, this long-term record of surface circulation is equally invaluable in ecosystem oceanography. With direct measurement of currents, the different expressions of upwelling can be disaggregated. Wind forcing, transport patterns and water properties can be evaluated independently and indexed independently. In doing this, it becomes clear that wind-current-temperature correlations change from place to place and year to year in any given region and that a single "upwelling index" is a blunt tool to track changes in pelagic and benthic communities in coastal upwelling areas.

Estimates of upwelling rates in the Arabian Sea and the equatorial Indian Ocean based on bomb radiocarbon.

PubMed

Bhushan, R; Dutta, K; Somayajulu, B L K

2008-10-01

Radiocarbon measurements were made in the water column of the Arabian Sea and the equatorial Indian Ocean during 1994, 1995 and 1997 to assess the temporal variations in bomb 14C distribution and its inventory in the region with respect to GEOSECS measurements made during 1977-1978. Four GEOSECS stations were reoccupied (three in the Arabian Sea and one in the equatorial Indian Ocean) during this study, with all of them showing increased penetration of bomb 14C along with decrease in its surface water activity. The upwelling rates derived by model simulation of bomb 14C depth profile using the calculated exchange rates ranged from 3 to 9 m a(-1). The western region of the Arabian Sea experiencing high wind-induced upwelling has higher estimated upwelling rates. However, lower upwelling rates obtained for the stations occupied during this study could be due to reduced 14C gradient compared to that during GEOSECS.

Climate change and ocean deoxygenation within intensified surface-driven upwelling circulations.

PubMed

Bakun, Andrew

2017-09-13

Ocean deoxygenation often takes place in proximity to zones of intense upwelling. Associated concerns about amplified ocean deoxygenation arise from an arguable likelihood that coastal upwelling systems in the world's oceans may further intensify as anthropogenic climate change proceeds. Comparative examples discussed include the uniquely intense seasonal Somali Current upwelling, the massive upwelling that occurs quasi-continuously off Namibia and the recently appearing and now annually recurring 'dead zone' off the US State of Oregon. The evident 'transience' in causal dynamics off Oregon is somewhat mirrored in an interannual-scale intermittence in eruptions of anaerobically formed noxious gases off Namibia. A mechanistic scheme draws the three examples towards a common context in which, in addition to the obvious but politically problematic remedy of actually reducing 'greenhouse' gas emissions, the potentially manageable abundance of strongly swimming, finely gill raker-meshed small pelagic fish emerges as a plausible regulating factor.This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'. © 2017 The Author(s).

Diatoms Si uptake capacity drives carbon export in coastal upwelling systems

NASA Astrophysics Data System (ADS)

Abrantes, Fatima; Cermeno, Pedro; Lopes, Cristina; Romero, Oscar; Matos, Lélia; Van Iperen, Jolanda; Rufino, Marta; Magalhães, Vitor

2016-07-01

Coastal upwelling systems account for approximately half of global ocean primary production and contribute disproportionately to biologically driven carbon sequestration. Diatoms, silica-precipitating microalgae, constitute the dominant phytoplankton in these productive regions, and their abundance and assemblage composition in the sedimentary record is considered one of the best proxies for primary production. The study of the sedimentary diatom abundance (SDA) and total organic carbon content (TOC) in the five most important coastal upwelling systems of the modern ocean (Iberia-Canary, Benguela, Peru-Humboldt, California, and Somalia-Oman) reveals a global-scale positive relationship between diatom production and organic carbon burial. The analysis of SDA in conjunction with environmental variables of coastal upwelling systems such as upwelling strength, satellite-derived net primary production, and surface water nutrient concentrations shows different relations between SDA and primary production on the regional scale. On the global scale, SDA appears modulated by the capacity of diatoms to take up silicic acid, which ultimately sets an upper limit to global export production in these ocean regions.

Intensification of upwelling along Oman coast in a warming scenario

NASA Astrophysics Data System (ADS)

Praveen, V.; Ajayamohan, R. S.; Valsala, V.; Sandeep, S.

2016-07-01

The oceanic impact of poleward shift in monsoon low-level jet (MLLJ) is examined using a Regional Ocean Modeling System (ROMS). Two sets of downscaling experiments were conducted using ROMS with boundary and initial conditions from six CMIP5 models. While outputs from the historical run (1981-2000) acts as forcing for the first, the second uses RCP8.5 (2080-2099). By comparing the outputs, it is found that Oman coast will experience an increase in upwelling in tune with MLLJ shift. Consistent with the changes in upwelling and zonal Ekman transport, temperature, salinity, and productivity show significant changes near the Oman coast. The changes in MLLJ causes the coastal wind to angle against the Oman coast in such a fashion that the net upwelling increases in the next century and so does the marine productivity. This study contrasts the general view of weakening of upwelling along the Arabian coasts due to the weakening of monsoon winds.

Upwelling changes along the Arabian coast in a warming scenario

NASA Astrophysics Data System (ADS)

Praveen, V.; Ravindran, A. M.; Valsala, V.; Sandeep, S.

2016-12-01

The oceanic impact of poleward shift in Monsoon Low-Level Jet (MLLJ) is examined using a regional ocean model (ROMS). Two sets of downscaling experiments were conducted using ROMS with boundary and initial conditions from six CMIP5 models. While outputs from the historical run (1981-2000) acts as forcing for the first, the second uses RCP8.5 (2080-2099). By comparing the outputs, it is found that Oman coast will experience an increase in upwelling in tune with MLLJ shift. Consistent with the changes in upwelling and zonal Ekman transport, temperature, salinity and productivity show significant changes near the Oman coast. The changes in MLLJ causes the coastal wind to angle against the Oman coast in such a fashion that the net upwelling increases in the next century and so does the marine productivity. This study contrasts the general view of weakening of upwelling along the Arabian coasts due to the weakening of monsoon winds. Above findings has major implications on the livelihood and economy of the region

High intake rates of microplastics in a Western Atlantic predatory fish, and insights of a direct fishery effect.

PubMed

Ferreira, Guilherme V B; Barletta, Mário; Lima, André R A; Morley, Simon A; Justino, Anne K S; Costa, Monica F

2018-05-01

Microplastic contamination was investigated in the gut contents of an economically important estuarine top predator, Cynoscion acoupa, according to spatiotemporal and ontogenetic use of a tropical estuary. Microplastic contamination was found in more than half of the analysed fish. Ingested microplastics were classified by type, colour and length with most of the particles consisting of filaments (<5 mm). Longer filaments were more frequently ingested in the upper estuary and smaller filaments in the lower estuary, as a result of differences in hydrodynamic forces and proximity to the probable input sources. The river is likely an important source of filaments to the estuary and filaments ingested in the upper estuary showed little sign of weathering, when compared with those from the lower estuary, which are subject to intense weathering and consequent break-up of particles to smaller sizes. Most filaments, of all colours, accumulated in adults of C. acoupa, which are more susceptible to contamination through both direct ingestion and trophic transference as they shift their feeding mode to piscivory. Moreover, the highest ingestion of filaments in adults occurred in the lower estuary, during the late rainy season, likely associated with the intense fishing activities in this habitat, which results in a greater input of filaments from fishing gear, which are mainly blue in colour. Overall, 44% of the ingested filaments were blue, 20% purple, 13% black, 10% red and 12% white. The next most common colour, the purple filaments, are most likely blue filaments whose colour has weathered to purple. Red filaments were proportionally more ingested in the lower estuary, indicating a coastal/oceanic source. White and black filaments were more commonly ingested in the inner estuary, suggesting that they have a riverine origin and/or were actively ingested by juveniles and sub-adults, which inhabit the inner estuary and have zooplankton as an important food resource. Copyright © 2018 Elsevier Ltd. All rights reserved.

Interannual variability in phytoplankton blooms observed in the northwestern Arabian Sea during the southwest monsoon

NASA Technical Reports Server (NTRS)

Brock, John C.; Mcclain, Charles R.

1992-01-01

Interannual changes in the strength and seasonal evolution of the 1979 through 1982 surface-level southwest monsoon winds are related to variations in the summer phytoplankton bloom of the northwestern Arabian Sea by synthesis of satellite ocean-color remote sensing with analysis of in-situ hydrographic and meteorological data sets. The 1979-1981 southwest monsoon phytoplankton blooms in the northwest Arabian Sea peaked during August-September, extended from the Omani coast to about 6 E, and appeared to lag the development of open-sea upwelling by at least 1 month. In all 3 years the bloom was driven by spatially distinct upward nutrient fluxes to the euphotic zone forced by the physical processes of coastal upwelling and offshore Ekman pumping. Coastal upwelling was evident from May through September, yielded the most extreme concentrations of phytoplankton biomass, and along the Omani coast was limited in its impact on upper ocean biological variability to the continental shelf. Ekman pumping stimulated the development of a broad open-ocean component of the southwest monsoon phytoplankton bloom oceanward of the Omani shelf. Phytoplankton biomass on the Omani continental shelf was increased during both the early and late phases of the 1980 southwest monsoon due to stronger coastal upwelling under the most intense southwesterly winds of the four summers investigated. Diminished coastal upwelling during the early phase of the weak 1982 southwest monsoon resulted in a coastal bloom that reached a mean phytoplankton-pigment concentration that was 28 percent of that seen in 1980. The lack of a strong regional northwestern Arabian Sea bloom in late summer 1982 is attributed to the development of persistent, shallow temperature stratification that rendered Ekman pumping less effective in driving upward nutrient fluxes.

The Arabian Sea as a high-nutrient, low-chlorophyll region during the late Southwest Monsoon

NASA Astrophysics Data System (ADS)

Naqvi, S. W. A.; Moffett, J. W.; Gauns, M. U.; Narvekar, P. V.; Pratihary, A. K.; Naik, H.; Shenoy, D. M.; Jayakumar, D. A.; Goepfert, T. J.; Patra, P. K.; Al-Azri, A.; Ahmed, S. I.

2010-07-01

Extensive observations were made during the late Southwest Monsoon of 2004 over the Indian and Omani shelves, and along a transect that extended from the southern coast of Oman to the central west coast of India, tracking the southern leg of the US JGOFS expedition (1994-1995) in the west. The data are used, in conjunction with satellite-derived data, to investigate long-term trends in chlorophyll and sea surface temperature, indicators of upwelling intensity, and to understand factors that control primary production (PP) in the Arabian Sea, focussing on the role of iron. Our results do not support an intensification of upwelling in the western Arabian Sea, reported to have been caused by the decline in the winter/spring Eurasian snow cover since 1997. We also noticed, for the first time, an unexpected development of high-nutrient, low-chlorophyll condition off the southern Omani coast. This feature, coupled with other characteristics of the system, such as a narrow shelf and relatively low iron concentrations in surface waters, suggest a close similarity between the Omani upwelling system and the Peruvian and California upwelling systems, where PP is limited by iron. Iron limitation of PP may complicate simple relationship between upwelling and PP assumed by previous workers, and contribute to the anomalous offshore occurrence of the most severe oxygen (O2) depletion in the region. Over the much wider Indian shelf, which experiences large-scale bottom water O2-depletion in summer, adequate iron supply from reducing bottom-waters and sediments seems to support moderately high PP; however, such production is restricted to the thin, oxygenated surface layer, probably because of the unsuitability of the O2-depleted environment for the growth of oxygenic photosynthesizers.

Annual trend patterns of phytoplankton species abundance belie homogeneous taxonomical group responses to climate in the NE Atlantic upwelling.

PubMed

Bode, Antonio; Estévez, M Graciela; Varela, Manuel; Vilar, José A

2015-09-01

Phytoplankton is a sentinel of marine ecosystem change. Composed by many species with different life-history strategies, it rapidly responds to environment changes. An analysis of the abundance of 54 phytoplankton species in Galicia (NW Spain) between 1989 and 2008 to determine the main components of temporal variability in relation to climate and upwelling showed that most of this variability was stochastic, as seasonality and long term trends contributed to relatively small fractions of the series. In general, trends appeared as non linear, and species clustered in 4 groups according to the trend pattern but there was no defined pattern for diatoms, dinoflagellates or other groups. While, in general, total abundance increased, no clear trend was found for 23 species, 14 species decreased, 4 species increased during the early 1990s, and only 13 species showed a general increase through the series. In contrast, series of local environmental conditions (temperature, stratification, nutrients) and climate-related variables (atmospheric pressure indices, upwelling winds) showed a high fraction of their variability in deterministic seasonality and trends. As a result, each species responded independently to environmental and climate variability, measured by generalized additive models. Most species showed a positive relationship with nutrient concentrations but only a few showed a direct relationship with stratification and upwelling. Climate variables had only measurable effects on some species but no common response emerged. Because its adaptation to frequent disturbances, phytoplankton communities in upwelling ecosystems appear less sensitive to changes in regional climate than other communities characterized by short and well defined productive periods. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Eruption histories and hypotheses of magma genesis of Mt. Baegdu volcano

NASA Astrophysics Data System (ADS)

Lim, C.; Lee, I.

2017-12-01

The tephra or cryptotephra are principally composed of alkaline glass shards, and INAA of individual grains offers a way of distinguishing chemical characteristics. That may be used to discriminate different events age and to correlate separate deposits of the same source volcanoes. The identification of tephra or cryptotephra layers presents an opportunity to define time-parallel marker horizons. With using INAA scanning method three newly identified tephras (named B-J, B-Sado and B-Ym) were detected and eruption ages identified between AT (29.24 cal. ka) and Aso-4 (88 ka) in five cores based on microscopic observation and the stratigraphic correlations between cores of the Holocene sediments in the southeastern East Sea/Japan Sea. By the correlation with TL (dark layer) data, the approximate age of B-J, B-Sado and B-Ym tephras were calculated as to be 50.6 ka, 67.6 ka, 86.8 ka, respectively. The intraplate Baegdusan (Changbai) volcanoes located on the border of China and North Korea have been explained by either hotspots by mantle plumes or asthenospheric mantle upwelling (wet plume) caused by stagnation slab of the subducted Pacific plate. To understand the origin of the Baegdusan volcanism, we performed geochemical analyses on the volcanic rocks and tephra deposits erupted from the Baegdusan volcanoes. We propose that the intraplate alkaline volcanism associated with Baekdusan volcanic region is fed by a mantle upwelling originating below the discontinuity subducting slab. The upwelling is a result of a slab neck into the subducting slabs. The Baekdusan volcano relies on a slab neck within subducting slab at depth to allow for a focused upwelling. Therefore, the magmatic progression of back-arc magmatism in Baekdusan volcanoes can be explained by the interaction of this Philippine Sea Plate Slab and upwelling mantle.

Alkaline phosphatase activity at the southwest coast of India: A comparison of locations differently affected by upwelling

NASA Astrophysics Data System (ADS)

Mamatha, S. S.; Malik, Ashish; Varik, Sandesh; Parvathi, V.; Jineesh, V. K.; Gauns, Mangesh U.; LokaBharathi, P. A.

2015-01-01

The realization of the potential importance of phosphorus (P) as a limiting nutrient in marine ecosystem is increasing globally. Hence, the contribution of biotic variables in mobilizing this nutrient would be relevant especially in productive coastal waters. As alkaline phosphatase activity (APA) indicates the status of P for primary production in aquatic environments, we asked the following question: is the level of APA indicative of P sufficiency or deficiency in coastal waters, especially, where upwelling is a regular phenomenon? Therefore, we have examined the total APA, chlorophyll a along with phosphatase producing bacteria (PPB) and related environmental parameters from nearshore to offshore in coastal waters off Trivandrum and Kochi regions differently affected by upwelling during the onset of monsoon. Off Trivandrum, APA in the offshore waters of 5-m layer at 2.23 μM P h- 1 was > 4 times higher than nearshore. Thus, low APA could be indicative of P sufficiency in coastal waters and higher activity suggestive of deficiency in offshore waters off Trivandrum. In contrast, there was less difference in APA between near and offshore surface waters off Kochi. Our results show that the regions differently affected by upwelling respond differently according to ambient P concentration, distance from shore or depth of water. These observations could apparently be applicable to other coastal systems as well, where gradients in upwelling and phosphate runoff have been noticed. Further studies on other transects would throw more light on the extent and direction of the relationship between APA and ambient P concentration. Such studies would help in understanding the level of control of this nutrient on the productivity of coastal waters.

Precession-paced thermocline water temperature changes in response to upwelling conditions off southern Sumatra over the past 300,000 years

NASA Astrophysics Data System (ADS)

Wang, Xingxing; Jian, Zhimin; Lückge, Andreas; Wang, Yue; Dang, Haowen; Mohtadi, Mahyar

2018-07-01

Modern variations of sea surface temperature (SST) and thermocline water temperature (TWT) off southern Sumatra are responding to local upwelling conditions which are controlled by the Australian-Indonesian winter monsoon. The relationships between SST, TWT and upwelling during the past glacial-interglacial cycles are less clearly understood. In this study, SST and TWT variabilities over the past 300 kyr are reconstructed by using foraminiferal Mg/Ca-paleothermometry in sediment core SO139-74 KL off southern Sumatra (6°32.6‧S, 103°50‧E; 1690 m water depth). Whereas SST shows a clear glacial-interglacial cycle, TWT displays a predominant cycle at the precession band. Generally, the TWT record varies with total organic carbon content, revealing that similar to today, TWT and upwelling intensity off southern Sumatra vary in concert during the past 300 kyr. The lack of glacial-interglacial variability in the TWT suggests a limited role of glacial boundary conditions, such as changing sea level and ice volume, on the upwelling intensity in this region. The vertical gradients of upper water δ18O and temperature at this site also reveal precessional cyclicity. Our model simulation of air-sea interaction further supports the low TWTs during periods of enhanced upwelling and precession minimum.

A coupled ice-ocean model of upwelling in the marginal ice zone

NASA Technical Reports Server (NTRS)

Roed, L. P.; Obrien, J. J.

1983-01-01

A dynamical coupled ice-ocean numerical model for the marginal ice zone (MIZ) is suggested and used to study upwelling dynamics in the MIZ. The nonlinear sea ice model has a variable ice concentration and includes internal ice stress. The model is forced by stresses on the air/ocean and air/ice surfaces. The main coupling between the ice and the ocean is in the form of an interfacial stress on the ice/ocean interface. The ocean model is a linear reduced gravity model. The wind stress exerted by the atmosphere on the ocean is proportional to the fraction of open water, while the interfacial stress ice/ocean is proportional to the concentration of ice. A new mechanism for ice edge upwelling is suggested based on a geostrophic equilibrium solution for the sea ice medium. The upwelling reported in previous models invoking a stationary ice cover is shown to be replaced by a weak downwelling due to the ice motion. Most of the upwelling dynamics can be understood by analysis of the divergence of the across ice edge upper ocean transport. On the basis of numerical model, an analytical model is suggested that reproduces most of the upwelling dynamics of the more complex numerical model.

Mutation-Specific Effects on Thin Filament Length in Thin Filament Myopathy

PubMed Central

de Winter, Josine M.; Joureau, Barbara; Lee, Eun-Jeong; Kiss, Balázs; Yuen, Michaela; Gupta, Vandana A.; Pappas, Christopher T.; Gregorio, Carol C.; Stienen, Ger J. M.; Edvardson, Simon; Wallgren-Pettersson, Carina; Lehtokari, Vilma-Lotta; Pelin, Katarina; Malfatti, Edoardo; Romero, Norma B.; van Engelen, Baziel G.; Voermans, Nicol C.; Donkervoort, Sandra; Bönnemann, C. G.; Clarke, Nigel F.; Beggs, Alan H.; Granzier, Henk; Ottenheijm, Coen A. C.

2016-01-01

Objective Thin filament myopathies are among the most common nondystrophic congenital muscular disorders, and are caused by mutations in genes encoding proteins that are associated with the skeletal muscle thin filament. Mechanisms underlying muscle weakness are poorly understood, but might involve the length of the thin filament, an important determinant of force generation. Methods We investigated the sarcomere length-dependence of force, a functional assay that provides insights into the contractile strength of muscle fibers as well as the length of the thin filaments, in muscle fibers from 51 patients with thin filament myopathy caused by mutations in NEB, ACTA1, TPM2, TPM3, TNNT1, KBTBD13, KLHL40, and KLHL41. Results Lower force generation was observed in muscle fibers from patients of all genotypes. In a subset of patients who harbor mutations in NEB and ACTA1, the lower force was associated with downward shifted force–sarcomere length relations, indicative of shorter thin filaments. Confocal microscopy confirmed shorter thin filaments in muscle fibers of these patients. A conditional Neb knockout mouse model, which recapitulates thin filament myopathy, revealed a compensatory mechanism; the lower force generation that was associated with shorter thin filaments was compensated for by increasing the number of sarcomeres in series. This allowed muscle fibers to operate at a shorter sarcomere length and maintain optimal thin–thick filament overlap. Interpretation These findings might provide a novel direction for the development of therapeutic strategies for thin filament myopathy patients with shortened thin filament lengths. PMID:27074222

Variability in bacterial community structure during upwelling in the coastal ocean

USGS Publications Warehouse

Kerkhof, L.J.; Voytek, M.A.; Sherrell, Robert M.; Millie, D.; Schofield, O.

1999-01-01

Over the last 30 years, investigations at the community level of marine bacteria and phytoplankton populations suggest they are tightly coupled. However, traditional oceanographic approaches cannot assess whether associations between specific bacteria and phytoplankton exist. Recently, molecular based approaches have been implemented to characterize specific members of different marine bacterial communities. Yet, few molecular-based studies have examined coastal upwelling situations. This is important since upwelling systems provide a unique opportunity for analyzing the association between specific bacteria and specific phytoplankton in the ocean. It is widely believed that upwelling can lead to changes in phytoplankton populations (blooms). Thus, if specific associations exist, we would expect to observe changes in the bacterial population triggered by the bloom. In this paper, we present preliminary data from coastal waters off New Jersey that confirm a shift in bacterial communities during a 1995 upwelling event recorded at a long-term earth observatory (LEO-15) in the Mid-Atlantic Bight. Using PCR amplification and cloning, specific bacterial 16S ribosomal RNA sequences were found which were present in upwelling samples during a phytoplankton bloom, but were not detected in non-bloom samples (surface seawater, offshore sites or sediment samples) collected at the same time or in the same area. These findings are consistent with the notion of specific associations between bacteria and phytoplankton in the ocean. However, further examination of episodic events, such as coastal upwelling, are needed to confirm the existence of specific associations. Additionally, experiments need to be performed to elucidate the mechanisms leading to the specific linkages between a group of bacteria and a group of phytoplankton.

Spatiotemporal variation of vertical particle fluxes and modelled chlorophyll a standing stocks in the Benguela Upwelling System

NASA Astrophysics Data System (ADS)

Vorrath, Maria-Elena; Lahajnar, Niko; Fischer, Gerhard; Libuku, Viktor Miti; Schmidt, Martin; Emeis, Kay-Christian

2018-04-01

Marine particle fluxes from high productive coastal upwelling systems return upwelled CO2 and nutrients to the deep ocean and sediments and have a substantial impact on the global carbon cycle. This study examines relations between production regimes on the shelf and over the continental margin of the Benguela Upwelling System (BUS) in the SE Atlantic Ocean. Data of composition and timing of vertical particle flux come from sediment trap time series (deployed intermittently between 1988 and 2014) in the regions Walvis Ridge, Walvis Bay, Luederitz and Orange River. We compare their seasonal variability to modelled patterns of chlorophyll concentrations in a 3-D ecosystem model. Both modelled seasonal chlorophyll a standing stocks and sampled particle flux patterns are highly correspondent with a bimodal seasonal cycle offshore the BUS. The material in the particle flux in offshore traps is dominantly carbonate (40-70%), and flux peaks in offshore particle flux originate from two independent events: in austral autumn thermocline shoaling and vertical mixing are decoupled from coastal upwelling, while fluxes in spring coincide with the upwelling season, indicated by slightly elevated biogenic opal values at some locations. Coastal particle fluxes are characterized by a trimodal pattern and are dominated by biogenic opal (22-35%) and organic matter (30-60%). The distinct seasonality in observed fluxes on the shelf is caused by high variability in production, sinking behaviour, wind stress, and hydrodynamic processes. We speculate that global warming will increase ocean stratification and alter coastal upwelling, so that consequences for primary production and particle flux in the BUS are inevitable.

Nutrient controls on new production in the Bodega Bay, California, coastal upwelling plume

NASA Astrophysics Data System (ADS)

Dugdale, R. C.; Wilkerson, F. P.; Hogue, V. E.; Marchi, A.

2006-12-01

A theoretical framework for the time-dependent processes leading to the high rates of new production in eastern boundary upwelling systems has been assembled from a series of past upwelling studies. As part of the CoOP WEST (Wind Events and Shelf Transport) study, new production in the Bodega Bay upwelling area and it's control by ambient nitrate and ammonium concentrations and the advective wind regime are described. Data and analyses are focused primarily on the WEST 2001 cruise (May-June 2001) when the two legs differed greatly in wind regimes but not nutrient concentrations. Elevated concentrations of ammonium in upwelled water with high nitrate were observed in both legs. Nitrate uptake by phytoplankton as a function of nitrate concentration was linear rather than Michaelis-Menten-like, modulated by inhibitory levels of ammonium, yielding coefficients that enable the specific nitrate uptake element of new production to be estimated from nutrient concentrations. The range of specific nitrate uptake rates for the two legs of WEST 2001 were similar, essentially a physiological response to nutrient conditions. However, the low "realization" of new production i.e. incorporation of biomass as particulate nitrogen that occurred in this system compared to the theoretical maximum possible was determined by the strong advective and turbulent conditions that dominated the second leg of the WEST 2001 study. These data are compared with other upwelling areas using a physiological shift-up model [Dugdale, R.C., Wilkerson, F.P., Morel, A. 1990. Realization of new production in coastal upwelling areas: a means to compare relative performance. Limnology and Oceanography 35, 822-829].

Detection and characterization of multi-filament evolution during resistive switching

DOE PAGES

Mickel, Patrick R.; Lohn, Andrew J.; Marinella, Matthew J.

2014-08-05

We present resistive switching data in TaO x memristors displaying signatures of multi-filament switching modes, and develop a geometrically defined equivalent circuit to separate the individual resistances and powers dissipated in each filament. Using these resolved values, we compare the individual switching curves of each filament and demonstrate that the switching data of each filament collapse onto a single switching curve determined by the analytical steady-state resistive switching solution for filamentary switching. Analyzing our results in terms of this solution, we determine the switching temperature, heat flow, conductivity, and time evolving areas of each filament during resistive switching. Finally, wemore » discuss operational modes which may limit the formation of additional conducting filaments, potentially leading to increased device endurance.« less

Modeling coastal upwelling around a small-scale coastline promontory

NASA Astrophysics Data System (ADS)

Haas, K. A.; Cai, D.; Freismuth, T. M.; MacMahan, J.; Di Lorenzo, E.; Suanda, S. H.; Kumar, N.; Miller, A. J.; Edwards, C. A.

2016-12-01

On the US west coast, northerly winds drive coastal ocean upwelling, an important process which brings cold nutrient rich water to the nearshore. The coastline geometry has been shown to be a significant factor in the strength of the upwelling process. In particular, the upwelling in the lee of major headlands have been shown to be enhanced. Recent observations from the Pt. Sal region on the coast of southern California have shown the presence of cooler water south of a small (350 m) rocky promontory (Mussel Pt.) during upwelling events. The hypothesis is that the small scale promontory is creating a lee side enhancement to the upwelling. To shed some light on this process, numerical simulations of the inner shelf region centered about Pt. Sal are conducted with the ROMS module of the COAWST model system. The model system is configured with four nested grids with resolutions ranging from approximately 600 m to the outer shelf ( 200 m) to the inner shelf ( 66 m) and finally to the surf zone ( 22 m). A solution from a 1 km grid encompassing our domain provides the boundary conditions for the 600 m grid. Barotropic tidal forcing is incorporated at the 600 m grid to provide tidal variability. This model system with realistic topography and bathymetry, winds and tides, is able to isolate the forcing mechanisms that explain the emergence of the cold water mass. The simulations focus on the time period of June - July, 2015 corresponding to the pilot study in which observational experiment data was collected. The experiment data in part consists of in situ measurement, which includes mooring with conductivity, temperature, depth, and flow velocity. The model simulations are able to reproduce the important flow features including the cooler water mass south of Mussel Pt. As hypothesized, the strength of the upwelling is enhanced on the side of Mussel Pt. In addition, periods of wind relaxation where the upwelling ceases and even begins to transform towards downwelling is analyzed.

Micro-phytoplankton community structure in the coastal upwelling zone off Concepción (central Chile): Annual and inter-annual fluctuations in a highly dynamic environment

NASA Astrophysics Data System (ADS)

Anabalón, V.; Morales, C. E.; González, H. E.; Menschel, E.; Schneider, W.; Hormazabal, S.; Valencia, L.; Escribano, R.

2016-12-01

An intensification of upwelling-favorable winds in recent decades has been detected in some of the main eastern boundary current systems, especially at higher latitudes, but the response of coastal phytoplankton communities in the Humboldt Current System (HCS) remains unknown. At higher latitudes in the HCS (35-40°S), strong seasonality in wind-driven upwelling during spring-summer coincides with an annual increase in coastal chlorophyll-a and primary production, and a dominance of micro-phytoplankton. In order to understand the effects of potential upwelling intensification on the micro-phytoplankton community in this region, annual and inter-annual variability in its structure (total and taxa-specific abundance and biomass) and its association with oceanographic fluctuations were analyzed using in situ time series data (2002-2009) from a shelf station off Concepcion (36.5°S). At the annual scale, total mean abundance and biomass, attributed to a few dominant diatom taxa, were at least one order of magnitude greater during spring-summer than autumn-winter, in association with changes in upwelling and surface salinity and temperature, whereas macro-nutrient concentrations remained relatively high all the year. At the inter-annual scale, total abundance and biomass decreased during the upwelling season of the 2006-2009 period compared with the 2002-2006 period, notably due to lower abundances of Skeletonema and Leptocylindrus, but the relative dominance of a few taxa was maintained. The 2006-2009 period was characterized by higher upwelling intensity, colder and higher salinity waters, and changes in nutrient concentrations and ratios compared with the first period. The inter-annual changes in the micro-phytoplankton community were mostly associated with changes in surface salinity and temperature (changes in upwelling intensity) but also with changes in Si/N and N/P, which relate to other land-derived processes.

Effects of Thermal Noise on the Transitional Dynamics of an Inextensible Elastic Filament in Stagnation Flow

PubMed Central

Deng, Mingge; Grinberg, Leopold; Caswell, Bruce

2015-01-01

We investigate the dynamics of a single inextensible elastic filament subject to anisotropic friction in a viscous stagnation-point flow, by employing both a continuum model represented by Langevin type stochastic partial differential equations (SPDEs) and a Dissipative Particle Dynamics (DPD) method. Unlike previous works1, the filament is free to rotate and the tension along the filament is determined by the local inextensible constraint. The kinematics of the filament is recorded and studied with normal modes analysis. The results show that the filament displays an instability induced by negative tension, which is analogous to Euler buckling of a beam. Symmetry breaking of normal modes dynamics and stretch-coil transitions are observed above the threshold of the buckling instability point. Furthermore, both temporal and spatial noise are amplified resulting from the interaction of thermal fluctuations and nonlinear filament dynamics. Specifically, the spatial noise is amplified with even normal modes being excited due to symmetry breaking, while the temporal noise is amplified with increasing time correlation length and variance. PMID:26023834

Synoptic-to-planetary scale wind variability enhances phytoplankton biomass at ocean fronts

NASA Astrophysics Data System (ADS)

Whitt, D. B.; Taylor, J. R.; Lévy, M.

2017-06-01

In nutrient-limited conditions, phytoplankton growth at fronts is enhanced by winds, which drive upward nutrient fluxes via enhanced turbulent mixing and upwelling. Hence, depth-integrated phytoplankton biomass can be 10 times greater at isolated fronts. Using theory and two-dimensional simulations with a coupled physical-biogeochemical ocean model, this paper builds conceptual understanding of the physical processes driving upward nutrient fluxes at fronts forced by unsteady winds with timescales of 4-16 days. The largest vertical nutrient fluxes occur when the surface mixing layer penetrates the nutricline, which fuels phytoplankton in the mixed layer. At a front, mixed layer deepening depends on the magnitude and direction of the wind stress, cross-front variations in buoyancy and velocity at the surface, and potential vorticity at the base of the mixed layer, which itself depends on past wind events. Consequently, mixing layers are deeper and more intermittent in time at fronts than outside fronts. Moreover, mixing can decouple in time from the wind stress, even without other sources of physical variability. Wind-driven upwelling also enhances depth-integrated phytoplankton biomass at fronts; when the mixed layer remains shallower than the nutricline, this results in enhanced subsurface phytoplankton. Oscillatory along-front winds induce both oscillatory and mean upwelling. The mean effect of oscillatory vertical motion is to transiently increase subsurface phytoplankton over days to weeks, whereas slower mean upwelling sustains this increase over weeks to months. Taken together, these results emphasize that wind-driven phytoplankton growth is both spatially and temporally intermittent and depends on a diverse combination of physical processes.

On the impact of the resolution on the surface and subsurface Eastern Tropical Atlantic warm bias

NASA Astrophysics Data System (ADS)

Martín-Rey, Marta; Lazar, Alban

2016-04-01

The tropical variability has a great importance for the climate of adjacent areas. Its sea surface temperature anomalies (SSTA) affect in particular the Brazilian Nordeste and the Sahelian region, as well as the tropical Pacific or the Euro-Atlantic sector. Nevertheless, the state-of the art climate models exhibits very large systematic errors in reproducing the seasonal cycle and inter-annual variability in the equatorial and coastal Africa upwelling zones (up to several °C for SST). Theses biases exist already, in smaller proportions though, in forced ocean models (several 1/10th of °C), and affect not only the mixed layer but also the whole thermocline. Here, we present an analysis of the impact of horizontal and vertical resolution changes on these biases. Three different DRAKKAR NEMO OGCM simulations have been analysed, associated to the same forcing set (DFS4.4) with different grid resolutions: "REF" for reference (1/4°, 46 vertical levels), "HH" with a finer horizontal grid (1/12°, 46 v.l.) and "HV" with a finer vertical grid (1/4°, 75 v.l.). At the surface, a more realistic seasonal SST cycle is produced in HH in the three upwellings, where the warm bias decreases (by 10% - 20%) during boreal spring and summer. A notable result is that increasing vertical resolution in HV causes a shift (in advance) of the upwelling SST seasonal cycles. In order to better understand these results, we estimate the three upwelling subsurface temperature errors, using various in-situ datasets, and provide thus a three-dimensional view of the biases.

Controls on the interannual variability of hypoxia in a subtropical embayment and its adjacent waters in the Guangdong coastal upwelling system, northern South China Sea

NASA Astrophysics Data System (ADS)

Zhang, Heng; Cheng, Weicong; Chen, Yuren; Yu, Liuqian; Gong, Wenping

2018-06-01

Coastal embayments located downwind of large rivers under an upwelling-favorable wind are prone to develop low-oxygen or hypoxic conditions in their bottom water. One such embayment is Mirs Bay, off the Guangdong coast, which is affected by upwelling and the Pearl River Estuary (PRE) plume during summer. The relative importance of physical and biochemical processes on the interannual variability of hypoxia in Mirs Bay and its adjacent waters was investigated using statistical analyses of monthly hydrographic and water quality monitoring data from 2001 to 2015. The results reveal that the southwesterly wind duration and the PRE river discharge together explain 49% of the interannual variability in the size of the hypoxic area, whereas inclusion of the nutrient concentrations inside Mirs Bay and phytoplankton on the shelf explains 75% of the interannual variability in the size of the hypoxic area. This finding suggests that the interannual variability of hypoxia in Mirs Bay is regulated by coupled physical and biochemical processes. Increase of the hypoxic area under a longer-lasting southwesterly wind is caused by increased stratification, extended bottom water residence time, and onshore transport of a low-oxygen water mass induced by stable upwelling. In contrast, a reduction in the size of the hypoxic area may be attributed to a decrease in the surface water residence time of the particulate organic matter outside Mirs Bay due to increased discharge from the PRE. The results also show that the effects of allochthonous particulate organic matter outside Mirs Bay on bottom hypoxia cannot be neglected.

Dynamics of plankton populations in upwelling areas. [by remote sensors

NASA Technical Reports Server (NTRS)

Szekielda, K.

1974-01-01

Recent investigations of the upwelling area along the NW Coast of Africa which include studies with satellites are discussed. The detection of patchiness in temperature and plankton distribution in the upwelling area is of special interest because they can be investigated from space synoptically with repeated coverage. The recent satellite missions provide recordings in the infrared region of the electromagnetic spectrum (EMR) as well as in the visible part. The information from those two parts of the EMR is useful for establishing the sea surface temperature and plankton distribution in upwelling areas. The temperature distribution as observed with infrared sensors and the patchiness in plankton patterns are discussed as observed with the most recent satellites, namely the Earth Resources Technology Satellite (ERTS) and NOAA-2.

Seasonal and annual variability of coastal sulphur plumes in the northern Benguela upwelling system.

PubMed

Ohde, Thomas; Dadou, Isabelle

2018-01-01

We investigated the seasonal and annual variability of surface sulphur plumes in the northern Benguela upwelling system off Namibia because of their significant impacts on the marine ecosystem, fishing industry, aquaculture farming and tourism due to their toxic properties. We identified the sulphur plumes in ocean colour satellite data of the medium resolution imaging spectrometer (MERIS) for the 2002-2012 time period using the differences in the spectral properties of Namibian Benguela optical water types. The sulphur events have a strong seasonal cycle with pronounced main and off-seasons forced by local and remote-driven processes. The main peak season is in late austral summer and early austral autumn at the beginning of the annual upwelling cycle caused by increasing equatorwards alongshore winds. The sulphur plume activity is high between February and April during the seasonal oxygen minimum associated with the seasonal reduction of cross-shore ventilation of the bottom waters, the seasonal southernmost position of the Angola Benguela Frontal Zone, the seasonal maximum of water mass fractions of South Atlantic and Angola Gyre Central Waters as well as the seasonal arrival of the downwelling coastal trapped waves. The off-season is in austral spring and early austral summer during increased upwelling intensity and enhanced oxygen supply. The annual variability of sulphur events is characterized by very high activities in years 2004, 2005 and 2010 interrupted by periods of lower activity in years 2002 to 2003, 2006 to 2009 and 2011 to 2012. This result can be explained by the relative contributions or adding effects of local and remote-driven forces (from the equatorial area). The probability for the occurrence of sulphur plumes is enhanced in years with a lower annual mean of upwelling intensity, decreased oxygen supply associated with decreased lateral ventilation of bottom waters, more southern position of the Angola Benguela Frontal Zone, increased mass fraction of South Atlantic Central Water and stronger downwelling coastal trapped waves. Understanding of the variability and forcing processes of the toxic sulphur events will help in the future to monitor and forecast them as well as to manage their social and economic consequences in the northern Benguela upwelling system off Namibia.

Climate variability and Dinophysis acuta blooms in an upwelling system.

PubMed

Díaz, Patricio A; Ruiz-Villarreal, Manuel; Pazos, Yolanda; Moita, Teresa; Reguera, Beatriz

2016-03-01

Dinophysis acuta is a frequent seasonal lipophilic toxin producer in European Atlantic coastal waters associated with thermal stratification. In the Galician Rías, populations of D. acuta with their epicentre located off Aveiro (northern Portugal), typically co-occur with and follow those of Dinophysis acuminata during the upwelling transition (early autumn) as a result of longshore transport. During hotter than average summers, D. acuta blooms also occur in August in the Rías, when they replace D. acuminata. Here we examined a 30-year (1985-2014) time series of D. acuta from samples collected by the same method in the Galician Rías. Our main objective was to identify patterns of distribution and their relation with climate variability, and to explain the exceptional summer blooms of D. acuta in 1989-1990. A dome-shaped relationship was found between summer upwelling intensity and D. acuta blooms; cell maxima were associated with conditions where the balance between upwelling intensity and heating, leading to deepened thermoclines, combined with tidal phase (3 days after neap tides) created windows of opportunity for this species. The application of a generalized additive model based on biological (D. acuta inoculum) and environmental predictors (Cumulative June-August upwelling CUI JJA , average June-August SST JJA and tidal range) explained more than 70% of the deviance for the exceptional summer blooms of D. acuta, through a combination of moderate (35,000-50,000m 3 s -1 km -1 ) summer upwelling (CUI JJA ), thermal stratification (SST JJA >17°C) and moderate tidal range (∼2.5m), provided D. acuta cells (inoculum) were present in July. There was no evidence of increasing trends in D. acuta bloom frequency/intensity nor a clear relationship with NAO or other long-term climatic cycles. Instead, the exceptional summer blooms of 1989-1990 appeared linked to extreme hydroclimatic anomalies (high positive anomalies in SST and NAO index), which affected most of the European Atlantic coast. Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Overlying extreme-ultraviolet arcades preventing eruption of a filament observed by AIA/SDO

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Huadong; Ma, Suli; Zhang, Jun, E-mail: hdchen@upc.edu.cn

2013-11-20

Using the multi-wavelength data from the Atmospheric Imaging Assembly/Solar Dynamic Observatory (AIA/SDO) and the Sun Earth Connection Coronal and Heliospheric Investigation/Solar Terrestrial Relations Observatory (SECCHI/STEREO), we report a failed filament eruption in NOAA AR 11339 on 2011 November 3. The eruption was associated with an X1.9 flare, but without any coronal mass ejection (CME), coronal dimming, or extreme ultraviolet (EUV) waves. Some magnetic arcades above the filament were observed distinctly in EUV channels, especially in the AIA 94 Å and 131 Å wavebands, before and during the filament eruption process. Our results show that the overlying arcades expanded along withmore » the ascent of the filament at first until they reached a projected height of about 49 Mm above the Sun's surface, where they stopped. The following filament material was observed to be confined by the stopped EUV arcades and not to escape from the Sun. After the flare, a new filament formed at the low corona where part of the former filament remained before its eruption. These results support that the overlying arcades play an important role in preventing the filament from successfully erupting outward. We also discuss in this paper the EUV emission of the overlying arcades during the flare. It is rare for a failed filament eruption to be associated with an X1.9 class flare, but not with a CME or EUV waves. Therefore, this study also provides valuable insight into the triggering mechanism of the initiation of CMEs and EUV waves.« less

Simultaneous transverse oscillations of a prominence and a filament and longitudinal oscillation of another filament induced by a single shock wave

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shen, Yuandeng; Liu, Ying D.; Chen, P. F.

2014-11-10

We present the first stereoscopic and Doppler observations of simultaneous transverse oscillations of a prominence and a filament and longitudinal oscillation of another filament launched by a single shock wave. Using Hα Doppler observations, we derive the three-dimensional oscillation velocities at different heights along the prominence axis. The results indicate that the prominence has a larger oscillation amplitude and damping time at higher altitude, but the periods at different heights are the same (i.e., 13.5 minutes). This suggests that the prominence oscillates like a linear vertical rigid body with one end anchored on the Sun. One of the filaments showsmore » weak transverse oscillation after the passing of the shock, which is possibly due to the low altitude of the filament and the weakening (due to reflection) of the shock wave before the interaction. Large-amplitude longitudinal oscillation is observed in the other filament after the passing of the shock wave. The velocity amplitude and period are about 26.8 km s{sup –1} and 80.3 minutes, respectively. We propose that the orientation of a filament or prominence relative to the normal vector of the incoming shock should be an important factor for launching transverse or longitudinal filament oscillations. In addition, the restoring forces of the transverse prominence are most likely due to the coupling of gravity and magnetic tension of the supporting magnetic field, while that for the longitudinal filament oscillation is probably the resultant force of gravity and magnetic pressure.« less

Laser-filamentation-induced water condensation and snow formation in a cloud chamber filled with different ambient gases.

PubMed

Liu, Yonghong; Sun, Haiyi; Liu, Jiansheng; Liang, Hong; Ju, Jingjing; Wang, Tiejun; Tian, Ye; Wang, Cheng; Liu, Yi; Chin, See Leang; Li, Ruxin

2016-04-04

We investigated femtosecond laser-filamentation-induced airflow, water condensation and snow formation in a cloud chamber filled respectively with air, argon and helium. The mass of snow induced by laser filaments was found being the maximum when the chamber was filled with argon, followed by air and being the minimum with helium. We also discussed the mechanisms of water condensation in different gases. The results show that filaments with higher laser absorption efficiency, which result in higher plasma density, are beneficial for triggering intense airflow and thus more water condensation and precipitation.

CONSIDERATION ON THE WEAKENING PHENOMENON OF FILAMENT USED FOR ELECTRIC LAMPS BY P-32 TRACER TECHNIQUE (in Japanese)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ozasa, M.; Ichikawa, S.; Kohara, R.

1963-01-01

The filament of high-wattage electric lamps using red phosphorus as getter has a tendency to down at the end parts. According to the metallurgical study, the phenomenon seems to be caused by phosphorus. Hence an attempt was made to trace the behavior of a smail amount of phosphorus on the filament with the aid of radioactive red phosphorus, P/sup 32/, in order to make clear the role of phosphorus in the weakening phenomenon by comparing the results with the metallurgical observation. Radioactive red phosphorus obtained as an irradiated unit was refined chemically, powdered, and spread on the filaments in themore » form of an alcoholic suspension. The test lamps using these filaments were raade and then running tests were carried out under several conditions. After running tests the filaments were taken out and the phosphorus remaining on the fllaments was determined by beta counting. The distribution of phosphorus on the filaments was observed by autoradiography. Before running tests, 247 plus or minus 57 mu g of phosphorus existed over a whole filament, although its distribution was not necessarily uniform. Most of the phosphorus vaporized from the filament during the running test. However, 0.05 to 0.5 mu g of phosphorus remained at the end parts of the filament even after 600 min of running time. The remaining phosphorus is due to the temperature of the end parts of the filament, which is about 1000 deg C lower than that of the central part (about 2500 deg C). In addition, it was confirmed by microautoradiography that phosphorus diffused into the filament at those parts. According to the metallurgical study, reductive non- metallic elements such as phosphorus affect the recrystallization of tungsten crystals by reducing the doping materials. From the microphotographic observation of those parts, it was found that the fiber structure changed completely to the block structure after running, which fact causes the filament to weaken. Further experimental results show that such a structure appears at a temperature higher than 1200 deg C when the filament contacts with phosphorus. It is thus presumed that the weakening phenomenon at the end parts of the filament will be caused by phosphorus remaining at those parts. Therefore, when phosphorus is spread only near the central part of the filament, where the temperature is high enough to vaporize phosphorus rapidly, phosphorus was not found anywhere on the filament after running, and the change of crystal structure was not recognized. (JAIF)« less

Observations of a diapycnal shortcut to adiabatic upwelling of Antarctic Circumpolar Deep Water

NASA Astrophysics Data System (ADS)

Silvester, J. Mead; Lenn, Yueng-Djern; Polton, Jeff A.; Rippeth, Tom P.; Maqueda, M. Morales

2014-11-01

In the Southern Ocean, small-scale turbulence causes diapycnal mixing which influences important water mass transformations, in turn impacting large-scale ocean transports such as the Meridional Overturning Circulation (MOC), a key controller of Earth's climate. We present direct observations of mixing over the Antarctic continental slope between water masses that are part of the Southern Ocean MOC. A 12 h time series of microstructure turbulence measurements, hydrography, and velocity observations off Elephant Island, north of the Antarctic Peninsula, reveals two concurrent bursts of elevated dissipation of O(10-6) W kg-1, resulting in heat fluxes ˜10 times higher than basin-integrated Drake Passage estimates. This occurs across the boundary between adjacent adiabatic upwelling and downwelling overturning cells. Ray tracing to nearby topography shows mixing between 300 and 400 m is consistent with the breaking of locally generated internal tidal waves. Since similar conditions extend to much of the Antarctic continental slope where these water masses outcrop, diapycnal mixing may contribute significantly to upwelling.

Upwelling rebound, ephemeral secondary pycnoclines, and the creation of a near-bottom wave guide over the Monterey Bay continental shelf

USGS Publications Warehouse

Cheriton, Olivia M.; McPhee-Shaw, Erika E.; Storlazzi, Curt D.; Rosenberger, Kurt J.; Shaw, William J.; Raanan, Ben Y.

2014-01-01

Several sequential upwelling events were observed in fall 2012, using measurements from the outer half of the continental shelf in Monterey Bay, during which the infiltration of dense water onto the shelf created a secondary, near-bottom pycnocline. This deep pycnocline existed in concert with the near-surface pycnocline and enabled the propagation of near-bottom, cold, semidiurnal internal tidal bores, as well as energetic, high-frequency, nonlinear internal waves of elevation (IWOE). The IWOE occurred within 20 m of the bottom, had amplitudes of 8–24 m, periods of 6–45 min, and depth-integrated energy fluxes up to 200 W m−1. Iribarren numbers (<0.03) indicate that these IWOE were nonbreaking in this region of the shelf. These observations further demonstrate how regional upwelling dynamics and the resulting bulk, cross-margin hydrography is a first-order control on the ability of internal waves, at tidal and higher frequencies, to propagate through continental shelf waters.

Thermally-Driven Mantle Plumes Reconcile Hot-spot Observations

NASA Astrophysics Data System (ADS)

Davies, D.; Davies, J.

2008-12-01

Hot-spots are anomalous regions of magmatism that cannot be directly associated with plate tectonic processes (e.g. Morgan, 1972). They are widely regarded as the surface expression of upwelling mantle plumes. Hot-spots exhibit variable life-spans, magmatic productivity and fixity (e.g. Ito and van Keken, 2007). This suggests that a wide-range of upwelling structures coexist within Earth's mantle, a view supported by geochemical and seismic evidence, but, thus far, not reproduced by numerical models. Here, results from a new, global, 3-D spherical, mantle convection model are presented, which better reconcile hot-spot observations, the key modification from previous models being increased convective vigor. Model upwellings show broad-ranging dynamics; some drift slowly, while others are more mobile, displaying variable life-spans, intensities and migration velocities. Such behavior is consistent with hot-spot observations, indicating that the mantle must be simulated at the correct vigor and in the appropriate geometry to reproduce Earth-like dynamics. Thermally-driven mantle plumes can explain the principal features of hot-spot volcanism on Earth.

Arctic ocean-shelf exchange: Measurements in Barrow Canyon

NASA Astrophysics Data System (ADS)

Aagaard, K.; Roach, A. T.

1990-10-01

Two closely instrumented arrays were deployed within Barrow Canyon during 1986-1987 in an attempt to measure the outflow of dense, hypersaline plumes created during sea ice formation along the Alaskan coast. However, no hypersaline plumes were observed. Rather, we found cold, relatively fresh waters advected downcanyon by the mean flow alternating with upcanyon flow of warm and saline water upwelled onto the shelf. Upwelling was most frequent in the fall, and upcanyon speeds reached 60 cm s-1. At times the resulting onshore heat and salt fluxes were large enough to be of possible local significance, for example, to the surface heat budget. Contrary to earlier findings, the flow was only weakly correlated with the wind and the atmospheric pressure gradient. Instead, we found both upwelling and flow reversals to be coherent along the coast at sites 400 km apart, with phase differences corresponding to a typical speed of 2.3 m s-1. We suggest that the majority of these events are manifestations of shelf waves propagating eastward along the Arctic Ocean margin.

Causality of an extreme harmful algal bloom in Monterey Bay, California, during the 2014-2016 northeast Pacific warm anomaly

NASA Astrophysics Data System (ADS)

Ryan, J. P.; Kudela, R. M.; Birch, J. M.; Blum, M.; Bowers, H. A.; Chavez, F. P.; Doucette, G. J.; Hayashi, K.; Marin, R.; Mikulski, C. M.; Pennington, J. T.; Scholin, C. A.; Smith, G. J.; Woods, A.; Zhang, Y.

2017-06-01

An ecologically and economically disruptive harmful algal bloom (HAB) affected much of the northeast Pacific margin in 2015, during a prolonged oceanic warm anomaly. Caused by diatoms of the genus Pseudo-nitzschia, this HAB produced the highest particulate concentrations of the biotoxin domoic acid (DA) ever recorded in Monterey Bay, California. Bloom inception followed strong upwelling during the spring transition, which introduced nutrients and eliminated the warm anomaly locally. Subsequently, moderate and intermittent upwelling created favorable conditions for growth and accumulation of HAB biomass, which was dominated by a highly toxigenic species, P. australis. High cellular DA concentrations were associated with available nitrogen for DA synthesis coincident with silicate exhaustion. This nutrient influence resulted from two factors: (1) disproportionate depletion of silicate in upwelling source waters during the warm anomaly, the most severe depletion observed in 24 years, and (2) silicate uptake by the dense diatom bloom.

Brook trout use of thermal refugia and foraging habitat influenced by brown trout

USGS Publications Warehouse

Hitt, Nathaniel P.; Snook, Erin; Massie, Danielle L.

2017-01-01

The distribution of native brook trout (Salvelinus fontinalis) in eastern North America is often limited by temperature and introduced brown trout (Salmo trutta), the relative importance of which is poorly understood but critical for conservation and restoration planning. We evaluated effects of brown trout on brook trout behavior and habitat use in experimental streams across increasing temperatures (14–23 °C) with simulated groundwater upwelling zones providing thermal refugia (6–9 °C below ambient temperatures). Allopatric and sympatric trout populations increased their use of upwelling zones as ambient temperatures increased, demonstrating the importance of groundwater as thermal refugia in warming streams. Allopatric brook trout showed greater movement rates and more even spatial distributions within streams than sympatric brook trout, suggesting interference competition by brown trout for access to forage habitats located outside thermal refugia. Our results indicate that removal of introduced brown trout may facilitate native brook trout expansion and population viability in downstream reaches depending in part on the spatial configuration of groundwater upwelling zones.

Observations and implications of large-amplitude longitudinal oscillations in a solar filament

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luna, M.; Knizhnik, K.; Muglach, K.

On 2010 August 20, an energetic disturbance triggered large-amplitude longitudinal oscillations in a nearby filament. The triggering mechanism appears to be episodic jets connecting the energetic event with the filament threads. In the present work, we analyze this periodic motion in a large fraction of the filament to characterize the underlying physics of the oscillation as well as the filament properties. The results support our previous theoretical conclusions that the restoring force of large-amplitude longitudinal oscillations is solar gravity, and the damping mechanism is the ongoing accumulation of mass onto the oscillating threads. Based on our previous work, we usedmore » the fitted parameters to determine the magnitude and radius of curvature of the dipped magnetic field along the filament, as well as the mass accretion rate onto the filament threads. These derived properties are nearly uniform along the filament, indicating a remarkable degree of cohesiveness throughout the filament channel. Moreover, the estimated mass accretion rate implies that the footpoint heating responsible for the thread formation, according to the thermal nonequilibrium model, agrees with previous coronal heating estimates. We estimate the magnitude of the energy released in the nearby event by studying the dynamic response of the filament threads, and discuss the implications of our study for filament structure and heating.« less

Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets

PubMed Central

Xiao, Xun; Geyer, Veikko F.; Bowne-Anderson, Hugo; Howard, Jonathon; Sbalzarini, Ivo F.

2016-01-01

Biological filaments, such as actin filaments, microtubules, and cilia, are often imaged using different light-microscopy techniques. Reconstructing the filament curve from the acquired images constitutes the filament segmentation problem. Since filaments have lower dimensionality than the image itself, there is an inherent trade-off between tracing the filament with sub-pixel accuracy and avoiding noise artifacts. Here, we present a globally optimal filament segmentation method based on B-spline vector level-sets and a generalized linear model for the pixel intensity statistics. We show that the resulting optimization problem is convex and can hence be solved with global optimality. We introduce a simple and efficient algorithm to compute such optimal filament segmentations, and provide an open-source implementation as an ImageJ/Fiji plugin. We further derive an information-theoretic lower bound on the filament segmentation error, quantifying how well an algorithm could possibly do given the information in the image. We show that our algorithm asymptotically reaches this bound in the spline coefficients. We validate our method in comprehensive benchmarks, compare with other methods, and show applications from fluorescence, phase-contrast, and dark-field microscopy. PMID:27104582

Magnetic structure of an activated filament in a flaring active region

NASA Astrophysics Data System (ADS)

Sasso, C.; Lagg, A.; Solanki, S. K.

2014-01-01

Aims: While the magnetic field in quiescent prominences has been widely investigated, less is known about the field in activated prominences. We report observational results on the magnetic field structure of an activated filament in a flaring active region. In particular, we studied its magnetic structure and line-of-sight flows during its early activated phase, shortly before it displayed signs of rotation. Methods: We inverted the Stokes profiles of the chromospheric He i 10 830 Å triplet and the photospheric Si i 10 827 Å line observed in this filament by the Vacuum Tower Telescope on Tenerife. Using these inversion results, we present and interpret the first maps of the velocity and magnetic field obtained in an activated filament, both in the photosphere and the chromosphere. Results: Up to five different magnetic components are found in the chromospheric layers of the filament, while outside the filament a single component is sufficient to reproduce the observations. Magnetic components displaying an upflow are preferentially located towards the centre of the filament, while the downflows are concentrated along its periphery. Moreover, the upflowing gas is associated with an opposite-polarity magnetic configuration with respect to the photosphere, while the downflowing gas is associated with a same-polarity configuration. Conclusions: The activated filament has a very complex structure. Nonetheless, it is compatible with a flux rope, albeit a distorted one, in the normal configuration. The observations are best explained by a rising flux rope in which part of the filament material is still stably stored (upflowing material, rising with the field), while the rest is no longer stably stored and flows down along the field lines. The movie is available in electronic form at http://www.aanda.org

NGVLA Observations of Dense Gas Filaments in Star-Forming Regions

NASA Astrophysics Data System (ADS)

Di Francesco, James; Chen, Mike; Keown, Jared; GAS Team, KEYSTONE Team

2018-01-01

Recent observations of continuum emission from nearby star-forming regions with Herschel and JCMT have revealed that filaments are ubiquitous structures within molecular clouds. Such filaments appear to be intimately connected to star formation, with those having column densities of AV > 8 hosting the majority of prestellar cores and young protostars in clouds. Indeed, this “threshold” can be explained simply as the result of supercritical cylinder fragmentation. How specifically star-forming filaments form in molecular clouds, however, remains unclear, though gravity and turbulence are likely involved. Observations of their kinematics are needed to understand how mass flows both onto and through these filaments. We show here results from two recent surveys, the Green Bank Ammonia Survey (GAS) and the K-band Examinations of Young Stellar Object Natal Environments (KEYSTONE) that have used the Green Bank Telescope’s K-band Focal Plane Array instrument to map NH3 (1,1) emission from dense gas in nearby star-forming regions. Data from both surveys show that NH3 emission traces extremely well the high column density gas across these star-forming regions. In particular, the GAS results for NGC 1333 show NH3-based velocity gradients either predominantly parallel or perpendicular to the filament spines. Though the GAS and KEYSTONE data are vital for probing filaments, higher resolutions than possible with the GBT alone are needed to examine the kinematic patterns on the 0.1-pc scales of star-forming cores within filaments. We describe how the Next Generation Very Large Array (NGVLA) will uniquely provide the key wide-field data of high sensitivity needed to explore how ambient gas in molecular clouds forms filaments that evolve toward star formation.

Differences between mono-generic and mixed diatom silicon isotope compositions trace present and past nutrient utilisation off Peru

NASA Astrophysics Data System (ADS)

Doering, Kristin; Ehlert, Claudia; Grasse, Patricia; Crosta, Xavier; Fleury, Sophie; Frank, Martin; Schneider, Ralph

2016-03-01

In this study we combine for the first time silicon (Si) isotope compositions of small mixed diatom species (δ30SibSiO2) and of large handpicked mono-generic (i.e. genus = Coscinodiscus) diatom samples (δ30SiCoscino) with diatom assemblages extracted from marine sediments in the Peruvian upwelling region in order to constrain present and past silicate utilisation. The extension of a previous core-top data set from the Peruvian shelf demonstrates that δ30SiCoscino values record near-complete Si utilisation, as these are similar to the isotopic composition of the subsurface source waters feeding the upwelling. In contrast, the δ30SibSiO2 of small mixed diatom species increase southward along the shelf as well as towards the shore. We attribute highest δ30SibSiO2 values partly to transient iron limitation but primarily to the gradual increase of Si isotope fractionation within the seasonal diatom succession, which are mainly recorded by small diatom species during intense bloom events. In contrast, lower δ30SibSiO2 values are related to initial Si isotope utilisation during periods of weak upwelling, when low Si(OH)4 concentrations do not permit intense blooms and small diatom species record substantially lower δ30Si signatures. As such, we propose that the intensity of the upwelling can be deduced from the offset between δ30SibSiO2 and δ30SiCoscino (Δ30Sicoscino-bSiO2), which is low for strong upwelling conditions and high for prevailing weak upwelling. We apply the information extracted from surface sediments to generate a record of the present-day main upwelling region covering the past 17,700 years and find that this location has also been characterized by a persistent offset (Δ30Sicoscino-bSiO2). By comparison with the diatom assemblages we show that the coastal upwelling system changed markedly between weak and strong upwelling conditions. In addition, our model calculations to quantify species-specific Si isotope fractionation effects based on the diatom assemblages indicate an overall minor influence that cannot explain the high amplitude in the measured δ30SibSiO2 record.

Scaling during capillary thinning of particle-laden drops

NASA Astrophysics Data System (ADS)

Thete, Sumeet; Wagoner, Brayden; Basaran, Osman

2017-11-01

A fundamental understanding of drop formation is crucial in many applications such as ink-jet printing, microfluidic devices, and atomization. During drop formation, the about-to-form drop is connected to the fluid hanging from the nozzle via a thinning filament. Therefore, the physics of capillary thinning of filaments is key to understanding drop formation and has been thoroughly studied for pure Newtonian fluids using theory, simulations, and experiments. In some of the applications however, the forming drop and hence the thinning filament may contain solid particles. The thinning dynamics of such particle-laden filaments differs radically from that of particle-free filaments. Moreover, our understanding of filament thinning in the former case is poor compared to that in the latter case despite the growing interest in pinch-off of particle-laden filaments. In this work, we go beyond similar studies and experimentally explore the impact of solid particles on filament thinning by measuring both the radial and axial scalings in the neck region. The results are summarized in terms of a phase diagram of capillary thinning of particle-laden filaments.

Pathway of actin filament branch formation by Arp2/3 complex revealed by single-molecule imaging

PubMed Central

Smith, Benjamin A.; Daugherty-Clarke, Karen; Goode, Bruce L.; Gelles, Jeff

2013-01-01

Actin filament nucleation by actin-related protein (Arp) 2/3 complex is a critical process in cell motility and endocytosis, yet key aspects of its mechanism are unknown due to a lack of real-time observations of Arp2/3 complex through the nucleation process. Triggered by the verprolin homology, central, and acidic (VCA) region of proteins in the Wiskott-Aldrich syndrome protein (WASp) family, Arp2/3 complex produces new (daughter) filaments as branches from the sides of preexisting (mother) filaments. We visualized individual fluorescently labeled Arp2/3 complexes dynamically interacting with and producing branches on growing actin filaments in vitro. Branch formation was strikingly inefficient, even in the presence of VCA: only ∼1% of filament-bound Arp2/3 complexes yielded a daughter filament. VCA acted at multiple steps, increasing both the association rate of Arp2/3 complexes with mother filament and the fraction of filament-bound complexes that nucleated a daughter. The results lead to a quantitative kinetic mechanism for branched actin assembly, revealing the steps that can be stimulated by additional cellular factors. PMID:23292935

Extending Femtosecond Filamentation of High Power Laser Propagating in the Atmosphere

NASA Astrophysics Data System (ADS)

Eisenmann, Shmuel; Sivan, Yonatan; Fibich, Gadi; Zigler, Arie

2008-06-01

We show experimentally for ultrashort laser pulses propagating in air, that the filamentation distance of intense laser pulses in the atmosphere can be extended and controlled with a simple double-lens setup. Using this method we were able to achieve a 20-fold delay of the filamentation distance of non-chirped 120 fs pulses propagating in air, from 16 m to 330 m. At 330 m, the collapsing pulse is sufficiently powerful to create plasma filaments. We also show that the scatter of the filaments at 330 m can be significantly reduced by tilting the second lens. We derive a simple formula for the filamentation distance, and confirm its agreement with the experimental results. We also observe that delaying the onset of filamentation increases the filament length. To the best of our knowledge, this is the longest distance reported in the literature at which plasma filaments were created and controlled. Finally, we show that the peak power at the onset of collapse is significantly higher with the double-lens setup, compared with the standard negative chirping approach.

Evaluation of Water Residence Time, Submarine Groundwater Discharge, and Maximum New Production Supported by Groundwater Borne Nutrients in a Coastal Upwelling Shelf System

NASA Astrophysics Data System (ADS)

Luo, Xin; Jiao, Jiu Jimmy; Liu, Yi; Zhang, Xiaolang; Liang, Wenzhao; Tang, Danling

2018-01-01

The biogeochemical processes in the continental shelf systems are usually extensively influenced by coastal upwelling and submarine groundwater discharge (SGD). Using eastern Hainan upwelling shelf system as an example, this study fully investigates SGD and coastal upwelling and their effects on the coastal nutrient loadings to the mixing layer of eastern Hainan shelf. Based on the spatial distributions of 223Ra and 228Ra, water residence time is estimated to be 16.9 ± 8.9 days. Based on the mass balance models of 226Ra and 228Ra, the total SGD of the eastern Hainan shelf is estimated to be 0.8 × 108 and 1.4 × 108 m3 d-1, respectively. The groundwater borne dissolved inorganic nitrogen (DIN) and dissolved inorganic phosphate (DIP) are estimated to be up to 1121.8 and 20.4 μM m2 d-1. The coastal upwelling delivers 2741.8 μM m2 d-1 DIN and 217.7 μM m2 d-1 DIP into the mixing layer, which are predominant in all the exogenous nutrient inputs. The groundwater borne DIN will support a maximum new production of 7.5 mM C m2 d-1, about up to 24.0% of the total new production in the study area. SGD-derived nutrient could be significant as a missing DIN to support the new production in the mixing layer of eastern Hainan shelf. The findings contribute to a better understanding of biogeochemical processes under the influences of SGD and coastal upwelling in the study area and other similar coastal upwelling systems.

Gradients in microbial methanol uptake: productive coastal upwelling waters to oligotrophic gyres in the Atlantic Ocean

PubMed Central

Dixon, Joanna L; Sargeant, Stephanie; Nightingale, Philip D; Colin Murrell, J

2013-01-01

Methanol biogeochemistry and its importance as a carbon source in seawater is relatively unexplored. We report the first microbial methanol carbon assimilation rates (k) in productive coastal upwelling waters of up to 0.117±0.002 d−1 (∼10 nmol l−1 d−1). On average, coastal upwelling waters were 11 times greater than open ocean northern temperate (NT) waters, eight times greater than gyre waters and four times greater than equatorial upwelling (EU) waters; suggesting that all upwelling waters upon reaching the surface (⩽20 m), contain a microbial population that uses a relatively high amount of carbon (0.3–10 nmol l−1 d−1), derived from methanol, to support their growth. In open ocean Atlantic regions, microbial uptake of methanol into biomass was significantly lower, ranging between 0.04–0.68 nmol l−1 d−1. Microbes in the Mauritanian coastal upwelling used up to 57% of the total methanol for assimilation of the carbon into cells, compared with an average of 12% in the EU, and 1% in NT and gyre waters. Several methylotrophic bacterial species were identified from open ocean Atlantic waters using PCR amplification of mxaF encoding methanol dehydrogenase, the key enzyme in bacterial methanol oxidation. These included Methylophaga sp., Burkholderiales sp., Methylococcaceae sp., Ancylobacter aquaticus, Paracoccus denitrificans, Methylophilus methylotrophus, Methylobacterium oryzae, Hyphomicrobium sp. and Methylosulfonomonas methylovora. Statistically significant correlations for upwelling waters between methanol uptake into cells and both chlorophyll a concentrations and methanol oxidation rates suggest that remotely sensed chlorophyll a images, in these productive areas, could be used to derive total methanol biological loss rates, a useful tool for atmospheric and marine climatically active gas modellers, and air–sea exchange scientists. PMID:23178665

Heat-induced formation of myosin oligomer-soluble filament complex in high-salt solution.

PubMed

Shimada, Masato; Takai, Eisuke; Ejima, Daisuke; Arakawa, Tsutomu; Shiraki, Kentaro

2015-02-01

Heat-induced aggregation of myosin into an elastic gel plays an important role in the water-holding capacity and texture of meat products. Here, we investigated thermal aggregation of porcine myosin in high-salt solution over a wide temperature range by dynamic light scattering experiments. The myosin samples were readily dissolved in 1.0 M NaCl at 25 °C followed by dilution into various salt concentrations. The diluted solutions consistently contained both myosin monomers and soluble filaments. The filament size decreased with increasing salt concentration and temperature. High temperatures above Tm led to at least partial dissociation of soluble filaments and thermal unfolding, resulting in the formation of soluble oligomers and binding to the persistently present soluble filaments. Such a complex formation between the oligomers and filaments has never been observed. Our results provide new insight into the heat-induced myosin gelation in high-salt solution. Copyright © 2014 Elsevier B.V. All rights reserved.

The Indonesian Throughflow: Oceanographic responses to Holocene changes in the mean Pacific state

NASA Astrophysics Data System (ADS)

Jacobel, A. W.; Oppo, D.; Eglinton, T. I.; Gibbons, F. T.; Montlucon, D.; Rosenthal, Y.; Linsley, B. K.

2009-12-01

The Indonesian Throughflow (ITF), which transfers upper ocean waters from the Pacific to the Indian Ocean, plays an essential role in global ocean circulation and tropical climate regulation. The flow and mixing regimes of the ITF are affected by changes in temperature, winds and upwelling caused by the Asian Monsoon/Intertropical Convergence Zone (AM/ITCZ) and interannual variations in El Niño (EN). Because the ITF is located in the Western Pacific Warm Pool, an area from which the atmosphere derives a large portion of its heat and water budget, changes in the ITF have the potential to perturb atmospheric circulation globally. Despite the importance of this region to global climate, changes in the ocean-atmosphere climate phenomenon affecting the ITF are still poorly understood. Our study used organic geochemical proxies for upwelling in the Makassar Strait to investigate Holocene oceanographic changes in the ITF in response to EN and the AM/ITCZ. A core-top biomarker survey was performed on multi-core samples from the Makassar Strait and surrounding areas. Concentrations of cholesterol (an indicator of integrated primary productivity) were determined by Gas Chromatography-Mass Spectrometry and were then compared with maps of regional July-August SST and determined to accurately reflect regional upwelling. Based on the findings of the core-top survey, a down-core biomarker record was generated from core BJ8-03-70 GGC taken from the West Sulawesi Margin in the Eastern Makassar Strait, an area that experiences seasonal upwelling associated with the boreal summer Asian monsoon. Cholesterol data show a trend towards increasing concentrations (upwelling or thermocline shoaling) in the late Holocene with a considerable increase approximately 6,000 years before present. Additionally, upwelling intensity appears to show more centennial-millennial variability during the late Holocene. Evidence that the summer monsoon has decreased in strength over the course of the Holocene (e.g. Wang et al., 2005) suggests that the increase in cholesterol is not a response to an increase in monsoon-driven upwelling. Because a shallower thermocline is associated with weak trade winds (El Niño-like conditions in the modern ocean), we interpret these results to represent a mid Holocene transition to a more El Niño-like mean Pacific state. This interpretation is consistent with previous evidence (Moy et al., 2002 and Conroy et al., 2008, yet the timing and reason for this transition is not well constrained. Further work should seek to develop a higher-resolution, multi-proxy dataset to explore and explain this change.

Coastal upwelling by wind-driven forcing in Jervis Bay, New South Wales: A numerical study for 2011

NASA Astrophysics Data System (ADS)

Sun, Youn-Jong; Jalón-Rojas, Isabel; Wang, Xiao Hua; Jiang, Donghui

2018-06-01

The Princeton Ocean Model (POM) was used to investigate an upwelling event in Jervis Bay, New South Wales (SE Australia), with varying wind directions and strengths. The POM was adopted with a downscaling approach for the regional ocean model one-way nested to a global ocean model. The upwelling event was detected from the observed wind data and satellite sea surface temperature images. The validated model reproduced the upwelling event showing the input of bottom cold water driven by wind to the bay, its subsequent deflection to the south, and its outcropping to the surface along the west and south coasts. Nevertheless, the behavior of the bottom water that intruded into the bay varied with different wind directions and strengths. Upwelling-favorable wind directions for flushing efficiency within the bay were ranked in the following order: N (0°; northerly) > NNE (30°; northeasterly) > NW (315°; northwesterly) > NE (45°; northeasterly) > ENE (60°; northeasterly). Increasing wind strengths also enhance cold water penetration and water exchange. It was determined that wind-driven downwelling within the bay, which occurred with NNE, NE and ENE winds, played a key role in blocking the intrusion of the cold water upwelled through the bay entrance. A northerly wind stress higher than 0.3 N m-2 was required for the cold water to reach the northern innermost bay.

COMPLEX FLARE DYNAMICS INITIATED BY A FILAMENT–FILAMENT INTERACTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, Chunming; McAteer, R. T. James; Liu, Rui

2015-11-01

We report on an eruption involving a relatively rare filament–filament interaction on 2013 June 21, observed by SDO and STEREO-B. The two filaments were separated in height with a “double-decker” configuration. The eruption of the lower filament began simultaneously with a descent of the upper filament, resulting in a convergence and direct interaction of the two filaments. The interaction was accompanied by the heating of surrounding plasma and an apparent crossing of a loop-like structure through the upper filament. The subsequent coalescence of the filaments drove a bright front ahead of the erupting structures. The whole process was associated withmore » a C3.0 flare followed immediately by an M2.9 flare. Shrinking loops and descending dark voids were observed during the M2.9 flare at different locations above a C-shaped flare arcade as part of the energy release, giving us unique insight into the flare dynamics.« less

Srs2 prevents Rad51 filament formation by repetitive motion on DNA.

PubMed

Qiu, Yupeng; Antony, Edwin; Doganay, Sultan; Koh, Hye Ran; Lohman, Timothy M; Myong, Sua

2013-01-01

Srs2 dismantles presynaptic Rad51 filaments and prevents its re-formation as an anti-recombinase. However, the molecular mechanism by which Srs2 accomplishes these tasks remains unclear. Here we report a single-molecule fluorescence study of the dynamics of Rad51 filament formation and its disruption by Srs2. Rad51 forms filaments on single-stranded DNA by sequential binding of primarily monomers and dimers in a 5'-3' direction. One Rad51 molecule binds to three nucleotides, and six monomers are required to achieve a stable nucleation cluster. Srs2 exhibits ATP-dependent repetitive motion on single-stranded DNA and this activity prevents re-formation of the Rad51 filament. The same activity of Srs2 cannot prevent RecA filament formation, indicating its specificity for Rad51. Srs2's DNA-unwinding activity is greatly suppressed when Rad51 filaments form on duplex DNA. Taken together, our results reveal an exquisite and highly specific mechanism by which Srs2 regulates the Rad51 filament formation.

Interaction of Two Filaments in a Long Filament Channel Associated with Twin Coronal Mass Ejections

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, Ruisheng; Chen, Yao; Wang, Bing

Using the high-quality observations of the Solar Dynamics Observatory , we present the interaction of two filaments (F1 and F2) in a long filament channel associated with twin coronal mass ejections (CMEs) on 2016 January 26. Before the eruption, a sequence of rapid cancellation and emergence of the magnetic flux has been observed, which likely triggered the ascending of the west filament (F1). The east footpoints of rising F1 moved toward the east far end of the filament channel, accompanied by post-eruption loops and flare ribbons. This likely indicated a large-scale eruption involving the long filament channel, which resulted frommore » the interaction between F1 and the east filament (F2). Some bright plasma flew over F2, and F2 stayed at rest during the eruption, likely due to the confinement of its overlying lower magnetic field. Interestingly, the impulsive F1 pushed its overlying magnetic arcades to form the first CME, and F1 finally evolved into the second CME after the collision with the nearby coronal hole. We suggest that the interaction of F1 and the overlying magnetic field of F2 led to the merging reconnection that forms a longer eruptive filament loop. Our results also provide a possible picture of the origin of twin CMEs and show that the large-scale magnetic topology of the coronal hole is important for the eventual propagation direction of CMEs.« less

Western boundary upwelling dynamics off Oman

NASA Astrophysics Data System (ADS)

Vic, Clément; Capet, Xavier; Roullet, Guillaume; Carton, Xavier

2017-05-01

Despite its climatic and ecosystemic significance, the coastal upwelling that takes place off Oman is not well understood. A primitive-equation, regional model forced by climatological wind stress is used to investigate its dynamics and to compare it with the better-known Eastern Boundary Upwellings (EBUs). The solution compares favorably with existing observations, simulating well the seasonal cycles of thermal structure, surface circulation (mean and turbulent), and sea-surface temperature (SST). There is a 1.5-month lag between the maximum of the upwelling-favorable wind-stress-curl forcing and the oceanic response (minima in sea-surface height and SST), which we attribute to onshore-propagating Rossby waves. A southwestward-flowing undercurrent (opposite to the direction of the near-surface flow) is also simulated with a core depth of 1000 m, much deeper than found in EBUs (150-200 m). An EKE budget reveals that, in contrast to EBUs, the upwelling jet is more prone to barotropic than baroclinic instability and the contribution of locally-generated instabilities to EKE is higher by an order of magnitude. Advection and redistribution of EKE by standing mesoscale features also play a significant role in EKE budget.

Galactic cold cores. VIII. Filament formation and evolution: Filament properties in context with evolutionary models

NASA Astrophysics Data System (ADS)

Rivera-Ingraham, A.; Ristorcelli, I.; Juvela, M.; Montillaud, J.; Men'shchikov, A.; Malinen, J.; Pelkonen, V.-M.; Marston, A.; Martin, P. G.; Pagani, L.; Paladini, R.; Paradis, D.; Ysard, N.; Ward-Thompson, D.; Bernard, J.-P.; Marshall, D. J.; Montier, L.; Tóth, L. V.

2017-05-01

Context. The onset of star formation is intimately linked with the presence of massive unstable filamentary structures. These filaments are therefore key for theoretical models that aim to reproduce the observed characteristics of the star formation process in the Galaxy. Aims: As part of the filament study carried out by the Herschel Galactic Cold Cores Key Programme, here we study and discuss the filament properties presented in GCC VII (Paper I) in context with theoretical models of filament formation and evolution. Methods: A conservatively selected sample of filaments located at a distance D< 500 pc was extracted from the GCC fields with the getfilaments algorithm. The physical structure of the filaments was quantified according to two main components: the central (Gaussian) region of the filament (core component), and the power-law-like region dominating the filament column density profile at larger radii (wing component). The properties and behaviour of these components relative to the total linear mass density of the filament and the column density of its environment were compared with the predictions from theoretical models describing the evolution of filaments under gravity-dominated conditions. Results: The feasibility of a transition from a subcritical to supercritical state by accretion at any given time is dependent on the combined effect of filament intrinsic properties and environmental conditions. Reasonably self-gravitating (high Mline,core) filaments in dense environments (AV≳ 3 mag) can become supercritical on timescales of t 1 Myr by accreting mass at constant or decreasing width. The trend of increasing Mline,tot (Mline,core and Mline,wing) and ridge AV with background for the filament population also indicates that the precursors of star-forming filaments evolve coevally with their environment. The simultaneous increase of environment and filament AV explains the observed association between dense environments and high Mline,core values, and it argues against filaments remaining in constant single-pressure equilibrium states. The simultaneous growth of filament and background in locations with efficient mass assembly, predicted in numerical models of filaments in collapsing clouds, presents a suitable scenario for the fulfillment of the combined filament mass-environment criterium that is in quantitative agreement with Herschel observations. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.

Beam wandering of femtosecond laser filament in air.

PubMed

Yang, Jing; Zeng, Tao; Lin, Lie; Liu, Weiwei

2015-10-05

The spatial wandering of a femtosecond laser filament caused by the filament heating effect in air has been studied. An empirical formula has also been derived from the classical Karman turbulence model, which determines quantitatively the displacement of the beam center as a function of the propagation distance and the effective turbulence structure constant. After fitting the experimental data with this formula, the effective turbulence structure constant has been estimated for a single filament generated in laboratory environment. With this result, one may be able to estimate quantitatively the displacement of a filament over long distance propagation and interpret the practical performance of the experiments assisted by femtosecond laser filamentation, such as remote air lasing, pulse compression, high order harmonic generation (HHG), etc.

Casein Kinase II Induced Polymerization of Soluble TDP-43 into Filaments Is Inhibited by Heat Shock Proteins

PubMed Central

Davis, Mary; Lin, Wen-Lang; Cook, Casey; Dunmore, Judy; Tay, William; Menkosky, Kyle; Cao, Xiangkun; Petrucelli, Leonard; DeTure, Michael

2014-01-01

Background Trans-activation Response DNA-binding Protein-43 (TDP-43) lesions are observed in Amyotrophic Lateral Sclerosis (ALS), Frontotemporal Lobar Degeneration with ubiquitin inclusions (FTLD-TDP) and 25–50% of Alzheimer's Disease (AD) cases. These abnormal protein inclusions are composed of either amorphous TDP-43 aggregates or highly ordered filaments. The filamentous TDP-43 accumulations typically contain clean 10–12 nm filaments though wider 18–20 nm coated filaments may be observed. The TDP-43 present within these lesions is phosphorylated, truncated and ubiquitinated, and these modifications appear to be abnormal as they are linked to both a cellular heat shock response and microglial activation. The mechanisms associated with this abnormal TDP-43 accumulation are believed to result in a loss of TDP-43 function, perhaps due to the post-translational modifications or resulting from physical sequestration of the TDP-43. The formation of TDP-43 inclusions involves cellular translocation and conversion of TDP-43 into fibrillogenic forms, but the ability of these accumulations to sequester normal TDP-43 and propagate this behavior between neurons pathologically is mostly inferred. The lack of methodology to produce soluble full length TDP-43 and recapitulate this polymerization into filaments as observed in disease has limited our understanding of these pathogenic cascades. Results The protocols described here generate soluble, full-length and untagged TDP-43 allowing for a direct assessment of the impact of various posttranslational modifications on TDP-43 function. We demonstrate that Casein Kinase II (CKII) promotes the polymerization of this soluble TDP-43 into 10 nm diameter filaments that resemble the most common TDP-43 structures observed in disease. Furthermore, these filaments are recognized as abnormal by Heat Shock Proteins (HSPs) which can inhibit TDP-43 polymerization or directly promote TDP-43 filament depolymerization. Conclusion These findings demonstrate CKII induces polymerization of soluble TDP-43 into filaments and Hsp90 promotes TDP-43 filament depolymerization. These findings provide rational for potential therapeutic intervention at these points in TDP-43 proteinopathies. PMID:24595055

The Stokesian hydrodynamics of flexing, stretching filaments

NASA Astrophysics Data System (ADS)

Shelley, Michael J.; Ueda, Tetsuji

2000-11-01

A central element of many fundamental problems in physics and biology lies in the interaction of a viscous fluid with slender, elastic filaments. Examples arise in the dynamics of biological fibers, the motility of microscopic organisms, and in phase transitions of liquid crystals. When considering the dynamics on the scale of a single filament, the surrounding fluid can often be assumed to be inertialess and hence governed by the Stokes’ equations. A typical simplification then is to assume a local relation, along the filament, between the force per unit length exerted by the filament upon the fluid and the velocity of the filament. While this assumption can be justified through slender-body theory as the leading-order effect, this approximation is only logarithmically separated (in aspect ratio) from the next-order contribution capturing the first effects of non-local interactions mediated by the surrounding fluid; non-local interactions become increasingly important as a filament comes within proximity to itself, or another filament. Motivated by a pattern forming system in isotropic to smectic-A phase transitions, we consider the non-local Stokesian dynamics of a growing elastica immersed in a fluid. The non-local interactions of the filament with itself are included using a modification of the slender-body theory of Keller and Rubinow. This modification is asymptotically equivalent, and removes an instability of their formulation at small, unphysical length-scales. Within this system, the filament lives on a marginal stability boundary, driven by a continual process of growth and buckling. Repeated bucklings result in filament flex, which, coupled to the non-local interactions and mediated by elastic response, leads to the development of space-filling patterns. We develop numerical methods to solve this system accurately and efficiently, even in the presence of temporal stiffness and the close self-approach of the filament. While we have ignored many of the thermodynamic aspects of this system, our simulations show good qualitative agreement with experimental observations. Our results also suggest that non-locality, induced by the surrounding fluid, will be important to understanding the dynamics of related filament systems.

Upwelling regime off the Cabo Frio region in Brazil and impact on acoustic propagation.

PubMed

Calado, Leandro; Camargo Rodríguez, Orlando; Codato, Gabriel; Contrera Xavier, Fabio

2018-03-01

This work introduces a description of the complex upwelling regime off the Cabo Frio region in Brazil and shows that ocean modeling, based on the feature-oriented regional modeling system (FORMS) technique, can produce reliable predictions of sound speed fields for the corresponding shallow water environment. This work also shows, through the development of simulations, that the upwelling regime can be responsible for the creation of shadow coastal zones, in which the detection probability is too low for an acoustic source to be detected. The development of the FORMS technique and its validation with real data, for the particular region of coastal upwelling off Cabo Frio, reveals the possibility of a sustainable and reliable forecast system for the corresponding (variable in space and time) underwater acoustic environment.

Two-dimensional periodic texture of actin filaments formed upon drying

PubMed Central

Honda, Hajime; Ishiwata, Shin’ichi

2011-01-01

We found that a solution of actin filaments can form a periodic texture in the process of drying on a flat glass surface in the air; the periodic texture was composed of smooth meandering bundles of actin filaments. We also found that a branched salt crystal grows in the space between the meandering bundles of actin filaments. The distance between the adjacent striae (striation period) in the resulting dried two-dimensional pattern of striation decreased from about 50 to 2 μm, as the ambient temperature was increased from 4 to 40°C at 1 mg/ml actin, and showed an increasing tendency from a few to several tens μm with the increase in the initial concentration of actin filaments from 0.6 to 2.0mg/ml at room temperature. As the speed of drying is increased at a certain temperature, the striation period was also found to decrease. We propose that the formation of the two-dimensional striation pattern of bundles of actin filaments is the result of condensation of proteins due to dehydration, and suggest that the solvent flow from the center to the periphery of the sample causes the meandering of actin filaments. PMID:27857588

Isotopic constraints on the genesis and evolution of basanitic lavas at Haleakala, Island of Maui, Hawaii

USGS Publications Warehouse

Phillips, Erin H.; Sims, K.W.W.; Sherrod, David R.; Salters, Vincent; Blusztajn, Jurek; Dulaiova, Henrieta

2016-01-01

To understand the dynamics of solid mantle upwelling and melting in the Hawaiian plume, we present new major and trace element data, Nd, Sr, Hf, and Pb isotopic compositions, and 238U–230Th–226Ra and 235U–231Pa–227Ac activities for 13 Haleakala Crater nepheline normative basanites with ages ranging from ∼900 to 4100 yr B.P. These basanites of the Hana Volcanics exhibit an enrichment in incompatible trace elements and a more depleted isotopic signature than similarly aged Hawaiian shield lavas from Kilauea and Mauna Loa. Here we posit that as the Pacific lithosphere beneath the active shield volcanoes moves away from the center of the Hawaiian plume, increased incorporation of an intrinsic depleted component with relatively low 206Pb/204Pb produces the source of the basanites of the Hana Volcanics. Haleakala Crater basanites have average (230Th/238U) of 1.23 (n = 13), average age-corrected (226Ra/230Th) of 1.25 (n = 13), and average (231Pa/235U) of 1.67 (n = 4), significantly higher than Kilauea and Mauna Loa tholeiites. U-series modeling shows that solid mantle upwelling velocity for Haleakala Crater basanites ranges from ∼0.7 to 1.0 cm/yr, compared to ∼10 to 20 cm/yr for tholeiites and ∼1 to 2 cm/yr for alkali basalts. These modeling results indicate that solid mantle upwelling rates and porosity of the melting zone are lower for Hana Volcanics basanites than for shield-stage tholeiites from Kilauea and Mauna Loa and alkali basalts from Hualalai. The melting rate, which is directly proportional to both the solid mantle upwelling rate and the degree of melting, is therefore greatest in the center of the Hawaiian plume and lower on its periphery. Our results indicate that solid mantle upwelling velocity is at least 10 times higher at the center of the plume than at its periphery under Haleakala.

Energy saving achieved by limited filamentous bulking sludge under low dissolved oxygen.

PubMed

Guo, Jian-Hua; Peng, Yong-Zhen; Peng, Cheng-Yao; Wang, Shu-Ying; Chen, Ying; Huang, Hui-Jun; Sun, Zhi-Rong

2010-02-01

Limited filamentous bulking caused by low dissolved oxygen (DO) was proposed to establish a low energy consumption wastewater treatment system. This method for energy saving was derived from two full-scale field observations, which showed pollutants removal would be enhanced and energy consumption could be reduced by at least 10% using limited filamentous bulking. Furthermore, preliminary investigation including the abundance evaluation and the identification of filamentous bacteria demonstrated that the limited filamentous bulking could be repeated steadily in a lab-scale anoxic-oxic reactor fed with domestic wastewater. The sludge loss did not occur in the secondary clarifier, while COD and total nitrogen removal efficiencies were improved by controlling DO for optimal filamentous bacterial population. Suspended solids in effluent were negligible and turbidity was lower than 2 NTU, which were distinctly lower than those under no bulking. Theoretical and experimental results indicated the aeration consumption could be saved by the application of limited filamentous bulking.

Sliding movement of single actin filaments on one-headed myosin filaments

NASA Astrophysics Data System (ADS)

Harada, Yoshie; Noguchi, Akira; Kishino, Akiyoshi; Yanagida, Toshio

1987-04-01

The myosin molecule consists of two heads, each of which contains an enzymatic active site and an actin-binding site. The fundamental problem of whether the two heads function independently or cooperatively during muscle contraction has been studied by methods using an actomyosin thread1, superprecipitation2-4 and chemical modification of muscle fibres5. No clear conclusion has yet been reached. We have approached this question using an assay system in which sliding movements of fluorescently labelled single actin filaments along myosin filaments can be observed directly6,7. Here, we report direct measurement of the sliding of single actin filaments along one-headed myosin filaments in which the density of heads was varied over a wide range. Our results show that cooperative interaction between the two heads of myosin is not essential for inducing the sliding movement of actin filaments.

Myosin light chain phosphorylation enhances contraction of heart muscle via structural changes in both thick and thin filaments

PubMed Central

Kampourakis, Thomas; Sun, Yin-Biao; Irving, Malcolm

2016-01-01

Contraction of heart muscle is triggered by calcium binding to the actin-containing thin filaments but modulated by structural changes in the myosin-containing thick filaments. We used phosphorylation of the myosin regulatory light chain (cRLC) by the cardiac isoform of its specific kinase to elucidate mechanisms of thick filament-mediated contractile regulation in demembranated trabeculae from the rat right ventricle. cRLC phosphorylation enhanced active force and its calcium sensitivity and altered thick filament structure as reported by bifunctional rhodamine probes on the cRLC: the myosin head domains became more perpendicular to the filament axis. The effects of cRLC phosphorylation on thick filament structure and its calcium sensitivity were mimicked by increasing sarcomere length or by deleting the N terminus of the cRLC. Changes in thick filament structure were highly cooperative with respect to either calcium concentration or extent of cRLC phosphorylation. Probes on unphosphorylated myosin heads reported similar structural changes when neighboring heads were phosphorylated, directly demonstrating signaling between myosin heads. Moreover probes on troponin showed that calcium sensitization by cRLC phosphorylation is mediated by the thin filament, revealing a signaling pathway between thick and thin filaments that is still present when active force is blocked by Blebbistatin. These results show that coordinated and cooperative structural changes in the thick and thin filaments are fundamental to the physiological regulation of contractility in the heart. This integrated dual-filament concept of contractile regulation may aid understanding of functional effects of mutations in the protein components of both filaments associated with heart disease. PMID:27162358

Myosin light chain phosphorylation enhances contraction of heart muscle via structural changes in both thick and thin filaments.

PubMed

Kampourakis, Thomas; Sun, Yin-Biao; Irving, Malcolm

2016-05-24

Contraction of heart muscle is triggered by calcium binding to the actin-containing thin filaments but modulated by structural changes in the myosin-containing thick filaments. We used phosphorylation of the myosin regulatory light chain (cRLC) by the cardiac isoform of its specific kinase to elucidate mechanisms of thick filament-mediated contractile regulation in demembranated trabeculae from the rat right ventricle. cRLC phosphorylation enhanced active force and its calcium sensitivity and altered thick filament structure as reported by bifunctional rhodamine probes on the cRLC: the myosin head domains became more perpendicular to the filament axis. The effects of cRLC phosphorylation on thick filament structure and its calcium sensitivity were mimicked by increasing sarcomere length or by deleting the N terminus of the cRLC. Changes in thick filament structure were highly cooperative with respect to either calcium concentration or extent of cRLC phosphorylation. Probes on unphosphorylated myosin heads reported similar structural changes when neighboring heads were phosphorylated, directly demonstrating signaling between myosin heads. Moreover probes on troponin showed that calcium sensitization by cRLC phosphorylation is mediated by the thin filament, revealing a signaling pathway between thick and thin filaments that is still present when active force is blocked by Blebbistatin. These results show that coordinated and cooperative structural changes in the thick and thin filaments are fundamental to the physiological regulation of contractility in the heart. This integrated dual-filament concept of contractile regulation may aid understanding of functional effects of mutations in the protein components of both filaments associated with heart disease.

INTERACTION OF TWO FILAMENT CHANNELS OF DIFFERENT CHIRALITIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joshi, Navin Chandra; Magara, Tetsuya; Moon, Yong-Jae

2016-07-10

We present observations of the interactions between the two filament channels of different chiralities and associated dynamics that occurred during 2014 April 18–20. While two flux ropes of different helicity with parallel axial magnetic fields can only undergo a bounce interaction when they are brought together, the observations at first glance show that the heated plasma is moving from one filament channel to the other. The SDO /AIA 171 Å observations and the potential-field source-surface magnetic field extrapolation reveal the presence of a fan-spine magnetic configuration over the filament channels with a null point located above them. Three different eventsmore » of filament activations, partial eruptions, and associated filament channel interactions have been observed. The activation initiated in one filament channel seems to propagate along the neighboring filament channel. We believe that the activation and partial eruption of the filaments brings the field lines of flux ropes containing them closer to the null point and triggers the magnetic reconnection between them and the fan-spine magnetic configuration. As a result, the hot plasma moves along the outer spine line toward the remote point. Utilizing the present observations, for the first time we have discussed how two different-chirality filament channels can interact and show interrelation.« less

Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets.

PubMed

Xiao, Xun; Geyer, Veikko F; Bowne-Anderson, Hugo; Howard, Jonathon; Sbalzarini, Ivo F

2016-08-01

Biological filaments, such as actin filaments, microtubules, and cilia, are often imaged using different light-microscopy techniques. Reconstructing the filament curve from the acquired images constitutes the filament segmentation problem. Since filaments have lower dimensionality than the image itself, there is an inherent trade-off between tracing the filament with sub-pixel accuracy and avoiding noise artifacts. Here, we present a globally optimal filament segmentation method based on B-spline vector level-sets and a generalized linear model for the pixel intensity statistics. We show that the resulting optimization problem is convex and can hence be solved with global optimality. We introduce a simple and efficient algorithm to compute such optimal filament segmentations, and provide an open-source implementation as an ImageJ/Fiji plugin. We further derive an information-theoretic lower bound on the filament segmentation error, quantifying how well an algorithm could possibly do given the information in the image. We show that our algorithm asymptotically reaches this bound in the spline coefficients. We validate our method in comprehensive benchmarks, compare with other methods, and show applications from fluorescence, phase-contrast, and dark-field microscopy. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Nearshore currents on the southern Namaqua shelf of the Benguela upwelling system

NASA Astrophysics Data System (ADS)

Fawcett, A. L.; Pitcher, G. C.; Shillington, F. A.

2008-05-01

Nearshore currents of the southern Namaqua shelf were investigated using data from a mooring situated three and a half kilometres offshore of Lambert's Bay, downstream of the Cape Columbine upwelling cell, on the west coast of South Africa. This area is susceptible to harmful algal blooms (HABs) and wind-forced variations in currents and water column structure are critical in determining the development, transport and dissipation of blooms. Time series of local wind data, and current and temperature profile data are described for three periods, considered to be representative of the latter part of the upwelling season (27 January-22 February), winter conditions (5-29 May) and the early part of the upwelling season (10 November-12 December) in 2005. Differences observed in mean wind strength and direction between data sets are indicative of seasonal changes in synoptic meteorological conditions. These quasi-seasonal variations in wind forcing affect nearshore current flow, leading to mean northward flow in surface waters early in the upwelling season when equatorward, upwelling-favourable winds are persistent. Mean near-surface currents are southward during the latter part of the upwelling season, consistent with more prolonged periods of relaxation from equatorward winds, and under winter conditions when winds were predominantly poleward. Within these seasonal variations in mean near-surface current direction, two scales of current variability were evident within all data sets: strong inertial oscillations were driven by diurnal winds and introduced vertical shear into the water column enhancing mixing across the thermocline, while sub-inertial current variability was driven by north-south wind reversals at periods of 2-5 days. Sub-inertial currents were found to lag wind reversals by approximately 12 h, with a tendency for near-surface currents to flow poleward in the absence of wind forcing. Consistent with similar sites along the Californian and Iberian coasts, the headland at Cape Columbine is considered to influence currents and circulation patterns during periods of relaxation from upwelling-favourable winds, favouring the development of a nearshore poleward current, leading to poleward advection of warm water, the development of stratification, and the creation of potentially favourable conditions for HAB development.

Across-shelf variability of phytoplankton composition, photosynthetic parameters and primary production in the NW Iberian upwelling system

NASA Astrophysics Data System (ADS)

Lorenzo, Luisa M.; Arbones, Belén; Tilstone, Gavin H.; Figueiras, Francisco G.

2005-02-01

Hydrographic conditions, phytoplankton composition and biomass, photosynthetic parameters and primary production were determined in the Ría de Vigo and adjacent shelf waters during April-May 1997 and September 1998. The sampling was designed to find the seasonal downwelling-upwelling and upwelling-downwelling transition periods characteristic of spring and autumn phytoplankton blooms. There was upwelling relaxation event followed by downwelling during both spring and autumn cruises. Temperature and salinity distributions showed that ría and shelf waters formed two distinct domains, which were separated by a thermohaline front at the mouth of the ría. The phytoplankton composition was completely different in the two environments. Cyanobacteria dominated on the shelf and constituted 46-66% of total phytoplankton biomass, while large phytoplankton (diatoms and dinoflagellates) were more abundant in the ría, especially during upwelling relaxation. However, the high shelf-ría exchange induced by a strong downwelling event on 7 September 1998 removed large phytoplankton (mainly diatoms) from the water column in the ría. Chlorophyll-specific maximum photosynthetic rates ( PmB) were significantly higher in the ría domain during upwelling relaxation, when autotrophic microplankton dominated in the interior. Primary production varied from 0.63 to 2.6 g C m -2 day -1 during the spring cruise and between 0.32 and 2.09 g C m -2 day -1 during the autumn cruise, with the highest values in the ría during both cruises. Primary production was relatively constant on the shelf with no significant differences between cruises, whereas differences were significant in the ría, with higher values during upwelling relaxation periods and lower values during downwelling. Analysis of light saturation parameters and light absorbed by phytoplanton in the water column suggests that photosynthesis was not light-limited either on the shelf or in the ría. It is concluded that upwelling-downwelling cycles were the main driving force, through changes in autotrophic microplankton biomass in the ría, that caused the variability observed in the ría-shelf system.

Simultaneous Quantification of Temperature, Pyroxenite Abundance, and Upwelling Rates in the Iceland Mantle Source

NASA Astrophysics Data System (ADS)

Brown, E.; Lesher, C. E.

2014-12-01

The compositions and volumes of basalts erupted at the earth's surface are a function of mantle temperature, mantle composition, and the rate at which the mantle upwells through the melting zone. Thus, basaltic magmatism has long been used to probe the thermal and physiochemical state of the earth's mantle. Great insight has been gained into the mantle beneath the global spreading ridge system, where the mantle source is assumed to be homogeneous peridotite that upwells passively [1]. However, it is now recognized that many basalt source regions are lithologically heterogeneous (i.e. containing recycled lithospheric material ranging from harzburgite to pyroxenite) and upwell at rates in excess of those governed by plate separation. To account for these complexities, we have developed a forward melting model for lithologically heterogeneous mantle that incorporates thermodynamically and experimentally constrained melting functions for a range of peridotite and pyroxenite lithologies. The model is unique because it quantifies mantle upwelling rates based on the net buoyancy of the source, thus providing a means for linking basalt compositions/volumes to mantle flow while accounting for source heterogeneity. We apply the model to investigate the mantle properties governing magmatism along different rift segments in Iceland, where lithologic heterogeneity and variable upwelling rates have been inferred through geochemical means [2,3]. Using constraints from seismically determined crustal thicknesses and recent estimates of the proportion of pyroxenite-derived melt contributing to Icelandic basalt compositions [4,5], we show that mantle sources beneath Iceland have excess potential temperatures >85 °C, contain <7% pyroxenite, and maximum upwelling rates ~14 times the passive rate. Our modeling highlights the dominant role of elevated mantle temperature and enhanced upwelling for high productivity magmatism in Iceland, and a subordinate role for mantle heterogeneity, which is required to account for much of the observed chemical and isotopic diversity. [1] Langmuir et al, 1992, AGU Geophys. Mono. Ser. 71 [2] Chauvel & Hemond, 2000, G-cubed, v 1 [3] Kokfelt et al, 2003, EPSL, v 214 [4] Sobolev et al, 2007, Science, v 316 [5] Shorttle et al, 2014, EPSL, v 395

Wind-driven upwelling effects on cephalopod paralarvae: Octopus vulgaris and Loliginidae off the Galician coast (NE Atlantic)

NASA Astrophysics Data System (ADS)

Otero, Jaime; Álvarez-Salgado, X. Antón; González, Ángel F.; Souto, Carlos; Gilcoto, Miguel; Guerra, Ángel

2016-02-01

Circulation patterns of coastal upwelling areas may have central consequences for the abundance and cross-shelf transport of the larval stages of many species. Previous studies have provided evidences that larvae distribution results from a combination of subtidal circulation, species-specific behaviour and larval sources. However, most of these works were conducted on organisms characterised by small-sized and abundant early life phases. Here, we studied the influence of the hydrography and circulation of the Ría de Vigo and adjacent shelf (NW Iberian upwelling system) on the paralarval abundance of two contrasting cephalopods, the benthic common octopus (Octopus vulgaris) and the pelagic squids (Loliginidae). We sampled repeatedly a cross-shore transect during the years 2003-2005 and used zero inflated models to accommodate the scarcity and patchy distribution of cephalopod paralarvae. The probability of catching early stages of both cephalopods was higher at night. Octopus paralarvae were more abundant in the surface layer at night whereas loliginids preferred the bottom layer regardless of the sampling time. Abundance of both cephalopods increased when shelf currents flowed polewards, water temperature was high and water column stability was low. The probability of observing an excess of zero catches decreased during the year for octopus and at high current speed for loliginids. In addition, the circulation pattern conditioned the body size distribution of both paralarvae; while the average size of the captured octopuses increased (decreased) with poleward currents at daylight (nighttime), squids were smaller with poleward currents regardless of the sampling time. These results contribute to the understanding of the effects that the hydrography and subtidal circulation of a coastal upwelling have on the fate of cephalopod early life stages.

Buffering and Amplifying Interactions among OAW (Ocean Acidification & Warming) and Nutrient Enrichment on Early Life-Stage Fucus vesiculosus L. (Phaeophyceae) and Their Carry Over Effects to Hypoxia Impact.

PubMed

Al-Janabi, Balsam; Kruse, Inken; Graiff, Angelika; Winde, Vera; Lenz, Mark; Wahl, Martin

2016-01-01

Ocean acidification and warming (OAW) are occurring globally. Additionally, at a more local scale the spreading of hypoxic conditions is promoted by eutrophication and warming. In the semi-enclosed brackish Baltic Sea, occasional upwelling in late summer and autumn may expose even shallow-water communities including the macroalga Fucus vesiculosus to particularly acidified, nutrient-rich and oxygen-poor water bodies. During summer 2014 (July-September) sibling groups of early life-stage F. vesiculosus were exposed to OAW in the presence and absence of enhanced nutrient levels and, subsequently to a single upwelling event in a near-natural scenario which included all environmental fluctuations in the Kiel Fjord, southwestern Baltic Sea, Germany (54°27 ´N, 10°11 ´W). We strove to elucidate the single and combined impacts of these potential stressors, and how stress sensitivity varies among genetically different sibling groups. Enhanced by a circumstantial natural heat wave, warming and acidification increased mortalities and reduced growth in F. vesiculosus germlings. This impact, however, was mitigated by enhanced nutrient conditions. Survival under OAW conditions strongly varied among sibling groups hinting at a substantial adaptive potential of the natural Fucus populations in the Western Baltic. A three-day experimental upwelling caused severe mortality of Fucus germlings, which was substantially more severe in those sibling groups which previously had been exposed to OAW. Our results show that global (OAW), regional (nutrient enrichment) and local pressures (upwelling), both alone and co-occurring may have synergistic and antagonistic effects on survival and/or growth of Fucus germlings. This result emphasizes the need to consider combined stress effects.

Radiolarian Indices of Paleoproductivity Variation in the late Pleistocene Benguela Upwelling System, ODP Site 1084

NASA Astrophysics Data System (ADS)

Bittniok, B. B.; Lazarus, D. B.; Diester-Haass, L.; Billups, K.; Meyers, P.

2006-12-01

Changes in export productivity play a significant role in ocean carbon budgets and global climate change. Proxies for export productivity can be difficult to interpret: benthic foraminifera accumulation rates (BFAR) can be affected by carbonate dissolution in organic-carbon rich sediments; bulk opal can be affected by silica limitation of source waters. Recent work (Lazarus et al. 2006; Mar. Micropal.) has shown that a new index based on radiolarian faunal changes (WADE ratio) correlates well to total organic carbon (TOC) values from the same samples over the long term (latest Miocene-Recent) history of productivity in the Benguela Upwelling System (BUS). We present new data on variation in export productivity proxies (WADE, TOC, carbonate, radiolarian opal, BFAR) for the last glacial-interglacial cycle from ODP Site 1084, located just offshore from the main coastal upwelling cells of the BUS. Our age model, from mean Quaternary sedimentation rates (Leg 175 Scientific Results), is in accordance with cyclic variation in other climate sensitive parameters (carbonate and color reflectance). Although opal content and radiolarian preservation is only moderate in our samples, WADE values vary significantly and suggest higher productivity during the last glacial, in accordance with current interpretations of BUS history. Radiolarian opal accumulation is also higher during the last glacial, suggesting that silica limitation (opal paradox) conditions did not dominate over this time period. Similar results for bulk opal have been reported from late Quaternary piston cores from the more northerly Congo upwelling region (Schneider et al, 1997; Paleoc.). We conclude that WADE ratios are a useful proxy for late Pleistocene productivity in the BUS at glacial- interglacial time scales.

Geodynamics of the East African Rift System ∼30 Ma ago: A stress field model

NASA Astrophysics Data System (ADS)

Min, Ge; Hou, Guiting

2018-06-01

The East African Rift System (EARS) is thought to be an intra-continental ridge that meets the Red Sea and the Gulf of Aden at the Ethiopian Afar as the failed arm of the Afar triple junction. The geodynamics of EARS is still unclear even though several models have been proposed. One model proposes that the EARS developed in a local tensile stress field derived from far-field loads because of the pushing of oceanic ridges. Alternatively, some scientists suggest that the formation of the EARS can be explained by upwelling mantle plumes beneath the lithospheric weak zone (e.g., the Pan-African suture zone). In our study, a shell model is established to consider the Earth's spherical curvature, the lithospheric heterogeneity of the African continent, and the coupling between the mantle plumes and the mid-ocean ridge. The results are calculated via the finite element method using ANSYS software and fit the geological evidence well. To discuss the effects of the different rock mechanical parameters and the boundary conditions, four comparative models are established with different parameters or boundary conditions. Model I ignores the heterogeneity of the African continent, Model II ignores mid-ocean spreading, Model III ignores the upwelling mantle plumes, and Model IV ignores both the heterogeneity of the African continent and the upwelling mantle plumes. Compared to these models is the original model that shows the best-fit results; this model indicates that the coupling of the upwelling mantle plumes and the mid-ocean ridge spreading causes the initial lithospheric breakup in Afar and East Africa. The extension direction and the separation of the EARS around the Tanzanian craton are attributed to the heterogeneity of the East African basement.

Seasonal variation of the South Indian tropical gyre

NASA Astrophysics Data System (ADS)

Aguiar-González, Borja; Ponsoni, Leandro; Ridderinkhof, Herman; van Aken, Hendrik M.; de Ruijter, Will P. M.; Maas, Leo R. M.

2016-04-01

Based on satellite altimeter data and global atlases of temperature, salinity, wind stress and wind-driven circulation we investigate the seasonal variation of the South Indian tropical gyre and its associated open-ocean upwelling system, known as the Seychelles-Chagos Thermocline Ridge (SCTR). Results show a year-round, altimeter-derived cyclonic gyre where the upwelling regime appears closely related to seasonality of the ocean gyre, a relationship that has not been previously explored in this region. An analysis of major forcing mechanisms suggests that the thermocline ridge results from the constructive interaction of basin-scale wind stress curl, local-scale wind stress forcing and remote forcing driven by Rossby waves of different periodicity: semiannual in the west, under the strong influence of monsoonal winds; and, annual in the east, where the southeasterlies prevail. One exception occurs during winter, when the well-known westward intensification of the upwelling core, the Seychelles Dome, is shown to be largely a response of the wind-driven circulation. At basin-scale, the most outstanding feature is the seasonal shrinkage of the ocean gyre and the SCTR. From late autumn to spring, the eastward South Equatorial Countercurrent (SECC) recirculates early in the east on feeding the westward South Equatorial Current, therefore closing the gyre before arrival to Sumatra. We find this recirculation longitude migrates over 20° and collocates with the westward advance of a zonal thermohaline front emerging from the encounter between (upwelled) Indian Equatorial Water and relatively warmer and fresher Indonesian Throughflow Water. We suggest this front, which we call the Indonesian Throughflow Front, plays an important role as remote forcing to the tropical gyre, generating southward geostrophic flows that contribute to the early recirculation of the SECC.

Oceanographic implications of the Cabo Catoche (Northeast Yucatan) upwelling and its effects on the coastal ecosystem

NASA Astrophysics Data System (ADS)

Reyes-Mendoza, O.; Marino-Tapia, I.; Herrera Silveira, J.; Cárdenas-Palómo, N.; Ruiz, G.

2013-05-01

The coasts of the world where upwelling events occur are intrinsically related to the human population, mainly because of their large fisheries, socioeconomic repercussion and implications concerning the health of the ecosystem. In the northeast of the Yucatan Peninsula occurs an upwelling event known as the Yucatan upwelling (YU) associated with the current of the same name. The mechanisms that generate the YU are still under discussion. In terms of seasonality it is agreed that this is annual, occurring between April and September. During spring and summer, the northeast coast of the Peninsula between CaboCatoche and Isla Contoy becomes a productive and diverse pelagic ecosystem, unique to the region. It is classified as a priority marine zone host to close to 59 species protected by the national laws. It is also recognized as an important priority marine site because of its fishery. Also, the largest global aggregation of whale sharks, the world's biggest fish, is found at this site. There is a strong connection between the physical and the biological components of the system, however the coastal extent, seasonality, and magnitude of these processes need to be determined. Therefore an in-situ study was designed in the coastal region of CaboCatoche, where a 50 km transect was positioned along shelf and another across shelf 20 km, where water was collected to determine nutrient concentrations and CTD profiles were casted during the summer of 2007, 2008 and 2011. Two acoustic profilers were installed 12 km from the coast, which recorded currents and temperature by 2 years. Another profiler located 17 km from the coast to recorded data by 8 years. Atmospheric pressure and temperature were measured, as a wind fields from NOAA. Maps were created for the vertical distribution of temperature (18-31°C), salinity (35-38 psu), density (22-27 kg/m3) and chlorophyll (0.05-12.7 mg/m3). Frequency periods were estimated for temperature, currents, wind and atmospheric pressure using spectral analysis and wavelets. In order to establish associations between the physical, chemical and biological variables multivariate analyses were performed. Based in temperature the results indicate that the upwelling occurs in pulses of two different time periods; 2-4 days and the other 8 to16 days, from March to September, associated with a decrease in sea level (-0.008±0.03 m) and variation in the V component of the current (0.007±0.006 m/s to the north). On the year the dominant tides are diurnal K1, O1 and semidiurnal M2, S2, and the U and V current component had the same periodicity during upwelling, but with not upwelling V hasn't it. The atmospheric temperature decreases the water column temperature near 10 degree during not upwelling, as also in upwelling but by other mechanisms. It is yet not possible to determine the mechanism responsible for this periodicity, however it is believed to be due to a combination of wind and Yucatan current variability. The Primary production has a response time of 2 to 3 days following the onset of the pulse and the Cla-a have an increase ten times more than the mean value.

Explicit demonstration of the role of Marangoni effect in the breakup of nanoscale liquid filaments

NASA Astrophysics Data System (ADS)

Seric, Ivana; Mahady, Kyle; Afkhami, Shahriar; Hartnett, Chris; Fowlkes, Jason; Rack, Philip; Kondic, Lou

2016-11-01

We consider a breakup of bi-metal filaments deposited on a solid substrate. These filaments are exposed to laser irradiation and, while in the liquid phase, evolve by a process resembling breakup of a liquid jet governed by the Rayleigh-Plateau instability. The novel element is that the Marangoni effect, resulting from a different surface tension of the two metals from which the filament is built, is crucial in understanding the instability development. In particular, Marangoni effect may lead to the inversion of the breakup process, producing droplets at the locations where according to the Rayleigh-Plateau theory dry spots would be expected. We present experimental results carried out with Cu-Ni filaments, as well as direct numerical simulations based on a novel algorithm that includes variable surface tension in a Volume-of-Fluid based Navier-Stokes solver. These results suggest the possibility of using Marangoni effect for the purpose of self- and directed-assembly on the nanoscale. Supported by the NSF Grant No. CBET-1604351.

Torsional Rigidity of Single Actin Filaments and Actin-Actin Bond Breaking Force under Torsion Measured Directly by in vitro Micromanipulation

NASA Astrophysics Data System (ADS)

Tsuda, Yuri; Yasutake, Hironori; Ishijima, Akihiko; Yanagida, Toshio

1996-11-01

Knowledge of the elastic properties of actin filaments is crucial for considering its role in muscle contraction, cellular motile events, and formation of cell shape. The stiffness of actin filaments in the directions of stretching and bending has been determined. In this study, we have directly determined the torsional rigidity and breaking force of single actin filaments by measuring the rotational Brownian motion and tensile strength using optical tweezers and microneedles, respectively. Rotational angular fluctuations of filaments supplied the torsional rigidity as (8.0 ± 1.2) × 10-26 Nm2. This value is similar to that deduced from the longitudinal rigidity, assuming the actin filament to be a homogeneous rod. The breaking force of the actin-actin bond was measured while twisting a filament through various angles using microneedles. The breaking force decreased greatly under twist, e.g., from 600-320 pN when filaments were turned through 90 degrees, independent of the rotational direction. Our results indicate that an actin filament exhibits comparable flexibility in the rotational and longitudinal directions, but breaks more easily under torsional load.

Filaments in Carbonaceous Meteorites: Mineral Crystals, Modern Bio-Contaminants or Indigenous Microfossils of Trichomic Prokaryotes?

NASA Technical Reports Server (NTRS)

Hoover, Richard B.; Borisyak, A. A.

2011-01-01

Environmental (ESEM) and Field Emission Scanning Electron Microscopy (FESEM) investigations have resulted in the detection of a large number of complex filaments in a variety of carbonaceous meteorites. Many of the filaments were observed to be clearly embedded the rock matrix of freshly fractured interior surfaces of the meteorites. The high resolution images obtained combined with tilt and rotation of the stage provide 3-dimensional morphological and morphometric data for the filaments. Calibrated Energy Dispersive X-ray Spectroscopy (EDS) and 2-D elemental X-ray maps have provided information on the chemical compositions of the filaments and the minerals of the associated meteorite rock matrix. These observations are used to evaluate diverse hypotheses regarding the possible abiotic or biogenic nature of the filaments found embedded in these meteorites.

C IV Doppler shifts observed in active region filaments

NASA Technical Reports Server (NTRS)

Klimchuk, J. A.

1986-01-01

The Doppler shift properties of 21 active region filaments were studied using C IV Dopplergram data. Most are associated with corridors of weak magnetic field that separate opposite polarity strong fields seen in photospheric magnetograms. A majority of the filaments are relatively blue shifted, although several lie very close to the dividing lines between blue and red shift. Only one filament in the samples is clearly red shifted. A new calibration procedure for Dopplergrams indicates that sizable zero point offsets are often required. The center-to-limb behavior of the resulting absolute Doppler shifts suggests that filament flows are usually quite small. It is possible that they vanish.

GALAXIES IN FILAMENTS HAVE MORE SATELLITES: THE INFLUENCE OF THE COSMIC WEB ON THE SATELLITE LUMINOSITY FUNCTION IN THE SDSS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guo, Quan; Libeskind, N. I.; Tempel, E., E-mail: qguo@aip.de

We investigate whether the satellite luminosity function (LF) of primary galaxies identified in the Sloan Digital Sky Survey (SDSS) depends on whether the host galaxy is in a filament or not. Isolated primary galaxies are identified in the SDSS spectroscopic sample, and potential satellites (that are up to four magnitudes fainter than their hosts) are searched for in the much deeper photometric sample. Filaments are constructed from the galaxy distribution by the Bisous process. Isolated primary galaxies are divided into two subsamples: those in filaments and those not in filaments. We examine the stacked mean satellite LF of both themore » filament and nonfilament samples and find that, on average, the satellite LF of galaxies in filaments is significantly higher than those of galaxies not in filaments. The filamentary environment can increase the abundance of the brightest satellites (M {sub sat.} < M {sub prim.} + 2.0) by a factor of ∼2 compared with nonfilament isolated galaxies. This result is independent of the primary galaxy magnitude, although the satellite LF of galaxies in the faintest magnitude bin is too noisy to determine if such a dependence exists. Because our filaments are extracted from a spectroscopic flux-limited sample, we consider the possibility that the difference in satellite LF is due to a redshift, color, or environmental bias, finding these to be insufficient to explain our result. The dependence of the satellite LF on the cosmic web suggests that the filamentary environment may have a strong effect on the efficiency of galaxy formation.« less

Drop pattern resulting from the breakup of a bidimensional grid of liquid filaments

NASA Astrophysics Data System (ADS)

Cuellar, Ingrith; Ravazzoli, Pablo D.; Diez, Javier A.; González, Alejandro G.

2017-10-01

A rectangular grid formed by liquid filaments on a partially wetting substrate evolves in a series of breakups leading to arrays of drops with different shapes distributed in a rather regular bidimensional pattern. Our study is focused on the configuration produced when two long parallel filaments of silicone oil, which are placed upon a glass substrate previously coated with a fluorinated solution, are crossed perpendicularly by another pair of long parallel filaments. A remarkable feature of this kind of grids is that there are two qualitatively different types of drops. While one set is formed at the crossing points, the rest are consequence of the breakup of shorter filaments formed between the crossings. Here, we analyze the main geometric features of all types of drops, such as shape of the footprint and contact angle distribution along the drop periphery. The formation of a series of short filaments with similar geometric and physical properties allows us to have simultaneously quasi identical experiments to study the subsequent breakups. We develop a simple hydrodynamic model to predict the number of drops that results from a filament of given initial length and width. This model is able to yield the length intervals corresponding to a small number of drops, and its predictions are successfully compared with the experimental data as well as with numerical simulations of the full Navier-Stokes equation that provide a detailed time evolution of the dewetting motion of the filament till the breakup into drops. Finally, the prediction for finite filaments is contrasted with the existing theories for infinite ones.

Galaxies in Filaments have More Satellites: The Influence of the Cosmic Web on the Satellite Luminosity Function in the SDSS

NASA Astrophysics Data System (ADS)

Guo, Quan; Tempel, E.; Libeskind, N. I.

2015-02-01

We investigate whether the satellite luminosity function (LF) of primary galaxies identified in the Sloan Digital Sky Survey (SDSS) depends on whether the host galaxy is in a filament or not. Isolated primary galaxies are identified in the SDSS spectroscopic sample, and potential satellites (that are up to four magnitudes fainter than their hosts) are searched for in the much deeper photometric sample. Filaments are constructed from the galaxy distribution by the Bisous process. Isolated primary galaxies are divided into two subsamples: those in filaments and those not in filaments. We examine the stacked mean satellite LF of both the filament and nonfilament samples and find that, on average, the satellite LF of galaxies in filaments is significantly higher than those of galaxies not in filaments. The filamentary environment can increase the abundance of the brightest satellites (M sat. < M prim. + 2.0) by a factor of ~2 compared with nonfilament isolated galaxies. This result is independent of the primary galaxy magnitude, although the satellite LF of galaxies in the faintest magnitude bin is too noisy to determine if such a dependence exists. Because our filaments are extracted from a spectroscopic flux-limited sample, we consider the possibility that the difference in satellite LF is due to a redshift, color, or environmental bias, finding these to be insufficient to explain our result. The dependence of the satellite LF on the cosmic web suggests that the filamentary environment may have a strong effect on the efficiency of galaxy formation.

Trigger of Successive Filament Eruptions Observed by SDO and STEREO

NASA Astrophysics Data System (ADS)

Dhara, Sajal Kumar; Belur, Ravindra; Kumar, Pankaj; Banyal, Ravinder Kumar; Mathew, Shibu K.; Joshi, Bhuwan

2017-10-01

Using multiwavelength observations from the Solar Dynamics Observatory (SDO) and the Solar Terrestrial Relations Observatory (STEREO), we investigate the mechanism of two successive eruptions (F1 and F2) of a filament in active region NOAA 11444 on 27 March 2012. The filament was inverse J-shaped and lay along a quasi-circular polarity inversion line (PIL). The first part of the filament erupted at ˜2{:}30 UT on 27 March 2012 (F1), the second part at around 4:20 UT on the same day (F2). A precursor or preflare brightening was observed below the filament main axis about 30 min before F1. The brightening was followed by a jet-like ejection below the filament, which triggered its eruption. Before the eruption of F2, the filament seemed to be trapped within the overlying arcade loops for almost 1.5 h before it successfully erupted. Interestingly, we observe simultaneously contraction (˜12 km s^{-1}) and expansion (˜20 km s^{-1}) of arcade loops in the active region before F2. Magnetograms obtained with the Helioseismic and Magnetic Imager (HMI) show converging motion of the opposite polarities, which result in flux cancellation near the PIL. We suggest that flux cancellation at the PIL resulted in a jet-like ejection below the filament main axis, which triggered F1, similar to the tether-cutting process. F2 was triggered by removal of the overlying arcade loops via reconnection. Both filament eruptions produced high-speed (˜1000 km s^{-1}) coronal mass ejections.

Omecamtiv mercabil and blebbistatin modulate cardiac contractility by perturbing the regulatory state of the myosin filament.

PubMed

Kampourakis, Thomas; Zhang, Xuemeng; Sun, Yin-Biao; Irving, Malcolm

2018-01-01

Omecamtiv mecarbil and blebbistatin perturb the regulatory state of the thick filament in heart muscle. Omecamtiv mecarbil increases contractility at low levels of activation by stabilizing the ON state of the thick filament. Omecamtiv mecarbil decreases contractility at high levels of activation by disrupting the acto-myosin ATPase cycle. Blebbistatin reduces contractility by stabilizing the thick filament OFF state and inhibiting acto-myosin ATPase. Thick filament regulation is a promising target for novel therapeutics in heart disease. Contraction of heart muscle is triggered by a transient rise in intracellular free calcium concentration linked to a change in the structure of the actin-containing thin filaments that allows the head or motor domains of myosin from the thick filaments to bind to them and induce filament sliding. It is becoming increasingly clear that cardiac contractility is also regulated through structural changes in the thick filaments, although the molecular mechanisms underlying thick filament regulation are still relatively poorly understood. Here we investigated those mechanisms using small molecules - omecamtiv mecarbil (OM) and blebbistatin (BS) - that bind specifically to myosin and respectively activate or inhibit contractility in demembranated cardiac muscle cells. We measured isometric force and ATP utilization at different calcium and small-molecule concentrations in parallel with in situ structural changes determined using fluorescent probes on the myosin regulatory light chain in the thick filaments and on troponin C in the thin filaments. The results show that BS inhibits contractility and actin-myosin ATPase by stabilizing the OFF state of the thick filament in which myosin head domains are more parallel to the filament axis. In contrast, OM stabilizes the ON state of the thick filament, but inhibits contractility at high intracellular calcium concentration by disrupting the actin-myosin ATPase pathway. The effects of BS and OM on the calcium sensitivity of isometric force and filament structural changes suggest that the co-operativity of calcium activation in physiological conditions is due to positive coupling between the regulatory states of the thin and thick filaments. © 2017 The Authors. The Journal of Physiology published by John Wiley & Sons Ltd on behalf of The Physiological Society.

Omecamtiv mercabil and blebbistatin modulate cardiac contractility by perturbing the regulatory state of the myosin filament

PubMed Central

Kampourakis, Thomas; Zhang, Xuemeng; Sun, Yin‐Biao

2017-01-01

Key points Omecamtiv mecarbil and blebbistatin perturb the regulatory state of the thick filament in heart muscle.Omecamtiv mecarbil increases contractility at low levels of activation by stabilizing the ON state of the thick filament.Omecamtiv mecarbil decreases contractility at high levels of activation by disrupting the acto‐myosin ATPase cycle.Blebbistatin reduces contractility by stabilizing the thick filament OFF state and inhibiting acto‐myosin ATPase.Thick filament regulation is a promising target for novel therapeutics in heart disease. Abstract Contraction of heart muscle is triggered by a transient rise in intracellular free calcium concentration linked to a change in the structure of the actin‐containing thin filaments that allows the head or motor domains of myosin from the thick filaments to bind to them and induce filament sliding. It is becoming increasingly clear that cardiac contractility is also regulated through structural changes in the thick filaments, although the molecular mechanisms underlying thick filament regulation are still relatively poorly understood. Here we investigated those mechanisms using small molecules – omecamtiv mecarbil (OM) and blebbistatin (BS) – that bind specifically to myosin and respectively activate or inhibit contractility in demembranated cardiac muscle cells. We measured isometric force and ATP utilization at different calcium and small‐molecule concentrations in parallel with in situ structural changes determined using fluorescent probes on the myosin regulatory light chain in the thick filaments and on troponin C in the thin filaments. The results show that BS inhibits contractility and actin‐myosin ATPase by stabilizing the OFF state of the thick filament in which myosin head domains are more parallel to the filament axis. In contrast, OM stabilizes the ON state of the thick filament, but inhibits contractility at high intracellular calcium concentration by disrupting the actin‐myosin ATPase pathway. The effects of BS and OM on the calcium sensitivity of isometric force and filament structural changes suggest that the co‐operativity of calcium activation in physiological conditions is due to positive coupling between the regulatory states of the thin and thick filaments. PMID:29052230

Modeling new production in upwelling centers - A case study of modeling new production from remotely sensed temperature and color

NASA Technical Reports Server (NTRS)

Dugdale, Richard C.; Wilkerson, Frances P.; Morel, Andre; Bricaud, Annick

1989-01-01

A method has been developed for estimating new production in upwelling systems from remotely sensed surface temperatures. A shift-up model predicts the rate of adaptation of nitrate uptake. The time base for the production cycle is obtained from a knowledge of surface heating rates and differences in temperature between the point of upwelling and each pixel. Nitrate concentrations are obtained from temperature-nitrate regression equations. The model was developed for the northwest Africa upwelling region, where shipboard measurements of new production were available. It can be employed in two modes, the first using only surface temperatures, and the second in which CZCS color data are incorporated. The major advance offered by this method is the capability to estimate new production on spatial and time scales inaccessible with shipboard approaches.

Fabrication of Polylactide Nanocomposite Filament Using Melt Extrusion and Filament Characterization for 3D Printing

NASA Astrophysics Data System (ADS)

Jain, Shrenik Kumar

Fused deposition modeling (FDM) technology uses thermoplastic filament for layer by layer fabrication of objects. To make functional objects with desired properties, composite filaments are required in the FDM. In this thesis, less expensive mesoporous Nano carbon (NC) and carbon nanotube (CNT) infused in Polylactide (PLA) thermoplastic filaments were fabricated to improve the electrical properties and maintain sufficient strength for 3D printing. Solution blending was used for nanocomposite fabrication and melt extrusion was employed to make cylindrical filaments. Mechanical and electrical properties of 1 to 20 wt% of NC and 1 to 3 wt% of CNT filaments were investigated and significant improvement of conductivity (3.76 S/m) and sufficient yield strength (35MPa) were obtained. Scanning electron microscopy (SEM) images exhibited uniform dispersion of nanoparticles in polymer matrix and differential scanning calorimetry (DSC) results showed no significant changes in the glass transition temperature (Tg) for all the compositions. Perspective uses of this filament are for fabrication of electrical wires in 3D printed robots, drones, prosthetics, orthotics and others.

Inhibition of myosin light-chain phosphorylation inverts the birefringence response of porcine airway smooth muscle

PubMed Central

Smolensky, Alexander V; Gilbert, Susan H; Harger-Allen, Margaret; Ford, Lincoln E

2007-01-01

Muscle birefringence, caused mainly by parallel thick filaments, increases in smooth muscle during stimulation, signalling thick filament formation upon activation. The reverse occurs in skeletal muscle, where a decrease in birefringence has been correlated with crossbridge movement away from the thick filaments. When force generation by trachealis muscle was inhibited with wortmannin, which inhibits myosin light-chain phosphorylation and thick-filament formation, but not the calcium increase caused by stimulation, the birefringence response inverted, suggesting crossbridge movement similar to that of skeletal muscle. Resistance to quick stretches was much greater in stimulated muscle than in unstimulated muscle before wortmannin treatment and no different in stimulated and unstimulated muscle after force inhibition by wortmannin. Before wortmannin treatment, stimulation reduced thick-filament cross-sectional areas in electron micrographs by 44%. After force inhibition by wortmannin, filament areas were not significantly different in stimulated and unstimulated muscle and not significantly different from those of relaxed muscle without wortmannin treatment. These results suggest that myofibrillar-space calcium causes crossbridges to move away from the thick filaments without firmly attaching to thin filaments. PMID:17095560

Hemispheric Preference and Cyclic Variation of Solar Filament Chirality

NASA Astrophysics Data System (ADS)

Hazra, Soumitra; Mahajan, Sushant S.; Douglas, William; Martens, Petrus C.

2017-08-01

Although the hemispheric preference of magnetic topological features in the solar atmosphere is a well-established fact, strength and cyclic variation of the hemispheric rule is a debatable issue. In this work, we study the chirality of 3480 solar filaments from 2000 to 2016. We determine the chirality of filaments manually and compare with the results obtained from the Advanced Automated Filament Detection and Characterization Code (AAFDCC). We find that 83% of our manually determined filaments follow the hemispheric chirality rule, while 58% of automatically determined filamentsfollow the same. We also compare our result with an other manually compiled list by Pevtsov et al. (2003). We find that our list matches Pevtsovs manually compiled list with 90% accuracy. We also find that the hemispheric chirality rule does not vary from cycle to cycle. However, the strength of the hemispheric preference decreases at the end and beginning phase of the solar cycle.

A study of the diffusional behavior of a two-phase metal matrix composite exposed to a high temperature environment

NASA Technical Reports Server (NTRS)

Tenney, D. R.

1974-01-01

The progress of diffusion-controlled filament-matrix interaction in a metal matrix composite where the filaments and matrix comprise a two-phase binary alloy system was studied by mathematically modeling compositional changes resulting from prolonged elevated temperature exposure. The analysis treats a finite, diffusion-controlled, two-phase moving-interface problem by means of a variable-grid finite-difference technique. The Ni-W system was selected as an example system. Modeling was carried out for the 1000 to 1200 C temperature range for unidirectional composites containing from 6 to 40 volume percent tungsten filaments in a Ni matrix. The results are displayed to show both the change in filament diameter and matrix composition as a function of exposure time. Compositional profiles produced between first and second nearest neighbor filaments were calculated by superposition of finite-difference solutions of the diffusion equations.

Wind stress and heat fluxes over a Brazilian Coastal Upwelling

NASA Astrophysics Data System (ADS)

Dourado, Marcelo; Candella, Rogério

2017-04-01

Coastal upwelling zones have been intensively studied in the last decades especially due to their importance to the biological cycle. The coastal upwelling system of the Cabo Frio region (east coast of the Rio de Janeiro state, Brazil) keeps the surface water cold during most part of the year, what induces a stable atmospheric boundary layer associated to northeast winds. The main goal of this study is to investigate the wind stress and heat fluxes exchanges between the ocean and the atmosphere in that area. For this purpose, a set of hourly data meteorological and oceanographic data collected by a Wavescan metocean buoy anchored at 23o59S; 42oW, were used, as well as solar radiation and relative humidity from a terrestrial meteorological station from the Instituto Nacional de Meteorologia (InMet). COARE 3.0 algorithm was used to calculate the latent and sensible heat fluxes. In this discussion, positive values represent fluxes towards the ocean. The average net heat flux over our study period is 88 W m-2. The reduction of the net heat flux is due to the increase of the ocean latent heat loss, although a reduction in incoming shortwave radiation and an increase in ocean long wave cooling also contributes. The latent heat is 20 times larger than the sensible heat flux, but the mean value of the latent heat flux, 62 W m-2, is half the typical value found in open ocean. The temporal variability of both sensible and latent heat fluxes reflects their dependence on wind speed and air-sea temperature differences. When upwelling events, here periods when diurnal SST is lower than 18oC, are compared with undisturbed (without upwelling) events, it can be noted the sensible heat fluxes are positives and 10 times greater in magnitude. This is related to an increment, during these upwelling events, of the air-sea temperature difference and an increasing of the wind speed. The cold waters of the upwelling increase the air-sea temperature gradient and, also, the horizontal land-sea gradient. This could intensifies the sea breeze. At the same time, the latent heat flux to the atmosphere is reduced. As expected, cold waters from the upwelling imply in the reduction of the evaporation, and so the latent heat fluxes also reduce significantly. As upwelling events in this region are associated to the presence of the South Atlantic high pressure, NE winds, during these periods of cold water the net heat flux toward the ocean surface is intensified.

Spatial and temporal variability in coccolithophore abundance and distribution in the NW Iberian coastal upwelling system

NASA Astrophysics Data System (ADS)

Ausín, Blanca; Zúñiga, Diana; Flores, Jose A.; Cavaleiro, Catarina; Froján, María; Villacieros-Robineau, Nicolás; Alonso-Pérez, Fernando; Arbones, Belén; Santos, Celia; de la Granda, Francisco; Castro, Carmen G.; Abrantes, Fátima; Eglinton, Timothy I.; Salgueiro, Emilia

2018-01-01

A systematic investigation of the spatial and temporal variability in coccolithophore abundance and distribution through the water column of the NW Iberian coastal upwelling system was performed. From July 2011 to June 2012, monthly sampling at various water depths was conducted at two parallel stations located at 42° N. Total coccosphere abundance was higher at the outer-shelf station, where warmer, nutrient-depleted waters favoured coccolithophore rather than phytoplanktonic diatom blooms, which are known to dominate the inner-shelf location. In seasonal terms, higher coccosphere and coccolith abundances were registered at both stations during upwelling seasons, coinciding with high irradiance levels. This was typically in conjunction with stratified, nutrient-poor conditions (i.e. relaxing upwelling conditions). However, it also occurred during some upwelling events of colder, nutrient-rich subsurface waters onto the continental shelf. Minimum abundances were generally found during downwelling periods, with unexpectedly high coccolith abundance registered in subsurface waters at the inner-shelf station. This finding can only be explained if strong storms during these downwelling periods favoured resuspension processes, thus remobilizing deposited coccoliths from surface sediments, and hence hampering the identification of autochthonous coccolithophore community structure. At both locations, the major coccolithophore assemblages were dominated by Emiliania huxleyi, small Gephyrocapsa group, Gephyrocapsa oceanica, Florisphaera profunda, Syracosphaera spp., Coronosphaera mediterranea, and Calcidiscus leptoporus. Ecological preferences of the different taxa were assessed by exploring the relationships between environmental conditions and temporal and vertical variability in coccosphere abundance. These findings provide relevant information for the use of fossil coccolith assemblages in marine sediment records, in order to infer past environmental conditions, of particular importance for Paleoceanography. Both E. huxleyi and the small Gephyrocapsa group are proposed as proxies for the upwelling regime with a distinct affinity for different stages of the upwelling event: E. huxleyi was associated with warmer, nutrient-poor and more stable water column (i.e. upwelling relaxation stage) while the small Gephyrocapsa group was linked to colder waters and higher nutrient availability (i.e. early stages of the upwelling event), similarly to G. oceanica. Conversely, F. profunda is suggested as a proxy for the downwelling regime and low-productivity conditions. The assemblage composed by Syracosphaera pulchra, Coronosphaera mediterranea, and Rhabdosphaera clavigera may be a useful indicator of the presence of subtropical waters conveyed northward by the Iberian Poleward Current. Finally, C. leptoporus is proposed as an indicator of warmer, saltier, and oligotrophic waters during the downwelling/winter regime.

Comparative Evolution of Morphological Regulatory Functions in Candida Species

PubMed Central

Lackey, Erika; Vipulanandan, Geethanjali; Childers, Delma S.

2013-01-01

Morphological transitions play an important role in virulence and virulence-related processes in a wide variety of pathogenic fungi, including the most commonly isolated human fungal pathogen Candida albicans. While environmental signals, transcriptional regulators, and target genes associated with C. albicans morphogenesis are well-characterized, considerably little is known about morphological regulatory mechanisms and the extent to which they are evolutionarily conserved in less pathogenic and less filamentous non-albicans Candida species (NACS). We have identified specific optimal filament-inducing conditions for three NACS (C. tropicalis, C. parapsilosis, and C. guilliermondii), which are very limited, suggesting that these species may be adapted for niche-specific filamentation in the host. Only a subset of evolutionarily conserved C. albicans filament-specific target genes were induced upon filamentation in C. tropicalis, C. parapsilosis, and C. guilliermondii. One of the genes showing conserved expression was UME6, a key filament-specific regulator of C. albicans hyphal development. Constitutive high-level expression of UME6 was sufficient to drive increased filamentation as well as biofilm formation and partly restore conserved filament-specific gene expression in both C. tropicalis and C. parapsilosis, suggesting that evolutionary differences in filamentation ability among pathogenic Candida species may be partially attributed to alterations in the expression level of a conserved filamentous growth machinery. In contrast to UME6, NRG1, an important repressor of C. albicans filamentation, showed only a partly conserved role in controlling NACS filamentation. Overall, our results suggest that C. albicans morphological regulatory functions are partially conserved in NACS and have evolved to respond to more specific sets of host environmental cues. PMID:23913541

Magnetic Flux Emergence and the Initiation of Filament Eruptions and CMEs as Observed by the EUV Imaging Telescope on SOHO

NASA Astrophysics Data System (ADS)

Neupert, W. M.

2005-05-01

Solar observations over more than twenty years (e.g., Gaizauskas and Svestka, 1987, summarizing the "Flare Build-up Study", Feynman and Martin, 1995, and more recently, Wang and Sheeley, 1999) have demonstrated that emergence of new magnetic flux in the vicinity of quiescent filament fields frequently leads to the eruption of those filaments, given polarity orientations favorable for magnetic reconnection. Concurrently, models of the interaction of such magnetic flux configurations have been developed to explain the initiation of flares (e.g., Priest and Forbes, 2002) and coronal mass ejections (Chen et al., 2002). We have used observations made in the 195 Angstrom (Fe XII) band by the EUV imaging Telescope (EIT) on SOHO to identify instances of emerging flux, indicated by new EUV emission, and subsequent eruption of a quiescent filament in a search for coronal changes that might appear as a result of merging magnetic fields. Limiting our study to quiescent filaments distant from active regions, we have identified events in which a slow increase in filament height begins shortly (a few hours) after first appearance of an EUV emission source either within or beside the filament channel. For long filaments, the apex of the rising filament appears to lie above the developing EUV source, implying that the field supporting the filament is locally interacting with the emerging field. Transient EUV features at onset of the eruptive phase include low-lying loops over the neutral line and, more rarely, localized sources apparently associated with the rising filament. No evidence of reconfiguring of an overlying corona (only faintly detected by the EIT) prior to CME initiation has been found. Our results support the hypothesis that at least in some instances the emergence of new magnetic field leads to a loss of filament equilibrium and a coronal mass ejection. This work is supported by NASA Intergovernmental Transfer W-10118 to NOAA's Space Environment Center. SOHO is a project of international cooperation between ESA and NASA.

Fundamental Mechanisms of Tensile Fracture in Aluminum Sheet Unidirectionally Reinforced with Boron Filament. Ph.D. Thesis - Virginia Polytechnic Inst.

NASA Technical Reports Server (NTRS)

Herring, H. W.

1971-01-01

Results are presented from an experimental research effort to gain a more complete understanding of the physics of tensile fracture in unidirectionally reinforced B-Al composite sheet. By varying the degree of filament degradation resulting from fabrication, composite specimens were produced which failed in tension by the cumulative mode, the noncumulative mode, or by any desired combination of the two modes. Radiographic and acoustic emission techniques were combined to identify and physically describe a previously unrecognized fundamental fracture mechanism which was responsible for the noncumulative mode. The tensile strength of the composite was found to be severely limited by the noncumulative mechanism which involved the initiation and sustenance of a chain reaction of filament fractures at a relatively low stress level followed by ductile fracture of the matrix. The minimum average filament stress required for initiation of the fracture mechanism was shown to be approximately 170 ksi, and appeared to be independent of filament diameter, number of filament layers, and the identity of the matrix alloy.

Bacterial and Archaeal Communities Variability Associated with Upwelling and Anthropogenic Pressures in the Protection Area of Arraial do Cabo (Cabo Frio region - RJ).

PubMed

Coelho-Souza, Sergio A; Araújo, Fábio V; Cury, Juliano C; Jesus, Hugo E; Pereira, Gilberto C; Guimarães, Jean R D; Peixoto, Raquel S; Dávila, Alberto M R; Rosado, Alexandre S

2015-09-01

Upwelling systems contain a high diversity of pelagic microorganisms and their composition and activity are defined by factors like temperature and nutrient concentration. Denaturing gradient gel electrophoresis (DGGE) technique was used to verify the spatial and temporal genetic variability of Bacteria and Archaea in two stations of the Arraial do Cabo coastal region, one under upwelling pressure and another under anthropogenic pressure. In addition, biotic and abiotic variables were measured in surface and deep waters from three other stations between these stations. Six samplings were done during a year and adequately represented the degrees of upwelling and anthropogenic pressures to the system. Principal Component Analysis (PCA) showed negative correlations between the concentrations of ammonia and phosphorous with prokaryotic secondary production and the total heterotrophic bacteria. PCA also showed negative correlation between temperature and the abundance of prokaryotic cells. Bacterial and archaeal compositions were changeable as were the oceanographic conditions, and upwelling had a regional pressure while anthropogenic pressure was punctual. We suggest that the measurement of prokaryotic secondary production was associated with both Bacteria and Archaea activities, and that substrate availability and temperature determine nutrients cycling.

Life in the sea of plenty: Seasonal and regional comparison of physiological performance of Euphausia hanseni in the northern Benguela upwelling system

NASA Astrophysics Data System (ADS)

Werner, Thorsten; Buchholz, Cornelia; Buchholz, Friedrich

2015-09-01

Variability in upwelling events may lead to periods of constrained food availability in the northern Benguela upwelling system (NBUS), thereby affecting the physiological state and metabolic activity of euphausiids. Most attention has so far been paid to seasonal effects but little is known about regional variability. Metabolic activity (expressed by respiration and excretion rates) and physiological state (expressed by reproductive effort and moult activity) in Euphausia hanseni were examined at different stations during austral summer (minimum upwelling) and austral winter (maximum upwelling). Overall, regional differences in physiological state, influencing metabolic activity, were greater than seasonal ones, indicating favourable conditions for growth and reproduction year-round. Higher respiration rates were found for females in more advanced stages of sexual development. Moult stage did not affect oxygen consumption rates, however. The physiological state of E. hanseni at the time of capture may serve as a meaningful indicator of the associated hydrographic conditions in the NBUS, to be further used in eco-system analysis on seasonal or long-term time scales. A latitudinal comparison of species highlights the extraordinary physiological plasticity of euphausiids.

Internal structure of the upwelling events at Punta Gallinas (Colombian Caribbean) from modis-sst imagery

NASA Astrophysics Data System (ADS)

Alonso, J.; Blázquez, E.; Isaza-Toro, E.; Vidal, J.

2015-10-01

The upwelling at Punta Gallinas in the Guajira Peninsula (Colombian Caribbean) was studied from the point of view of the Mathematical Morphology using 10 years of monthly composite MODIS-SST imagery. Among all the morphological operators, the skeleton is widely used to compute the axis of the of the SST fields for the observed upwelling events. The skeleton is characterized by means of the Geometrical Theory of Measurement using the fractal dimension. The upwelling in the area is driven by the dynamic of the ITCZ (InterTropical Convergence Zone) and the relationship between the area and the East-West component of the trade winds has a lag of about 4 months. It has been found that the fractal dimension of the skeleton and the area of the upwelling are related. Some relationship was found between the fractal dimension of the skeleton (its complexity) and the Southern Oscillation Index by means of linear regression and cross-spectral analysis finding coherent energy at 1 year, 6 months and in the low frequency band. Finally, a sensitivity analysis between fractal dimension and threshold SST points out to take an extreme care at the time of fixing the last one.

Phytoplankton succession in an isolated upwelled Benguela water body in relation to different initial nutrient conditions

NASA Astrophysics Data System (ADS)

Wasmund, Norbert; Nausch, Günther; Hansen, Anja

2014-11-01

Freshly upwelled water is poor in phytoplankton biomass but rich in nutrients. With its ageing, phytoplankton biomass increases whereas the nutrients are consumed. The overall aim of our investigation was to check the succession in the phytoplankton composition as a consequence of changing nutrient conditions. The experiments were carried out in mesocosms filled with surface water in the northern Benguela region and installed on board of R/V "Maria S. Merian". In the freshly upwelled water, phytoplankton took up nitrogen at a higher rate than phosphorus if compared with the Redfield ratio. Therefore, nitrogen was exhausted already by day 6. Nitrogen limitation after day 6 was indicated by decreasing chlorophyll a (chla) concentrations, primary production rates and productivity indices and increasing C/N ratios in particulate matter. Despite nitrogen limitation, phosphorus addition stimulated further growth, mainly of diatoms, pointing to luxury uptake. Cyanobacteria did not develop and nitrogen fixation was zero even with phosphorus and iron addition. Diatoms stay the most important group in the freshly upwelled water, but autotrophic and heterotrophic dinoflagellates increase strongly in the matured upwelled water. Mesocosms excluded disturbances by advective water transports, which influence the study of succssions under field conditions.

The Cape Ghir filament system in August 2009 (NW Africa)

NASA Astrophysics Data System (ADS)

Sangrà, Pablo; Troupin, Charles; Barreiro-González, Beatriz; Desmond Barton, Eric; Orbi, Abdellatif; Arístegui, Javier

2015-06-01

In the framework of the Canaries-Iberian marine ecosystem Exchanges (CAIBEX) experiment, an interdisciplinary high-resolution survey was conducted in the NW African region of Cape Ghir (30°38'N) during August 2009. The anatomy of a major filament is investigated on scales down to the submesoscale using in situ and remotely sensed data. The filament may be viewed as a system composed of three intimately connected structures: a small, shallow, and cold filament embedded within a larger, deeper, and cool filament and an intrathermocline anticyclonic eddy (ITE). The cold filament, which stretches 110 km offshore, is a shallow feature 60 m deep and 25 km wide, identified by minimal surface temperatures and rich in chlorophyll a. This structure comprises two asymmetrical submesoscale (˜18 km) fronts with jets flowing in opposite directions. The cold filament is embedded near the equatorward boundary of a much broader region of approximately 120 km width and 150 m depth that forms the cool filament and stretches at least 200 km offshore. This cool region, partly resulting from the influence of cold filament, is limited by two asymmetrical mesoscale (˜50 km) frontal boundaries. At the ITE, located north of the cold filament, we observe evidence of downwelling as indicated by a relatively high concentration of particles extending from the surface to more than 200 m depth. We hypothesize that this ITE may act as a sink of carbon and thus the filament system may serve dual roles of offshore carbon export and carbon sink.

Physiological acclimation to elevated temperature in a reef-building coral from an upwelling environment

NASA Astrophysics Data System (ADS)

Mayfield, A. B.; Fan, T.-Y.; Chen, C.-S.

2013-12-01

Recent work has found that pocilloporid corals from regions characterized by unstable temperatures, such as those exposed to periodic upwelling, display a remarkable degree of phenotypic plasticity. In order to understand whether important reef builders from these upwelling reefs remain physiologically uncompromised at temperatures they will experience in the coming decades as a result of global climate change, a long-term elevated temperature experiment was conducted with Pocillopora damicornis specimens collected from Houbihu, a small embayment within Nanwan Bay, southern Taiwan that is characterized by 8-9 °C temperature changes during upwelling events. Upon nine months of exposure to nearly 30 °C, all colony (mortality and surface area), polyp ( Symbiodinium density and chlorophyll a content), tissue (total thickness), and molecular (gene expression and molecular composition)-level parameters were documented at similar levels between experimental corals and controls incubated at 26.5 °C, suggesting that this species can readily acclimate to elevated temperatures that cause significant degrees of stress, or even bleaching and mortality, in conspecifics of other regions of the Indo-Pacific. However, the gastrodermal tissue layer was relatively thicker in corals of the high temperature treatment sampled after nine months, possibly as an adaptive response to shade Symbiodinium from the higher photosynthetically active radiation levels that they were experiencing at that sampling time. Such shading may have prevented high light and high temperature-induced photoinhibition, and consequent bleaching, in these samples.

Piecewise Delamination Drives Uplift in the Atlas Mountains Region of Morocco

NASA Astrophysics Data System (ADS)

Bezada, M. J.; Humphreys, E.; Martin Davila, J.; mimoun, H.; Josep, G.; Palomeras, I.

2013-12-01

The elevation of the intra-continental Atlas Mountains of Morocco and surrounding regions requires a mantle component of buoyancy, and there is consensus that this buoyancy results from an abnormally thin lithosphere. Lithospheric delamination under the Atlas Mountains and thermal erosion caused by upwelling mantle have each been suggested as thinning mechanisms. We use seismic tomography to image the upper mantle of Morocco by inverting teleseimic p-wave delay times, complemented with local delays, recorded on a dense array of stations in the Iberian peninsula and Morocco. A surface wave model provides constraint on the shallower layers. We determine the geometry of lithospheric cavities and mantle upwelling beneath the Middle Atlas and central High Atlas, and image delaminated lithosphere at ~400 km beneath the Middle Atlas. We propose discontinuous delamination of an intrinsically unstable Atlas lithosphere, enabled by the presence of anomalously hot mantle, as a mechanism for producing the imaged structures. The Atlas lithosphere was made unstable by a combination of tectonic shortening and eclogite loading during Mesozoic rifting and Cenozoic magmatism. The presence of hot mantle, sourced from regional upwellings in northern Africa or the Canary Islands, enabled the mobilization of this lithosphere. Flow around the retreating Alboran slab focused upwelling mantle under the Middle Atlas, where we image the most recent delamination. The Atlas Mountains of Morocco stand as an example of mantle-generated uplift and large-scale lithospheric loss in a mildly contractional orogen.

High-Latitude Neutral Density Structures Investigated by Utilizing Multi-Instrument Satellite Data and NRLMSISE-00 Simulations

NASA Astrophysics Data System (ADS)

Horvath, Ildiko; Lovell, Brian C.

2018-02-01

This study investigates various types of neutral density features developed in the cusp region during magnetically active and quiet times. Multi-instrument Challenging Minisatellite Payload data provide neutral density, electron temperature, neutral wind speed, and small-scale field-aligned current (SS-FAC) values. Gravity Recovery and Climate Experiment neutral density data are also employed. During active times, cusp densities or density spikes appeared with their underlying flow channels (FCs) and enhanced SS-FACs implying upwelling, fueled by Joule heating, within/above FCs. Both the moderate nightside cusp enhancements under disturbed conditions and the minor dayside cusp enhancements under quiet conditions developed without any underlying FC and enhanced SS-FACs implying the role of particle precipitation in their development. Observations demonstrate the relations of FCs, density spikes, and upwelling-related divergent flows and their connections to the underlying (1) dayside magnetopause reconnection depositing magnetospheric energy into the high-latitude region and (2) Joule heating-driven disturbance dynamo effects. Results provide observational evidence that the moderate nightside cusp enhancements and the minor dayside cusp enhancements detected developed due to direct heating by weak particle precipitation. Chemical compositions related to the dayside density spike and low cusp densities are modeled by Naval Research Laboratory Mass Spectrometer Incoherent Scatter Radar Extended 2000. Modeled composition outputs for the dayside density spike's plasma environment depict some characteristic upwelling signatures. Oppositely, in the case of low dayside cusp densities, composition outputs show opposite characteristics due to the absence of upwelling.

Application of LANDSAT satellite imagery and oceanographic data for verification of an upwelling mathematical model. [Atlantic Coast of Brazil

NASA Technical Reports Server (NTRS)

Dejesusparada, N. (Principal Investigator); Tanaka, K.; Almeida, E. G.

1978-01-01

The author has identified the following significant results. Data obtained during the cruise of the Cabo Frio and from LANDSAT imagery are used to discuss the characteristics of a linear model which simulates wind induced currents calculated from meteorological conditions at the time of the mission. There is a significant correspondance between the model of simulated horizontal water circulation, sea surface temperature, and surface currents observed on LANDSAT imagery. Close approximations were also observed between the simulation of vertical water movement (upwelling) and the oceanographic measurements taken along a series of points of the prevailing currents.

Relationships between chlorophyll density and ocean radiance as measured by U2/OCS: Algorithms, examples and comparison

NASA Technical Reports Server (NTRS)

Kim, H. H.; Hart, W. D.

1983-01-01

An ocean atmosphere radiative transfer process computation method which is suitable for determining lower boundary ocean albedo and other radiation components from spectral measurements of upwelling radiance taken from a high altitude platform is described. The method was applied to a set of color scanner data taken from slope water of the South Atlantic Bight to determine the influence of cholorophyll-a pigments in the sea on the ratio of upwelling radiance to down welling irradiance as a function of wavelength. The resulting chlorophyll concentrations are compared with measurements made by ships stationed along the flight path.

Wind-driven coastal upwelling and westward circulation in the Yucatan shelf

NASA Astrophysics Data System (ADS)

Ruiz-Castillo, Eugenio; Gomez-Valdes, Jose; Sheinbaum, Julio; Rioja-Nieto, Rodolfo

2016-04-01

The wind-driven circulation and wind-induced coastal upwelling in a large shelf sea with a zonally oriented coast are examined. The Yucatan shelf is located to the north of the Yucatan peninsula in the eastern Gulf of Mexico. This area is a tropical shallow body of water with a smooth sloping bottom and is one of the largest shelves in the world. This study describes the wind-driven circulation and wind-induced coastal upwelling in the Yucatan shelf, which is forced by easterly winds throughout the year. Data obtained from hydrographic surveys, acoustic current profilers and environmental satellites are used in the analysis. Hydrographic data was analyzed and geostrophic currents were calculated in each survey. In addition an analytical model was applied to reproduce the currents. The results of a general circulation model were used with an empirical orthogonal function analysis to study the variability of the currents. The study area is divided in two regions: from the 40 m to the 200 m isobaths (outer shelf) and from the coast to the 40 m isobath (inner shelf). At the outer shelf, observations revealed upwelling events throughout the year, and a westward current with velocities of approximately 0.2 m s-1 was calculated from the numerical model output and hydrographic data. In addition, the theory developed by Pedlosky (2007) for a stratified fluid along a sloping bottom adequately explains the current's primary characteristics. The momentum of the current comes from the wind, and the stratification is an important factor in its dynamics. At the inner shelf, observations and numerical model output show a wind-driven westward current with maximum velocities of 0.20 m s-1. The momentum balance in this region is between local acceleration and friction. A cold-water band is developed during the period of maximum upwelling.

Non-limiting food conditions for growth and production of the copepod community in a highly productive upwelling zone

NASA Astrophysics Data System (ADS)

Escribano, Rubén; Bustos-Ríos, Evelyn; Hidalgo, Pamela; Morales, Carmen E.

2016-09-01

Zooplankton production is critical for understanding marine ecosystem dynamics. This work estimates copepod growth and production in the coastal upwelling and coastal transition zones off central-southern Chile (~35 to 37°S) during a 3-year time series (2004, 2005, and 2006) at a fixed shelf station, and from spring-summer spatial surveys during the same period. To estimate copepod production (CP), we used species-biomasses and associated C-specific growth rates from temperature dependent equations (food-saturated) for the dominant species, which we assumed were maximal growth rates (gmax). Using chlorophyll-a concentrations as a proxy for food conditions, we determined a size-dependent half-saturation constant with the Michaelis-Menten equation to derive growth rates (g) under the effect of food limitation. These food-dependent C-specific growth rates were much lower (<0.1 d-1) than those observed in the field for the dominant species, while gmax for same species, in the range of 0.19-0.23 d-1 better represented the necessary growth to attain observed adult sizes of at least two copepods, Paracalanus cf. indicus and Calanus chilensis. Copepod biomass (CB) and rates of maximal copepod production (CPmax) obtained with gmax were higher in the coastal upwelling zone (<50 km from shore), and correlated significantly to oceanographic variables associated with upwelling conditions. Both CPmax and gmax exhibited negative trends at the fixed station from 2004 to 2006 in association with increased duration of upwelling in the latter year. Annual CPmax ranged between 24 and 52 g C m-2 y-1 with a mean annual P/B ratio of 7.3. We concluded that interannual variation in copepod production resulted from factors and processes regulating copepod abundance and biomass in the absence of bottom-up control, allowing copepods to grow without limitation due to food resources.

Upwelling Radiance at 976 nm Measured from Space Using a CCD Camera

NASA Technical Reports Server (NTRS)

Biswas, Abhijit; Kovalik, Joseph M.; Oaida, Bogdan V.; Abrahamson, Matthew J.; Wright, Malcolm W.

2015-01-01

The Optical Payload for Lasercomm Science (OPALS) Flight System on-board the International Space Station uses a charge coupled device (CCD) camera for receiving a beacon laser from Earth. Relative measurements of the background contributed by upwelling radiance under diverse illumination conditions and varying terrain is presented. In some cases clouds in the field-of-view allowed a comparison of terrestrial and cloud-top upwelling radiance. In this paper we will report these measurements and examine the extent of agreement with atmospheric model predictions.

Production, characterization, and modeling of mineral filled polypropylene filaments

NASA Astrophysics Data System (ADS)

George, Brian Robert

1999-11-01

This research produced mineral filled polypropylene filaments using a variety of fillers, characterized these filaments, and attempted to model their mechanical properties with current composite models. Also, these filaments were compared with bone to determine if they are suitable for modeling the mechanical properties of bone. Fillers used consist of wollastonite, talc, calcium carbonate, titanium dioxide, and hydroxyapatite. Fillers and polypropylene chips were combined and extruded into rods with the use of a mixer. The rods were chipped up and then formed into filaments through melt extrusion utilizing a piston extruder. Filaments with volume fractions of filler of 0.05, 0.10, 0.15, and 0.20 were produced. Additionally, some methods of trying to improve the properties of these filaments were attempted, but did not result in any significant property improvements. The fillers and filaments were visually characterized with a scanning electron microscope. Cross-sections, filament outer surfaces, fracture surfaces, and longitudinal cut open surfaces were viewed in this manner. Those filaments with anisotropic filler had some oriented filler particles, while all filaments suffered from poor adhesion between the polypropylene and the filler as well as agglomerations of filler particles. Twenty specimens of each filament were tensile tested and the average tenacity, strain, and modulus were calculated. Filaments containing talc, talc and wollastonite, titanium dioxide, or hydroxyapatite suffered from a drastic transition from ductile to brittle with the addition of 0.05 volume fraction of filler. This is evidenced by the sharp decrease in strain at this volume fraction of filler when compared to the strain of the unfilled polypropylene filament. Additionally, these same filaments suffered a sharp decrease in tenacity at the same volume fraction. These instant decreases are attributed to the agglomerations of filler in the filament. Generally, the modulus of the filaments increased with the increase in concentration of filler. The tensile tenacity, strain, and modulus were modeled with current composite models for particulate filled composites. The tenacity and strain models did not accurately predict the properties of the filaments, while the modulus models were more accurate, perhaps because the agglomerations of filler did not affect the modulus as much as it affected the tenacity and strain of the filaments. Production, characterization, and modeling of these filaments indicates that there are many areas for improvements, such as improved mixing of the filler and polypropylene, increased adhesion between matrix and filler, and decreased agglomerations of filler. Mechanically, these filaments can not match the properties of bone. However, they do have many structural similarities at the micro-mechanical level, so with some improvements in properties these filaments may be suitable models for modeling bone behavior.

Dynamic actin filaments control the mechanical behavior of the human red blood cell membrane

PubMed Central

Gokhin, David S.; Nowak, Roberta B.; Khoory, Joseph A.; de la Piedra, Alfonso; Ghiran, Ionita C.; Fowler, Velia M.

2015-01-01

Short, uniform-length actin filaments function as structural nodes in the spectrin-actin membrane skeleton to optimize the biomechanical properties of red blood cells (RBCs). Despite the widespread assumption that RBC actin filaments are not dynamic (i.e., do not exchange subunits with G-actin in the cytosol), this assumption has never been rigorously tested. Here we show that a subpopulation of human RBC actin filaments is indeed dynamic, based on rhodamine-actin incorporation into filaments in resealed ghosts and fluorescence recovery after photobleaching (FRAP) analysis of actin filament mobility in intact RBCs (∼25–30% of total filaments). Cytochalasin-D inhibition of barbed-end exchange reduces rhodamine-actin incorporation and partially attenuates FRAP recovery, indicating functional interaction between actin subunit turnover at the single-filament level and mobility at the membrane-skeleton level. Moreover, perturbation of RBC actin filament assembly/disassembly with latrunculin-A or jasplakinolide induces an approximately twofold increase or ∼60% decrease, respectively, in soluble actin, resulting in altered membrane deformability, as determined by alterations in RBC transit time in a microfluidic channel assay, as well as by abnormalities in spontaneous membrane oscillations (flickering). These experiments identify a heretofore-unrecognized but functionally important subpopulation of RBC actin filaments, whose properties and architecture directly control the biomechanical properties of the RBC membrane. PMID:25717184

Interchange Reconnection Associated with a Confined Filament Eruption: Implications for the Source of Transient Cold-dense Plasma in Solar Winds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, Ruisheng; Chen, Yao; Wang, Bing

The cold-dense plasma is occasionally detected in the solar wind with in situ data, but the source of the cold-dense plasma remains illusive. Interchange reconnections (IRs) between closed fields and nearby open fields are known to contribute to the formation of solar winds. We present a confined filament eruption associated with a puff-like coronal mass ejection (CME) on 2014 December 24. The filament underwent successive activations and finally erupted, due to continuous magnetic flux cancelations and emergences. The confined erupting filament showed a clear untwist motion, and most of the filament material fell back. During the eruption, some tiny blobsmore » escaped from the confined filament body, along newly formed open field lines rooted around the south end of the filament, and some bright plasma flowed from the north end of the filament to remote sites at nearby open fields. The newly formed open field lines shifted southward with multiple branches. The puff-like CME also showed multiple bright fronts and a clear southward shift. All the results indicate an intermittent IR existed between closed fields of the confined erupting filament and nearby open fields, which released a portion of filament material (blobs) to form the puff-like CME. We suggest that the IR provides a possible source of cold-dense plasma in the solar wind.« less

Elastic deformation and failure in protein filament bundles: Atomistic simulations and coarse-grained modeling.

PubMed

Hammond, Nathan A; Kamm, Roger D

2008-07-01

The synthetic peptide RAD16-II has shown promise in tissue engineering and drug delivery. It has been studied as a vehicle for cell delivery and controlled release of IGF-1 to repair infarcted cardiac tissue, and as a scaffold to promote capillary formation for an in vitro model of angiogenesis. The structure of RAD16-II is hierarchical, with monomers forming long beta-sheets that pair together to form filaments; filaments form bundles approximately 30-60 nm in diameter; branching networks of filament bundles form macroscopic gels. We investigate the mechanics of shearing between the two beta-sheets constituting one filament, and between cohered filaments of RAD16-II. This shear loading is found in filament bundle bending or in tensile loading of fibers composed of partial-length filaments. Molecular dynamics simulations show that time to failure is a stochastic function of applied shear stress, and that for a given loading time behavior is elastic for sufficiently small shear loads. We propose a coarse-grained model based on Langevin dynamics that matches molecular dynamics results and facilities extending simulations in space and time. The model treats a filament as an elastic string of particles, each having potential energy that is a periodic function of its position relative to the neighboring filament. With insight from these simulations, we discuss strategies for strengthening RAD16-II and similar materials.

Photoimaging of the multiple filamentation of femtosecond laser pulses in poly(methyl methacrylate) doped with 2,2-difluoro-4-(9-anthracyl)-6-methyl-1,3,2-dioxaborine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kulchin, Yu N; Vitrik, O B; Chekhlenok, A A

2013-12-31

We have studied the filamentation of femtosecond laser pulses (λ = 800 nm, ∼42 fs pulse duration) in poly(methyl methacrylate) doped with 2,2-difluoro-4-(9-anthracyl)-6-methyl-1,3,2- dioxaborine and the associated photomodification of the material. The results demonstrate that multiple filamentation occurs at pulse energies above 5 μJ. At a pulse energy of 1.5 mJ, it is accompanied by supercontinuum generation. The average filament length in PMMA is 9 mm and the filament diameter is ∼10 μm. An incident power density of ∼10{sup 12} W cm{sup -2} ensures inscription of the filament pattern owing to two-photon photochemical processes. Preliminary exposure to continuous light atmore » λ = 400 nm enables an ordered filament pattern to be written. (interaction of laser radiation with matter)« less

Rheology measurement for on-line monitoring of filaments proliferation in activated sludge tanks.

PubMed

Tixier, N; Guibaud, G; Baudu, M

2004-01-01

Rheological behaviour of filamentous sludges originated from activated sludge reactors was studied. Filamentous bulking was detected via a hysteresis loop developed from rheograms resulting from increasing-decreasing shear rates. The rheological parameter reduced hysteresis area (rHa), corresponding to the loop area developed by rheograms was used to quantify filamentous bulking. Application to the evolution of several bulkings was carried out and it was shown that filaments proliferation and disappearance were correlated with, respectively, the increasing and decreasing of the value of the parameter rHa. In parallel with rheological measurement, parameters used for the study of sludge quality, such as sludge volume index (SVI) and settling initial flow (F0), were determined for comparison during the evolution of several bulkings. It was shown that rHa was more sensitive to the appearance of filamentous bulking than SVI and F0, therefore it was concluded that detection of filamentous bulking can be shown from rHa.

Assembly and Turnover of Short Actin Filaments by the Formin INF2 and Profilin*

PubMed Central

Gurel, Pinar S.; A, Mu; Guo, Bingqian; Shu, Rui; Mierke, Dale F.; Higgs, Henry N.

2015-01-01

INF2 (inverted formin 2) is a formin protein with unique biochemical effects on actin. In addition to the common formin ability to accelerate actin nucleation and elongation, INF2 can also sever filaments and accelerate their depolymerization. Although we understand key attributes of INF2-mediated severing, we do not understand the mechanism by which INF2 accelerates depolymerization subsequent to severing. Here, we show that INF2 can create short filaments (<60 nm) that continuously turn over actin subunits through a combination of barbed end elongation, severing, and WH2 motif-mediated depolymerization. This pseudo-steady state condition occurs whether starting from actin filaments or monomers. The rate-limiting step of the cycle is nucleotide exchange of ADP for ATP on actin monomers after release from the INF2/actin complex. Profilin addition has two effects: 1) to accelerate filament turnover 6-fold by accelerating nucleotide exchange and 2) to shift the equilibrium toward polymerization, resulting in longer filaments. In sum, our findings show that the combination of multiple interactions of INF2 with actin can work in concert to increase the ATP turnover rate of actin. Depending on the ratio of INF2:actin, this increased flux can result in rapid filament depolymerization or maintenance of short filaments. We also show that high concentrations of cytochalasin D accelerate ATP turnover by actin but through a different mechanism from that of INF2. PMID:26124273

A Survery of the Correlation between Filament Chirality and Sigmoid Handedness

NASA Astrophysics Data System (ADS)

V, A.; Hazra, S.; Martin, S. F.; Martens, P. C.

2017-12-01

Sigmoid regions on the Sun are often the regions that cause Coronal Mass Ejections (CMEs). Large CMEs most often have filaments that erupt with them. This study focuses on the statistical relevance of the shape of the sigmoid and the chirality of the filament residing in these sigmoids. The study further extends to the relation between the directionality of filaments and the Earth-directed CMEs. Sigmoid data from Savcheva et al. (2014) between 2007 and 2012 and a compilation of data using the HEK Sigmoid Sniffer (Martens et al. 2012) along with Hinode XRT Soft X-ray images were used for analyzing data between 2013 and 2017. Hence this dataset consists of almost one solar cycle of data. A similar study done previously by Martens et al. (2013) analysed data for a solar cycle using an Advanced Automated Filament Detection & Characterization Code (Bernasconi, Rust & Hakim 2005). Considering that automated chirality detection is not foolproof, we present this study which uses manual determination of chirality for accuracy using high resolution chromospheric images. Mainly full disk images of soft X-ray obtained from Hinode XRT (X-Ray Telescope) have been used to find and ensure the S or Z shape of sigmoids. H-alpha images obtained from BBSO and Kanzelhohe Solar Observatory (KSO) are used in determining the chirality of filaments. The resolutions of BBSO and KSO data are 1k and 4k respectively. A comparison of the analysis of the chirality of filaments using both data will be presented. Although KSO gives a 4k resolution, it is still difficult to determine the chirality of small filaments. For this reason, high resolution images of H-alpha chromospheric filaments obtained from Helio Research and Solar Observing Optical Network (SOON) have been used for further analysis of chirality of those filaments that were undeterminable using the BBSO or KSO full disk images. The results of the comparison using the different resolutions are shown. The results of the correlation between sigmoid shape and filament chirality are also shown. Further, these results are used in determining the correlation with Earth directed CMEs and those that cause geo-magnetic storms. Savacheva, A. S., McKillop, S. C., McCauley, P. I., et al., 2014, 289Bernasconi, P. N., Rust, D. M., & Hakim, D., 2005, Sol. Phys., 228, 97 Martens, P., Yeates, A., & Pillai, K., 2013, IAU, 3000

Patterns and processes in the California Current System

NASA Astrophysics Data System (ADS)

Checkley, David M., Jr.; Barth, John A.

2009-12-01

The California Current System (CCS) is forced by the distribution of atmospheric pressure and associated winds in relation to the west coast of North America. In this paper, we begin with a simplified case of winds and a linear coast, then consider variability characteristic of the CCS, and conclude by considering future change. The CCS extends from the North Pacific Current (∼50°N) to off Baja California, Mexico (∼15-25°N) with a major discontinuity at Point Conception (34.5°N). Variation in atmospheric pressure affects winds and thus upwelling. Coastal, wind-driven upwelling results in nutrification and biological production and a southward coastal jet. Offshore, curl-driven upwelling results in a spatially large, productive habitat. The California Current flows equatorward and derives from the North Pacific Current and the coastal jet. Dominant modes of spatial and temporal variability in physical processes and biological responses are discussed. High surface production results in deep and bottom waters depleted in oxygen and enriched in carbon dioxide. Fishing has depleted demersal stocks more than pelagic stocks, and marine mammals, including whales, are recovering. Krill, squid, and micronekton are poorly known and merit study. Future climate change will differ from past change and thus prediction of the CCS requires an understanding of its dynamics. Of particular concern are changes in winds, stratification, and ocean chemistry.

Kinetics of N-Utilization By Natural Phytoplankton Assemblages During Upwelling Events At The NW Iberian Shelf

NASA Astrophysics Data System (ADS)

Brion, N.; Elskens, M.; Dehairs, F.; Baeyens, W.

2003-04-01

The concentration-dependent uptakes of nitrate, ammonium and the effect of ammo-nium on the f-ratio were surveyed in surface waters of the NW Iberian shelf during June 1997, July 1998 and September 1999. Because relationships between rates and substrate concentrations were quite variable, ranging from linear to convex shaped curves, they were fitted to rational functions. Stepwize regression analysis yielded subsequent model equations with reasonable statistical properties which allowed describing all but all a few cases. Differentiating these equations with respect to the concentration gave the slope of the tangent to the curve, i.e., the variation in rate expected for a given perturbation of the ambient substrate concentration. The initial slope value was then used as an index to gauge the "affinity" of the plankton community for the nitrogen substrate utilization. In June 1997, the situation at the Iberian shelf showed no upwelling except near Cape Finistère. Overall, the phytoplankton community displayed a high "affinity" for both nitrate and ammonium and low f-ratio values, which is indicative of a re-generated production regime. High ammonium regeneration rates supported furthermore these observations. It was also demonstrated that the new production rates is only marginally sensitive to changes of the ambient nitrate and/or ammonium concentrations. This indicates that the production regime is rather stable throughout. Only at Cape Finistère, nitrate concentrations were high reflecting the onset of an upwelling event. In this zone, the phytoplankton community, taking advantage of its high affinity for nitrate enhanced both total N-uptake rate and f-ratio. In July 1998, the situation evolved towards an extension to the south of the upwelling event starting at Cape Finistère. In this southern zone of the upwelling the phytoplankton community displayed generally a lower affinity for nitrate (but not for ammonium) than in 1997. In spite of this lower affinity, nitrate uptake rate was dominant resulting in f-ratio values greater than 0.5, a characteristic of a new production regime. The new production rate is only marginally sensitive to increases of the ambient nitrate, but is drastically inhibited by small increases of the ambient ammonium. The situation of September 1999 was very close to that observed in July 1998, with higher nitrate concentrations in the coastal northern part of the sampling area dominated by upwelling.

Ridge jumps associated with plume-ridge interaction: Mantle plume-lithosphere interaction and hotspot magmatism

NASA Astrophysics Data System (ADS)

Mittelstaedt, E.; Ito, G.

2007-12-01

Interaction of mantle plumes and young lithosphere near mid-ocean ridges can lead to changes in spreading geometry by shifts of the ridge-axis toward the plume as seen at various hotspots, notably Iceland and the Galapagos. Previous work has shown that, with a sufficient magma flux, heating of the lithosphere by magmatism can significantly weaken the plate and, in some cases, could cause ridge jumps. Upwelling hot asthenosphere can also weaken the plate through thermal and mechanical thinning of the lithosphere. Using the finite element code CITCOM, we solve the equations of continuity, momentum and energy to examine deformation in near-ridge lithosphere associated with relatively hot upwelling asthenosphere and seafloor spreading. The mantle and lithosphere obey a non-Newtonian viscous rheology with plastic failure in the cold part of the lithosphere simulated by imposing an effective yield stress. Temperatures of the lithospheric thermal boundary region are initially given a square-root of age thermal profile while a hot patch is placed at the bottom to initiate a mantle-plume like upwelling. The effect of upwelling asthenosphere on ridge jumps is evaluated by varying three parameters: the plume excess temperature, the spreading rate and the distance of the plume from the ridge axis. Preliminary results show plume related thinning and weakening of the lithosphere over a wide area (100's of km's) with the rate of thinning increasing with the excess temperature of the plume. Initially, thinning occurs as the plume approaches the lithosphere and asthenospheric material is forced out of the way. As the plume material comes into contact with the lithosphere, thinning occurs through heating and mechanical removal of the thermal boundary layer. Thinning of the lithosphere is one of the primary factors in achieving a ridge jump. Another is large tensile stresses which can facilitate the initiation of rifting at this weakened location. Model stresses induced by the buoyant asthenosphere are significant fractions of the lithospheric yield strength near the plume and reach a maximum at the center of plume upwelling. Models predict that ridge jumps are not likely to occur by lithosphere interaction with the hot upwelling plume alone but require the added effects of magmatic weakening at the hotspot.

Assessment of chlorophyll variability along the northwestern coast of Iberian Peninsula

NASA Astrophysics Data System (ADS)

Picado, A.; Alvarez, I.; Vaz, N.; Varela, R.; Gomez-Gesteira, M.; Dias, J. M.

2014-10-01

The northwestern coast of the Iberian Peninsula is characterized by a high primary production mainly supported by coastal upwelling, creating an extraordinary commercial interest for fisheries and aquaculture. Considering chlorophyll-a (Chl-a) as an indicator of primary production, its spatio-temporal variability was researched in this study in the surface water of this upwelling region from 1998 to 2007. Satellite derived Chl-a, Sea Surface Temperature (SST) and Ekman transport data as well as the inflow of the main rivers discharging into the study area were used to investigate the origin of the Chl-a concentration. Empirical Orthogonal Function (EOF) analysis of weekly Chl-a images was performed, as well as correlation analysis between Chl-a concentration, Ekman transport and river discharge. EOF results suggest that the highest Chl-a concentration occurs near the coast up to 60 km offshore. The interannual variability of Chl-a, SST and Ekman transport was also studied considering summer and winter months. Generally, 2005, 2006 and 2007 were the most productive years during the summer months with high Chl-a concentrations along the coast associated to the strong upwelling conditions observed. Otherwise, 1998 seemed to be the most productive year during winter. The absence of upwelling favorable conditions together with localized low SST and considerable discharges, suggests that the high Chl-a concentrations observed during this period are mainly due to the entrance of nutrients through river runoff. However, in winter, high concentrations of colored dissolved organic matter (CDOM), associated with river runoff, are present in the ocean surface, leading to an erroneous strong signal of the satellite. During winter correlations of 0.58 and 0.49 were found between Chl-a concentration and Douro and Minho discharges, respectively, evidencing that high Chl-a concentration was related with river runoff. Otherwise, during summer, Chl-a and Ekman transport exhibited a correlation of - 0.38 indicating that high Chl-a is associated to upwelling events. In summary, it was found that the spatio-temporal variability of Chl-a along the northwestern coast of Iberian Peninsula exhibited the clear influence of upwelling events during summer. Conversely, the variability during winter was mainly due to entrance of nutrients through the rivers discharge which flow into the area.

Seasonal and annual variability of coastal sulphur plumes in the northern Benguela upwelling system

PubMed Central

Dadou, Isabelle

2018-01-01

We investigated the seasonal and annual variability of surface sulphur plumes in the northern Benguela upwelling system off Namibia because of their significant impacts on the marine ecosystem, fishing industry, aquaculture farming and tourism due to their toxic properties. We identified the sulphur plumes in ocean colour satellite data of the medium resolution imaging spectrometer (MERIS) for the 2002–2012 time period using the differences in the spectral properties of Namibian Benguela optical water types. The sulphur events have a strong seasonal cycle with pronounced main and off-seasons forced by local and remote-driven processes. The main peak season is in late austral summer and early austral autumn at the beginning of the annual upwelling cycle caused by increasing equatorwards alongshore winds. The sulphur plume activity is high between February and April during the seasonal oxygen minimum associated with the seasonal reduction of cross-shore ventilation of the bottom waters, the seasonal southernmost position of the Angola Benguela Frontal Zone, the seasonal maximum of water mass fractions of South Atlantic and Angola Gyre Central Waters as well as the seasonal arrival of the downwelling coastal trapped waves. The off-season is in austral spring and early austral summer during increased upwelling intensity and enhanced oxygen supply. The annual variability of sulphur events is characterized by very high activities in years 2004, 2005 and 2010 interrupted by periods of lower activity in years 2002 to 2003, 2006 to 2009 and 2011 to 2012. This result can be explained by the relative contributions or adding effects of local and remote-driven forces (from the equatorial area). The probability for the occurrence of sulphur plumes is enhanced in years with a lower annual mean of upwelling intensity, decreased oxygen supply associated with decreased lateral ventilation of bottom waters, more southern position of the Angola Benguela Frontal Zone, increased mass fraction of South Atlantic Central Water and stronger downwelling coastal trapped waves. Understanding of the variability and forcing processes of the toxic sulphur events will help in the future to monitor and forecast them as well as to manage their social and economic consequences in the northern Benguela upwelling system off Namibia. PMID:29420587

A Simple Criterion to Estimate Performance of Pulse Jet Mixed Vessels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pease, Leonard F.; Bamberger, Judith A.; Mahoney, Lenna A.

Pulse jet mixed process vessels comprise a key element of the U.S. Department of Energy’s strategy to process millions of gallons of legacy nuclear waste slurries. Slurry suctioned into a pulse jet mixer (PJM) tube at the end of one pulse is pneumatically driven from the PJM toward the bottom of the vessel at the beginning of the next pulse, forming a jet. The jet front traverses the distance from nozzle outlet to the bottom of the vessel and spreads out radially. Varying numbers of PJMs are typically arranged in a ring configuration within the vessel at a selected radiusmore » and operated concurrently. Centrally directed radial flows from neighboring jets collide to create a central upwell that elevates the solids in the center of the vessel when the PJM tubes expel their contents. An essential goal of PJM operation is to elevate solids to the liquid surface to minimize stratification. Solids stratification may adversely affect throughput of the waste processing plant. Unacceptably high slurry densities at the base of the vessel may plug the pipeline through which the slurry exits the vessel. Additionally, chemical reactions required for processing may not achieve complete conversion. To avoid these conditions, a means of predicting the elevation to which the solids rise in the central upwell that can be used during vessel design remains essential. In this paper we present a simple criterion to evaluate the extent of solids elevation achieved by a turbulent upwell jet. The criterion asserts that at any location in the central upwell the local velocity must be in excess of a cutoff velocity to remain turbulent. We find that local velocities in excess of 0.6 m/s are necessary for turbulent jet flow through both Newtonian and yield stress slurries. By coupling this criterion with the free jet velocity equation relating the local velocity to elevation in the central upwell, we estimate the elevation at which turbulence fails, and consequently the elevation at which the upwell fails to further lift the slurry. Comparing this elevation to the vessel fill level predicts whether the jet flow will achieve the full vertical extent of the vessel at the center. This simple local-velocity criterion determines a minimum PJM nozzle velocity at which the full vertical extent of the central upwell in PJM vessels will be turbulent. The criterion determines a minimum because flow in regions peripheral to the central upwelling jet may not be turbulent, even when the center of the vessel in the upwell is turbulent, if the jet pulse duration is too short. The local-velocity criterion ensures only that there is sufficient wherewithal for the turbulent jet flow to drive solids to the surface in the center of the vessel in the central upwell.« less

Method for preparing metallated filament-wound structures

DOEpatents

Peterson, George R.

1979-01-01

Metallated graphite filament-wound structures are prepared by coating a continuous multi-filament carbon yarn with a metal carbide, impregnating the carbide coated yarn with a polymerizable carbon precursor, winding the resulting filament about a mandrel, partially curing the impregnation in air, subjecting the wound composite to heat and pressure to cure the carbon precursor, and thereafter heating the composite in a sizing die at a pressure loading of at least 1000 psi for graphitizing the carbonaceous material in the composite. The carbide in the composite coalesces into rod-like shapes which are disposed in an end-to-end relationship parallel with the filaments to provide resistance to erosion in abrasive laden atmospheres.

The Impact of Ozone Depleting Substances on Tropical Upwelling, as Revealed by the Absence of Lower Stratospheric Cooling since the Late 1990s

NASA Astrophysics Data System (ADS)

Polvani, L. M.; Wang, L.; Aquila, V.; Waugh, D.

2016-12-01

The impact of ozone depleting substances on global lower stratospheric temperature trends is widely recognized. In the tropics, however, understanding lower stratospheric temperature trends has proven more challenging. While the tropical lower stratospheric cooling observed from 1979 to 1997 has also been shown to result almost entirely from ozone decreases, those ozone trends cannot be of chemical origin, as active chlorine is not abundant in the tropical lower stratosphere. The 1979-1997 tropical ozone trends are believed to originate from enhanced upwelling which, it is often stated, would be driven by increasing concentrations of well mixed greenhouse gases. In this study, using simple arguments based on observational evidence after 1997, combined with model integrations with incrementally added single forcings, we argue that ozone depleting substances, not well mixed greenhouse gases, have been the primary driver of temperature and ozone trends in the tropical lower stratosphere until 1997, and this has occurred because ozone depleting substances affect tropical upwelling and the entire Brewer-Dobson circulation.

Mesoscale Variation of Mechanisms Contributing to Stability in Rocky Shore Communities

PubMed Central

Valdivia, Nelson; González, Andrés E.; Manzur, Tatiana; Broitman, Bernardo R.

2013-01-01

Environmental fluctuations can generate asynchronous species’ fluctuations and community stability, due to compensatory dynamics of species with different environmental tolerances. We tested this hypothesis in intertidal hard-bottom communities of north-central Chile, where a persistent upwelling centre maintains a mosaic in sea surface temperatures (SST) over 10s of kilometres along the shore. Coastal upwelling implies colder and temporally more stable SST relative to downstream sites. Uni- and multivariate analyses of multiyear timeseries of SST and species abundances showed more asynchronous fluctuations and higher stability in sites characterised by warmer and more variable SST. Nevertheless, these effects were weakened after including data obtained in sites affected by less persistent upwelling centres. Further, dominant species were more stable in sites exposed to high SST variability. The strength of other processes that can influence community stability, chiefly statistical averaging and overyielding, did not vary significantly between SST regimes. Our results provide observational evidence supporting the idea that exogenously driven compensatory dynamics and the stabilising effects of dominant species can determine the stability of ecosystems facing environmental fluctuations. PMID:23326592

a Numerical Study of Basic Coastal Upwelling Processes.

NASA Astrophysics Data System (ADS)

Li, Zhihong

Available from UMI in association with The British Library. Two-dimensional (2-D) and three-dimensional (3 -D) numerical models with a second order turbulence closure are developed for the study of coastal upwelling processes. A logarithmic coordinate system is introduced to obtain increased resolution in the regions near the surface and bottom where high velocity shear occurs and in the upwelling zone where its width is confined to the coast. In the experiments performed in the 2-D model an ocean initially at rest is driven by a spatially uniform alongshore wind-stress. There is a development of an offshore flow in the surface layer and an onshore flow below the surface layer. In the wind-stress direction there is a development of a coastal surface jet. The neglect of the alongshore pressure gradient leads to the intensification of the jet, and the concentration of the onshore flow in an over-developed Ekman layer yielding an unrealistic deepening of a bottom mixed layer. When bathymetric variations are introduced, some modifications in the dynamics of upwelling are observed. On the shelf region there is another upwelling zone and isotherms are interested with the bottom topography. When an alongshore pressure gradient is added externally into the model, the strength of the coastal jet decreases and a coastal undercurrent exists at greater depth. In addition the return onshore flow is largely independent of depth and the deepening of the bottom mixed layer disappears. In the experiments performed in the 3-D model a wind-stress with limited domain is used. Coastally trapped waves are generated and propagate along the coastline leading to a development of an alongshore pressure gradient, which has a significant effect on upwelling. The evolution of the alongshore flow, vertical velocity and the temperature is determined by both remote and local wind due to the propagation of waves. As the integration proceeds, the flow pattern becomes remarkably 3-dimensional. Finally the influence of bathymetric variations on upwelling processes is examined.

The use of circulation weather types to predict upwelling activity along the Western Iberian Peninsula coast

NASA Astrophysics Data System (ADS)

Ramos, Alexandre M.; Cordeiro Pires, Ana; Sousa, Pedro M.; Trigo, Ricardo M.

2013-04-01

Coastal upwelling is a phenomenon that occurs in most western oceanic coasts due to the presence of mid-latitude high-pressure systems that generate equatorward winds along the coast and consequent offshore displacement of surface waters that in turn cause deeper, colder, nutrient-rich waters to arise. In western Iberian Peninsula (IP) the high-pressure system associated to northerly winds occurs mainly during spring and summer. Upwelling systems are economically relevant, being the most productive regions of the world ocean and crucial for fisheries. In this work, we evaluate the intra- and inter-annual variability of the Upwelling Index (UI) off the western coast of the IP considering four locations at various latitudes: Rias Baixas, Aveiro, Figueira da Foz and Cabo da Roca. In addition, the relationship between the variability of the occurrence of several circulation weather types (Ramos et al., 2011) and the UI variability along this coast was assessed in detail, allowing to discriminate which types are frequently associated with strong and weak upwelling activity. It is shown that upwelling activity is mostly driven by wind flow from the northern quadrant, for which the obtained correlation coefficients (for the N and NE types) are higher than 0.5 for the four considered test locations. Taking into account these significant relationships, we then developed statistical multi-linear regression models to hindcast upwelling series (April to September) at the four referred locations, using monthly frequencies of circulation weather types as predictors. Modelled monthly series reproduce quite accurately observational data, with correlation coefficients above 0.7 for all locations, and relatively small absolute errors. Ramos AM, Ramos R, Sousa P, Trigo RM, Janeira M, Prior V (2011) Cloud to ground lightning activity over Portugal and its association with Circulation Weather Types. Atmospheric Research 101:84-101. doi: 10.1016/j.atmosres.2011.01

Temporal and spatial variability of dissolved organic and inorganic phosphorus, and metrics of phosphorus bioavailability in an upwelling-dominated coastal system

NASA Astrophysics Data System (ADS)

Ruttenberg, Kathleen C.; Dyhrman, Sonya T.

2005-10-01

High-frequency temporal and spatial shifts in the various dissolved P pools (total, inorganic, and organic) are linked to upwelling/relaxation events and to phytoplankton bloom dynamics in the upwelling-dominated Oregon coastal system. The presence and regulation of alkaline phosphatase activity (APA) is apparent in the bulk phytoplankton population and in studies of cell-specific APA using Enzyme Labeled Fluorescence (ELF®). Spatial and temporal variability are also evident in phytoplankton community composition and in APA. The spatial pattern of dissolved phosphorus and APA variability can be explained by bottom-controlled patterns of upwelling, and flushing times of different regions within the study area. The presence of APA in eukaryotic taxa indicates that dissolved organic phosphorus (DOP) may contribute to phytoplankton P nutrition in this system, highlighting the need for a more complete understanding of P cycling and bioavailability in the coastal ocean.

Lagrangian Timescales of Southern Ocean Upwelling in a Hierarchy of Model Resolutions

NASA Astrophysics Data System (ADS)

Drake, Henri F.; Morrison, Adele K.; Griffies, Stephen M.; Sarmiento, Jorge L.; Weijer, Wilbert; Gray, Alison R.

2018-01-01

In this paper we study upwelling pathways and timescales of Circumpolar Deep Water (CDW) in a hierarchy of models using a Lagrangian particle tracking method. Lagrangian timescales of CDW upwelling decrease from 87 years to 31 years to 17 years as the ocean resolution is refined from 1° to 0.25° to 0.1°. We attribute some of the differences in timescale to the strength of the eddy fields, as demonstrated by temporally degrading high-resolution model velocity fields. Consistent with the timescale dependence, we find that an average Lagrangian particle completes 3.2 circumpolar loops in the 1° model in comparison to 0.9 loops in the 0.1° model. These differences suggest that advective timescales and thus interbasin merging of upwelling CDW may be overestimated by coarse-resolution models, potentially affecting the skill of centennial scale climate change projections.

Shift in the species composition of the diatom community in the eutrophic Mauritanian coastal upwelling: Results from a multi-year sediment trap experiment (2003-2010)

NASA Astrophysics Data System (ADS)

Romero, Oscar E.; Fischer, Gerhard

2017-12-01

A multiannual, continuous sediment trap experiment was conducted at the mooring site CBeu (Cape Blanc eutrophic, ca. 20 °N, ca. 18 °W; trap depth = 1256-1296 m) in the high-productive Mauritanian coastal upwelling. Here we present fluxes and the species-specific composition of the diatom assemblage, and fluxes of biogenic silica (BSi, opal) and total organic carbon (TOC) for the time interval June 2003-Feb 2010. Flux ranges of studied parameters are (i) total diatoms = 1.2 ∗ 108-4.7 ∗ 104 valves m-2 d-1 (average = 5.9 × 106 valves ± 1.4 × 107); (ii) BSi = 296-0.5 mg m-2 d-1 (average = 41.1 ± 53.5 mg m-2 d-1), and (iii) TOC = 97-1 mg m-2 d-1 (average = 20.5 ± 17.8 mg m-2 d-1). Throughout the experiment, the overall good match of total diatom, BSi and TOC fluxes is reasonably consistent and reflects well the temporal occurrence of the main Mauritanian upwelling season. Spring and summer are the most favorable seasons for diatom production and sedimentation: out of the recorded 14 diatom maxima of different magnitude, six occurred in spring and four in summer. The diverse diatom community at site CBeu is composed of four main assemblages: benthic, coastal upwelling, coastal planktonic and open-ocean diatoms, reflecting different productivity conditions and water masses. A striking feature of the temporal variability of the diatom populations is the persistent pattern of seasonal groups' contribution: benthic and coastal upwelling taxa dominated during the main upwelling season in spring, while open-ocean diatoms were more abundant in fall and winter, when the upper water column becomes stratified, upwelling relaxes and productivity decreases. The relative abundance of benthic diatoms strongly increased after 2006, yet their spring-summer contribution remained high until the end of the trap experiment. The occurrence of large populations of benthic diatoms at the hemipelagic CBeu site is interpreted to indicate transport from shallow waters via nepheloid layers. We argue that a significant amount of valves, BSi and TOC produced in waters overlying the Banc d'Arguin and the Mauritanian shelf is effectively transported to the CBeu trap in intermediate waters at the outer Mauritanian slope. The impact of the intermediate and bottom-near nepheloid layers-driven transport in the transfer of valves and bulk particulates and its potential contribution to the export of biogenic materials from the shelf and uppermost slope might play a significant role in hemipelagial fluxes off Mauritania.

An SDO/AIA-Observed Filament Eruption Triggered by a Lid-Removal Onset Mechanism

NASA Astrophysics Data System (ADS)

Sterling, A. C.; Moore, R. L.; Falconer, D. A.; Knox, J. M.

2013-12-01

An eruption of a solar filament often presages the onset of a more general solar eruption, often leading to a solar flare and coronal mass ejection (CME). Among the mechanisms suggested for triggering eruptions are flux cancelation, flux emergence, tether-cutting reconnection, and breakout reconnection. Here we present an example of a filament eruption due to a different trigger mechanism, which we call ``lid removal,'' whereby a magnetic structure overlying the filament is removed by a preceding adjacent eruption, rendering MHD unstable the magnetic system containing the filament and resulting in the subsequent eruption of the filament. This filament eruption occurred on 23 Jan 2013, and was well-seen in SDO/AIA 193 Ang images. Prior to its eruption the filament was at an approximately constant height above the solar surface for ~4 hours, before smoothly lifting off. Evidence for the overlying ``lid'' field was difficult to discern in 193 Ang images, but was apparent in hotter coronal images, such as SDO/AIA 335. Removal of the lid field was due to an eruption of that field visible in the hotter-corona images. In this way, the lid-removal filament-eruption mechanism is similar to recent observations of connected or cascading eruptions originating from magnetically-linked locations.

The effect of delays on filament oscillations and stability

NASA Astrophysics Data System (ADS)

van den Oord, G. H. J.; Schutgens, N. A. J.; Kuperus, M.

1998-11-01

We discuss the linear response of a filament to perturbations, taking the finite communication time between the filament and the photosphere into account. The finite communication time introduces delays in the system. Recently Schutgens (1997ab) investigated the solutions of the delay equation for vertical perturbations. In this paper we expand his analysis by considering also horizontal and coupled oscillations. The latter occur in asymmetric coronal fields. We also discuss the effect of Alfven wave emission on filament oscillations and show that wave emission is important for stabilizing filaments. We introduce a fairly straightforward method to study the solutions of delay equations as a function of the filament-photosphere communication time. A solution can be described by a linear combination of damped harmonic oscillations each characterized by a frequency, a damping/growth time and, accordingly, a quality factor. As a secondary result of our analysis we show that, within the context of line current models, Kippenhahn/Schlüter-type filament equilibria can never be stable in the horizontal and the vertical direction at the same time but we also demonstrate that Kuperus/Raadu-type equilibria can account for both an inverse or a normal polarity signature. The diagnostic value of our analysis for determining, e.g., the filament current from observations of oscillating filaments is discussed.

Mini-filament Eruptions Triggering Confined Solar Flares Observed by ONSET and SDO

NASA Astrophysics Data System (ADS)

Yang, Shuhong; Zhang, Jun

2018-06-01

Using the observations from the Optical and Near-infrared Solar Eruption Tracer (ONSET) and the Solar Dynamics Observatory (SDO), we study an M5.7 flare in AR 11476 on 2012 May 10 and a micro-flare in the quiet Sun on 2017 March 23. Before the onset of each flare, there is a reverse S-shaped filament above the polarity inversion line, then the filaments become unstable and begin to rise. The rising filaments gain the upper hand over the tension force of the dome-like overlying loops and thus successfully erupt outward. The footpoints of the reconnecting overlying loops successively brighten and are observed as two flare ribbons, while the newly formed low-lying loops appear as post-flare loops. These eruptions are similar to the classical model of successful filament eruptions associated with coronal mass ejections (CMEs). However, the erupting filaments in this study move along large-scale lines and eventually reach the remote solar surface; i.e., no filament material is ejected into the interplanetary space. Thus, both the flares are confined. These results reveal that some successful filament eruptions can trigger confined flares. Our observations also imply that this kind of filament eruption may be ubiquitous on the Sun, from active regions (ARs) with large flares to the quiet Sun with micro-flares.

PRE-ERUPTION OSCILLATIONS IN THIN AND LONG FEATURES IN A QUIESCENT FILAMENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joshi, Anand D.; Hanaoka, Yoichiro; Suematsu, Yoshinori

We investigate the eruption of a quiescent filament located close to an active region. Large-scale activation was observed in only half of the filament in the form of pre-eruption oscillations. Consequently only this half erupted nearly 30 hr after the oscillations commenced. Time-slice diagrams of 171 Å images from the Atmospheric Imaging Assembly were used to study the oscillations. These were observed in several thin and long features connecting the filament spine to the chromosphere below. This study traces the origin of such features and proposes their possible interpretation. Small-scale magnetic flux cancellation accompanied by a brightening was observed atmore » the footpoint of the features shortly before their appearance, in images recorded by the Helioseismic and Magnetic Imager. A slow rise of the filament was detected in addition to the oscillations, indicating a gradual loss of equilibrium. Our analysis indicates that a change in magnetic field connectivity between two neighbouring active regions and the quiescent filament resulted in a weakening of the overlying arcade of the filament, leading to its eruption. It is also suggested that the oscillating features are filament barbs, and the oscillations are a manifestation during the pre-eruption phase of the filaments.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, X. L.; Xue, Z. K.; Ma, L.

Kink instability is a possible mechanism for solar filament eruption. However, it is very difficult to directly measure the twist of the solar filament from observation. In this paper, we measured the twist of a solar filament by analyzing its leg rotation. An inverse S-shaped filament in the active region NOAA 11485 was observed by the Atmospheric Imaging Assembly of the Solar Dynamics Observatory on 2012 May 22. During its eruption, the leg of the filament exhibited a significant rotation motion. The 304 Å images were used to uncurl the circles, the centers of which are the axis of themore » filament's leg. The result shows that the leg of the filament rotated up to about 510° (about 2.83π) around the axis of the filament within 23 minutes. The maximal rotation speed reached 100 degrees/minute (about 379.9 km s{sup –1} at radius 18''), which is the fastest rotation speed reported. We also calculated the decay index along the polarity inversion line in this active region and found that the decline of the overlying field with height is not fast enough to trigger the torus instability. According to the kink instability condition, this indicates that the kink instability is the trigger mechanism for the solar filament eruption.« less

Investigation of the effect of resistivity on scrape off layer filaments using three-dimensional simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Easy, L., E-mail: le590@york.ac.uk; CCFE, Culham Science Centre, Abingdon OX14 3DB; Militello, F.

2016-01-15

The propagation of filaments in the Scrape Off Layer (SOL) of tokamaks largely determines the plasma profiles in the region. In a conduction limited SOL, parallel temperature gradients are expected, such that the resistance to parallel currents is greater at the target than further upstream. Since the perpendicular motion of an isolated filament is largely determined by balance of currents that flow through it, this may be expected to affect filament transport. 3D simulations have thus been used to study the influence of enhanced parallel resistivity on the dynamics of filaments. Filaments with the smallest perpendicular length scales, which weremore » inertially limited at low resistivity (meaning that polarization rather than parallel currents determines their radial velocities), were unaffected by resistivity. For larger filaments, faster velocities were produced at higher resistivities due to two mechanisms. First parallel currents were reduced and polarization currents were enhanced, meaning that the inertial regime extended to larger filaments, and second, a potential difference formed along the parallel direction so that higher potentials were produced in the region of the filament for the same amount of current to flow into the sheath. These results indicate that broader SOL profiles could be produced at higher resistivities.« less

Chandra and XMM-Newton Observations of the Abell 3395/Abell 3391 Intercluster Filament

NASA Astrophysics Data System (ADS)

Alvarez, Gabriella E.; Randall, Scott W.; Bourdin, Hervé; Jones, Christine; Holley-Bockelmann, Kelly

2018-05-01

We present Chandra and XMM-Newton X-ray observations of the Abell 3391/Abell 3395 intercluster filament. It has been suggested that the galaxy clusters Abell 3395, Abell 3391, and the galaxy group ESO-161 -IG 006 located between the two clusters, are in alignment along a large-scale intercluster filament. We find that the filament is aligned close to the plane of the sky, in contrast to previous results. We find a global projected filament temperature kT = {4.45}-0.55+0.89 keV, electron density {n}e={1.08}-0.05+0.06× {10}-4 cm‑3, and {M}gas}={2.7}-0.1+0.2 × {10}13 M ⊙. The thermodynamic properties of the filament are consistent with that of the intracluster medium (ICM) of Abell 3395 and Abell 3391, suggesting that the filament emission is dominated by ICM gas that has been tidally disrupted during an early stage merger between these two clusters. We present temperature, density, entropy, and abundance profiles across the filament. We find that the galaxy group ESO-161 may be undergoing ram-pressure-stripping in the low-density environment at or near the virial radius of both clusters, due to its rapid motion through the filament.

Flapping modes of three filaments placed side by side in a free stream

NASA Astrophysics Data System (ADS)

Tian, Fang-Bao; Luo, Haoxiang; Zhu, Luoding; Lu, Xi-Yun

2010-11-01

Flexible filaments flapping in a surrounding flow are useful models for understanding the flow-induced vibration and mimicking the schooling behavior of fish. In the present work, the coupled modes of three identical filaments in a side-by- side arrangement are studied using the linear stability analysis and also an immersed boundary--lattice Boltzmann method for low Reynolds numbers (Re on order of 100). The numerical simulations show that the system dynamics exhibits several patterns that depend on the spacing between the filaments. Among these patterns, three can be predicted by the linear analysis and have been reported before. These modes are: (1) the three filaments all flap in phase; (2) the two outer filaments are out of phase while the middle one is stable; (3) the two outer filaments are in phase while the middle one is out of phase. The simulations also identified two additional modes: (1) the outer two filaments are out of phase while the middle one flaps at a frequency reduced by half; (2) the outer two filaments are out of phase while the middle one flaps at a slightly different frequency. In addition to the vibratory modes, the drag force and the flapping amplitude are also computed, and the implication of the result will be discussed.

Kinetics of presynaptic filament assembly in the presence of single-stranded DNA binding protein and recombination mediator protein.

PubMed

Liu, Jie; Berger, Christopher L; Morrical, Scott W

2013-11-12

Enzymes of the RecA/Rad51 family catalyze DNA strand exchange reactions that are important for homologous recombination and for the accurate repair of DNA double-strand breaks. RecA/Rad51 recombinases are activated by their assembly into presynaptic filaments on single-stranded DNA (ssDNA), a process that is regulated by ssDNA binding protein (SSB) and mediator proteins. Mediator proteins stimulate strand exchange by accelerating the rate-limiting displacement of SSB from ssDNA by the incoming recombinase. The use of mediators is a highly conserved strategy in recombination, but the precise mechanism of mediator activity is unknown. In this study, the well-defined bacteriophage T4 recombination system (UvsX recombinase, Gp32 SSB, and UvsY mediator) is used to examine the kinetics of presynaptic filament assembly on native ssDNA in vitro. Results indicate that the ATP-dependent assembly of UvsX presynaptic filaments on Gp32-covered ssDNA is limited by a salt-sensitive nucleation step in the absence of mediator. Filament nucleation is selectively enhanced and rendered salt-resistant by mediator protein UvsY, which appears to stabilize a prenucleation complex. This mechanism potentially explains how UvsY promotes presynaptic filament assembly at physiologically relevant ionic strengths and Gp32 concentrations. Other data suggest that presynaptic filament assembly involves multiple nucleation events, resulting in many short UvsX-ssDNA filaments or clusters, which may be the relevant form for recombination in vivo. Together, these findings provide the first detailed kinetic model for presynaptic filament assembly involving all three major protein components (recombinase, mediator, and SSB) on native ssDNA.

Real-Time Imaging of Fluorescent Flagellar Filaments of Rhizobium lupini H13-3: Flagellar Rotation and pH-Induced Polymorphic Transitions

PubMed Central

Scharf, Birgit

2002-01-01

The soil bacterium Rhizobium lupini H13-3 has complex right-handed flagellar filaments with unusual ridged, grooved surfaces. Clockwise (CW) rotation propels the cells forward, and course changes (tumbling) result from changes in filament speed instead of the more common change in direction of rotation. In view of these novelties, fluorescence labeling was used to analyze the behavior of single flagellar filaments during swimming and tumbling, leading to a model for directional changes in R. lupini. Also, flagellar filaments were investigated for helical conformational changes, which have not been previously shown for complex filaments. During full-speed CW rotation, the flagellar filaments form a propulsive bundle that pushes the cell on a straight path. Tumbling is caused by asynchronous deceleration and stops of individual filaments, resulting in dissociation of the propulsive bundle. R. lupini tumbles were not accompanied by helical conformational changes as are tumbles in other organisms including enteric bacteria. However, when pH was experimentally changed, four different polymorphic forms were observed. At a physiological pH of 7, normal flagellar helices were characterized by a pitch angle of 30°, a pitch of 1.36 μm, and a helical diameter of 0.50 μm. As pH increased from 9 to 11, the helices transformed from normal to semicoiled to straight. As pH decreased from 5 to 3, the helices transformed from normal to curly to straight. Transient conformational changes were also noted at high viscosity, suggesting that the R. lupini flagellar filament may adapt to high loads in viscous environments (soil) by assuming hydrodynamically favorable conformations. PMID:12374832

Vorticity filaments in two-dimensional turbulence: creation, stability and effect

NASA Astrophysics Data System (ADS)

Kevlahan, N. K.-R.; Farge, M.

1997-09-01

Vorticity filaments are characteristic structures of two-dimensional turbulence. The formation, persistence and effect of vorticity filaments are examined using a high-resolution direct numerical simulation (DNS) of the merging of two positive Gaussian vortices pushed together by a weaker negative vortex. Many intense spiral vorticity filaments are created during this interaction and it is shown using a wavelet packet decomposition that, as has been suggested, the coherent vortex stabilizes the filaments. This result is confirmed by a linear stability analysis at the edge of the vortex and by a calculation of the straining induced by the spiral structure of the filament in the vortex core. The time-averaged energy spectra for simulations using hyper-viscosity and Newtonian viscosity have slopes of [minus sign]3 and [minus sign]4 respectively. Apart from a much higher effective Reynolds number (which accounts for the difference in energy spectra), the hyper-viscous simulation has the same dynamics as the Newtonian viscosity simulation. A wavelet packet decomposition of the hyper-viscous simulation reveals that after the merger the energy spectra of the filamentary and coherent parts of the vorticity field have slopes of [minus sign]2 and [minus sign]6 respectively. An asymptotic analysis and DNS for weak external strain shows that a circular filament at a distance R from the vortex centre always reduces the deformation of a Lamb's (Gaussian) vortex in the region r[gt-or-equal, slanted]R. In the region r

Mantle transition zone discontinuities beneath the Tien Shan

NASA Astrophysics Data System (ADS)

Yu, Youqiang; Zhao, Dapeng; Lei, Jianshe

2017-10-01

To better understand geodynamic processes of intracontinental mountain building, we conduct a systematic investigation of the mantle transition zone (MTZ) beneath the Tien Shan and its surrounding areas using a receiver function method under non-plane wave front assumption. The resulting apparent depths of the 410 km (d410) and 660 km (d660) discontinuities and the MTZ thickness display significant lateral variations. Both the central Tien Shan and the Pamir Plateau are characterized by a thick MTZ, which can be well explained by the existence of lithospheric segments resulted from possible break-off of the subducted slab or lithosphere delamination. A thin MTZ and an obviously depressed d410, which may be induced by asthenosphere upwelling associated with the dropping lithospheric segment, are revealed beneath the Kazakh Shield. Seismic evidence is obtained for the potential existence of lower mantle upwelling beneath the Tarim Basin based on the observed thin MTZ and relatively significant uplift of d660. The subduction of the Kazakh Shield and Tarim lithosphere driven by the India-Eurasia collision possibly plays an essential role in the formation and evolution of the Tien Shan orogenic belt, and the lower mantle upwelling revealed beneath the Tarim Basin may promote the uplift of the Tien Shan by softening the upper mantle.

Monsoon Variability In The Western Arabian Sea During Last 10,000 Years BP: A Planktic Foraminiferal Abundances And It's Stable Isotope Records

NASA Astrophysics Data System (ADS)

Singh, A. K.; Tiwari, M.; Sinha, D. K.; Ramesh, R.

2007-12-01

: The western Arabian Sea responds to the southwest monsoon winds by upwelling colder and nutrient rich waters from the deeper layers, causing a reduction in the sea surface temperature and enhanced biological productivity. A number of paleoclimatic studies have been carried out in this region to elucidate past monsoon variability (Sirocco et al., 1993; Gupta et al, 2003; Tiwari, 2005; Saher et.al.; 2007). Globigerina bulloides, a planktic foraminiferal species normally inhabiting surface ocean waters in temperate latitudes ( Be and Tolderlund , 1977) also becomes abundant at tropical latitudes upwelling occurs, and in these cases its abundance can exceed considerably. The conspicuous fluctuation in the abundance of Gg.bulloides during upwelling and non upwelling intervals is established through several studies ( Thiede and Junger, 1980, Gupta et al, 2003) This robust relation has been used as a proxy for wind velocity at several different times in the past in the Arabian Sea (Anderson et.al., 2002). A significant result from some of these centennially resolved Holocene records is declining abundance of Globigerina bulloides which is paralleled by reduced insolation record and this has been inferred as declining strength of Asian Monsoon. We are presenting here the data from the core SS4018 from near the Gulf of Aden, Western Arabian Sea taken at a water depth of 2830 m, precisely dated by the radiocarbon method using Accelerator Mass Spectrometry on planktonic foraminiferal separates. We have carried out the planktic foraminiferal census counts for each sample to know the relative abundance of key species. In addition to this, we have also employed multi- proxy approach such as oxygen and carbon isotopes of planktic foraminiferal tests, TOC, CaCO3 (%) to strengthen our interpretation and also to understand the relationships amongst the proxies themselves. Abundance of the key planktic foraminiferal species and other proxy records reveal at least 3 major climatic events (M-1, M-2 and M-3) during the last 10,000yrs. The earliest one (M-1) is a major decline in the upwelling intensity during 7.9.-5.6 kyBP. We have observed the lowest abundance of upwelling indicator species (UIS), it goes down from 70(%) to 30(%), mixed dweller (MD) and thermocline dweller (TD) species were showing their maximum abundance and at that time Organic carbon (OC) value revealed the lowest amount. Oxygen stable isotope records were also suggesting the same results. The second event at 5.5-2.2 kyBP (M-2) corresponds to average upwelling. We have observed the 2-3 high peaks of (UIS), on average UIS were showing around 50-55(%) of their abundance during this period, thus we have concluded the moderate intensity of SWM winds during M-2. The third event at last 2ky (M-3), decreasing trend in the strength of the SWM has been observed on the basis of sharp decline in the abundance of UIS and OC amount. For this interval, we have observed the increasing trend in the MD and TD planktic foraminiferal species.

Understanding nucleotide-regulated FtsZ filament dynamics and the monomer assembly switch with large-scale atomistic simulations.

PubMed

Ramírez-Aportela, Erney; López-Blanco, José Ramón; Andreu, José Manuel; Chacón, Pablo

2014-11-04

Bacterial cytoskeletal protein FtsZ assembles in a head-to-tail manner, forming dynamic filaments that are essential for cell division. Here, we study their dynamics using unbiased atomistic molecular simulations from representative filament crystal structures. In agreement with experimental data, we find different filament curvatures that are supported by a nucleotide-regulated hinge motion between consecutive FtsZ monomers. Whereas GTP-FtsZ filaments bend and twist in a preferred orientation, thereby burying the nucleotide, the differently curved GDP-FtsZ filaments exhibit a heterogeneous distribution of open and closed interfaces between monomers. We identify a coordinated Mg(2+) ion as the key structural element in closing the nucleotide site and stabilizing GTP filaments, whereas the loss of the contacts with loop T7 from the next monomer in GDP filaments leads to open interfaces that are more prone to depolymerization. We monitored the FtsZ monomer assembly switch, which involves opening/closing of the cleft between the C-terminal domain and the H7 helix, and observed the relaxation of isolated and filament minus-end monomers into the closed-cleft inactive conformation. This result validates the proposed switch between the low-affinity monomeric closed-cleft conformation and the active open-cleft FtsZ conformation within filaments. Finally, we observed how the antibiotic PC190723 suppresses the disassembly switch and allosterically induces closure of the intermonomer interfaces, thus stabilizing the filament. Our studies provide detailed structural and dynamic insights into modulation of both the intrinsic curvature of the FtsZ filaments and the molecular switch coupled to the high-affinity end-wise association of FtsZ monomers.

Yearly variation of bacterial production in the Arraial do Cabo protection area (Cabo Frio upwelling region): An evidence of anthropogenic pressure

PubMed Central

Coelho-Souza, Sérgio A.; Pereira, Gilberto C.; Coutinho, Ricardo; Guimarães, Jean R.D.

2013-01-01

Arraial do Cabo is where upwelling occurs more intensively on the Brazilian coast. Although it is a protection area it suffers anthropogenic pressure such as harbor activities and sporadic sewage emissions. Short-time studies showed a high variability of bacterial production (BP) in this region but none of them evaluated BP during long periods in a large spatial scale including stations under different natural (upwelling and cold fronts) and anthropogenic pressures. During 2006, we sampled surface waters 10 times (5 in upwelling and 5 in subsidence periods) in 8 stations and we measured BP, temperature as well as the concentrations of inorganic nutrients, pigments and particulate organic matter (POM). BP was up to 400 times higher when sewage emissions were observed visually and it had a positive correlation with ammonia concentrations. Therefore, in 2007, we did two samples (each during upwelling and subsidence periods) during sewage emissions in five stations under different anthropogenic pressure and we also measured particles abundance by flow cytometry. The 12 samples in the most impacted area confirmed that BP was highest when ammonia was higher than 2 μM, also reporting the highest concentrations of chlorophyll a and suspended particles. However, considering all measured variables, upwelling was the main disturbing factor but the pressure of fronts should not be neglected since it had consequences in the auto-heterotrophic coupling, increasing the concentrations of non fluorescent particles and POM. Stations clustered in function of natural and anthropogenic pressures degrees and both determined the temporal-spatial variability. PMID:24688533

Yearly variation of bacterial production in the Arraial do Cabo protection area (Cabo Frio upwelling region): an evidence of anthropogenic pressure.

PubMed

Coelho-Souza, Sérgio A; Pereira, Gilberto C; Coutinho, Ricardo; Guimarães, Jean R D

2013-12-01

Arraial do Cabo is where upwelling occurs more intensively on the Brazilian coast. Although it is a protection area it suffers anthropogenic pressure such as harbor activities and sporadic sewage emissions. Short-time studies showed a high variability of bacterial production (BP) in this region but none of them evaluated BP during long periods in a large spatial scale including stations under different natural (upwelling and cold fronts) and anthropogenic pressures. During 2006, we sampled surface waters 10 times (5 in upwelling and 5 in subsidence periods) in 8 stations and we measured BP, temperature as well as the concentrations of inorganic nutrients, pigments and particulate organic matter (POM). BP was up to 400 times higher when sewage emissions were observed visually and it had a positive correlation with ammonia concentrations. Therefore, in 2007, we did two samples (each during upwelling and subsidence periods) during sewage emissions in five stations under different anthropogenic pressure and we also measured particles abundance by flow cytometry. The 12 samples in the most impacted area confirmed that BP was highest when ammonia was higher than 2 μM, also reporting the highest concentrations of chlorophyll a and suspended particles. However, considering all measured variables, upwelling was the main disturbing factor but the pressure of fronts should not be neglected since it had consequences in the auto-heterotrophic coupling, increasing the concentrations of non fluorescent particles and POM. Stations clustered in function of natural and anthropogenic pressures degrees and both determined the temporal-spatial variability.

Bleaching susceptibility and recovery of Colombian Caribbean corals in response to water current exposure and seasonal upwelling.

PubMed

Bayraktarov, Elisa; Pizarro, Valeria; Eidens, Corvin; Wilke, Thomas; Wild, Christian

2013-01-01

Coral bleaching events are globally occurring more frequently and with higher intensity, mainly caused by increases in seawater temperature. In Tayrona National Natural Park (TNNP) in the Colombian Caribbean, local coral communities are subjected to seasonal wind-triggered upwelling events coinciding with stronger water currents depending on location. This natural phenomenon offers the unique opportunity to study potential water current-induced mitigation mechanisms of coral bleaching in an upwelling influenced region. Therefore, coral bleaching susceptibility and recovery patterns were compared during a moderate and a mild bleaching event in December 2010 and 2011, and at the end of the subsequent upwelling periods at a water current-exposed and -sheltered site of an exemplary bay using permanent transect and labeling tools. This was accompanied by parallel monitoring of key environmental variables. Findings revealed that in 2010 overall coral bleaching before upwelling was significantly higher at the sheltered (34%) compared to the exposed site (8%). Whereas 97% of all previously bleached corals at the water current-exposed site had recovered from bleaching by April 2011, only 77% recovered at the sheltered site, but 12% had died there. In December 2011, only mild bleaching (<10% at both sites) was observed, but corals recovered significantly at both sites in the course of upwelling. No differences in water temperatures between sites occurred, but water current exposure and turbidity were significantly higher at the exposed site, suggesting that these variables may be responsible for the observed site-specific mitigation of coral bleaching. This indicates the existence of local resilience patterns against coral bleaching in Caribbean reefs.

Bleaching Susceptibility and Recovery of Colombian Caribbean Corals in Response to Water Current Exposure and Seasonal Upwelling

PubMed Central

Bayraktarov, Elisa; Pizarro, Valeria; Eidens, Corvin; Wilke, Thomas; Wild, Christian

2013-01-01

Coral bleaching events are globally occurring more frequently and with higher intensity, mainly caused by increases in seawater temperature. In Tayrona National Natural Park (TNNP) in the Colombian Caribbean, local coral communities are subjected to seasonal wind-triggered upwelling events coinciding with stronger water currents depending on location. This natural phenomenon offers the unique opportunity to study potential water current-induced mitigation mechanisms of coral bleaching in an upwelling influenced region. Therefore, coral bleaching susceptibility and recovery patterns were compared during a moderate and a mild bleaching event in December 2010 and 2011, and at the end of the subsequent upwelling periods at a water current-exposed and -sheltered site of an exemplary bay using permanent transect and labeling tools. This was accompanied by parallel monitoring of key environmental variables. Findings revealed that in 2010 overall coral bleaching before upwelling was significantly higher at the sheltered (34%) compared to the exposed site (8%). Whereas 97% of all previously bleached corals at the water current-exposed site had recovered from bleaching by April 2011, only 77% recovered at the sheltered site, but 12% had died there. In December 2011, only mild bleaching (<10% at both sites) was observed, but corals recovered significantly at both sites in the course of upwelling. No differences in water temperatures between sites occurred, but water current exposure and turbidity were significantly higher at the exposed site, suggesting that these variables may be responsible for the observed site-specific mitigation of coral bleaching. This indicates the existence of local resilience patterns against coral bleaching in Caribbean reefs. PMID:24282551

Environmental Controls of Shellfish-Toxigenic Vibrio Bacteria in Oregon's Coasts and Estuaries

NASA Astrophysics Data System (ADS)

Gradoville, M. R.; Häse, C.; White, A. E.

2016-02-01

Vibrio species are a known and persistent concern for economically important aquaculture efforts. In Pacific Northwest shellfish hatcheries, vibriosis, caused by toxigenic Vibrio, has been responsible for major mortality events in recent decades — events that are often irregular and unpredictable. The success of shellfish hatcheries is critically linked to the chemical and biological composition of their seawater resources; thus, it is pertinent to understand the biogeochemical drivers of toxigenic Vibrio in their planktonic state. Recent evidence suggests that vibriosis outbreaks in Netarts Bay, Oregon may be related to wind-driven coastal upwelling, either through the advection of toxigenic Vibrio residing in upwelling source water, or through the creation of favorable growth conditions within the estuary. Here, we present data tracking shellfish-toxigenic Vibrio bacteria in Oregon estuaries and coastal waters through the 2015 upwelling season. Estuarine samples were collected from Netarts Bay and Yaquina Bay in May-October 2015 over a range of upwelling intensities, tidal heights, and biogeochemical conditions. Additionally, samples were collected at multiple depths from offshore coastal Oregon stations in order to test the hypothesis that toxigenic Vibrio reside in upwelling source waters. PCR-based methods were used to quantify the known shellfish pathogen V. coralliilyticus in estuary and seawater samples. These toxigenic Vibrio abundances were correlated to local environmental conditions, including temperature, salinity, carbonate chemistry, nutrients, and chlorophyll a concentrations, as well as coastal wind stress and upwelling intensity. Our analysis aims to define the environmental controls of toxigenic Vibrio in their free-living oceanic state, information that can be used to prevent future disease outbreaks in local shellfish hatcheries.

The Origin and Mantle Dynamics of Quaternary Intraplate Volcanism in Northeast China From Joint Inversion of Surface Wave and Body Wave

NASA Astrophysics Data System (ADS)

Guo, Zhen; Wang, Kai; Yang, Yingjie; Tang, Youcai; John Chen, Y.; Hung, Shu-Huei

2018-03-01

We present a 3-D model of NE China by joint inversion of body and surface waves. The joint inversion significantly improves the resolution at shallow depths compared with body wave tomography alone and provides seismic evidence for the origin of Quaternary volcanism in NE China. Our model reveals that the mantle upwelling beneath the Changbaishan volcano originates from the transition zone and extends up to 60 km, and spreads at the base of the lithosphere with the upwelling head 5 times wider than the raising tail in the lower upper mantle. However, low velocities beneath the Halaha and Abaga volcanoes in the Xingmeng belt are confined to depths shallower than 150 km, suggesting that magmatism in the Xingmeng belt is more likely caused by localized asthenospheric upwelling at shallow depths rather than from the common deep source. A small-scale sublithospheric mantle convection may control the spatial and temporal distribution of Quaternary magmatism in NE China; that is, the upwelling beneath the Changbaishan volcano triggers the downwelling beneath the southern Songliao basin, where the high velocity imaged extends to 300 km. The downwelling may further induce localized upwelling in the surrounding areas, such as the Halaha and Abaga volcanoes. Thanks to the joint constraints from both surface and body waves, we can estimate the dimension of the convection cell. The convection cell is located between 42°N and 45°N, spreads around 500 km in the W-E direction measured from the distance between centers of downwelling and upwelling, and extends to 300 km vertically.

Temporal variability of near-bottom dissolved oxygen during upwelling off central Oregon

NASA Astrophysics Data System (ADS)

Adams, Katherine A.; Barth, John A.; Chan, Francis

2013-10-01

In the productive central-Oregon coastal upwelling environment, wind-driven upwelling, tides, and topographic effects vary across the shelf, setting the stage for varied biogeochemical responses to physical drivers. Current, temperature, salinity, and dissolved oxygen (DO) measurements from three moorings deployed during the upwelling seasons of 2009-2011 off the central-Oregon coast are analyzed over three time bands (interannual, subtidal, tidal) to explore the relationship between mid (70 m) and inner-shelf (15 m) upwelling dynamics and the associated effect on DO. Topographic effects are observed in each time band due to the Heceta and Stonewall Bank complex. Seasonal cumulative hypoxia (DO < 1.4 mL L-1) calculations identify two regions, a well-ventilated inner shelf and a midshelf vulnerable to hypoxia (98 ± 15 days annually). On tidal timescales, along-shelf diurnal (K1) velocities are intensified over the Bank, 0.08 m s-1 compared with 0.03 m s-1 to the north. Interannual variability in the timing of spring and fall transitions, defined using glider-measured continental slope source water temperature, is observed on the midshelf. Interannual source water DO concentrations vary on the order of 0.1 mL L-1. Each spring and summer, DO decline rates are modulated by physical and biological processes. The net observed decrease is about 30% of the expected draw down due to water-column respiration. Physical processes initiate low-oxygen conditions on the shelf through coastal upwelling and subsequently prevent the system via advection and mixing from reaching the potential anoxic levels anticipated from respiration rates alone.

Laboratory measurements of radiance and reflectance spectra of dilute primary-treated sewage sludge

NASA Technical Reports Server (NTRS)

Usry, J. W.; Witte, W. G.; Whitlock, C. H.; Gurganus, E. A.

1977-01-01

The feasibility of remotely monitoring ocean dumping of waste products such as acid and sewage sludge is evaluated. The laboratory arrangement, solar simulator, and test results from three experiments conducted in the laboratory are described. Radiance and reflectance spectra are presented for primary-treated sewage sludge mixed with two types of base water. Results indicate that upwelled reflectance varies in a near-linear manner with concentration and that the sludge has a practically flat signal response between 420 and 970 nm. Well-defined upwelled reflectance spectra were obtained for the sewage-sludge mixtures at all wavelengths and concentrations. The spectral-reflectance values appeared to be influenced by the type of base water, but this influence was small, especially for the mixtures with low concentrations of sewage sludge.

Estrogen Modulation of MgATPase Activity of Nonmuscle Myosin-II-B Filaments

PubMed Central

Gorodeski, George I.

2008-01-01

The study tested the hypothesis that estrogen controls epithelial paracellular resistance through modulation of myosin. The objective was to understand how estrogen modulates non-muscle myosin-II-B (NMM-II-B), the main component of the cortical actomyosin in human epithelial cervical cells. Experiments used human cervical epithelial cells CaSki as a model, and end points were NMM-II-B phosphorylation, filamentation, and MgATPase activity. The results were as follows: 1) treatment with estrogen increased phosphorylation and MgATPase activity and decreased NMM-II-B filamentation; 2) estrogen effects could be blocked by antisense nucleotides for the estrogen receptor-α and by ICI-182,780, tamoxifen, and the casein kinase-II (CK2) inhibitor, 5,6-dichloro-1-β-(D)-ribofuranosylbenzimidazole and attenuated by AG1478 and PD98059 (inhibitors of epithelial growth factor receptor and ERK/MAPK) but not staurosporine [blocker of protein kinase C (PKC)]; 3) treatments with the PKC activator sn-1,2-di-octanoyl diglyceride induced biphasic effect on NMM-II-B MgATPase activity: an increase at 1 nM to 1 μM and a decrease in activity at more than 1 μM; 4) sn-1,2-dioctanoyl diglyceride also decreased NMM-II-B filamentation in a monophasic and saturable dose dependence (EC50 1–10 μM); 5) when coincubated directly with purified NMM-II-B filaments, both CK2 and PKC decreased filamentation and increased MgATPase activity; 6) assays done on disassembled NMM-II-B filaments showed MgATPase activity in filaments obtained from estrogen-treated cells but not estrogen-depleted cells; and 7) incubations in vitro with CK2, but not PKC, facilitated MgATPase activity, even in disassembled NMM-II-B filaments. The results suggest that estrogen, in an effect mediated by estrogen receptor-α and CK2 and involving the epithelial growth factor receptor and ERK/MAPK cascades, increases NMM-II-B MgATPase activity independent of NMM-II-B filamentation status. PMID:17023528

Pulling helices inside bacteria: imperfect helices and rings

NASA Astrophysics Data System (ADS)

Rutenberg, Andrew; Allard, Jun

2009-03-01

We study steady-state configurations of intrinsically-straight elastic filaments constrained within rod-shaped bacteria that have applied forces distributed along their length. Perfect steady-state helices result from axial or azimuthal forces applied at filament ends, however azimuthal forces are required for the small pitches observed for MreB filaments within bacteria. Helix-like configurations can result from distributed forces, including co-existence between rings and imperfect helices. Levels of expression and/or bundling of the polymeric protein could mediate this co-existence.

Pulling Helices inside Bacteria: Imperfect Helices and Rings

NASA Astrophysics Data System (ADS)

Allard, Jun F.; Rutenberg, Andrew D.

2009-04-01

We study steady-state configurations of intrinsically-straight elastic filaments constrained within rod-shaped bacteria that have applied forces distributed along their length. Perfect steady-state helices result from axial or azimuthal forces applied at filament ends, however azimuthal forces are required for the small pitches observed for MreB filaments within bacteria. Helix-like configurations can result from distributed forces, including coexistence between rings and imperfect helices. Levels of expression and/or bundling of the polymeric protein could mediate this coexistence.

Hygrothermomechanical evaluation of transverse filament tape epoxy/polyester fiberglass composites

NASA Technical Reports Server (NTRS)

Lark, R. F.; Chamis, C. C.

1984-01-01

Transverse filament tape (TFT) fiberglass/epoxy and TFT polyester composites intended for low cost wind turbine blade fabrication have been subjected to static and cyclic load behavior tests whose results are presently evaluated on the basis of an integrated hygrothermomechanical response theory. Laminate testing employed simulated filament winding procedures. The results obtained show that the predicted hygrothermomechanical environmental effects on TFT composites are in good agreement with measured data for various properties, including fatigue at different R-ratio values.

Modeling the filament winding process

NASA Technical Reports Server (NTRS)

Calius, E. P.; Springer, G. S.

1985-01-01

A model is presented which can be used to determine the appropriate values of the process variables for filament winding a cylinder. The model provides the cylinder temperature, viscosity, degree of cure, fiber position and fiber tension as functions of position and time during the filament winding and subsequent cure, and the residual stresses and strains within the cylinder during and after the cure. A computer code was developed to obtain quantitative results. Sample results are given which illustrate the information that can be generated with this code.

Invertebrate muscles: thin and thick filament structure; molecular basis of contraction and its regulation, catch and asynchronous muscle

PubMed Central

Hooper, Scott L.; Hobbs, Kevin H.; Thuma, Jeffrey B.

2008-01-01

This is the second in a series of canonical reviews on invertebrate muscle. We cover here thin and thick filament structure, the molecular basis of force generation and its regulation, and two special properties of some invertebrate muscle, catch and asynchronous muscle. Invertebrate thin filaments resemble vertebrate thin filaments, although helix structure and tropomyosin arrangement show small differences. Invertebrate thick filaments, alternatively, are very different from vertebrate striated thick filaments and show great variation within invertebrates. Part of this diversity stems from variation in paramyosin content, which is greatly increased in very large diameter invertebrate thick filaments. Other of it arises from relatively small changes in filament backbone structure, which results in filaments with grossly similar myosin head placements (rotating crowns of heads every 14.5 nm) but large changes in detail (distances between heads in azimuthal registration varying from three to thousands of crowns). The lever arm basis of force generation is common to both vetebrates and invertebrates, and in some invertebrates this process is understood on the near atomic level. Invertebrate actomyosin is both thin (tropomyosin:troponin) and thick (primarily via direct Ca++ binding to myosin) filament regulated, and most invertebrate muscles are dually regulated. These mechanisms are well understood on the molecular level, but the behavioral utility of dual regulation is less so. The phosphorylation state of the thick filament associated giant protein, twitchin, has been recently shown to be the molecular basis of catch. The molecular basis of the stretch activation underlying asynchronous muscle activity, however, remains unresolved. PMID:18616971

The Bacterial Actin MamK

PubMed Central

Ozyamak, Ertan; Kollman, Justin; Agard, David A.; Komeili, Arash

2013-01-01

It is now recognized that actin-like proteins are widespread in bacteria and, in contrast to eukaryotic actins, are highly diverse in sequence and function. The bacterial actin, MamK, represents a clade, primarily found in magnetotactic bacteria, that is involved in the proper organization of subcellular organelles, termed magnetosomes. We have previously shown that MamK from Magnetospirillum magneticum AMB-1 (AMB-1) forms dynamic filaments in vivo. To gain further insights into the molecular mechanisms that underlie MamK dynamics and function, we have now studied the in vitro properties of MamK. We demonstrate that MamK is an ATPase that, in the presence of ATP, assembles rapidly into filaments that disassemble once ATP is depleted. The mutation of a conserved active site residue (E143A) abolishes ATPase activity of MamK but not its ability to form filaments. Filament disassembly depends on both ATPase activity and potassium levels, the latter of which results in the organization of MamK filaments into bundles. These data are consistent with observations indicating that accessory factors are required to promote filament disassembly and for spatial organization of filaments in vivo. We also used cryo-electron microscopy to obtain a high resolution structure of MamK filaments. MamK adopts a two-stranded helical filament architecture, but unlike eukaryotic actin and other actin-like filaments, subunits in MamK strands are unstaggered giving rise to a unique filament architecture. Beyond extending our knowledge of the properties and function of MamK in magnetotactic bacteria, this study emphasizes the functional and structural diversity of bacterial actins in general. PMID:23204522

THE FORMATION AND MAGNETIC STRUCTURES OF ACTIVE-REGION FILAMENTS OBSERVED BY NVST, SDO, AND HINODE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, X. L.; Xue, Z. K.; Wang, J. C.

2015-08-15

To better understand the properties of solar active-region filaments, we present a detailed study on the formation and magnetic structures of two active-region filaments in active region NOAA 11884 during a period of four days. It is found that the shearing motion of the opposite magnetic polarities and the rotation of the small sunspots with negative polarity play an important role in the formation of two active-region filaments. During the formation of these two active-region filaments, one foot of the filaments was rooted in a small sunspot with negative polarity. The small sunspot rotated not only around another small sunspotmore » with negative polarity, but also around the center of its umbra. By analyzing the nonlinear force-free field extrapolation using the vector magnetic fields in the photosphere, twisted structures were found in the two active-region filaments prior to their eruptions. These results imply that the magnetic fields were dragged by the shearing motion between opposite magnetic polarities and became more horizontal. The sunspot rotation twisted the horizontal magnetic fields and finally formed the twisted active-region filaments.« less

Filament capturing with the multimaterial moment-of-fluid method*

DOE PAGES

Jemison, Matthew; Sussman, Mark; Shashkov, Mikhail

2015-01-15

A novel method for capturing two-dimensional, thin, under-resolved material configurations, known as “filaments,” is presented in the context of interface reconstruction. This technique uses a partitioning procedure to detect disconnected regions of material in the advective preimage of a cell (indicative of a filament) and makes use of the existing functionality of the Multimaterial Moment-of-Fluid interface reconstruction method to accurately capture the under-resolved feature, while exactly conserving volume. An algorithm for Adaptive Mesh Refinement in the presence of filaments is developed so that refinement is introduced only near the tips of filaments and where the Moment-of-Fluid reconstruction error is stillmore » large. Comparison to the standard Moment-of-Fluid method is made. As a result, it is demonstrated that using filament capturing at a given resolution yields gains in accuracy comparable to introducing an additional level of mesh refinement at significantly lower cost.« less

Different approaches to modeling the LANSCE H{sup −} ion source filament performance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Draganic, I. N., E-mail: draganic@lanl.gov; O’Hara, J. F.; Rybarcyk, L. J.

2016-02-15

An overview of different approaches to modeling of hot tungsten filament performance in the Los Alamos Neutron Science Center (LANSCE) H{sup −} surface converter ion source is presented. The most critical components in this negative ion source are two specially shaped wire filaments heated up to the working temperature range of 2600 K–2700 K during normal beam production. In order to prevent catastrophic filament failures (creation of hot spots, wire breaking, excessive filament deflection towards source body, etc.) and to improve understanding of the material erosion processes, we have simulated the filament performance using three different models: a semi-empirical model,more » a thermal finite-element analysis model, and an analytical model. Results of all three models were compared with data taken during LANSCE beam production. The models were used to support the recent successful transition from the beam pulse repetition rate of 60 Hz–120 Hz.« less

Preparation and Mechanical Properties of Fiber Reinforced PLA for 3D Printing Materials

NASA Astrophysics Data System (ADS)

Li, Xionghao; Ni, Zhongjin; Bai, Shuyang; Lou, Baiyang

2018-03-01

The cellulose prepared by means of TEMPO oxidation method and glass fibre was blended with PLA respectively, and were spun into enhanced PLA wires. This study evaluates the wire rods that is from extruder is suitable for FDM printing by various physical characterization tests to determine their feasibility as a 3D printing filament materials. The cellulose and glass fibre is blended with PLA and spun into the reinforced PLA filament respectively, which is applied to FDM printing technology. The results showed that the intensity of strike resistant of the reinforced PLA filament made from cellulose and PLA is 34% to 60% higher than the PLA filament, meanwhile the tensile strength is 43% to 52% higher than the pure one. The other enhanced PLA filament is 13% to 35% higher than the PLA filament in intensity of strike resistant, and the tensile strength is 54% to 61% higher than the pure one.

Different approaches to modeling the LANSCE H- ion source filament performance

NASA Astrophysics Data System (ADS)

Draganic, I. N.; O'Hara, J. F.; Rybarcyk, L. J.

2016-02-01

An overview of different approaches to modeling of hot tungsten filament performance in the Los Alamos Neutron Science Center (LANSCE) H- surface converter ion source is presented. The most critical components in this negative ion source are two specially shaped wire filaments heated up to the working temperature range of 2600 K-2700 K during normal beam production. In order to prevent catastrophic filament failures (creation of hot spots, wire breaking, excessive filament deflection towards source body, etc.) and to improve understanding of the material erosion processes, we have simulated the filament performance using three different models: a semi-empirical model, a thermal finite-element analysis model, and an analytical model. Results of all three models were compared with data taken during LANSCE beam production. The models were used to support the recent successful transition from the beam pulse repetition rate of 60 Hz-120 Hz.

Dynamics of Active Microfilaments

NASA Astrophysics Data System (ADS)

Ling, Feng; Guo, Hanliang; Kanso, Eva

2017-11-01

Soft elastic filaments are ubiquitous in natural and artificial systems at various length scales, and their interactions within and between filaments and their environments provide a persistent source of curiosity due to both the complexity of their behaviors and the relative mathematical simplicity of their structures. Specifically, a deeper understanding of the dynamic characteristics of microscopic filaments in viscous fluids is relevant to many biophysical and physiological processes. Here we start with the Cosserat model that allows all six possible modes of deformation for an elastic rod, and focus on the case of inextensible filaments submerged in viscous fluids by ignoring inertial effects and using local resistive force theory for fluid-filament interactions. We verify our simulations against special analytic solutions and present some results on the active internal control of cilia and flagella motion. We conclude by commenting on the utility of this general framework for studying other cellular and sub-cellular physical processes such as systems involving protein filaments.

Effects of basic calponin on the flexural mechanics and stability of F-actin.

PubMed

Jensen, Mikkel Herholdt; Watt, James; Hodgkinson, Julie L; Gallant, Cynthia; Appel, Sarah; El-Mezgueldi, Mohammed; Angelini, Thomas E; Morgan, Kathleen G; Lehman, William; Moore, Jeffrey R

2012-01-01

The cellular actin cytoskeleton plays a central role in the ability of cells to properly sense, propagate, and respond to external stresses and other mechanical stimuli. Calponin, an actin-binding protein found both in muscle and non-muscle cells, has been implicated in actin cytoskeletal organization and regulation. In this work, we studied the mechanical and structural interaction of actin with basic calponin, a differentiation marker in smooth muscle cells, on a single filament level. We imaged fluorescently labeled thermally fluctuating actin filaments and found that at moderate calponin binding densities, actin filaments were more flexible, evident as a reduction in persistence length from 8.0 to 5.8 μm. When calponin-decorated actin filaments were subjected to shear, we observed a marked reduction of filament lengths after decoration with calponin, which we argue was due to shear-induced filament rupture rather than depolymerization. This increased shear susceptibility was exacerbated with calponin concentration. Cryo-electron microscopy results confirmed previously published negative stain electron microscopy results and suggested alterations in actin involving actin subdomain 2. A weakening of F-actin intermolecular association is discussed as the underlying cause of the observed mechanical perturbations. Copyright © 2011 Wiley Periodicals, Inc.

Tropomyosin inhibits ADF/cofilin-dependent actin filament dynamics.

PubMed

Ono, Shoichiro; Ono, Kanako

2002-03-18

Tropomyosin binds to actin filaments and is implicated in stabilization of actin cytoskeleton. We examined biochemical and cell biological properties of Caenorhabditis elegans tropomyosin (CeTM) and obtained evidence that CeTM is antagonistic to ADF/cofilin-dependent actin filament dynamics. We purified CeTM, actin, and UNC-60B (a muscle-specific ADF/cofilin isoform), all of which are derived from C. elegans, and showed that CeTM and UNC-60B bound to F-actin in a mutually exclusive manner. CeTM inhibited UNC-60B-induced actin depolymerization and enhancement of actin polymerization. Within isolated native thin filaments, actin and CeTM were detected as major components, whereas UNC-60B was present at a trace amount. Purified UNC-60B was unable to interact with the native thin filaments unless CeTM and other associated proteins were removed by high-salt extraction. Purified CeTM was sufficient to restore the resistance of the salt-extracted filaments from UNC-60B. In muscle cells, CeTM and UNC-60B were localized in different patterns. Suppression of CeTM by RNA interference resulted in disorganized actin filaments and paralyzed worms in wild-type background. However, in an ADF/cofilin mutant background, suppression of CeTM did not worsen actin organization and worm motility. These results suggest that tropomyosin is a physiological inhibitor of ADF/cofilin-dependent actin dynamics.

Planck intermediate results: XXXIII. Signature of the magnetic field geometry of interstellar filaments in dust polarization maps

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ade, P. A. R.; Aghanim, N.; Alves, M. I. R.

2016-02-09

Planck observations at 353 GHz provide the first fully sampled maps of the polarized dust emission towards interstellar filaments and their backgrounds (i.e., the emission observed in the surroundings of the filaments). The data allow us to determine the intrinsic polarization properties of the filaments and therefore to provide insight into the structure of their magnetic field (B). In this paper, we present the polarization maps of three nearby (several parsecs long) star-forming filaments of moderate column density (N H about 10 22 cm -2): Musca, B211, and L1506. These three filaments are detected above the background in dust totalmore » and polarized emission. We use the spatial information to separate Stokes I, Q, and U of the filaments from those of their backgrounds, an essential step in measuring the intrinsic polarization fraction (p) and angle (ψ) of each emission component. We find that the polarization angles in the three filaments (ψ fil) are coherent along their lengths and not the same as in their backgrounds (ψ bg). The differences between ψ fil and ψ bg are 12° and 54° for Musca and L1506, respectively, and only 6° in the case of B211. These differences forMusca and L1506 are larger than the dispersions of ψ, both along the filaments and in their backgrounds. The observed changes of ψ are direct evidence of variations of the orientation of the plane of the sky (POS) projection of the magnetic field. As in previous studies, we find a decrease of several per cent in p with N H from the backgrounds to the crest of the filaments. We show that the bulk of the drop in p within the filaments cannot be explained by random fluctuations of the orientation of the magnetic field because they are too small (σ ψ< 10°). We recognize the degeneracy between the dust alignment efficiency (by, e.g., radiative torques) and the structure of the B-field in causing variations in p, but we argue that the decrease in p from the backgrounds to the filaments results in part from depolarization associated with the 3D structure of the B-field: both its orientation in the POS and with respect to the POS. We do not resolve the inner structure of the filaments, but at the smallest scales accessible with Planck (~0.2 pc), the observed changes of ψ and p hold information on the magnetic field structure within filaments. Finally, they show that both the mean field and its fluctuations in the filaments are different from those of their backgrounds, which points to a coupling between the matter and the B-field in the filament formation process.« less

Filament turnover tunes both force generation and dissipation to control long-range flows in a model actomyosin cortex

PubMed Central

McCall, Patrick M.; Gardel, Margaret L.; Munro, Edwin M.

2017-01-01

Actomyosin-based cortical flow is a fundamental engine for cellular morphogenesis. Cortical flows are generated by cross-linked networks of actin filaments and myosin motors, in which active stress produced by motor activity is opposed by passive resistance to network deformation. Continuous flow requires local remodeling through crosslink unbinding and and/or filament disassembly. But how local remodeling tunes stress production and dissipation, and how this in turn shapes long range flow, remains poorly understood. Here, we study a computational model for a cross-linked network with active motors based on minimal requirements for production and dissipation of contractile stress: Asymmetric filament compliance, spatial heterogeneity of motor activity, reversible cross-links and filament turnover. We characterize how the production and dissipation of network stress depend, individually, on cross-link dynamics and filament turnover, and how these dependencies combine to determine overall rates of cortical flow. Our analysis predicts that filament turnover is required to maintain active stress against external resistance and steady state flow in response to external stress. Steady state stress increases with filament lifetime up to a characteristic time τm, then decreases with lifetime above τm. Effective viscosity increases with filament lifetime up to a characteristic time τc, and then becomes independent of filament lifetime and sharply dependent on crosslink dynamics. These individual dependencies of active stress and effective viscosity define multiple regimes of steady state flow. In particular our model predicts that when filament lifetimes are shorter than both τc and τm, the dependencies of effective viscosity and steady state stress on filament turnover cancel one another, such that flow speed is insensitive to filament turnover, and shows a simple dependence on motor activity and crosslink dynamics. These results provide a framework for understanding how animal cells tune cortical flow through local control of network remodeling. PMID:29253848

Influence of El Niño and Indian Ocean Dipole on sea level variability in the Bay of Bengal

NASA Astrophysics Data System (ADS)

Sreenivas, P.; Gnanaseelan, C.; Prasad, K. V. S. R.

2012-01-01

Zonally oscillating seasonal equatorial winds generate pairs of upwelling and downwelling Kelvin waves in the Equatorial Indian Ocean, which then advance in to the coastal Bay of Bengal. The first (second) equatorial upwelling Kelvin wave has its origin in the western (eastern) basin, whereas the downwelling Kelvin waves originate in the central basin. The observed interannual variability of these Kelvin waves is highly governed by the associated zonal wind changes in the central and eastern equatorial Indian Ocean during the anomalous years. The second downwelling (upwelling) Kelvin wave is absent (weak) during El Niño (La Niña) years, whereas the second upwelling Kelvin wave strengthened during El Niño years both in the equatorial Indian Ocean and Bay of Bengal. The large scale off equatorial Rossby waves occasionally feedback the equatorial Kelvin waves, which then strengthen the Bay of Bengal coastal Kelvin waves. The coastal Kelvin waves and the associated radiated Rossby waves from east play a dominant role in the mesoscale eddy generation in Bay of Bengal. The analysis of cyclogenesis characteristics in the bay over the past 65 years revealed that the active (suppressed) phases of cyclogenesis are coinciding with the downwelling (upwelling) planetary waves which influence the cyclone heat potential by altering the thermocline depth.

Subarcsecond bright points and quasi-periodic upflows below a quiescent filament observed by IRIS

NASA Astrophysics Data System (ADS)

Li, T.; Zhang, J.

2016-05-01

Context. The new Interface Region Imaging Spectrograph (IRIS) mission provides high-resolution observations of UV spectra and slit-jaw images (SJIs). These data have become available for investigating the dynamic features in the transition region (TR) below the on-disk filaments. Aims: The driver of "counter-streaming" flows along the filament spine is still unknown yet. The magnetic structures and the upflows at the footpoints of the filaments and their relations with the filament mainbody have not been well understood. We study the dynamic evolution at the footpoints of filaments in order to find some clues for solving these questions. Methods: Using UV spectra and SJIs from the IRIS, along with coronal images and magnetograms from the Solar Dynamics Observatory (SDO), we present the new features in a quiescent filament channel: subarcsecond bright points (BPs) and quasi-periodic upflows. Results: The BPs in the TR have a spatial scale of about 350-580 km and lifetimes of more than several tens of minutes. They are located at stronger magnetic structures in the filament channel with a magnetic flux of about 1017-1018 Mx. Quasi-periodic brightenings and upflows are observed in the BPs, and the period is about 4-5 min. The BP and the associated jet-like upflow comprise a "tadpole-shaped" structure. The upflows move along bright filament threads, and their directions are almost parallel to the spine of the filament. The upflows initiated from the BPs with opposite polarity magnetic fields have opposite directions. The velocity of the upflows in the plane of sky is about 5-50 km s-1. The emission line of Si IV 1402.77 Å at the locations of upflows exhibits obvious blueshifts of about 5-30 km s-1, and the line profile is broadened with the width of more than 20 km s-1. Conclusions: The BPs seem to be the bases of filament threads, and the upflows are able to convey mass for the dynamic balance of the filament. The "counter-streaming" flows in previous observations may be caused by the propagation of bi-directional upflows initiated from opposite polarity magnetic fields. We suggest that quasi-periodic brightenings of BPs and quasi-periodic upflows result from small-scale oscillatory magnetic reconnections, which are modulated by solar p-mode waves.

Thermal activation energy for bidirectional movement of actin along bipolar tracks of myosin filaments.

PubMed

Okubo, Hiroyuki; Iwai, Masanori; Iwai, Sosuke; Chaen, Shigeru

2010-05-28

Previous in vitro motility assays using bipolar myosin thick filaments demonstrated that actin filaments were capable of moving in both directions along the myosin filament tracks. The movements; however, were slower in the direction leading away from the central bare zone than towards it. To understand the mechanism underlying these different direction-dependent motilities, we have examined the effects of temperature on the velocities of the bidirectional movements along reconstituted myosin filaments. Activation energies of the movements were determined by Arrhenius plots at high and low concentrations of ATP. As a result, the thermal activation energy of the movement away from the central bare zone was significantly higher than that of the movement toward the zone. Given that the backward movement away from the central bare zone would cause the myosin heads to be constrained and the stiffness of the cross-bridges to increase, these results suggest that elastic energy required for the cross-bridge transition is supplied by thermal fluctuations. Copyright (c) 2010 Elsevier Inc. All rights reserved.

Time Evolution of the Mantle Thermal Structure in the African Hemisphere Before and After the Formation of Pangea

NASA Astrophysics Data System (ADS)

Zhang, N.; Zhong, S.

2008-12-01

The present-day mantle structure is characterized by the African and Pacific superplumes surrounded by subduction slabs. This structure has been demonstrated to result from dynamic interaction between mantle convection and surface plate motion history in the last 120 Ma. With similar techniques, mantle structure has been constructed back to about 100 Ma ago. However, due to the lack in global plate motion reconstructions further back in time, mantle structure for earlier times is poorly understood, despite of their importance in understanding the continental tectonics and volcanisms. Zhong et al. (2007) suggested that the mantle structures alternate between spherical harmonic degrees-1 and -2 structures, modulated by supercontinent processes. In their model, a supercontinent forms in the hemisphere with cold downwellings, and after supercontinent formation, the cold downwellings are replaced with hot upwellings due to return flows associated with circum-supercontinent subduction. This model implies that the African superplume is younger than 330 Ma when Pangea was formed, which is supported by volcanic activities recorded on continents around Pangea time. By using paleomagnetic-geologically reconstructed continental motions between 500 and 200 Ma in a three-dimensional spherical models of mantle convection, this study, for the first time, investigates the time evolution of mantle structures in the African hemisphere associated with Pangea formation. We show that cold downwellings first develop in the mantle between the colliding Laurentia and Gondwana, and that the downwellings are then replaced by upwellings after the formation of Pangea and as circum-Pangea subduction is initiated, consistent with Zhong et al. (2007) and Li et al. (2008). We find that the return flows in response to the circum-Pangea subduction are responsible for the upwellings below Pangea. We also find that even if the mantle in the African hemisphere is initially occupied by hot upwellings, the cold downwellings associated with convergence between Laurentia and Gondwana would destroy the hot upwellings and cause the hemisphere to be cold. These results are insensitive to model parameters such as convective vigor, internal heating rate, and the plate motions in the oceanic hemisphere. We therefore suggest that the African superplume is younger than 330 Ma when Pangea was formed.

Jet-Suspended, Calcite-Ballasted Cyanobacterial Waterwarts in a Desert Spring

NASA Technical Reports Server (NTRS)

Pichel-Garcia, Ferran; Wade, Bman D.; Farmer, Jack D.

2002-01-01

We describe a population of colonial cyanobacteria (waterwarts) that develops as the dominant primary producer in a bottom-fed, warm spring in the Cuatro Cienegas karstic region of the Mexican Chihuahuan Desert. The centimeter-sized waterwarts were suspended within a central, conically shaped, 6-m deep well by upwelling waters. Waterwarts were built by an unicellular cyanobacterium and supported a community of epiphytic filamentous cyanobacteria and diatoms but were free of heterotrophic bacteria inside. Sequence analysis of genes revealed that this cyanobacterium is only distantly related to several strains of other unicellular teria Cyanothece, Waterwarts contained orderly arrangements of mineral made up of microcrystalline low-magnesium calcite with high levels of strontium and sulfur. Waterwarts were 95.9% (v/v) glycan, 2.8% cells, and 1.3% mineral grains and had a buoyant density of 1.034 kg/L. An analysis of the hydrological properties of the spring well and the waterwarts demonstrated that both large colony size and the presence of controlled amounts of mineral ballast are required to prevent the population from being washed out of the well. The unique hydrological characteristics of the spring have likely selected for both traits. The mechanisms by which controlled nucleation of extracellular calcite is achieved remain to be explored.

Feasibility of quasi-random band model in evaluating atmospheric radiance

NASA Technical Reports Server (NTRS)

Tiwari, S. N.; Mirakhur, N.

1980-01-01

The use of the quasi-random band model in evaluating upwelling atmospheric radiation is investigated. The spectral transmittance and total band adsorptance are evaluated for selected molecular bands by using the line by line model, quasi-random band model, exponential sum fit method, and empirical correlations, and these are compared with the available experimental results. The atmospheric transmittance and upwelling radiance were calculated by using the line by line and quasi random band models and were compared with the results of an existing program called LOWTRAN. The results obtained by the exponential sum fit and empirical relations were not in good agreement with experimental results and their use cannot be justified for atmospheric studies. The line by line model was found to be the best model for atmospheric applications, but it is not practical because of high computational costs. The results of the quasi random band model compare well with the line by line and experimental results. The use of the quasi random band model is recommended for evaluation of the atmospheric radiation.

Formation of a solar Hα filament from orphan penumbrae

NASA Astrophysics Data System (ADS)

Buehler, D.; Lagg, A.; van Noort, M.; Solanki, S. K.

2016-05-01

Aims: The formation and evolution of an Hα filament in active region (AR) 10953 is described. Methods: Observations from the Solar Optical Telescope (SOT) aboard the Hinode satellite starting from UT 18:09 on 27th April 2007 until UT 06:08 on 1st May 2007 were analysed. 20 scans of the 6302 Å Fe I line pair recorded by SOT/SP were inverted using the spatially coupled version of the SPINOR code. The inversions were analysed together with co-spatial SOT/BFI G-band and Ca II H and SOT/NFI Hα observations. Results: Following the disappearance of an initial Hα filament aligned along the polarity inversion line (PIL) of the AR, a new Hα filament formed in its place some 20 h later, which remained stable for, at least, another 1.5 days. The creation of the new Hα filament was driven by the ascent of horizontal magnetic fields from the photosphere into the chromosphere at three separate locations along the PIL. The magnetic fields at two of these locations were situated directly underneath the initial Hα filament and formed orphan penumbrae already aligned along the Hα filament channel. The 700 G orphan penumbrae were stable and trapped in the photosphere until the disappearance of the overlying initial Hα filament, after which they started to ascend into the chromosphere at 10 ± 5 m/s. Each ascent was associated with a simultaneous magnetic flux reduction of up to 50% in the photosphere. The ascended orphan penumbrae formed dark seed structures in Hα in parallel with the PIL, which elongated and merged to form an Hα filament. The filament channel featured horizontal magnetic fields of on average 260 G at log (τ) = -2 suspended above the nearly field-free lower photosphere. The fields took on an overall inverse configuration at log (τ) = -2 suggesting a flux rope topology for the new Hα filament. The destruction of the initial Hα filament was likely caused by the flux emergence at the third location along the PIL. Conclusions: We present a new interpretation of the Hα filament formation in AR 10953 whereby the mainly horizontal fields of orphan penumbrae, aligned along the Hα filament channel, ascend into the chromosphere, forming seed fragments for a new, second Hα filament. The orphan penumbral fields ascend into the chromosphere ~9-24 h before the Hα filament is fully formed.

Computational studies on scattering of radio frequency waves by density filaments in fusion plasmas

NASA Astrophysics Data System (ADS)

Ioannidis, Zisis C.; Ram, Abhay K.; Hizanidis, Kyriakos; Tigelis, Ioannis G.

2017-10-01

In modern magnetic fusion devices, such as tokamaks and stellarators, radio frequency (RF) waves are commonly used for plasma heating and current profile control, as well as for certain diagnostics. The frequencies of the RF waves range from ion cyclotron frequency to the electron cyclotron frequency. The RF waves are launched from structures, like waveguides and current straps, placed near the wall in a very low density, tenuous plasma region of a fusion device. The RF electromagnetic fields have to propagate through this scrape-off layer before coupling power to the core of the plasma. The scrape-off layer is characterized by turbulent plasmas fluctuations and by blobs and filaments. The variations in the edge density due to these fluctuations and filaments can affect the propagation characteristics of the RF waves—changes in density leading to regions with differing plasma permittivity. Analytical full-wave theories have shown that scattering by blobs and filaments can alter the RF power flow into the core of the plasma in a variety of ways, such as through reflection, refraction, diffraction, and shadowing [see, for example, Ram and Hizanidis, Phys. Plasmas 23, 022504 (2016), and references therein]. There are changes in the wave vectors and the distribution of power-scattering leading to coupling of the incident RF wave to other plasma waves, side-scattering, surface waves, and fragmentation of the Poynting flux in the direction towards the core. However, these theoretical models are somewhat idealized. In particular, it is assumed that there is step-function discontinuity in the density between the plasma inside the filament and the background plasma. In this paper, results from numerical simulations of RF scattering by filaments using a commercial full-wave code are described. The filaments are taken to be cylindrical with the axis of the cylinder aligned along the direction of the ambient magnetic field. The plasma inside and outside the filament is assumed to be cold. There are three primary objectives of these studies. The first objective is to validate the numerical simulations by comparing with the analytical results for the same plasma description—a step-function discontinuity in density. A detailed comparison of the Poynting flux shows that numerical simulations lead to the same results as those from the theoretical model. The second objective is to extend the simulations to take into account a smooth transition in density from the background plasma to the interior of the filament. The ensuing comparison shows that the deviations from the results of the theoretical model are quite small. The third objective is to consider the scattering process for situations well beyond a reasonable theoretical analysis. This includes scattering off multiple filaments with different densities and sizes. Simulations for these complex arrangements of filaments show that, in spite of the obvious limitations, the essential physics of RF scattering is captured by the analytical theory for a single filament.

A new insight of the northern filaments of Centaurus A

NASA Astrophysics Data System (ADS)

Salomé, Q.; Salomé, P.; Combes, F.; Hamer, S.

2016-12-01

We present new APEX observations of the CO(2-1) in the northern filaments of Centaurus A, at the intersection between the radio jet and the northern H num{1} shell. The CO emission was compared with archival FUV (GALEX), FIR (Herschel) and VLT/MUSE data. The molecular gas mass of the filaments is (8.2± 0.5)× 10^7: M_⊙, distributed in two filamentary structures. We found a surprisingly strong molecular filament that lies outside the H num{1} gas. The filaments are mostly molecular, suggesting a scenario where the radio-jet triggers the atomic-to-molecular phase transition. We then compared the CO masses with the SFR estimates and found very long depletion times (˜ 75: Gyr over the whole filaments), in agreement with the results of te{SalomeQ_2016}. Analysis of optical excitation lines indicates that the filaments are mostly excited by the AGN or shocks. Comparison with the Hα and H num{1} emission suggests that the three gas phases are spatially and kinematically linked. In particular, the CO emission shows the same velocity gradient as the H num{1} gas.

Evaluation of GOES encoder lamps

NASA Technical Reports Server (NTRS)

Viehmann, W.; Helmold, N.

1983-01-01

Aging characteristics and life expectancies of flight quality, tungsten filament, encoder lamps are similar to those of 'commercial' grade gas filled lamps of similar construction, filament material and filament temperature. The aging and final failure by filament burnout are caused by single crystal growth over large portions of the filament with the concomitant development of facets and notches resulting in reduction of cross section and mechanical weakening of the filament. The life expectancy of presently produced lamps is about one year at their nominal operating voltage of five volts dc. At 4.5 volts, it is about two years. These life times are considerably shorter, and the degradation rates of lamp current and light flux are considerably higher, than were observed in the laboratory and in orbit on lamps of the same type manufactured more than a decade ago. It is speculated that the filaments of these earlier lamps contained a crystallization retarding dopant, possibly thorium oxide. To obtain the desired life expectancy of or = to four years in present lamps, operating voltages of or = to four volts dc would be required.

Prokaryotic cytoskeletons: protein filaments organizing small cells.

PubMed

Wagstaff, James; Löwe, Jan

2018-04-01

Most, if not all, bacterial and archaeal cells contain at least one protein filament system. Although these filament systems in some cases form structures that are very similar to eukaryotic cytoskeletons, the term 'prokaryotic cytoskeletons' is used to refer to many different kinds of protein filaments. Cytoskeletons achieve their functions through polymerization of protein monomers and the resulting ability to access length scales larger than the size of the monomer. Prokaryotic cytoskeletons are involved in many fundamental aspects of prokaryotic cell biology and have important roles in cell shape determination, cell division and nonchromosomal DNA segregation. Some of the filament-forming proteins have been classified into a small number of conserved protein families, for example, the almost ubiquitous tubulin and actin superfamilies. To understand what makes filaments special and how the cytoskeletons they form enable cells to perform essential functions, the structure and function of cytoskeletal molecules and their filaments have been investigated in diverse bacteria and archaea. In this Review, we bring these data together to highlight the diverse ways that linear protein polymers can be used to organize other molecules and structures in bacteria and archaea.

Bacillus subtilis MreB orthologs self-organize into filamentous structures underneath the cell membrane in a heterologous cell system.

PubMed

Dempwolff, Felix; Reimold, Christian; Reth, Michael; Graumann, Peter L

2011-01-01

Actin-like bacterial cytoskeletal element MreB has been shown to be essential for the maintenance of rod cell shape in many bacteria. MreB forms rapidly remodelling helical filaments underneath the cell membrane in Bacillus subtilis and in other bacterial cells, and co-localizes with its two paralogs, Mbl and MreBH. We show that MreB localizes as dynamic bundles of filaments underneath the cell membrane in Drosophila S2 Schneider cells, which become highly stable when the ATPase motif in MreB is modified. In agreement with ATP-dependent filament formation, the depletion of ATP in the cells lead to rapid dissociation of MreB filaments. Extended induction of MreB resulted in the formation of membrane protrusions, showing that like actin, MreB can exert force against the cell membrane. Mbl also formed membrane associated filaments, while MreBH formed filaments within the cytosol. When co-expressed, MreB, Mbl and MreBH built up mixed filaments underneath the cell membrane. Membrane protein RodZ localized to endosomes in S2 cells, but localized to the cell membrane when co-expressed with Mbl, showing that bacterial MreB/Mbl structures can recruit a protein to the cell membrane. Thus, MreB paralogs form a self-organizing and dynamic filamentous scaffold underneath the membrane that is able to recruit other proteins to the cell surface.

A catalytic oligomeric motor that walks along a filament track

NASA Astrophysics Data System (ADS)

Huang, Mu-Jie; Kapral, Raymond

2015-06-01

Most biological motors in the cell execute chemically powered conformational changes as they walk on biopolymer filaments in order to carry out directed transport functions. Synthetic motors that operate in a similar manner are being studied since they have the potential to perform similar tasks in a variety of applications. In this paper, a synthetic nanomotor that moves along a filament track, without invoking motor conformational changes, is constructed and its properties are studied in detail. The motor is an oligomer comprising three linked beads with specific binding properties. The filament track is a stiff polymer chain, also described by a linear chain of linked coarse-grained molecular groups modeled as beads. Reactions on the filament that are catalyzed by a motor bead and use fuel in the environment, in conjunction within the binding affinities of the motor beads to the filament beads, lead to directed motion. The system operates out of equilibrium due to the state of the filament and supply of fuel. The motor, filament, and surrounding medium are all described at microscopic level that permits a full analysis of the motor motion. A stochastic model that captures the main trends seen in the simulations is also presented. The results of this study point to some of the key features that could be used to construct nanomotors that undergo biased walks powered by chemical reactions on filaments.

Cortactin binding to F-actin revealed by electron microscopy and 3D reconstruction.

PubMed

Pant, Kiran; Chereau, David; Hatch, Victoria; Dominguez, Roberto; Lehman, William

2006-06-16

Cortactin and WASP activate Arp2/3-mediated actin filament nucleation and branching. However, different mechanisms underlie activation by the two proteins, which rely on distinct actin-binding modules and modes of binding to actin filaments. It is generally thought that cortactin binds to "mother" actin filaments, while WASP donates actin monomers to Arp2/3-generated "daughter" filament branches. Interestingly, cortactin also binds WASP in addition to F-actin and the Arp2/3 complex. However, the structural basis for the role of cortactin in filament branching remains unknown, making interpretation difficult. Here, electron microscopy and 3D reconstruction were carried out on F-actin decorated with the actin-binding repeating domain of cortactin, revealing conspicuous density on F-actin attributable to cortactin that is located on a consensus-binding site on subdomain-1 of actin subunits. Strikingly, the binding of cortactin widens the gap between the two long-pitch filament strands. Although other proteins have been found to alter the structure of the filament, the cortactin-induced conformational change appears unique. The results are consistent with a mechanism whereby alterations of the F-actin structure may facilitate recruitment of the Arp2/3 complex to the "mother" filament in the cortex of cells. In addition, cortactin may act as a structural adapter protein, stabilizing nascent filament branches while mediating the simultaneous recruitment of Arp2/3 and WASP.

Emissions of Ultrafine Particles and Volatile Organic Compounds from Commercially Available Desktop Three-Dimensional Printers with Multiple Filaments.

PubMed

Azimi, Parham; Zhao, Dan; Pouzet, Claire; Crain, Neil E; Stephens, Brent

2016-02-02

Previous research has shown that desktop 3D printers can emit large numbers of ultrafine particles (UFPs, particles less than 100 nm) and some hazardous volatile organic compounds (VOCs) during printing, although very few filament and 3D printer combinations have been tested to date. Here we quantify emissions of UFPs and speciated VOCs from five commercially available filament extrusion desktop 3D printers utilizing up to nine different filaments by controlled experiments in a test chamber. Median estimates of time-varying UFP emission rates ranged from ∼10(8) to ∼10(11) min(-1) across all tested combinations, varying primarily by filament material and, to a lesser extent, bed temperature. The individual VOCs emitted in the largest quantities included caprolactam from nylon-based and imitation wood and brick filaments (ranging from ∼2 to ∼180 μg/min), styrene from acrylonitrile butadiene styrene (ABS) and high-impact polystyrene (HIPS) filaments (ranging from ∼10 to ∼110 μg/min), and lactide from polylactic acid (PLA) filaments (ranging from ∼4 to ∼5 μg/min). Results from a screening analysis of potential exposure to these products in a typical small office environment suggest caution should be used when operating many of the printer and filament combinations in poorly ventilated spaces or without the aid of combined gas and particle filtration systems.

A catalytic oligomeric motor that walks along a filament track

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Mu-Jie, E-mail: mjhuang@chem.utoronto.ca; Kapral, Raymond, E-mail: rkapral@chem.utoronto.ca

Most biological motors in the cell execute chemically powered conformational changes as they walk on biopolymer filaments in order to carry out directed transport functions. Synthetic motors that operate in a similar manner are being studied since they have the potential to perform similar tasks in a variety of applications. In this paper, a synthetic nanomotor that moves along a filament track, without invoking motor conformational changes, is constructed and its properties are studied in detail. The motor is an oligomer comprising three linked beads with specific binding properties. The filament track is a stiff polymer chain, also described bymore » a linear chain of linked coarse-grained molecular groups modeled as beads. Reactions on the filament that are catalyzed by a motor bead and use fuel in the environment, in conjunction within the binding affinities of the motor beads to the filament beads, lead to directed motion. The system operates out of equilibrium due to the state of the filament and supply of fuel. The motor, filament, and surrounding medium are all described at microscopic level that permits a full analysis of the motor motion. A stochastic model that captures the main trends seen in the simulations is also presented. The results of this study point to some of the key features that could be used to construct nanomotors that undergo biased walks powered by chemical reactions on filaments.« less

Upwelling and downwelling induced by mesoscale circulation in the DeSoto Canyon region

NASA Astrophysics Data System (ADS)

Nguyen, T. T.; Chassignet, E.; Morey, S. L.; Dukhovskoy, D. S.

2014-12-01

Ocean dynamics are complex over irregular topography areas, and the northeastern Gulf of Mexico, specifically the DeSoto Canyon region, is a challenge for modelers and oceanographers. Vertical movement of waters, especially upwelling, is observed to take place over the canyon's head and along the coast; however, it is not well understood. We focus on upwelling/downwelling processes induced by the Loop Current and its associated eddy field using multi-decadal Hybrid Coordinate Ocean Model simulations. The Loop Current, part of the Gulf Stream, can develop northward into the Gulf through the Yucatan Channel and exit through the Florida Straits. It can reach the continental slope of the study domain and directly depress the isopycnals. Cyclonic eddies in front of the Loop Current also induce upwelling underneath. On the other hand, the Loop Current sometimes impinges on the West Florida Shelf and generates a high pressure disturbance, which travels northward along the shelf into the study region. Consequently, large-scale downwelling occurs across the continental slopes. Our analysis of sea surface height shows that the Loop Current pressure disturbance tends to propagate along the shallow isobaths of 100 to 300 m in the topographic wave direction from south of the West Florida Shelf to the Mississippi Delta. In addition, after shedding a large anticyclonic eddy, the Loop Current retracts southward and can touch the southeastern corner of the West Florida Shelf. This can result in a higher pressure disturbance, and therefore stronger large-scale downwelling in the DeSoto Canyon region.

Off-great-circle paths in transequatorial propagation: 1. Discrete and diffuse types

NASA Astrophysics Data System (ADS)

Tsunoda, Roland T.; Maruyama, Takashi; Tsugawa, Takuya; Yokoyama, Tatsuhiro; Ishii, Mamoru; Nguyen, Trang T.; Ogawa, Tadahiko; Nishioka, Michi

2016-11-01

There is mounting evidence that plasma structure in nighttime equatorial F layer evolves from large-scale wave structure (LSWS) in the bottomside F layer. This process cannot be ignored because equatorial plasma bubbles (EPBs) arise from large-amplitude LSWS; and, because intense radiowave scintillations are associated with EPBs, understanding the LSWS-to-EPB process is a crucial step toward reliable Space Weather Forecasting. In this regard, the transequatorial propagation (TEP) experiment appears to be the most useful among available research instruments. After a lapse of 30 years, the TEP experiment has been resurrected; a goal of this research is to understand TEP measurements well enough so that they can be used to diagnose the LSWS-to-EPB process. Toward this end, new results are presented in two companion papers. Herein (P1), off-great-circle (OGC) propagation paths are shown to consist of two types, discrete and diffuse. The new findings include the following: (1) a generalized multireflection model that can explain most of the observed properties; (2) the discrete type is supported by multireflections from an unstructured upwelling, (3) the diffuse type is supported by reflections from plasma structure in EPBs; and (4) the observed east-west (EW) asymmetry can be explained in terms of a distorted upwelling or plasma structure along the west wall of an upwelling. In Paper 2 (P2), a second form of observed EW asymmetry is explained in terms of plasma structure, which is not aligned with the geomagnetic field. The findings strongly confirm a close relationship between upwellings, ESF patches, and OGC paths.

A Novel Method of Measuring Upwelling Radiance in the Hydrographic Sub-Hull

NASA Astrophysics Data System (ADS)

Rüssmeier, N.; Zielinski, O.

2016-01-01

In this study we present a new method useful in collecting upwelling radiance (Lu) from a platform submerged in a hydrographic sub-hull or moon pool of a research vessel. The information analyzed here was obtained during a field campaign in the Northwestern European shelf seas aboard the new research vessel SONNE. As the platform was located at the center of the ship, there is minimal effect from pitch and roll which is known to influence upwelling radiance observations. A comparison of the measurements from this platform with a free falling hyperspectral profiler was performed to determine the degree of uncertainty that results from ship shadow. For given Lu(λ) in situ data we observed ±33% intensity deviations compared to profiling measurements that can be attributed to instrument shading during moon pool installation and environmental perturbations. Furthermore Lu(λ) in situ spectra variations were observed at lower wavelengths, therefore a form fitting algorithm was adapted to receive corresponding depths with identical spectral form from Lu(z, λ) profiler casts. During an east to west transect in North Sea with a schedule speed up to 12 knots in situ radiance reflectance rrs(7, λ) measurements at 7 meter depth were performed with this novel radiometer setup. In spite of any restrictions originating from the sub-hull installation, water masses mixing zone from CDOM dominated coastal waters in the Skagerrak Strait towards the open North Sea were successfully derived thus offering an underway applicable upwelling radiance sensing not suffering from sun glint or other typical restrictions of above water radiometer installations.

Evidence of bottom-up limitations in nearshore marine systems based on otolith proxies of fish growth

USGS Publications Warehouse

von Biela, Vanessa R.; Kruse, Gordon H.; Mueter, Franz J.; Black, Bryan A.; Douglas, David C.; Helser, Thomas E.; Zimmerman, Christian E.

2015-01-01

Fish otolith growth increments were used as indices of annual production at nine nearshore sites within the Alaska Coastal Current (downwelling region) and California Current (upwelling region) systems (~36–60°N). Black rockfish (Sebastes melanops) and kelp greenling (Hexagrammos decagrammus) were identified as useful indicators in pelagic and benthic nearshore food webs, respectively. To examine the support for bottom-up limitations, common oceanographic indices of production [sea surface temperature (SST), upwelling, and chlorophyll-a concentration] during summer (April–September) were compared to spatial and temporal differences in fish growth using linear mixed models. The relationship between pelagic black rockfish growth and SST was positive in the cooler Alaska Coastal Current and negative in the warmer California Current. These contrasting growth responses to SST among current systems are consistent with the optimal stability window hypothesis in which pelagic production is maximized at intermediate levels of water column stability. Increased growth rates of black rockfish were associated with higher chlorophyll concentrations in the California Current only, but black rockfish growth was unrelated to the upwelling index in either current system. Benthic kelp greenling growth rates were positively associated with warmer temperatures and relaxation of downwelling (upwelling index near zero) in the Alaska Coastal Current, while none of the oceanographic indices were related to their growth in the California Current. Overall, our results are consistent with bottom-up forcing of nearshore marine ecosystems—light and nutrients constrain primary production in pelagic food webs, and temperature constrains benthic food webs.

A Multi-spacecraft View of a Giant Filament Eruption during 2009 September 26/27

NASA Astrophysics Data System (ADS)

Gosain, Sanjay; Schmieder, Brigitte; Artzner, Guy; Bogachev, Sergei; Török, Tibor

2012-12-01

We analyze multi-spacecraft observations of a giant filament eruption that occurred during 2009 September 26 and 27. The filament eruption was associated with a relatively slow coronal mass ejection. The filament consisted of a large and a small part, and both parts erupted nearly simultaneously. Here we focus on the eruption associated with the larger part of the filament. The STEREO satellites were separated by about 117° during this event, so we additionally used SoHO/EIT and CORONAS/TESIS observations as a third eye (Earth view) to aid our measurements. We measure the plane-of-sky trajectory of the filament as seen from STEREO-A and TESIS viewpoints. Using a simple trigonometric relation, we then use these measurements to estimate the true direction of propagation of the filament which allows us to derive the true R/R ⊙-time profile of the filament apex. Furthermore, we develop a new tomographic method that can potentially provide a more robust three-dimensional (3D) reconstruction by exploiting multiple simultaneous views. We apply this method also to investigate the 3D evolution of the top part of filament. We expect this method to be useful when SDO and STEREO observations are combined. We then analyze the kinematics of the eruptive filament during its rapid acceleration phase by fitting different functional forms to the height-time data derived from the two methods. We find that for both methods an exponential function fits the rise profile of the filament slightly better than parabolic or cubic functions. Finally, we confront these results with the predictions of theoretical eruption models.

A Census of Large-scale (≥10 PC), Velocity-coherent, Dense Filaments in the Northern Galactic Plane: Automated Identification Using Minimum Spanning Tree

NASA Astrophysics Data System (ADS)

Wang, Ke; Testi, Leonardo; Burkert, Andreas; Walmsley, C. Malcolm; Beuther, Henrik; Henning, Thomas

2016-09-01

Large-scale gaseous filaments with lengths up to the order of 100 pc are on the upper end of the filamentary hierarchy of the Galactic interstellar medium (ISM). Their association with respect to the Galactic structure and their role in Galactic star formation are of great interest from both an observational and theoretical point of view. Previous “by-eye” searches, combined together, have started to uncover the Galactic distribution of large filaments, yet inherent bias and small sample size limit conclusive statistical results from being drawn. Here, we present (1) a new, automated method for identifying large-scale velocity-coherent dense filaments, and (2) the first statistics and the Galactic distribution of these filaments. We use a customized minimum spanning tree algorithm to identify filaments by connecting voxels in the position-position-velocity space, using the Bolocam Galactic Plane Survey spectroscopic catalog. In the range of 7\\buildrel{\\circ}\\over{.} 5≤slant l≤slant 194^\\circ , we have identified 54 large-scale filaments and derived mass (˜ {10}3{--}{10}5 {M}⊙ ), length (10-276 pc), linear mass density (54-8625 {M}⊙ pc-1), aspect ratio, linearity, velocity gradient, temperature, fragmentation, Galactic location, and orientation angle. The filaments concentrate along major spiral arms. They are widely distributed across the Galactic disk, with 50% located within ±20 pc from the Galactic mid-plane and 27% run in the center of spiral arms. An order of 1% of the molecular ISM is confined in large filaments. Massive star formation is more favorable in large filaments compared to elsewhere. This is the first comprehensive catalog of large filaments that can be useful for a quantitative comparison with spiral structures and numerical simulations.

Myosin binding protein-C activates thin filaments and inhibits thick filaments in heart muscle cells

PubMed Central

Kampourakis, Thomas; Yan, Ziqian; Gautel, Mathias; Sun, Yin-Biao; Irving, Malcolm

2014-01-01

Myosin binding protein-C (MyBP-C) is a key regulatory protein in heart muscle, and mutations in the MYBPC3 gene are frequently associated with cardiomyopathy. However, the mechanism of action of MyBP-C remains poorly understood, and both activating and inhibitory effects of MyBP-C on contractility have been reported. To clarify the function of the regulatory N-terminal domains of MyBP-C, we determined their effects on the structure of thick (myosin-containing) and thin (actin-containing) filaments in intact sarcomeres of heart muscle. We used fluorescent probes on troponin C in the thin filaments and on myosin regulatory light chain in the thick filaments to monitor structural changes associated with activation of demembranated trabeculae from rat ventricle by the C1mC2 region of rat MyBP-C. C1mC2 induced larger structural changes in thin filaments than calcium activation, and these were still present when active force was blocked with blebbistatin, showing that C1mC2 directly activates the thin filaments. In contrast, structural changes in thick filaments induced by C1mC2 were smaller than those associated with calcium activation and were abolished or reversed by blebbistatin. Low concentrations of C1mC2 did not affect resting force but increased calcium sensitivity and reduced cooperativity of force and structural changes in both thin and thick filaments. These results show that the N-terminal region of MyBP-C stabilizes the ON state of thin filaments and the OFF state of thick filaments and lead to a novel hypothesis for the physiological role of MyBP-C in the regulation of cardiac contractility. PMID:25512492

Myosin binding protein-C activates thin filaments and inhibits thick filaments in heart muscle cells.

PubMed

Kampourakis, Thomas; Yan, Ziqian; Gautel, Mathias; Sun, Yin-Biao; Irving, Malcolm

2014-12-30

Myosin binding protein-C (MyBP-C) is a key regulatory protein in heart muscle, and mutations in the MYBPC3 gene are frequently associated with cardiomyopathy. However, the mechanism of action of MyBP-C remains poorly understood, and both activating and inhibitory effects of MyBP-C on contractility have been reported. To clarify the function of the regulatory N-terminal domains of MyBP-C, we determined their effects on the structure of thick (myosin-containing) and thin (actin-containing) filaments in intact sarcomeres of heart muscle. We used fluorescent probes on troponin C in the thin filaments and on myosin regulatory light chain in the thick filaments to monitor structural changes associated with activation of demembranated trabeculae from rat ventricle by the C1mC2 region of rat MyBP-C. C1mC2 induced larger structural changes in thin filaments than calcium activation, and these were still present when active force was blocked with blebbistatin, showing that C1mC2 directly activates the thin filaments. In contrast, structural changes in thick filaments induced by C1mC2 were smaller than those associated with calcium activation and were abolished or reversed by blebbistatin. Low concentrations of C1mC2 did not affect resting force but increased calcium sensitivity and reduced cooperativity of force and structural changes in both thin and thick filaments. These results show that the N-terminal region of MyBP-C stabilizes the ON state of thin filaments and the OFF state of thick filaments and lead to a novel hypothesis for the physiological role of MyBP-C in the regulation of cardiac contractility.

Compressive force generation by a bundle of living biofilaments

NASA Astrophysics Data System (ADS)

Ramachandran, Sanoop; Ryckaert, Jean-Paul

2013-08-01

To study the compressional forces exerted by a bundle of living stiff filaments pressing on a surface, akin to the case of an actin bundle in filopodia structures, we have performed particulate molecular dynamics simulations of a grafted bundle of parallel living (self-assembling) filaments, in chemical equilibrium with a solution of their constitutive monomers. Equilibrium is established as these filaments, grafted at one end to a wall of the simulation box, grow at their chemically active free end, and encounter the opposite confining wall of the simulation box. Further growth of filaments requires bending and thus energy, which automatically limit the populations of longer filaments. The resulting filament sizes distribution and the force exerted by the bundle on the obstacle are analyzed for different grafting densities and different sub- or supercritical conditions, these properties being compared with the predictions of the corresponding ideal confined bundle model. In this analysis, non-ideal effects due to interactions between filaments and confinement effects are singled out. For all state points considered at the same temperature and at the same gap width between the two surfaces, the force per filament exerted on the opposite wall appears to be a function of a rescaled free monomer density hat{ρ }_1^eff. This quantity can be estimated directly from the characteristic length of the exponential filament size distribution P observed in the size domain where these grafted filaments are not in direct contact with the wall. We also analyze the dynamics of the filament contour length fluctuations in terms of effective polymerization (U) and depolymerization (W) rates, where again it is possible to disentangle non-ideal and confinement effects.

Modification of the kinetic parameters of aldolase on binding to the actin-containing filaments of skeletal muscle.

PubMed Central

Walsh, T P; Clarke, F M; Masters, C J

1977-01-01

The kinetic parameters of fructose bisphosphate aldolase (EC 4.1.2.13) were shown to be modified on binding of the enzyme to the actin-containing filaments of skeletal muscle. Although binding to F-actin or F-actin-tropomyosin filaments results in relative minor changes in kinetic properties, binding to F-actin-tropomyosin-troponin filaments produces major alterations in the kinetic parameters, and, in addition, renders them Ca2+-sensitive. These observations may be relevant to an understanding of the function of this enzyme within the muscle fibre. PMID:889571

Upwelling-Induced Primary Productivity in Coastal Waters of the Black Sea: Impact on Algorithms for Remote Sensing

NASA Technical Reports Server (NTRS)

Goldman, Joel C.; Brink, Kenneth K.; Gawarkiewicz, Glen; Sosik, Heidi M.

1997-01-01

This research program was a collaborative effort to investigate the impact of rapid changes in the water column during coastal upwelling, on biological and optical properties. These properties are important for constructing region or event-specific algorithms for remote sensing of pigment concentration and primary productivity and for comparing these algorithms with those used for the development of large scale maps from ocean color. We successfully achieved the primary objective of this research project which was to study in situ the dynamics of rapid spatial and temporal changes in properties of the water column during, coastal upwelling off the Crimean Coast in the Black Sea. The work was a collaborative effort between a group of biological and physical oceanographers from the Woods Hole Oceanographic Institution and from two oceanographic research institutions in the Crimea, Ukraine, located near the study site, the Marine Hydrophysical Institute (MHI) and the Institute of Biology of the Southern Seas (IBSS). The site was an ideal experimental model, both from a technical and economic standpoint, because of the predictable summer upwelling that occurs in the region and because of the availability of both a ship on call and laboratory and remote sensing facilities at the nearby marine institutes. We used a combination of shipboard measurements and remote sensing to investigate the physical evolution of rapid upwelling events and their impact on photoplankton and water column optical properties. The field work involved a two day cruise for mooring, deployment and a three day baseline survey cruise, followed by an eleven day primary cruise during, a summer upwelling event (anticipated by monitoring local winds and tracked by remote sensing imaging). An MHI ship was outfitted and used for these purposes.

Scaling Coastal Ecosystems to Oceanographic and Climatic Drivers: Making Sense of Community Variation on Rocky Shores Using the Comparative-Experimental Approach in Upwelling and Downwelling Systems

NASA Astrophysics Data System (ADS)

Menge, B. A.; Gouhier, T.; Chan, F.; Hacker, S.; Menge, D.; Nielsen, K. J.

2016-02-01

Ecology focuses increasingly on the issue of matching spatial and temporal scales responsible for ecosystem pattern and dynamics. Benthic coastal communities traditionally were studied at local scales using mostly short-term research, while environmental (oceanographic, climatic) drivers were investigated at large scales (e.g., regional to oceanic, mostly offshore) using combined snapshot and monitoring (time series) research. The comparative-experimental approach combines local-scale studies at multiple sites spanning large-scale environmental gradients in combination with monitoring of inner shelf oceanographic conditions including upwelling/downwelling wind forcing and their consequences (e.g., temperature), and inputs of subsidies (larvae, phytoplankton, detritus). Temporal scale varies depending on the questions, but can extend from years to decades. We discuss two examples of rocky intertidal ecosystem dynamics, one at a regional scale (California Current System, CCS) and one at an interhemispheric scale. In the upwelling-dominated CCS, 52% and 32% of the variance in local community structure (functional group abundances at 13 sites across 725 km) was explained by external factors (ecological subsidies, oceanographic conditions, geographic location), and species interactions, respectively. The interhemispheric study tested the intermittent upwelling hypothesis (IUH), which predicts that key ecological processes will vary unimodally along a persistent downwelling to persistent upwelling gradient. Using 14-22 sites, unimodal relationships between ecological subsidies (phytoplankton, prey recruitment), prey responses (barnacle colonization, mussel growth) and species interactions (competition rate, predation rate and effect) and the Bakun upwelling index calculated at each site accounted for 50% of the variance. Hence, external factors can account for about half of locally-expressed community structure and dynamics.

Suzaku observations of the outskirts of the galaxy cluster Abell 3395, including a filament toward Abell 3391

NASA Astrophysics Data System (ADS)

Sugawara, Yuuki; Takizawa, Motokazu; Itahana, Madoka; Akamatsu, Hiroki; Fujita, Yutaka; Ohashi, Takaya; Ishisaki, Yoshitaka

2017-12-01

The results of Suzaku observations of the outskirts of Abell 3395, including a large-scale structure filament toward Abell 3391, are presented. We measured temperature and abundance distributions from the southern outskirt of A 3395 to the north at the virial radius, where a filament structure has been found in the former X-ray and Sunyaev-Zel'dovich (SZ) effect observations between A 3391 and A 3395. The overall temperature structure is consistent with the universal profile proposed by Okabe, N., et al. 2014, PASJ, 66, 99 for relaxed clusters, except for the filament region. A hint of intracluster medium heating is found between the two clusters, which might be due to their interaction in the early phase of a cluster merger. Although we obtained a relatively low metal abundance of Z=0.169^{+0.164+0.009+0.018}_{-0.150-0.004-0.015} solar, where the first, second, and third errors are statistical, cosmic X-ray background systematic, and non-X-ray background systematic, respectively, at the virial radius in the filament, our results are still consistent with previous results for other clusters (Z ˜ 0.3 solar) within errors. Therefore, our results are also consistent with the early enrichment scenario. We estimated Compton y parameters only from X-ray results in the region between A 3391 and A 3395 assuming a simple geometry. They are smaller than the previous SZ results with the Planck satellite. The difference could be attributed to a more elaborate geometry such as a filament inclined to the line-of-sight direction, or underestimation of the X-ray temperature because of the unresolved multi-temperature structures or undetected hot X-ray emission of the shock-heated gas.

Interfering with the wake of cylinder by flexible filaments

NASA Astrophysics Data System (ADS)

Pinelli, Alfredo; Omidyeganeh, Mohammad

2015-11-01

This work is the very first attempt to understand and optimize the configuration of flexible filaments placed on the lee side of a bluff body to manipulate flow transitions and bifurcations. It is found that the presence of a sparse set of flexible filaments on the lee side of a cylinder can interfere with the 2D-3D transition process resulting in elongation of recirculation bubble, inhibition of higher order unstable modes, and narrowing the global energy content about a particular shedding frequency. Filaments become effective when spacing between them is smaller than the dominant unstable mode at each particular Reynolds number, i.e. A and B modes. In another study, by a particular arrangement the reconfigured filaments can reduce pressure fluctuations in the wake and drop lift flluctuations significantly (~= 80 %).

Force measurements by micromanipulation of a single actin filament by glass needles

NASA Astrophysics Data System (ADS)

Kishino, Akiyoshi; Yanagida, Toshio

1988-07-01

Single actin filaments (~7nm in diameter) labelled with fluorescent phalloidin can be clearly seen by video-fluorescence microscopy1. This technique has been used to observe motions of single filaments in solution and in several in vitro movement assays1-5. In a further development of the technique, we report here a method to catch and manipulate a single actin filament (F-actin) by glass microneedles under conditions in which external force on the filament can be applied and measured. Using this method, we directly measured the tensile strength of a filament (the force necessary to break the bond between two actin monomers) and the force required for a filament to be moved by myosin or its proteolytic fragment bound to a glass surface in the presence of ATP. The first result shows that the tensile strength of the F-actin-phalloidin complex is comparable with the average force exerted on a single thin filament in muscle fibres during isometric contraction. This force is increased only slightly by tropomyosin. The second measurement shows that the myosin head (subfragment-1) can produce the same ATP-dependent force as intact myosin. The magnitude of this force is comparable with that produced by each head of myosin in muscle during isometric contraction.

Measuring the regulation of keratin filament network dynamics

PubMed Central

Moch, Marcin; Herberich, Gerlind; Aach, Til; Leube, Rudolf E.; Windoffer, Reinhard

2013-01-01

The organization of the keratin intermediate filament cytoskeleton is closely linked to epithelial function. To study keratin network plasticity and its regulation at different levels, tools are needed to localize and measure local network dynamics. In this paper, we present image analysis methods designed to determine the speed and direction of keratin filament motion and to identify locations of keratin filament polymerization and depolymerization at subcellular resolution. Using these methods, we have analyzed time-lapse fluorescence recordings of fluorescent keratin 13 in human vulva carcinoma-derived A431 cells. The fluorescent keratins integrated into the endogenous keratin cytoskeleton, and thereby served as reliable markers of keratin dynamics. We found that increased times after seeding correlated with down-regulation of inward-directed keratin filament movement. Bulk flow analyses further revealed that keratin filament polymerization in the cell periphery and keratin depolymerization in the more central cytoplasm were both reduced. Treating these cells and other human keratinocyte-derived cells with EGF reversed all these processes within a few minutes, coinciding with increased keratin phosphorylation. These results highlight the value of the newly developed tools for identifying modulators of keratin filament network dynamics and characterizing their mode of action, which, in turn, contributes to understanding the close link between keratin filament network plasticity and epithelial physiology. PMID:23757496

Striation and convection in penumbral filaments

NASA Astrophysics Data System (ADS)

Spruit, H. C.; Scharmer, G. B.; Löfdahl, M. G.

2010-10-01

Observations with the 1-m Swedish Solar Telescope of the flows seen in penumbral filaments are presented. Time sequences of bright filaments show overturning motions strikingly similar to those seen along the walls of small isolated structures in the active regions. The filaments show outward propagating striations with inclination angles suggesting that they are aligned with the local magnetic field. We interpret it as the equivalent of the striations seen in the walls of small isolated magnetic structures. Their origin is then a corrugation of the boundary between an overturning convective flow inside the filament and the magnetic field wrapping around it. The outward propagation is a combination of a pattern motion due to the downflow observed along the sides of bright filaments, and the Evershed flow. The observed short wavelength of the striation argues against the existence of a dynamically significant horizontal field inside the bright filaments. Its intensity contrast is explained by the same physical effect that causes the dark cores of filaments, light bridges and “canals”. In this way striation represents an important clue to the physics of penumbral structure and its relation with other magnetic structures on the solar surface. We put this in perspective with results from the recent 3-D radiative hydrodynamic simulations. 4 movies are only available in electronic form at http://www.aanda.org

Rapid response to coastal upwelling in a semienclosed bay

NASA Astrophysics Data System (ADS)

Gilcoto, Miguel; Largier, John L.; Barton, Eric D.; Piedracoba, Silvia; Torres, Ricardo; Graña, Rocío.; Alonso-Pérez, Fernando; Villacieros-Robineau, Nicolás.; de la Granda, Francisco

2017-03-01

Bays/estuaries forced by local wind show bidirectional exchange flow. When forced by remote wind, they exhibit unidirectional flow adjustment to coastal sea level. Acoustic Doppler Current Profiler observations over 1 year show that the Ria de Vigo (Iberian Upwelling) responds to coastal wind events with bidirectional exchange flow. The duration of the upwelling and downwelling events, estimated from the current variability, was 3.3 days and 2.6 days, respectively. Vectorial correlations reveal a rapid response to upwelling/downwelling, in which currents lag local wind by <6 h and remote wind by <14 h, less than the Ekman spinup (17.8 h). This rapidity arises from the ria's narrowness (nonrotational local response), equatorward orientation (additive remote and local wind responses), depth greater than the Ekman depth (penetration of shelf circulation into the interior), and vertical stratification (shear reinforcing shelf circulation). Similar rapid responses are expected in other narrow bays where local and remote winds act together and stratification enhances bidirectional flow.

Sensitivity studies with a coupled ice-ocean model of the marginal ice zone

NASA Technical Reports Server (NTRS)

Roed, L. P.

1983-01-01

An analytical coupled ice-ocean model is considered which is forced by a specified wind stress acting on the open ocean as well as the ice. The analysis supports the conjecture that the upwelling dynamics at ice edges can be understood by means of a simple analytical model. In similarity with coastal problems it is shown that the ice edge upwelling is determined by the net mass flux at the boundaries of the considered region. The model is used to study the sensitivity of the upwelling dynamics in the marginal ice zone to variation in the controlling parameters. These parameters consist of combinations of the drag coefficients used in the parameterization of the stresses on the three interfaces atmosphere-ice, atmosphere-ocean, and ice-ocean. The response is shown to be sensitive to variations in these parameters in that one set of parameters may give upwelling while a slightly different set of parameters may give downwelling.

Comparing Derived and Actual Upwelling Longwave Measurements at the CERES Ocean Validation Experiment (COVE)

NASA Astrophysics Data System (ADS)

Fabbri, B. E.; Schuster, G. L.; Denn, F. M.; Arduini, R. F.; Madigan, J. J.

2017-12-01

One of the parameters measured from the Clouds and the Earth's Radiant Energy System (CERES) satellite is Earth emitted or longwave (LW) radiation. One validation site to compare this quantity is the CERES Ocean Validation Experiment (COVE), located at Chesapeake Light Station, approximately 25 kilometers east of Virginia Beach, Virginia (coordinates: 36.90N, 75.71W). However, the upwelling measurement is complicated due to the Light Station tower being in the LW instruments field of view. A negative outcome of the tower being in the field of view is a tower radiating effect, especially noticeable on clear, sunny days. During these days, the tower tends to heat up and radiate extra heat energy that is measured by the LW instrument. To understand the extent of the problem, we derive upwelling longwave measurements at the surface using sea surface temperature, air temperature, and dewpoint to compare with the actual longwave measurement made with an Eppley Laboratory pyrgeometer. The data used in this study is over a four-year period (2009-2012). One result using only nighttime data (range: 15.0 =< sa <= 55.0) shows the relative error between actual versus derived being low. The resultant statistics produced a mean, median, standard deviation and standard error to be -0.378, -0.14, 1.906 and 0.005 respectively. This low error is not too surprising since there is no solar insolation creating the tower radiating effect. Other results comparing the diurnal scope are analyzed and presented.

Opening Pandora's Box: The impact of open system modeling on interpretations of anoxia

NASA Astrophysics Data System (ADS)

Hotinski, Roberta M.; Kump, Lee R.; Najjar, Raymond G.

2000-06-01

The geologic record preserves evidence that vast regions of ancient oceans were once anoxic, with oxygen levels too low to sustain animal life. Because anoxic conditions have been postulated to foster deposition of petroleum source rocks and have been implicated as a kill mechanism in extinction events, the genesis of such anoxia has been an area of intense study. Most previous models of ocean oxygen cycling proposed, however, have either been qualitative or used closed-system approaches. We reexamine the question of anoxia in open-system box models in order to test the applicability of closed-system results over long timescales and find that open and closed-system modeling results may differ significantly on both short and long timescales. We also compare a scenario with basinwide diffuse upwelling (a three-box model) to a model with upwelling concentrated in the Southern Ocean (a four-box model). While a three-box modeling approach shows that only changes in high-latitude convective mixing rate and character of deepwater sources are likely to cause anoxia, four-box model experiments indicate that slowing of thermohaline circulation, a reduction in wind-driven upwelling, and changes in high-latitude export production may also cause dysoxia or anoxia in part of the deep ocean on long timescales. These results suggest that box models must capture the open-system and vertically stratified nature of the ocean to allow meaningful interpretations of long-lived episodes of anoxia.

Helicity within the vortex filament model.

PubMed

Hänninen, R; Hietala, N; Salman, H

2016-11-24

Kinetic helicity is one of the invariants of the Euler equations that is associated with the topology of vortex lines within the fluid. In superfluids, the vorticity is concentrated along vortex filaments. In this setting, helicity would be expected to acquire its simplest form. However, the lack of a core structure for vortex filaments appears to result in a helicity that does not retain its key attribute as a quadratic invariant. By defining a spanwise vector to the vortex through the use of a Seifert framing, we are able to introduce twist and henceforth recover the key properties of helicity. We present several examples for calculating internal twist to illustrate why the centreline helicity alone will lead to ambiguous results if a twist contribution is not introduced. Our choice of the spanwise vector can be expressed in terms of the tangential component of velocity along the filament. Since the tangential velocity does not alter the configuration of the vortex at later times, we are able to recover a similar equation for the internal twist angle to that of classical vortex tubes. Our results allow us to explain how a quasi-classical limit of helicity emerges from helicity considerations for individual superfluid vortex filaments.

Helicity within the vortex filament model

PubMed Central

Hänninen, R.; Hietala, N.; Salman, H.

2016-01-01

Kinetic helicity is one of the invariants of the Euler equations that is associated with the topology of vortex lines within the fluid. In superfluids, the vorticity is concentrated along vortex filaments. In this setting, helicity would be expected to acquire its simplest form. However, the lack of a core structure for vortex filaments appears to result in a helicity that does not retain its key attribute as a quadratic invariant. By defining a spanwise vector to the vortex through the use of a Seifert framing, we are able to introduce twist and henceforth recover the key properties of helicity. We present several examples for calculating internal twist to illustrate why the centreline helicity alone will lead to ambiguous results if a twist contribution is not introduced. Our choice of the spanwise vector can be expressed in terms of the tangential component of velocity along the filament. Since the tangential velocity does not alter the configuration of the vortex at later times, we are able to recover a similar equation for the internal twist angle to that of classical vortex tubes. Our results allow us to explain how a quasi-classical limit of helicity emerges from helicity considerations for individual superfluid vortex filaments. PMID:27883029

Carbonate fabrics in the modern microbialites of Pavilion Lake: two suites of microfabrics that reflect variation in microbial community morphology, growth habit, and lithification.

PubMed

Theisen, C Harwood; Sumner, D Y; Mackey, T J; Lim, D S S; Brady, A L; Slater, G F

2015-07-01

Modern microbialites in Pavilion Lake, BC, provide an analog for ancient non-stromatolitic microbialites that formed from in situ mineralization. Because Pavilion microbialites are mineralizing under the influence of microbial communities, they provide insights into how biological processes influence microbialite microfabrics and mesostructures. Hemispherical nodules and micrite-microbial crusts are two mesostructures within Pavilion microbialites that are directly associated with photosynthetic communities. Both filamentous cyanobacteria in hemispherical nodules and branching filamentous green algae in micrite-microbial crusts were associated with calcite precipitation at microbialite surfaces and with characteristic microfabrics in the lithified microbialite. Hemispherical nodules formed at microbialite surfaces when calcite precipitated around filamentous cyanobacteria with a radial growth habit. The radial filament pattern was preserved within the microbialite to varying degrees. Some subsurface nodules contained well-defined filaments, whereas others contained only dispersed organic inclusions. Variation in filament preservation is interpreted to reflect differences in timing and amount of carbonate precipitation relative to heterotrophic decay, with more defined filaments reflecting greater lithification prior to degradation than more diffuse filaments. Micrite-microbial crusts produce the second suite of microfabrics and form in association with filamentous green algae oriented perpendicular to the microbialite surface. Some crusts include calcified filaments, whereas others contained voids that reflect the filamentous community in shape, size, and distribution. Pavilion microbialites demonstrate that microfabric variation can reflect differences in lithification processes and microbial metabolisms as well as microbial community morphology and organization. Even when the morphology of individual filaments or cells is not well preserved, the microbial growth habit can be captured in mesoscale microbialite structures. These results suggest that when petrographic preservation is extremely good, ancient microbialite growth structures and microfabrics can be interpreted in the context of variation in community organization, community composition, and lithification history. Even in the absence of distinct microbial microfabrics, mesostructures can capture microbial community morphology. © 2015 John Wiley & Sons Ltd.

Testing a dual-fluorescence assay to monitor the viability of filamentous cyanobacteria.

PubMed

Johnson, Tylor J; Hildreth, Michael B; Gu, Liping; Zhou, Ruanbao; Gibbons, William R

2015-06-01

Filamentous cyanobacteria are currently being engineered to produce long-chain organic compounds, including 3rd generation biofuels. Because of their filamentous morphology, standard methods to quantify viability (e.g., plate counts) are not possible. This study investigated a dual-fluorescence assay based upon the LIVE/DEAD® BacLight™ Bacterial Viability Kit to quantify the percent viability of filamentous cyanobacteria using a microplate reader in a high throughput 96-well plate format. The manufacturer's protocol calls for an optical density normalization step to equalize the numbers of viable and non-viable cells used to generate calibration curves. Unfortunately, the isopropanol treatment used to generate non-viable cells released a blue pigment that altered absorbance readings of the non-viable cell solution, resulting in an inaccurate calibration curve. Thus we omitted this optical density normalization step, and carefully divided cell cultures into two equal fractions before the isopropanol treatment. While the resulting calibration curves had relatively high correlation coefficients, their use in various experiments resulted in viability estimates ranging from below 0% to far above 100%. We traced this to the apparent inaccuracy of the propidium iodide (PI) dye that was to stain only non-viable cells. Through further analysis via microplate reader, as well as confocal and wide-field epi-fluorescence microscopy, we observed non-specific binding of PI in viable filamentous cyanobacteria. While PI will not work for filamentous cyanobacteria, it is possible that other fluorochrome dyes could be used to selectively stain non-viable cells. This will be essential in future studies for screening mutants and optimizing photobioreactor system performance for filamentous cyanobacteria. Copyright © 2015 Elsevier B.V. All rights reserved.

Gel-sol transition of the cytoplasm and its regulation

NASA Astrophysics Data System (ADS)

Janmey, Paul A.

1991-05-01

The cytoplasm of motile cells contains a dynamic system of filamentous protein polymers that endow the cell with elasticity permitting it to maintain its shape in the presence of mechanical forces encountered in vivo. Part of this cytoskeleton is composed of filaments of polymerized actin. Remodeling of this network is required for cell motility and cytoplasmic restructuring, and the reversible polymerization of actin per se has been suggested to cause morphologic changes such as cell ruffling and pseudopd extension. Changes in the degree of polymerization of acting and in the association of actin filaments into supramolecular structures are often associated with cell activation. Such activation is initiated by extracellular signals that bind to receptors which are often coupled by G-proteins to the production of intracellular second messangers. Cytoplasmic gel-sol transitions therefore can occur by formation and dissolution of actin networks, mediated by a variety of actin-binding proteins which are regulated by intracellular signalling molecules such as Ca2+ and polyphosphoinositides. The effects of three actin binding proteins: profilin, gelsolin and ABP (Tilamin) on the polymerization of actin and the viscoelasticity of the resulting networks measured in vitro suggest possible roles of these proteins in vivo. In particular, gelsolin, which activated by Ca2+ to sever and cap actin filaments, and released from filament ends by PIP2, appears to be a likely candidate for regulation of gel-sol transitions in response to cell activation. Recent results demonstrate that the hydrolysis of ATP that occurs following actin polymerization also influences the structure of the resulting filament. In addition being regulated by acting-binding proteins, the viscoelasticity of actin networks is also affected by the presence of the other two classes of cytoplasmic protein polymers, microtubules and intermediate filaments.

Cluster of Genes That Encode Positive and Negative Elements Influencing Filament Length in a Heterocyst-Forming Cyanobacterium

PubMed Central

Merino-Puerto, Victoria; Herrero, Antonia

2013-01-01

The filamentous, heterocyst-forming cyanobacteria perform oxygenic photosynthesis in vegetative cells and nitrogen fixation in heterocysts, and their filaments can be hundreds of cells long. In the model heterocyst-forming cyanobacterium Anabaena sp. strain PCC 7120, the genes in the fraC-fraD-fraE operon are required for filament integrity mainly under conditions of nitrogen deprivation. The fraC operon transcript partially overlaps gene all2395, which lies in the opposite DNA strand and ends 1 bp beyond fraE. Gene all2395 produces transcripts of 1.35 kb (major transcript) and 2.2 kb (minor transcript) that overlap fraE and whose expression is dependent on the N-control transcription factor NtcA. Insertion of a gene cassette containing transcriptional terminators between fraE and all2395 prevented production of the antisense RNAs and resulted in an increased length of the cyanobacterial filaments. Deletion of all2395 resulted in a larger increase of filament length and in impaired growth, mainly under N2-fixing conditions and specifically on solid medium. We denote all2395 the fraF gene, which encodes a protein restricting filament length. A FraF-green fluorescent protein (GFP) fusion protein accumulated significantly in heterocysts. Similar to some heterocyst differentiation-related proteins such as HglK, HetL, and PatL, FraF is a pentapeptide repeat protein. We conclude that the fraC-fraD-fraE←fraF gene cluster (where the arrow indicates a change in orientation), in which cis antisense RNAs are produced, regulates morphology by encoding proteins that influence positively (FraC, FraD, FraE) or negatively (FraF) the length of the filament mainly under conditions of nitrogen deprivation. This gene cluster is often conserved in heterocyst-forming cyanobacteria. PMID:23813733

Density profiles in the Scrape-Off Layer interpreted through filament dynamics

NASA Astrophysics Data System (ADS)

Militello, Fulvio

2017-10-01

We developed a new theoretical framework to clarify the relation between radial Scrape-Off Layer density profiles and the fluctuations that generate them. The framework provides an interpretation of the experimental features of the profiles and of the turbulence statistics on the basis of simple properties of the filaments, such as their radial motion and their draining towards the divertor. L-mode and inter-ELM filaments are described as a Poisson process in which each event is independent and modelled with a wave function of amplitude and width statistically distributed according to experimental observations and evolving according to fluid equations. We will rigorously show that radially accelerating filaments, less efficient parallel exhaust and also a statistical distribution of their radial velocity can contribute to induce flatter profiles in the far SOL and therefore enhance plasma-wall interactions. A quite general result of our analysis is the resiliency of this non-exponential nature of the profiles and the increase of the relative fluctuation amplitude towards the wall, as experimentally observed. According to the framework, profile broadening at high fueling rates can be caused by interactions with neutrals (e.g. charge exchange) in the divertor or by a significant radial acceleration of the filaments. The framework assumptions were tested with 3D numerical simulations of seeded SOL filaments based on a two fluid model. In particular, filaments interact through the electrostatic field they generate only when they are in close proximity (separation comparable to their width in the drift plane), thus justifying our independence hypothesis. In addition, we will discuss how isolated filament motion responds to variations in the plasma conditions, and specifically divertor conditions. Finally, using the theoretical framework we will reproduce and interpret experimental results obtained on JET, MAST and HL-2A.

Internal epithelia in Drosophila display rudimentary competence to form cytoplasmic networks of transgenic human vimentin.

PubMed

Gullmets, Josef; Torvaldson, Elin; Lindqvist, Julia; Imanishi, Susumu Y; Taimen, Pekka; Meinander, Annika; Eriksson, John E

2017-12-01

Cytoplasmic intermediate filaments (cIFs) are found in all eumetazoans, except arthropods. To investigate the compatibility of cIFs in arthropods, we expressed human vimentin (hVim), a cIF with filament-forming capacity in vertebrate cells and tissues, transgenically in Drosophila Transgenic hVim could be recovered from whole-fly lysates by using a standard procedure for intermediate filament (IF) extraction. When this procedure was used to test for the possible presence of IF-like proteins in flies, only lamins and tropomyosin were observed in IF-enriched extracts, thereby providing biochemical reinforcement to the paradigm that arthropods lack cIFs. In Drosophila , transgenic hVim was unable to form filament networks in S2 cells and mesenchymal tissues; however, cage-like vimentin structures could be observed around the nuclei in internal epithelia, which suggests that Drosophila retains selective competence for filament formation. Taken together, our results imply that although the filament network formation competence is partially lost in Drosophila , a rudimentary filament network formation ability remains in epithelial cells. As a result of the observed selective competence for cIF assembly in Drosophila , we hypothesize that internal epithelial cIFs were the last cIFs to disappear from arthropods.-Gullmets, J., Torvaldson, E., Lindqvist, J., Imanishi, S. Y., Taimen, P., Meinander, A., Eriksson, J. E. Internal epithelia in Drosophila display rudimentary competence to form cytoplasmic networks of transgenic human vimentin. © FASEB.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whitledge, T E

The regeneration of nitrogen is an important process that increases the efficiency of the upwelling ecosystem by enlarging their spatial scales. Ammonium regeneration was considered to contribute 42 to 72 percent of phytoplankton nitrogen requirements in the northwest Africa, Peru, and Baja California upwelling systems. Zooplankton are responsible for the largest portion of regenerated nitrogen; however, fish and benthic sediments may be nearly as large. Comparisons of the importance of ammonium regeneration in upwelling areas with coastal and open ocean regions indicate that the percentage contributions are similar. Future nutrient regeneration studies are needed to assess the recycling of benthicmore » sediments, microzooplankton, gelatinous zooplankton, demersal fish, bacterioplankton, and mollusks.« less

Kinetic factors determining conducting filament formation in solid polymer electrolyte based planar devices

NASA Astrophysics Data System (ADS)

Krishnan, Karthik; Aono, Masakazu; Tsuruoka, Tohru

2016-07-01

Resistive switching characteristics and conducting filament formation dynamics in solid polymer electrolyte (SPE) based planar-type atomic switches, with opposing active Ag and inert Pt electrodes, have been investigated by optimizing the device configuration and experimental parameters such as the gap distance between the electrodes, the salt inclusion in the polymer matrix, and the compliance current applied in current-voltage measurements. The high ionic conductivities of SPE enabled us to make scanning electron microscopy observations of the filament formation processes in the sub-micrometer to micrometer ranges. It was found that switching behaviour and filament growth morphology depend strongly on several kinetic factors, such as the redox reaction rate at the electrode-polymer interfaces, ion mobility in the polymer matrix, electric field strength, and the reduction sites for precipitation. Different filament formations, resulting from unidirectional and dendritic growth behaviours, can be controlled by tuning specified parameters, which in turn improves the stability and performance of SPE-based devices.Resistive switching characteristics and conducting filament formation dynamics in solid polymer electrolyte (SPE) based planar-type atomic switches, with opposing active Ag and inert Pt electrodes, have been investigated by optimizing the device configuration and experimental parameters such as the gap distance between the electrodes, the salt inclusion in the polymer matrix, and the compliance current applied in current-voltage measurements. The high ionic conductivities of SPE enabled us to make scanning electron microscopy observations of the filament formation processes in the sub-micrometer to micrometer ranges. It was found that switching behaviour and filament growth morphology depend strongly on several kinetic factors, such as the redox reaction rate at the electrode-polymer interfaces, ion mobility in the polymer matrix, electric field strength, and the reduction sites for precipitation. Different filament formations, resulting from unidirectional and dendritic growth behaviours, can be controlled by tuning specified parameters, which in turn improves the stability and performance of SPE-based devices. Electronic supplementary information (ESI) available. See DOI: 10.1039/c6nr00569a